Citrus Sinensis ID: 004113
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.941 | 0.961 | 0.425 | 1e-146 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.893 | 0.945 | 0.396 | 1e-137 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.874 | 0.872 | 0.408 | 1e-124 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.923 | 0.953 | 0.381 | 1e-122 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.580 | 0.557 | 0.280 | 2e-27 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.445 | 0.294 | 0.278 | 5e-15 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.445 | 0.294 | 0.278 | 5e-15 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.445 | 0.294 | 0.276 | 3e-14 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.445 | 0.290 | 0.273 | 4e-14 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.445 | 0.299 | 0.273 | 4e-14 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 329/773 (42%), Positives = 453/773 (58%), Gaps = 45/773 (5%)
Query: 11 LFLFLGSFFGDAAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNS--IIR 68
FL L F +++ S G YIV+M A S S D H+ S L+ +S ++
Sbjct: 11 FFLLLCLGFCHVSSSS-SDQGTYIVHM--AKSQMPSSFDLHSNWYDSSLRSISDSAELLY 67
Query: 69 SYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPS 128
+Y++ GF+ RL+ EEA +L +PGV+S+ P+ +LHTTR+ FL + D P
Sbjct: 68 TYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHT-ADLFPE 126
Query: 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKII 188
SD ++G+LDTGVWPES+S++D+ GPIP+ WKG C AG + + CNRK+I
Sbjct: 127 -----AGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLI 181
Query: 189 GARFY--DIED-----DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGG 241
GARF+ E D +SPRD GHGTH +STAAG V+GAS G A+GTA G
Sbjct: 182 GARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGM 241
Query: 242 SPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALG 301
+P +R+AVY+VC GC S+ILAA D AIAD V+VLS+SLGG + D +A+G
Sbjct: 242 APRARVAVYKVCWLG-GCFSSDILAAIDKAIADNVNVLSMSLGGG---MSDYYRDGVAIG 297
Query: 302 AFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361
AF A+E GI V CSAGN GPSS S+ N APWI TV A T+DRDF + +LG K G S
Sbjct: 298 AFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVS 357
Query: 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVV 421
+ + P IYA +A +N C +L VKGKIV+CD + + V
Sbjct: 358 LFKGEALPDKLLPFIYAGNA----SNATNGNLCMTGTLIPEKVKGKIVMCDR--GINARV 411
Query: 422 DKKDGVKSLGGVGVIVID---DQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVAT 478
K D VK+ GGVG+I+ + + VA ++ P T + K I Y+ + NP A+
Sbjct: 412 QKGDVVKAAGGVGMILANTAANGEELVADAH-LLPATTVGEKAGDIIRHYVTTDPNPTAS 470
Query: 479 ILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMG--NDTGEAPEG 536
I +V KP+P +A FS+RGP+ +T NILKPD+ APGVNILAAW G TG A +
Sbjct: 471 ISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDS 530
Query: 537 KEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPIT-TN 595
+ FN+ISGTSMSCPH+SG+ A +K +P +SP+ I+SA+MTTA +T P+
Sbjct: 531 RRVE-FNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIA 589
Query: 596 SGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFA 655
+G +TP+D GAG VS T + PGL+Y+ TT DYL FLC Y +I+ ++ +++
Sbjct: 590 TGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSR---RNYT 646
Query: 656 CPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAP-QGLNVK 714
C S S++++NYPS AV + DG +RTVT+V G Y+V V + G+ +
Sbjct: 647 C-DPSKSYSVADLNYPSFAV-NVDGVGAYKYTRTVTSVGGAG--TYSVKVTSETTGVKIS 702
Query: 715 VIPEELQFTKSGQKLSYQVTFT-SALSPLKEDVFGSITWSNGKYKVRSLFVVS 766
V P L F ++ +K SY VTFT + P + FGSI WS+GK+ V S +S
Sbjct: 703 VEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAIS 755
|
Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust.
Identities = 294/742 (39%), Positives = 424/742 (57%), Gaps = 51/742 (6%)
Query: 32 VYIVYMGAAASGKGSLRDDHAQLLASML--KWKKNSIIRSYKHGFSGFAARLSAEEAHAL 89
+YIVYMG S H +L ++ + S++ +YK F+GFA +L+ EEA +
Sbjct: 33 IYIVYMGRKLEDPDSAHLHHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEAEKI 92
Query: 90 SKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGV 149
+ GVVS+F + + +LHTTRSWDFL +VP S ES+ ++G+LDTG+
Sbjct: 93 ASMEGVVSVFLNEMNELHTTRSWDFLGFPL-----TVPRRS----QVESNIVVGVLDTGI 143
Query: 150 WPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV-ANGQSPRD 208
WPES SF+D+ P P +WKGTC N+ F CNRKIIGAR Y I + + PRD
Sbjct: 144 WPESPSFDDEGFSPPPPKWKGTCETSNN---FRCNRKIIGARSYHIGRPISPGDVNGPRD 200
Query: 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAF 268
GHGTH ASTAAG V A+ YGL GTA GG P +RIA Y+VC + GC+ ++ILAA+
Sbjct: 201 TNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAY 259
Query: 269 DDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVN 328
DDAIADGVD++SLS+GG+ R D IA+G+FHAVE GI SAGN GP+ + +
Sbjct: 260 DDAIADGVDIISLSVGGAN--PRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTAS 317
Query: 329 FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANE 388
+PW+ +VAAST+DR F + + +G + +G SIN + Q YPL+ + ++
Sbjct: 318 LSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQ---YYPLVSGRDIPNTGFDK 374
Query: 389 NAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448
+ +R C S+ L+KGKIV+C+ + + KSL G +++ +R A S
Sbjct: 375 STSRFCTDKSVNPNLLKGKIVVCE------ASFGPHEFFKSLDGAAGVLMTSNTRDYADS 428
Query: 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRN 508
Y P +V+ + L YI S R+P ATI + ++ AP + FS+RGP+ T++
Sbjct: 429 Y-PLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILN-ASAPVVVSFSSRGPNRATKD 486
Query: 509 ILKPDITAPGVNILAAWMGNDTGEAPEG--KEPPLFNVISGTSMSCPHISGVVAAIKHQN 566
++KPDI+ PGV ILAAW AP G + LFN+ISGTSMSCPHI+G+ +K N
Sbjct: 487 VIKPDISGPGVEILAAW----PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYN 542
Query: 567 PTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTT 626
PT+SP+ IKSA+MTTA+ N P + +G+G V+ +++PGLVY+
Sbjct: 543 PTWSPAAIKSALMTTASPMNARFNP--------QAEFAYGSGHVNPLKAVRPGLVYDANE 594
Query: 627 LDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAVS-SFDGKEGRT 685
DY+ FLC GY+ ++ I D++ + ++NYPS +S S +
Sbjct: 595 SDYVKFLCGQGYNTQAVRRIT----GDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQY 650
Query: 686 ISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKED 745
+RT+T+VA T Y + APQGL + V P L F G + S+ +T ++
Sbjct: 651 FNRTLTSVAPQAST-YRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFV-- 707
Query: 746 VFGSITWSNGKYKVRSLFVVSS 767
V S+ WS+G + VRS ++S
Sbjct: 708 VSASLVWSDGVHYVRSPITITS 729
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust.
Identities = 300/734 (40%), Positives = 401/734 (54%), Gaps = 58/734 (7%)
Query: 66 IIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDS 125
++ SY GFAA+L+ EA L P VV++ PD VLQ+ TT S+ FL + D
Sbjct: 71 LLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGL------DG 124
Query: 126 VPSPSLNSQDQESD-TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCN 184
+ + S+ + TIIG+LDTGVWPES SF+D M IP +WKG C G S SCN
Sbjct: 125 FGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCN 184
Query: 185 RKIIGARFYDIEDDVVANG--QSP---------RDMVGHGTHVASTAAGQAVQGASYYGL 233
RK+IGARF+ I VAN +SP RD GHGTH AST G +V A+ G
Sbjct: 185 RKLIGARFF-IRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGN 243
Query: 234 AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPL 293
AG A G +PG+ IAVY+VC GC S+ILAA D AI D VDVLSLSLGG PL
Sbjct: 244 GAGVARGMAPGAHIAVYKVCWFN-GCYSSDILAAIDVAIQDKVDVLSLSLGG---FPIPL 299
Query: 294 TDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGG 353
DD IA+G F A+E GI+V+C+AGN+GP SV N APW+ T+ A T+DR F + + L
Sbjct: 300 YDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLAN 359
Query: 354 NKVIKGESINFSNLQKSPVYPLIYAKSAKKD------DANENAARNCDLDSLAGALVKGK 407
K++ GES+ YP K+A ++ + + C SL ++GK
Sbjct: 360 GKLLYGESL----------YPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGK 409
Query: 408 IVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGT--FPLTVISSKEAAEI 465
+V+CD + S +K + VK GGV +I+ + + S P T+I E+ +
Sbjct: 410 MVICDRGVNGRS--EKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLL 467
Query: 466 LAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAW 525
AY+N+ P A I+ +V AP +A FSARGPS +ILKPD+ APGVNI+AAW
Sbjct: 468 KAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAW 527
Query: 526 MGN--DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583
N TG P F V+SGTSMSCPH+SG+ A I+ P +SP+ IKSA+MTTA
Sbjct: 528 PQNLGPTG-LPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTAD 586
Query: 584 QTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKI 643
+ I + A + GAG V+ ++ PGLVY +DY+ +LC G+ S I
Sbjct: 587 LYDRQGKAIKDGNKPAGV-FAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDI 645
Query: 644 KMIATTIPKDFACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTV 703
I K+ +C + ++NYPSIAV GK I+R VTNV G+ +IY+V
Sbjct: 646 LAITH---KNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNV-GSPNSIYSV 701
Query: 704 AVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVF----GSITWSNGK--- 756
V AP+G+ V V P+ L F Q LSY+V F V G +TW N
Sbjct: 702 NVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLM 761
Query: 757 YKVRSLFVVSSKSS 770
+VRS V+ K++
Sbjct: 762 QRVRSPISVTLKTN 775
|
Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 289/757 (38%), Positives = 420/757 (55%), Gaps = 43/757 (5%)
Query: 22 AAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASM---LKWKKNSIIRSYKHGFSGFA 78
A+A YI+Y+G H LL+S+ + K + SY F+ FA
Sbjct: 27 ASAEDEHAKDFYIIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFA 86
Query: 79 ARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQES 138
A+LS EA + + VVS+ + +LHTT+SWDF+ +P + E
Sbjct: 87 AKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFV---------GLPLTAKRHLKAER 137
Query: 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDD 198
D IIG+LDTG+ P+SESF D +GP P +WKG+C + CN KIIGA+++ + +
Sbjct: 138 DVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTG--CNNKIIGAKYFKHDGN 195
Query: 199 VVANG-QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
V A +SP D+ GHGTH +ST AG V AS YG+A GTA G P +R+A+Y+VC
Sbjct: 196 VPAGEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARS 255
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
GC +ILA F+ AI DGV+++S+S+GG + D I++G+FHA+ GI V SAG
Sbjct: 256 GCADMDILAGFEAAIHDGVEIISISIGGPIA---DYSSDSISVGSFHAMRKGILTVASAG 312
Query: 318 NDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESIN-FSNLQKSPVYPLI 376
NDGPSSG+V N PWI TVAAS IDR F+S I LG K G I+ FS KS YPL+
Sbjct: 313 NDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKS--YPLV 370
Query: 377 YAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436
A K+ ++ AR C DSL VKGK+++C G V + +KS GG G I
Sbjct: 371 SGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGG--GGV---ESTIKSYGGAGAI 425
Query: 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAY 496
++ DQ A + P T ++S I YINS R+ A I T VT PAP +A
Sbjct: 426 IVSDQYLDNAQIF-MAPATSVNSSVGDIIYRYINSTRSASAVIQKTRQVT--IPAPFVAS 482
Query: 497 FSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEG-KEPPLFNVISGTSMSCPHI 555
FS+RGP+P + +LKPDI APG++ILAA+ + +G + F ++SGTSM+CPH+
Sbjct: 483 FSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHV 542
Query: 556 SGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTAS 615
+GV A +K +P ++P+ IKSA++T+A PI+ A + +G G+++ +
Sbjct: 543 AGVAAYVKSFHPDWTPAAIKSAIITSAK-------PISRRVNKDAE-FAYGGGQINPRRA 594
Query: 616 LQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAV 675
PGLVY+ + Y+ FLC GY+ + + + T + +C ++NYP+I +
Sbjct: 595 ASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGT--RSVSCSSIVPGLGHDSLNYPTIQL 652
Query: 676 SSFDGKEGR--TISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQV 733
+ K R VTNV G ++YT V AP+G+ + V P+ L F+K+ QK S++V
Sbjct: 653 TLRSAKTSTLAVFRRRVTNV-GPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKV 711
Query: 734 TFTSALSPLKEDVFGSITWSNGKYKVRSLFVVSSKSS 770
+ + V G + W + ++ VRS V+ S +S
Sbjct: 712 VVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIYSPTS 748
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 152/542 (28%), Positives = 230/542 (42%), Gaps = 93/542 (17%)
Query: 62 KKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDV 121
K + R Y+ FSGF+ +L A E L V +++P+ + + D + I D
Sbjct: 98 KNGKVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKD-VTISEDA 156
Query: 122 ----LIDSVPSPSLNSQDQESDT----IIGILDTGVWPESESFNDKDMGPIPTRWKGTCN 173
+ DS P N T + I+DTGV +N D+ ++KG
Sbjct: 157 VSPQMDDSAPYIGANDAWDLGYTGKGIKVAIIDTGV-----EYNHPDLKKNFGQYKGYDF 211
Query: 174 AGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR-DMVGHGTHVASTAAGQAVQGASYYG 232
ND YD ++ + PR + HGTHVA T A
Sbjct: 212 VDND---------------YDPKETPTGD---PRGEATDHGTHVAGTVA----------- 242
Query: 233 LAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRP 292
A GT G +P + + YRV P T N++A + A+ DG DV++LSLG S + P
Sbjct: 243 -ANGTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNS--LNNP 299
Query: 293 LTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLG 352
AL A+ G+ V S GN GP+ +TV + R+ I +G
Sbjct: 300 DWATSTALD--WAMSEGVVAVTSNGNSGPNG----------WTVGSPGTSREA---ISVG 344
Query: 353 GNKVIKGE-SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDL--------DSLAGAL 403
++ E ++ F + + V K+DD + +L G
Sbjct: 345 ATQLPLNEYAVTFGSYSSAKVMGY-----NKEDDVKALNNKEVELVEAGIGEAKDFEGKD 399
Query: 404 VKGKIVLCDNDDDMGSV--VDKKDGVKSLGGVGVIVIDDQSRAVASSY-GTFPLTVISSK 460
+ GK+ + GS+ VDK D K G +G++V ++ S + ++ G T+ S
Sbjct: 400 LTGKVAVVKR----GSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSL 455
Query: 461 EAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN 520
E E L T TVS +A FS+RGP + ++KPDI+APGVN
Sbjct: 456 EDGEKLVSALKAGETKTTFKLTVSKAL---GEQVADFSSRGPV-MDTWMIKPDISAPGVN 511
Query: 521 ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMT 580
I++ +D P+ P + GTSM+ PHI+G VA IK P +S +IK+A+M
Sbjct: 512 IVSTIPTHD----PD--HPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMN 565
Query: 581 TA 582
TA
Sbjct: 566 TA 567
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 122/438 (27%), Positives = 186/438 (42%), Gaps = 94/438 (21%)
Query: 212 HGTHVASTAAGQA-VQGASYYGLAAGTAIGGSPGSRIAVYRV-CSPEYGCTGSNILAAFD 269
HGTHV+ +G A + Y L G P +++ + RV N A
Sbjct: 195 HGTHVSGILSGNAPSETKEPYRLE-----GAMPEAQLLLMRVEIVNGLADYARNYAQAIR 249
Query: 270 DAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF-HAVEHGITVVCSAGNDG-------- 320
DA+ G V+++S G +A L D+ AF +A G+++V SAGND
Sbjct: 250 DAVNLGAKVINMSFGNAALAYANLPDE--TKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 307
Query: 321 -----PSSGSVVN--FAPWIFTVAASTIDRDF-ESDIVLGGNKVIKGESINFSN-LQKSP 371
P G V A TVA+ + D+ E+ V ++ K + +N + +
Sbjct: 308 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 367
Query: 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV---K 428
Y YA K+D ++ VKGKI L + D +D KD + K
Sbjct: 368 AYDYAYANRGTKEDDFKD--------------VKGKIALIERGD-----IDFKDKIANAK 408
Query: 429 SLGGVGVIVIDDQSRAVA---SSYGTFPLTVISSKEAAEILAYINSKR----NPVATILP 481
G VGV++ D+Q + + P IS K+ +L NSK+ N +LP
Sbjct: 409 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG--LLLKDNSKKTITFNATPKVLP 466
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRN-ILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 540
T S TK ++ FS+ G LT + +KPDI APG +IL++ N
Sbjct: 467 TASGTK------LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----------- 506
Query: 541 LFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSE----IKSAVMTTATQTNNLRAPI 592
+ +SGTSMS P ++G++ ++ Q P +PSE K +M++AT A
Sbjct: 507 -YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT------ALY 559
Query: 593 TTNSGAAATPYDFGAGEV 610
+ A +P GAG V
Sbjct: 560 DEDEKAYFSPRQQGAGAV 577
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 122/438 (27%), Positives = 186/438 (42%), Gaps = 94/438 (21%)
Query: 212 HGTHVASTAAGQA-VQGASYYGLAAGTAIGGSPGSRIAVYRV-CSPEYGCTGSNILAAFD 269
HGTHV+ +G A + Y L G P +++ + RV N A
Sbjct: 195 HGTHVSGILSGNAPSETKEPYRLE-----GAMPEAQLLLMRVEIVNGLADYARNYAQAIR 249
Query: 270 DAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF-HAVEHGITVVCSAGNDG-------- 320
DA+ G V+++S G +A L D+ AF +A G+++V SAGND
Sbjct: 250 DAVNLGAKVINMSFGNAALAYANLPDE--TKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 307
Query: 321 -----PSSGSVVN--FAPWIFTVAASTIDRDF-ESDIVLGGNKVIKGESINFSN-LQKSP 371
P G V A TVA+ + D+ E+ V ++ K + +N + +
Sbjct: 308 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 367
Query: 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV---K 428
Y YA K+D ++ VKGKI L + D +D KD + K
Sbjct: 368 AYDYAYANRGTKEDDFKD--------------VKGKIALIERGD-----IDFKDKIANAK 408
Query: 429 SLGGVGVIVIDDQSRAVA---SSYGTFPLTVISSKEAAEILAYINSKR----NPVATILP 481
G VGV++ D+Q + + P IS K+ +L NSK+ N +LP
Sbjct: 409 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG--LLLKDNSKKTITFNATPKVLP 466
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRN-ILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 540
T S TK ++ FS+ G LT + +KPDI APG +IL++ N
Sbjct: 467 TASGTK------LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----------- 506
Query: 541 LFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSE----IKSAVMTTATQTNNLRAPI 592
+ +SGTSMS P ++G++ ++ Q P +PSE K +M++AT A
Sbjct: 507 -YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT------ALY 559
Query: 593 TTNSGAAATPYDFGAGEV 610
+ A +P GAG V
Sbjct: 560 DEDEKAYFSPRQQGAGAV 577
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 186/438 (42%), Gaps = 94/438 (21%)
Query: 212 HGTHVASTAAGQA-VQGASYYGLAAGTAIGGSPGSRIAVYRV-CSPEYGCTGSNILAAFD 269
HGTHV+ +G A + Y L G P +++ + RV N A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRLE-----GAMPEAQLLLMRVEIVNGLADYARNYAQAIR 247
Query: 270 DAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF-HAVEHGITVVCSAGNDG-------- 320
DA+ G V+++S G +A L D+ AF +A G+++V SAGND
Sbjct: 248 DAVNLGAKVINMSFGNAALAYANLPDE--TKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 321 -----PSSGSVVN--FAPWIFTVAASTIDRDF-ESDIVLGGNKVIKGESINFSN-LQKSP 371
P G V A TVA+ + D+ E+ +V ++ K + +N + +
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQDKEMPVLSTNRFEPNK 365
Query: 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV---K 428
Y YA K+D ++ VKGKI L + D +D KD V K
Sbjct: 366 AYDYAYANRGMKEDDFKD--------------VKGKIALIERGD-----IDFKDKVANAK 406
Query: 429 SLGGVGVIVIDDQSRAVA---SSYGTFPLTVISSKEAAEILAYINSKR----NPVATILP 481
G VGV++ D+Q + + P IS K+ +L N ++ N +LP
Sbjct: 407 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG--LLLKDNPQKTITFNATPKVLP 464
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRN-ILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 540
T S TK ++ FS+ G LT + +KPDI APG +IL++ N
Sbjct: 465 TASGTK------LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----------- 504
Query: 541 LFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSE----IKSAVMTTATQTNNLRAPI 592
+ +SGTSMS P ++G++ ++ Q P +PSE K +M++AT A
Sbjct: 505 -YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT------ALY 557
Query: 593 TTNSGAAATPYDFGAGEV 610
+ A +P GAG V
Sbjct: 558 DEDEKAYFSPRQQGAGAV 575
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 185/438 (42%), Gaps = 94/438 (21%)
Query: 212 HGTHVASTAAGQA-VQGASYYGLAAGTAIGGSPGSRIAVYRV-CSPEYGCTGSNILAAFD 269
HGTHV+ +G A + Y L G P +++ + RV N A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRLE-----GAMPEAQLLLMRVEIVNGLADYARNYAQAIR 247
Query: 270 DAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF-HAVEHGITVVCSAGNDG-------- 320
DA+ G V+++S G +A L D+ AF +A G+++V SAGND
Sbjct: 248 DAVNLGAKVINMSFGNAALAYANLPDE--TKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 321 -----PSSGSVVN--FAPWIFTVAASTIDRDF-ESDIVLGGNKVIKGESINFSN-LQKSP 371
P G V A TVA+ + D+ E+ V ++ K + +N + +
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 365
Query: 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV---K 428
Y YA K+D ++ VKGKI L + D +D KD + K
Sbjct: 366 AYDYAYANRGMKEDDFKD--------------VKGKIALIERGD-----IDFKDKIANAK 406
Query: 429 SLGGVGVIVIDDQSRAVA---SSYGTFPLTVISSKEAAEILAYINSKR----NPVATILP 481
G VGV++ D+Q + + P IS K+ +L N ++ N +LP
Sbjct: 407 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG--LLLKENPQKTITFNATPKVLP 464
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRN-ILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 540
T S TK ++ FS+ G LT + +KPDI APG +IL++ N
Sbjct: 465 TASGTK------LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----------- 504
Query: 541 LFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSE----IKSAVMTTATQTNNLRAPI 592
+ +SGTSMS P ++G++ ++ Q P +PSE K +M++AT A
Sbjct: 505 -YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT------ALY 557
Query: 593 TTNSGAAATPYDFGAGEV 610
+ A +P GAG V
Sbjct: 558 DEDEKAYFSPRQQGAGAV 575
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 185/438 (42%), Gaps = 94/438 (21%)
Query: 212 HGTHVASTAAGQA-VQGASYYGLAAGTAIGGSPGSRIAVYRV-CSPEYGCTGSNILAAFD 269
HGTHV+ +G A + Y L G P +++ + RV N A
Sbjct: 193 HGTHVSGILSGNAPSETKEPYRLE-----GAMPEAQLLLMRVEIVNGLADYARNYAQAIR 247
Query: 270 DAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF-HAVEHGITVVCSAGNDG-------- 320
DA+ G V+++S G +A L D+ AF +A G+++V SAGND
Sbjct: 248 DAVNLGAKVINMSFGNAALAYANLPDE--TKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 321 -----PSSGSVVN--FAPWIFTVAASTIDRDF-ESDIVLGGNKVIKGESINFSN-LQKSP 371
P G V A TVA+ + D+ E+ V ++ K + +N + +
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNK 365
Query: 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV---K 428
Y YA K+D ++ VKGKI L + D +D KD + K
Sbjct: 366 AYDYAYANRGMKEDDFKD--------------VKGKIALIERGD-----IDFKDKIANAK 406
Query: 429 SLGGVGVIVIDDQSRAVA---SSYGTFPLTVISSKEAAEILAYINSKR----NPVATILP 481
G VGV++ D+Q + + P IS K+ +L N ++ N +LP
Sbjct: 407 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG--LLLKENPQKTITFNATPKVLP 464
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRN-ILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 540
T S TK ++ FS+ G LT + +KPDI APG +IL++ N
Sbjct: 465 TASGTK------LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----------- 504
Query: 541 LFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSE----IKSAVMTTATQTNNLRAPI 592
+ +SGTSMS P ++G++ ++ Q P +PSE K +M++AT A
Sbjct: 505 -YAKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSAT------ALY 557
Query: 593 TTNSGAAATPYDFGAGEV 610
+ A +P GAG V
Sbjct: 558 DEDEKAYFSPRQQGAGAV 575
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | ||||||
| 302142715 | 743 | unnamed protein product [Vitis vinifera] | 0.950 | 0.989 | 0.668 | 0.0 | |
| 225457879 | 768 | PREDICTED: subtilisin-like protease-like | 0.950 | 0.957 | 0.668 | 0.0 | |
| 18394832 | 769 | Subtilisin-like serine endopeptidase-lik | 0.989 | 0.994 | 0.623 | 0.0 | |
| 21593457 | 769 | subtilisin-like serine protease [Arabido | 0.989 | 0.994 | 0.623 | 0.0 | |
| 317106589 | 756 | JHL20J20.3 [Jatropha curcas] | 0.950 | 0.972 | 0.648 | 0.0 | |
| 449437188 | 772 | PREDICTED: subtilisin-like protease-like | 0.978 | 0.979 | 0.637 | 0.0 | |
| 449515528 | 777 | PREDICTED: cucumisin-like [Cucumis sativ | 0.958 | 0.953 | 0.645 | 0.0 | |
| 79318240 | 730 | Subtilisin-like serine endopeptidase-lik | 0.923 | 0.978 | 0.641 | 0.0 | |
| 224085924 | 769 | predicted protein [Populus trichocarpa] | 0.987 | 0.992 | 0.602 | 0.0 | |
| 224061977 | 730 | predicted protein [Populus trichocarpa] | 0.936 | 0.991 | 0.636 | 0.0 |
| >gi|302142715|emb|CBI19918.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/738 (66%), Positives = 603/738 (81%), Gaps = 3/738 (0%)
Query: 32 VYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSK 91
+YIVYMGAA S +GS R DHAQ+L+S+LK K N+++ SY+HGFSGFAA L+ EEA ++++
Sbjct: 6 IYIVYMGAATSSEGSYRYDHAQILSSLLKRKANALVHSYRHGFSGFAAHLTEEEARSIAQ 65
Query: 92 KPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQ-ESDTIIGILDTGVW 150
KPGVVS+F DPVLQLHTTRSWDFL QTD+ DS P +SQ ++DTIIGILDTG+W
Sbjct: 66 KPGVVSVFEDPVLQLHTTRSWDFLHYQTDLETDSKPGSDGDSQSSGQADTIIGILDTGIW 125
Query: 151 PESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMV 210
PESESF+DK MGP+P+RW+GTC ND SF CNRK+IGAR+Y+ D A + RDM+
Sbjct: 126 PESESFSDKTMGPVPSRWRGTCMESNDVDSFKCNRKLIGARYYNDSDAASAVPHTARDMI 185
Query: 211 GHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDD 270
GHGTHVASTAAG ++ SYYGLA+GTA GGSPGSRIA+YRVC+ +GC GS+ILAAFDD
Sbjct: 186 GHGTHVASTAAGNSLPDVSYYGLASGTAKGGSPGSRIAMYRVCT-FFGCRGSSILAAFDD 244
Query: 271 AIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFA 330
AI+DGVDVLSLSLG SA + DPIA+GA+HAV GITVVCSAGNDGPS +VVN A
Sbjct: 245 AISDGVDVLSLSLGSSAVFELEFSTDPIAIGAYHAVAKGITVVCSAGNDGPSPQTVVNIA 304
Query: 331 PWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENA 390
PWI TV A+TIDRDFESD+VLGGNKVIKGE INF+N++KSP YPLIY SAK + + +
Sbjct: 305 PWILTVGATTIDRDFESDVVLGGNKVIKGEGINFANIKKSPAYPLIYGSSAKSNSSKVDD 364
Query: 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYG 450
ARNC +SL +KG+IVLCDNDD + +K + VK LGGVG+I+I+D++RAVAS YG
Sbjct: 365 ARNCKPNSLGEDKIKGRIVLCDNDDGEYTQTEKLEEVKRLGGVGLILIEDETRAVASRYG 424
Query: 451 TFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNIL 510
FPLTVI+SK+A+EIL+YINS RNPVATIL TVSV +YKPAPA+AYFS+RGPS T+N+L
Sbjct: 425 AFPLTVITSKDASEILSYINSTRNPVATILATVSVEQYKPAPAVAYFSSRGPSYATKNLL 484
Query: 511 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS 570
KPDI APGVNILAAW+GNDT EAP GKEPPLFN++SGTSM+CPH+SG+ A +K QNP++S
Sbjct: 485 KPDIAAPGVNILAAWIGNDTAEAPAGKEPPLFNLLSGTSMACPHVSGIAATVKSQNPSWS 544
Query: 571 PSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYL 630
PS I+SA+MTTATQ NNL+APITT+SG+ ATPYD+GAGEVS + LQPGLVYET T DYL
Sbjct: 545 PSAIRSAIMTTATQKNNLKAPITTHSGSVATPYDYGAGEVSPSGPLQPGLVYETDTADYL 604
Query: 631 NFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTV 690
FLC +GYD+SKIK+I+ T+P F CPK++ D ISN+NYPSIA+S F+G E + +SRTV
Sbjct: 605 QFLCNHGYDISKIKLISPTLPDGFTCPKNANADLISNMNYPSIAISKFNGNESKKVSRTV 664
Query: 691 TNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTS-ALSPLKEDVFGS 749
TNV ++ET YTV+V A G++VKVIP+ L+FTK+ +KLSYQV F+S S +K VFGS
Sbjct: 665 TNVGSDDETQYTVSVSAAAGVDVKVIPDTLKFTKNSKKLSYQVIFSSNGSSSVKGAVFGS 724
Query: 750 ITWSNGKYKVRSLFVVSS 767
ITW+NGK+KVRS FVVSS
Sbjct: 725 ITWTNGKHKVRSPFVVSS 742
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457879|ref|XP_002269753.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/738 (66%), Positives = 603/738 (81%), Gaps = 3/738 (0%)
Query: 32 VYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSK 91
+YIVYMGAA S +GS R DHAQ+L+S+LK K N+++ SY+HGFSGFAA L+ EEA ++++
Sbjct: 31 IYIVYMGAATSSEGSYRYDHAQILSSLLKRKANALVHSYRHGFSGFAAHLTEEEARSIAQ 90
Query: 92 KPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQ-ESDTIIGILDTGVW 150
KPGVVS+F DPVLQLHTTRSWDFL QTD+ DS P +SQ ++DTIIGILDTG+W
Sbjct: 91 KPGVVSVFEDPVLQLHTTRSWDFLHYQTDLETDSKPGSDGDSQSSGQADTIIGILDTGIW 150
Query: 151 PESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMV 210
PESESF+DK MGP+P+RW+GTC ND SF CNRK+IGAR+Y+ D A + RDM+
Sbjct: 151 PESESFSDKTMGPVPSRWRGTCMESNDVDSFKCNRKLIGARYYNDSDAASAVPHTARDMI 210
Query: 211 GHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDD 270
GHGTHVASTAAG ++ SYYGLA+GTA GGSPGSRIA+YRVC+ +GC GS+ILAAFDD
Sbjct: 211 GHGTHVASTAAGNSLPDVSYYGLASGTAKGGSPGSRIAMYRVCT-FFGCRGSSILAAFDD 269
Query: 271 AIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFA 330
AI+DGVDVLSLSLG SA + DPIA+GA+HAV GITVVCSAGNDGPS +VVN A
Sbjct: 270 AISDGVDVLSLSLGSSAVFELEFSTDPIAIGAYHAVAKGITVVCSAGNDGPSPQTVVNIA 329
Query: 331 PWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENA 390
PWI TV A+TIDRDFESD+VLGGNKVIKGE INF+N++KSP YPLIY SAK + + +
Sbjct: 330 PWILTVGATTIDRDFESDVVLGGNKVIKGEGINFANIKKSPAYPLIYGSSAKSNSSKVDD 389
Query: 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYG 450
ARNC +SL +KG+IVLCDNDD + +K + VK LGGVG+I+I+D++RAVAS YG
Sbjct: 390 ARNCKPNSLGEDKIKGRIVLCDNDDGEYTQTEKLEEVKRLGGVGLILIEDETRAVASRYG 449
Query: 451 TFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNIL 510
FPLTVI+SK+A+EIL+YINS RNPVATIL TVSV +YKPAPA+AYFS+RGPS T+N+L
Sbjct: 450 AFPLTVITSKDASEILSYINSTRNPVATILATVSVEQYKPAPAVAYFSSRGPSYATKNLL 509
Query: 511 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS 570
KPDI APGVNILAAW+GNDT EAP GKEPPLFN++SGTSM+CPH+SG+ A +K QNP++S
Sbjct: 510 KPDIAAPGVNILAAWIGNDTAEAPAGKEPPLFNLLSGTSMACPHVSGIAATVKSQNPSWS 569
Query: 571 PSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYL 630
PS I+SA+MTTATQ NNL+APITT+SG+ ATPYD+GAGEVS + LQPGLVYET T DYL
Sbjct: 570 PSAIRSAIMTTATQKNNLKAPITTHSGSVATPYDYGAGEVSPSGPLQPGLVYETDTADYL 629
Query: 631 NFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTV 690
FLC +GYD+SKIK+I+ T+P F CPK++ D ISN+NYPSIA+S F+G E + +SRTV
Sbjct: 630 QFLCNHGYDISKIKLISPTLPDGFTCPKNANADLISNMNYPSIAISKFNGNESKKVSRTV 689
Query: 691 TNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTS-ALSPLKEDVFGS 749
TNV ++ET YTV+V A G++VKVIP+ L+FTK+ +KLSYQV F+S S +K VFGS
Sbjct: 690 TNVGSDDETQYTVSVSAAAGVDVKVIPDTLKFTKNSKKLSYQVIFSSNGSSSVKGAVFGS 749
Query: 750 ITWSNGKYKVRSLFVVSS 767
ITW+NGK+KVRS FVVSS
Sbjct: 750 ITWTNGKHKVRSPFVVSS 767
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394832|ref|NP_564107.1| Subtilisin-like serine endopeptidase-like protein [Arabidopsis thaliana] gi|8778982|gb|AAF79897.1|AC022472_6 Contains similarity to p69c gene from Lycopersicon esculentum gb|Y17277 and is a member of subtilase family PF|00082. ESTs gb|T22485, gb|R65370, gb|AA651071 come from this gene [Arabidopsis thaliana] gi|110737651|dbj|BAF00765.1| hypothetical protein [Arabidopsis thaliana] gi|332191824|gb|AEE29945.1| Subtilisin-like serine endopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/775 (62%), Positives = 593/775 (76%), Gaps = 10/775 (1%)
Query: 1 MKGLVVLFPVL-FLFLGSFFGDAAAAQGSKNG--VYIVYMGAAASGKGSLRDDHAQLLAS 57
MKG+ P L FL+L GS+NG VYIVYMG+A+S + R L+ +
Sbjct: 1 MKGITFFTPFLSFLYLLCILFMTETEAGSRNGDGVYIVYMGSASSAANANRAQ--ILINT 58
Query: 58 MLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKI 117
M K + N ++ +YKHGFSGFAARL+AEEA ++KKPGVVS+FPDP QLHTT SWDFLK
Sbjct: 59 MFKRRANDLLHTYKHGFSGFAARLTAEEAKVIAKKPGVVSVFPDPHFQLHTTHSWDFLKY 118
Query: 118 QTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGND 177
QT V +DS P S + D D+I+GILDTG+WPESESFNDKDMGPIP+RWKGTC D
Sbjct: 119 QTSVKVDSGPPSS--ASDGSYDSIVGILDTGIWPESESFNDKDMGPIPSRWKGTCMEAKD 176
Query: 178 NVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGT 237
S +CNRKIIGAR+Y DD + + RD++GHG+HV+ST AG AV+ ASYYG+A+GT
Sbjct: 177 FKSSNCNRKIIGARYYKNPDDD-SEYYTTRDVIGHGSHVSSTIAGSAVENASYYGVASGT 235
Query: 238 AIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDP 297
A GGS +RIA+Y+VC+P GCTGS+ILAAFDDAIADGVDVLSLSLG A L DP
Sbjct: 236 AKGGSQNARIAMYKVCNPG-GCTGSSILAAFDDAIADGVDVLSLSLGAPAYARIDLNTDP 294
Query: 298 IALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVI 357
IA+GAFHAVE GI V+CSAGNDGP G+V N APWI TVAA+TIDRDFESD+VLGGNKVI
Sbjct: 295 IAIGAFHAVEQGILVICSAGNDGPDGGTVTNTAPWIMTVAANTIDRDFESDVVLGGNKVI 354
Query: 358 KGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM 417
KGE I+FSN+ KSPVYPLI+ KSAK DA+E +AR CD DSL VKGKIVLC+N
Sbjct: 355 KGEGIHFSNVSKSPVYPLIHGKSAKSADASEGSARACDSDSLDQEKVKGKIVLCENVGGS 414
Query: 418 GSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVA 477
+D VKS GG G + +DD++RAVAS+YG+FP TVI SKEAAEI +Y+NS ++PVA
Sbjct: 415 YYASSARDEVKSKGGTGCVFVDDRTRAVASAYGSFPTTVIDSKEAAEIFSYLNSTKDPVA 474
Query: 478 TILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGK 537
TILPT +V K+ PAPA+AYFS+RGPS LTR+ILKPDITAPGV+ILAAW GND+ + EGK
Sbjct: 475 TILPTATVEKFTPAPAVAYFSSRGPSSLTRSILKPDITAPGVSILAAWTGNDSSISLEGK 534
Query: 538 EPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSG 597
+NVISGTSM+ PH+S V + IK Q+PT+ PS I+SA+MTTATQTNN + ITT +G
Sbjct: 535 PASQYNVISGTSMAAPHVSAVASLIKSQHPTWGPSAIRSAIMTTATQTNNDKGLITTETG 594
Query: 598 AAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACP 657
A ATPYD GAGE+S+TAS+QPGLVYETT DYLNFLCYYGY+++ IK ++ P++F CP
Sbjct: 595 ATATPYDSGAGELSSTASMQPGLVYETTETDYLNFLCYYGYNVTTIKAMSKAFPENFTCP 654
Query: 658 KDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIP 717
DS +D IS INYPSI +S F G +T++RTVTNV + E +YTV+V+ P G N++V P
Sbjct: 655 ADSNLDLISTINYPSIGISGFKGNGSKTVTRTVTNVGEDGEAVYTVSVETPPGFNIQVTP 714
Query: 718 EELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKVRSLFVVSSKSSKS 772
E+LQFTK G+KL+YQV SA + LK+DVFG++TWSN KYKVRS V+SS+SS++
Sbjct: 715 EKLQFTKDGEKLTYQV-IVSATASLKQDVFGALTWSNAKYKVRSPIVISSESSRT 768
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21593457|gb|AAM65424.1| subtilisin-like serine protease [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/775 (62%), Positives = 593/775 (76%), Gaps = 10/775 (1%)
Query: 1 MKGLVVLFPVL-FLFLGSFFGDAAAAQGSKNG--VYIVYMGAAASGKGSLRDDHAQLLAS 57
MKG+ P L FL+L GS+NG VYIVYMG+A+S + R L+ +
Sbjct: 1 MKGITFFTPFLSFLYLLCILFMTETEAGSRNGDVVYIVYMGSASSAANANRAQ--ILINT 58
Query: 58 MLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKI 117
M K + N ++ +YKHGFSGFAARL+AEEA ++KKPGVVS+FPDP QLHTT SWDFLK
Sbjct: 59 MFKRRANDLLHTYKHGFSGFAARLTAEEAKVIAKKPGVVSVFPDPHFQLHTTHSWDFLKY 118
Query: 118 QTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGND 177
QT V +DS P S + D D+I+GILDTG+WPESESFNDKDMGPIP+RWKGTC D
Sbjct: 119 QTSVKVDSGPPSS--ASDGXYDSIVGILDTGIWPESESFNDKDMGPIPSRWKGTCMEAKD 176
Query: 178 NVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGT 237
S +CNRKIIGAR+Y DD + + RD++GHG+HV+ST AG AV+ ASYYG+A+GT
Sbjct: 177 FKSSNCNRKIIGARYYKNPDDD-SEYYTTRDVIGHGSHVSSTIAGSAVENASYYGVASGT 235
Query: 238 AIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDP 297
A GGS +RIA+Y+VC+P GCTGS+ILAAFDDAIADGVDVLSLSLG A L DP
Sbjct: 236 AKGGSQNARIAMYKVCNPG-GCTGSSILAAFDDAIADGVDVLSLSLGAPAYARIDLNTDP 294
Query: 298 IALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVI 357
IA+GAFHAVE GI V+CSAGNDGP G+V N APWI TVAA+TIDRDFESD+VLGGNKVI
Sbjct: 295 IAIGAFHAVEQGILVICSAGNDGPDGGTVTNTAPWIMTVAANTIDRDFESDVVLGGNKVI 354
Query: 358 KGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM 417
KGE I+FSN+ KSPVYPLI+ KSAK DA+E +AR CD DSL VKGKIVLC+N
Sbjct: 355 KGEGIHFSNVSKSPVYPLIHGKSAKSADASEGSARACDSDSLDQEKVKGKIVLCENVGGS 414
Query: 418 GSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVA 477
+D VKS GG G + +DD++RAVAS+YG+FP TVI SKEAAEI +Y+NS ++PVA
Sbjct: 415 YYASSARDKVKSKGGTGCVFVDDRTRAVASAYGSFPTTVIDSKEAAEIFSYLNSTKDPVA 474
Query: 478 TILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGK 537
TILPT +V K+ PAPA+AYFS+RGPS LTR+ILKPDITAPGV+ILAAW GND+ + EGK
Sbjct: 475 TILPTATVEKFTPAPAVAYFSSRGPSSLTRSILKPDITAPGVSILAAWTGNDSSISLEGK 534
Query: 538 EPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSG 597
+NVISGTSM+ PH+S V + IK Q+PT+ PS I+SA+MTTATQTNN + ITT +G
Sbjct: 535 PASQYNVISGTSMAAPHVSAVASLIKSQHPTWGPSAIRSAIMTTATQTNNDKGLITTETG 594
Query: 598 AAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACP 657
A ATPYD GAGE+S+TAS+QPGLVYETT DYLNFLCYYGY+++ IK ++ P++F CP
Sbjct: 595 ATATPYDSGAGELSSTASMQPGLVYETTETDYLNFLCYYGYNVTTIKAMSKAFPENFTCP 654
Query: 658 KDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIP 717
DS +D IS INYPSI +S F G +T++RTVTNV + E +YTV+V+ P G N++V P
Sbjct: 655 ADSNLDLISTINYPSIGISGFKGNGSKTVTRTVTNVGEDGEAVYTVSVETPPGFNIQVTP 714
Query: 718 EELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKVRSLFVVSSKSSKS 772
E+LQFTK G+KL+YQV SA + LK+DVFG++TWSN KYKVRS V+SS+SS++
Sbjct: 715 EKLQFTKDGEKLTYQV-IVSATASLKQDVFGALTWSNAKYKVRSPIVISSESSRT 768
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317106589|dbj|BAJ53097.1| JHL20J20.3 [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/748 (64%), Positives = 586/748 (78%), Gaps = 13/748 (1%)
Query: 21 DAAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAAR 80
+ A +GVYIVYMGAA G + +D+ QLL+S+L KKNS++RSY++GFSGFAAR
Sbjct: 18 ETTAIANQNDGVYIVYMGAA---NGYVENDYVQLLSSILTRKKNSLVRSYRNGFSGFAAR 74
Query: 81 LSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDT 140
LS E +++K+PGVVS+FPDPVLQLHTTRSWDFLK QTD+ IDS +S SDT
Sbjct: 75 LSEAEVQSIAKRPGVVSVFPDPVLQLHTTRSWDFLKYQTDIEIDS------SSMSHGSDT 128
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDI-EDDV 199
I+GI+DTG+WPESESFNDKDMGPIP+ WKGTC G + S +CN+KIIGARFYD EDD
Sbjct: 129 IVGIIDTGIWPESESFNDKDMGPIPSHWKGTCVKGYNFKSSNCNKKIIGARFYDSPEDDE 188
Query: 200 VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGC 259
Q+PRD +GHGTHVA+TAAG V ASYYGLA GTA GGSP SRIAVYRVCS E GC
Sbjct: 189 DEIYQTPRDAIGHGTHVAATAAGAVVSNASYYGLAEGTAKGGSPMSRIAVYRVCS-ENGC 247
Query: 260 TGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGND 319
GSNILAAFDDAIADGVDVLS+SLG +G V L D IA+GAFHAVE+GITVVCSAGND
Sbjct: 248 YGSNILAAFDDAIADGVDVLSISLGTPSGFVSDLNKDTIAIGAFHAVENGITVVCSAGND 307
Query: 320 GPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAK 379
GP+SG+VVN APWI TVAA+TIDRDFESD+VLGGNKVIKGE INF+++ KSPV+PLIY K
Sbjct: 308 GPTSGTVVNDAPWILTVAATTIDRDFESDVVLGGNKVIKGEGINFADIGKSPVHPLIYGK 367
Query: 380 SAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVID 439
SAK D A E ARNC S+ ++KGKIV C NDD + K V+SL G+G+++ D
Sbjct: 368 SAKTDVATEMDARNCRSGSMKKEMIKGKIVFCYNDDFEFPGDEMKQEVQSLEGIGLVLAD 427
Query: 440 DQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSA 499
D++RAVA +Y FP+TVI+S++AAEI +YINS RNPVATILPT +V YKPAP +AYFS+
Sbjct: 428 DKTRAVAFNYKEFPMTVINSRDAAEIESYINSTRNPVATILPTTTVINYKPAPTVAYFSS 487
Query: 500 RGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVV 559
RGPS ++RNILKPDI APGV I+AAW+GNDT A +GKEPPLFN +SGTSM+CPH+SG+
Sbjct: 488 RGPSAISRNILKPDIAAPGVEIIAAWIGNDTQIALKGKEPPLFNALSGTSMACPHVSGLA 547
Query: 560 AAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPG 619
A++K QNP +SPS IKSA+MTTA+Q NN +APITT+SG+ AT YD+GAGE+S +QPG
Sbjct: 548 ASVKSQNPKWSPSAIKSAIMTTASQRNNAKAPITTDSGSIATAYDYGAGEISKNGPMQPG 607
Query: 620 LVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAVSSFD 679
LVYETTT DYLNFLCYYGYD ++IK+I+ T+P F+CPKDS D IS INYPSIAVSS
Sbjct: 608 LVYETTTTDYLNFLCYYGYDTTEIKLISKTLPDGFSCPKDSISDLISTINYPSIAVSSLK 667
Query: 680 GKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 739
+ I+RTVTNV G+ +T Y + P G+ +V P LQFTK+GQ+LSY + F +A
Sbjct: 668 VNKVLNITRTVTNVGGDGDTTYHPIITLPAGIIARVSPVRLQFTKNGQRLSYHLLF-NAT 726
Query: 740 SPLKEDVFGSITWSNGKYKVRSLFVVSS 767
S L E+VFG ITWSNGK+ VR+ V+SS
Sbjct: 727 STL-ENVFGDITWSNGKFNVRTPIVMSS 753
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437188|ref|XP_004136374.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/769 (63%), Positives = 596/769 (77%), Gaps = 13/769 (1%)
Query: 7 LFPVLFLFLGSFFGDAAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSI 66
L V F + A AA+ ++NGVYIVYMG+A+SG R D +LL S+ + +N++
Sbjct: 12 LVCVTFFLVSENVKVADAAEDARNGVYIVYMGSASSG---FRTDFLRLLNSVNR--RNAV 66
Query: 67 IRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSV 126
+ +YKHGF+GFAA LS EA A+ + PGVVS+FPDP+L+LHTT SWDFL QT V ID+
Sbjct: 67 VHTYKHGFTGFAAHLSEHEAQAMRQSPGVVSVFPDPLLKLHTTHSWDFLVSQTSVKIDAN 126
Query: 127 P-SPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNR 185
P S S Q DTIIGILDTG+WPESESFND MGPIP+RWKGTC G+D S +CNR
Sbjct: 127 PKSDPPASSSQPYDTIIGILDTGIWPESESFNDMGMGPIPSRWKGTCMTGDDFTSSNCNR 186
Query: 186 KIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGS 245
KIIGARFY+ + SPRD GHGTHVASTAAG AV ASYYGLAAGTA GGSPGS
Sbjct: 187 KIIGARFYESSESDGIRYHSPRDGAGHGTHVASTAAGSAVANASYYGLAAGTAKGGSPGS 246
Query: 246 RIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRP-LTDDPIALGAFH 304
RIA+YRVC + GC GS+I+ AFDD+IADGVDVLSLSLG + + RP LT DPIA+GAFH
Sbjct: 247 RIAMYRVCMAD-GCRGSSIMKAFDDSIADGVDVLSLSLG-TPSVFRPDLTADPIAIGAFH 304
Query: 305 AVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 364
AVE GITVVCSAGNDGPSSG+VVN APWI TVAASTIDRDFESD+VLG KVIKGE INF
Sbjct: 305 AVEKGITVVCSAGNDGPSSGTVVNDAPWILTVAASTIDRDFESDVVLGNKKVIKGEGINF 364
Query: 365 SNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSV--VD 422
S+LQKSPVYPLI KSAKK +E++AR C DS+ A VKGKIV+C+N + G
Sbjct: 365 SDLQKSPVYPLIEGKSAKKASDSEDSARICSEDSMDEAQVKGKIVICENSVEGGGSDWQS 424
Query: 423 KKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPT 482
+ + VK+LGGVG+++IDD S+ VA + T P+TVIS K+ EIL+Y+NS R PVAT+LPT
Sbjct: 425 QAETVKNLGGVGLVLIDDDSKLVAEKFST-PMTVISKKDGLEILSYVNSSRKPVATVLPT 483
Query: 483 VSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLF 542
++ YKPAPAI YFS+RGP+P NI+KPDI+APGVNILAAW+GND+ P+ + PLF
Sbjct: 484 ETIINYKPAPAITYFSSRGPNPAVLNIIKPDISAPGVNILAAWLGNDSSSTPQATKSPLF 543
Query: 543 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATP 602
NVISGTSMSCPH+SGVVA++K QNPT+SPS I+SA+MTTA QTNNL +P+T ++G+ ATP
Sbjct: 544 NVISGTSMSCPHVSGVVASVKSQNPTWSPSAIRSAIMTTAIQTNNLGSPMTLDTGSVATP 603
Query: 603 YDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGV 662
YD+GAGE+ST +LQPGLVYET+T DYL +LC GY+L+ IK I TTIP F CPK+S
Sbjct: 604 YDYGAGEISTNGALQPGLVYETSTTDYLLYLCGRGYNLTTIKSITTTIPDGFDCPKNSNA 663
Query: 663 DSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQF 722
D ISN+NYP+IAVS GKE + + RTVTNV GN ET+YTV+VDAPQ + VKVIPE+L+F
Sbjct: 664 DYISNMNYPTIAVSELKGKESKKVIRTVTNVGGNGETVYTVSVDAPQEVEVKVIPEKLKF 723
Query: 723 TKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKVRSLFVVSSKSSK 771
K+ +K SYQV FT +S +K FGSITW+NGK++VRS FVV+S+SS+
Sbjct: 724 AKNYEKQSYQVVFTPTVSTMKRG-FGSITWTNGKHRVRSPFVVTSESSE 771
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515528|ref|XP_004164801.1| PREDICTED: cucumisin-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/754 (64%), Positives = 592/754 (78%), Gaps = 13/754 (1%)
Query: 22 AAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARL 81
A AA+ ++NGVYIVYMG+A+SG R D +LL S+ + +N+++ +YKHGF+GFAA L
Sbjct: 32 ADAAEDARNGVYIVYMGSASSG---FRTDFLRLLNSVNR--RNAVVHTYKHGFTGFAAHL 86
Query: 82 SAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVP-SPSLNSQDQESDT 140
S EA A+ + PGVVS+FPDP+L+LHTT SWDFL QT V ID+ P S S Q DT
Sbjct: 87 SEHEAQAMRQSPGVVSVFPDPLLKLHTTHSWDFLVSQTSVKIDANPKSDPPASSSQPYDT 146
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
IIGILDTG+WPESESFND MGPIP+RWKGTC G+D S +CNRKIIGARFY+ +
Sbjct: 147 IIGILDTGIWPESESFNDMGMGPIPSRWKGTCMTGDDFTSSNCNRKIIGARFYESSESDG 206
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
SPRD GHGTHVASTAAG AV ASYYGLAAGTA GGSPGSRIA+YRVC + GC
Sbjct: 207 IRYHSPRDGAGHGTHVASTAAGSAVANASYYGLAAGTAKGGSPGSRIAMYRVCMAD-GCR 265
Query: 261 GSNILAAFDDAIADGVDVLSLSLGGSAGIVRP-LTDDPIALGAFHAVEHGITVVCSAGND 319
GS+I+ AFDD+IADGVDVLSLSLG + + RP LT DPIA+GAFHAVE GITVVCSAGND
Sbjct: 266 GSSIMKAFDDSIADGVDVLSLSLG-TPSVFRPDLTADPIAIGAFHAVEKGITVVCSAGND 324
Query: 320 GPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAK 379
GPSSG+VVN APWI TVAASTIDRDFESD+VLG KVIKGE INFS+LQKSPVYPLI K
Sbjct: 325 GPSSGTVVNDAPWILTVAASTIDRDFESDVVLGNKKVIKGEGINFSDLQKSPVYPLIEGK 384
Query: 380 SAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSV--VDKKDGVKSLGGVGVIV 437
SAKK +E++AR C DS+ A VKGKIV+C+N + G + + VK+LGGVG+++
Sbjct: 385 SAKKASDSEDSARICSEDSMDEAQVKGKIVICENSVEGGGSDWQSQAETVKNLGGVGLVL 444
Query: 438 IDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYF 497
IDD S+ VA + T P+TVIS K+ EIL+Y+NS R PVAT+LPT ++ YKPAPAI YF
Sbjct: 445 IDDDSKLVAEKFST-PMTVISKKDGLEILSYVNSSRKPVATVLPTETIINYKPAPAITYF 503
Query: 498 SARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISG 557
S+RGP+P NI+KPDI+APGVNILAAW+GND+ P+ + PLFNVISGTSMSCPH+SG
Sbjct: 504 SSRGPNPAVLNIIKPDISAPGVNILAAWLGNDSSSTPQATKSPLFNVISGTSMSCPHVSG 563
Query: 558 VVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 617
VVA++K QNPT+SPS I+SA+MTTA QTNNL +P+T ++G+ ATPYD+GAGE+ST +LQ
Sbjct: 564 VVASVKSQNPTWSPSAIRSAIMTTAIQTNNLGSPMTLDTGSVATPYDYGAGEISTNGALQ 623
Query: 618 PGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAVSS 677
PGLVYET+T DYL +LC GY+L+ IK I TTIP F CPK+S D ISN+NYP+IAVS
Sbjct: 624 PGLVYETSTTDYLLYLCGRGYNLTTIKSITTTIPDGFDCPKNSNADYISNMNYPTIAVSE 683
Query: 678 FDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTS 737
GKE + + RTVTNV GN ET+YTV+VDAPQ + VKVIPE+L+F K+ +K SYQV FT
Sbjct: 684 LKGKESKKVIRTVTNVGGNGETVYTVSVDAPQEVEVKVIPEKLKFAKNYEKQSYQVVFTP 743
Query: 738 ALSPLKEDVFGSITWSNGKYKVRSLFVVSSKSSK 771
+S +K FGSITW+NGK++VRS FVV+S+SS+
Sbjct: 744 TVSTMKRG-FGSITWTNGKHRVRSPFVVTSESSE 776
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79318240|ref|NP_001031070.1| Subtilisin-like serine endopeptidase-like protein [Arabidopsis thaliana] gi|332191825|gb|AEE29946.1| Subtilisin-like serine endopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/719 (64%), Positives = 565/719 (78%), Gaps = 5/719 (0%)
Query: 54 LLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWD 113
L+ +M K + N ++ +YKHGFSGFAARL+AEEA ++KKPGVVS+FPDP QLHTT SWD
Sbjct: 16 LINTMFKRRANDLLHTYKHGFSGFAARLTAEEAKVIAKKPGVVSVFPDPHFQLHTTHSWD 75
Query: 114 FLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCN 173
FLK QT V +DS P S + D D+I+GILDTG+WPESESFNDKDMGPIP+RWKGTC
Sbjct: 76 FLKYQTSVKVDSGPPSS--ASDGSYDSIVGILDTGIWPESESFNDKDMGPIPSRWKGTCM 133
Query: 174 AGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGL 233
D S +CNRKIIGAR+Y DD + + RD++GHG+HV+ST AG AV+ ASYYG+
Sbjct: 134 EAKDFKSSNCNRKIIGARYYKNPDDD-SEYYTTRDVIGHGSHVSSTIAGSAVENASYYGV 192
Query: 234 AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPL 293
A+GTA GGS +RIA+Y+VC+P GCTGS+ILAAFDDAIADGVDVLSLSLG A L
Sbjct: 193 ASGTAKGGSQNARIAMYKVCNPG-GCTGSSILAAFDDAIADGVDVLSLSLGAPAYARIDL 251
Query: 294 TDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGG 353
DPIA+GAFHAVE GI V+CSAGNDGP G+V N APWI TVAA+TIDRDFESD+VLGG
Sbjct: 252 NTDPIAIGAFHAVEQGILVICSAGNDGPDGGTVTNTAPWIMTVAANTIDRDFESDVVLGG 311
Query: 354 NKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDN 413
NKVIKGE I+FSN+ KSPVYPLI+ KSAK DA+E +AR CD DSL VKGKIVLC+N
Sbjct: 312 NKVIKGEGIHFSNVSKSPVYPLIHGKSAKSADASEGSARACDSDSLDQEKVKGKIVLCEN 371
Query: 414 DDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKR 473
+D VKS GG G + +DD++RAVAS+YG+FP TVI SKEAAEI +Y+NS +
Sbjct: 372 VGGSYYASSARDEVKSKGGTGCVFVDDRTRAVASAYGSFPTTVIDSKEAAEIFSYLNSTK 431
Query: 474 NPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEA 533
+PVATILPT +V K+ PAPA+AYFS+RGPS LTR+ILKPDITAPGV+ILAAW GND+ +
Sbjct: 432 DPVATILPTATVEKFTPAPAVAYFSSRGPSSLTRSILKPDITAPGVSILAAWTGNDSSIS 491
Query: 534 PEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPIT 593
EGK +NVISGTSM+ PH+S V + IK Q+PT+ PS I+SA+MTTATQTNN + IT
Sbjct: 492 LEGKPASQYNVISGTSMAAPHVSAVASLIKSQHPTWGPSAIRSAIMTTATQTNNDKGLIT 551
Query: 594 TNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKD 653
T +GA ATPYD GAGE+S+TAS+QPGLVYETT DYLNFLCYYGY+++ IK ++ P++
Sbjct: 552 TETGATATPYDSGAGELSSTASMQPGLVYETTETDYLNFLCYYGYNVTTIKAMSKAFPEN 611
Query: 654 FACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNV 713
F CP DS +D IS INYPSI +S F G +T++RTVTNV + E +YTV+V+ P G N+
Sbjct: 612 FTCPADSNLDLISTINYPSIGISGFKGNGSKTVTRTVTNVGEDGEAVYTVSVETPPGFNI 671
Query: 714 KVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKVRSLFVVSSKSSKS 772
+V PE+LQFTK G+KL+YQV SA + LK+DVFG++TWSN KYKVRS V+SS+SS++
Sbjct: 672 QVTPEKLQFTKDGEKLTYQV-IVSATASLKQDVFGALTWSNAKYKVRSPIVISSESSRT 729
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085924|ref|XP_002307740.1| predicted protein [Populus trichocarpa] gi|222857189|gb|EEE94736.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/774 (60%), Positives = 585/774 (75%), Gaps = 11/774 (1%)
Query: 1 MKGLVVLFPVLFLFLGSFFGDAAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLK 60
MK + + + + F + A +G K+GVYIVYMGAA + GS +++HAQLL+S+LK
Sbjct: 1 MKYSALCYVLFLILFDVFLVKSGADEGEKDGVYIVYMGAA-TANGSSKNEHAQLLSSVLK 59
Query: 61 WKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTD 120
+KN+++ SY+HG SGF ARLSA EA +++K PGVVS+FPDPV QLHTTRSWDFLK TD
Sbjct: 60 RRKNALVHSYEHGISGFTARLSAAEAQSIAKNPGVVSVFPDPVYQLHTTRSWDFLKYGTD 119
Query: 121 VLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVS 180
V ID P+ N + D IIGILDTG+WPES+SF+DKDM PIP+ WKGTC D S
Sbjct: 120 VKIDLSPNSDSNLSSRGYDVIIGILDTGIWPESKSFSDKDMDPIPSSWKGTCVEARDFNS 179
Query: 181 FSCNRKIIGARFYD---IEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGT 237
+CNRK+IGAR Y+ +DD + N +PRDM GHGTHVASTAAG V GASY+GLA+GT
Sbjct: 180 SNCNRKLIGARSYNGPGDDDDGLVN--TPRDMNGHGTHVASTAAGIMVPGASYHGLASGT 237
Query: 238 AIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDP 297
A GGS GSRIAVYR+C+P GC GS+ILAAF DAI DGVD+LSLSLG A + +DP
Sbjct: 238 AKGGSLGSRIAVYRICTPN-GCAGSSILAAFSDAIKDGVDILSLSLGSPASRISDFKEDP 296
Query: 298 IALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVI 357
IA+GAFHAVE+GITVVCSAGNDGPS +V N APWI TVAA+TIDR FES++VL KVI
Sbjct: 297 IAIGAFHAVENGITVVCSAGNDGPSEKTVSNGAPWILTVAATTIDRRFESNVVLDKKKVI 356
Query: 358 KGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM 417
KGE+INF+N+ KSPV+PLIYAKSAKK A+ ARNC DS+ G +KGKIV+CDND+D+
Sbjct: 357 KGEAINFANIGKSPVHPLIYAKSAKKAGADARDARNCYPDSMDGKKIKGKIVICDNDEDI 416
Query: 418 GSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVA 477
S K + V++L G+G +++ D++ AS + FP+TVI SK+A EI AY+NS +NPVA
Sbjct: 417 NSYY-KMNEVRNLEGIGAVLVSDKTNGDASDFDEFPMTVIRSKDAVEIFAYLNSTKNPVA 475
Query: 478 TILPTVSVTKYKPAPAIAYFSARGPSPLTRNILK---PDITAPGVNILAAWMGNDTGEAP 534
TILPT V++YKPAPAIAYFS+RGPS ++RNILK PDI APG NILAAW D
Sbjct: 476 TILPTTVVSQYKPAPAIAYFSSRGPSSISRNILKAKPPDIAAPGSNILAAWTAYDGEVTD 535
Query: 535 EGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITT 594
EG+E P F ++SGTSMSCPH+SG+ A +K P++SPS IKSA+MTTA+Q NN++APITT
Sbjct: 536 EGREIPKFKIMSGTSMSCPHVSGMAAVLKSHYPSWSPSAIKSAIMTTASQINNMKAPITT 595
Query: 595 NSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDF 654
GA AT YD+GAGE+ST +LQPGLVYETT +DYL FLCY+GY++S IK+I+ +P F
Sbjct: 596 ELGAIATAYDYGAGEMSTNGALQPGLVYETTAIDYLYFLCYHGYNISTIKVISKDVPAGF 655
Query: 655 ACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVK 714
ACPK+S V+ ISNINYPSIAV + GK R I+RT+TNVAG+ Y++ ++AP GL V
Sbjct: 656 ACPKESKVNMISNINYPSIAVFNLTGKHSRNITRTLTNVAGDGTATYSLTIEAPIGLTVT 715
Query: 715 VIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKVRSLFVVSSK 768
V P LQFTK+GQ+L Y + FT +S L++D+FGSITW K+ VR+ FV SS+
Sbjct: 716 VTPTSLQFTKNGQRLGYHIIFTPTVSSLQKDMFGSITWRTKKFNVRTPFVASSR 769
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061977|ref|XP_002300693.1| predicted protein [Populus trichocarpa] gi|222842419|gb|EEE79966.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/738 (63%), Positives = 579/738 (78%), Gaps = 14/738 (1%)
Query: 37 MGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVV 96
MGAA GS ++DHAQLL+S+LK +KN++++SY HG SGFAARLSA EA +++K PGVV
Sbjct: 1 MGAAT---GSSKNDHAQLLSSVLKRRKNALVQSYVHGISGFAARLSATEAQSIAKTPGVV 57
Query: 97 SIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESF 156
S+F DPV QLHTTRSWDFLK TDV+IDS P+ NS D+IIGILDTG+ PESESF
Sbjct: 58 SVFRDPVYQLHTTRSWDFLKYGTDVVIDSSPNSDSNSSSGGYDSIIGILDTGISPESESF 117
Query: 157 NDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANG---QSPRDMVGHG 213
+ KD+GPIP+RW GTC +D CN KIIGAR Y+ DD + +PRDM+GHG
Sbjct: 118 SGKDLGPIPSRWNGTCVDAHD----FCNGKIIGARAYNSPDDDDDDDGLDNTPRDMIGHG 173
Query: 214 THVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA 273
THVASTAAG V ASYYGLA GTA GGSPGSRIA+YRVC+ YGC GS+ILAAF DAI
Sbjct: 174 THVASTAAGTVVPDASYYGLATGTAKGGSPGSRIAMYRVCT-RYGCHGSSILAAFSDAIK 232
Query: 274 DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWI 333
DGVD+LSLSLG A + +DPIA+GAFHAVE+GITVVCSAGNDGPS +V N APWI
Sbjct: 233 DGVDILSLSLGSPASFMLDYKEDPIAIGAFHAVENGITVVCSAGNDGPSEETVTNVAPWI 292
Query: 334 FTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARN 393
TVAA+TIDR FES++VL G KVIKGE+INF+N+ SPV+PL+Y KSAKK DA E+ ARN
Sbjct: 293 LTVAATTIDRKFESNVVLDGGKVIKGEAINFANIGTSPVHPLVYGKSAKKTDATESEARN 352
Query: 394 CDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFP 453
C+ DS+ G ++KGKIVLCDNDDD S DK+ V+SLGG+G++++DD+ VAS+Y FP
Sbjct: 353 CNPDSMDGEMIKGKIVLCDNDDDSYSFYDKEYEVQSLGGIGLVLVDDKMSGVASNYNEFP 412
Query: 454 LTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILK-- 511
LTVISSK+A IL+Y+NS +NPVATILP+ V++YKPAP IAYFS+RGPS L+RNILK
Sbjct: 413 LTVISSKDAPGILSYLNSTKNPVATILPSTVVSQYKPAPTIAYFSSRGPSSLSRNILKAK 472
Query: 512 -PDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS 570
PDI APGV+ILAAWM NDT +GKE P FN+ISGTSMSCPH+SG+ A +K Q P++S
Sbjct: 473 PPDIAAPGVDILAAWMANDTEVTLKGKESPKFNIISGTSMSCPHVSGMAAVVKSQYPSWS 532
Query: 571 PSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYL 630
PS IKSA+M+TA+Q NN++APITT GA AT YD+GAGE+ST+ +LQPGLVYETTT DYL
Sbjct: 533 PSAIKSAIMSTASQINNMKAPITTELGAIATAYDYGAGEISTSGALQPGLVYETTTTDYL 592
Query: 631 NFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTV 690
NFLCY+GY+ S I++I+ +P F CPK+S VD ISNINYPSIAV + GK+ + I+RT+
Sbjct: 593 NFLCYHGYNTSTIEVISKDVPDGFTCPKESSVDLISNINYPSIAVFNLTGKQSKNITRTL 652
Query: 691 TNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSI 750
TNVAG+ + Y++ ++AP GL + V P LQFTK+ Q+LSYQV FT+ + L +DVFGSI
Sbjct: 653 TNVAGDGNSTYSLTIEAPSGLTITVSPTSLQFTKNSQRLSYQVIFTTTVPSLLKDVFGSI 712
Query: 751 TWSNGKYKVRSLFVVSSK 768
W+N K KVR+ FV SS+
Sbjct: 713 IWTNKKLKVRTPFVASSR 730
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 773 | ||||||
| TAIR|locus:2198656 | 769 | ATSBT5.2 "AT1G20160" [Arabidop | 0.935 | 0.940 | 0.638 | 2.1e-251 | |
| TAIR|locus:2198606 | 780 | AT1G20150 "AT1G20150" [Arabido | 0.937 | 0.929 | 0.568 | 7.4e-224 | |
| TAIR|locus:2171938 | 791 | AT5G45650 "AT5G45650" [Arabido | 0.758 | 0.740 | 0.429 | 2.3e-146 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.895 | 0.866 | 0.433 | 2.6e-145 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.915 | 0.920 | 0.438 | 2e-143 | |
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.912 | 0.913 | 0.424 | 1.8e-142 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.914 | 0.933 | 0.428 | 1.1e-140 | |
| TAIR|locus:2168524 | 693 | AT5G59190 "AT5G59190" [Arabido | 0.608 | 0.678 | 0.449 | 7.5e-135 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.919 | 0.929 | 0.402 | 3.8e-133 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.922 | 0.92 | 0.412 | 1.3e-132 |
| TAIR|locus:2198656 ATSBT5.2 "AT1G20160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2421 (857.3 bits), Expect = 2.1e-251, P = 2.1e-251
Identities = 469/734 (63%), Positives = 574/734 (78%)
Query: 27 GSKNG--VYIVYMGAAASGKGSLRDDHAQLLAS-MLKWKKNSIIRSYKHGFSGFAARLSA 83
GS+NG VYIVYMG+A+S + R AQ+L + M K + N ++ +YKHGFSGFAARL+A
Sbjct: 28 GSRNGDGVYIVYMGSASSAANANR---AQILINTMFKRRANDLLHTYKHGFSGFAARLTA 84
Query: 84 EEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIG 143
EEA ++KKPGVVS+FPDP QLHTT SWDFLK QT V +DS P PS ++ D D+I+G
Sbjct: 85 EEAKVIAKKPGVVSVFPDPHFQLHTTHSWDFLKYQTSVKVDSGP-PS-SASDGSYDSIVG 142
Query: 144 ILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANG 203
ILDTG+WPESESFNDKDMGPIP+RWKGTC D S +CNRKIIGAR+Y DD +
Sbjct: 143 ILDTGIWPESESFNDKDMGPIPSRWKGTCMEAKDFKSSNCNRKIIGARYYKNPDDD-SEY 201
Query: 204 QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSN 263
+ RD++GHG+HV+ST AG AV+ ASYYG+A+GTA GGS +RIA+Y+VC+P GCTGS+
Sbjct: 202 YTTRDVIGHGSHVSSTIAGSAVENASYYGVASGTAKGGSQNARIAMYKVCNPG-GCTGSS 260
Query: 264 ILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS 323
ILAAFDDAIADGVDVLSLSLG A L DPIA+GAFHAVE GI V+CSAGNDGP
Sbjct: 261 ILAAFDDAIADGVDVLSLSLGAPAYARIDLNTDPIAIGAFHAVEQGILVICSAGNDGPDG 320
Query: 324 GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKK 383
G+V N APWI TVAA+TIDRDFESD+VLGGNKVIKGE I+FSN+ KSPVYPLI+ KSAK
Sbjct: 321 GTVTNTAPWIMTVAANTIDRDFESDVVLGGNKVIKGEGIHFSNVSKSPVYPLIHGKSAKS 380
Query: 384 DDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 443
DA+E +AR CD DSL VKGKIVLC+N +D VKS GG G + +DD++R
Sbjct: 381 ADASEGSARACDSDSLDQEKVKGKIVLCENVGGSYYASSARDEVKSKGGTGCVFVDDRTR 440
Query: 444 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPS 503
AVAS+YG+FP TVI SKEAAEI +Y+NS ++PVATILPT +V K+ PAPA+AYFS+RGPS
Sbjct: 441 AVASAYGSFPTTVIDSKEAAEIFSYLNSTKDPVATILPTATVEKFTPAPAVAYFSSRGPS 500
Query: 504 PLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIK 563
LTR+ILKPDITAPGV+ILAAW GND+ + EGK +NVISGTSM+ PH+S V + IK
Sbjct: 501 SLTRSILKPDITAPGVSILAAWTGNDSSISLEGKPASQYNVISGTSMAAPHVSAVASLIK 560
Query: 564 HQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYE 623
Q+PT+ PS I+SA+MTTATQTNN + ITT +GA ATPYD GAGE+S+TAS+QPGLVYE
Sbjct: 561 SQHPTWGPSAIRSAIMTTATQTNNDKGLITTETGATATPYDSGAGELSSTASMQPGLVYE 620
Query: 624 TTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAVSSFDGKEG 683
TT DYLNFLCYYGY+++ IK ++ P++F CP DS +D IS INYPSI +S F G
Sbjct: 621 TTETDYLNFLCYYGYNVTTIKAMSKAFPENFTCPADSNLDLISTINYPSIGISGFKGNGS 680
Query: 684 RTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLK 743
+T++RTVTNV + E +YTV+V+ P G N++V PE+LQFTK G+KL+YQV SA + LK
Sbjct: 681 KTVTRTVTNVGEDGEAVYTVSVETPPGFNIQVTPEKLQFTKDGEKLTYQV-IVSATASLK 739
Query: 744 EDVFGSITWSNGKY 757
+DVFG++TWSN KY
Sbjct: 740 QDVFGALTWSNAKY 753
|
|
| TAIR|locus:2198606 AT1G20150 "AT1G20150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2161 (765.8 bits), Expect = 7.4e-224, P = 7.4e-224
Identities = 424/746 (56%), Positives = 550/746 (73%)
Query: 25 AQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAE 84
++ SK+G YI+YMGAA+S GS +DH +LL+S+L+ + + YKHGFSGFAA LS +
Sbjct: 25 SETSKSGDYIIYMGAASSD-GSTDNDHVELLSSLLQRSGKTPMHRYKHGFSGFAAHLSED 83
Query: 85 EAHALSKKPGVVSIFPDPVLQLHTTRSWDFL---KIQTDVLIDSVPSPSLNSQDQESDTI 141
EAH ++K+PGV+S+FPD +LQLHTTRSWDFL Q D + + S+ E DTI
Sbjct: 84 EAHLIAKQPGVLSVFPDQMLQLHTTRSWDFLVQESYQRDTYFTEM-NYEQESEMHEGDTI 142
Query: 142 IGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNV--SFSCNRKIIGARFYDIEDDV 199
IG LD+G+WPE++SFND+ MGP+P +WKGTC G SF CNRK+IGAR+Y+ +
Sbjct: 143 IGFLDSGIWPEAQSFNDRHMGPVPEKWKGTCMRGKKTQPDSFRCNRKLIGARYYNSSFFL 202
Query: 200 VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGC 259
+ ++PRD +GHGTHVAS AAGQ + ASYYGLA+G GGSP SRIA+YR CS GC
Sbjct: 203 DPDYETPRDFLGHGTHVASIAAGQIIANASYYGLASGIMRGGSPSSRIAMYRACSL-LGC 261
Query: 260 TGSNILAAFDDAIADGVDVLSLSLGGSAGIVRP--LTDDPIALGAFHAVEHGITVVCSAG 317
GS+ILAAFDDAIADGVDV+S+S+G + P L +DP+++G+FHAVE GITVVCS G
Sbjct: 262 RGSSILAAFDDAIADGVDVISISMG-----LWPDNLLEDPLSIGSFHAVERGITVVCSVG 316
Query: 318 NDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGG--NKVIKGESINFSNLQKSPVYPL 375
N GPSS SV N APW+ TVAASTIDR FES+I+LGG N++I+G IN +N+ K+ YPL
Sbjct: 317 NSGPSSQSVFNAAPWMITVAASTIDRGFESNILLGGDENRLIEGFGINIANIDKTQAYPL 376
Query: 376 IYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGV 435
I+A+SAKK DANE AARNC D+L +VKGKIV+CD+D D + K D VK LGG+G+
Sbjct: 377 IHARSAKKIDANEEAARNCAPDTLDQTIVKGKIVVCDSDLDNQVIQWKSDEVKRLGGIGM 436
Query: 436 IVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIA 495
+++DD+S ++ +F +T+I ++ +I++YINS R P+ATI+PT S T + AP+I
Sbjct: 437 VLVDDESMDLSFIDPSFLVTIIKPEDGIQIMSYINSTREPIATIMPTRSRTGHMLAPSIP 496
Query: 496 YFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHI 555
FS+RGP LTR+ILKPDI APGVNILA+W+ D APEGK PPLFN+ SGTSMSCPH+
Sbjct: 497 SFSSRGPYLLTRSILKPDIAAPGVNILASWLVGDRNAAPEGKPPPLFNIESGTSMSCPHV 556
Query: 556 SGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTAS 615
SG+ A +K + P++SP+ I+SA+MTTA Q N + ITT +G ATPYDFGAG+V+
Sbjct: 557 SGIAARLKSRYPSWSPAAIRSAIMTTAVQMTNTGSHITTETGEKATPYDFGAGQVTIFGP 616
Query: 616 LQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNINYPSIAV 675
PGL+YET +DYLNFL YYG+ +IK I+ IP+ FACP+ S ISNINYPSI++
Sbjct: 617 SSPGLIYETNHMDYLNFLGYYGFTSDQIKKISNRIPQGFACPEQSNRGDISNINYPSISI 676
Query: 676 SSFDGKEGRTISRTVTNVA----GNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSY 731
S+F+GKE R +SRTVTNVA G+ +T+YTV++DAP+GL V+VIP L F K G KLSY
Sbjct: 677 SNFNGKESRRVSRTVTNVASRLIGDEDTVYTVSIDAPEGLLVRVIPRRLHFRKIGDKLSY 736
Query: 732 QVTFTSALSPLKEDVFGSITWSNGKY 757
QV F+S + LK+D FGSITWSNG Y
Sbjct: 737 QVIFSSTTTILKDDAFGSITWSNGMY 762
|
|
| TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 2.3e-146, Sum P(2) = 2.3e-146
Identities = 271/631 (42%), Positives = 359/631 (56%)
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFY--DIED- 197
I+G+LD+GVWPES+SFNDK MGP+P WKG C G S CNRKIIGAR+Y E
Sbjct: 155 IVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSHCNRKIIGARYYVKGYERY 214
Query: 198 ----DVVANGQ--SPRDMVGHGTHVASTAAGQAVQGASYYG-LAAGTAIGGSPGSRIAVY 250
+ AN SPRD GHG+H ASTA G+ V GAS G A G+A GG+P +R+A+Y
Sbjct: 215 YGAFNATANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGGFAKGSASGGAPLARLAIY 274
Query: 251 RVC--SPEY----G--CTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGA 302
+ C P G C ++LAA DDAIADGV V+S+S+G + P T D IA+GA
Sbjct: 275 KACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIGTTEPF--PFTQDGIAMGA 332
Query: 303 FHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESI 362
HAV+ I V SAGN GP G++ N APWI TV AST+DR F +VLG IK +SI
Sbjct: 333 LHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFVGGLVLGNGYTIKTDSI 392
Query: 363 NFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVD 422
+ K PL+YA + N C +SL LV GK+VLC GS +
Sbjct: 393 TAFKMDKFA--PLVYASNVVVPGIALNETSQCLPNSLKPELVSGKVVLCLRG--AGSRIG 448
Query: 423 KKDGVKSLGGVGVIV--IDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATIL 480
K VK GG G+I+ I V S P ++ +IL YI + +NP A I
Sbjct: 449 KGMEVKRAGGAGMILGNIAANGNEVPSDSHFVPTAGVTPTVVDKILEYIKTDKNPKAFIK 508
Query: 481 PTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDT-GEAPEGKEP 539
P +V KY+ AP++ FS+RGP+ + NILKPDITAPG+ ILAAW G D+ + +
Sbjct: 509 PGKTVYKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGADSPSKMSVDQRV 568
Query: 540 PLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAA 599
+N+ SGTSMSCPH++G +A +K +P +S + I+SA+MTTA TN+ + PI +G
Sbjct: 569 AGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTNDKKKPIQDTTGLP 628
Query: 600 ATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKD 659
A P+ G+G T + PGLVY+ + YL YG ++ T I F CP
Sbjct: 629 ANPFALGSGHFRPTKAADPGLVYDASYRAYL----LYGCSVN-----ITNIDPTFKCP-- 677
Query: 660 SGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVA-GNNETIYTVAVDAPQGLNVKVIPE 718
S + N NYPSIAV + K+ T+ RTVTNV GN+ + Y +V P G++VK IP
Sbjct: 678 SKIPPGYNHNYPSIAVPNL--KKTVTVKRTVTNVGTGNSTSTYLFSVKPPSGISVKAIPN 735
Query: 719 ELQFTKSGQKLSYQVTFTSALSPLKEDVFGS 749
L F + GQK +++ + PLK V +
Sbjct: 736 ILSFNRIGQKQRFKIV----IKPLKNQVMNA 762
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 2.6e-145, Sum P(2) = 2.6e-145
Identities = 315/727 (43%), Positives = 434/727 (59%)
Query: 49 DDHAQLLASML--KWK-KNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQ 105
D H +LLA +L K K + +I SY +GFAA L A A +++KPGVVS+FP+ +
Sbjct: 72 DSHCELLAGVLGDKEKAREAIFYSYTRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHK 131
Query: 106 LHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQ-ESDTIIGILDTGVWPESESFNDKDMGPI 164
LHTTRSW FL + + P+ + + + DTIIG LDTGVWPESESF D +GPI
Sbjct: 132 LHTTRSWQFLGLAG---VGGAPTGAAWKKARFGEDTIIGNLDTGVWPESESFRDDGLGPI 188
Query: 165 PTRWKGTCNAGNDNVSFSCNRKIIGARFYDIE-DDVVAN-----GQSPRDMVGHGTHVAS 218
P+ W+G C G D+ +FSCNRK+IGARF++ V N +PRD GHGTH S
Sbjct: 189 PSWWRGECQKGQDD-AFSCNRKLIGARFFNKGYASAVGNLNTSLFDTPRDTDGHGTHTLS 247
Query: 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVC-SPEYG--CTGSNILAAFDDAIADG 275
TA G V GAS +G GTA GGSP +R+A YRVC +P G C ++ILAAFD AI DG
Sbjct: 248 TAGGAPVAGASVFGYGNGTASGGSPMARVAAYRVCYTPVNGSECFDADILAAFDAAIHDG 307
Query: 276 VDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFT 335
V VLS+SLGG AG D +A+G+FHAV HGI VVCSAGN GP+ G+V N APW+FT
Sbjct: 308 VHVLSVSLGGDAG---DYFADGLAIGSFHAVRHGIAVVCSAGNSGPAPGTVSNVAPWLFT 364
Query: 336 VAASTIDRDFESDIVLGGNKVIKGESINFSNLQK-SPVYPLIYAKSAKKDDANENAARNC 394
AAST+DR+F + +V K +KG+S++ S L S +P+I + A + +N ++ C
Sbjct: 365 AAASTMDREFPAYVVFNDTK-LKGQSLSASALSPASSSFPMIDSSLAASPNRTQNESQLC 423
Query: 395 DLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA--VASSYGTF 452
L SL VKGKIV+C + V+K + V GG G+++ +D + + +
Sbjct: 424 FLGSLDPEKVKGKIVVCLRG--VNPRVEKGEAVLEAGGAGMVLANDVTTGNEIIADAHVL 481
Query: 453 PLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKP 512
P T I + + +Y+ + ++P TI + KPAP +A FS++GP+ +T ILKP
Sbjct: 482 PATHIKFSDGQILFSYLKNTKSPAGTITRPETRLGTKPAPFMAAFSSQGPNTVTPGILKP 541
Query: 513 DITAPGVNILAAWM-GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSP 571
DITAPGV+++AAW + + K FN SGTSMSCPH++GVV ++ P +SP
Sbjct: 542 DITAPGVSVVAAWTRASAPTDLAFDKRRVAFNSESGTSMSCPHVAGVVGLLRTLRPDWSP 601
Query: 572 SEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLN 631
+ I+SA+MTTA + +N R I +S AAA P+ FGAG VS ++ PGLVY+ +DYLN
Sbjct: 602 AAIRSALMTTAVEVDNERHAILNSSFAAANPFGFGAGHVSPARAMNPGLVYDLAAVDYLN 661
Query: 632 FLCYYGYDLSKIKMIATTI-PKDFACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTV 690
FLC Y+ + + M A F CP + + ++NYPSI V + T+ RTV
Sbjct: 662 FLCSLSYNATVMAMFAGGGGAAPFRCP--ASPPKVQDLNYPSITVVNLTSSA--TVRRTV 717
Query: 691 TNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDV-FGS 749
NV +Y V +P G+ V V P+ L F G+K ++QV F + L D FG+
Sbjct: 718 KNVG--KPGVYKAYVTSPAGVRVTVSPDTLPFLLKGEKKTFQVRFEVTNASLAMDYSFGA 775
Query: 750 ITWSNGK 756
+ W+NGK
Sbjct: 776 LVWTNGK 782
|
|
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1402 (498.6 bits), Expect = 2.0e-143, P = 2.0e-143
Identities = 329/751 (43%), Positives = 440/751 (58%)
Query: 28 SKNGVYIVYMGAAASG-KGSL-RDDHAQLLASMLKWKK---NSIIRSYKHGFSGFAARLS 82
S++ VYIVYMG G + L ++ H +LA++L ++ ++I+ SY+HGFSGFAA L+
Sbjct: 22 SRSNVYIVYMGERHHGLRPELVQEAHHGMLAAVLGSEQAAMDAILYSYRHGFSGFAAVLT 81
Query: 83 AEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPS-----LNSQDQE 137
+A LS PGVV + + VL LHTTRSWDF+ + PSPS L S+ E
Sbjct: 82 GGQAARLSDWPGVVRVVRNRVLDLHTTRSWDFMGVN--------PSPSGGGILLESRFGE 133
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFY---- 193
D+IIG+LDTG+WPES SF D +G +P RWKG C AG + +CNRKIIGA++Y
Sbjct: 134 -DSIIGVLDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVKGY 192
Query: 194 -----DIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIA 248
+ + S RD VGHGTH ASTAAG V AS+ GLA G A GG+ +R+A
Sbjct: 193 EAEYGKMNTSDIYEFMSARDAVGHGTHTASTAAGALVANASFRGLAKGVARGGAQRARLA 252
Query: 249 VYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH 308
VY+VC CT ++ILAAFDDAI DGVDV+S+SLG A + DD +++G+FHAV
Sbjct: 253 VYKVCWATGDCTAADILAAFDDAIHDGVDVISVSLG-QAPPLPAYVDDVLSIGSFHAVAK 311
Query: 309 GITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368
G+ VVCSAGN GP S +V+N APWI TVAA TIDR F + I+LG N G+++ +S
Sbjct: 312 GVVVVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYVGQTL-YSGKH 370
Query: 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVK 428
S ++YA+ D+A++ AR+C SL LVKG +VLC S + VK
Sbjct: 371 PSKSVRIVYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTRAQRSASVAVETVK 430
Query: 429 SLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKY 488
GVGVI ++ +ASS P + + ILAY S RNPVA ++
Sbjct: 431 KARGVGVIFAQFLTKDIASSLD-IPCVQVDYQVGTAILAYTTSMRNPVAQFSFPKTIVGE 489
Query: 489 KPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGT 548
AP +AYFS+RGPS L+ +ILKPDI APGVNILAAW + G F + SGT
Sbjct: 490 LVAPEVAYFSSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISSAIGSVN--FKIDSGT 547
Query: 549 SMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAA--ATPYDFG 606
SMSCPHISGVVA +K +P +SP+ +KSA++TTA + + + + A P+D+G
Sbjct: 548 SMSCPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEMVSEAAPYNDANPFDYG 607
Query: 607 AGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSIS 666
G V+ + PGLVY+ DY+ FLC GY+ S I + PK S
Sbjct: 608 GGHVNPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQTTCQHTPK-----SQL 662
Query: 667 NINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSG 726
N+N PSI + GK T+SRTVTNV G + Y V+AP G++V V P L F +
Sbjct: 663 NLNVPSITIPELRGK--LTVSRTVTNV-GPALSKYRARVEAPPGVDVTVSPSLLTFNSTV 719
Query: 727 QKLSYQVTFTSALSPLKEDVFGSITWSNGKY 757
+KL ++VTF + L FGS+TW +G +
Sbjct: 720 RKLPFKVTFQAKLKVKGRYTFGSLTWEDGTH 750
|
|
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
Identities = 319/751 (42%), Positives = 455/751 (60%)
Query: 33 YIVYMGAAASGKGSLRDD--------HAQLLASMLKWKK---NSIIRSYKHGFSGFAARL 81
Y+VY GA S G + +D H L S ++ ++I SY +GFAA L
Sbjct: 32 YVVYFGAH-SHVGEITEDAMDRVKETHYDFLGSFTGSRERATDAIFYSYTKHINGFAAHL 90
Query: 82 SAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQ-ESDT 140
+ A+ +SK P VVS+FP+ L+LHTTRSWDFL ++ + VPS S+ + + DT
Sbjct: 91 DHDLAYEISKHPEVVSVFPNKALKLHTTRSWDFLGLEHN---SYVPSSSIWRKARFGEDT 147
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
II LDTGVWPES+SF D+ +GPIP+RWKG C D +F CNRK+IGAR+++ +
Sbjct: 148 IIANLDTGVWPESKSFRDEGLGPIPSRWKGICQNQKD-ATFHCNRKLIGARYFN-KGYAA 205
Query: 201 ANGQ------SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCS 254
A G SPRD+ GHG+H STAAG V G S +G GTA GGSP +R+A Y+VC
Sbjct: 206 AVGHLNSSFDSPRDLDGHGSHTLSTAAGDFVPGVSIFGQGNGTAKGGSPRARVAAYKVCW 265
Query: 255 PEY-G--CTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGIT 311
P G C +++LAAFD AI DG DV+S+SLGG +D +A+G+FHA + I
Sbjct: 266 PPVKGNECYDADVLAAFDAAIHDGADVISVSLGGEP---TSFFNDSVAIGSFHAAKKRIV 322
Query: 312 VVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSP 371
VVCSAGN GP+ +V N APW TV AST+DR+F S++VLG K KG+S++ + L +
Sbjct: 323 VVCSAGNSGPADSTVSNVAPWQITVGASTMDREFASNLVLGNGKHYKGQSLSSTALPHAK 382
Query: 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLG 431
YP++ + +AK +A+ A+ C L SL KGKI++C + G V +K V G
Sbjct: 383 FYPIMASVNAKAKNASALDAQLCKLGSLDPIKTKGKILVCLRGQN-GRV-EKGRAVALGG 440
Query: 432 GVGVIVIDDQ--SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYK 489
G+G+++ + + + P T ++SK++ + YI+ + P+A I P+ + K
Sbjct: 441 GIGMVLENTYVTGNDLLADPHVLPATQLTSKDSFAVSRYISQTKKPIAHITPSRTDLGLK 500
Query: 490 PAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMG--NDTGEAPEGKEPPLFNVISG 547
PAP +A FS++GPS + ILKPDITAPGV+++AA+ G + T E + + LFN ISG
Sbjct: 501 PAPVMASFSSKGPSIVAPQILKPDITAPGVSVIAAYTGAVSPTNEQFDPRRL-LFNAISG 559
Query: 548 TSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGA 607
TSMSCPHISG+ +K + P++SP+ I+SA+MTTAT +++ PI + ATP+ FGA
Sbjct: 560 TSMSCPHISGIAGLLKTRYPSWSPAAIRSAIMTTATIMDDIPGPIQNATNMKATPFSFGA 619
Query: 608 GEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISN 667
G V ++ PGLVY+ DYLNFLC GY+ S+I + + +F C S S+ N
Sbjct: 620 GHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGN---NFTC--SSPKISLVN 674
Query: 668 INYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQ 727
+NYPSI V + + T+SRTV NV ++YTV V+ PQG+ V V P L FTK G+
Sbjct: 675 LNYPSITVPNLTSSKV-TVSRTVKNVG--RPSMYTVKVNNPQGVYVAVKPTSLNFTKVGE 731
Query: 728 KLSYQVTFTSALSPL-KEDVFGSITWSNGKY 757
+ +++V + + K VFG + WS+ K+
Sbjct: 732 QKTFKVILVKSKGNVAKGYVFGELVWSDKKH 762
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 322/751 (42%), Positives = 444/751 (59%)
Query: 24 AAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNS--IIRSYKHGFSGFAARL 81
++ S G YIV+M A S S D H+ S L+ +S ++ +Y++ GF+ RL
Sbjct: 23 SSSSSDQGTYIVHM--AKSQMPSSFDLHSNWYDSSLRSISDSAELLYTYENAIHGFSTRL 80
Query: 82 SAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTI 141
+ EEA +L +PGV+S+ P+ +LHTTR+ FL + D P SD +
Sbjct: 81 TQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTA-DLFPEAG-----SYSDVV 134
Query: 142 IGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFY--DIED-- 197
+G+LDTGVWPES+S++D+ GPIP+ WKG C AG + + CNRK+IGARF+ E
Sbjct: 135 VGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTM 194
Query: 198 ---DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCS 254
D +SPRD GHGTH +STAAG V+GAS G A+GTA G +P +R+AVY+VC
Sbjct: 195 GPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCW 254
Query: 255 PEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVC 314
GC S+ILAA D AIAD V+VLS+SLGG + D +A+GAF A+E GI V C
Sbjct: 255 LG-GCFSSDILAAIDKAIADNVNVLSMSLGGG---MSDYYRDGVAIGAFAAMERGILVSC 310
Query: 315 SAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYP 374
SAGN GPSS S+ N APWI TV A T+DRDF + +LG K G S+ + P
Sbjct: 311 SAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLP 370
Query: 375 LIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVG 434
IYA +A + N N C +L VKGKIV+CD + + V K D VK+ GGVG
Sbjct: 371 FIYAGNAS-NATNGNL---CMTGTLIPEKVKGKIVMCDRG--INARVQKGDVVKAAGGVG 424
Query: 435 VIVIDDQSRA---VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPA 491
+I+ + + VA ++ P T + K I Y+ + NP A+I +V KP+
Sbjct: 425 MILANTAANGEELVADAH-LLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPS 483
Query: 492 PAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMG--NDTGEAPEGKEPPLFNVISGTS 549
P +A FS+RGP+ +T NILKPD+ APGVNILAAW G TG A + + FN+ISGTS
Sbjct: 484 PVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVE-FNIISGTS 542
Query: 550 MSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITT-NSGAAATPYDFGAG 608
MSCPH+SG+ A +K +P +SP+ I+SA+MTTA +T P+ +G +TP+D GAG
Sbjct: 543 MSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAG 602
Query: 609 EVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISNI 668
VS T + PGL+Y+ TT DYL FLC Y +I+ ++ +++ C S++++
Sbjct: 603 HVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSR---RNYTCDPSKSY-SVADL 658
Query: 669 NYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQ-GLNVKVIPEELQFTKSGQ 727
NYPS AV+ DG +RTVT+V G Y+V V + G+ + V P L F ++ +
Sbjct: 659 NYPSFAVN-VDGVGAYKYTRTVTSVGGAGT--YSVKVTSETTGVKISVEPAVLNFKEANE 715
Query: 728 KLSYQVTFT-SALSPLKEDVFGSITWSNGKY 757
K SY VTFT + P + FGSI WS+GK+
Sbjct: 716 KKSYTVTFTVDSSKPSGSNSFGSIEWSDGKH 746
|
|
| TAIR|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1027 (366.6 bits), Expect = 7.5e-135, Sum P(2) = 7.5e-135
Identities = 229/509 (44%), Positives = 316/509 (62%)
Query: 136 QESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDI 195
+ESD I+G++D+G+WPESESF+D+ GP P +WKG+C G + F+CN K+IGARFY+
Sbjct: 93 KESDVIVGVIDSGIWPESESFDDEGFGPPPKKWKGSCKGG---LKFACNNKLIGARFYNK 149
Query: 196 EDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSP 255
D S RD GHGTH ASTAAG AVQ AS+YGLA GTA GG P +RIA Y+VC
Sbjct: 150 FAD------SARDEEGHGTHTASTAAGNAVQAASFYGLAQGTARGGVPSARIAAYKVCFN 203
Query: 256 EYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCS 315
C +ILAAFDDAIADGVDV+S+S+ SA V L + +A+G+FHA+ GI S
Sbjct: 204 R--CNDVDILAAFDDAIADGVDVISISI--SADYVSNLLNASVAIGSFHAMMRGIITAGS 259
Query: 316 AGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPL 375
AGN+GP GSV N +PW+ TVAAS DR F +VLG K + G S+N NL + +P+
Sbjct: 260 AGNNGPDQGSVANVSPWMITVAASGTDRQFIDRVVLGNGKALTGISVNTFNLNGTK-FPI 318
Query: 376 IYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGV 435
+Y ++ ++ ++ A C + LVKGKIVLCD D +G ++ + G +GV
Sbjct: 319 VYGQNVSRN-CSQAQAGYCSSGCVDSELVKGKIVLCD--DFLGY----REAYLA-GAIGV 370
Query: 436 IVIDDQSRAVASSYGT--FPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPA 493
IV Q+ + S FP + + ++ I +YI S P A IL T + + AP
Sbjct: 371 IV---QNTLLPDSAFVVPFPASSLGFEDYKSIKSYIESAEPPQAEILRTEEIVD-REAPY 426
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEA---PEGKEPPLFNVISGTSM 550
+ FS+RGPS + +N+LKPD++APG+ ILAA+ + + PE K ++V+SGTSM
Sbjct: 427 VPSFSSRGPSFVIQNLLKPDVSAPGLEILAAFSPVASPSSFLNPEDKRSVRYSVMSGTSM 486
Query: 551 SCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEV 610
+CPH++GV A +K +P +SPS IKSA+MTTAT N + P + +G+G++
Sbjct: 487 ACPHVAGVAAYVKSFHPDWSPSAIKSAIMTTATPMNLKKNP--------EQEFAYGSGQI 538
Query: 611 STTASLQPGLVYETTTLDYLNFLCYYGYD 639
+ T + PGLVYE T DYL LC G+D
Sbjct: 539 NPTKASDPGLVYEVETEDYLKMLCAEGFD 567
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 308/765 (40%), Positives = 436/765 (56%)
Query: 22 AAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNS--IIRSYKHGFSGFAA 79
A + YIV+M +A DDH + + L+ + ++ +Y GF+A
Sbjct: 15 AVVVAAEERATYIVHMAKSAM-PAEYGDDHGEWYGASLRSVSGAGKMLYAYDTVLHGFSA 73
Query: 80 RLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESD 139
RL+A EA ++ GV+++ P+ +LHTTR+ +FL I + D + P + D
Sbjct: 74 RLTAREARDMAAMDGVLAVNPEARYELHTTRTPEFLGIAGN---DGL-FPQSGTA---GD 126
Query: 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYD--IED 197
++G+LDTGVWPES S++D +G +P+ WKG C AG S +CNRK++GARF++ E
Sbjct: 127 VVVGVLDTGVWPESRSYDDAGLGEVPSWWKGECMAGTGFNSSACNRKLVGARFFNRGYEA 186
Query: 198 -----DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRV 252
D +SPRD GHGTH +STAAG AV GAS G A+GTA G +P +R+AVY+V
Sbjct: 187 AMGPMDTTRESRSPRDDDGHGTHTSSTAAGAAVSGASLLGFASGTARGMAPRARVAVYKV 246
Query: 253 CSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITV 312
C GC S+ILA D A+ADG VLSLSLGG A D +A+GAF A+E + V
Sbjct: 247 CWLG-GCFSSDILAGMDAAVADGCGVLSLSLGGGAA---DYARDSVAIGAFAAMEQNVLV 302
Query: 313 VCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPV 372
CSAGN GP + ++ N APWI TV A T+DRDF + + LG K G S+ S
Sbjct: 303 SCSAGNAGPGTSTLSNVAPWITTVGAGTLDRDFPAYVSLGNGKNYTGVSLYAGKALPSTP 362
Query: 373 YPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGG 432
P++YA +A +N A C +L V GKIV+CD + + V K V+ GG
Sbjct: 363 LPIVYAANA----SNSTAGNLCMPGTLTPEKVAGKIVVCDRG--VSARVQKGFVVRDAGG 416
Query: 433 VGVIVIDDQSRA---VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYK 489
G+++ + + VA ++ P + +KE A I AY+ S +P ATI+ + +
Sbjct: 417 AGMVLSNTATNGEELVADAH-LLPAAGVGAKEGAAIKAYVASDPSPTATIVVAGTQVDVR 475
Query: 490 PAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN--DTGEAPEGKEPPLFNVISG 547
P+P +A FS+RGP+ LT ILKPDI APGVNILAAW G TG A + + FN+ISG
Sbjct: 476 PSPVVAAFSSRGPNMLTPEILKPDIIAPGVNILAAWTGKAGPTGIAADTRRVA-FNIISG 534
Query: 548 TSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQT----NNLRAPITTNSGAAATPY 603
TSMSCPH+SG+ A ++ +P +SP+ ++SA+MTTA T + + +GA ATP+
Sbjct: 535 TSMSCPHVSGLAALLRSAHPEWSPAAVRSALMTTAYSTYAGAGDANPLLDAATGAPATPF 594
Query: 604 DFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVD 663
D+GAG V +++ PGLVY+ T DY++FLC Y + I +A + K + C +
Sbjct: 595 DYGAGHVDPASAVDPGLVYDLGTADYVDFLCALNYTSTMIAAVARS--KSYGCTEGKAY- 651
Query: 664 SISNINYPSIAVS---------SFDGKEGRTIS--RTVTNVAGNNETIYTVAVDAPQGLN 712
S+ N+NYPS AV+ G T++ RT+TNV G T Y V+ A G+
Sbjct: 652 SVYNLNYPSFAVAYSTASSQAAESSGAAATTVTHRRTLTNV-GAAGT-YKVSAAAMPGVA 709
Query: 713 VKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKY 757
V V P EL FT +G+K SY V+FT+ P FG + WS+GK+
Sbjct: 710 VAVEPTELAFTSAGEKKSYTVSFTAKSQPSGTAGFGRLVWSDGKH 754
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
Identities = 316/766 (41%), Positives = 444/766 (57%)
Query: 22 AAAAQGSKNGVYIVYMGAAASGKGSLRDDH----AQLLASMLKWKKNSIIRSYKHGFSGF 77
+++A S + YIV++ A K S+ H LAS+ SII +Y F GF
Sbjct: 17 SSSASSSNSLTYIVHVDHEA--KPSIFPTHFHWYTSSLASLTS-SPPSIIHTYDTVFHGF 73
Query: 78 AARLSAEEAHALSKKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQE 137
+ARL++++A L P V+S+ P+ V LHTTRS +FL +++ D + L D
Sbjct: 74 SARLTSQDASQLLDHPHVISVIPEQVRHLHTTRSPEFLGLRST---DK--AGLLEESDFG 128
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARF----Y 193
SD +IG++DTGVWPE SF+D+ +GP+P +WKG C A D +CNRK++GARF Y
Sbjct: 129 SDLVIGVIDTGVWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGARFFCGGY 188
Query: 194 DIED---DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVY 250
+ + + +SPRD GHGTH AS +AG+ V AS G A G A G +P +R+A Y
Sbjct: 189 EATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAAGMAPKARLAAY 248
Query: 251 RVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGI 310
+VC GC S+ILAAFD A+ADGVDV+SLS+GG +V P D IA+GAF A++ GI
Sbjct: 249 KVCWNS-GCYDSDILAAFDTAVADGVDVISLSVGG---VVVPYYLDAIAIGAFGAIDRGI 304
Query: 311 TVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESI-NFSNLQK 369
V SAGN GP + +V N APW+ TV A TIDRDF +++ LG K+I G S+ L
Sbjct: 305 FVSASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGVSVYGGPGLDP 364
Query: 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKS 429
+YPL+Y S D ++ C SL LVKGKIVLCD + S K + V+
Sbjct: 365 GRMYPLVYGGSLLGGDGYSSSL--CLEGSLDPNLVKGKIVLCDRG--INSRATKGEIVRK 420
Query: 430 LGGVGVIVID---DQSRAVASSYGTFPLTVISSKEAAEILAYIN------SKRNPVATIL 480
GG+G+I+ + D VA + P T + + EI YI+ S ++P ATI+
Sbjct: 421 NGGLGMIIANGVFDGEGLVADCH-VLPATSVGASGGDEIRRYISESSKSRSSKHPTATIV 479
Query: 481 PTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN--DTGEAPEGKE 538
+ +PAP +A FSARGP+P T ILKPD+ APG+NILAAW +G + +
Sbjct: 480 FKGTRLGIRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDRIGPSGVTSDNRR 539
Query: 539 PPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNS-G 597
FN++SGTSM+CPH+SG+ A +K +P +SP+ I+SA++TTA +N P+ S G
Sbjct: 540 TE-FNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYTVDNSGEPMMDESTG 598
Query: 598 AAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACP 657
++ D+G+G V T ++ PGLVY+ T+ DY+NFLC Y + I I T D C
Sbjct: 599 NTSSVMDYGSGHVHPTKAMDPGLVYDITSYDYINFLCNSNYTRTNIVTI-TRRQAD--CD 655
Query: 658 KDSGVDSISNINYPSIAV--SSF-DGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVK 714
+ N+NYPS +V + + K RTVTNV G+++++Y + + P+G V
Sbjct: 656 GARRAGHVGNLNYPSFSVVFQQYGESKMSTHFIRTVTNV-GDSDSVYEIKIRPPRGTTVT 714
Query: 715 VIPEELQFTKSGQKLSYQV---TFTSALSPLKEDV-FGSITWSNGK 756
V PE+L F + GQKLS+ V T LSP +V G I WS+GK
Sbjct: 715 VEPEKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVETGHIVWSDGK 760
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 773 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-104 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-29 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 9e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-24 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-24 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 8e-22 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 3e-20 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 4e-20 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-17 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 6e-17 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 7e-16 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 6e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-14 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-14 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 5e-14 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 6e-14 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 5e-13 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 5e-13 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-12 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 3e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 6e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 4e-11 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 5e-11 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-10 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 6e-10 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 7e-10 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 2e-09 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 7e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-08 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 4e-08 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-07 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-07 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-07 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 4e-07 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 4e-07 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 5e-07 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 8e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-06 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-06 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 8e-06 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-05 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 4e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 7e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 7e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 3e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 4e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 9e-04 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 0.002 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 0.002 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 0.004 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-104
Identities = 125/244 (51%), Positives = 148/244 (60%), Gaps = 14/244 (5%)
Query: 104 LQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGP 163
QLHTTRS DFL + + L + + IIG+LDTG+WPE SF D GP
Sbjct: 1 YQLHTTRSPDFLGLPG-----AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGP 55
Query: 164 IPTRWKGTCNAGNDNVSFSCNRKIIGARFY-DIEDDVVANGQ-----SPRDMVGHGTHVA 217
P W G C G D FSCN K+IGAR++ D D SPRD GHGTH A
Sbjct: 56 YPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTA 115
Query: 218 STAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVD 277
STAAG V AS G A GTA G +P +RIAVY+VC P+ GC GS+ILAA D AIADGVD
Sbjct: 116 STAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVD 175
Query: 278 VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVA 337
V+S S+GG + +DPIA+ HAVE GI V SAGN GP + +V N APW+ TVA
Sbjct: 176 VISYSIGGGSP---DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232
Query: 338 ASTI 341
AST+
Sbjct: 233 ASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-29
Identities = 40/74 (54%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 510 LKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTF 569
LKPDI APGV+ILAAW G P F ISGTSM+ PH++GV A +K +P +
Sbjct: 236 LKPDIAAPGVDILAAWTPE--GADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDW 293
Query: 570 SPSEIKSAVMTTAT 583
SP+ IKSA+MTTA
Sbjct: 294 SPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 9e-27
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 348 DIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGK 407
+ LG K I G+S+ NL+ YPL+Y + ++ + A C SL + VKGK
Sbjct: 1 VVTLGNGKTIVGQSLYPGNLKT---YPLVYKSA----NSGDVDASLCLPGSLDPSKVKGK 53
Query: 408 IVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR--AVASSYGTFPLTVISSKEAAEI 465
IVLCD + S V K D VK+ GG G+I+ +D + V + P + ++ I
Sbjct: 54 IVLCDRGGNT-SRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAI 112
Query: 466 LAYINSKRNPVATI 479
L+YINS NP ATI
Sbjct: 113 LSYINSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 68/223 (30%), Positives = 97/223 (43%), Gaps = 48/223 (21%)
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
+ ++DTG+ + D+G N K+ G YD DD
Sbjct: 5 KVAVIDTGI-----DYTHPDLGG----------------PGFPNDKVKGG--YDFVDDDY 41
Query: 201 ANG-----------QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAV 249
S D GHGTHVA AG V + G+A P + +
Sbjct: 42 DPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVNVGTIKGVA--------PKADLYA 93
Query: 250 YRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHG 309
Y+V P T I+AA + A+ DG+DV++LSLG S DDP A+ +AV+ G
Sbjct: 94 YKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVN----GPDDPDAIAINNAVKAG 149
Query: 310 ITVVCSAGNDGPSSGSVVN--FAPWIFTVAASTIDRDFESDIV 350
+ VV +AGN GP+ ++ + AP TV AST+ E+D V
Sbjct: 150 VVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADVAEADTV 192
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 63/222 (28%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDV 199
+ ++DTGV P+ + G + GND+ DD
Sbjct: 1 VTVAVIDTGVDPDHPDLDG---------LFGGGDGGNDD------------------DDN 33
Query: 200 VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGC 259
P D GHGTHVA A A G +G +PG+++ +V +
Sbjct: 34 ENGPTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKVLDGDGSG 84
Query: 260 TGSNILAAFDDAIAD-GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE-HGITVVCSAG 317
+ S+I AA D A AD G DV++LSLGG + I +A+ G+ VV +AG
Sbjct: 85 SSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID----YALAKLGVLVVAAAG 140
Query: 318 NDGPSSGSVVNF---APWIFTVAASTIDRDFESDIVLGGNKV 356
NDGP G+ + + +P + V A D S GG V
Sbjct: 141 NDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAGV 182
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 8e-22
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 18/133 (13%)
Query: 483 VSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLF 542
+V A + S+RGP + +KPDI APGV+I++ G+ TG A
Sbjct: 181 STVADVAEADTVGPSSSRGPPTSD-SAIKPDIVAPGVDIMSTAPGSGTGYARM------- 232
Query: 543 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATP 602
SGTSM+ PH++G A +K +P +SP++IK+A+M TA + + G
Sbjct: 233 ---SGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYD-------SDGVVYPV 282
Query: 603 YDFGAGEVSTTAS 615
GAG V +
Sbjct: 283 SRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-20
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 32 VYIVYMGAAASGKGSLRDDHAQLLASMLKWK-KNSIIRSYKHGFSGFAARLSAEEAHALS 90
YIV S K ++ H AS + SI+ SYKHGF+GFAA+L+ EEA L
Sbjct: 1 TYIVKFKDGVS-KAAVFSSHKSWHASSKEEAAGASILYSYKHGFNGFAAKLTEEEAEKLR 59
Query: 91 KKPGVVSIFPDPVLQLH 107
K P V + PD V++LH
Sbjct: 60 KHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 54/216 (25%), Positives = 82/216 (37%), Gaps = 48/216 (22%)
Query: 142 IGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVA 201
+ +LDTG+ F+ R I A F + V
Sbjct: 6 VAVLDTGIDAPHPDFD--------------------------GRIIRFADFVN----TVN 35
Query: 202 NGQSPRDMVGHGTHVASTAAG-QAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
+P D GHGTHVA AG Y G+A PG+ + +V +
Sbjct: 36 GRTTPYDDNGHGTHVAGIIAGSGRASNGKYKGVA--------PGANLVGVKVLDDSGSGS 87
Query: 261 GSNILAAFDDAIAD----GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSA 316
S+I+A D + + + V++LSLG +DP+ + GI VV +A
Sbjct: 88 ESDIIAGIDWVVENNEKYNIRVVNLSLGAPPD--PSYGEDPLCQAVERLWDAGIVVVVAA 145
Query: 317 GNDGPSSGSVVN--FAPWIFTVAASTIDRDFESDIV 350
GN GP G++ + +P + TV A D D +
Sbjct: 146 GNSGPGPGTITSPGNSPKVITVGAVD-DNGPHDDGI 180
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
I+YFS+RGP+ +KPD+ APG NI++ A G + +SGTSM+ P
Sbjct: 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSG---YFEMSGTSMATP 234
Query: 554 HISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583
H+SG +A + NP +P E+K + TAT
Sbjct: 235 HVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 6e-17
Identities = 61/227 (26%), Positives = 91/227 (40%), Gaps = 46/227 (20%)
Query: 140 TIIGILDTGVWP----------------ESESFNDKDMGPIPTRWKGTCNAGNDNVSFSC 183
++ ++D+GV P E K G ++ N+ V F+
Sbjct: 13 MVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYY------NEKVPFAY 66
Query: 184 NRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSP 243
N + D DD++ D HG HVA AG + + G+ G A P
Sbjct: 67 N-------YADNNDDILDED----DGSSHGMHVAGIVAGNGDEEDNGEGIK-GVA----P 110
Query: 244 GSRIAVYRVCS-PEYG-CTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALG 301
+++ +V S PE G A +DA+ G DV+++SLG +AG V DDP
Sbjct: 111 EAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDL--DDPEQQA 168
Query: 302 AFHAVEHGITVVCSAGNDG----PSSGSVVNFAPWIFTVAASTIDRD 344
A E G+ VV +AGNDG +S + P TV + D
Sbjct: 169 IKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADD 215
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-16
Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 21/119 (17%)
Query: 206 PRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSN-- 263
P D GHGTHVA A + YG G +P + + YRV +GC+GS
Sbjct: 64 PMDCQGHGTHVAGIIAANP----NAYGF-----TGVAPEATLGAYRV----FGCSGSTTE 110
Query: 264 --ILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDG 320
I+AAF A DG DV++ SLGG +G ++DP A+ A V+ G+ V +AGNDG
Sbjct: 111 DTIIAAFLRAYEDGADVITASLGGPSG----WSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 45/211 (21%), Positives = 69/211 (32%), Gaps = 42/211 (19%)
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
+G+LDTG+ + R D +
Sbjct: 1 TVGVLDTGIDVNHPDLSG-------------------RYIGLAYRNGYDFVDNDPDPTPD 41
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
+ GHGTHVA A G+ G+A P +++ +V G T
Sbjct: 42 DDNN------GHGTHVAGIIAAGDNNGSGGVGVA--------PNAKLESVKVLPGSGG-T 86
Query: 261 GSNILAAFDDAI--ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFH-AVEHGITVVCSAG 317
S + A + A + + V+++SLG I A + A G V +AG
Sbjct: 87 DSELAGAIEWAAERPNDIRVINMSLGPV-DGPPSSWSSAIDELAVNGADNKGSLFVVAAG 145
Query: 318 NDGPS-SGSVVNF---APWIFTVAASTIDRD 344
N G + V+ A I TV A T +
Sbjct: 146 NGGDYADNNPVSDPASANNIITVGAVTENGT 176
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 202 NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGC-T 260
+ +D GHGTHVA A +G +P + + +V + + G T
Sbjct: 32 DNNDYQDGNGHGTHVAGIIAAL---------DNGVGVVGVAPEADLYAVKVLN-DDGSGT 81
Query: 261 GSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFH-AVEHGITVVCSAGND 319
S+I+A + AI +G+D++++SLGG + D P A A GI VV +AGN
Sbjct: 82 YSDIIAGIEWAIENGMDIINMSLGGPS-------DSPALREAIKKAYAAGILVVAAAGNS 134
Query: 320 GPSSGSVVNFAPWIFTVAASTIDRDFE 346
G S A + +A +D +
Sbjct: 135 GNGDSSYDYPAKYPSVIAVGAVDSNNN 161
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 14/78 (17%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+A FS+RGPS R +KPDI+APGVNI +A G G SGTSM+
Sbjct: 186 VLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPGGGYG------------SSSGTSMAA 231
Query: 553 PHISGVVAAIKHQNPTFS 570
PH++GV A + NP+
Sbjct: 232 PHVAGVAALLWSANPSLI 249
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-14
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 22/106 (20%)
Query: 493 AIAYFSARGPSPLTR-NILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMS 551
+IA FS RGP TR +KPDI APGVNIL A G + SGTS++
Sbjct: 358 SIAIFSGRGP---TRDGRIKPDIAAPGVNILTASPGGG------------YTTRSGTSVA 402
Query: 552 CPHISGVVA-----AIKHQN-PTFSPSEIKSAVMTTATQTNNLRAP 591
++G A I N P +IK+ ++ A + P
Sbjct: 403 AAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYP 448
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 46/154 (29%), Positives = 59/154 (38%), Gaps = 39/154 (25%)
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
G D GHGTHVA T G YG+A + +AV +V T
Sbjct: 54 VGGDPDSDCNGHGTHVAGTVGG------KTYGVAKKANL-------VAV-KVLDCNGSGT 99
Query: 261 GSNILAAFDDAIADGVD-----VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCS 315
S I+A + D V ++SLGG A D +A AV G+ VV +
Sbjct: 100 LSGIIAGLEWVANDATKRGKPAVANMSLGGGA---STALDAAVA----AAVNAGVVVVVA 152
Query: 316 AGNDG-------PSSGSVVNFAPWIFTVAASTID 342
AGN P+S AP TV A+ D
Sbjct: 153 AGNSNQDACNYSPAS------APEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 12/93 (12%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
IA FS G + +KPDI APG NIL++ G D G ++ SGTSM+ P
Sbjct: 177 IADFSNYGGP---VDGIKPDIVAPGGNILSSGPGGDLGG---------YDSHSGTSMAAP 224
Query: 554 HISGVVAAIKHQNPTFSPSEIKSAVMTTATQTN 586
++G A + NP+ +P +++ ++TTAT
Sbjct: 225 LVAGAAALLLSANPSLTPETLRALLVTTATDLG 257
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
DI APGV+IL+AW+G+DT +SGTSM+ PH++G+ A + P SP+
Sbjct: 194 DIFAPGVDILSAWIGSDTA----------TATLSGTSMAAPHVAGLAAYLLSLGPDLSPA 243
Query: 573 EIKSAVMTTATQ 584
E+K+ ++ AT+
Sbjct: 244 EVKARLLNLATK 255
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 57/210 (27%), Positives = 76/210 (36%), Gaps = 54/210 (25%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
S + ++DTGV D+ K +
Sbjct: 28 SGVTVAVVDTGV-----DPTHPDLL---------------------KVKFVLGY------ 55
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D V N D GHGTHVA A G G+A G +P ++I +V
Sbjct: 56 DFVDNDSDAMDDNGHGTHVAGIIAAATNNG---TGVA-----GVAPKAKIMPVKV----L 103
Query: 258 GCTGSNILAAFDDAI---AD-GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVV 313
GS LA + I AD G V++LSLGG G + +A G+ VV
Sbjct: 104 DANGSGSLADIANGIRYAADKGAKVINLSLGGGLG------STALQEAINYAWNKGVVVV 157
Query: 314 CSAGNDGPSSGSVVNFAPWIFTVAASTIDR 343
+AGN+G SS S P VAA+ D
Sbjct: 158 AAAGNEGVSSVSYPAAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 1e-12
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 20/88 (22%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
A FS+ GP + ++ APGV+IL+ + ND + +SGTSM+ P
Sbjct: 162 RASFSSTGP--------EVELAAPGVDILSTYPNND------------YAYLSGTSMATP 201
Query: 554 HISGVVAAIKHQNPTFSPSEIKSAVMTT 581
H++GV A + + P + ++++ A+ T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPL 541
+SV A+A FS G D+ APGV+IL+ G G
Sbjct: 177 IISVAATDSNDALASFSNYGKK-------TVDLAAPGVDILSTSPGGGYGY--------- 220
Query: 542 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583
+SGTSM+ PH++G A + NP + ++IK A++++A
Sbjct: 221 ---MSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 44/204 (21%), Positives = 71/204 (34%), Gaps = 49/204 (24%)
Query: 142 IGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVA 201
+G++D+G+ F + + A +Y +D A
Sbjct: 7 VGVIDSGIDLSHPEFAGR---------------------------VSEASYYVAVND--A 37
Query: 202 NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTG 261
S D HGTHVA A G + G A P + + R +
Sbjct: 38 GYASNGDGDSHGTHVAGVIAAARDGGGMH-----GVA----PDATLYSARASASAGSTFS 88
Query: 262 -SNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF---------HAVEHGIT 311
++I AA+D A GV +++ S GG+ I T + A G
Sbjct: 89 DADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGL 148
Query: 312 VVCSAGNDGPSSGSVVN-FAPWIF 334
V +AGNDG ++ S+ P++
Sbjct: 149 FVFAAGNDGQANPSLAAAALPYLE 172
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 190 ARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAV 249
A++ D +++ + D GHGTHV+ T G G A G IG +P + +
Sbjct: 23 AQWADFDENRRISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLH 73
Query: 250 YRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHG 309
+V G + S I+A + A+ DV+S+SLGG+ PL + AL + G
Sbjct: 74 GKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSN----QTG 128
Query: 310 ITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRD 344
V SAGN+G + A +V A +DRD
Sbjct: 129 ALFVVSAGNEGHGTSGSPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 6e-12
Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 40/215 (18%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
D ++ ++DTGV +N D+ W + I D
Sbjct: 2 GDVVVAVIDTGV-----DYNHPDL--KDNMWVNPGEIPGNG---------IDDDGNGYVD 45
Query: 198 DV-----VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRV 252
D+ V N P D GHGTHVA G G+A G + +I +
Sbjct: 46 DIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNNG---IGIA-----GVAWNVKIMPLKF 97
Query: 253 CSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITV 312
+ T S+ + A D A+ G +++ S GG D IA A++ GI
Sbjct: 98 LGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP--SQALRDAIA----RAIDAGILF 151
Query: 313 VCSAGNDGPSSGSVVNF-----APWIFTVAASTID 342
V +AGNDG ++ + I +VAA+ +
Sbjct: 152 VAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 4e-11
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 35/152 (23%)
Query: 474 NPVATILPTVSV------TKYKPAPAIAYFSARGPSP-LTRNILKPDITAPGVNILAAWM 526
AT ++V ++ FS+ GP+P L LKPDITAPG NI +
Sbjct: 208 GSPATADDVLTVASANKKVPNPNGGQMSGFSSWGPTPDLD---LKPDITAPGGNIYST-- 262
Query: 527 GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVA----AIKHQNPTFSPSE----IKSAV 578
ND SGTSM+ PH++G A +K + P S E +K+ +
Sbjct: 263 VNDNTYGYM----------SGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLL 312
Query: 579 MTTATQTNNLRAPITTNSGAAATPYDFGAGEV 610
M TAT + ++ +P GAG +
Sbjct: 313 MNTATPPL-----DSEDTKTYYSPRRQGAGLI 339
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 46/134 (34%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 192 FYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYR 251
+ E + D +GHGT VA A A G G +PG I YR
Sbjct: 35 YDGKEAGETGDINDIVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYR 82
Query: 252 VCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAF-----HAV 306
V S I+ A DA DGVDV++LSLGG I DD + A+ +A
Sbjct: 83 VFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAK 142
Query: 307 EHGITVVCSAGNDG 320
G VV +AGNDG
Sbjct: 143 SKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 20/139 (14%)
Query: 495 AYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPH 554
+YFS+ GP+ LKPD+ APG NIL+ + G + V+SGTSM+ P+
Sbjct: 189 SYFSSWGPTNELY--LKPDVAAPGGNILSTYPLAGGG----------YAVLSGTSMATPY 236
Query: 555 ISGVVA-AIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTT 613
++G A I+ ++ SP+E++ + +TA T+ A GAG V+
Sbjct: 237 VAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDG--TSALPDLAPVAQQGAGLVNAY 294
Query: 614 ASLQPGLVYETTTLDYLNF 632
+L Y TTTL +
Sbjct: 295 KAL-----YATTTLSPSSL 308
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 6e-10
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 511 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS 570
DI APG +IL++ G + +SGTSM+ P ++GV A + NP +
Sbjct: 181 GVDIAAPGGDILSSPTTGGGG----------YATLSGTSMAAPIVAGVAALLLSANPDLT 230
Query: 571 PSEIKSAVMTT 581
P+++K+A+++T
Sbjct: 231 PAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 7e-10
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
A + SP KPD+ APGV++ +A G + + +SGTSM+ P
Sbjct: 174 GASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGANGDGQ--------YTRLSGTSMAAP 224
Query: 554 HISGVVAAIKHQNPTFSPSEIKSAVMTTA 582
H++GV A + +P SP +IK A+ TA
Sbjct: 225 HVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
N ++ D +GHGT VA A Q +G +P + I ++RV +
Sbjct: 36 TNEKTLDDGLGHGTFVAGVIASSREQ-----------CLGFAPDAEIYIFRVFTNNQVSY 84
Query: 261 GSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDG 320
S L AF+ AI +DVL+LS+GG + +P D L A + I +V + GNDG
Sbjct: 85 TSWFLDAFNYAILTKIDVLNLSIGGPDFMDKPFVDKVWELTA-----NNIIMVSAIGNDG 139
Query: 321 PSSGSVVNFA 330
P G++ N A
Sbjct: 140 PLYGTLNNPA 149
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
+A FS+RGP+ +KPD+ APG IL+A G + SGTSM+ P
Sbjct: 201 VASFSSRGPT--YDGRIKPDLVAPGTGILSARSGGGGIGDTSD---SAYTSKSGTSMATP 255
Query: 554 HISGVVAAI 562
++G A +
Sbjct: 256 LVAGAAALL 264
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 512 PDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSP 571
DI APGV+I++A G + +SGTSM+ PH++GV A P
Sbjct: 213 VDIAAPGVDIVSAAPGG------------GYRSMSGTSMATPHVAGVAALWAEALPKAGG 260
Query: 572 SEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEV 610
+ + + L A TT D G G
Sbjct: 261 RALAALLQ------ARLTAARTTQFAPGLDLPDRGVGLG 293
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
A FS+ GP+ R LKPD+ A G I +GTS SCP
Sbjct: 186 KASFSSIGPTADGR--LKPDVMALGTGIYVI------------NGDGNITYANGTSFSCP 231
Query: 554 HISGVVAAIKHQNPTFSPSEIKSAVMTTA 582
I+G++A + +P ++ +IK A++ +A
Sbjct: 232 LIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 50/170 (29%), Positives = 64/170 (37%), Gaps = 37/170 (21%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSR-IAVYRVCSPE 256
D V N P D GHGTH T G G IG +PG+R IA R
Sbjct: 40 DPVGNTPLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIAC-RALD-R 88
Query: 257 YGCTGSNILAAFDDAIA----DGV--------DVLSLSLGGSAGIVRPLTDDPIALGAFH 304
G ++ L +A G DV++ S GG +G D+ A
Sbjct: 89 NGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG------DNEWLQPAVA 142
Query: 305 AVEH-GITVVCSAGNDGPSSGSVVNFA---PWIFTVAASTIDR---DFES 347
A GI V +AGNDGP ++ P F V A+ + DF S
Sbjct: 143 AWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADFSS 192
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D++APG IL+ D + +SGTSM+ PH++GV A + Q P S S
Sbjct: 200 DVSAPGGGILSTTPDGD------------YAYMSGTSMATPHVAGVAALLYSQGPL-SAS 246
Query: 573 EIKSAVMTTATQTN 586
E++ A+ TA
Sbjct: 247 EVRDALKKTADDIG 260
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 477 ATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAP-GVNILAAWMGNDTGEAPE 535
T + R P+P R KPD+TAP GVN +
Sbjct: 158 NTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQ--KPDVTAPDGVNGTVDG---------D 206
Query: 536 GKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583
G PP F GTS + PH +GV A + NP +P++I+ A+ +TA
Sbjct: 207 GDGPPNF---FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTAL 251
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D V +G D GHGT VA AG+ +G + G+A P +RI R S +
Sbjct: 39 DFVGSGDGTDDCDGHGTLVAGIIAGRPGEGDGFSGVA--------PDARILPIRQTSAAF 90
Query: 258 ----GCTGSNILAAFDDAI---AD-GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHG 309
G +G L AI AD G DV+++SL D + +A++ G
Sbjct: 91 EPDEGTSGVGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKG 150
Query: 310 ITVVCSAGNDGP--SSGSVVNFAPWIFTVAASTIDRD 344
+ VV +AGN G +VV A + +A +IDRD
Sbjct: 151 VVVVAAAGNTGGDGQKTTVVYPAWYPGVLAVGSIDRD 187
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 31/141 (21%)
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
G+ +D GHGTH A T G+ V G G + G+ IA+ + G
Sbjct: 37 VGGEDVQDGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEIALIGKVLGDGGGG 87
Query: 261 GSNILAAFDDAIADGVDVLSLSLGGS----------------------AGIVRPLTDDPI 298
ILA A+A+G DV+S+SLG R
Sbjct: 88 DGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMT 147
Query: 299 ALGAFHAVEHGITVVCSAGND 319
+ A A+ G +V +AGN+
Sbjct: 148 LVAAQAALARGTLIVAAAGNE 168
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 43/142 (30%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 211 GHGTHVASTAAGQAVQGASYYGLAAGTAIGGS--PGSRIAVYRVCSPEYGCTGSNILAAF 268
GHGTHVA T A G G G A G PG +I ++ + Y + AA
Sbjct: 62 GHGTHVAGTIAAVNNNG----GGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAI 117
Query: 269 DDAIADGVDVLSLSLGG-SAGIVRPLTDDPIALGAFHAVEH-------GITVVCSAGNDG 320
A +G +L S GG GI PL D + +E+ G VV SAGN
Sbjct: 118 VYAADNGAVILQNSWGGTGGGIYSPLLKDAFD----YFIENAGGSPLDGGIVVFSAGNSY 173
Query: 321 PSSGSVVNFAPWIFTVAASTID 342
P + VAA +
Sbjct: 174 TDEHRFPAAYPGVIAVAALDTN 195
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 29/138 (21%)
Query: 195 IEDD-----VVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAV 249
I DD +V + + HGTHVA AA + G+A G I +I
Sbjct: 171 IYDDGNLLSIVTDSGA------HGTHVAGIAAAHFPEEPERNGVAPGAQI---VSIKIGD 221
Query: 250 YRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSA-----GIVRPLTDDPIALGAFH 304
R+ S E TG+ ++ A AI D++++S G + G + L ++ +
Sbjct: 222 TRLGSME---TGTALVRAMIAAIETKCDLINMSYGEATHWPNSGRIIELMNEAVN----- 273
Query: 305 AVEHGITVVCSAGNDGPS 322
+HG+ V SAGN+GP+
Sbjct: 274 --KHGVIFVSSAGNNGPA 289
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 467 AYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN-ILAAW 525
+Y + R P A ++V A FS G DI APGV IL+
Sbjct: 172 SYTDEHRFPAAYP-GVIAVAALDTNDNKASFSNYG--------RWVDIAAPGVGTILSTV 222
Query: 526 MGND-TGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP-TFSPSEIKSAVMTT 581
D G + +SGTSM+ PH+SGV A + + P F+P +I+ + +
Sbjct: 223 PKLDGDGGGN-------YEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.5 bits (122), Expect = 1e-06
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 17/165 (10%)
Query: 481 PTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPP 540
++V + +A FS G DI APGVNIL+ N
Sbjct: 305 NVIAVGALDLSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDGAD---- 354
Query: 541 LFNVISGTSMSCPHISGVVAAIKHQNPTF-SPSEIKSAVMTTATQTN-----NLRAPITT 594
+ +SGTSM+ PH+SGV A + NP +P+++++ ++TTA T NL
Sbjct: 355 -YVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLA 413
Query: 595 NSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYD 639
N AAAT G + T S Q + T L
Sbjct: 414 NLDAAATDVAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPA 458
|
Length = 508 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 13/146 (8%)
Query: 197 DDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256
+ V+N D+ GHGT A AA G G+A G +PG+++ R+
Sbjct: 27 WNFVSNNDPTSDIDGHGTACAGVAAAVGNNGL---GVA-----GVAPGAKLMPVRIADSL 78
Query: 257 YGCTGSNILAAFDDAIADGVDVLSLSLGGSAG--IVRPLTDDPIALGAFHAVEHGITVVC 314
S+I A A +G DV+S S GGS + D+ G G V+
Sbjct: 79 GYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK---GGVVLF 135
Query: 315 SAGNDGPSSGSVVNFAPWIFTVAAST 340
+AGN G S S P + VAA+
Sbjct: 136 AAGNSGRSVSSGYAANPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPL 541
++V A +S GP+ D++APG + + G+ ++ G P
Sbjct: 191 VIAVGATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPG 242
Query: 542 ---FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576
+ + GTSM+ PH++GV A +K NP+ +P++I+S
Sbjct: 243 GSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIES 280
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 50/217 (23%), Positives = 77/217 (35%), Gaps = 54/217 (24%)
Query: 139 DTIIGILDTGVWPESESFNDKDMGPIPTR----WKGTCNAGNDNVSFSCNRKIIGARFYD 194
++GI+DTG+ F ++D TR W T G + G + +
Sbjct: 5 GVLVGIIDTGIDYLHPEFRNEDGT---TRILYIWDQTIPGGPPPGGY-----YGGGEYTE 56
Query: 195 IEDDVVANGQSP------RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIA 248
+ +P RD GHGTHVA AAG + G+A P + +
Sbjct: 57 EIINAALASDNPYDIVPSRDENGHGTHVAGIAAGNGDNNPDFKGVA--------PEAELI 108
Query: 249 V---------YRVCSPEYGCTGSN-ILAAFD--DAIADGVD---VLSLSLG---GS---A 287
V R + I+ A A ++ V+++SLG GS
Sbjct: 109 VVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDGT 168
Query: 288 GIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG 324
++ D I+ GI VV AGN+G +
Sbjct: 169 SLLERYIDA-ISRLR------GIAVVVGAGNEGNTQH 198
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 514 ITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSE 573
+ APG NI + G + +SGTS + PH+SG A + + P + +
Sbjct: 208 LAAPGENIYSTDPDGGNG----------YGRVSGTSFAAPHVSGAAALLAQKFPWLTADQ 257
Query: 574 IKSAVMTTAT 583
++ ++TTAT
Sbjct: 258 VRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 49/189 (25%), Positives = 69/189 (36%), Gaps = 55/189 (29%)
Query: 184 NRKIIGAR-FYDIEDDVVANGQSPRDMVGHGTHVASTAAGQ-------AVQGASYYGLAA 235
N +I+G F D ++ HGT V ST AG ASYY A
Sbjct: 26 NLRILGEYDFVDNSNNTNYTDDD------HGTAVLSTMAGYTPGVMVGTAPNASYY--LA 77
Query: 236 GTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTD 295
T S E N +AA + A + GVD++S SLG + D
Sbjct: 78 RTEDVAS-------------ETPVEEDNWVAAAEWADSLGVDIISSSLGYTTF------D 118
Query: 296 DP---------------IALGAFHAVEHGITVVCSAGNDGPSSGSVVNF---APWIFTVA 337
+P I+ A A G+ VV SAGN+G + + A + +V
Sbjct: 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVG 178
Query: 338 ASTIDRDFE 346
A +D +
Sbjct: 179 A--VDANGN 185
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 49/200 (24%)
Query: 142 IGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVA 201
I ILD V F ++ P+ T C G
Sbjct: 14 IAILDGPVDRTHPCFRGANLTPLFTYAAAACQDG-------------------------- 47
Query: 202 NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YGCT 260
HGTHVAS GQ +S G+A P R + + + GC+
Sbjct: 48 ------GASAHGTHVASLIFGQ--PCSSVEGIA--------PLCRGLNIPIFAEDRRGCS 91
Query: 261 GSNILAAFDDAIADGVDVLSLSLG--GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGN 318
++ A + A+ G ++++S G G P+ + +A+ ++ + +V +AGN
Sbjct: 92 QLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAM----CQQNNVLIVAAAGN 147
Query: 319 DGPSSGSVVNFAPWIFTVAA 338
+G + V P + V A
Sbjct: 148 EGCACLHVPAALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 55/242 (22%), Positives = 85/242 (35%), Gaps = 34/242 (14%)
Query: 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDV 199
+I I+DTGV ++ D+ D ++ FY I
Sbjct: 4 VVIAIVDTGV-----DYSHPDLDIYGNFSWK---LKFDYKAYLLPGMDKWGGFYVIMY-- 53
Query: 200 VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGG-SPGSRIAVYRVCSPEYG 258
D HGT AS AAG+ + YG I G +P ++IA +
Sbjct: 54 --------DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDV 105
Query: 259 CTGSNILAAFDDAIADG---------VDVLSLSLGGSAGIVR--PLTDDPIALGA-FHAV 306
A FD VDV+S S G S D +L
Sbjct: 106 IYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVT 165
Query: 307 EHGITVVCSAGNDGPSSGSVVN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 364
G+ +V +AGN GP G++ A +V A+T + D+ + G G+ +++
Sbjct: 166 YTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAAT-NFDYRPFYLFGYLPGGSGDVVSW 224
Query: 365 SN 366
S+
Sbjct: 225 SS 226
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APG I + N+ SGTSM+ P +SGV A I P +
Sbjct: 233 DVFAPGERIYSTTPDNEYETD------------SGTSMAAPVVSGVAALIWSYYPNLTAK 280
Query: 573 EIKSAVMTTAT 583
E+K ++ +
Sbjct: 281 EVKQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 470 NSKRNPV---ATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI--LAA 524
NS R+ A ++V A A +S G D+ APGV I
Sbjct: 139 NSGRSVSSGYAANPSVIAVAATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGT 190
Query: 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576
G+ G + SGTS + P +GV A I NP +P+E++
Sbjct: 191 GRGSAGDYPGGG-----YGSFSGTSFASPVAAGVAALILSANPNLTPAEVED 237
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
+ +S+RGPS KPD+ A G A D+G A +G E F++ GTSM+ P
Sbjct: 221 VVSWSSRGPSIA--GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEA--FDLFGGTSMATP 276
Query: 554 HISGVVA-AIKHQNPTFSPSE-----IKSAVMTTA 582
+G A I E +++ +M+TA
Sbjct: 277 MTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 45/149 (30%), Positives = 59/149 (39%), Gaps = 39/149 (26%)
Query: 212 HGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRV---CSPEYGCTGSNILAAF 268
HGTHVA T A G G+A G + G+RI RV C G T S+I+
Sbjct: 73 HGTHVAGTIAAVTNNG---VGVA-----GVAWGARILPVRVLGKC----GGTLSDIVDGM 120
Query: 269 DDA---IADGV-------DVLSLSLGGSAGIVRPLTDDPIALGAFHAV-EHGITVVCSAG 317
A GV V++LSLGG A + V G+ VV +AG
Sbjct: 121 RWAAGLPVPGVPVNPNPAKVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAG 174
Query: 318 NDGPSSGSVVNFAPW----IFTVAASTID 342
N+G S AP + V A+ +
Sbjct: 175 NEG---SSASVDAPANCRGVIAVGATDLR 200
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 212 HGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDA 271
HGT VAS AG Q GL G + G+ V+ G + + A D
Sbjct: 38 HGTAVASLLAGAGAQRP---GLLPGADLYGA-----DVFGRAGGGEGASALALARALDWL 89
Query: 272 IADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS 323
GV V+++SL G L +A A G+ +V +AGNDGP++
Sbjct: 90 AEQGVRVVNISLAGPPN---ALLAAAVA----AAAARGMVLVAAAGNDGPAA 134
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.2 bits (98), Expect = 9e-04
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 16/150 (10%)
Query: 189 GARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIA 248
D D + GHGTHVA T A + A PG+++
Sbjct: 164 AVAGGDFVDGDPEPPFLDDN--GHGTHVAGTIAAVIFDNGAGVAGVA-------PGAKLL 214
Query: 249 VYRVCSPEYGC-TGSNILAAFDDAIADG--VDVLSLSLGGSAGIV-RPLTDDPIALGAFH 304
+ +V G S++ + A G DV++LSLGGS P D +A
Sbjct: 215 LVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAA--- 271
Query: 305 AVEHGITVVCSAGNDGPSSGSVVNFAPWIF 334
A G+ +V +AGNDG ++ P +
Sbjct: 272 ANAGGVVIVAAAGNDGSNASGGDLAYPASY 301
|
Length = 508 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.002
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 373 YPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGG 432
PL+Y + C + LA + VKGKIVL S V+K + + G
Sbjct: 8 GPLVYVGNGDDAGG-------CCPEDLADSDVKGKIVLVRRGGC--SFVEKAENAQRAGA 58
Query: 433 VGVIVIDDQSRAVASSYG-----TFPLTVISSKEAAEI 465
GVI+ ++ + + + G T P+ IS ++ +
Sbjct: 59 AGVIIYNNDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 514 ITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSE 573
+A GV+I+A +SG S + PH++G+VA + + P ++
Sbjct: 165 FSADGVDIIAPAPHGRY------------LTVSGNSFAAPHVTGMVALLLSEKPDIDAND 212
Query: 574 IKSAVMTTAT 583
+K + A
Sbjct: 213 LKRLLQRLAV 222
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 47/209 (22%), Positives = 69/209 (33%), Gaps = 46/209 (22%)
Query: 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV 200
I+G+ DTG+ F D + N N +RKI+ YD D
Sbjct: 10 IVGVADTGLDTNHCFFYDPNF-----------NKTNLF-----HRKIVR---YDSLSD-- 48
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
+ D+ GHGTHVA A G + G +P +++ + +
Sbjct: 49 ----TKDDVDGHGTHVAGIIA-----GKGNDSSSISLYKGVAPKAKLYFQDIGDTSGNLS 99
Query: 261 G-SNILAAFDDAIADGVDVLSLSLGGSAGIVRPLT----DDPIALGAFHAVEH-GITVVC 314
++ F G + S S G L D A + I V
Sbjct: 100 SPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQ-------FAYNNPDILFVF 152
Query: 315 SAGNDGPSSGSVVNFAPW---IFTVAAST 340
SAGNDG + + + TV AS
Sbjct: 153 SAGNDGNDGSNTIGSPATAKNVLTVGASN 181
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 547 GTSMSCPHISGVVA----AIKHQNPTFSPSEIKSAVMTTAT 583
GTSMS P+ G +A +K + ++P ++ A+ TA
Sbjct: 370 GTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.89 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.69 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.15 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.09 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.79 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.59 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.5 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.4 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.35 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.35 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.32 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.3 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.29 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.28 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.25 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.21 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.17 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.16 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.07 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.06 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.04 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.01 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.96 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.87 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.37 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.36 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.09 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.38 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 94.98 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 94.69 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 94.65 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 94.28 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 92.47 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 92.27 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 91.37 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 91.07 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 85.48 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 84.37 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.51 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-51 Score=438.04 Aligned_cols=301 Identities=54% Similarity=0.851 Sum_probs=258.0
Q ss_pred eccccccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccC
Q 004113 104 LQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSC 183 (773)
Q Consensus 104 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~ 183 (773)
+++++++++++++++... ...+|..+++|+||+|||||||||++||+|.+....+++..|.+.|..+..+....|
T Consensus 1 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW-----GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSC 75 (307)
T ss_pred CCccccCCHHHcCCCCCC-----CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCc
Confidence 467889999999998644 222577899999999999999999999999998888899999999999988877889
Q ss_pred CceeEeeeeccccccc------cCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCC
Q 004113 184 NRKIIGARFYDIEDDV------VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257 (773)
Q Consensus 184 n~ki~~~~~~~~~~~~------~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g 257 (773)
++|+++.++|.+++.. ..+...+.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..+
T Consensus 76 ~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~ 155 (307)
T cd04852 76 NNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDG 155 (307)
T ss_pred CCeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCC
Confidence 9999999999876431 0234566789999999999999998777666666677889999999999999999866
Q ss_pred CCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEc
Q 004113 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVA 337 (773)
Q Consensus 258 ~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVg 337 (773)
.+..+++++||++|++++++|||||||... ...+.+.+..++.++.++|++||+||||+|+.....++..||+++||
T Consensus 156 ~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 156 GCFGSDILAAIDQAIADGVDVISYSIGGGS---PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 788999999999999999999999999876 24566788888889999999999999999987777888889999998
Q ss_pred ccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCC
Q 004113 338 ASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM 417 (773)
Q Consensus 338 a~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~ 417 (773)
+++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 731
Q ss_pred CchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccc
Q 004113 418 GSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYF 497 (773)
Q Consensus 418 ~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 497 (773)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 004113 498 SARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSA 577 (773)
Q Consensus 498 Ss~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~ 577 (773)
+||||+|||++|++++..... .........|..++|||||||+|||++|||+|++|+|+|++||++
T Consensus 236 ------------~~~di~apG~~i~~~~~~~~~--~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~ 301 (307)
T cd04852 236 ------------LKPDIAAPGVDILAAWTPEGA--DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSA 301 (307)
T ss_pred ------------CccceeeccCceeecccCccc--cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 477999999999999864211 012233378999999999999999999999999999999999999
Q ss_pred HHhccc
Q 004113 578 VMTTAT 583 (773)
Q Consensus 578 L~~TA~ 583 (773)
|++||+
T Consensus 302 L~~tA~ 307 (307)
T cd04852 302 LMTTAY 307 (307)
T ss_pred HHHhcC
Confidence 999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=442.07 Aligned_cols=293 Identities=18% Similarity=0.193 Sum_probs=211.9
Q ss_pred CCCC--CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 129 PSLN--SQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 129 ~~~~--~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
++|+ .+.+|+||+|||||||||++||||.+.-.... ....|.. +.+-+.....+.+ .+++|.++ ...+
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Grd--giDdD~nG~vdd~-~G~nfVd~------~~~P 374 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRK--GIDDDNNGNVDDE-YGANFVNN------DGGP 374 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCcc--ccccccCCccccc-ccccccCC------CCCC
Confidence 4555 35689999999999999999999985421000 0001100 0000000001111 22344432 2456
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGS 286 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (773)
.|..||||||||||||...+ +..+.||||+|+|+++|+++..+.+..+++++||+||++.|++|||||||..
T Consensus 375 ~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~ 446 (639)
T PTZ00262 375 MDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFD 446 (639)
T ss_pred CCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccC
Confidence 88999999999999997643 2336899999999999999987778999999999999999999999999975
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--------------cc----CCCcEEEEcccccCcceeeE
Q 004113 287 AGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV--------------VN----FAPWIFTVAASTIDRDFESD 348 (773)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~--------------~~----~~p~vitVga~~~~~~~~~~ 348 (773)
. ....+..++.+|.++|++||+||||+|...... +. ..|++|+|||+..+..
T Consensus 447 ~------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~---- 516 (639)
T PTZ00262 447 E------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN---- 516 (639)
T ss_pred C------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC----
Confidence 4 235677788999999999999999998643211 11 1255666665422100
Q ss_pred EEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccc
Q 004113 349 IVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVK 428 (773)
Q Consensus 349 ~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~ 428 (773)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCC
Q 004113 429 SLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRN 508 (773)
Q Consensus 429 ~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~ 508 (773)
....++.||++|..
T Consensus 517 -------------------------------------------------------------~~~s~s~~Snyg~~----- 530 (639)
T PTZ00262 517 -------------------------------------------------------------NQYSLSPNSFYSAK----- 530 (639)
T ss_pred -------------------------------------------------------------CcccccccccCCCC-----
Confidence 00123455666532
Q ss_pred CccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 004113 509 ILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNL 588 (773)
Q Consensus 509 ~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~ 588 (773)
++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.+++..
T Consensus 531 --~VDIaAPG~dI~St~p~------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~ 596 (639)
T PTZ00262 531 --YCQLAAPGTNIYSTFPK------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL 596 (639)
T ss_pred --cceEEeCCCCeeeccCC------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC
Confidence 35999999999999987 7899999999999999999999999999999999999999999887542
Q ss_pred CCccccCCCCCCCCCCCC-cccccccccCCCceee
Q 004113 589 RAPITTNSGAAATPYDFG-AGEVSTTASLQPGLVY 622 (773)
Q Consensus 589 g~~~~~~~~~~~~~~~~G-~G~id~~~A~~~~lv~ 622 (773)
. ..+| .|+||+++|++.++-+
T Consensus 597 ------------~-n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 ------------K-NKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ------------C-CccccCcEEcHHHHHHHHHhc
Confidence 2 2233 3899999999966644
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=404.99 Aligned_cols=244 Identities=27% Similarity=0.403 Sum_probs=199.4
Q ss_pred CCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCC
Q 004113 131 LNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMV 210 (773)
Q Consensus 131 ~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~ 210 (773)
|+.+++|+||+|||||||||.+||+|.+.. ...+|.+ .....|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~-------~~~~~d~~ 45 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN-------EKTLDDGL 45 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC-------CCCCCCCC
Confidence 889999999999999999999999997320 0011111 13355788
Q ss_pred CCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCC
Q 004113 211 GHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIV 290 (773)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~ 290 (773)
||||||||||+|+.. .+.||||+|+|+.+|++.+.+....++++++|+||+++++||||||||...
T Consensus 46 gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--- 111 (255)
T cd07479 46 GHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--- 111 (255)
T ss_pred CcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---
Confidence 999999999998741 248999999999999998875667788999999999999999999999754
Q ss_pred CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 291 RPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 291 ~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
+....+..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 112 --~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~--------------------------- 162 (255)
T cd07479 112 --FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF--------------------------- 162 (255)
T ss_pred --CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc---------------------------
Confidence 2335566667788899999999999999764443 344578888887432
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC----CCCCccCceEeCCccEEee
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL----TRNILKPDITAPGVNILAA 524 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~d~~iKPDI~APG~~I~sa 524 (773)
.+.++.|||+|++.. ..+++||||+|||.+|+++
T Consensus 163 ------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~ 200 (255)
T cd07479 163 ------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS 200 (255)
T ss_pred ------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeecc
Confidence 246789999996521 2578899999999999988
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP----TFSPSEIKSAVMTTATQTN 586 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~ls~~~Ik~~L~~TA~~~~ 586 (773)
... +.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 201 ~~~------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 201 KLK------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ccC------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 765 7799999999999999999999999998 7899999999999999874
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=407.81 Aligned_cols=271 Identities=23% Similarity=0.235 Sum_probs=204.4
Q ss_pred CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCc
Q 004113 134 QDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHG 213 (773)
Q Consensus 134 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHG 213 (773)
+++|+||+|||||||||..||++.+...+..+..+. +... .....|..+||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~-----------------------~~~~------~~~~~d~~gHG 51 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVN-----------------------VLGD------LDGGSGGGDEG 51 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCccee-----------------------eccc------cCCCCCCCchH
Confidence 579999999999999999998654322111111110 0000 13456788999
Q ss_pred hhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCC
Q 004113 214 THVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPL 293 (773)
Q Consensus 214 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 293 (773)
|||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++|||||||.... ..+
T Consensus 52 T~vAgii~------------------GvAP~a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~--~~~ 106 (275)
T cd05562 52 RAMLEIIH------------------DIAPGAELAFHTAG-----GGELDFAAAIRALAAAGADIIVDDIGYLNE--PFF 106 (275)
T ss_pred HHHHHHHh------------------ccCCCCEEEEEecC-----CCHHHHHHHHHHHHHcCCCEEEecccccCC--Ccc
Confidence 99999994 79999999998873 347899999999999999999999998652 222
Q ss_pred CCcHHHHHHHHHHhC-CcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCC
Q 004113 294 TDDPIALGAFHAVEH-GITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSP 371 (773)
Q Consensus 294 ~~~~~~~~~~~a~~~-Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 371 (773)
....+..++.++.++ |++||+||||+|.... ..+...|++|+|||++.+.......
T Consensus 107 ~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s---------------------- 164 (275)
T cd05562 107 QDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS---------------------- 164 (275)
T ss_pred cCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc----------------------
Confidence 345677788888887 9999999999997532 3355679999999976542110000
Q ss_pred ceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCcc
Q 004113 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGT 451 (773)
Q Consensus 372 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 451 (773)
|..
T Consensus 165 ----------------------~~~------------------------------------------------------- 167 (275)
T cd05562 165 ----------------------DPA------------------------------------------------------- 167 (275)
T ss_pred ----------------------ccc-------------------------------------------------------
Confidence 000
Q ss_pred ccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCc-cEEeeecCCCC
Q 004113 452 FPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGV-NILAAWMGNDT 530 (773)
Q Consensus 452 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~-~I~sa~~~~~~ 530 (773)
........+.||++||+. ++++||||+|||+ ++.+.+..
T Consensus 168 -----------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~--- 207 (275)
T cd05562 168 -----------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG--- 207 (275)
T ss_pred -----------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---
Confidence 000011345678899987 5889999999975 44555444
Q ss_pred CCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccc
Q 004113 531 GEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEV 610 (773)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~i 610 (773)
+.|..++|||||||||||++|||+|++|+|++++||++|++||+++...+ .+..||||+|
T Consensus 208 ---------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g-----------~d~~~G~G~v 267 (275)
T cd05562 208 ---------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG-----------YDNASGSGLV 267 (275)
T ss_pred ---------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC-----------CCCCcCcCcc
Confidence 78999999999999999999999999999999999999999999886443 6679999999
Q ss_pred cccccCC
Q 004113 611 STTASLQ 617 (773)
Q Consensus 611 d~~~A~~ 617 (773)
|+.+|++
T Consensus 268 da~~Av~ 274 (275)
T cd05562 268 DADRAVA 274 (275)
T ss_pred cHHHHhh
Confidence 9999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=430.14 Aligned_cols=410 Identities=21% Similarity=0.206 Sum_probs=242.8
Q ss_pred CCCCCcEEEEEccCCCCCCCCCCC-CCCCCCCCcccccccCCCCCCcccCCceeEeeeecccc-------ccccCCCCCC
Q 004113 135 DQESDTIIGILDTGVWPESESFND-KDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIE-------DDVVANGQSP 206 (773)
Q Consensus 135 ~~G~Gv~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~-------~~~~~~~~~~ 206 (773)
++|+||+|||||||||+.||+|++ ++.+++...|++....+..- ....+...+... .....+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 479999999999999999999985 35667788888766543211 111111111110 0000122445
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC----------CCHHHHHHHHHHHhhC--
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG----------CTGSNILAAFDDAIAD-- 274 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~----------~~~~~i~~ai~~a~~~-- 274 (773)
.|..||||||||||||+..+ +..+.||||+|+|+.+|++...+. +..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 78999999999999998743 234689999999999999988743 6788999999999863
Q ss_pred ---CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcccC-C------CcEEEEcccccCc
Q 004113 275 ---GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH-GITVVCSAGNDGPSSGSVVNF-A------PWIFTVAASTIDR 343 (773)
Q Consensus 275 ---g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~aAGN~g~~~~~~~~~-~------p~vitVga~~~~~ 343 (773)
.+.|||||||...+ .+...+.++.++..+..+ |++||+||||+|....+.... . .--+.|+.. +.
T Consensus 147 ~~~~p~VInlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~--~~ 222 (455)
T cd07478 147 ELNKPLVINISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG--EK 222 (455)
T ss_pred HhCCCeEEEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC--Cc
Confidence 57899999999765 567778888888887766 999999999999754433321 0 011222221 11
Q ss_pred ceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhh
Q 004113 344 DFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDK 423 (773)
Q Consensus 344 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k 423 (773)
.+...++...-..+.-.-+.+ .+...+.+.... ..... +....-..++.+..+.....+-.+.
T Consensus 223 ~~~~eiW~~~~d~~~v~i~sP----~Ge~~~~i~~~~-----------~~~~~--~~~~~~~t~i~v~y~~~~~~~g~~~ 285 (455)
T cd07478 223 GFNLEIWGDFPDRFSVSIISP----SGESSGRINPGI-----------GGSES--YKFVFEGTTVYVYYYLPEPYTGDQL 285 (455)
T ss_pred ceEEEEecCCCCEEEEEEECC----CCCccCccCcCC-----------Cccee--EEEEECCeEEEEEEcCCCCCCCCeE
Confidence 111111111111110000000 000000000000 00000 0000001112222111110000000
Q ss_pred h---cccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEe----eCeeeeccc-CCCccc
Q 004113 424 K---DGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATIL----PTVSVTKYK-PAPAIA 495 (773)
Q Consensus 424 ~---~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~----~~~~~~~~~-~~~~~a 495 (773)
. ......|-+-+-++.... .......|+|.-.....+..+ +......+.+.- ...++.... ..+.++
T Consensus 286 i~i~~~~~~~GiW~i~~~~~~~-~~g~~~~Wlp~~~~~~~~t~f----~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~ 360 (455)
T cd07478 286 IFIRFKNIKPGIWKIRLTGVSI-TDGRFDAWLPSRGLLSENTRF----LEPDPYTTLTIPGTARSVITVGAYNQNNNSIA 360 (455)
T ss_pred EEEEccCCCccceEEEEEeccC-CCceEEEEecCcCcCCCCCEe----ecCCCCceEecCCCCCCcEEEEEEeCCCCccc
Confidence 0 011222333333333221 122233455544443332222 222222222221 112333333 235699
Q ss_pred cccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC------CCC
Q 004113 496 YFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN------PTF 569 (773)
Q Consensus 496 ~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------p~l 569 (773)
.||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++ |.|
T Consensus 361 ~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~ 426 (455)
T cd07478 361 IFSGRGPTR--DGRIKPDIAAPGVNILTASPG------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYL 426 (455)
T ss_pred CccCCCcCC--CCCcCceEEecCCCEEEeecC------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCC
Confidence 999999998 699999999999999999987 889999999999999999999999975 567
Q ss_pred CHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 570 SPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 570 s~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
++++||++|++||+++... .+++++||||
T Consensus 427 ~~~~ik~~L~~tA~~~~~~----------~~pn~~~GyG 455 (455)
T cd07478 427 YGEKIKTYLIRGARRRPGD----------EYPNPEWGYG 455 (455)
T ss_pred CHHHHHHHHHHhCccCCCC----------CCCCCCCCCC
Confidence 9999999999999998632 3488999998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-48 Score=409.14 Aligned_cols=290 Identities=25% Similarity=0.193 Sum_probs=192.4
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhh
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHV 216 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThV 216 (773)
|+||+|||||||||++||+|.+.... .|. ..|+ +...+....++..+ ....+.|..||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~------~~~d---~~~~~~~g~d~~~~-----~~~~~~D~~gHGThv 62 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWK------LKFD---YKAYLLPGMDKWGG-----FYVIMYDFFSHGTSC 62 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccc------cccC---cCCCccCCcCCCCC-----ccCCCCCccccchhH
Confidence 89999999999999999999743210 000 0000 01112222222211 113467899999999
Q ss_pred HHhhccCCcCCCccccc-ccceeeeccCCceEEEEEeecCCCCCCHHHHHH-------HHHHH--hhCCCcEEEeccCCC
Q 004113 217 ASTAAGQAVQGASYYGL-AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA-------AFDDA--IADGVDVLSLSLGGS 286 (773)
Q Consensus 217 AGiiag~~~~~~~~~G~-~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~-------ai~~a--~~~g~dVIN~SlG~~ 286 (773)
||||||......+.+++ ....+.||||+|+|+.+|++...+......+.. +++|. .+++++|||||||..
T Consensus 63 AGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~ 142 (311)
T cd07497 63 ASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGIS 142 (311)
T ss_pred HHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcC
Confidence 99999986443332221 234579999999999999997542333222332 33443 468999999999985
Q ss_pred CCCCC--CCCCcHHHHHHHHH-HhCCcEEEEecCCCCCCCCCc--ccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 287 AGIVR--PLTDDPIALGAFHA-VEHGITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 287 ~~~~~--~~~~~~~~~~~~~a-~~~Gi~vV~aAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
..... ....+..+...+.+ .++|+++|+||||+|+...+. +..++++|+|||++.....+.
T Consensus 143 ~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~-------------- 208 (311)
T cd07497 143 NFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF-------------- 208 (311)
T ss_pred CCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch--------------
Confidence 42000 11122333333332 489999999999999865443 345789999999754211000
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
+...+
T Consensus 209 -----------~~~~~---------------------------------------------------------------- 213 (311)
T cd07497 209 -----------YLFGY---------------------------------------------------------------- 213 (311)
T ss_pred -----------hhhcc----------------------------------------------------------------
Confidence 00000
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccE
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 521 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I 521 (773)
.....+.++.||||||+. ++++||||+|||++|
T Consensus 214 ---------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i 246 (311)
T cd07497 214 ---------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFA 246 (311)
T ss_pred ---------------------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcce
Confidence 001135789999999988 699999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 004113 522 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP------TFSPSEIKSAVMTTA 582 (773)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~ls~~~Ik~~L~~TA 582 (773)
+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 247 ~s~~~~~~~~~--~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 247 WAPGRVLDSGG--ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred EeecccCCCCc--ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99876532100 111125799999999999999999999999876 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=416.27 Aligned_cols=313 Identities=29% Similarity=0.383 Sum_probs=237.0
Q ss_pred CCCCCC-CCCCcEEEEEccCCCCCCCCCCCCCCCCCCC-----cccccccCCCCCCcccCCceeEeeeeccccccccCCC
Q 004113 130 SLNSQD-QESDTIIGILDTGVWPESESFNDKDMGPIPT-----RWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANG 203 (773)
Q Consensus 130 ~~~~~~-~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~ 203 (773)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+. .-...+++.+++..++|.++.. +.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~ 75 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAG---IGYGKYYNEKVPFAYNYADNND---DI 75 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhccc---CCCCcccccCCCeeEcCCCCCC---cc
Confidence 788877 9999999999999999999998654332110 1111111 1112356788888888876642 11
Q ss_pred CCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecC--CCCCCHHHHHHHHHHHhhCCCcEEEe
Q 004113 204 QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSP--EYGCTGSNILAAFDDAIADGVDVLSL 281 (773)
Q Consensus 204 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~--~g~~~~~~i~~ai~~a~~~g~dVIN~ 281 (773)
....+..+|||||||||+|...+.. .+..+.||||+|+|+.+|++.. .+......++++++++++.+++||||
T Consensus 76 ~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 150 (346)
T cd07475 76 LDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINM 150 (346)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2245789999999999999874421 1345799999999999999974 44678888999999999999999999
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc----------------cCCCcEEEEcccccCcce
Q 004113 282 SLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVV----------------NFAPWIFTVAASTIDRDF 345 (773)
Q Consensus 282 SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~----------------~~~p~vitVga~~~~~~~ 345 (773)
|||.... .......+..++.++.++|++||+||||+|....... ...+++|+||++...
T Consensus 151 S~G~~~~--~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~--- 225 (346)
T cd07475 151 SLGSTAG--FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK--- 225 (346)
T ss_pred CCCcCCC--CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc---
Confidence 9998764 2255677788889999999999999999985432211 123455555543210
Q ss_pred eeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhc
Q 004113 346 ESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKD 425 (773)
Q Consensus 346 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~ 425 (773)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC
Q 004113 426 GVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL 505 (773)
Q Consensus 426 ~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 505 (773)
......+.++.||+|||+.
T Consensus 226 ------------------------------------------------------------~~~~~~~~~~~~S~~G~~~- 244 (346)
T cd07475 226 ------------------------------------------------------------VPNPNGGQMSGFSSWGPTP- 244 (346)
T ss_pred ------------------------------------------------------------cCCCCCCccCCCcCCCCCc-
Confidence 0001235788999999998
Q ss_pred CCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh----CCCCCHHH----HHHH
Q 004113 506 TRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ----NPTFSPSE----IKSA 577 (773)
Q Consensus 506 ~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~ls~~~----Ik~~ 577 (773)
+.++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++
T Consensus 245 -~~~~~pdi~apG~~i~s~~~~------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~ 311 (346)
T cd07475 245 -DLDLKPDITAPGGNIYSTVND------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNL 311 (346)
T ss_pred -ccCcCCeEEeCCCCeEEecCC------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 589999999999999999876 78999999999999999999999997 78898876 7889
Q ss_pred HHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCC
Q 004113 578 VMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 578 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
|++||.+.... ...+..+.+.++|+|+||+.+|++
T Consensus 312 l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 312 LMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 99999953211 233455678899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=404.64 Aligned_cols=292 Identities=29% Similarity=0.367 Sum_probs=228.4
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccc----cCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDV----VANGQ 204 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~----~~~~~ 204 (773)
.+|+.+++|+||+|||||+|||++||+|.+.... ..++.+.+++..+... ..+..
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDGTNPPVPDD 62 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccccccCCCCCC
Confidence 6899999999999999999999999999853211 0122222222211100 01224
Q ss_pred CCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccC
Q 004113 205 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLG 284 (773)
Q Consensus 205 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG 284 (773)
.+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+......++++++++++++++|||||||
T Consensus 63 ~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g 133 (312)
T cd07489 63 DPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLG 133 (312)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCC
Confidence 5667799999999999998633 3468999999999999998776678888999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 285 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 134 ~~~----~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------- 188 (312)
T cd07489 134 GPS----GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------- 188 (312)
T ss_pred cCC----CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------
Confidence 865 233467777788889999999999999986432 2234457777777621
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccE
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 521 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I 521 (773)
+.||++||+. +...||||+|||+++
T Consensus 189 -----------------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i 213 (312)
T cd07489 189 -----------------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNI 213 (312)
T ss_pred -----------------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCE
Confidence 4678999987 588999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhcccccCCCCCccccCCCCCC
Q 004113 522 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN-PTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAA 600 (773)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~ 600 (773)
+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++........ ....+
T Consensus 214 ~~~~~~~~----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~--~~~~~ 281 (312)
T cd07489 214 LSTYPLAG----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA--LPDLA 281 (312)
T ss_pred EEeeeCCC----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc--ccCCC
Confidence 99988722 459999999999999999999999999 999999999999999998865431111 01145
Q ss_pred CCCCCCcccccccccCCCceee
Q 004113 601 TPYDFGAGEVSTTASLQPGLVY 622 (773)
Q Consensus 601 ~~~~~G~G~id~~~A~~~~lv~ 622 (773)
++.++|+|+||+.+|++..-..
T Consensus 282 ~~~~~G~G~vn~~~a~~~~~~~ 303 (312)
T cd07489 282 PVAQQGAGLVNAYKALYATTTL 303 (312)
T ss_pred CHhhcCcceeeHHHHhcCCccc
Confidence 7789999999999999965433
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=389.52 Aligned_cols=249 Identities=25% Similarity=0.298 Sum_probs=205.5
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCC
Q 004113 130 SLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDM 209 (773)
Q Consensus 130 ~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~ 209 (773)
+|+.+++|+||+|||||+|||++||+|.+....+... +.. ......|.
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~--------------------------~~~------~~~~~~~~ 49 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT--------------------------YAA------AACQDGGA 49 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC--------------------------ccc------cCCCCCCC
Confidence 7999999999999999999999999998642211100 000 01345577
Q ss_pred CCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC-CCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 210 VGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG-CTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
.+|||||||||+|+.. ..+.||||+|+|+.+|++...+. +...++++||+||+++|++|||||||....
T Consensus 50 ~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~ 119 (267)
T cd07476 50 SAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQ 119 (267)
T ss_pred CCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCC
Confidence 8999999999998742 23589999999999999977633 346789999999999999999999997542
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
.......+..++.++.++|++||+||||+|......+...|++|+||+++.+
T Consensus 120 --~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 171 (267)
T cd07476 120 --TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------------------- 171 (267)
T ss_pred --CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------------------
Confidence 2344567888889999999999999999998776777778999999985321
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 172 -------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~- 202 (267)
T cd07476 172 -------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG- 202 (267)
T ss_pred -------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-
Confidence 2567899999754 388999999999999887
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHhcccccCCC
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPT----FSPSEIKSAVMTTATQTNNL 588 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~----ls~~~Ik~~L~~TA~~~~~~ 588 (773)
+.|..++|||||||||||++|||+|++|. +++++||++|++||+++...
T Consensus 203 -----------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 203 -----------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred -----------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 78999999999999999999999999887 89999999999999998754
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=386.59 Aligned_cols=283 Identities=35% Similarity=0.514 Sum_probs=218.6
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeecccccccc---------CCCCCCC
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV---------ANGQSPR 207 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~---------~~~~~~~ 207 (773)
|+||+|||||+|||++||+|.+.. ..+.++...++|....... .......
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998532 1223444444444332100 0011245
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCC
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSA 287 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (773)
|..+|||||||+|+|...+ ...+.|+||+|+|+.+|++...+.+...+++++|+++++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 6889999999999998644 33468999999999999998665788899999999999999999999999765
Q ss_pred CCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccC
Q 004113 288 GIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFS 365 (773)
Q Consensus 288 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~ 365 (773)
. ...+.+..+++++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 132 ~----~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------------- 186 (295)
T cd07474 132 N----GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------------- 186 (295)
T ss_pred C----CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------------
Confidence 2 2456777888999999999999999998765544 445689999998641100
Q ss_pred CCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc
Q 004113 366 NLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV 445 (773)
Q Consensus 366 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~ 445 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCC-CCCCCCCCccCceEeCCccEEee
Q 004113 446 ASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARG-PSPLTRNILKPDITAPGVNILAA 524 (773)
Q Consensus 446 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G-p~~~~d~~iKPDI~APG~~I~sa 524 (773)
........|+++| ++. +..+||||+|||++|.++
T Consensus 187 -------------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~ 221 (295)
T cd07474 187 -------------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMST 221 (295)
T ss_pred -------------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEee
Confidence 0012334455554 444 588999999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYD 604 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 604 (773)
+.... +.|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..
T Consensus 222 ~~~~~----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~ 284 (295)
T cd07474 222 APGSG----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSR 284 (295)
T ss_pred ccCCC----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhc
Confidence 87632 678999999999999999999999999999999999999999999876531 1124579
Q ss_pred CCccccccccc
Q 004113 605 FGAGEVSTTAS 615 (773)
Q Consensus 605 ~G~G~id~~~A 615 (773)
+|+|+||+.+|
T Consensus 285 ~G~G~l~~~~A 295 (295)
T cd07474 285 QGAGRVDALRA 295 (295)
T ss_pred cCcceeccccC
Confidence 99999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=387.82 Aligned_cols=261 Identities=27% Similarity=0.349 Sum_probs=189.8
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCCCCccccccc-----------------CCCCCCcccCCceeEeeeeccccc-cc
Q 004113 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCN-----------------AGNDNVSFSCNRKIIGARFYDIED-DV 199 (773)
Q Consensus 138 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~-----------------~g~~f~~~~~n~ki~~~~~~~~~~-~~ 199 (773)
|+|+|||||||||++||+|.+. .|....+ .|.+|......+++++...+.... .+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 2221111 122332222222222222111110 01
Q ss_pred c-CCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcE
Q 004113 200 V-ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDV 278 (773)
Q Consensus 200 ~-~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dV 278 (773)
+ .+...+.+..+|||||||||+|...++ ..+.||||+|+|+.+|++... .....++++||+||+++|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~g-~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPNG-DERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecCC-CcCHHHHHHHHHHHHHCCCcE
Confidence 1 122344568999999999999986442 235899999999999998643 567788999999999999999
Q ss_pred EEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---c--------cCCCcEEEEcccccCcceee
Q 004113 279 LSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV---V--------NFAPWIFTVAASTIDRDFES 347 (773)
Q Consensus 279 IN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~---~--------~~~p~vitVga~~~~~~~~~ 347 (773)
||||||... ......+..++.++.++|+++|+||||+|...... + ...+++|+||++....
T Consensus 145 iN~S~G~~~----~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~---- 216 (291)
T cd07483 145 INMSFGKSF----SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY---- 216 (291)
T ss_pred EEeCCCCCC----CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC----
Confidence 999999754 12235567778889999999999999998543211 1 1124556666532210
Q ss_pred EEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhccc
Q 004113 348 DIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV 427 (773)
Q Consensus 348 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~ 427 (773)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCC
Q 004113 428 KSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTR 507 (773)
Q Consensus 428 ~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d 507 (773)
....++.||++|+.
T Consensus 217 --------------------------------------------------------------~~~~~~~~Sn~G~~---- 230 (291)
T cd07483 217 --------------------------------------------------------------ENNLVANFSNYGKK---- 230 (291)
T ss_pred --------------------------------------------------------------CcccccccCCCCCC----
Confidence 01257889999974
Q ss_pred CCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 508 NILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 508 ~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
+|||.|||++|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ---~vdi~APG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ---NVDVFAPGERIYSTTPD------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---ceEEEeCCCCeEeccCc------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 45999999999999876 78999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-45 Score=375.04 Aligned_cols=235 Identities=26% Similarity=0.389 Sum_probs=193.4
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 140 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
|+|||||||||++||+|.+... ..+++.. ....|..+||||||||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~---------------------------~~~~~~~--------~~~~~~~~HGT~vAgi 45 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI---------------------------ARLFFAG--------PGAPAPSAHGTAVASL 45 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc---------------------------ccccCCC--------CCCCCCCCCHHHHHHH
Confidence 6899999999999999974311 1111110 2355688999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCC---CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCc
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE---YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDD 296 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~---g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~ 296 (773)
|+|...+ . .||||+|+|+.+|++... ..+...++++||+||++.|++|||||||... ..
T Consensus 46 ia~~~~~---------~--~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-------~~ 107 (239)
T cd05561 46 LAGAGAQ---------R--PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-------NA 107 (239)
T ss_pred HhCCCCC---------C--cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-------CH
Confidence 9998522 1 799999999999999865 2367788999999999999999999999643 24
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceee
Q 004113 297 PIALGAFHAVEHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPL 375 (773)
Q Consensus 297 ~~~~~~~~a~~~Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 375 (773)
.++.++.++.++|++||+||||+|... ..++...+++|+|++++.
T Consensus 108 ~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~---------------------------------- 153 (239)
T cd05561 108 LLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA---------------------------------- 153 (239)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC----------------------------------
Confidence 677778899999999999999999653 344556688888887432
Q ss_pred EEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEE
Q 004113 376 IYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLT 455 (773)
Q Consensus 376 v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 455 (773)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCC
Q 004113 456 VISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPE 535 (773)
Q Consensus 456 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~ 535 (773)
.+.++.||++|+.. ||.|||++|+++.+.
T Consensus 154 -----------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------- 182 (239)
T cd05561 154 -----------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------- 182 (239)
T ss_pred -----------------------------------CCCccccCCCCCcc--------eEEccccceecccCC--------
Confidence 13567899999865 999999999998776
Q ss_pred CCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 536 GKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
+.|..++|||||||||||++|||+|++| +++++||++|++||+++...+ .+..||||
T Consensus 183 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~-----------~d~~~G~G 239 (239)
T cd05561 183 ----GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPG-----------RDPVFGYG 239 (239)
T ss_pred ----CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCC-----------cCCCcCCC
Confidence 7899999999999999999999999999 999999999999999887654 67789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=373.49 Aligned_cols=246 Identities=29% Similarity=0.340 Sum_probs=197.3
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCC-CCCCCCCchhhH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQS-PRDMVGHGTHVA 217 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~-~~d~~gHGThVA 217 (773)
||+||||||||+++||+|..... ..+.++.+.++|.++. .. ..|..+||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~------~~~~~~~~~HGT~va 54 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNS------NNTNYTDDDHGTAVL 54 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------------ccCCceeeeecCccCC------CCCCCCCCCchhhhh
Confidence 79999999999999999952210 1234667777776553 22 367889999999
Q ss_pred HhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC--CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC----
Q 004113 218 STAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE--YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR---- 291 (773)
Q Consensus 218 Giiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~--g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~---- 291 (773)
|||+|+. .+.+.||||+|+|+.+|+.... ......+++.+++++.+.+++|||||||.......
T Consensus 55 giia~~~----------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~ 124 (261)
T cd07493 55 STMAGYT----------PGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSY 124 (261)
T ss_pred eeeeeCC----------CCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc
Confidence 9999974 2336899999999999987543 12345678999999999999999999998652101
Q ss_pred -----CCCCcHHHHHHHHHHhCCcEEEEecCCCCCC---CCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeec
Q 004113 292 -----PLTDDPIALGAFHAVEHGITVVCSAGNDGPS---SGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESIN 363 (773)
Q Consensus 292 -----~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 363 (773)
......+..+++++.++|+++|+||||+|.. ....+...+++|+|||.+.
T Consensus 125 ~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------------- 182 (261)
T cd07493 125 TYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------------- 182 (261)
T ss_pred ccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------------
Confidence 0112456778888999999999999999976 2344556789999998432
Q ss_pred cCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc
Q 004113 364 FSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 443 (773)
Q Consensus 364 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 443 (773)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEe
Q 004113 444 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA 523 (773)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~s 523 (773)
.+.++.||++||+. ++++||||+|||.+|++
T Consensus 183 -----------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~ 213 (261)
T cd07493 183 -----------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYV 213 (261)
T ss_pred -----------------------------------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeEE
Confidence 13678899999987 68999999999999998
Q ss_pred eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 524 AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 524 a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
.... +.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 214 ~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 214 INGD------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EcCC------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 6655 78999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=371.30 Aligned_cols=247 Identities=31% Similarity=0.405 Sum_probs=195.0
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhh
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHV 216 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThV 216 (773)
|+||+|||||+||+++||+|.+. |.+..... + ...+.+.+.. .....+.|..+|||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~--~---------~~~~~~~d~~---~~~~~~~d~~~HGT~v 58 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGS--A---------DHDYNWFDPV---GNTPLPYDDNGHGTHT 58 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCC--c---------ccccccccCC---CCCCCCCCCCCchhhh
Confidence 89999999999999999999863 11110000 0 0000000000 1124566788999999
Q ss_pred HHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh------------CCCcEEEeccC
Q 004113 217 ASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA------------DGVDVLSLSLG 284 (773)
Q Consensus 217 AGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~------------~g~dVIN~SlG 284 (773)
||||+|...+ +...||||+|+|+.+|++... .+...+++++++++++ .+++|||||||
T Consensus 59 agii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G 128 (264)
T cd07481 59 MGTMVGNDGD---------GQQIGVAPGARWIACRALDRN-GGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWG 128 (264)
T ss_pred hhheeecCCC---------CCceEECCCCeEEEEEeecCC-CCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCC
Confidence 9999987532 223899999999999999887 4788899999999975 78999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 285 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS---VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
... . ....+..++..+.++|++||+||||++..... .+...|++|+||+++.
T Consensus 129 ~~~---~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~-------------------- 183 (264)
T cd07481 129 GPS---G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR-------------------- 183 (264)
T ss_pred cCC---C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC--------------------
Confidence 765 2 34556667788889999999999999865433 3445688888887532
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccE
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 521 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I 521 (773)
.+.++.||++||.. .+++||||+|||.+|
T Consensus 184 -------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i 212 (264)
T cd07481 184 -------------------------------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNI 212 (264)
T ss_pred -------------------------------------------------CCCCccccCCCCCC--CCCcCceEEECCCCe
Confidence 23678999999987 489999999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 004113 522 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPT--FSPSEIKSAVMTTAT 583 (773)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--ls~~~Ik~~L~~TA~ 583 (773)
.++.+. +.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 213 ~s~~~~------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 213 RSAVPG------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEecCC------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999987 78999999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=379.38 Aligned_cols=221 Identities=28% Similarity=0.382 Sum_probs=167.4
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC--CCHHHHHHHHHHHhhCCCcEEEeccC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG--CTGSNILAAFDDAIADGVDVLSLSLG 284 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~--~~~~~i~~ai~~a~~~g~dVIN~SlG 284 (773)
.|+.+|||||||||||+..+ +..+.||||+|+|+.+|+++...+ +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47889999999999998533 234689999999999999875422 23457999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHH-HHhCCcEEEEecCCCCCCCCCccc---CCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 285 GSAGIVRPLTDDPIALGAFH-AVEHGITVVCSAGNDGPSSGSVVN---FAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~-a~~~Gi~vV~aAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
.... .. ....+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||..........
T Consensus 254 ~~~~--~~-~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 254 EATH--WP-NSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred cCCC--Cc-cchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 8752 11 11233334443 457899999999999987766543 35899999996432100000
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
|.+
T Consensus 319 ------------y~~----------------------------------------------------------------- 321 (412)
T cd04857 319 ------------YSL----------------------------------------------------------------- 321 (412)
T ss_pred ------------ccc-----------------------------------------------------------------
Confidence 000
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCcc
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN 520 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~ 520 (773)
.....+.++.||||||+. |+++||||+|||+.
T Consensus 322 ----------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~ 353 (412)
T cd04857 322 ----------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGA 353 (412)
T ss_pred ----------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCc
Confidence 001135789999999998 79999999999999
Q ss_pred EEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 004113 521 ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQT 585 (773)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~Ik~~L~~TA~~~ 585 (773)
|.+.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 354 I~s~p~~~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 354 IASVPNWT----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred EEEcccCC----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 98752211 16789999999999999999999985 478999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=370.81 Aligned_cols=264 Identities=27% Similarity=0.308 Sum_probs=202.4
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
++|..+++|+||+|||||||||++||+|.+..... .+. .....+.+.... +.......|
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~~------~~~~~~~~~~~~--~~~~~~~~~ 59 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GYD------PAVNGYNFVPNV--GDIDNDVSV 59 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Ccc------cccCCccccccc--CCcCCCCCC
Confidence 38999999999999999999999999998651100 000 000000000000 001234567
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|+..+.....|.+ .+.|+||+|+|+.+|++...+.....+++++|+++++.|++|||||||...
T Consensus 60 ~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~- 136 (273)
T cd07485 60 GGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG- 136 (273)
T ss_pred CCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-
Confidence 88999999999999864432222221 346799999999999999876678889999999999999999999999865
Q ss_pred CCCCCCCcHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 289 IVRPLTDDPIALGAFHAVEH-------GITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~-------Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
...+...+..++..+.++ |+++|+||||++......+...+++|+|++++.
T Consensus 137 --~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~-------------------- 194 (273)
T cd07485 137 --GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT-------------------- 194 (273)
T ss_pred --ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC--------------------
Confidence 234556677777888887 999999999999876666667789999998532
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCc-c
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGV-N 520 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~-~ 520 (773)
.+.++.||++|+.. ||+|||+ .
T Consensus 195 -------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~ 217 (273)
T cd07485 195 -------------------------------------------------NDNKASFSNYGRWV--------DIAAPGVGT 217 (273)
T ss_pred -------------------------------------------------CCCcCccccCCCce--------EEEeCCCCc
Confidence 13667899999876 9999999 8
Q ss_pred EEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 004113 521 ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPT-FSPSEIKSAVMTT 581 (773)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-ls~~~Ik~~L~~T 581 (773)
|+++.+.... ...+.|..++|||||||+|||++|||+|++|+ ++++|||++|++|
T Consensus 218 i~~~~~~~~~------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 218 ILSTVPKLDG------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccccC------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9888765311 11267999999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=368.36 Aligned_cols=258 Identities=31% Similarity=0.477 Sum_probs=205.8
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhh
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHV 216 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThV 216 (773)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|..+|||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~---~~~~~~~d~~~HGT~v 50 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV---NGRTTPYDDNGHGTHV 50 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc---cCCCCCCCCCCchHHH
Confidence 89999999999999999999864210 0 0000000 0124566788999999
Q ss_pred HHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC----CCcEEEeccCCCCCCCCC
Q 004113 217 ASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD----GVDVLSLSLGGSAGIVRP 292 (773)
Q Consensus 217 AGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~ 292 (773)
||||+|...+. ...+.||||+|+|+.+|+++..+.....++++||+|+++. +++|||||||.... ..
T Consensus 51 Agiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~--~~ 121 (264)
T cd07487 51 AGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPD--PS 121 (264)
T ss_pred HHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCC--CC
Confidence 99999986431 3446999999999999999988677889999999999998 99999999998763 35
Q ss_pred CCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCC
Q 004113 293 LTDDPIALGAFHAVEHGITVVCSAGNDGPSSG--SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKS 370 (773)
Q Consensus 293 ~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 370 (773)
...+.+..++.++.++|++||+||||++.... ..+...+++|+||+++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------------- 175 (264)
T cd07487 122 YGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP-------------------------- 175 (264)
T ss_pred CCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------------------------
Confidence 56678888889999999999999999997765 44456789999998654310
Q ss_pred CceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCc
Q 004113 371 PVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYG 450 (773)
Q Consensus 371 ~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 450 (773)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCC
Q 004113 451 TFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDT 530 (773)
Q Consensus 451 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~ 530 (773)
....++.||++||+. ++++||||+|||++|+++.+....
T Consensus 176 ---------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~ 214 (264)
T cd07487 176 ---------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN 214 (264)
T ss_pred ---------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccc
Confidence 002578899999988 699999999999999998653210
Q ss_pred CCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 531 GEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
. .....+.|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 215 ~---~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 215 P---GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred c---CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 0 1122378899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=362.91 Aligned_cols=233 Identities=33% Similarity=0.462 Sum_probs=195.6
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCC
Q 004113 130 SLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDM 209 (773)
Q Consensus 130 ~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~ 209 (773)
.|..+++|+||+|||||+||+++||+|.++ +...+++... ....|.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~-------~~~~d~ 62 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG-------DPDSDC 62 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------CCCCCC
Confidence 777889999999999999999999999743 1222222221 225678
Q ss_pred CCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC-----CCcEEEeccC
Q 004113 210 VGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD-----GVDVLSLSLG 284 (773)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~-----g~dVIN~SlG 284 (773)
.+|||||||||+++. .||||+|+|+.+|+++..+....++++++++++++. +++|||||||
T Consensus 63 ~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g 128 (255)
T cd04077 63 NGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLG 128 (255)
T ss_pred CccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCC
Confidence 899999999999863 699999999999999987677889999999999986 5899999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeec
Q 004113 285 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESIN 363 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 363 (773)
... ...+..++.++.++|+++|+||||+|... ...+...|++|+||+++.+
T Consensus 129 ~~~-------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------------- 180 (255)
T cd04077 129 GGA-------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------------- 180 (255)
T ss_pred CCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------------
Confidence 754 35666777889999999999999999765 3445567899999985431
Q ss_pred cCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc
Q 004113 364 FSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 443 (773)
Q Consensus 364 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 443 (773)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEe
Q 004113 444 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA 523 (773)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~s 523 (773)
+.++.||++||.. ||+|||.+|.+
T Consensus 181 ------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~ 204 (255)
T cd04077 181 ------------------------------------------------DARASFSNYGSCV--------DIFAPGVDILS 204 (255)
T ss_pred ------------------------------------------------CCccCcccCCCCC--------cEEeCCCCeEe
Confidence 2578899999976 99999999999
Q ss_pred eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004113 524 AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584 (773)
Q Consensus 524 a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~ 584 (773)
+..... +.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 205 ~~~~~~----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 205 AWIGSD----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cccCCC----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 887421 789999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=365.51 Aligned_cols=333 Identities=26% Similarity=0.381 Sum_probs=259.5
Q ss_pred CCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccC-----c----------------cEEEEec---ceeeEEEEEcC
Q 004113 27 GSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKK-----N----------------SIIRSYK---HGFSGFAARLS 82 (773)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~~~y~---~~~ng~s~~l~ 82 (773)
+..+.+|||.|+... . +...+.|.++++..+.... + .+...|. ..|+|+.-..+
T Consensus 77 ~~~~~~YiV~f~~~~-~-q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDA-S-QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccccceEEEeCCCc-c-HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 346789999999666 4 4556667777776654321 1 1333332 26778888889
Q ss_pred HHHHHHHhCCCCeEEEecCceecccc-----ccCccccCcccccccCCCCCCCCC----CCCCCCCcEEEEEccCCCCCC
Q 004113 83 AEEAHALSKKPGVVSIFPDPVLQLHT-----TRSWDFLKIQTDVLIDSVPSPSLN----SQDQESDTIIGILDTGVWPES 153 (773)
Q Consensus 83 ~~~i~~L~~~p~V~~V~~~~~~~~~~-----~~~~~~~gl~~~~~~~~~~~~~~~----~~~~G~Gv~VaVIDtGid~~H 153 (773)
.+-+..++++|-++.++++..++... .+....|+|-+..++....-..|- ....|+||...|+||||+..|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 99999999999999999988776543 344445666665543321111221 234799999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCccccc
Q 004113 154 ESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGL 233 (773)
Q Consensus 154 p~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~ 233 (773)
|+|.++ +.| |.|.. ......|++||||||||+|++..
T Consensus 235 ~dFegR------a~w-Ga~i~---------------------------~~~~~~D~nGHGTH~AG~I~sKt--------- 271 (501)
T KOG1153|consen 235 PDFEGR------AIW-GATIP---------------------------PKDGDEDCNGHGTHVAGLIGSKT--------- 271 (501)
T ss_pred cccccc------eec-ccccC---------------------------CCCcccccCCCcceeeeeeeccc---------
Confidence 999865 233 22211 01345689999999999999885
Q ss_pred ccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC---------CCcEEEeccCCCCCCCCCCCCcHHHHHHHH
Q 004113 234 AAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD---------GVDVLSLSLGGSAGIVRPLTDDPIALGAFH 304 (773)
Q Consensus 234 ~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~ 304 (773)
.|||.+++|+++||+.++|.+..+++++++|++++. +..|.|||+|+... -++..|++.
T Consensus 272 -----~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S-------~aLn~AV~~ 339 (501)
T KOG1153|consen 272 -----FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS-------AALNMAVNA 339 (501)
T ss_pred -----cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc-------HHHHHHHHH
Confidence 799999999999999999999999999999999975 57899999998762 567888899
Q ss_pred HHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCc
Q 004113 305 AVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKK 383 (773)
Q Consensus 305 a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~ 383 (773)
|.+.||++++||||+..+.+ +.+..+..+|+|||++..
T Consensus 340 A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~----------------------------------------- 378 (501)
T KOG1153|consen 340 ASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN----------------------------------------- 378 (501)
T ss_pred HhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------------------------------------
Confidence 99999999999999987654 445577899999997542
Q ss_pred CccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHH
Q 004113 384 DDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAA 463 (773)
Q Consensus 384 ~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~ 463 (773)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcce
Q 004113 464 EILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFN 543 (773)
Q Consensus 464 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~ 543 (773)
+.+|.||+||++. ||.|||++|+|+|.+.. ....
T Consensus 379 ----------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~----------~at~ 412 (501)
T KOG1153|consen 379 ----------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN----------NATA 412 (501)
T ss_pred ----------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCc----------cchh
Confidence 4899999999999 99999999999998743 5678
Q ss_pred eeccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 004113 544 VISGTSMSCPHISGVVAAIKHQNPT---------FSPSEIKSAVMTTAT 583 (773)
Q Consensus 544 ~~sGTSmAaP~VAG~aALl~~~~p~---------ls~~~Ik~~L~~TA~ 583 (773)
..||||||+|||||++|..+..+|. .++.++|..+..-..
T Consensus 413 ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 413 ILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred eeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999999999999999999999873 378888887776554
|
|
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=368.78 Aligned_cols=264 Identities=25% Similarity=0.254 Sum_probs=187.1
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhh
Q 004113 141 IIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTA 220 (773)
Q Consensus 141 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGii 220 (773)
+|||||||||.+||+|...- .....+... .....|..||||||||||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~------~~~~~d~~gHGT~vAgii 48 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE------PGWTADDLGHGTAVAGLA 48 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC------CCCcCCCCCChHHHHHHH
Confidence 79999999999999997431 111111110 012568999999999999
Q ss_pred ccCCcCCCcccccccceeeeccCCceEEEEEeecCCC----CCCHHHHHHHHHHHhhCC---CcEEEeccCCCCCCCCCC
Q 004113 221 AGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY----GCTGSNILAAFDDAIADG---VDVLSLSLGGSAGIVRPL 293 (773)
Q Consensus 221 ag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g----~~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~~~~~~~ 293 (773)
++...+ .....|+||+|+|+.+|++...+ .....++++||+|+++.+ ++|||||||....... .
T Consensus 49 a~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~-~ 119 (291)
T cd04847 49 LYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDD-G 119 (291)
T ss_pred HcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccC-C
Confidence 976432 12357999999999999999863 356678999999999853 5999999998753111 1
Q ss_pred CCcHHHHHHHH-HHhCCcEEEEecCCCCCCCCCc------------ccCCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 294 TDDPIALGAFH-AVEHGITVVCSAGNDGPSSGSV------------VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 294 ~~~~~~~~~~~-a~~~Gi~vV~aAGN~g~~~~~~------------~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
....+..++++ +.++|++||+||||++...... +..++++|+|||++.+.........
T Consensus 120 ~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~--------- 190 (291)
T cd04847 120 RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY--------- 190 (291)
T ss_pred CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc---------
Confidence 11234444443 5689999999999999765432 3346799999997654311000000
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCcc
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN 520 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~ 520 (773)
+.......+.||+|||.. ++.+||||+|||++
T Consensus 191 ----------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~ 222 (291)
T cd04847 191 ----------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGN 222 (291)
T ss_pred ----------------------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCc
Confidence 000011234499999998 69999999999999
Q ss_pred EEeeecCCCCC------CCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 521 ILAAWMGNDTG------EAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 521 I~sa~~~~~~~------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
|.+........ ..........|..++|||||||+|||++|||++++|++++++||++|++||+
T Consensus 223 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 223 LAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 98865421100 0001122378999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=358.56 Aligned_cols=240 Identities=31% Similarity=0.384 Sum_probs=202.8
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+ +|+||+|||||+||+++||+|... ++...+++.+.. ..+.|
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~~------~~~~d 66 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDND------SDAMD 66 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCCC------CCCCC
Confidence 688888 999999999999999999998432 222223333221 34667
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||++...+ ...+.|+||+|+|+.+|++...+.+...+++++|+++++.+++|||||||...
T Consensus 67 ~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~- 137 (260)
T cd07484 67 DNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL- 137 (260)
T ss_pred CCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC-
Confidence 889999999999987533 23358999999999999998876788889999999999999999999999764
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 138 -----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 186 (260)
T cd07484 138 -----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------------- 186 (260)
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------------
Confidence 3356777778889999999999999998877888888999999985321
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
+.++.||++|+.. |++|||.+|.+..+.
T Consensus 187 -------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~- 214 (260)
T cd07484 187 -------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD- 214 (260)
T ss_pred -------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-
Confidence 3567889999865 999999999998876
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQT 585 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~ 585 (773)
+.|..++|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 215 -----------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 -----------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred -----------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 7899999999999999999999999999 99999999999999876
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=354.03 Aligned_cols=253 Identities=30% Similarity=0.406 Sum_probs=188.2
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
||+|||||+|||++||+|.+... ...+|..+.. .......|..+|||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~---------------------------~~~~~~~~~~--~~~~~~~d~~~HGT~vAg 51 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA---------------------------QWADFDENRR--ISATEVFDAGGHGTHVSG 51 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC---------------------------CceeccCCCC--CCCCCCCCCCCcHHHHHH
Confidence 79999999999999999975311 1111111000 012345678899999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
||+|+.. +....||||+|+|+.+|++... ++...+++++|+|+++.+++|||||||.... . .+.+
T Consensus 52 iia~~~~---------~~~~~GvAp~a~i~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~---~--~~~~ 116 (254)
T cd07490 52 TIGGGGA---------KGVYIGVAPEADLLHGKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSLGGTYY---S--EDPL 116 (254)
T ss_pred HHhcCCC---------CCCEEEECCCCEEEEEEEecCC-CCcHHHHHHHHHHHHhCCCCEEEECCCcCCC---C--CcHH
Confidence 9999863 2335799999999999999887 4788999999999999999999999998762 2 4556
Q ss_pred HHHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEE
Q 004113 299 ALGAFHAVE-HGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIY 377 (773)
Q Consensus 299 ~~~~~~a~~-~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~ 377 (773)
..+++...+ +|++||+||||+|......+...+++|+||+++.+.........
T Consensus 117 ~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~-------------------------- 170 (254)
T cd07490 117 EEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF-------------------------- 170 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC--------------------------
Confidence 655565554 69999999999998766666778999999997543210000000
Q ss_pred cCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEe
Q 004113 378 AKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVI 457 (773)
Q Consensus 378 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 457 (773)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCC
Q 004113 458 SSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGK 537 (773)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (773)
........+.+|... +...||||+|||.+|+++.... .
T Consensus 171 ---------------------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~--------~ 208 (254)
T cd07490 171 ---------------------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA--------N 208 (254)
T ss_pred ---------------------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccccCC--------C
Confidence 001122223344332 4678999999999999865221 1
Q ss_pred CCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 538 EPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 538 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
..+.|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 209 ~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 209 GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1278999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=359.58 Aligned_cols=254 Identities=23% Similarity=0.308 Sum_probs=183.7
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 128 SPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 128 ~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
..+|+.+++|+||+||||||||+..|| |...++ .+. + .+..+ ......
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~---------------~----~~~~~-----~~~~~~ 58 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVR---------------V----VLAPG-----ATDPAC 58 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cce---------------e----ecCCC-----CCCCCC
Confidence 369999999999999999999999888 654321 000 0 00000 013356
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCC
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSA 287 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (773)
|..||||||||++ .||||+|+|+.+|++.. ...+++++|+||++++++|||||||...
T Consensus 59 D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~dVIn~SlG~~~ 116 (298)
T cd07494 59 DENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSPDIISNSWGYDL 116 (298)
T ss_pred CCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCCCEEEeecccCC
Confidence 7889999999865 58999999999999864 4567899999999999999999999864
Q ss_pred CCCC-------CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 288 GIVR-------PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 288 ~~~~-------~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
.... .....++..++.+|.++|++||+||||++. .++...|++|+||+++.+.. +..
T Consensus 117 ~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~---- 180 (298)
T cd07494 117 RSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR---- 180 (298)
T ss_pred CCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc----
Confidence 2101 012345778888899999999999999874 45778899999999754320 000
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCce------
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDI------ 514 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI------ 514 (773)
......+.|++. ..+++.|||+
T Consensus 181 ------------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~~g~ 208 (298)
T cd07494 181 ------------------------------------------------RASSYASGFRSK----IYPGRQVPDVCGLVGM 208 (298)
T ss_pred ------------------------------------------------cccccccCcccc----cCCCCccCccccccCc
Confidence 000001111111 1246677776
Q ss_pred ----------EeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 004113 515 ----------TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584 (773)
Q Consensus 515 ----------~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~ 584 (773)
+|||..|.+...... ......+.|..++|||||||||||++|||+|++|.|++++||.+|++||++
T Consensus 209 ~~~~~~~~~~~APG~~i~~~~~~~~----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~ 284 (298)
T cd07494 209 LPHAAYLMLPVPPGSQLDRSCAAFP----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARD 284 (298)
T ss_pred CCcccccccccCCCcceeccccCCC----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcc
Confidence 479999876553210 001112679999999999999999999999999999999999999999998
Q ss_pred cCC
Q 004113 585 TNN 587 (773)
Q Consensus 585 ~~~ 587 (773)
+..
T Consensus 285 ~~~ 287 (298)
T cd07494 285 VTK 287 (298)
T ss_pred cCC
Confidence 755
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=359.79 Aligned_cols=267 Identities=27% Similarity=0.316 Sum_probs=186.9
Q ss_pred CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCC
Q 004113 133 SQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGH 212 (773)
Q Consensus 133 ~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gH 212 (773)
.+++|+||+|||||+|||++||+|.+... ...+|.+. ....|..+|
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~-------~~~~d~~gH 48 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG-------EDVQDGHGH 48 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC-------CCCCCCCCc
Confidence 57899999999999999999999975321 11222221 235678999
Q ss_pred chhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCC---
Q 004113 213 GTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGI--- 289 (773)
Q Consensus 213 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~--- 289 (773)
||||||||+|+..+ +...||||+|+|+.+|++...+.....+++++|+||++.+++|||||||.....
T Consensus 49 GT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~ 119 (297)
T cd07480 49 GTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVD 119 (297)
T ss_pred HHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCccccc
Confidence 99999999997633 334799999999999999877677788899999999999999999999985410
Q ss_pred ----CCCCCCcHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCccc-----CCCcEEEEcccccCcce
Q 004113 290 ----VRPLTDDPIALGAFHA---------------VEHGITVVCSAGNDGPSSGSVVN-----FAPWIFTVAASTIDRDF 345 (773)
Q Consensus 290 ----~~~~~~~~~~~~~~~a---------------~~~Gi~vV~aAGN~g~~~~~~~~-----~~p~vitVga~~~~~~~ 345 (773)
........++.....+ .++|++||+||||++........ ..++++.|+++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~--- 196 (297)
T cd07480 120 QGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL--- 196 (297)
T ss_pred ccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC---
Confidence 0111122233333333 67999999999999854322211 11233333322110
Q ss_pred eeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhc
Q 004113 346 ESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKD 425 (773)
Q Consensus 346 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~ 425 (773)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC
Q 004113 426 GVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL 505 (773)
Q Consensus 426 ~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 505 (773)
+....|+++.+.
T Consensus 197 ------------------------------------------------------------------~~~~~~~~~~~~-- 208 (297)
T cd07480 197 ------------------------------------------------------------------GRTGNFSAVANF-- 208 (297)
T ss_pred ------------------------------------------------------------------CCCCCccccCCC--
Confidence 112223333221
Q ss_pred CCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004113 506 TRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQT 585 (773)
Q Consensus 506 ~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~ 585 (773)
...||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|++++.+++.+|+......
T Consensus 209 --~~~~~dv~ApG~~i~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~ 274 (297)
T cd07480 209 --SNGEVDIAAPGVDIVSAAPG------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAA 274 (297)
T ss_pred --CCCceEEEeCCCCeEeecCC------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhc
Confidence 23578999999999999887 8899999999999999999999999999999988888887432221
Q ss_pred CCCCCccccCCCCCCCCCCCCccccccc
Q 004113 586 NNLRAPITTNSGAAATPYDFGAGEVSTT 613 (773)
Q Consensus 586 ~~~g~~~~~~~~~~~~~~~~G~G~id~~ 613 (773)
... ..........+|+|++++.
T Consensus 275 ~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 275 RTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred ccC------CCCCCCChhhcCCceeecC
Confidence 100 0001226678999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=360.20 Aligned_cols=278 Identities=25% Similarity=0.309 Sum_probs=202.8
Q ss_pred CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCC
Q 004113 133 SQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGH 212 (773)
Q Consensus 133 ~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gH 212 (773)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.. ...|..+|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~---------~~~d~~~H 56 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD---------TKDDVDGH 56 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC---------CCCCCCCC
Confidence 58899999999999999999999976421 0111 12345554444332 22378999
Q ss_pred chhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCC-CCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC
Q 004113 213 GTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY-GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR 291 (773)
Q Consensus 213 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g-~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 291 (773)
||||||||+|...+... ...+.||||+|+|+.+|++...+ .....++..+++++.+.+++|||||||....
T Consensus 57 GT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~--- 128 (293)
T cd04842 57 GTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVN--- 128 (293)
T ss_pred cchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCc---
Confidence 99999999998644321 11469999999999999988763 2566678999999999999999999998762
Q ss_pred CCCCcHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCC
Q 004113 292 PLTDDPIALGAFHAV-E-HGITVVCSAGNDGPSSG---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSN 366 (773)
Q Consensus 292 ~~~~~~~~~~~~~a~-~-~Gi~vV~aAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 366 (773)
. .......++.++. + +|++||+||||++.... ..+...+++|+|||++.+.....
T Consensus 129 ~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------------- 188 (293)
T cd04842 129 N-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------------- 188 (293)
T ss_pred c-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------------
Confidence 1 1233333444433 3 89999999999997654 45567799999999765431000
Q ss_pred CCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc
Q 004113 367 LQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA 446 (773)
Q Consensus 367 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 446 (773)
..|..
T Consensus 189 -------------------------~~~~~-------------------------------------------------- 193 (293)
T cd04842 189 -------------------------EGGLG-------------------------------------------------- 193 (293)
T ss_pred -------------------------ccccc--------------------------------------------------
Confidence 00000
Q ss_pred ccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeec
Q 004113 447 SSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWM 526 (773)
Q Consensus 447 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~ 526 (773)
.......++.||++||+. ++++||||+|||++|+++..
T Consensus 194 ----------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~ 231 (293)
T cd04842 194 ----------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARS 231 (293)
T ss_pred ----------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccC
Confidence 001135789999999987 59999999999999999975
Q ss_pred CCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 004113 527 GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN-----P---TFSPSEIKSAVMTTAT 583 (773)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p---~ls~~~Ik~~L~~TA~ 583 (773)
... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 232 ~~~---~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 232 GGG---GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCC---CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 420 0011223688999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=350.47 Aligned_cols=241 Identities=29% Similarity=0.371 Sum_probs=191.9
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 140 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
|+|||||+||+++||+|.+.. ++...+++... .....|..+||||||||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~------~~~~~~~~~HGT~vAgi 49 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN------NDPTSDIDGHGTACAGV 49 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC------CCCCCCCCCCHHHHHHH
Confidence 689999999999999998530 01111111111 12356789999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHH
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIA 299 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~ 299 (773)
|+|+..+ ...+.||||+|+|+.+|++...+.+...++.++++++++.+++|||||||.... .......+.
T Consensus 50 iag~~~~--------~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~--~~~~~~~~~ 119 (242)
T cd07498 50 AAAVGNN--------GLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDS--TESISSAID 119 (242)
T ss_pred HHhccCC--------CceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCC--CchHHHHHH
Confidence 9998632 234689999999999999987766788899999999999999999999998653 334556777
Q ss_pred HHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEc
Q 004113 300 LGAFHAVE-HGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYA 378 (773)
Q Consensus 300 ~~~~~a~~-~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~ 378 (773)
.++.++.+ +|+++|+||||+|......+...+++|+||+++.+
T Consensus 120 ~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------------ 163 (242)
T cd07498 120 NAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------------ 163 (242)
T ss_pred HHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC------------------------------------
Confidence 77888888 99999999999998766667778999999985421
Q ss_pred CCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEec
Q 004113 379 KSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVIS 458 (773)
Q Consensus 379 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 458 (773)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCC
Q 004113 459 SKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKE 538 (773)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~ 538 (773)
+.++.||++||.. |++|||.++.......... ....
T Consensus 164 ---------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~---~~~~ 199 (242)
T cd07498 164 ---------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA---GDYP 199 (242)
T ss_pred ---------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc---ccCC
Confidence 3578899999976 9999999998875432110 1122
Q ss_pred CCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 539 PPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 539 ~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
.+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 200 ~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 200 GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 3678999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=347.22 Aligned_cols=250 Identities=30% Similarity=0.427 Sum_probs=192.6
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCCCCcccc---cccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCch
Q 004113 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKG---TCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGT 214 (773)
Q Consensus 138 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g---~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGT 214 (773)
+||+|||||||||++||+|.+. .|.. .+..+.+.+....-++..+. ++.. ...++.|..+|||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~d~~~HGT 67 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDGNGYVDDIYGW-NFVN------NDNDPMDDNGHGT 67 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCCCCcccCCCcc-cccC------CCCCCCCCCCcHH
Confidence 6899999999999999999864 2221 11111111110011111111 1111 2255678899999
Q ss_pred hhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCC
Q 004113 215 HVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLT 294 (773)
Q Consensus 215 hVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 294 (773)
||||||+|...++ ..+.||||+|+|+.+|++...+.+...+++++++++++.+++|||+|||....
T Consensus 68 ~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~------ 133 (259)
T cd07473 68 HVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP------ 133 (259)
T ss_pred HHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC------
Confidence 9999999986432 23589999999999999988866888999999999999999999999997652
Q ss_pred CcHHHHHHHHHHhCCcEEEEecCCCCCCC---CCccc--CCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCC
Q 004113 295 DDPIALGAFHAVEHGITVVCSAGNDGPSS---GSVVN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQK 369 (773)
Q Consensus 295 ~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 369 (773)
...+..++.++.++|+++|+||||++... ..++. ..+++|+||+.+.
T Consensus 134 ~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~---------------------------- 185 (259)
T cd07473 134 SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS---------------------------- 185 (259)
T ss_pred CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC----------------------------
Confidence 46677778889999999999999998652 22222 3478888887532
Q ss_pred CCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccC
Q 004113 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSY 449 (773)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~ 449 (773)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCC
Q 004113 450 GTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGND 529 (773)
Q Consensus 450 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~ 529 (773)
.+.++.||++||. +||+.|||.++++....
T Consensus 186 -----------------------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-- 215 (259)
T cd07473 186 -----------------------------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPG-- 215 (259)
T ss_pred -----------------------------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCC--
Confidence 1356679999985 46999999999997765
Q ss_pred CCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 530 TGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 530 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
+.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 216 ----------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 ----------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ----------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=352.20 Aligned_cols=260 Identities=27% Similarity=0.349 Sum_probs=190.4
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccc--------CCceeEeeeeccccc-c--ccCCCCCCC
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFS--------CNRKIIGARFYDIED-D--VVANGQSPR 207 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~--------~n~ki~~~~~~~~~~-~--~~~~~~~~~ 207 (773)
||+|||||||||++||+|.+... .+.+|.... ...+.....++.+.. . .........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~------------~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 68 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLL------------PGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVS 68 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccc------------cCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCC
Confidence 79999999999999999986431 111111000 000000000000000 0 001123455
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh----------hCCCc
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI----------ADGVD 277 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~----------~~g~d 277 (773)
+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. +...+++++|++|++ .++++
T Consensus 69 ~~~~HGT~vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~-~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~ 139 (285)
T cd07496 69 PSSWHGTHVAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKC-GGTLSDIVDGMRWAAGLPVPGVPVNPNPAK 139 (285)
T ss_pred CCCCCHHHHHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCC-CCcHHHHHHHHHHHhccCcCCCcccCCCCe
Confidence 6789999999999998643 2335899999999999999877 348889999999998 46789
Q ss_pred EEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceE
Q 004113 278 VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 278 VIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
|||||||.... . ...+..++.++.++|++||+||||++... ...+...+++|+||+++.
T Consensus 140 Iin~S~G~~~~---~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 199 (285)
T cd07496 140 VINLSLGGDGA---C--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL--------------- 199 (285)
T ss_pred EEEeCCCCCCC---C--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC---------------
Confidence 99999998652 1 46677788999999999999999999765 455566789999998532
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
.+.++.||++||.. ||+|
T Consensus 200 ------------------------------------------------------~~~~~~~S~~g~~v--------di~a 217 (285)
T cd07496 200 ------------------------------------------------------RGQRASYSNYGPAV--------DVSA 217 (285)
T ss_pred ------------------------------------------------------CCCcccccCCCCCC--------CEEe
Confidence 13678899999976 9999
Q ss_pred CCccEEeeecCCCCCC---CCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 517 PGVNILAAWMGNDTGE---APEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 517 PG~~I~sa~~~~~~~~---~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
||++|.++........ .........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 218 pG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 218 PGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999998876532110 0112223678999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=338.65 Aligned_cols=227 Identities=30% Similarity=0.463 Sum_probs=188.3
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
||+|||||+||+++||+|.+.- ...++|.... + ....|..+|||||||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~---------------------------~~~~~~~~~~----~-~~~~~~~~HGT~vA~ 48 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI---------------------------VGGANFTGDD----N-NDYQDGNGHGTHVAG 48 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc---------------------------cCcccccCCC----C-CCCCCCCCCHHHHHH
Confidence 7999999999999999997531 1111222110 0 245678899999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
||++.... ..+.|+||+|+|+.+|++...+.....+++++++++++.+++|||||||.... ...+
T Consensus 49 ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~------~~~~ 113 (229)
T cd07477 49 IIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD------SPAL 113 (229)
T ss_pred HHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC------CHHH
Confidence 99997632 24689999999999999988766778899999999999999999999997642 3456
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeE
Q 004113 299 ALGAFHAVEHGITVVCSAGNDGPSSGSV--VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLI 376 (773)
Q Consensus 299 ~~~~~~a~~~Gi~vV~aAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v 376 (773)
..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 114 ~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~---------------------------------- 159 (229)
T cd07477 114 REAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN---------------------------------- 159 (229)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC----------------------------------
Confidence 6677888999999999999999776554 6677899999985432
Q ss_pred EcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEE
Q 004113 377 YAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTV 456 (773)
Q Consensus 377 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~ 456 (773)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCC
Q 004113 457 ISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEG 536 (773)
Q Consensus 457 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~ 536 (773)
+.++.||++|+.. |++|||++|+++++.
T Consensus 160 -----------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~--------- 187 (229)
T cd07477 160 -----------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN--------- 187 (229)
T ss_pred -----------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC---------
Confidence 3566889999865 999999999999887
Q ss_pred CCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 537 KEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 537 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 188 ---~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 188 ---NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ---CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=347.50 Aligned_cols=246 Identities=21% Similarity=0.209 Sum_probs=176.0
Q ss_pred CCCCCC-CCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 129 PSLNSQ-DQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 129 ~~~~~~-~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
++|+.. ..|+||+|+|||+|||.+||+|.++.... . ....+.
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~---------------------------~----------~~~~~~ 48 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL---------------------------I----------SGLTDQ 48 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc---------------------------c----------CCCCCC
Confidence 588874 45999999999999999999998542100 0 001245
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh----CCCcEEEecc
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA----DGVDVLSLSL 283 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~----~g~dVIN~Sl 283 (773)
|..+|||||||||+|.. ++..+.||||+|+|+.+|++. .++++++|.+|++ .++.+|||||
T Consensus 49 d~~gHGT~VAGiIaa~~---------n~~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~ 113 (277)
T cd04843 49 ADSDHGTAVLGIIVAKD---------NGIGVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQT 113 (277)
T ss_pred CCCCCcchhheeeeeec---------CCCceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccc
Confidence 78899999999999863 122358999999999999985 2355666666665 4567899999
Q ss_pred CCCCCCCC---CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc-------------cCCCcEEEEcccccCcceee
Q 004113 284 GGSAGIVR---PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVV-------------NFAPWIFTVAASTIDRDFES 347 (773)
Q Consensus 284 G~~~~~~~---~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~-------------~~~p~vitVga~~~~~~~~~ 347 (773)
|....... ......+..++.++.++|+++|+||||++....... ...|++|+|||++.+.
T Consensus 114 g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~---- 189 (277)
T cd04843 114 GGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT---- 189 (277)
T ss_pred cCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC----
Confidence 98642101 112344556778888999999999999986421111 0124566776643210
Q ss_pred EEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhccc
Q 004113 348 DIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGV 427 (773)
Q Consensus 348 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~ 427 (773)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCC
Q 004113 428 KSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTR 507 (773)
Q Consensus 428 ~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d 507 (773)
...++.||++||..
T Consensus 190 ---------------------------------------------------------------~~~~~~fSn~G~~v--- 203 (277)
T cd04843 190 ---------------------------------------------------------------GHTRLAFSNYGSRV--- 203 (277)
T ss_pred ---------------------------------------------------------------CCccccccCCCCcc---
Confidence 11378999999976
Q ss_pred CCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHHHHHhcc
Q 004113 508 NILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----Q-NPTFSPSEIKSAVMTTA 582 (773)
Q Consensus 508 ~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~ls~~~Ik~~L~~TA 582 (773)
||.|||++|+++........ .....+.|..++|||||||||||++|||++ + +|+|+++|||++|+.|+
T Consensus 204 -----di~APG~~i~s~~~~~~~~~--~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~ 276 (277)
T cd04843 204 -----DVYGWGENVTTTGYGDLQDL--GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATG 276 (277)
T ss_pred -----ceEcCCCCeEecCCCCcccc--cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999999987532100 011113457899999999999999999975 3 49999999999999997
Q ss_pred c
Q 004113 583 T 583 (773)
Q Consensus 583 ~ 583 (773)
.
T Consensus 277 ~ 277 (277)
T cd04843 277 T 277 (277)
T ss_pred C
Confidence 3
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=354.05 Aligned_cols=277 Identities=30% Similarity=0.452 Sum_probs=209.8
Q ss_pred EEEEEccCCCCCCCCCC-CCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 141 IIGILDTGVWPESESFN-DKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 141 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
+|||||+|||++||+|. ..- ...++.+.+.|.+.. .......|..+||||||||
T Consensus 1 ~V~viDtGid~~h~~~~~~~~----------------------~~~~~~~~~~~~~~~---~~~~~~~~~~~HGT~va~i 55 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF----------------------IWSKVPGGYNFVDGN---PNPSPSDDDNGHGTHVAGI 55 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE----------------------EEEEEEEEEETTTTB---STTTSSSTSSSHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCCc----------------------ccccccceeeccCCC---CCcCccccCCCccchhhhh
Confidence 69999999999999997 320 112334455554432 1224567788999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh-hCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI-ADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
|+|.. . . ......|+||+|+|+.+|++...+ ....+++++|++++ +.+++|||||||...........+.+
T Consensus 56 i~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~ 127 (282)
T PF00082_consen 56 IAGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDIL 127 (282)
T ss_dssp HHHTT-S-S-----SSSSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHH
T ss_pred ccccc-c-c-----cccccccccccccccccccccccc-cccccccchhhhhhhccCCcccccccccccccccccccccc
Confidence 99986 2 1 223358999999999999987774 77888999999999 89999999999883210022233445
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceee
Q 004113 299 ALGAFHAVEHGITVVCSAGNDGPSSGS---VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPL 375 (773)
Q Consensus 299 ~~~~~~a~~~Gi~vV~aAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 375 (773)
..+++.+.++|+++|+||||++..... .+...+++|+||+++.+
T Consensus 128 ~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------------- 174 (282)
T PF00082_consen 128 EEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------------- 174 (282)
T ss_dssp HHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------------
T ss_pred ccccccccccCcceeeccccccccccccccccccccccccccccccc---------------------------------
Confidence 667778889999999999999876543 33445788888875321
Q ss_pred EEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEE
Q 004113 376 IYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLT 455 (773)
Q Consensus 376 v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~ 455 (773)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCC
Q 004113 456 VISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPE 535 (773)
Q Consensus 456 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~ 535 (773)
+.++.||++|+... ++++||||+|||.+|.+.++...
T Consensus 175 ------------------------------------~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~------ 211 (282)
T PF00082_consen 175 ------------------------------------GQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD------ 211 (282)
T ss_dssp ------------------------------------SSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE------
T ss_pred ------------------------------------cccccccccccccc-ccccccccccccccccccccccc------
Confidence 25688999976543 68999999999999999887611
Q ss_pred CCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCccccccccc
Q 004113 536 GKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTAS 615 (773)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A 615 (773)
...|..++|||||||+|||++|||+|++|++++.+||.+|++||.++.... ....+..||||+||+.+|
T Consensus 212 ---~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a 280 (282)
T PF00082_consen 212 ---RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKA 280 (282)
T ss_dssp ---SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHH
T ss_pred ---cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHH
Confidence 034788999999999999999999999999999999999999999987221 123667889999999998
Q ss_pred CC
Q 004113 616 LQ 617 (773)
Q Consensus 616 ~~ 617 (773)
++
T Consensus 281 ~~ 282 (282)
T PF00082_consen 281 LN 282 (282)
T ss_dssp HH
T ss_pred hC
Confidence 74
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=339.14 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=119.4
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeecccccccc-CCCCCCCCCCCCchh
Q 004113 137 ESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVV-ANGQSPRDMVGHGTH 215 (773)
Q Consensus 137 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~-~~~~~~~d~~gHGTh 215 (773)
+++|+|||||||||++||+|.+.- ..+.+|. .....+ .......|..|||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i------------~~~~~~~---------------~~~~~~~~~~~~~~d~~gHGT~ 54 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI------------IGGKSFS---------------PYEGDGNKVSPYYVSADGHGTA 54 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc------------ccCCCCC---------------CCCCCcccCCCCCCCCCCcHHH
Confidence 789999999999999999997531 1111221 110000 001223578899999
Q ss_pred hHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCC------CCCHHHHHHHHHHHhhCCCcEEEeccCCCCCC
Q 004113 216 VASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY------GCTGSNILAAFDDAIADGVDVLSLSLGGSAGI 289 (773)
Q Consensus 216 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g------~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 289 (773)
|||||+ |+||+|+|+.+|++...+ .+....+++||+||+++|+||||||||.....
T Consensus 55 vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~ 116 (247)
T cd07491 55 MARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPE 116 (247)
T ss_pred HHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccc
Confidence 999995 589999999999998763 35677899999999999999999999986521
Q ss_pred CCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-Cc--ccCCCcEEEEccccc
Q 004113 290 VRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SV--VNFAPWIFTVAASTI 341 (773)
Q Consensus 290 ~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~--~~~~p~vitVga~~~ 341 (773)
........+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.
T Consensus 117 ~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 117 DNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred ccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 11223577888889999999999999999997654 33 344689999998643
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=343.62 Aligned_cols=154 Identities=29% Similarity=0.326 Sum_probs=107.1
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
.|+|||||||||++||+|.+.-.. ..+ .......+ ........ .......|..||||||||
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~----~~~-~~~~~~~~-------------~~~~~~~~-~~~~~~~d~~gHGT~vAg 61 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS----YSK-NLVPKGGY-------------DGKEAGET-GDINDIVDKLGHGTAVAG 61 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc----ccc-ccccCCCc-------------CCcccccc-CCCCcCCCCCCcHhHHHH
Confidence 389999999999999999853110 000 00000000 00000000 011345678999999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC-----CC
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR-----PL 293 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~-----~~ 293 (773)
+|+|+.. ..||||+|+|+.+|+++..+.....+++++|++|++++++|||||||....... ..
T Consensus 62 iia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~ 129 (294)
T cd07482 62 QIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDV 129 (294)
T ss_pred HHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchh
Confidence 9998642 249999999999999988755588899999999999999999999998542111 11
Q ss_pred CCcHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 004113 294 TDDPIALGAFHAVEHGITVVCSAGNDGPSS 323 (773)
Q Consensus 294 ~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~ 323 (773)
..+.+..++..+.++|++||+||||+|...
T Consensus 130 ~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 130 EYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred hhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 124466677788899999999999998643
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=336.80 Aligned_cols=366 Identities=25% Similarity=0.328 Sum_probs=274.8
Q ss_pred CCceEEEEeccCCCCCCCchhHHHHHHHHHhcccC---------ccEEEEecceeeEEEEEcC-----HHHHHHHhCCCC
Q 004113 29 KNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKK---------NSIIRSYKHGFSGFAARLS-----AEEAHALSKKPG 94 (773)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~y~~~~ng~s~~l~-----~~~i~~L~~~p~ 94 (773)
.+..|||+|+.-. . ...+..++++.+...+ ...--+|...|.-+.++-. ..+|++|..+|+
T Consensus 48 ve~EyIv~F~~y~-~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 48 VESEYIVRFKQYK-P----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred ecceeEEEecccc-c----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 3567999999776 3 4566777877776332 2334456667776666543 335899999999
Q ss_pred eEEEecCceeccccc------------cCcccc-Cc-------------ccccc---------cCCCCCCCCCCCCCCCC
Q 004113 95 VVSIFPDPVLQLHTT------------RSWDFL-KI-------------QTDVL---------IDSVPSPSLNSQDQESD 139 (773)
Q Consensus 95 V~~V~~~~~~~~~~~------------~~~~~~-gl-------------~~~~~---------~~~~~~~~~~~~~~G~G 139 (773)
|+.|.|.+.+..... ..-.++ |. ....+ ....++-+|+.|+||++
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~ 202 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAK 202 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCc
Confidence 999999876532100 000000 00 00000 01123679999999999
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 140 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
|+|||.|||+.-+||.|+.- ....++. +...-.|..||||.|||+
T Consensus 203 VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWT-------NE~tLdD~lgHGTFVAGv 247 (1033)
T KOG4266|consen 203 VKVAIFDTGLRADHPHFRNV----------------------------KERTNWT-------NEDTLDDNLGHGTFVAGV 247 (1033)
T ss_pred eEEEEeecccccCCccccch----------------------------hhhcCCc-------CccccccCcccceeEeee
Confidence 99999999999999999731 1111122 124566789999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHH
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIA 299 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~ 299 (773)
|||.. .-.|.||+++|++.|||-+.--..++++++|+.||+....||+|+|+|++. +++.++-
T Consensus 248 ia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD-----fmD~PFV 310 (1033)
T KOG4266|consen 248 IAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD-----FMDLPFV 310 (1033)
T ss_pred eccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc-----cccchHH
Confidence 99874 237999999999999998875688899999999999999999999999854 4566666
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCCcccCCC--cEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEE
Q 004113 300 LGAFHAVEHGITVVCSAGNDGPSSGSVVNFAP--WIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIY 377 (773)
Q Consensus 300 ~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p--~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~ 377 (773)
.-+.......|++|.|+||+||-.++..+++. .||.||..
T Consensus 311 eKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI-------------------------------------- 352 (1033)
T KOG4266|consen 311 EKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI-------------------------------------- 352 (1033)
T ss_pred HHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc--------------------------------------
Confidence 66677788999999999999999888877653 44555431
Q ss_pred cCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEe
Q 004113 378 AKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVI 457 (773)
Q Consensus 378 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i 457 (773)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC----CCCCccCceEeCCccEEeeecCCCCCCC
Q 004113 458 SSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL----TRNILKPDITAPGVNILAAWMGNDTGEA 533 (773)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~d~~iKPDI~APG~~I~sa~~~~~~~~~ 533 (773)
+-.+.+|.|||||-+.. .-||.||||++-|.+|......
T Consensus 353 -------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------ 395 (1033)
T KOG4266|consen 353 -------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------ 395 (1033)
T ss_pred -------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------
Confidence 11358999999997543 1588999999999999877665
Q ss_pred CCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCccc
Q 004113 534 PEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGE 609 (773)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~ 609 (773)
.+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-++||+|+
T Consensus 396 ------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGk 457 (1033)
T KOG4266|consen 396 ------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGK 457 (1033)
T ss_pred ------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcc
Confidence 7788999999999999999999976 234468999999999999999875 558999999
Q ss_pred ccccccCCCceeecC
Q 004113 610 VSTTASLQPGLVYET 624 (773)
Q Consensus 610 id~~~A~~~~lv~~~ 624 (773)
+|+.++++--+-|..
T Consensus 458 ldLL~syqiL~SYkP 472 (1033)
T KOG4266|consen 458 LDLLESYQILKSYKP 472 (1033)
T ss_pred hhHHHHHHHHHhcCC
Confidence 999999884444443
|
|
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=324.73 Aligned_cols=222 Identities=20% Similarity=0.280 Sum_probs=174.8
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
||+|||||||||++||+|.+.... +..+. ... +. .+.....|..||||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~~---------~~~-~~------~~~~~~~d~~gHGT~vAg 52 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVTI---------DLE-II------VVSAEGGDKDGHGTACAG 52 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------ccccc---------ccc-cc------cCCCCCCCCCCcHHHHHH
Confidence 799999999999999999853210 00010 000 00 112445678999999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
||++. +|+++|+.+|+++..+.+...++++||+|+++++++|||||||.... .....+
T Consensus 53 iia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~----~~~~~~ 110 (222)
T cd07492 53 IIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD----RDFPLL 110 (222)
T ss_pred HHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC----CcCHHH
Confidence 99853 69999999999998867888999999999999999999999998652 233566
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEc
Q 004113 299 ALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYA 378 (773)
Q Consensus 299 ~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~ 378 (773)
..++.++.++|+++|+||||++.... .+...+++|+|++...++
T Consensus 111 ~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------------- 154 (222)
T cd07492 111 KELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD----------------------------------- 154 (222)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-----------------------------------
Confidence 77788888999999999999986433 255668888888743211
Q ss_pred CCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEec
Q 004113 379 KSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVIS 458 (773)
Q Consensus 379 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~ 458 (773)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCC
Q 004113 459 SKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKE 538 (773)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~ 538 (773)
..+ .+++ ++|+.|||.+|+++.+.
T Consensus 155 ----------------------------------~~~---~~~~--------~~~~~apg~~i~~~~~~----------- 178 (222)
T cd07492 155 ----------------------------------PKS---FWYI--------YVEFSADGVDIIAPAPH----------- 178 (222)
T ss_pred ----------------------------------Ccc---cccC--------CceEEeCCCCeEeecCC-----------
Confidence 111 1122 34999999999999877
Q ss_pred CCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 539 PPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 539 ~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
+.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 179 -~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 179 -GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=342.27 Aligned_cols=251 Identities=21% Similarity=0.235 Sum_probs=181.3
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
...+|+.+++|+||+|+|||||||++||+|.+.... ...++|.... ....+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~----~~~~~ 78 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND----PDPTP 78 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC----CCCCC
Confidence 347999999999999999999999999999754210 0111111111 00122
Q ss_pred --CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccC
Q 004113 207 --RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLG 284 (773)
Q Consensus 207 --~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG 284 (773)
.|..+|||||||||+|+..+. ....||||+|+|+.+|++... .....+..++.++.+ .++|||||||
T Consensus 79 ~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~Vin~S~g 147 (297)
T cd04059 79 RYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD-YIDIYSNSWG 147 (297)
T ss_pred ccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-CceEEECCCC
Confidence 278899999999999986322 135899999999999998764 334455666666554 4699999999
Q ss_pred CCCCCC-CCCCCcHHHHHHHHHHh-----CCcEEEEecCCCCCCCCCc----ccCCCcEEEEcccccCcceeeEEEECCc
Q 004113 285 GSAGIV-RPLTDDPIALGAFHAVE-----HGITVVCSAGNDGPSSGSV----VNFAPWIFTVAASTIDRDFESDIVLGGN 354 (773)
Q Consensus 285 ~~~~~~-~~~~~~~~~~~~~~a~~-----~Gi~vV~aAGN~g~~~~~~----~~~~p~vitVga~~~~~~~~~~~~~g~~ 354 (773)
...... ..........++.++.+ +|+++|+||||+|...... ....|++|+|||++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------------ 215 (297)
T cd04059 148 PDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------------ 215 (297)
T ss_pred CCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC------------
Confidence 865310 01122334444455543 6999999999999733221 1245788888875331
Q ss_pred eEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceE
Q 004113 355 KVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVG 434 (773)
Q Consensus 355 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g 434 (773)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCce
Q 004113 435 VIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDI 514 (773)
Q Consensus 435 ~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI 514 (773)
+.++.||++|+.. ++
T Consensus 216 ---------------------------------------------------------g~~~~~s~~g~~~--------~~ 230 (297)
T cd04059 216 ---------------------------------------------------------GVRASYSEVGSSV--------LA 230 (297)
T ss_pred ---------------------------------------------------------CCCcCCCCCCCcE--------EE
Confidence 3677899999987 89
Q ss_pred EeCCcc-------EEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 515 TAPGVN-------ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 515 ~APG~~-------I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
.|||.. |.++.... ....|..++|||||||+|||++|||+|+||+|++.+||.+|++||+
T Consensus 231 ~a~g~~~~~~~~~i~~~~~~~---------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 231 SAPSGGSGNPEASIVTTDLGG---------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred EecCCCCCCCCCceEeCCCCC---------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999987 66555431 0156788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=330.72 Aligned_cols=246 Identities=26% Similarity=0.330 Sum_probs=188.1
Q ss_pred CCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchh
Q 004113 136 QESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTH 215 (773)
Q Consensus 136 ~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGTh 215 (773)
+|+||+|+|||+||+++||+|.+....... +. .... .......|..+||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~------------~~-------------~~~~----~~~~~~~~~~~HGT~ 51 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASY------------YV-------------AVND----AGYASNGDGDSHGTH 51 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccc------------cc-------------cccc----ccCCCCCCCCChHHH
Confidence 699999999999999999999864211000 00 0000 001345678899999
Q ss_pred hHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCC-CCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC---
Q 004113 216 VASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY-GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR--- 291 (773)
Q Consensus 216 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g-~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~--- 291 (773)
|||+|+|+..+ ..+.|+||+|+|+.+|+++..+ .+....+.++++++++.+++|||||||.......
T Consensus 52 vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~ 122 (267)
T cd04848 52 VAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVST 122 (267)
T ss_pred HHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccccccc
Confidence 99999998633 4468999999999999998774 4677788999999999999999999998753111
Q ss_pred ------CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc---------cCCCcEEEEcccccCcceeeEEEECCceE
Q 004113 292 ------PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVV---------NFAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 292 ------~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~---------~~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
......+...+..+.++|+++|+||||++....... ...+++|+||+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------------- 189 (267)
T cd04848 123 TYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------------- 189 (267)
T ss_pred chhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------------
Confidence 124566677778888999999999999986543332 2347888888864421
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCcccc--ccCCCCCCCCCCCccCce
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAY--FSARGPSPLTRNILKPDI 514 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~d~~iKPDI 514 (773)
.... ||++|+.. -.+++
T Consensus 190 --------------------------------------------------------~~~~~~~s~~~~~~-----~~~~~ 208 (267)
T cd04848 190 --------------------------------------------------------TIASYSYSNRCGVA-----ANWCL 208 (267)
T ss_pred --------------------------------------------------------Ccccccccccchhh-----hhhee
Confidence 2223 47777643 24579
Q ss_pred EeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 004113 515 TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583 (773)
Q Consensus 515 ~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~ 583 (773)
+|||.+|.++.+... ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 209 ~apG~~i~~~~~~~~----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 209 AAPGENIYSTDPDGG----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ecCcCceeecccCCC----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999987311 67899999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=287.15 Aligned_cols=198 Identities=21% Similarity=0.161 Sum_probs=142.2
Q ss_pred CCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHH--hhCCCcEEEecc
Q 004113 206 PRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDA--IADGVDVLSLSL 283 (773)
Q Consensus 206 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a--~~~g~dVIN~Sl 283 (773)
..|..+|||||||||||. .|++|+++|+..++.. .....+..+++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~----~~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI----KSNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC----CCCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457899999999999987 3567999998765522 1233466777887 568999999999
Q ss_pred CCCCCCCC---CCCCcHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CCcccCCCcEEEEcccccCcceeeEEEECCc
Q 004113 284 GGSAGIVR---PLTDDPIALGAFHAVEH-GITVVCSAGNDGPSS-----GSVVNFAPWIFTVAASTIDRDFESDIVLGGN 354 (773)
Q Consensus 284 G~~~~~~~---~~~~~~~~~~~~~a~~~-Gi~vV~aAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~g~~ 354 (773)
|....... ....+.+..+++.+.++ |+++|+||||+|... ...+..++++|+|||++....
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 98653100 01234566667776665 999999999999743 122345688999998644210
Q ss_pred eEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceE
Q 004113 355 KVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVG 434 (773)
Q Consensus 355 ~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g 434 (773)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCce
Q 004113 435 VIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDI 514 (773)
Q Consensus 435 ~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI 514 (773)
....+.||++|-....++..||||
T Consensus 164 --------------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di 187 (247)
T cd07488 164 --------------------------------------------------------RFFASDVSNAGSEINSYGRRKVLI 187 (247)
T ss_pred --------------------------------------------------------cceecccccccCCCCCCCCceeEE
Confidence 012345555432222257899999
Q ss_pred EeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCC------HHHHHHHHHhcc
Q 004113 515 TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS------PSEIKSAVMTTA 582 (773)
Q Consensus 515 ~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls------~~~Ik~~L~~TA 582 (773)
+|||++|++ +. +.|..++|||||||||||++|||++++|++. --++|.+|+.|+
T Consensus 188 ~APG~~i~s--~~------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 188 VAPGSNYNL--PD------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EEeeeeEEC--CC------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 999999998 33 6788999999999999999999999988776 445677766653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=299.88 Aligned_cols=240 Identities=26% Similarity=0.347 Sum_probs=186.9
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-CC-CCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YG-CTGSNILAAFDDAIADGVDVLSLSLGGS 286 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-g~-~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (773)
...|||||||||+|+..... ...||||+|+|+.+++.+.. |+ -+...+.+|+..++++++||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 46799999999999975533 34799999999999997654 22 3445789999999999999999999987
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccC---CCcEEEEcccccCcceeeEEEECCceEEeeeeec
Q 004113 287 AGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNF---APWIFTVAASTIDRDFESDIVLGGNKVIKGESIN 363 (773)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~---~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 363 (773)
.. .+..-..++..-+.+.++|+++|.||||+||...+++.+ .-.+|.|||.-......
T Consensus 381 a~--~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~----------------- 441 (1304)
T KOG1114|consen 381 AH--LPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ----------------- 441 (1304)
T ss_pred CC--CCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH-----------------
Confidence 65 455556666666666689999999999999998887764 35788888842211000
Q ss_pred cCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc
Q 004113 364 FSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 443 (773)
Q Consensus 364 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 443 (773)
..|.+
T Consensus 442 -------a~y~~-------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 442 -------AEYSV-------------------------------------------------------------------- 446 (1304)
T ss_pred -------hhhhh--------------------------------------------------------------------
Confidence 00000
Q ss_pred cccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEe
Q 004113 444 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA 523 (773)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~s 523 (773)
-.........||||||+. ||.+--.|+|||+.|.+
T Consensus 447 -------------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAs 481 (1304)
T KOG1114|consen 447 -------------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIAS 481 (1304)
T ss_pred -------------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccccC
Confidence 001124678899999998 79999999999999866
Q ss_pred eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCC
Q 004113 524 AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAA 599 (773)
Q Consensus 524 a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~ 599 (773)
--.-.. ..-..|.|||||+|+++|.+|||++ .+-.+||..||.+|++||.++++.
T Consensus 482 VP~~tl----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----------- 540 (1304)
T KOG1114|consen 482 VPQYTL----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----------- 540 (1304)
T ss_pred Cchhhh----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-----------
Confidence 422111 4557899999999999999999865 567899999999999999999875
Q ss_pred CCCCCCCcccccccccCC
Q 004113 600 ATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 600 ~~~~~~G~G~id~~~A~~ 617 (773)
.++.||.|+|++.+|.+
T Consensus 541 -d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 -DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred -chhccCcceeehhHHHH
Confidence 77999999999999987
|
|
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=269.11 Aligned_cols=235 Identities=34% Similarity=0.535 Sum_probs=177.5
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHh
Q 004113 140 TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAST 219 (773)
Q Consensus 140 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 219 (773)
|+|+|||+|++++||+|.... .....+.++ .... .......+..+||||||++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~---------~~~~~~~~~---------------~~~~---~~~~~~~~~~~HGt~va~~ 53 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLF---------GGGDGGNDD---------------DDNE---NGPTDPDDGNGHGTHVAGI 53 (241)
T ss_pred CEEEEEeCCCCCCCcchhccc---------cCccccccc---------------ccCc---CCCCCCCCCCCcHHHHHHH
Confidence 689999999999999872110 000000000 0000 0002345788999999999
Q ss_pred hccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh-hCCCcEEEeccCCCCCCCCCCCCcHH
Q 004113 220 AAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI-ADGVDVLSLSLGGSAGIVRPLTDDPI 298 (773)
Q Consensus 220 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~~~~~~~~~~~~ 298 (773)
|++...+ ....|+||+++|+.+|+....+......+++++++++ ..+++|||||||.... . ....+
T Consensus 54 i~~~~~~---------~~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~---~-~~~~~ 120 (241)
T cd00306 54 IAASANN---------GGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGS---P-PSSAL 120 (241)
T ss_pred HhcCCCC---------CCCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCC---C-CCHHH
Confidence 9998633 2238999999999999998775567888999999999 8999999999998762 2 44566
Q ss_pred HHHHHHHHhC-CcEEEEecCCCCCCCC---CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCcee
Q 004113 299 ALGAFHAVEH-GITVVCSAGNDGPSSG---SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYP 374 (773)
Q Consensus 299 ~~~~~~a~~~-Gi~vV~aAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 374 (773)
...+.++.++ |+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 121 ~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------------------- 169 (241)
T cd00306 121 SEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------------------- 169 (241)
T ss_pred HHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-------------------------------
Confidence 7777888877 9999999999997765 4566789999999865431
Q ss_pred eEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccE
Q 004113 375 LIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPL 454 (773)
Q Consensus 375 ~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~ 454 (773)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccc-cccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCC
Q 004113 455 TVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIA-YFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEA 533 (773)
Q Consensus 455 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~ 533 (773)
... .++++| .|||+.|||.++......
T Consensus 170 --------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~------ 197 (241)
T cd00306 170 --------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT------ 197 (241)
T ss_pred --------------------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC------
Confidence 111 334334 467999999999875111
Q ss_pred CCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 534 PEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 198 ----~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 ----GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred ----CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 11789999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=240.88 Aligned_cols=272 Identities=28% Similarity=0.397 Sum_probs=199.9
Q ss_pred CCCCC--CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 129 PSLNS--QDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 129 ~~~~~--~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
..|.. +.+|+|++|+|||+||+..||+|.+... ..++|.... +....
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~~ 179 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDGD----PEPPF 179 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccCC----CCCCC
Confidence 57777 8999999999999999999999986421 002222221 00124
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-CCCCHHHHHHHHHHHhhCC--CcEEEecc
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YGCTGSNILAAFDDAIADG--VDVLSLSL 283 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~g--~dVIN~Sl 283 (773)
.|..+|||||+|++++.... +.....|++|+++++.+|++... +.....+++.+++++++.+ +++||||+
T Consensus 180 ~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~ 252 (508)
T COG1404 180 LDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSL 252 (508)
T ss_pred CCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 68999999999999984211 22336899999999999999976 6788888999999999999 99999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----cccCC--CcEEEEcccccCcceeeEEEECCceE
Q 004113 284 GGSAGIVRPLTDDPIALGAFHAVEHG-ITVVCSAGNDGPSSGS----VVNFA--PWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 284 G~~~~~~~~~~~~~~~~~~~~a~~~G-i~vV~aAGN~g~~~~~----~~~~~--p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
|.. . .......+..++..+...| +++|+++||.+..... .+... +.+++|++...
T Consensus 253 g~~-~--~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------------- 314 (508)
T COG1404 253 GGS-L--SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------------- 314 (508)
T ss_pred CCC-c--cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------------
Confidence 986 1 3344566667778887777 9999999999866421 11111 24444444211
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
.+.++.||++|+.. ..+++|
T Consensus 315 ------------------------------------------------------~~~~~~~s~~g~~~------~~~~~a 334 (508)
T COG1404 315 ------------------------------------------------------SDTVASFSNDGSPT------GVDIAA 334 (508)
T ss_pred ------------------------------------------------------CCccccccccCCCC------CcceeC
Confidence 24778899999752 239999
Q ss_pred CCccEEe-----eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccCCCCC
Q 004113 517 PGVNILA-----AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP-TFSPSEIKSAVMTTATQTNNLRA 590 (773)
Q Consensus 517 PG~~I~s-----a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~ls~~~Ik~~L~~TA~~~~~~g~ 590 (773)
||.+|.+ .++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++......
T Consensus 335 pg~~i~~~~~~~~~~~~~----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (508)
T COG1404 335 PGVNILSLSAVNTLPGDG----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLS-- 402 (508)
T ss_pred CCccccccccceeeeCCc----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCC--
Confidence 9999988 444410 2499999999999999999999999999 899999999988888741111
Q ss_pred ccccCCCCCCCCCCCCcccccccccCC
Q 004113 591 PITTNSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 591 ~~~~~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
.....++.|..+...+..
T Consensus 403 ---------~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 403 ---------GVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ---------ccccccccCccccccccc
Confidence 144567777666665554
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=210.65 Aligned_cols=276 Identities=16% Similarity=0.153 Sum_probs=156.5
Q ss_pred Cchhh-HHHHHHHHHHHhhhhhcccccCCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccC----ccEEEEecceee
Q 004113 1 MKGLV-VLFPVLFLFLGSFFGDAAAAQGSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKK----NSIIRSYKHGFS 75 (773)
Q Consensus 1 Mk~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~y~~~~n 75 (773)
|++.. .-+++.++++++....+..+-..-...|+|+|+.+. . ......+....+-.. ......|+-.-+
T Consensus 1 m~~~t~s~l~a~fl~lf~~~~gag~~~~vftnhflv~l~~g~-g-----~~~ah~va~~hgf~nrg~~~a~d~eyhf~h~ 74 (629)
T KOG3526|consen 1 MMKNTHSDLIAVFLSLFCVMIGAGEAVDVFTNHFLVHLKEGG-G-----LEDAHRVAKRHGFINRGQVAASDNEYHFVHP 74 (629)
T ss_pred CCcchHHHHHHHHHHHHHHHhccccCcceeeeeEEEEEeccC-C-----hHHHHHHHHHhCccccccccccCceeeeecc
Confidence 44443 345666666666665555555566789999999886 3 111222222222111 111123332223
Q ss_pred EEEEE---cCHHHHHHHhCCCCeEEEecCceec-------cc-----------cccCccccCccccc---ccCCCCCCCC
Q 004113 76 GFAAR---LSAEEAHALSKKPGVVSIFPDPVLQ-------LH-----------TTRSWDFLKIQTDV---LIDSVPSPSL 131 (773)
Q Consensus 76 g~s~~---l~~~~i~~L~~~p~V~~V~~~~~~~-------~~-----------~~~~~~~~gl~~~~---~~~~~~~~~~ 131 (773)
++.-. -+...-++|.++|.|+-+....-+. +. -+..|-+....+.. ........+|
T Consensus 75 ~l~har~rrsl~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~aw 154 (629)
T KOG3526|consen 75 ALVHARTRRSLGHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAW 154 (629)
T ss_pred ccchhhhhcccchhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHH
Confidence 33211 1233457788888887765433221 10 00111111000000 0111224789
Q ss_pred CCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC--C
Q 004113 132 NSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD--M 209 (773)
Q Consensus 132 ~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d--~ 209 (773)
.+|++|++|++||+|.||||-|||+..+ | .--..++|..++.+ +++...| .
T Consensus 155 a~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfssndpf--pyprytddwf 207 (629)
T KOG3526|consen 155 ALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSSNDPF--PYPRYTDDWF 207 (629)
T ss_pred hhcccCCCceEEeecCCchhcCcchhcc------------------c-------CceeecccccCCCC--CCCcccchhh
Confidence 9999999999999999999999999732 1 12234455544332 1111122 5
Q ss_pred CCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEeccCCCCC
Q 004113 210 VGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSAG 288 (773)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~ 288 (773)
+.|||.|||-+++...++. +| .|||++.++..+|+++.. +..|+++|-..--+ ...+|.+-|||....
T Consensus 208 nshgtrcagev~aardngi--cg------vgvaydskvagirmldqp---ymtdlieansmghep~kihiysaswgptdd 276 (629)
T KOG3526|consen 208 NSHGTRCAGEVVAARDNGI--CG------VGVAYDSKVAGIRMLDQP---YMTDLIEANSMGHEPSKIHIYSASWGPTDD 276 (629)
T ss_pred hccCccccceeeeeccCCc--ee------eeeeeccccceeeecCCc---hhhhhhhhcccCCCCceEEEEecccCcCCC
Confidence 7899999999888765533 33 799999999999999865 66677666433222 357899999998643
Q ss_pred CCCCCCC---cHHHHHHHHHH-----hCCcEEEEecCCCCCC
Q 004113 289 IVRPLTD---DPIALGAFHAV-----EHGITVVCSAGNDGPS 322 (773)
Q Consensus 289 ~~~~~~~---~~~~~~~~~a~-----~~Gi~vV~aAGN~g~~ 322 (773)
....+ ++..+++.+-+ ..|-++|.|.|..|..
T Consensus 277 --gktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 277 --GKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred --CcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 12222 22223333333 3467999999987743
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=175.13 Aligned_cols=105 Identities=25% Similarity=0.312 Sum_probs=81.1
Q ss_pred cceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC---CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcE
Q 004113 235 AGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD---GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGIT 311 (773)
Q Consensus 235 ~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~ 311 (773)
-..+.||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||.........+.+.+..++.+|..+||.
T Consensus 80 v~~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 80 VEYAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 3446899999999999997642 45677888888876 9999999999875211112335677788888999999
Q ss_pred EEEecCCCCCCCC-----------CcccCCCcEEEEcccccCc
Q 004113 312 VVCSAGNDGPSSG-----------SVVNFAPWIFTVAASTIDR 343 (773)
Q Consensus 312 vV~aAGN~g~~~~-----------~~~~~~p~vitVga~~~~~ 343 (773)
||+||||+|.... ..+...|+|++||+++...
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999997653 2345679999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=108.55 Aligned_cols=114 Identities=26% Similarity=0.379 Sum_probs=90.9
Q ss_pred CCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccc--
Q 004113 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVAS-- 447 (773)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~-- 447 (773)
....+++|.+. |....+...+++|||+||+|+. |.+.+|..+++.+||.|+|++++.......
T Consensus 25 ~~~~~lv~~g~-------------g~~~d~~~~dv~GkIvL~~rg~--c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~ 89 (143)
T cd02133 25 GKTYELVDAGL-------------GTPEDFEGKDVKGKIALIQRGE--ITFVEKIANAKAAGAVGVIIYNNVDGLIPGTL 89 (143)
T ss_pred CcEEEEEEccC-------------CchhccCCCCccceEEEEECCC--CCHHHHHHHHHHCCCeEEEEeecCCCcccccC
Confidence 56778888765 5555666778999999999975 679999999999999999999988632211
Q ss_pred -cCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCC
Q 004113 448 -SYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPS 503 (773)
Q Consensus 448 -~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 503 (773)
....+|++.|+..+|..|++|+++ .+++.+..+.. ..+.+.++.||||||.
T Consensus 90 ~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 90 GEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred CCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 124689999999999999999988 56666665554 4567889999999996
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-10 Score=102.74 Aligned_cols=122 Identities=39% Similarity=0.627 Sum_probs=95.6
Q ss_pred EEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccc
Q 004113 349 IVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVK 428 (773)
Q Consensus 349 ~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~ 428 (773)
+.+||++++.|++++.... ..+++++.... ........|.+..++..+++|||++|+++.+ ..+.+|..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~-~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGN-TSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCC-ccHHHHHHHHH
Confidence 6789999999999996443 46777763321 1223447899988888999999999999753 17889999999
Q ss_pred cCCceEEEEEeCCCcccc--ccCccccEEEecHHHHHHHHHHHhcCCCceEE
Q 004113 429 SLGGVGVIVIDDQSRAVA--SSYGTFPLTVISSKEAAEILAYINSKRNPVAT 478 (773)
Q Consensus 429 ~~Ga~g~i~~~~~~~~~~--~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 478 (773)
.+||.|+|++++...... .....+|++.|+..++..|++|++++..++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999999998764322 22467999999999999999999998776554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=86.72 Aligned_cols=75 Identities=41% Similarity=0.599 Sum_probs=56.7
Q ss_pred eEEEEeccCCCCCCCchhHHHHHHHHHhc-------ccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCcee
Q 004113 32 VYIVYMGAAASGKGSLRDDHAQLLASMLK-------WKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVL 104 (773)
Q Consensus 32 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~ 104 (773)
+|||.|++.. ........+.+++.+++. ....++.+.|+..||||+++++++++++|+++|+|++|+||+.+
T Consensus 1 ~YIV~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v 79 (82)
T PF05922_consen 1 RYIVVFKDDA-SAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVV 79 (82)
T ss_dssp EEEEEE-TTS-THHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEE
T ss_pred CEEEEECCCC-CcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceE
Confidence 6999999987 533335666666664332 23589999999999999999999999999999999999999988
Q ss_pred ccc
Q 004113 105 QLH 107 (773)
Q Consensus 105 ~~~ 107 (773)
+++
T Consensus 80 ~l~ 82 (82)
T PF05922_consen 80 SLH 82 (82)
T ss_dssp EE-
T ss_pred ecC
Confidence 764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-07 Score=81.28 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=61.8
Q ss_pred EEEeccCCCccEEEEEEEEeccCCCCeEEEEEEeCC--------CC----------c-EEEEecCeEEEccCCcEEEEEE
Q 004113 673 IAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAP--------QG----------L-NVKVIPEELQFTKSGQKLSYQV 733 (773)
Q Consensus 673 ~~~~~~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~~--------~g----------~-~v~v~p~~~~~~~~~~~~~~~v 733 (773)
|++.++.. ..+++++++|.| +.+.+|+++.... .| . .++..|..+++ ++|++++|+|
T Consensus 1 i~L~d~~~--~~~~~itl~N~~-~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTGN--KFSFTITLHNYG-DKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE-S--EEEEEEEEEE-S-SS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccCC--ceEEEEEEEECC-CCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 34566644 689999999999 9999999986611 11 1 67778889998 6899999999
Q ss_pred EEEecc---CCCCCcEEEEEEEECC-c-eeEEEEEE
Q 004113 734 TFTSAL---SPLKEDVFGSITWSNG-K-YKVRSLFV 764 (773)
Q Consensus 734 t~~~~~---~~~~~~~~G~l~~~~~-~-~~v~~P~~ 764 (773)
+++.+. ...+.+++|+|.+++. . +.+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999953 3457899999999974 4 58999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.9e-07 Score=99.56 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
..|..+++|+++.|+|.|+|++..||+.... ....+.+++.....-...-.+...
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~~~p~~~~~~~~ 78 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHDNDPEPRCDGTN 78 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCCCCcccccCCCC
Confidence 6999999999999999999999999998742 111222222222110001112223
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEeccCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSA 287 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~ 287 (773)
...|||-||+-.+....+ ..-..|+++++++..++++... .++...+...... .-+++-..|||...
T Consensus 79 ~~~~g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~----v~~~~~~~~~~~~~~~~di~scsw~pdd 146 (431)
T KOG3525|consen 79 ENKHGTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC----VSDAVEAPSLGFGPCHIDIYSCSWGPDD 146 (431)
T ss_pred ccccCCCCCcccccccCC--------CcCCCCcccCccccceeeeeee----cccceecccccCCCCCceeecCcCCccc
Confidence 588999999999987522 2335899999999999998643 1233333322222 34789999999864
Q ss_pred CCCCCCCC-cHHHHHHHHH-----HhCCcEEEEecCCCCCCC
Q 004113 288 GIVRPLTD-DPIALGAFHA-----VEHGITVVCSAGNDGPSS 323 (773)
Q Consensus 288 ~~~~~~~~-~~~~~~~~~a-----~~~Gi~vV~aAGN~g~~~ 323 (773)
........ .....+...+ ..+|-+.+++.||.|...
T Consensus 147 d~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 147 DGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 32111111 1122222322 357889999999987543
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.8e-07 Score=81.42 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=69.7
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc-----cc--cCccccEEEecHHHHH
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV-----AS--SYGTFPLTVISSKEAA 463 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~-----~~--~~~~~p~~~i~~~~~~ 463 (773)
...|.+..+...+++|||+||+|+. |.+.+|..+++++||.++|++|+..... .. ....+|.++|+..+|+
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~--c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~ 106 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGG--CPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGA 106 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHH
Confidence 3679988877789999999999975 5699999999999999999999876321 11 3346999999999999
Q ss_pred HHHHHHhcCCCceE
Q 004113 464 EILAYINSKRNPVA 477 (773)
Q Consensus 464 ~l~~~~~~~~~~~~ 477 (773)
.|++++..+.+.++
T Consensus 107 ~l~~~l~~g~~v~~ 120 (122)
T cd04816 107 ALRRRLGAGETLEL 120 (122)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999988765443
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.7e-07 Score=80.21 Aligned_cols=76 Identities=30% Similarity=0.452 Sum_probs=62.1
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC------ccccccCccccEEEecHHHHHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS------RAVASSYGTFPLTVISSKEAAEI 465 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~------~~~~~~~~~~p~~~i~~~~~~~l 465 (773)
..|........+++|||+||+|+. |++.+|..+++++||.|+|+++... .........||+++|+.++|+.|
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg~--~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERGS--CSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEESTS--SCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred ccccccccCCccccceEEEEecCC--CCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 457777888899999999999965 5799999999999999999999211 23345567999999999999999
Q ss_pred HHHH
Q 004113 466 LAYI 469 (773)
Q Consensus 466 ~~~~ 469 (773)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6e-06 Score=98.45 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=58.9
Q ss_pred eeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCC-cEEEeccCCCCCCCCCC--CCcHHHHHHHHHHhCCcEEEE
Q 004113 238 AIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGV-DVLSLSLGGSAGIVRPL--TDDPIALGAFHAVEHGITVVC 314 (773)
Q Consensus 238 ~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~-dVIN~SlG~~~~~~~~~--~~~~~~~~~~~a~~~Gi~vV~ 314 (773)
..-+||+|+|..+-.- ......+..|+.+....-+ -+|-.||+....-...+ ..+.+......|..+||.+++
T Consensus 288 s~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 4568999999998772 2233333333333322211 34445666532100122 334555566778899999999
Q ss_pred ecCCCCCCCCC--------cccCCCcEEEEcc
Q 004113 315 SAGNDGPSSGS--------VVNFAPWIFTVAA 338 (773)
Q Consensus 315 aAGN~g~~~~~--------~~~~~p~vitVga 338 (773)
|+|.+|....+ .+..+|++.+||-
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999865543 2346799999997
|
|
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=79.85 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=70.3
Q ss_pred ccCCCCCCc--ccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc--cc----cccCccccEEEecHHHH
Q 004113 391 ARNCDLDSL--AGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR--AV----ASSYGTFPLTVISSKEA 462 (773)
Q Consensus 391 ~~~c~~~~~--~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~--~~----~~~~~~~p~~~i~~~~~ 462 (773)
...|.+... .+.++.|+|+|++||. |+|.+|..+++.+||.++|++|+... .. ......+|.++|+..+|
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~--C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGN--CTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 467988766 5678999999999965 68999999999999999999999862 11 12234789999999999
Q ss_pred HHHHHHHhcCCCceEE
Q 004113 463 AEILAYINSKRNPVAT 478 (773)
Q Consensus 463 ~~l~~~~~~~~~~~~~ 478 (773)
+.|++++.++.+.+++
T Consensus 122 ~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 122 MEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999888765554
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=77.70 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=66.3
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc----c--ccCccccEEEecHHHHHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV----A--SSYGTFPLTVISSKEAAEI 465 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~----~--~~~~~~p~~~i~~~~~~~l 465 (773)
..|....+.+.+++|+|+|++||. |+|.+|..+++.+||.++|++|+..... . .....||+++|+..+|+.|
T Consensus 31 ~gC~~~~~~~~~l~gkIaLV~RG~--CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 31 VLCSASDVPPGGLKGKAVVVMRGN--CTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CCCCccccCccccCCeEEEEECCC--cCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 569998888889999999999975 6899999999999999999999986311 1 1345789999999999999
Q ss_pred HHHHhc
Q 004113 466 LAYINS 471 (773)
Q Consensus 466 ~~~~~~ 471 (773)
+..+.+
T Consensus 109 ~~~l~~ 114 (120)
T cd02129 109 QQTFGD 114 (120)
T ss_pred HHHhcc
Confidence 988764
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.4e-06 Score=76.59 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=68.8
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc---c----c---ccCccccEEEecHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA---V----A---SSYGTFPLTVISSKE 461 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~---~----~---~~~~~~p~~~i~~~~ 461 (773)
..|.+.. ...+++|+|+|++||. |.|.+|..+++++||.++|++|+.... . . .....||+++|+..+
T Consensus 22 ~gC~~~~-~~~~~~g~I~Lv~RG~--C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 22 EACEELR-NIHDINGNIALIERGG--CSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred ccCCCCC-CccccCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 5688643 3567999999999965 689999999999999999999986531 1 1 123479999999999
Q ss_pred HHHHHHHHhcCCCceEEE
Q 004113 462 AAEILAYINSKRNPVATI 479 (773)
Q Consensus 462 ~~~l~~~~~~~~~~~~~i 479 (773)
|+.|++.+..+..+++.+
T Consensus 99 G~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 99 GYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHcCCceEEee
Confidence 999999999887776544
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=77.69 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=67.9
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc--c----ccCccccEEEecHHHHHH
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV--A----SSYGTFPLTVISSKEAAE 464 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~--~----~~~~~~p~~~i~~~~~~~ 464 (773)
...|.+.... .+++|||+||+|+. |.+.+|..++.++||.|+|++++..... . .....+|+++|+.+++..
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~--c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGT--CNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCC--CCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 4569887764 46999999999965 6789999999999999999999877421 1 123479999999999999
Q ss_pred HHHHHhcCCCceE
Q 004113 465 ILAYINSKRNPVA 477 (773)
Q Consensus 465 l~~~~~~~~~~~~ 477 (773)
|+.|++.+...++
T Consensus 104 l~~~l~~g~~v~v 116 (118)
T cd04818 104 LKAALAAGGTVTV 116 (118)
T ss_pred HHHHHhcCCcEEE
Confidence 9999998765444
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-06 Score=78.17 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=68.1
Q ss_pred ccCCCCCC--cccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc-c---c----ccCccccEEEecHH
Q 004113 391 ARNCDLDS--LAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-V---A----SSYGTFPLTVISSK 460 (773)
Q Consensus 391 ~~~c~~~~--~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~---~----~~~~~~p~~~i~~~ 460 (773)
...|.... +...+++|||+||+|+. |.+.+|..+++.+||.|+|++++.... . . .....+|++.|+.+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~--~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGG--CSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCC--cCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 34587776 67788999999999965 679999999999999999999987631 1 1 13457999999999
Q ss_pred HHHHHHHHHhcCCCce
Q 004113 461 EAAEILAYINSKRNPV 476 (773)
Q Consensus 461 ~~~~l~~~~~~~~~~~ 476 (773)
++..|+.|+.++.+.+
T Consensus 108 ~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 108 DGEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHHhcCCceE
Confidence 9999999998765433
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-06 Score=78.30 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=59.9
Q ss_pred CcccccccceEEEEecCCCC---CchhhhhcccccCCceEEEEEeCC--Cccc---ccc---CccccEEEecHHHHHHHH
Q 004113 398 SLAGALVKGKIVLCDNDDDM---GSVVDKKDGVKSLGGVGVIVIDDQ--SRAV---ASS---YGTFPLTVISSKEAAEIL 466 (773)
Q Consensus 398 ~~~~~~~~gki~l~~~~~~~---~~~~~k~~~~~~~Ga~g~i~~~~~--~~~~---~~~---~~~~p~~~i~~~~~~~l~ 466 (773)
++.+.+++|||+|++|+.+. ..|.+|..+++++||.|+|+||+. .... ..+ ..+||++.|++.+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 34466899999999997644 229999999999999999999998 3211 111 458999999999999999
Q ss_pred HHHhcC
Q 004113 467 AYINSK 472 (773)
Q Consensus 467 ~~~~~~ 472 (773)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 987543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.1e-06 Score=76.10 Aligned_cols=83 Identities=31% Similarity=0.448 Sum_probs=66.1
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc------cc--------ccCccccEEEe
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA------VA--------SSYGTFPLTVI 457 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~------~~--------~~~~~~p~~~i 457 (773)
..|.+... +.+++|||+|++||. |+|.+|..+++++||.++|++|+.... .. .....||+++|
T Consensus 28 ~gC~~~~~-~~~~~gkIaLv~RG~--C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 28 RACSEITN-AEEVKGKIAIMERGD--CMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hcccCCCC-ccccCceEEEEECCC--CcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 56886543 667899999999965 679999999999999999999876531 10 12357999999
Q ss_pred cHHHHHHHHHHHhcCCCceE
Q 004113 458 SSKEAAEILAYINSKRNPVA 477 (773)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~ 477 (773)
+..+|+.|++.+......++
T Consensus 105 ~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EHHHHHHHHHHHHhCCceEE
Confidence 99999999999987655443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.8e-06 Score=75.55 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=66.9
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC-ccc---c--ccCccccEEEecHHHHHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS-RAV---A--SSYGTFPLTVISSKEAAEI 465 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~-~~~---~--~~~~~~p~~~i~~~~~~~l 465 (773)
..|.+..+ +.+++|||+|++|+. |.+.+|..+++++||.++|++|+.. ... . .....+|.+.|+.++|+.|
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~--c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L 108 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGE--CPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKAL 108 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHH
Confidence 35876554 457999999999965 5689999999999999999999883 211 1 1245799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004113 466 LAYINSKRNPVAT 478 (773)
Q Consensus 466 ~~~~~~~~~~~~~ 478 (773)
++.+.++...+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd02130 109 VAALANGGEVSAN 121 (122)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988765543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=75.54 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=65.5
Q ss_pred cCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc--------ccCccccEEEecHHHHH
Q 004113 392 RNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA--------SSYGTFPLTVISSKEAA 463 (773)
Q Consensus 392 ~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~--------~~~~~~p~~~i~~~~~~ 463 (773)
+.|.+.. .+++|+|+|++||. |+|.+|..+++++||.++|++|+...... .....||+++|+..+|+
T Consensus 49 ~gC~~~~---~~~~g~IvLV~RG~--C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 49 DCCSPST---SKLSGSIALVERGE--CAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred cccCCCC---cccCCeEEEEECCC--CCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 5688754 47899999999965 67999999999999999999998763211 11357999999999999
Q ss_pred HHHHHHhcCCCceE
Q 004113 464 EILAYINSKRNPVA 477 (773)
Q Consensus 464 ~l~~~~~~~~~~~~ 477 (773)
.|++.+.++...++
T Consensus 124 ~L~~~l~~g~~Vtv 137 (139)
T cd02132 124 ALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHcCCcEEE
Confidence 99999988765443
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.4e-05 Score=73.75 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=65.0
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc---cccCccccEEEecHHHHHHHHH
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV---ASSYGTFPLTVISSKEAAEILA 467 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~---~~~~~~~p~~~i~~~~~~~l~~ 467 (773)
...|.+...+..+++|+|+|++|++ |.+.+|..+++++||.++|++|+..... ..+...+|.+.+ ..+|+.|++
T Consensus 41 ~~gC~~~~~~~~~~~g~IaLv~rg~--c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 41 DDACQPLPDDTPDLSGYIVLVRRGT--CTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred cccCcCCCcccccccCeEEEEECCC--CCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 4679876555568999999999976 7899999999999999999999876322 122334566666 999999999
Q ss_pred HHhcCCCceE
Q 004113 468 YINSKRNPVA 477 (773)
Q Consensus 468 ~~~~~~~~~~ 477 (773)
.+..+...++
T Consensus 118 ~l~~G~~vtv 127 (129)
T cd02124 118 ALAAGSNVTV 127 (129)
T ss_pred HHhcCCeEEE
Confidence 9987755443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=73.15 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=66.4
Q ss_pred cCCCCCCcc--cc----cccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc-------------ccCccc
Q 004113 392 RNCDLDSLA--GA----LVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA-------------SSYGTF 452 (773)
Q Consensus 392 ~~c~~~~~~--~~----~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~-------------~~~~~~ 452 (773)
..|.+.... +. ...++|+|++||. |.|.+|..+++++||.++|++|+..+... .....|
T Consensus 23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~--C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGG--CFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccCCCCcccccccccccCCCceEEEEECCC--cCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 468765432 22 3788999999965 78999999999999999999998764221 123369
Q ss_pred cEEEecHHHHHHHHHHHhcCCCceEE
Q 004113 453 PLTVISSKEAAEILAYINSKRNPVAT 478 (773)
Q Consensus 453 p~~~i~~~~~~~l~~~~~~~~~~~~~ 478 (773)
|+++|+..+|+.|+..+.++...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999987765543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=72.18 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=62.9
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc-c-------cccCccccEEEecHHHH
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-V-------ASSYGTFPLTVISSKEA 462 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~-------~~~~~~~p~~~i~~~~~ 462 (773)
...|.+. +..+++|+|+|++||+ |+|.+|..+++.+||.++|++|+.... . ......+|+++++..++
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~--CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGG--CGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCC--CCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 3568765 5688999999999965 689999999999999999999977631 1 12234799999999999
Q ss_pred HHHHHHHhc
Q 004113 463 AEILAYINS 471 (773)
Q Consensus 463 ~~l~~~~~~ 471 (773)
+.|+.++..
T Consensus 103 ~~L~~l~~~ 111 (117)
T cd04813 103 HLLSSLLPK 111 (117)
T ss_pred HHHHHhccc
Confidence 999987654
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.1e-05 Score=70.84 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc---
Q 004113 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA--- 446 (773)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~--- 446 (773)
....++++.+.+ ....+...+++|||++++++.+..++.+|..++.++||.|+|++|+......
T Consensus 22 ~~~~~lV~~g~G-------------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~ 88 (127)
T cd04819 22 EAKGEPVDAGYG-------------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATG 88 (127)
T ss_pred CeeEEEEEeCCC-------------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccc
Confidence 456777876652 2233445679999999999775447889999999999999999987764321
Q ss_pred ------ccCccccEEEecHHHHHHHHHHHhcCC
Q 004113 447 ------SSYGTFPLTVISSKEAAEILAYINSKR 473 (773)
Q Consensus 447 ------~~~~~~p~~~i~~~~~~~l~~~~~~~~ 473 (773)
.....+|++.|+.+|++.|.+.++.+.
T Consensus 89 ~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 89 DEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999988753
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.87 E-value=4e-05 Score=73.16 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=66.4
Q ss_pred cCCCCCCccc---ccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc---c-----cCccccEEEecHH
Q 004113 392 RNCDLDSLAG---ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA---S-----SYGTFPLTVISSK 460 (773)
Q Consensus 392 ~~c~~~~~~~---~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~---~-----~~~~~p~~~i~~~ 460 (773)
..|.+....+ .++.|+|+|++||+ |+|.+|..+++++||.++|++|+..+... . ....||+++|+..
T Consensus 51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~--CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 51 NACSPIENPPLNSNASGSFIVLIRRGN--CSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred ccCCCCcccccccccCCCeEEEEECCC--CCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 5688766544 78999999999965 68999999999999999999998763221 1 2458999999999
Q ss_pred HHHHHHHHHhcCCC
Q 004113 461 EAAEILAYINSKRN 474 (773)
Q Consensus 461 ~~~~l~~~~~~~~~ 474 (773)
+|+.|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999887644
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0098 Score=55.49 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=58.0
Q ss_pred ccccccceEEEEecCCCC----Cchhhh-------hcccccCCceEEEEEeCCCc-------ccc---ccCccccEEEec
Q 004113 400 AGALVKGKIVLCDNDDDM----GSVVDK-------KDGVKSLGGVGVIVIDDQSR-------AVA---SSYGTFPLTVIS 458 (773)
Q Consensus 400 ~~~~~~gki~l~~~~~~~----~~~~~k-------~~~~~~~Ga~g~i~~~~~~~-------~~~---~~~~~~p~~~i~ 458 (773)
...+++|||+++.++.|. ..+..| ...+.++||.++|++|.... +.. .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 356899999999997651 156666 68899999999999996421 111 223469999999
Q ss_pred HHHHHHHHHHHhcCCCce
Q 004113 459 SKEAAEILAYINSKRNPV 476 (773)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~ 476 (773)
.+++..|.+.+..+....
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 999999999988765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.008 Score=58.53 Aligned_cols=69 Identities=28% Similarity=0.433 Sum_probs=54.6
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc---------------c-----------------c-
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV---------------A-----------------S- 447 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~---------------~-----------------~- 447 (773)
..+++|||+|++++. +.+.+|..+|+.+||.|+|+|++..+.. . .
T Consensus 51 gv~v~GkIvLvr~G~--~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~ 128 (183)
T cd02128 51 GVSVNGSVVLVRAGK--ISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS 128 (183)
T ss_pred CCCCCCeEEEEECCC--CCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence 468999999999975 5689999999999999999999842100 0 0
Q ss_pred ---cCccccEEEecHHHHHHHHHHHhc
Q 004113 448 ---SYGTFPLTVISSKEAAEILAYINS 471 (773)
Q Consensus 448 ---~~~~~p~~~i~~~~~~~l~~~~~~ 471 (773)
.--.||+.-|+..++..|+..+.-
T Consensus 129 ~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 129 QSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012589999999999999997754
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.23 Score=43.73 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=61.1
Q ss_pred ccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEECCceeEEE
Q 004113 682 EGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKVRS 761 (773)
Q Consensus 682 ~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~~~~~~v~~ 761 (773)
+..+.+++++|.+ ..+..|++.......--++++|..-.+ ++|++.++.|+|.... ..+.+.+.|...-.+..+.+
T Consensus 20 ~~~~~~v~l~N~s-~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 20 QTYSRTVTLTNTS-SIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PLGDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CEEEEEEEEEECC-CCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CCceEEEEEEEEECCeEEEE
Confidence 3777889999999 889999987654334556777776656 6799999999999642 33456788887765568888
Q ss_pred EEEEEe
Q 004113 762 LFVVSS 767 (773)
Q Consensus 762 P~~~~~ 767 (773)
|+-+..
T Consensus 96 ~v~a~~ 101 (102)
T PF14874_consen 96 PVKAEV 101 (102)
T ss_pred EEEEEE
Confidence 876653
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.071 Score=44.57 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=38.1
Q ss_pred CccEEEEEEEEeccCCCC-eEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 681 KEGRTISRTVTNVAGNNE-TIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
|+..+++.+|+|.+ ..+ ...++++..|.|-++...|..+.-.++||+++++++|..+.
T Consensus 4 G~~~~~~~tv~N~g-~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTG-TAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--S-SS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECC-CCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 45788999999998 644 56888899999999888888776557899999999999874
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.045 Score=51.21 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=51.2
Q ss_pred CCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCC----------------CchhhhhcccccCCce
Q 004113 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM----------------GSVVDKKDGVKSLGGV 433 (773)
Q Consensus 370 ~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~----------------~~~~~k~~~~~~~Ga~ 433 (773)
....++|+.+.+- ....|....+...|++|||+++.++.+. ..+..|..++.++||.
T Consensus 19 ~~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (142)
T cd04814 19 IKDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAA 91 (142)
T ss_pred ccceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCc
Confidence 3467778776531 1245888888889999999999987651 1466799999999999
Q ss_pred EEEEEeCCC
Q 004113 434 GVIVIDDQS 442 (773)
Q Consensus 434 g~i~~~~~~ 442 (773)
|+|++++..
T Consensus 92 gvIii~~~~ 100 (142)
T cd04814 92 GVLIVHELA 100 (142)
T ss_pred EEEEEeCCC
Confidence 999999876
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.088 Score=49.87 Aligned_cols=88 Identities=23% Similarity=0.309 Sum_probs=59.3
Q ss_pred ceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCC----------------CCchhhhhcccccCCceEE
Q 004113 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDD----------------MGSVVDKKDGVKSLGGVGV 435 (773)
Q Consensus 372 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~----------------~~~~~~k~~~~~~~Ga~g~ 435 (773)
.-++||.+.+. ....|....+...+++|||+|+.++.. .+.+..|..++...||.|+
T Consensus 21 tg~lVfvGyGi-------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 21 TAPVVFAGYGI-------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred eEeEEEecCCc-------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 45677766431 124577777778899999999987631 1567789999999999999
Q ss_pred EEEeCCCccccccCcccc------EEEecHHHHHHHHH
Q 004113 436 IVIDDQSRAVASSYGTFP------LTVISSKEAAEILA 467 (773)
Q Consensus 436 i~~~~~~~~~~~~~~~~p------~~~i~~~~~~~l~~ 467 (773)
|++++..... .....+| .++++....+.+..
T Consensus 94 Iv~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 94 IVVNGPNSHS-GDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred EEEeCCcccC-cccccccccCccceEEechHHHHHHhh
Confidence 9999876332 1111111 55666665555554
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.037 Score=51.47 Aligned_cols=65 Identities=26% Similarity=0.315 Sum_probs=49.7
Q ss_pred CceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCC----------CchhhhhcccccCCceEEEEEeC
Q 004113 371 PVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDM----------GSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 371 ~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~----------~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
..-++|+.+.+. ....|....+...+++|||+|+.++.+. ..+..|..++.++||.|+|++++
T Consensus 22 v~gelVfvGyG~-------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 22 VEAPLVFVGYGL-------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred ceEeEEEecCCc-------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 345666665431 1245777777788999999999997653 24678999999999999999998
Q ss_pred CC
Q 004113 441 QS 442 (773)
Q Consensus 441 ~~ 442 (773)
..
T Consensus 95 ~~ 96 (137)
T cd04820 95 PR 96 (137)
T ss_pred Cc
Confidence 66
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.11 Score=56.67 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=62.6
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc--------ccccCccccEEEecHHHHHHHHHHHhcC
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA--------VASSYGTFPLTVISSKEAAEILAYINSK 472 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~--------~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 472 (773)
+..+++++++..||. |.|.+|...++++||.+++++|+..+. ....+..||+++++.++++.+.....++
T Consensus 91 ~~kl~~~~~~v~RGn--C~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGN--CSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CccccceeEEEeccc--ceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 567899999999954 789999999999999999999995521 2234568999999999999999866666
Q ss_pred CCceEEEe
Q 004113 473 RNPVATIL 480 (773)
Q Consensus 473 ~~~~~~i~ 480 (773)
.+..+.+.
T Consensus 169 ~~V~~~lY 176 (541)
T KOG2442|consen 169 DNVELALY 176 (541)
T ss_pred CeEEEEEE
Confidence 65544443
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=40.36 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=38.9
Q ss_pred EEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 684 RTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 684 ~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
-..+++++|.+ ..+.+|+++++.++|+++......+++ ++||+.++.|.+..+.
T Consensus 33 N~Y~lkl~Nkt-~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 33 NQYTLKLTNKT-NQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEE-S-SS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEECC-CCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 35789999999 999999999999889999665578888 6799999999999974
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.6 Score=39.81 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=54.3
Q ss_pred cCCCccEEEEEEEEeccCCCCeEEEEEEeCC----CC--------------c------EEEEecCeEEEccCCcEEEEEE
Q 004113 678 FDGKEGRTISRTVTNVAGNNETIYTVAVDAP----QG--------------L------NVKVIPEELQFTKSGQKLSYQV 733 (773)
Q Consensus 678 ~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~~----~g--------------~------~v~v~p~~~~~~~~~~~~~~~v 733 (773)
+..++++++.++|+|.+ +.+.+|.+.+... .| + -+++ |..+++ +++|++++++
T Consensus 23 ~~P~q~~~l~v~i~N~s-~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~ 99 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNS-DKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTF 99 (121)
T ss_pred eCCCCEEEEEEEEEeCC-CCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEE
Confidence 44566899999999999 8999999876431 11 0 0222 455777 6899999999
Q ss_pred EEEeccCCCCCcEEEEEEEEC
Q 004113 734 TFTSALSPLKEDVFGSITWSN 754 (773)
Q Consensus 734 t~~~~~~~~~~~~~G~l~~~~ 754 (773)
+++.+...-.+.+-|.|.+.+
T Consensus 100 ~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 100 TIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred EEEcCCCCcCCEEEeeEEEEe
Confidence 999986656677778888764
|
|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.22 Score=50.31 Aligned_cols=40 Identities=35% Similarity=0.372 Sum_probs=35.0
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS 442 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~ 442 (773)
..+++|||+|++++. +.+..|..+|+.+||.|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~--~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGG--IFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCC--ccHHHHHHHHHHcCCEEEEEEeCch
Confidence 568999999999865 3567899999999999999999875
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.19 Score=47.05 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=35.3
Q ss_pred ccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC
Q 004113 402 ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS 442 (773)
Q Consensus 402 ~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~ 442 (773)
-+++|||+|++.|. ..+..|..+|+..||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~--~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQ--APLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccC--cchHHHHHHHHHCCCeEEEEecChh
Confidence 57999999999976 5699999999999999999999865
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.48 E-value=7 Score=43.24 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=56.0
Q ss_pred CCccEEEEEEEEeccCCCC-eEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc-CCCCCcEEEEEEEE
Q 004113 680 GKEGRTISRTVTNVAGNNE-TIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL-SPLKEDVFGSITWS 753 (773)
Q Consensus 680 ~~~~~~~~~tvtn~~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~~G~l~~~ 753 (773)
.|+..+....+.|.| +.+ ..-++++..|+|-++.|+|.++--.+++|.+++++|++++. ..++.| +=+|+-+
T Consensus 395 aGee~~i~i~I~NsG-na~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY-~i~i~~k 468 (513)
T COG1470 395 AGEEKTIRISIENSG-NAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY-RITITAK 468 (513)
T ss_pred CCccceEEEEEEecC-CCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE-EEEEEEe
Confidence 356888999999999 655 45689999999999999999766668899999999999974 444444 4444443
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.37 E-value=1.2 Score=41.50 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=56.4
Q ss_pred ccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc------------ccccCccccEEEec
Q 004113 391 ARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA------------VASSYGTFPLTVIS 458 (773)
Q Consensus 391 ~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~------------~~~~~~~~p~~~i~ 458 (773)
..+|..-. +..+..+.+++++||+ |+|..|..++.++||..+|+.++.... ...+...+|++++-
T Consensus 74 p~aC~elr-N~~f~~d~vaL~eRGe--CSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 74 PHACEELR-NEIFAPDSVALMERGE--CSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred hhHHHHHh-hcccCCCcEEEEecCC--ceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 34566432 3456778999999965 789999999999999999999876521 12234578999988
Q ss_pred HHHHHHHHHHHhc
Q 004113 459 SKEAAEILAYINS 471 (773)
Q Consensus 459 ~~~~~~l~~~~~~ 471 (773)
..+|..++.-+..
T Consensus 151 g~~Gy~ir~sL~r 163 (193)
T KOG3920|consen 151 GVTGYYIRVSLKR 163 (193)
T ss_pred ccceEEEehhHHH
Confidence 8887655554443
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.51 E-value=2.9 Score=44.89 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=59.2
Q ss_pred cCCCCCCcc---cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc------cccCccccEEEecHHHH
Q 004113 392 RNCDLDSLA---GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV------ASSYGTFPLTVISSKEA 462 (773)
Q Consensus 392 ~~c~~~~~~---~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~------~~~~~~~p~~~i~~~~~ 462 (773)
.+|++.... ...-...++++.|++ |+|.+|..+++.+|..++|+||+..... ......++.++++..-|
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~--CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGG--CSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccC--CchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 346654332 344567899999976 7899999999999999999999876331 23445788999999999
Q ss_pred HHHHHHHhc
Q 004113 463 AEILAYINS 471 (773)
Q Consensus 463 ~~l~~~~~~ 471 (773)
+.|..|...
T Consensus 141 e~l~~~~~~ 149 (348)
T KOG4628|consen 141 ELLSSYAGR 149 (348)
T ss_pred HHHHHhhcc
Confidence 999887543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 773 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-120 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 6e-90 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 9e-16 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 3e-09 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 7e-08 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 2e-06 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 4e-06 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 6e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 1e-05 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 2e-05 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 2e-05 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 2e-05 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 2e-05 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 2e-05 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 4e-05 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 5e-05 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 5e-05 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 6e-05 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 7e-05 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 1e-04 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 1e-04 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 3e-04 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 3e-04 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 3e-04 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 3e-04 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 4e-04 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 4e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 4e-04 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 4e-04 | ||
| 1r6v_A | 671 | Crystal Structure Of Fervidolysin From Fervidobacte | 5e-04 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 5e-04 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 5e-04 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 6e-04 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 6e-04 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 7e-04 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium Pennivorans, A Keratinolytic Enzyme Related To Subtilisin Length = 671 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 616 bits (1590), Expect = 0.0
Identities = 259/663 (39%), Positives = 369/663 (55%), Gaps = 45/663 (6%)
Query: 108 TTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTR 167
TTRSWDFL P ES+ ++G+LDTG+WPES SF+D+ P P +
Sbjct: 1 TTRSWDFLG---------FPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPK 51
Query: 168 WKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVA-NGQSPRDMVGHGTHVASTAAGQAVQ 226
WKGTC N+ F CNRKIIGAR Y I + + PRD GHGTH ASTAAG V
Sbjct: 52 WKGTCETSNN---FRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVS 108
Query: 227 GASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGS 286
A+ YGL GTA GG P +RIA Y+VC + GC+ ++ILAA+DDAIADGVD++SLS+GG+
Sbjct: 109 QANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVGGA 167
Query: 287 AGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFE 346
R D IA+G+FHAVE GI SAGN GP+ + + +PW+ +VAAST+DR F
Sbjct: 168 NP--RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFV 225
Query: 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKG 406
+ + +G + +G SIN + + YPL+ + +++ +R C S+ L+KG
Sbjct: 226 TQVQIGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKG 282
Query: 407 KIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEIL 466
KIV+C+ KSL G +++ +R A SY P +V+ + L
Sbjct: 283 KIVVCEASFGPHEF------FKSLDGAAGVLMTSNTRDYADSY-PLPSSVLDPNDLLATL 335
Query: 467 AYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWM 526
YI S R+P ATI + ++ AP + FS+RGP+ T++++KPDI+ PGV ILAAW
Sbjct: 336 RYIYSIRSPGATIFKSTTILN-ASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP 394
Query: 527 GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTN 586
FN+ISGTSMSCPHI+G+ +K NPT+SP+ IKSA+MTTA+ N
Sbjct: 395 SVAPVGGIRRNTL--FNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 452
Query: 587 NLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMI 646
+ +G+G V+ +++PGLVY+ DY+ FLC GY+ ++ I
Sbjct: 453 --------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRI 504
Query: 647 ATTIPKDFACPKDSGVDSISNINYPSIAVSSFDGKEG-RTISRTVTNVAGNNETIYTVAV 705
AC + + ++NYPS +S + + +RT+T+VA T Y +
Sbjct: 505 T---GDYSACTSGN-TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQAST-YRAMI 559
Query: 706 DAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWSNGKYKVRSLFVV 765
APQGL + V P L F G + S+ +T ++ V S+ WS+G + VRS +
Sbjct: 560 SAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIK--GFVVSASLVWSDGVHYVRSPITI 617
Query: 766 SSK 768
+S
Sbjct: 618 TSL 620
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 615 bits (1586), Expect = 0.0
Identities = 243/674 (36%), Positives = 340/674 (50%), Gaps = 44/674 (6%)
Query: 108 TTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTR 167
TT + DFLK+ S + D I+ +LD+G+WPES SF D M IP R
Sbjct: 1 TTHTSDFLKLNP-------SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKR 53
Query: 168 WKGTCNAGNDNVSFSCNRKIIGARFYD-----IEDDVVANGQSPRDMVGHGTHVASTAAG 222
WKG C G + CNRK+IGA +++ + V S RD GHGTH AS AG
Sbjct: 54 WKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAG 113
Query: 223 QAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLS 282
+G S++G A GTA G +P +R+AVY+ E G S+++AA D A+ADGVD++S+S
Sbjct: 114 NFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISIS 172
Query: 283 LGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTID 342
G PL +D I++ +F A+ G+ V SAGN GP GS+ N +PWI VA+ D
Sbjct: 173 YGYRFI---PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTD 229
Query: 343 RDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGA 402
R F + LG I+G S+ + P+IY K+ + E ++ +
Sbjct: 230 RTFAGTLTLGNGLKIRGWSLFPARAFVRD-SPVIYNKTLSDCSSEELLSQVEN------- 281
Query: 403 LVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEA 462
+ IV+CD++ G D+ + I I + S+ P V++ KE
Sbjct: 282 -PENTIVICDDN---GDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEG 337
Query: 463 AEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNIL 522
+++ Y+ + P ATI + KPAP +A SARGPS I KPDI APGV IL
Sbjct: 338 KQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLIL 397
Query: 523 AAWMGN--DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMT 580
AA+ N T + + SGTSM+ PH +G+ A +K +P +SPS I+SA+MT
Sbjct: 398 AAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMT 457
Query: 581 TATQTNNLRAPIT-TNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYD 639
TA +N R PI +++ AATP D GAG V +L PGLVY+ T DY+N LC +
Sbjct: 458 TADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFT 517
Query: 640 LSKIKMIATTIPKDFACPKDSGVDSISNINYPS-IAVSSFDGKEG---RTISRTVTNVAG 695
+ K I C S +++NYPS IA+ S +G + RTVTNV
Sbjct: 518 EEQFKTI-ARSSASHNCSNPS-----ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGK 571
Query: 696 NNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITW--S 753
T Y + AP+ + V P+ L F +K SY +T + GSITW
Sbjct: 572 GAAT-YKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQ 630
Query: 754 NGKYKVRSLFVVSS 767
NG + VRS V S
Sbjct: 631 NGNHSVRSPIVTSP 644
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 434 bits (1118), Expect = e-140
Identities = 121/620 (19%), Positives = 206/620 (33%), Gaps = 65/620 (10%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFS----CNRKIIGARFY 193
+ T++ ++D G E++ D + K + N K+ Y
Sbjct: 17 AGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDY 76
Query: 194 DIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVC 253
+ HGTHV+ +G A G P +++ + RV
Sbjct: 77 -------SKDGKTAVDQEHGTHVSGILSGNAP----SETKEPYRLEGAMPEAQLLLMRVE 125
Query: 254 SPEY-GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITV 312
N A DAI G V+++S G +A D +A G+++
Sbjct: 126 IVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYAN-LPDETKKAFDYAKSKGVSI 184
Query: 313 VCSAGNDGPS---SGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQK 369
V SAGND + + P V + +K + + Q+
Sbjct: 185 VTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQ 244
Query: 370 SPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKS 429
P++ + + A + A N VKGKI L + D DK K
Sbjct: 245 DKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGD--IDFKDKIAKAKK 302
Query: 430 LGGVGVIVIDDQSRAVA---SSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVT 486
G VGV++ D+Q + + P IS K+ + T T V
Sbjct: 303 AGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKT----ITFNATPKVL 358
Query: 487 KYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVIS 546
++ FS+ G + +KPDI APG +IL++ N + +S
Sbjct: 359 PTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANNK------------YAKLS 404
Query: 547 GTSMSCPHISGVVAAIKHQNPTFSP--------SEIKSAVMTTATQTNNLRAPITTNSGA 598
GTSMS P ++G++ ++ Q T P K +M++AT + + A
Sbjct: 405 GTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYD------EDEKA 458
Query: 599 AATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPK 658
+P GAG V + + T D + + K + + + P+
Sbjct: 459 YFSPRQQGAGAVDAKKASAATMYV--TDKDNTSSKVHLNNVSDKFE-VTVNVHNKSDKPQ 515
Query: 659 DSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPE 718
+ + + + K S + N+ TV +DA + +
Sbjct: 516 ELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFS-----KD 570
Query: 719 ELQFTKSGQKLSYQVTFTSA 738
L K+G L V F
Sbjct: 571 LLAQMKNGYFLEGFVRFKQD 590
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 4e-27
Identities = 73/405 (18%), Positives = 137/405 (33%), Gaps = 63/405 (15%)
Query: 193 YDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRV 252
+ N P + HGTHVA T A A G+ + + I + +V
Sbjct: 48 TNNSGT--GNWYQPGNNNAHGTHVAGTIAAIA-NNEGVVGVM------PNQNANIHIVKV 98
Query: 253 CSPEYGCTGSNILAAFDDAI-ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGIT 311
+ S+++AA D + + G +V+++SLGGS + + +G+
Sbjct: 99 FNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGST--TTERNALN----THYNNGVL 152
Query: 312 VVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFES--------DIVLGGNKVI-----K 358
++ +AGN G SS S + +VAA + D + +I G ++
Sbjct: 153 LIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVG 212
Query: 359 GESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMG 418
+ + + + + + A S GAL + +
Sbjct: 213 EGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNM 272
Query: 419 SVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVAT 478
+ G + ++A ++ ++ S A L
Sbjct: 273 ANKICLVERVGNQG-SSYPEINSTKACKTAGAKG--IIVYSNSALPGLQNPFLVDANSDI 329
Query: 479 ILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKE 538
+P+VSV A +A + G S ++ G
Sbjct: 330 TVPSVSVD---RATGLALKAKLGQS--------TTVSNQGNQD----------------- 361
Query: 539 PPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583
+ +GTSM+ PH+SGV + +P S S++++A+ TA
Sbjct: 362 ---YEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATAD 403
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 68/308 (22%), Positives = 117/308 (37%), Gaps = 66/308 (21%)
Query: 52 AQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHAL-----------SKKPGVVSIFP 100
+ +L + I +Y A ++ ++ + ++ GV I
Sbjct: 48 KEKAVEILDFLGAKIKYNYHI-IPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQE 106
Query: 101 DPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKD 160
D V+++ + + V+ ++ + + S IGI+DTG+
Sbjct: 107 DYVVKVAVE-TEGLDESAAQVMATNMWNLGYDG----SGITIGIIDTGIDASHPDLQG-- 159
Query: 161 MGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTA 220
K+IG D V +P D GHGTHVAS A
Sbjct: 160 -------------------------KVIGWV------DFVNGKTTPYDDNGHGTHVASIA 188
Query: 221 AGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA----AFDDAIADGV 276
AG GA+ G G A PG+++ +V + + + S+I+ A + G+
Sbjct: 189 AG---TGAASNGKYKGMA----PGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGI 241
Query: 277 DVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFA--PWIF 334
V++LSLG S D ++ +A + G+ VV +AGN GP+ +V + A +
Sbjct: 242 KVINLSLGSSQS---SDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVI 298
Query: 335 TVAASTID 342
TV A
Sbjct: 299 TVGAVDKY 306
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 2e-21
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
I FS+RGP+ N LKP++ APG I+AA + P + GT+M+
Sbjct: 308 VITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPIN---DYYTAAPGTAMAT 362
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVST 612
PH++G+ A + +P+++P ++K+A++ TA +GAG V+
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA----------DIVKPDEIADIAYGAGRVNA 412
Query: 613 TASLQPGLVYETTTLDYLN 631
+ + T Y++
Sbjct: 413 YKAAYYDNYAKLTFTGYVS 431
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 3e-23
Identities = 42/251 (16%), Positives = 89/251 (35%), Gaps = 30/251 (11%)
Query: 130 SLNSQDQESDTIIGILDTGVWPESESFN---DKDMGPIPTRWKGTCNAGNDNVSFSCNRK 186
LNS ++ I D ++P ++ + D + + + + +
Sbjct: 190 MLNSYEKVYGDIKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDDF 249
Query: 187 IIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSR 246
+ + ++ D+ + HGTHV+S A+G ++ G +P ++
Sbjct: 250 L--SISVNVHDEG-NVLEVVGMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAK 297
Query: 247 IAVYRVCSPEYGC--TGSNILAAFDDAI-----ADGVDVLSLSLGGSAGIVRPLTDDPIA 299
I + G TG+ ++ A + +DV+++S G A +
Sbjct: 298 IVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANW--SNSGRIGE 355
Query: 300 LGAFHAVEHGITVVCSAGNDGPSSGSVVNFA----PWIFTVAASTIDRDFESDIVLGGNK 355
L ++G+ V SAGN GP+ +V P + V A + +
Sbjct: 356 LMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAY--VSPQMMEAEYAMRE 413
Query: 356 VIKGESINFSN 366
+ G +++
Sbjct: 414 KLPGNVYTWTS 424
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 94.9 bits (235), Expect = 5e-20
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 28/143 (19%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
+ +++R P + APG I + + +++GTSM+ P
Sbjct: 419 VYTWTSRDPCIDGG--QGVTVCAPGGAIASVPQFTMSK----------SQLMNGTSMAAP 466
Query: 554 HISGVVA----AIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGE 609
H++G VA +K QN +SP IK A+ TAT+ P+ G G
Sbjct: 467 HVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------VDPFAQGHGL 514
Query: 610 VSTTASLQPGLVYETTTLDYLNF 632
++ + + + + + L F
Sbjct: 515 LNVEKAFEHLTEHRQSKDNMLRF 537
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 8e-23
Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 25/218 (11%)
Query: 136 QESDTIIGILDTGVWPESESFNDKDMGPIPTRW----KGTCNAGNDNVSFSCNRKIIGAR 191
+ I I+D F ++ + W + ++ + G
Sbjct: 47 GDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKE 106
Query: 192 FYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYR 251
+ + V+ + + + H HV ST GQ +G+A P R+
Sbjct: 107 KEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEHSP--VFGIA--------PNCRVINMP 156
Query: 252 VCSPEYG-----CTGSNILAAFDDAIADGVDVLSLSLGGSA--GIVRPLTDDPIALGAFH 304
+ G + N+ A D A+ G +++ + + I
Sbjct: 157 QDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK----K 212
Query: 305 AVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTID 342
++ + +V GN+ S + P V A+ +D
Sbjct: 213 CQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD 250
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 29/129 (22%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+FS G + K I APG IL A + ++GTSM+
Sbjct: 252 TPCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEEPVR-----------LTGTSMAA 295
Query: 553 PHISGVVAAIK----HQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608
P ++G+ A + Q +++A++ TA + P G
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAI---------PCDPEVVEEPERCLRG 346
Query: 609 EVSTTASLQ 617
V+ +++
Sbjct: 347 FVNIPGAMK 355
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 19/149 (12%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
VA D GHGTHVA T A G+A P + +V +
Sbjct: 49 SFVAGEAYNTDGNGHGTHVAGTVAALD-NTTGVLGVA--------PSVSLYAVKVLNSSG 99
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
+ S I++ + A +G+DV+++SLGG++G + +A G+ VV +AG
Sbjct: 100 SGSYSGIVSGIEWATTNGMDVINMSLGGASGS--TAMKQAVD----NAYARGVVVVAAAG 153
Query: 318 NDGPSSGSVVNF----APWIFTVAASTID 342
N G S + + V A +
Sbjct: 154 NSGNSGSTNTIGYPAKYDSVIAVGAVDSN 182
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 34/125 (27%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
A FS+ G + ++ APG + + + N ++GTSM+
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTYPTNTYAT------------LNGTSMAS 223
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVST 612
PH++G A I ++P S S++++ + +TAT + + +G G ++
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATY--------------LGSSFYYGKGLINV 269
Query: 613 TASLQ 617
A+ Q
Sbjct: 270 EAAAQ 274
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 2e-21
Identities = 65/320 (20%), Positives = 92/320 (28%), Gaps = 71/320 (22%)
Query: 50 DHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTT 109
D A+ + I+ +K + A L K PGV + D L
Sbjct: 10 DKAKFNPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGK 68
Query: 110 RSWDFLK-------IQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMG 162
SW I + PS + S + +LDTGV +
Sbjct: 69 PSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA---- 124
Query: 163 PIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAG 222
+ V + D GHGTHV T A
Sbjct: 125 ----------------------NIAWCVST--LRGKVSTKLRDCADQNGHGTHVIGTIAA 160
Query: 223 QAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD-------- 274
G G +PG +I RV + S+I + AI
Sbjct: 161 L--------NNDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKD 211
Query: 275 ------------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPS 322
+V+S+SLGG A D I A GI +V ++GN+G
Sbjct: 212 GDGIIAGDPDDDAAEVISMSLGGPADD--SYLYDMII----QAYNAGIVIVAASGNEGAP 265
Query: 323 SGSVVNFAPWIFTVAASTID 342
S S P + V A +
Sbjct: 266 SPSYPAAYPEVIAVGAIDSN 285
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 24/127 (18%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
IA FS R P +++APGV+IL+ + + + GT+M+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYPDDSYET------------LMGTAMAT 324
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTAT--QTNNLRAPITTNSGAAATPYDFGAGEV 610
PH+SGVVA I+ + + + + G D+G G V
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVV 384
Query: 611 STTASLQ 617
++Q
Sbjct: 385 RAALAVQ 391
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 48/205 (23%), Positives = 68/205 (33%), Gaps = 47/205 (22%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
S I I+DTGV K +G
Sbjct: 30 SGAKIAIVDTGVQSNHPDLAGKVVGGW--------------------------------- 56
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D V N +P++ GHGTH A AA G A P + I RV
Sbjct: 57 DFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTGIAGTA--------PKASILAVRVLDNSG 108
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
T + + A G V+SLSLGG+ G + +A G VV +AG
Sbjct: 109 SGTWTAVANGITYAADQGAKVISLSLGGTVGN--SGLQQAVN----YAWNKGSVVVAAAG 162
Query: 318 NDGPSSGSVVNFAPWIFTVAASTID 342
N G ++ + + VA++ +
Sbjct: 163 NAGNTAPNYPAYYSNAIAVASTDQN 187
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 35/125 (28%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+ FS G D+ APG +I + + + +SGTSM+
Sbjct: 189 NKSSFSTYGSWV--------DVAAPGSSIYSTYPTSTYAS------------LSGTSMAT 228
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVST 612
PH++GV + Q + S I++A+ TA + + T + G V+
Sbjct: 229 PHVAGVAGLLASQGRS--ASNIRAAIENTADKI-------------SGTGTYWAKGRVNA 273
Query: 613 TASLQ 617
++Q
Sbjct: 274 YKAVQ 278
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 5e-21
Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 15/145 (10%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
V S +D GHGTHVA T A G+A P + + +V
Sbjct: 48 SFVPGEPSTQDGNGHGTHVAGTIAALN-NSIGVLGVA--------PSAELYAVKVLGASG 98
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
+ S+I + A +G+ V +LSLG + + A G+ VV ++G
Sbjct: 99 SGSVSSIAQGLEWAGNNGMHVANLSLGSPSP------SATLEQAVNSATSRGVLVVAASG 152
Query: 318 NDGPSSGSVVNFAPWIFTVAASTID 342
N G S S V A+ +
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQN 177
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 3e-18
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 34/125 (27%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
A FS G DI APGVN+ + + G+ ++GTSM+
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTYPGSTYAS------------LNGTSMAT 218
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVST 612
PH++G A +K +NP++S +I++ + TAT + +G+G V+
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATS--------------LGSTNLYGSGLVNA 264
Query: 613 TASLQ 617
A+ +
Sbjct: 265 EAATR 269
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 1e-20
Identities = 54/325 (16%), Positives = 96/325 (29%), Gaps = 71/325 (21%)
Query: 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALS 90
G Y+V + S R + + I+ + GF ++S +
Sbjct: 76 GTYVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELAL 135
Query: 91 KKPGVVSIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVW 150
K P V I D + + W+ +I + D S + +LDT +
Sbjct: 136 KLPHVDYIEEDSSVFAQSI-PWNLERITPPRY----RADEYQPPDGGSLVEVYLLDTSIQ 190
Query: 151 PESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMV 210
+ R ++ E+D +
Sbjct: 191 SDHREIE--------------------------GRVMVTDFENVPEEDGTRFHRQASKCD 224
Query: 211 GHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDD 270
HGTH+A +G G+A G ++ ++ RV + + T S L +
Sbjct: 225 SHGTHLAGVVSG------RDAGVAKGASM-------RSL-RVLNCQGKGTVSGTLIGLEF 270
Query: 271 AIADGVD------VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDG---- 320
+ V+ L L G + + G+ +V +AGN
Sbjct: 271 IRKSQLVQPVGPLVVLLPLAGGY---SRVLNAACQ----RLARAGVVLVTAAGNFRDDAC 323
Query: 321 ---PSSGSVVNFAPWIFTVAASTID 342
P+S AP + TV A+
Sbjct: 324 LYSPAS------APEVITVGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 2e-15
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APG +I+ A T F SGTS + H++G+ A + P + +
Sbjct: 360 DLFAPGEDIIGASSDCSTC----------FVSQSGTSQAAAHVAGIAAMMLSAEPELTLA 409
Query: 573 EIKSAVMTTATQ-------TNNLRAPITTNSGAAATPYDFGAGEVSTTAS 615
E++ ++ + + + +T N AA P GAG +
Sbjct: 410 ELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRT 459
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 44/166 (26%), Positives = 62/166 (37%), Gaps = 22/166 (13%)
Query: 193 YDIEDDVVANGQSPRDMVGHGTHVASTAAGQAV-QGASYYGLAAGTAIGGSPGSRIAVYR 251
D S D GHGTHVA TA A YG+A P + + Y+
Sbjct: 52 KDFTGATTPINNSCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYK 103
Query: 252 VCSPEYGCTGSNILAAFDDAIADGV-----DVLSLSLGGSAGIVRPLTDDPIALGAFHAV 306
V +I AA A ++S+SLG SA + I+ +A
Sbjct: 104 VLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA------NNSLISSAVNYAY 157
Query: 307 EHGITVVCSAGNDGPSSGSVVN--FAPWIFTVAASTIDRDFESDIV 350
G+ +V +AGN G S G++ P VAA + + V
Sbjct: 158 SKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRV 203
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 4e-20
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 20/132 (15%)
Query: 483 VSVTKYKPAPAIAYFSARGP----SPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKE 538
+ + +A +S+RG +I+APG ++ + W
Sbjct: 192 LENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGY-------- 243
Query: 539 PPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGA 598
N ISGTSM+ PH+SG+ A I +NP+ S ++++S + A A
Sbjct: 244 ----NTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSV----DIKGGYGAA 295
Query: 599 AATPYDFGAGEV 610
Y G G
Sbjct: 296 IGDDYASGFGFA 307
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-20
Identities = 41/145 (28%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D V N P D+ HGTHVA AA + G+A P +RI R
Sbjct: 58 DFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIAGMA--------PNTRILAVRALDRNG 109
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
T S+I A A G +V++LSLG ++ + +A G VV +AG
Sbjct: 110 SGTLSDIADAIIYAADSGAEVINLSLGCDCHT--TTLENAVN----YAWNKGSVVVAAAG 163
Query: 318 NDGPSSGSVVNFAPWIFTVAASTID 342
N+G S+ + V A
Sbjct: 164 NNGSSTTFEPASYENVIAVGAVDQY 188
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 35/125 (28%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+A FS G D+ APGV+I++ GN + +SGTSM+
Sbjct: 190 RLASFSNYGTWV--------DVVAPGVDIVSTITGNR------------YAYMSGTSMAS 229
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVST 612
PH++G+ A + Q EI+ A+ TA + + T F G +++
Sbjct: 230 PHVAGLAALLASQGRN--NIEIRQAIEQTADKI-------------SGTGTYFKYGRINS 274
Query: 613 TASLQ 617
++
Sbjct: 275 YNAVT 279
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 5e-20
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 198 DVVANGQSP-RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256
+V + +P +D HGTHVA T A G+A P + + +V +
Sbjct: 49 SMVPSETNPFQDNNSHGTHVAGTVAALN-NSIGVLGVA--------PSASLYAVKVLGAD 99
Query: 257 YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSA 316
S I+ + AIA+ +DV+++SLGG +G + AV G+ VV +A
Sbjct: 100 GSGQYSWIINGIEWAIANNMDVINMSLGGPSGS--AALKAAVD----KAVASGVVVVAAA 153
Query: 317 GNDGPSSGSVVNF----APWIFTVAASTID 342
GN+G S S P + V A
Sbjct: 154 GNEGTSGSSSTVGYPGKYPSVIAVGAVDSS 183
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 34/125 (27%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
A FS+ GP + D+ APGV+I + GN G +GTSM+
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPGNKYGA------------YNGTSMAS 224
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVST 612
PH++G A I ++P ++ ++++S++ T T+ + +G G ++
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTK--------------LGDSFYYGKGLINV 270
Query: 613 TASLQ 617
A+ Q
Sbjct: 271 QAAAQ 275
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 193 YDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRV 252
++ D + + D GHGTHVA T A G+ G+A P + + + +
Sbjct: 67 VNLTTDYGGDETNFSDNNGHGTHVAGTVAAAE-TGSGVVGVA--------PKADLFIIKA 117
Query: 253 CSPEYGCTGSNILAAFDDAI------ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAV 306
S + I A A+ + + ++++SLGG D + +AV
Sbjct: 118 LSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDS--EELHDAVK----YAV 171
Query: 307 EHGITVVCSAGNDGPSSGSVVNF-----APWIFTVAASTID 342
+ ++VVC+AGN+G F + V A D
Sbjct: 172 SNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD 212
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 25/96 (26%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
++ F+ DI APGV I + ++ + +SGT+M+
Sbjct: 214 RLSDFTNTNEEI--------DIVAPGVGIKSTYLDSGY------------AELSGTAMAA 253
Query: 553 PHISGVVAAIKHQNP-----TFSPSEIKSAVMTTAT 583
PH++G +A I + + S +EI + ++ AT
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRAT 289
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 5e-19
Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+A FS+RGP+ R KPD+ APG IL+A + + + GTSM+
Sbjct: 201 HVAQFSSRGPTKDGRI--KPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 553 PHISGVVAAI-----KHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGA 607
P ++G VA + K++ T PS +K+A++ A + G + G
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA-----------ADIGLGYPNGNQGW 307
Query: 608 GEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSISN 667
G V+ SL V E+++L Y + + + + D + V +++
Sbjct: 308 GRVTLDKSLNVAYVNESSSLSTSQKATYSFTATAGKPLKISLVWSDAPASTTASVTLVND 367
Query: 668 INYPSIAVSSFDGKE--GRTISRTVTNVAGNNETIYTVAVDAPQ 709
++ + +++ +G + G + + + V ++APQ
Sbjct: 368 LD---LVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFINAPQ 408
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 8e-19
Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 46/223 (20%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
I+ + DTG+ + + ++G A
Sbjct: 22 QGQIVAVADTGLDTGRNDSSMHEA------FRGKITALYA-------------------- 55
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
+ + D GHGTHVA + G G++ G+A P + + +
Sbjct: 56 --LGRTNNANDTNGHGTHVAGSVLG---NGSTNKGMA--------PQANLVFQSIMDSGG 102
Query: 258 GCTG--SNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCS 315
G G SN+ F A + G + + S G + + ++ +T++ +
Sbjct: 103 GLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVN---GAYTTDSRNVDDYVRKNDMTILFA 159
Query: 316 AGNDGPSSGSVVNFA--PWIFTVAASTIDRDFESDIVLGGNKV 356
AGN+GP+ G++ TV A+ R N V
Sbjct: 160 AGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHV 202
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 9e-19
Identities = 54/330 (16%), Positives = 99/330 (30%), Gaps = 82/330 (24%)
Query: 55 LASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSK-KPGVVSIFPDPVLQLHTTRS-- 111
++K K +++ + +++ A+AL+ K + I + + ++
Sbjct: 57 FNKLVKKKSLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTID 115
Query: 112 -----------WDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKD 160
WD KI S + + ++T I I+DTGV + +
Sbjct: 116 RTSNESLFSRQWDMNKIT-------NNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNN- 167
Query: 161 MGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTA 220
+ N N F E + + D GHGT V+
Sbjct: 168 ------FSTDSKNLVPLNG------------FRGTEPEETGDVHDVNDRKGHGTMVSGQT 209
Query: 221 AGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLS 280
+ A G IG +P ++ +YRV + + A A DG V++
Sbjct: 210 S------------ANGKLIGVAPNNKFTMYRVFGSK-KTELLWVSKAIVQAANDGNQVIN 256
Query: 281 LSLGGSAGIVRPLTDDPIALGAFH----------AVEHGITVVCSAGNDGPSSGSVVNFA 330
+S+G + + A + VV +AGNDG
Sbjct: 257 ISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLK 316
Query: 331 ------------------PWIFTVAASTID 342
+ TV ++
Sbjct: 317 LQREYQGNGEVKDVPASMDNVVTVGSTDQK 346
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 18/108 (16%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPL----------F 542
++ FS G + DI APG + EG +
Sbjct: 348 NLSEFSNFGMN-------YTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 543 NVISGTSMSCPHISGVVAAIKHQ-NPTFSPSEIKSAVMTTATQTNNLR 589
+GT+++ P +SG +A I + + P + + T NN
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKP 448
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 41/168 (24%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 195 IEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCS 254
+ V + D GHGTHV T A +G +PG +I RV
Sbjct: 58 LRGKVSTKLRDCADQNGHGTHVIGTIAALN---------NDIGVVGVAPGVQIYSVRVLD 108
Query: 255 PEYGCTGSNILAAFDDAIAD--------------------GVDVLSLSLGGSAGIVRPLT 294
+ S+I + AI +V+S+SLGG A
Sbjct: 109 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD--DSYL 166
Query: 295 DDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTID 342
D I A GI +V ++GN+G S S P + V A +
Sbjct: 167 YDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 210
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 46/138 (33%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
IA FS R P +++APGV+IL+ + + + GT+M+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYPDDSYET------------LMGTAMAT 249
Query: 553 PHISGVVAAIKHQN-------------PTFSPSEIKSAVMTTATQTNNLRAPITTNSGAA 599
PH+SGVVA I+ S + ++ + TA + G
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA-----------DDLGPT 298
Query: 600 ATPYDFGAGEVSTTASLQ 617
D+G G V ++Q
Sbjct: 299 GWDADYGYGVVRAALAVQ 316
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 18/92 (19%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+ + FS G DI APG +I ++W +++ N ISGTSM+
Sbjct: 186 SRSSFSNYGTCL--------DIYAPGSSITSSWYTSNSA----------TNTISGTSMAS 227
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
PH++GV A +NP SP+++ + + T AT
Sbjct: 228 PHVAGVAALYLDENPNLSPAQVTNLLKTRATA 259
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 45/154 (29%), Positives = 63/154 (40%), Gaps = 36/154 (23%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D + N D GHGTHVA T G S YG+A + + V RV +
Sbjct: 58 DFIDNDYDATDCNGHGTHVAGTIGG------STYGVAKNVNV-------VGV-RVLNCSG 103
Query: 258 GCTGSNILAAFDDAIADGV--DVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCS 315
+ S ++A + + V ++SLGG A TDD + AV GIT V +
Sbjct: 104 SGSNSGVIAGINWVKNNASGPAVANMSLGGGAS---QATDDAVN----AAVAAGITFVVA 156
Query: 316 AGNDG-------PSSGSVVNFAPWIFTVAASTID 342
AGND P+ A TV ++T +
Sbjct: 157 AGNDNSNACNYSPAR------AADAITVGSTTSN 184
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 3e-16
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 513 DITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPS 572
D+ APG +I+ A T F SGTS + H++G+ A + P + +
Sbjct: 208 DLFAPGEDIIGASSDCSTC----------FVSQSGTSQAAAHVAGIAAMMLSAEPELTLA 257
Query: 573 EIKSAVMTTATQ-------TNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPG 619
E++ ++ + + + +T N AA P GAG ++
Sbjct: 258 ELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSA 311
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 76.9 bits (189), Expect = 9e-15
Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 40/171 (23%)
Query: 185 RKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPG 244
R ++ E+D + HGTH+A +G G+A G ++
Sbjct: 47 RVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSG------RDAGVAKGASM----- 95
Query: 245 SRIAVYRVCSPEYGCTGSNILAAFDDAIAD------GVDVLSLSLGGSAGIVRPLTDDPI 298
++ RV + + T S L + G V+ L L G +
Sbjct: 96 --RSL-RVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY-------SRVL 145
Query: 299 ALGAFHAVEHGITVVCSAGNDG-------PSSGSVVNFAPWIFTVAASTID 342
G+ +V +AGN P+S AP + TV A+
Sbjct: 146 NAACQRLARAGVVLVTAAGNFRDDACLYSPAS------APEVITVGATNAQ 190
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 18/92 (19%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
A A FS G D+ APG +I +AW +DT ++GTSM+
Sbjct: 184 ARASFSNYGSCV--------DLFAPGASIPSAWYTSDTA----------TQTLNGTSMAT 225
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
PH++GV A QNP+ +P+ + SA++ AT
Sbjct: 226 PHVAGVAALYLEQNPSATPASVASAILNGATT 257
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 36/151 (23%)
Query: 201 ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCT 260
A G + +D GHGTHVA T G YG+A + AV RV +
Sbjct: 59 ALGGNGQDCNGHGTHVAGTIGGVT------YGVAKAVNL-------YAV-RVLDCNGSGS 104
Query: 261 GSNILAAFDDAIADGVD--VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGN 318
S ++A D + V ++SLGG D+ + +++ G+ +AGN
Sbjct: 105 TSGVIAGVDWVTRNHRRPAVANMSLGGGVS---TALDNAVK----NSIAAGVVYAVAAGN 157
Query: 319 DG-------PSSGSVVNFAPWIFTVAASTID 342
D P+ TV A+T
Sbjct: 158 DNANACNYSPAR------VAEALTVGATTSS 182
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 33/219 (15%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
+ ++ ++DTG+ + N + P + + + + +
Sbjct: 32 QNVVVAVVDTGILHHRD-LNAN-VLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACG 89
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
+ D HG+HVA T A G+A G+++ R
Sbjct: 90 GRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVA--------YGAKVVPVRALGRC- 140
Query: 258 GCTGSNILAAFDDAI----------ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVE 307
G S+I A + V+++SLG + A
Sbjct: 141 GGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQT---MIDR--ATR 195
Query: 308 HGITVVCSAGNDGPSSGSVVNFAP----WIFTVAASTID 342
G VV +AGN+ ++ N P + +V A+T
Sbjct: 196 LGALVVVAAGNENQNAS---NTWPTSCNNVLSVGATTSR 231
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
A FS G D+ APG +IL+ + ++ ++GTSM+
Sbjct: 233 IRASFSNYGVDV--------DLAAPGQDILSTVDSGTRRPVSDA-----YSFMAGTSMAT 279
Query: 553 PHISGVVA----AIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTN 595
PH+SGV A A N +P+E+K +++T + N +
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGS 326
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+ + FS G D+ APG I +AW ISGTSM+
Sbjct: 184 SRSSFSNWGSCV--------DLFAPGSQIKSAWYDGGY------------KTISGTSMAT 223
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
PH++GV A +N +P ++ + + A++
Sbjct: 224 PHVAGVAALYLQENNGLTPLQLTGLLNSRASE 255
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 36/154 (23%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D V N D GHGTHVA T G S YG+A I + V RV S
Sbjct: 56 DFVDNDADSSDCNGHGTHVAGTIGG------SQYGVAKNVNI-------VGV-RVLSCSG 101
Query: 258 GCTGSNILAAFDDAIADGV--DVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCS 315
T S +++ D + V ++SLGG D + A++ G++ + +
Sbjct: 102 SGTTSGVISGVDWVAQNASGPSVANMSLGGGQS---TALDSAVQ----GAIQSGVSFMLA 154
Query: 316 AGNDG-------PSSGSVVNFAPWIFTVAASTID 342
AGN P+ P TV ++T
Sbjct: 155 AGNSNADACNTSPAR------VPSGVTVGSTTSS 182
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 3e-15
Identities = 47/276 (17%), Positives = 85/276 (30%), Gaps = 31/276 (11%)
Query: 484 SVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPL-- 541
++ Y +A FS+R + APGV IL+ G D+ E
Sbjct: 318 ALDYYGGTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPAT 369
Query: 542 ----FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSG 597
++ GTSM+ PH++GVVA + + P P +I+ + TA
Sbjct: 370 NGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDF-----------N 418
Query: 598 AAATPYDFGAGEV----STTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKD 653
+D G G V + L E + + +G + M+
Sbjct: 419 GNGWDHDTGYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCY 478
Query: 654 FACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNV 713
+A G+ +I S F G + Y +A+ +
Sbjct: 479 YAKTGPDGIARFPHI--DSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQA 536
Query: 714 KVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGS 749
+ + + +++ T S +
Sbjct: 537 SFVGFGVSPDATQLNVNFNSTLQVKFSTNLSTLKDP 572
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 8e-15
Identities = 36/160 (22%), Positives = 53/160 (33%), Gaps = 32/160 (20%)
Query: 195 IEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGG---SPGSRIAVYR 251
D+ + G GTHVA T A A G +PG++I
Sbjct: 183 AFDEELPAGTDSSYGGSAGTHVAGTIA------------AKKDGKGIVGVAPGAKIMPIV 230
Query: 252 VCSPEYGCTG------SNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHA 305
+ G + A A G V++ S GG + +A
Sbjct: 231 IFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGY--SYTMKEAFD----YA 284
Query: 306 VEHGITVVCSAGNDGPSSGSVVNF---APWIFTVAASTID 342
+EHG+ +V SAGN+ S + P + VAA
Sbjct: 285 MEHGVVMVVSAGNNTSDSH--HQYPAGYPGVIQVAALDYY 322
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 6e-15
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 19/114 (16%)
Query: 476 VATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPE 535
VA + S G + DI APG NI TG
Sbjct: 218 VAALAQYRKGETPVLHGGGITGSRFGNN-------WVDIAAPGQNITFLRPDAKTGT--- 267
Query: 536 GKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLR 589
SGTS + +SGV+AA+ NP + +E+K ++ +A + +L
Sbjct: 268 ---------GSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV 312
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 37/256 (14%), Positives = 67/256 (26%), Gaps = 73/256 (28%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
+ ++ ++D+GV + A D
Sbjct: 44 TPVVVSVVDSGV----------AFIG---GLSDSEFAKFSFTQ----------------D 74
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
+ + HGT +AS A + YG+ G P + I+ RV
Sbjct: 75 GSPFPVKKSEALYIHGTAMASLIASR-------YGIY-----GVYPHALISSRRVIPDGV 122
Query: 258 GCTGSNILA---AFDDAIADGVDVLSLSLGGSAGIVRPLT-DDPIALGAFHAVEHGITVV 313
+ + + ++++S G + + + +V
Sbjct: 123 QDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRLIV 178
Query: 314 CSAGNDG-----------------PSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKV 356
+ GNDG SV + VAA R E+ V
Sbjct: 179 AAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETP-------V 231
Query: 357 IKGESINFSNLQKSPV 372
+ G I S + V
Sbjct: 232 LHGGGITGSRFGNNWV 247
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+ FS G DI PG +IL+ W+G T ISGTSM+
Sbjct: 188 RRSSFSNYGSVL--------DIFGPGTDILSTWIGGST------------RSISGTSMAT 227
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
PH++G+ A + T + + + TA +
Sbjct: 228 PHVAGLAAYLMTLGKT-TAASACRYIADTANK 258
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 41/152 (26%), Positives = 54/152 (35%), Gaps = 41/152 (26%)
Query: 205 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNI 264
S RD GHGTH A T + YG+A T + V +V S I
Sbjct: 62 SSRDGNGHGTHCAGTVGSRT------YGVAKKTQL-------FGV-KVLDDNGSGQYSTI 107
Query: 265 LAAFDDAIADGVD-------VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
+A D +D + V SLSLGG + A G+ V +AG
Sbjct: 108 IAGMDFVASDKNNRNCPKGVVASLSLGGGYS---SSVNSAAA----RLQSSGVMVAVAAG 160
Query: 318 NDG-------PSSGSVVNFAPWIFTVAASTID 342
N+ P+S P + TV AS
Sbjct: 161 NNNADARNYSPAS------EPSVCTVGASDRY 186
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 493 AIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSC 552
+ FS G DI APG +I + W+G T N ISGTSM+
Sbjct: 189 VRSTFSNYGRVV--------DIFAPGTSITSTWIGGRT------------NTISGTSMAT 228
Query: 553 PHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
PHI+G+ A + S + + T +T+
Sbjct: 229 PHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTK 259
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 41/152 (26%)
Query: 205 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNI 264
+ RD GHGTH A T + +G+A +I V +V + SNI
Sbjct: 63 TARDGHGHGTHCAGTIGSKT------WGVAKKVSI-------FGV-KVLDDSGSGSLSNI 108
Query: 265 LAAFDDAIADGVD-------VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
+A D +D V S+SLGG + A G+ V +AG
Sbjct: 109 IAGMDFVASDRQSRNCPRRTVASMSLGGGY-------SAALNQAAARLQSSGVFVAVAAG 161
Query: 318 NDG-------PSSGSVVNFAPWIFTVAASTID 342
ND P+S P + TV A+ +
Sbjct: 162 NDNRDAANTSPAS------EPTVCTVGATDSN 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-07
Identities = 48/367 (13%), Positives = 105/367 (28%), Gaps = 97/367 (26%)
Query: 452 FPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILK 511
P +++S +E I+ ++ V+ L K + F +L+
Sbjct: 41 MPKSILSKEEIDHIIM----SKDAVSGTLRLFWTLLSKQEEMVQKF--------VEEVLR 88
Query: 512 PDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSP 571
+ ++ + I + K+ P
Sbjct: 89 INY---------KFLMSPIKTEQRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQP 136
Query: 572 -SEIKSAVMTTATQTNNLR-APITTNSGAAATPYDFGAG------EVSTTASLQ---PGL 620
+++ A++ LR A G G+G +V + +Q
Sbjct: 137 YLKLRQALL-------ELRPAKNVLIDGVL------GSGKTWVALDVCLSYKVQCKMDFK 183
Query: 621 VY---------ETTTLDYLNFLCY-YGYDLSKIKMIATTIPKDFACPKDSGVDSISNINY 670
++ T L+ L L Y + + ++ I + + + Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 671 PS---I--------AVSSFDGKEGRTI--SR--TVTNVAGNNETIYTVAVDAPQGLNVKV 715
+ + A ++F+ + + +R VT+ T + L
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--- 299
Query: 716 IPEELQ--FTK----SGQKLSYQVTFTSALSPLKEDVFGS------ITWSNGKY----KV 759
P+E++ K Q L +V +P + + TW N K+ K+
Sbjct: 300 -PDEVKSLLLKYLDCRPQDLPREVL---TTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 760 RSLFVVS 766
++ S
Sbjct: 356 TTIIESS 362
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 4e-07
Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 16/133 (12%)
Query: 494 IAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCP 553
+S + + + G I ++ + N GTS + P
Sbjct: 232 HPPYSEGCSA----VMAVTYSSGSGEYIHSSDINGRC-----------SNSHGGTSAAAP 276
Query: 554 HISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATP-YDFGAGEVST 612
+GV + NP + +++ + +A +S + +G G++
Sbjct: 277 LAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDA 336
Query: 613 TASLQPGLVYETT 625
++ +E
Sbjct: 337 HKLIEMSKTWENV 349
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 5e-06
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 24/160 (15%)
Query: 198 DVVANGQSPR---DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCS 254
D N P+ HGT A A + G+ ++I+ R+ S
Sbjct: 83 DFNDNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVGVG--------YNAKISGIRILS 134
Query: 255 PEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGI-----VRPLTDDPIALGAFHAVEHG 309
T + A+ D D+ S S G + L + G +
Sbjct: 135 --GDITTEDEAASLIYG-LDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSK 191
Query: 310 ITVVCSAGNDGPSSGSVVNF-----APWIFTVAASTIDRD 344
+ A +G + G N+ + + T+ A
Sbjct: 192 GAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDL 231
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 17/120 (14%), Positives = 39/120 (32%)
Query: 546 SGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDF 605
+GTS S P +G++A N + +++ V+ T+ + TN + +
Sbjct: 258 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 317
Query: 606 GAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSI 665
G G + A + + T + K + + + + +
Sbjct: 318 GYGLLDAGAMVALAQNWTTVAPQRKCIVEILVEPKDIGKRLEVRKAVTACLGEPNHITRL 377
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 33/231 (14%), Positives = 61/231 (26%), Gaps = 48/231 (20%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
++ ILD G+ G ND D
Sbjct: 38 HGIVVSILDDGIEKNHPDLAGN-------YDPGASFDVNDQ------------------D 72
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
+ + HGT A A A G G+A +RI R
Sbjct: 73 PDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVA--------YNARIGGVR----ML 120
Query: 258 GCTGSNILAAFDDAIA-DGVDVLSLSLGGSAGIV-----RPLTDDPIALGAFHAVE-HGI 310
++ + A + + + + S S G L ++ G G
Sbjct: 121 DGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGS 180
Query: 311 TVVCSAGNDGPSSGSV----VNFAPWIFTVAASTIDRDFESDIVLGGNKVI 357
V ++GN G S + + +++++T + + +
Sbjct: 181 IFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLA 231
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-05
Identities = 14/73 (19%), Positives = 23/73 (31%)
Query: 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALS 90
G Y+V + S R + + I+ + GF ++S +
Sbjct: 38 GTYVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELAL 97
Query: 91 KKPGVVSIFPDPV 103
K P V I D
Sbjct: 98 KLPHVDYIEEDSS 110
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 1e-04
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWK--KNSIIRSYKHGFSGFAARLSAEEAHA 88
G Y+V + S + A+ L + + I+ + GF ++S +
Sbjct: 48 GTYVVVLKEETHL--SQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLEL 105
Query: 89 LSKKPGVVSIFPDPV 103
K P V I D
Sbjct: 106 ALKLPHVDYIEEDSS 120
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.83 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.0 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.9 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.89 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.65 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.48 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.21 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.69 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 95.12 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 94.53 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 93.63 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 92.86 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 92.76 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 90.13 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 88.1 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 86.19 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 85.98 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 85.13 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 82.77 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 82.76 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-119 Score=1043.39 Aligned_cols=625 Identities=37% Similarity=0.591 Sum_probs=563.4
Q ss_pred cccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCcee
Q 004113 108 TTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKI 187 (773)
Q Consensus 108 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki 187 (773)
++++|+|+||+... .+|..+.+|+||+|||||||||++||+|.+.+++|+|.+|+|.|+.+.+|+...||+|+
T Consensus 1 Tt~s~~flgl~~~~-------~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~ki 73 (649)
T 3i6s_A 1 TTHTSDFLKLNPSS-------GLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKL 73 (649)
T ss_dssp CCSHHHHTTCCSSS-------SHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSE
T ss_pred CCCChHHcCCCCch-------hhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccce
Confidence 46899999998533 69999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeeeeccccccc-----cCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHH
Q 004113 188 IGARFYDIEDDV-----VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGS 262 (773)
Q Consensus 188 ~~~~~~~~~~~~-----~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~ 262 (773)
++.++|.+++.. ..+..++.|..||||||||||||+..++.+++|++.+.+.||||+|+|++||+|+.. ++..+
T Consensus 74 ig~~~f~~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~ 152 (649)
T 3i6s_A 74 IGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTS 152 (649)
T ss_dssp EEEEECCHHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETT-EECHH
T ss_pred eeeEeccCcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCC-CCCHH
Confidence 999999865431 124457889999999999999999999999999999999999999999999999988 58999
Q ss_pred HHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccC
Q 004113 263 NILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTID 342 (773)
Q Consensus 263 ~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~ 342 (773)
++++||+||+++|+||||||||... ..+..+++.+++++|.++|++||+||||+|+...++++.+||+|+|||++.|
T Consensus 153 ~i~~Ai~~A~~~gvdVIn~SlG~~~---~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~d 229 (649)
T 3i6s_A 153 DLIAAMDQAVADGVDMISISYGYRF---IPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTD 229 (649)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCS---CCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECS
T ss_pred HHHHHHHHHHHcCCCEEEeCCccCC---cccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecc
Confidence 9999999999999999999999875 5778899999999999999999999999999999999999999999999999
Q ss_pred cceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccc--cceEEEEecCCCCCch
Q 004113 343 RDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALV--KGKIVLCDNDDDMGSV 420 (773)
Q Consensus 343 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gki~l~~~~~~~~~~ 420 (773)
|.|...+.+++++++.|.+++..... ...+|++|.. ....|.+..+++.++ +|||++|+|+. +.+
T Consensus 230 r~f~~~~~lgng~~~~g~sl~~~~~~-~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~--~~~ 296 (649)
T 3i6s_A 230 RTFAGTLTLGNGLKIRGWSLFPARAF-VRDSPVIYNK----------TLSDCSSEELLSQVENPENTIVICDDNG--DFS 296 (649)
T ss_dssp CEEEEEEEETTSCEEEEECCCSSCBC-EEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEEEECCCS--CHH
T ss_pred cceeeEEEeCCCcEEeeeecccCccc-CcceeeEecc----------cccccccccccccccccCCcEEEEeCCC--ccH
Confidence 99999999999999999999876543 6789999865 246799998888877 99999999964 679
Q ss_pred hhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCC
Q 004113 421 VDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSAR 500 (773)
Q Consensus 421 ~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~ 500 (773)
.+|..+++.+|+.|+|++|+. .....+.+.+|+++++.++++.|+.|++++.+++++|.+..+..+..+.+.++.||||
T Consensus 297 ~~k~~~~~~~Ga~g~i~~n~~-~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSr 375 (649)
T 3i6s_A 297 DQMRIITRARLKAAIFISEDP-GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSAR 375 (649)
T ss_dssp HHHHHHHHHTCSEEEEECCCG-GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCC
T ss_pred HHHHHHHHhcCceEEEEecCc-cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCC
Confidence 999999999999999999988 4566678899999999999999999999999999999999999888899999999999
Q ss_pred CCCCCCCCCccCceEeCCccEEeeecCCCCCCCC-CCC-CCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 004113 501 GPSPLTRNILKPDITAPGVNILAAWMGNDTGEAP-EGK-EPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAV 578 (773)
Q Consensus 501 Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~-~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L 578 (773)
||+...+++|||||+|||++|+++++........ .+. +...|..+||||||||||||++|||||+||+|+|++||++|
T Consensus 376 GP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaL 455 (649)
T 3i6s_A 376 GPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAM 455 (649)
T ss_dssp SSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred CCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9999878999999999999999999875433322 111 34789999999999999999999999999999999999999
Q ss_pred HhcccccCCCCCccccC-CCCCCCCCCCCcccccccccCCCceeecCCchhhhccccccCCCcceeeeeeccCCCCcc--
Q 004113 579 MTTATQTNNLRAPITTN-SGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFA-- 655 (773)
Q Consensus 579 ~~TA~~~~~~g~~~~~~-~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 655 (773)
|+||.+++..+.++.+. .+.++.++.||+|+||+.+|++||||||++.+||++|||.+||+..+|+.+++ .+++
T Consensus 456 mtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~---~~~~~~ 532 (649)
T 3i6s_A 456 MTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR---SSASHN 532 (649)
T ss_dssp HHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT---TTSCC-
T ss_pred hcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec---CCCcCC
Confidence 99999999999888875 45678899999999999999999999999999999999999999999999998 5667
Q ss_pred CCCCCCCCCCCCCCCCeEEEec-cCCCcc-----EEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEE
Q 004113 656 CPKDSGVDSISNINYPSIAVSS-FDGKEG-----RTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKL 729 (773)
Q Consensus 656 ~~~~~~~~~~~~ln~ps~~~~~-~~~~~~-----~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~ 729 (773)
|+. ...+||||||++.. +.+ . ++|+||||||| +..++|+++++.|.|++|+|+|++|+|.+.+|++
T Consensus 533 C~~-----~~~~lNyPs~~~~~~~~~--~~~~~~~~~~Rtvtnvg-~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~ 604 (649)
T 3i6s_A 533 CSN-----PSADLNYPSFIALYSIEG--NFTLLEQKFKRTVTNVG-KGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQ 604 (649)
T ss_dssp CCC-----CCCCCCCSSEEEEECCSS--CCCCEEEEEEEEEEECC---CEEEEEEEECCTTEEEEEESSEEEECC-CCEE
T ss_pred CCC-----chhhcCCCcEEeecccCC--CCccceEEEEEEEEEeC-CCCcEEEEEEecCCCCEEEEECCEEEEecCCCEE
Confidence 975 34799999999986 454 4 89999999999 8889999999999999999999999998899999
Q ss_pred EEEEEEEeccCCCCCcEEEEEEEEC--CceeEEEEEEEEee
Q 004113 730 SYQVTFTSALSPLKEDVFGSITWSN--GKYKVRSLFVVSSK 768 (773)
Q Consensus 730 ~~~vt~~~~~~~~~~~~~G~l~~~~--~~~~v~~P~~~~~~ 768 (773)
+|+|||+......+.|.||+|+|++ +.|.||+||+|+..
T Consensus 605 ~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 605 SYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEEEEECCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEEEecccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 9999999876556789999999999 89999999999876
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-110 Score=973.01 Aligned_cols=618 Identities=41% Similarity=0.704 Sum_probs=522.9
Q ss_pred cccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCcee
Q 004113 108 TTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKI 187 (773)
Q Consensus 108 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki 187 (773)
++++|+|+||+. .+|.+..+|+||+|||||||||++||+|.++++++++.+|+|.|+.+.+| .||+|+
T Consensus 1 tt~s~~flGl~~---------~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~---~~n~k~ 68 (621)
T 3vta_A 1 TTRSWDFLGFPL---------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RCNRKI 68 (621)
T ss_dssp CCSHHHHTTCCT---------TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSC---CCCSSE
T ss_pred CCCChhHcCCCc---------cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCc---ccCcce
Confidence 478999999975 48888999999999999999999999999999999999999999999887 599999
Q ss_pred Eeeeecccccccc-CCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHH
Q 004113 188 IGARFYDIEDDVV-ANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILA 266 (773)
Q Consensus 188 ~~~~~~~~~~~~~-~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ 266 (773)
+++++|..+.... .+..+++|..||||||||||||+..++.+.+|++.+.++||||+|+|++||+|++. +|..+++++
T Consensus 69 ig~~~~~~~~~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~di~~ 147 (621)
T 3vta_A 69 IGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILA 147 (621)
T ss_dssp EEEEECCCSSSCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETT-EECHHHHHH
T ss_pred eeeeecccCCccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCC-CCCHHHHHH
Confidence 9999998775532 45567889999999999999999988888888888899999999999999999988 688999999
Q ss_pred HHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCccee
Q 004113 267 AFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFE 346 (773)
Q Consensus 267 ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~ 346 (773)
||++|+++|+||||||||+... ..+..+++++++++|.++||++|+||||+|+...++++.+||+++|++++.++.+.
T Consensus 148 a~~~a~~~g~dVin~SlG~~~~--~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~ 225 (621)
T 3vta_A 148 AYDDAIADGVDIISLSVGGANP--RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFV 225 (621)
T ss_dssp HHHHHHHHTCSEEEECCCCCCG--GGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEE
T ss_pred HHHHHHHhCCCEEEecCCCCCC--CCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccce
Confidence 9999999999999999998764 56677899999999999999999999999999999999999999999999999999
Q ss_pred eEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcc
Q 004113 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDG 426 (773)
Q Consensus 347 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~ 426 (773)
..+.++++..+.+.++.... ...+++++................|....+++.+++|||++|+++ +..+..+
T Consensus 226 ~~~~~~~~~~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~-----~~~~~~~ 297 (621)
T 3vta_A 226 TQVQIGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEAS-----FGPHEFF 297 (621)
T ss_dssp EEEEETTSCEEEEBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSC-----CCHHHHH
T ss_pred eeEEeccCceeeeeecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecC-----CChhHHh
Confidence 99999999999988876433 567888888777666666677888999999999999999999874 3456667
Q ss_pred cccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCC
Q 004113 427 VKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLT 506 (773)
Q Consensus 427 ~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (773)
....|+.++|++++... ..+.+.+|...++..++..++.|+.....+.+++....+. .....+.++.||||||+...
T Consensus 298 ~~~~Ga~gvi~~~~~~~--~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~~~va~FSSrGP~~~~ 374 (621)
T 3vta_A 298 KSLDGAAGVLMTSNTRD--YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRAT 374 (621)
T ss_dssp HHHTTCSEEEEECSCCS--SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTCCCBCTTSCCCSCTTC
T ss_pred hhhcceeEEEEEecCCC--cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCCCceeeecCCCCCCCC
Confidence 78889999999988653 3456789999999999999999999999998888665554 34568899999999999877
Q ss_pred CCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 004113 507 RNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTN 586 (773)
Q Consensus 507 d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~ 586 (773)
++++||||+|||++|+|+++...... .......|..+||||||||||||++|||||+||+|+|++||++||+||++++
T Consensus 375 ~~ilKPDI~APG~~Ilsa~~~~~~~~--~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~ 452 (621)
T 3vta_A 375 KDVIKPDISGPGVEILAAWPSVAPVG--GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 452 (621)
T ss_dssp TTSCSCCEEEECSSEEEECCSSSCBT--TBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCC
T ss_pred CCeeccccccCCcceEeecCcccccc--CcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccc
Confidence 89999999999999999998643322 2234478999999999999999999999999999999999999999999887
Q ss_pred CCCCccccCCCCCCCCCCCCcccccccccCCCceeecCCchhhhccccccCCCcceeeeeeccCCCCccCCCCCCCCCCC
Q 004113 587 NLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIATTIPKDFACPKDSGVDSIS 666 (773)
Q Consensus 587 ~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (773)
..+. ++.+++||+|+||+.+|++||||||+..+||+.|||.+||+..+++.+++ ....|+.... ....
T Consensus 453 ~~~~--------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~ 520 (621)
T 3vta_A 453 ARFN--------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG---DYSACTSGNT-GRVW 520 (621)
T ss_dssp TTTC--------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC---------------------------------CGG
T ss_pred ccCC--------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeec---cccccCCCCc-Cccc
Confidence 6543 34788999999999999999999999999999999999999999999998 6678875432 3567
Q ss_pred CCCCCeEEEeccCC-CccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCc
Q 004113 667 NINYPSIAVSSFDG-KEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKED 745 (773)
Q Consensus 667 ~ln~ps~~~~~~~~-~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~ 745 (773)
+||||||++..... ..+++|+||||||+ +.+.||+++++.|+|++|+|+|++|+|++.+|+++|+|||+.. .++.|
T Consensus 521 ~lN~pS~~v~~~~~~~~~~t~~rtvtnvg-~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~ 597 (621)
T 3vta_A 521 DLNYPSFGLSVSPSQTFNQYFNRTLTSVA-PQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFV 597 (621)
T ss_dssp GSCCSSEEEECCSSCCEEEEEEEEEEECS-SSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSE
T ss_pred ccccccEEEEccCCCceEEEEEEEEEccC-CCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCce
Confidence 99999999962222 23789999999999 8999999999999999999999999999899999999999874 67889
Q ss_pred EEEEEEEECCceeEEEEEEEEee
Q 004113 746 VFGSITWSNGKYKVRSLFVVSSK 768 (773)
Q Consensus 746 ~~G~l~~~~~~~~v~~P~~~~~~ 768 (773)
+||+|+|+||.|.||+||+|+..
T Consensus 598 ~~g~l~w~d~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 598 VSASLVWSDGVHYVRSPITITSL 620 (621)
T ss_dssp EEEEEEEECSSCCCEEEEEEECC
T ss_pred EEEEEEEEcCCEEEEeCEEEEEe
Confidence 99999999999999999999864
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-81 Score=754.80 Aligned_cols=537 Identities=23% Similarity=0.282 Sum_probs=424.7
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCC----------CcccCCceeEeeeecccccc
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDN----------VSFSCNRKIIGARFYDIEDD 198 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f----------~~~~~n~ki~~~~~~~~~~~ 198 (773)
.+|..+.+|+||+|||||||||++||+|.+. ..|++.|..+..| ...+||+|++++++|.++.
T Consensus 8 ~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~- 80 (926)
T 1xf1_A 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG- 80 (926)
T ss_dssp HHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS-
T ss_pred HHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC-
Confidence 5898899999999999999999999999853 4666666432221 2347999999999997653
Q ss_pred ccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC-CCHHHHHHHHHHHhhCCCc
Q 004113 199 VVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG-CTGSNILAAFDDAIADGVD 277 (773)
Q Consensus 199 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~-~~~~~i~~ai~~a~~~g~d 277 (773)
...|..||||||||||||+...+.+. ++.+.||||+|+|+++|+|+..+. +...++++||++|+++|+|
T Consensus 81 ------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvd 150 (926)
T 1xf1_A 81 ------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAK 150 (926)
T ss_dssp ------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred ------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCc
Confidence 23389999999999999987554331 355799999999999999987632 4567899999999999999
Q ss_pred EEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCC-------------CCCcccC--CCcEEEEcccccC
Q 004113 278 VLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPS-------------SGSVVNF--APWIFTVAASTID 342 (773)
Q Consensus 278 VIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~-------------~~~~~~~--~p~vitVga~~~~ 342 (773)
|||||||..... ...+.+.++.++++|.++|++||+||||+|+. ..++.++ +||+|+|||++.+
T Consensus 151 VIn~SlG~~~~~-~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~ 229 (926)
T 1xf1_A 151 VINMSFGNAALA-YANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPD 229 (926)
T ss_dssp EEEECCSSCCCT-TCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCS
T ss_pred EEEECCCCCCCC-ccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEeccccc
Confidence 999999986421 24456788889999999999999999999963 2233443 7999999999999
Q ss_pred cceeeEEEE-CCceEEeeeeeccC-CCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCch
Q 004113 343 RDFESDIVL-GGNKVIKGESINFS-NLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSV 420 (773)
Q Consensus 343 ~~~~~~~~~-g~~~~~~g~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~ 420 (773)
+.+...+.+ +++....+.++... .++....||+++... .|....+ .+++|||++|+|+. |.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gkivl~~rg~--~~~ 293 (926)
T 1xf1_A 230 KQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGKIALIERGD--IDF 293 (926)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTSEEEEECCS--SCH
T ss_pred cccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCCeEEEEECCC--CCH
Confidence 999888887 55554445544432 233567899999765 3776665 68999999999964 679
Q ss_pred hhhhcccccCCceEEEEEeCCCcc---ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCee--eecccCCCccc
Q 004113 421 VDKKDGVKSLGGVGVIVIDDQSRA---VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVS--VTKYKPAPAIA 495 (773)
Q Consensus 421 ~~k~~~~~~~Ga~g~i~~~~~~~~---~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a 495 (773)
.+|..+++.+||.|+|++++.... .......+|+..++..++..|+. . +..++.+..+ .......+.++
T Consensus 294 ~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~--~~~ti~~~~~~~~~~~~~~~~~a 367 (926)
T 1xf1_A 294 KDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----N--PQKTITFNATPKVLPTASGTKLS 367 (926)
T ss_dssp HHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----C--SSCEEEECSSCEEEECSSCSBCC
T ss_pred HHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----C--CceEEEecccceecccCCcceec
Confidence 999999999999999999987532 13456789999999999998874 3 3344444443 34455678999
Q ss_pred cccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHH----hhCCCCCH
Q 004113 496 YFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIK----HQNPTFSP 571 (773)
Q Consensus 496 ~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~p~ls~ 571 (773)
.||||||+. ++++||||+|||++|+++++. +.|..+||||||||||||++|||+ +.||+|+|
T Consensus 368 ~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp 433 (926)
T 1xf1_A 368 RFSSWGLTA--DGNIKPDIAAPGQDILSSVAN------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTP 433 (926)
T ss_dssp TTSCCCBCT--TSCBSCCEEEECCCEEESSSC------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHH
T ss_pred cccCCCCCC--CCccCceEECCCCCEEeeccC------------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCH
Confidence 999999996 799999999999999999987 789999999999999999999996 46999999
Q ss_pred HH----HHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCceeecCCchhhhccccccCCCcceeeeee
Q 004113 572 SE----IKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLSKIKMIA 647 (773)
Q Consensus 572 ~~----Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~~~~~~~~~ 647 (773)
++ ||++||+||+++...+ ....+++++||+|+||+.+|+++.+ |+|..+++..
T Consensus 434 ~~~~~~Iks~L~~TA~~~~~~~------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~------ 490 (926)
T 1xf1_A 434 SERLDLAKKVLMSSATALYDED------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS------ 490 (926)
T ss_dssp HHHHHHHHHHHHHHSBCCEEGG------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS------
T ss_pred HHHHHHHHHHHHhcCCCcccCC------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc------
Confidence 97 9999999999876532 1224578899999999999999854 6776654322
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCeEEEeccCCCccEEEEEEEEeccCCCC--eEEEEEEeC--CCCcEEEEecCeEEEc
Q 004113 648 TTIPKDFACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNE--TIYTVAVDA--PQGLNVKVIPEELQFT 723 (773)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~tvtn~~~~~~--~ty~~~~~~--~~g~~v~v~p~~~~~~ 723 (773)
++.+.++.. ..+++|||||+| +.+ .+|++++.. |.+..++|+|..|.|.
T Consensus 491 ------------------------~i~l~~~~~--~~~~~~tv~N~g-~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~ 543 (926)
T 1xf1_A 491 ------------------------KVHLNNVSD--KFEVTVNVHNKS-DKPQELYYQATVQTDKVDGKHFALAPKVLYET 543 (926)
T ss_dssp ------------------------CEEEEEECS--EEEEEEEEEECS-SSCEEEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ------------------------eeeccccCc--cEEEEEEEEEeC-CCceeEEEEEEEEeccCCCceEEeccceeEec
Confidence 233444555 788999999999 643 567777765 6788999988877664
Q ss_pred c-------CCcEEEEEEEEEecc--------CCCCCcEEEEEEEE--CCce-eEEEEEEEEeeC
Q 004113 724 K-------SGQKLSYQVTFTSAL--------SPLKEDVFGSITWS--NGKY-KVRSLFVVSSKS 769 (773)
Q Consensus 724 ~-------~~~~~~~~vt~~~~~--------~~~~~~~~G~l~~~--~~~~-~v~~P~~~~~~~ 769 (773)
. +||+++|+|||+... .+++.|+||+|+|+ ++.| .||+||+++..+
T Consensus 544 ~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 544 SWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp CCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred cCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEecC
Confidence 4 499999999999851 24567899999999 4555 499999998765
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-61 Score=546.82 Aligned_cols=370 Identities=26% Similarity=0.397 Sum_probs=291.9
Q ss_pred CCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHH-----------hCCCCeE
Q 004113 28 SKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHAL-----------SKKPGVV 96 (773)
Q Consensus 28 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L-----------~~~p~V~ 96 (773)
.++.+|||.|++.. . .. .+.+.++..+.+++++|+ .|+||+++++.+++++| +++|+|+
T Consensus 33 ~~~~~~iV~~~~~~-~----~~----~~~~~~~~~g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~ 102 (539)
T 3afg_A 33 DQEVSTIIMFDNQA-D----KE----KAVEILDFLGAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQ 102 (539)
T ss_dssp TCEEEEEEEESSHH-H----HH----HHHHHHHHHTCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEE
T ss_pred cCceEEEEEECCCC-C----HH----HHHHHHHhcCCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCee
Confidence 34567999999766 2 11 222233333578999997 49999999999999999 8999999
Q ss_pred EEecCceeccccccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 004113 97 SIFPDPVLQLHTTRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGN 176 (773)
Q Consensus 97 ~V~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~ 176 (773)
+|++++.+++.... .+++.. ...+....+|..+++|+||+|||||||||++||+|.+
T Consensus 103 ~v~~d~~~~~~~~~----~~~~~~-~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------------------ 159 (539)
T 3afg_A 103 FIQEDYVVKVAVET----EGLDES-AAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG------------------ 159 (539)
T ss_dssp EEEECCEEECC----------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT------------------
T ss_pred EEEecccccccCcc----ccCCcc-ccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC------------------
Confidence 99999988764321 122111 0112334799999999999999999999999999963
Q ss_pred CCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC
Q 004113 177 DNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256 (773)
Q Consensus 177 ~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~ 256 (773)
++++.++|.++. ..+.|..||||||||||+|+..+ ..+.+.||||+|+|+.+|+++..
T Consensus 160 ---------~i~~~~d~~~~~------~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~ 217 (539)
T 3afg_A 160 ---------KVIGWVDFVNGK------TTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQ 217 (539)
T ss_dssp ---------TEEEEEETTTCC------SSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTT
T ss_pred ---------CEeeeEECCCCC------CCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCC
Confidence 455666665442 45678999999999999997533 12346899999999999999987
Q ss_pred CCCCHHHHHHHHHHHhhC----CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cccCC
Q 004113 257 YGCTGSNILAAFDDAIAD----GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS--VVNFA 330 (773)
Q Consensus 257 g~~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~--~~~~~ 330 (773)
+.+..+++++||+||+++ |++|||||||... .....+.+..+++++.++|++||+||||+|+...+ .+...
T Consensus 218 g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~---~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~ 294 (539)
T 3afg_A 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ---SSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAA 294 (539)
T ss_dssp SEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS---CCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTC
T ss_pred CCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC---CCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccC
Confidence 667889999999999976 8999999999876 34456888899999999999999999999976544 34556
Q ss_pred CcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEE
Q 004113 331 PWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVL 410 (773)
Q Consensus 331 p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l 410 (773)
+++|+|||++.
T Consensus 295 ~~vitVgA~~~--------------------------------------------------------------------- 305 (539)
T 3afg_A 295 SKVITVGAVDK--------------------------------------------------------------------- 305 (539)
T ss_dssp SSSEEEEEECT---------------------------------------------------------------------
T ss_pred CceEEEeeecC---------------------------------------------------------------------
Confidence 89999998532
Q ss_pred EecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccC
Q 004113 411 CDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKP 490 (773)
Q Consensus 411 ~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 490 (773)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCC
Q 004113 491 APAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS 570 (773)
Q Consensus 491 ~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls 570 (773)
.+.++.||||||+. ++++||||+|||++|+++++..... .+.....|..++|||||||||||++|||+|++|+|+
T Consensus 306 ~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s 380 (539)
T 3afg_A 306 YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM---GQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWT 380 (539)
T ss_dssp TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC---SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC---CCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCC
Confidence 13688999999987 6999999999999999998652210 011113699999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCc
Q 004113 571 PSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPG 619 (773)
Q Consensus 571 ~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~ 619 (773)
+++||++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 381 ~~~vk~~L~~tA~~~~~~~----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 381 PDKVKTALIETADIVKPDE----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHHHHHSBCSSGGG----------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHHHHhhCccCCCCC----------CCccCccCCccCHHHHhhhc
Confidence 9999999999999876432 25678999999999999953
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=512.77 Aligned_cols=345 Identities=27% Similarity=0.315 Sum_probs=279.5
Q ss_pred CceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceeccccc
Q 004113 30 NGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHTT 109 (773)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~~~~~ 109 (773)
+.+|||+|++.. . .++++++.+.+++++|.. +++|+++++++++++|+++|+|++|++++.++++..
T Consensus 2 ~~~~iV~~~~~~-~-----------~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~ 68 (395)
T 2z2z_A 2 TIRVIVSVDKAK-F-----------NPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGK 68 (395)
T ss_dssp EEEEEEEECTTT-C-----------CHHHHHHTTCEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCE
T ss_pred cEEEEEEECCCc-c-----------HHHHHHHcCCEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCC
Confidence 568999999876 2 122334446789999986 999999999999999999999999999998876533
Q ss_pred cCc-----------cccCcccccccCCCCCCCCCCCCCCCC--cEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 004113 110 RSW-----------DFLKIQTDVLIDSVPSPSLNSQDQESD--TIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGN 176 (773)
Q Consensus 110 ~~~-----------~~~gl~~~~~~~~~~~~~~~~~~~G~G--v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~ 176 (773)
..+ ..|++.. +....+|..+ +|+| |+|||||||||++||+|.++
T Consensus 69 ~~~~~~~~~~~~~~~~w~~~~-----i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~----------------- 125 (395)
T 2z2z_A 69 PSWLGGGSTQPAQTIPWGIER-----VKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN----------------- 125 (395)
T ss_dssp ECC------CCSCCCCHHHHH-----TTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG-----------------
T ss_pred CCcccccccCccccCCcchhh-----cCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc-----------------
Confidence 221 1233322 1233689888 9999 99999999999999999742
Q ss_pred CCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC
Q 004113 177 DNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256 (773)
Q Consensus 177 ~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~ 256 (773)
+...++|..+... .+.....|..||||||||||+|.. + +..+.||||+|+|+.+|+++..
T Consensus 126 ----------~~~~~~~~~~~~~-~~~~~~~d~~gHGT~vAgiia~~~-n--------~~g~~GvAp~a~l~~~kv~~~~ 185 (395)
T 2z2z_A 126 ----------IAWCVSTLRGKVS-TKLRDCADQNGHGTHVIGTIAALN-N--------DIGVVGVAPGVQIYSVRVLDAR 185 (395)
T ss_dssp ----------EEEEEECGGGCCB-CCHHHHBCSSSHHHHHHHHHHCCC-S--------SSSCCCSSTTCEEEEEECSCTT
T ss_pred ----------cccCccccCCccc-CCCCCCCCCCCCHHHHHHHHHeec-C--------CCceEEECCCCEEEEEEEecCC
Confidence 2333333322100 000124678999999999999973 2 2335899999999999999887
Q ss_pred CCCCHHHHHHHHHHHhhC--------------------CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 004113 257 YGCTGSNILAAFDDAIAD--------------------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSA 316 (773)
Q Consensus 257 g~~~~~~i~~ai~~a~~~--------------------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aA 316 (773)
+.+..+++++||+||+++ +++|||||||.... ...+..++.++.++|++||+||
T Consensus 186 g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gv~vV~AA 259 (395)
T 2z2z_A 186 GSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD------DSYLYDMIIQAYNAGIVIVAAS 259 (395)
T ss_dssp SEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC------CHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC------CHHHHHHHHHHHHCCCEEEEEC
Confidence 667889999999999987 99999999997652 3567778889999999999999
Q ss_pred CCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCC
Q 004113 317 GNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDL 396 (773)
Q Consensus 317 GN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~ 396 (773)
||+|.....++...|++|+|||++.
T Consensus 260 GN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------------------------- 284 (395)
T 2z2z_A 260 GNEGAPSPSYPAAYPEVIAVGAIDS------------------------------------------------------- 284 (395)
T ss_dssp CSSCCSSCCBTTTSTTEEEEEEECT-------------------------------------------------------
T ss_pred CCCCCCCCCCccCCCCEEEEEEecC-------------------------------------------------------
Confidence 9999877777778899999998532
Q ss_pred CCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCce
Q 004113 397 DSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPV 476 (773)
Q Consensus 397 ~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~ 476 (773)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHH
Q 004113 477 ATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHIS 556 (773)
Q Consensus 477 ~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 556 (773)
.+.++.||++|| +|+|||++|+++++. +.|..++||||||||||
T Consensus 285 --------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~------------~~y~~~sGTS~AaP~Va 328 (395)
T 2z2z_A 285 --------------NDNIASFSNRQP----------EVSAPGVDILSTYPD------------DSYETLMGTAMATPHVS 328 (395)
T ss_dssp --------------TSCBCTTSCSSC----------SEEEECSSEEEEETT------------TEEEEEESHHHHHHHHH
T ss_pred --------------CCCCCcccCCCC----------CEEeCCCCeeeecCC------------CceEecCCHHHHHHHHH
Confidence 147889999998 679999999999987 88999999999999999
Q ss_pred HHHHHHHhhCC-------------CCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCC
Q 004113 557 GVVAAIKHQNP-------------TFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 557 G~aALl~~~~p-------------~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
|++|||+|++| .|++.+||++|++||+++...+ .+..||||+||+.+|++.
T Consensus 329 G~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g-----------~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 329 GVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG-----------WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS-----------SBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC-----------CCCCccCceeCHHHHHHH
Confidence 99999999999 9999999999999999986543 567899999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-56 Score=502.79 Aligned_cols=361 Identities=20% Similarity=0.262 Sum_probs=277.9
Q ss_pred CCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhC-CCCeEEEecCceeccc
Q 004113 29 KNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSK-KPGVVSIFPDPVLQLH 107 (773)
Q Consensus 29 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~-~p~V~~V~~~~~~~~~ 107 (773)
..+.|||++++.. .+.+++++.+.++++.|.. |++|+++++++++++|++ +|+|++|++++.+++.
T Consensus 43 ~~~~yiv~~~~~~------------~~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~ 109 (471)
T 3t41_A 43 EELYYSVEYKNTA------------TFNKLVKKKSLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCIT 109 (471)
T ss_dssp CCEEEEEEESCHH------------HHHHHHHHHTCEEEEEEGG-GTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBC
T ss_pred CceEEEEEcCCHH------------HHHHHHHhCCCEEEEecCC-ccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccc
Confidence 4567899776544 3445555566788999966 999999999999999999 9999999999888775
Q ss_pred cccCc----------cccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 004113 108 TTRSW----------DFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGND 177 (773)
Q Consensus 108 ~~~~~----------~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~ 177 (773)
..... ..|++.... ....+|..+.+|+||+|||||||||++||+|.+.. |.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~w~l~~i~----~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~------ 172 (471)
T 3t41_A 110 SEKTIDRTSNESLFSRQWDMNKIT----NNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDS------ 172 (471)
T ss_dssp CCCCCCC---CCSCCCCHHHHTTT----TTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC------
T ss_pred cccccccCCCCccccccccHhhcc----CcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccCC------
Confidence 43321 123333221 11258999999999999999999999999998631 1110
Q ss_pred CCcccCCceeEeeeeccccccc-cCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC
Q 004113 178 NVSFSCNRKIIGARFYDIEDDV-VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE 256 (773)
Q Consensus 178 f~~~~~n~ki~~~~~~~~~~~~-~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~ 256 (773)
..++....|...... ..+...+.|..||||||||||+|++ .+.||||+|+|+.+|+++..
T Consensus 173 -------~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~ 233 (471)
T 3t41_A 173 -------KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSK 233 (471)
T ss_dssp -------EECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSS
T ss_pred -------cccccCCCccCCCcccCCCCCCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCC
Confidence 011111111111000 0122356789999999999999863 15899999999999999875
Q ss_pred CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCC---C-------CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC-
Q 004113 257 YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIV---R-------PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS- 325 (773)
Q Consensus 257 g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~---~-------~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~- 325 (773)
.+...++++||+||++++++|||||||...... . ....+.+..++.++.++|++||+||||+|.....
T Consensus 234 -~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~ 312 (471)
T 3t41_A 234 -KTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDK 312 (471)
T ss_dssp -CCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCH
T ss_pred -CCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcc
Confidence 788999999999999999999999999732100 0 0123567778888999999999999999976432
Q ss_pred -----------------cccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCcccc
Q 004113 326 -----------------VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANE 388 (773)
Q Consensus 326 -----------------~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 388 (773)
.+...+++|+|||++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~----------------------------------------------- 345 (471)
T 3t41_A 313 QKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ----------------------------------------------- 345 (471)
T ss_dssp HHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT-----------------------------------------------
T ss_pred cccccccccccCCceeeccccCCCeEEEEeeCC-----------------------------------------------
Confidence 4456688888888532
Q ss_pred ccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHH
Q 004113 389 NAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAY 468 (773)
Q Consensus 389 ~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 468 (773)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCcc----------------------EEeeec
Q 004113 469 INSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN----------------------ILAAWM 526 (773)
Q Consensus 469 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~----------------------I~sa~~ 526 (773)
.+.++.||++||+. |||+|||++ |+++++
T Consensus 346 ----------------------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~ 396 (471)
T 3t41_A 346 ----------------------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTAN 396 (471)
T ss_dssp ----------------------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECT
T ss_pred ----------------------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCC
Confidence 24688999999964 599999987 899988
Q ss_pred CCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 004113 527 GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNP-TFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDF 605 (773)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 605 (773)
. +.|..++|||||||||||++|||+|++| +++|++||++|++||++.... ++..|
T Consensus 397 ~------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~~------------~~~~~ 452 (471)
T 3t41_A 397 N------------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNK------------PFSRY 452 (471)
T ss_dssp T------------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSCC------------CHHHH
T ss_pred C------------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCCC------------CcCcc
Confidence 7 7899999999999999999999999999 899999999999999987542 67899
Q ss_pred CcccccccccCCCc
Q 004113 606 GAGEVSTTASLQPG 619 (773)
Q Consensus 606 G~G~id~~~A~~~~ 619 (773)
|||+||+.+|++..
T Consensus 453 G~G~vd~~~Al~~a 466 (471)
T 3t41_A 453 GHGELDVYKALNVA 466 (471)
T ss_dssp TTCBBCHHHHTTTT
T ss_pred ccChhCHHHHHHHH
Confidence 99999999999853
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=498.97 Aligned_cols=375 Identities=22% Similarity=0.248 Sum_probs=274.8
Q ss_pred CCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCH----HHHHHHhC--CCCeEEEec
Q 004113 27 GSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSA----EEAHALSK--KPGVVSIFP 100 (773)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~----~~i~~L~~--~p~V~~V~~ 100 (773)
+..+++|||+|++.. . .+++++..+.++++++.. +++++++++. +.+++|++ +|+|++|||
T Consensus 28 ~~~~~~~IV~~k~~~-~-----------~~~~~~~~g~~v~~~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vep 94 (671)
T 1r6v_A 28 EYTEGKILVGYNDRS-E-----------VDKIVKAVNGKVVLELPQ-IKVVSIKLNGMTVKQAYDKIKALALKGIRYVEP 94 (671)
T ss_dssp SBCTTEEEEEESSHH-H-----------HHHHHHHHTCEEEEEEGG-GTEEEEECSSCCHHHHHHHHTTSCCSSEEEEEC
T ss_pred ccCCccEEEEECCCc-C-----------HHHHHHhcCCeEEEEcCC-CcEEEEEeCCcCHHHHHHHHHhccCCCceEEec
Confidence 346899999999766 1 122223334577888876 8999999864 33567764 899999999
Q ss_pred Cceecccccc----C-----------------------ccccCcccccccCCCCCCC-CCCCCCCCCcEEEEEccCCCCC
Q 004113 101 DPVLQLHTTR----S-----------------------WDFLKIQTDVLIDSVPSPS-LNSQDQESDTIIGILDTGVWPE 152 (773)
Q Consensus 101 ~~~~~~~~~~----~-----------------------~~~~gl~~~~~~~~~~~~~-~~~~~~G~Gv~VaVIDtGid~~ 152 (773)
+..+++.... . ...|++.. +....+ |+. .+|+||+|||||||||++
T Consensus 95 d~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~-----I~~~~a~w~~-~tG~gV~VAVIDTGVd~~ 168 (671)
T 1r6v_A 95 SYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEA-----IGVTQQLWEE-ASGTNIIVAVVDTGVDGT 168 (671)
T ss_dssp CBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHH-----TTCCHHHHHH-CSCTTCEEEEEESCCBTT
T ss_pred CeEEEeccccccCcccccccccccccccccccccccccccCCchhc-----cCCchhhhhc-cCCCCCEEEEEeCCCCCC
Confidence 9766543100 0 01122221 122345 877 899999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccc
Q 004113 153 SESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYG 232 (773)
Q Consensus 153 Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G 232 (773)
||+|.++- +. +.+.+.+... ....+..|..||||||||||||.. +
T Consensus 169 HpdL~~~~-------~~-------------------g~~~~~~~~~--p~~~d~~d~~gHGThVAGiIAa~~-n------ 213 (671)
T 1r6v_A 169 HPDLEGQV-------IA-------------------GYRPAFDEEL--PAGTDSSYGGSAGTHVAGTIAAKK-D------ 213 (671)
T ss_dssp SGGGTTTB-------CC-------------------EEEGGGTEEE--CTTCBCCTTCSHHHHHHHHHHCCC-S------
T ss_pred CccccccE-------Ee-------------------cccccCCCcC--CCCCCCccCCCcchhhhhhhhccC-C------
Confidence 99998531 11 1111111000 001234467899999999999974 2
Q ss_pred cccceeeeccCCceEEEEEeecC------CCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHH
Q 004113 233 LAAGTAIGGSPGSRIAVYRVCSP------EYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAV 306 (773)
Q Consensus 233 ~~~~~~~GvAP~A~l~~~kv~~~------~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~ 306 (773)
+..+.||||+|+|+.+|+++. .+......+++||+||+++|++|||||||... ....+..++.+|.
T Consensus 214 --g~gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~------~s~~l~~Ai~~A~ 285 (671)
T 1r6v_A 214 --GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG------YSYTMKEAFDYAM 285 (671)
T ss_dssp --SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC------CCHHHHHHHHHHH
T ss_pred --CCceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC------CCHHHHHHHHHHH
Confidence 233589999999999999986 22244567899999999999999999999754 2367788889999
Q ss_pred hCCcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCc
Q 004113 307 EHGITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDD 385 (773)
Q Consensus 307 ~~Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~ 385 (773)
++|+++|+||||+|... ..++...|++|+|||++.+..
T Consensus 286 ~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~----------------------------------------- 324 (671)
T 1r6v_A 286 EHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG----------------------------------------- 324 (671)
T ss_dssp HTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-----------------------------------------
T ss_pred hCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC-----------------------------------------
Confidence 99999999999999764 455667799999998643210
Q ss_pred cccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHH
Q 004113 386 ANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEI 465 (773)
Q Consensus 386 ~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l 465 (773)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCC------CCCCCCC
Q 004113 466 LAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGE------APEGKEP 539 (773)
Q Consensus 466 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~------~~~~~~~ 539 (773)
...++.||++||.. ||+|||++|+++++...... .+.....
T Consensus 325 -------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~ 371 (671)
T 1r6v_A 325 -------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG 371 (671)
T ss_dssp -------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS
T ss_pred -------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCC
Confidence 01478999999975 99999999999987532110 0011223
Q ss_pred CcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCc
Q 004113 540 PLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPG 619 (773)
Q Consensus 540 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~ 619 (773)
+.|..++|||||||||||++|||+|++|++++.+||++|++||+++...+ .+..||||+||+.+|++..
T Consensus 372 ~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g-----------~d~~~G~G~vna~~Al~~~ 440 (671)
T 1r6v_A 372 GTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-----------WDHDTGYGLVKLDAALQGP 440 (671)
T ss_dssp CCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-----------CBTTTBTCBCCHHHHHHCC
T ss_pred CceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC-----------CCCCcccceeCHHHHhhhh
Confidence 57999999999999999999999999999999999999999999886543 4678999999999999987
Q ss_pred eeecCCchh
Q 004113 620 LVYETTTLD 628 (773)
Q Consensus 620 lv~~~~~~~ 628 (773)
+..+....+
T Consensus 441 l~~~~~~~~ 449 (671)
T 1r6v_A 441 LPTQGGVEE 449 (671)
T ss_dssp CCSSSEEEE
T ss_pred cCCCCCccc
Confidence 766544433
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=484.06 Aligned_cols=382 Identities=24% Similarity=0.297 Sum_probs=278.2
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 128 SPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 128 ~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
..+|+.+ |+||+|||||||||++||+|.+. .| ..+++... .+...+.
T Consensus 14 ~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------~~--------------------~~~~~~~~----~~~~~~~ 60 (441)
T 1y9z_A 14 TVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------NV--------------------TGTNNSGT----GNWYQPG 60 (441)
T ss_dssp SSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------EE--------------------EECCCTTS----CCTTCCC
T ss_pred hhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------cc--------------------cCcccCCC----CCCCCCC
Confidence 3688764 77999999999999999999742 11 11111111 0113467
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCc--eEEEEEeecCCCCCCHHHHHHHHHHHhhC-CCcEEEeccC
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGS--RIAVYRVCSPEYGCTGSNILAAFDDAIAD-GVDVLSLSLG 284 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A--~l~~~kv~~~~g~~~~~~i~~ai~~a~~~-g~dVIN~SlG 284 (773)
|..||||||||||+|... +..+.||||+| +|+.+|+++..+.+..+++++||+||+++ |++|||||||
T Consensus 61 d~~gHGT~vAgiia~~~~---------~~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G 131 (441)
T 1y9z_A 61 NNNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (441)
T ss_dssp SSCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCcHHHHHHHHhcccC---------CCCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 889999999999999752 22368999995 99999999987567888999999999999 9999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECC-----------
Q 004113 285 GSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGG----------- 353 (773)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~----------- 353 (773)
.... ...+..++.++.++|++||+||||+|.....++...+++|+|||++.+.....+...+.
T Consensus 132 ~~~~------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i 205 (441)
T 1y9z_A 132 GSGS------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAI 205 (441)
T ss_dssp BSCC------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSE
T ss_pred CCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCe
Confidence 7652 24567778889999999999999999877777778899999999987754332222221
Q ss_pred --------ce----EEeeeeeccCCC-CCCCcee--eEEcCCCCcCccccccccCCCCC--CcccccccceEEEEecCCC
Q 004113 354 --------NK----VIKGESINFSNL-QKSPVYP--LIYAKSAKKDDANENAARNCDLD--SLAGALVKGKIVLCDNDDD 416 (773)
Q Consensus 354 --------~~----~~~g~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~gki~l~~~~~~ 416 (773)
+. ++.|.+++.... +....++ +.+..... ..........|... .++..+++|||++|+|+.+
T Consensus 206 ~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~ 284 (441)
T 1y9z_A 206 LSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPI-NASATGALAECTVNGTSFSCGNMANKICLVERVGN 284 (441)
T ss_dssp EEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCC-CCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSC
T ss_pred eccccCCCcccceeecccccccccccCcccccccCCcccccccc-ccccccchhccccccccccCCCccccEEEEecccc
Confidence 11 122222221110 0000000 01111000 00111223457754 5678899999999999865
Q ss_pred ---CCchhhhhcccccCCceEEEEEeCCCc-c-------ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeee
Q 004113 417 ---MGSVVDKKDGVKSLGGVGVIVIDDQSR-A-------VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSV 485 (773)
Q Consensus 417 ---~~~~~~k~~~~~~~Ga~g~i~~~~~~~-~-------~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~ 485 (773)
...+.+|..+++++|+.|+|++++... . .......+|.+.++.++|+.|+.|+.+. .+
T Consensus 285 ~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t------- 353 (441)
T 1y9z_A 285 QGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TT------- 353 (441)
T ss_dssp SSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EE-------
T ss_pred CcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cc-------
Confidence 357788999999999999999998652 1 1234568999999999999999875321 10
Q ss_pred ecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh
Q 004113 486 TKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ 565 (773)
Q Consensus 486 ~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 565 (773)
+ ++... +.|..++|||||||||||++|||+|+
T Consensus 354 ----------------------------~--------~~~~~------------~~y~~~sGTSmAaP~VAG~aALl~~~ 385 (441)
T 1y9z_A 354 ----------------------------V--------SNQGN------------QDYEYYNGTSMATPHVSGVATLVWSY 385 (441)
T ss_dssp ----------------------------E--------EEEEE------------ESEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------c--------ccccC------------CCceeecccccCCcccchHHHHHHHH
Confidence 0 11222 68999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCceeecCCchhhhccccccCCC
Q 004113 566 NPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYD 639 (773)
Q Consensus 566 ~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~ 639 (773)
||+|+|++||++||+||++++..+ ++.+||+|+||+.+|+ ||+.|||.+++.
T Consensus 386 ~p~~sp~~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 386 HPECSASQVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp CTTSCHHHHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred CCCCCHHHHHHHHHhhchhhccCC-----------CcccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 999999999999999999987654 4568999999999995 589999998764
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=510.50 Aligned_cols=339 Identities=20% Similarity=0.226 Sum_probs=57.4
Q ss_pred ceEEEEeccCCCCCCCchhHHHHHHHHHhccc--CccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceecccc
Q 004113 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWK--KNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQLHT 108 (773)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~~~~ 108 (773)
++|||+|+++. . ......+.+.+....... ..++++.|+..|+||+++++++++++|+++|+|++||+++.+..+.
T Consensus 76 g~YIV~lk~~~-~-~~~~~~~~~~l~a~~~~~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~ 153 (692)
T 2p4e_P 76 GTYVVVLKEET-H-LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS 153 (692)
T ss_dssp EEEEEEECTTC-C-HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC-
T ss_pred CcEEEEECCCC-C-HHHHHHHHHHHHHHHhhcccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC
Confidence 59999999888 4 222233334444433222 3689999999999999999999999999999999999999876522
Q ss_pred ccCccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeE
Q 004113 109 TRSWDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKII 188 (773)
Q Consensus 109 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~ 188 (773)
.+ |++......... ...|..+.+|+||+|||||||||++||+|.+... |. +|+
T Consensus 154 -~p---WgL~~i~~~~~~-~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~~--------- 206 (692)
T 2p4e_P 154 -IP---WNLERITPPRYR-ADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DFE--------- 206 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CC---cchhhccccccc-ccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------ccc---------
Confidence 22 444443211111 2378888999999999999999999999986411 10 110
Q ss_pred eeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHH
Q 004113 189 GARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAF 268 (773)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai 268 (773)
.+.+.+.. .....+.|..||||||||||+|+. .||||+|+|+.+|+++..+.++.+++++||
T Consensus 207 ---~~~d~dg~-~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI 268 (692)
T 2p4e_P 207 ---NVPEEDGT-RFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGL 268 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---cccCCCCC-cccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHH
Confidence 00000000 000345688999999999999873 799999999999999988678889999999
Q ss_pred HHHhhC------CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cccCCCcEEEEccccc
Q 004113 269 DDAIAD------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS-VVNFAPWIFTVAASTI 341 (773)
Q Consensus 269 ~~a~~~------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~-~~~~~p~vitVga~~~ 341 (773)
+|++++ +++|||||||+.. . ..+..++.++.++|++||+||||+|.+... .+...|++|+|||++.
T Consensus 269 ~~a~~~~~~~~~g~~VINmSlGg~~---s----~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~ 341 (692)
T 2p4e_P 269 EFIRKSQLVQPVGPLVVLLPLAGGY---S----RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNA 341 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhcccCCceEEEecCCCCC---c----HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcC
Confidence 999986 8999999999754 3 344455588889999999999999976533 3556799999999654
Q ss_pred CcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchh
Q 004113 342 DRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVV 421 (773)
Q Consensus 342 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~ 421 (773)
+...
T Consensus 342 ~~~~---------------------------------------------------------------------------- 345 (692)
T 2p4e_P 342 QDQP---------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCc----------------------------------------------------------------------------
Confidence 2100
Q ss_pred hhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCC
Q 004113 422 DKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARG 501 (773)
Q Consensus 422 ~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 501 (773)
...-+.||++|
T Consensus 346 ---------------------------------------------------------------------a~~ss~fSn~G 356 (692)
T 2p4e_P 346 ---------------------------------------------------------------------VTLGTLGTNFG 356 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------cccccccCCCC
Confidence 00012389999
Q ss_pred CCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 502 PSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 502 p~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
| ||||+|||++|+++++... +.|..++|||||||||||++|||++++|+|+|++||++|++|
T Consensus 357 ~--------~vDI~APG~~I~St~~~~~----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~t 418 (692)
T 2p4e_P 357 R--------CVDLFAPGEDIIGASSDCS----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHF 418 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C--------ceeEEecCCcEEeeccCCC----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 8 5699999999999997622 578999999999999999999999999999999999999999
Q ss_pred ccccC
Q 004113 582 ATQTN 586 (773)
Q Consensus 582 A~~~~ 586 (773)
|.+..
T Consensus 419 A~~~~ 423 (692)
T 2p4e_P 419 SAKDV 423 (692)
T ss_dssp -----
T ss_pred ccccc
Confidence 98753
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=430.71 Aligned_cols=258 Identities=29% Similarity=0.362 Sum_probs=214.7
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|+.+..|+||+|||||||||++||+|.+ +++..++|.++. ..+.|
T Consensus 22 ~aw~~~~g~~gv~VaViDtGvd~~hp~l~~---------------------------~~~~~~~~~~~~------~~~~d 68 (280)
T 1dbi_A 22 YAWDVTKGSSGQEIAVIDTGVDYTHPDLDG---------------------------KVIKGYDFVDND------YDPMD 68 (280)
T ss_dssp HHTTTCCCCTTCEEEEEESCCCTTSTTTTT---------------------------TEEEEEETTTTB------SCCCC
T ss_pred HHHhhcCCCCCCEEEEEeCCcCCCChhhcc---------------------------CcccceeccCCC------CCCCC
Confidence 689998888899999999999999999974 234455555432 34678
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+.+..+++++||+||+++|++|||||||...
T Consensus 69 ~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~- 139 (280)
T 1dbi_A 69 LNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC- 139 (280)
T ss_dssp SSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred CCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 8999999999999976432 2358999999999999998876788999999999999999999999999864
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
....+..++.++.++|+++|+||||+|......+...+++|+|||++.
T Consensus 140 -----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------- 187 (280)
T 1dbi_A 140 -----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ--------------------------- 187 (280)
T ss_dssp -----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT---------------------------
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC---------------------------
Confidence 236677888999999999999999999776666777899999998532
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 188 ------------------------------------------~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~- 216 (280)
T 1dbi_A 188 ------------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG- 216 (280)
T ss_dssp ------------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT-
T ss_pred ------------------------------------------CCCcCCCCCCCCCc--------eEEEecCCeEeecCC-
Confidence 13678999999854 999999999999987
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
+.|..++|||||||||||++|||++ |.+++.+||++|++||+++.. ....||+|
T Consensus 217 -----------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------------~~~~~G~G 270 (280)
T 1dbi_A 217 -----------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------------TGTYFKYG 270 (280)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT-------------BTTTBSSE
T ss_pred -----------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC-------------CCCcccCC
Confidence 8899999999999999999999987 899999999999999998764 23579999
Q ss_pred cccccccCC
Q 004113 609 EVSTTASLQ 617 (773)
Q Consensus 609 ~id~~~A~~ 617 (773)
+||+.+|++
T Consensus 271 ~vn~~~A~~ 279 (280)
T 1dbi_A 271 RINSYNAVT 279 (280)
T ss_dssp ECCHHHHHT
T ss_pred EECHHHHhc
Confidence 999999986
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-51 Score=429.05 Aligned_cols=255 Identities=29% Similarity=0.408 Sum_probs=219.4
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+++|+||+|+|||||| .+||+|+. ...++|..+. ..+.|
T Consensus 15 ~a~~~g~~G~gv~VaViDtGi-~~h~~l~~-----------------------------~~~~~~~~~~------~~~~d 58 (269)
T 1gci_A 15 AAHNRGLTGSGVKVAVLDTGI-STHPDLNI-----------------------------RGGASFVPGE------PSTQD 58 (269)
T ss_dssp HHHHTTCSCTTCEEEEEESCC-CCCTTCCE-----------------------------EEEEECSTTC------CSCSC
T ss_pred HHHhcCCCCCCCEEEEECCCC-CCCHhhcc-----------------------------cCCcccCCCC------CCCCC
Confidence 589999999999999999999 89999941 2233343321 34578
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..||||||||||+|.. +...+.||||+|+|+.+|+++..+.+..+++++||+|+++++++|||||||....
T Consensus 59 ~~gHGT~vAgiia~~~---------~~~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~~ 129 (269)
T 1gci_A 59 GNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP 129 (269)
T ss_dssp SSSHHHHHHHHHHCCC---------SSSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSC
T ss_pred CCCChHHHHHHHhcCc---------CCCCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 8999999999999973 2233589999999999999988767788999999999999999999999998652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
...+..+++++.++|+++|+||||+|......+...+++|+||+++.
T Consensus 130 ------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------- 176 (269)
T 1gci_A 130 ------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ--------------------------- 176 (269)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT---------------------------
T ss_pred ------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC---------------------------
Confidence 35677888999999999999999999877777777899999998532
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 177 ------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~- 205 (269)
T 1gci_A 177 ------------------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG- 205 (269)
T ss_dssp ------------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT-
T ss_pred ------------------------------------------CCCCCCCCCCCCCc--------ceEecCCCeEeecCC-
Confidence 13678999999964 999999999999987
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. ++..||+|
T Consensus 206 -----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g--------------~~~~~G~G 260 (269)
T 1gci_A 206 -----------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSG 260 (269)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTC
T ss_pred -----------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC--------------CCCCcccC
Confidence 88999999999999999999999999999999999999999999874 35689999
Q ss_pred cccccccCC
Q 004113 609 EVSTTASLQ 617 (773)
Q Consensus 609 ~id~~~A~~ 617 (773)
+||+.+|++
T Consensus 261 ~vn~~~A~~ 269 (269)
T 1gci_A 261 LVNAEAATR 269 (269)
T ss_dssp BCCHHHHTC
T ss_pred ccCHHHHcC
Confidence 999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=432.03 Aligned_cols=256 Identities=26% Similarity=0.417 Sum_probs=216.9
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+++|+||+|||||||||++||+|+. ...++|..+. ....|
T Consensus 15 ~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~~------~~~~d 59 (274)
T 1r0r_E 15 KVQAQGFKGANVKVAVLDTGIQASHPDLNV-----------------------------VGGASFVAGE------AYNTD 59 (274)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECSTTC------CTTCC
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCCHhHcC-----------------------------CCCccccCCC------CCCCC
Confidence 589999999999999999999999999941 2223333221 33567
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|.. +...+.||||+|+|+.+|++...+.+..++++++|+|+++++++|||||||....
T Consensus 60 ~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~ 130 (274)
T 1r0r_E 60 GNGHGTHVAGTVAALD---------NTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG 130 (274)
T ss_dssp SSSHHHHHHHHHHCCS---------SSSBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC
T ss_pred CCCCHHHHHHHHHccC---------CCCceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC
Confidence 8999999999999973 2233589999999999999988766788899999999999999999999998652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeecc
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS----GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 364 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~ 364 (773)
...+..++.++.++|+++|+||||+|... ...+...|++|+||+++.
T Consensus 131 ------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 181 (274)
T 1r0r_E 131 ------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS----------------------- 181 (274)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT-----------------------
T ss_pred ------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC-----------------------
Confidence 36778888999999999999999999753 334455688899988532
Q ss_pred CCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc
Q 004113 365 SNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA 444 (773)
Q Consensus 365 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 444 (773)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEee
Q 004113 445 VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAA 524 (773)
Q Consensus 445 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa 524 (773)
.+.++.||++||. |||+|||++|+++
T Consensus 182 ----------------------------------------------~~~~~~~S~~G~~--------~di~APG~~i~s~ 207 (274)
T 1r0r_E 182 ----------------------------------------------NSNRASFSSVGAE--------LEVMAPGAGVYST 207 (274)
T ss_dssp ----------------------------------------------TSCBCTTCCCSTT--------EEEEEECSSEEEE
T ss_pred ----------------------------------------------CCCcCccCCCCCC--------ceEEeCCCCeEee
Confidence 1367899999984 4999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYD 604 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 604 (773)
++. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++. ++..
T Consensus 208 ~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~ 261 (274)
T 1r0r_E 208 YPT------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFY 261 (274)
T ss_dssp ETT------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHH
T ss_pred cCC------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC--------------CCCC
Confidence 987 88999999999999999999999999999999999999999999874 4578
Q ss_pred CCcccccccccCC
Q 004113 605 FGAGEVSTTASLQ 617 (773)
Q Consensus 605 ~G~G~id~~~A~~ 617 (773)
||+|+||+.+|++
T Consensus 262 ~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 262 YGKGLINVEAAAQ 274 (274)
T ss_dssp HTTCBCCHHHHTC
T ss_pred cccCccCHHHHhC
Confidence 9999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=429.02 Aligned_cols=258 Identities=27% Similarity=0.418 Sum_probs=217.4
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+++|+||+|||||||||++||+|+. ...++|..+. .....|
T Consensus 15 ~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~~-----~~~~~d 60 (281)
T 1to2_E 15 ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPSE-----TNPFQD 60 (281)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTTC-----CCTTCC
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCCC-----CCCCCC
Confidence 589999999999999999999999999952 1222332221 122367
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|.. +...+.||||+|+|+.+|++...+.+..++++++|+|+++++++|||||||....
T Consensus 61 ~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~ 131 (281)
T 1to2_E 61 NNSHGTHVAGTVAALN---------NSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSG 131 (281)
T ss_dssp SSSHHHHHHHHHHCCS---------SSSSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSCC
T ss_pred CCCcHHHHHHHHhccC---------CCCcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCCC
Confidence 8999999999999973 2233589999999999999988766788999999999999999999999998652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeecc
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS----GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 364 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~ 364 (773)
...+..+++++.++|++||+||||+|... ...+...|++|+|||++.
T Consensus 132 ------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~----------------------- 182 (281)
T 1to2_E 132 ------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS----------------------- 182 (281)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-----------------------
T ss_pred ------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC-----------------------
Confidence 36778888999999999999999999752 334455688999987532
Q ss_pred CCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc
Q 004113 365 SNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA 444 (773)
Q Consensus 365 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 444 (773)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEee
Q 004113 445 VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAA 524 (773)
Q Consensus 445 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa 524 (773)
.+.++.||++||. |||+|||++|+++
T Consensus 183 ----------------------------------------------~~~~~~fS~~G~~--------~di~APG~~i~s~ 208 (281)
T 1to2_E 183 ----------------------------------------------SNQRASFSSVGPE--------LDVMAPGVSIQST 208 (281)
T ss_dssp ----------------------------------------------TSCBCTTCCCSTT--------CCEEEECSSEEEE
T ss_pred ----------------------------------------------CCCcCCcCCCCCC--------ceEEecCCCeEee
Confidence 1367899999995 4999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYD 604 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 604 (773)
++. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. +++.
T Consensus 209 ~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~ 262 (281)
T 1to2_E 209 LPG------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFY 262 (281)
T ss_dssp ETT------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHH
T ss_pred cCC------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC--------------CCCC
Confidence 987 88999999999999999999999999999999999999999999874 4578
Q ss_pred CCcccccccccCCC
Q 004113 605 FGAGEVSTTASLQP 618 (773)
Q Consensus 605 ~G~G~id~~~A~~~ 618 (773)
||||+||+.+|+++
T Consensus 263 ~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 263 YGKGLINVQAAAQH 276 (281)
T ss_dssp HTTCBCCHHHHTSS
T ss_pred cccceecHHHHhhh
Confidence 99999999999985
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=440.30 Aligned_cols=263 Identities=25% Similarity=0.379 Sum_probs=216.2
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|+.+++|+||+|||||||||++||+|.+ ++...++|..++. .+.....|
T Consensus 32 ~aw~~~~~G~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~~--~~~~~~~d 82 (327)
T 2x8j_A 32 AVWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTDYG--GDETNFSD 82 (327)
T ss_dssp HHHHHHGGGTTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSGGG--GCTTCCCC
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCCCC--CCCCCCCC
Confidence 589999999999999999999999999974 3444455544321 01123578
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh------CCCcEEEec
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA------DGVDVLSLS 282 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~------~g~dVIN~S 282 (773)
..||||||||||+|.. ++..+.||||+|+|+.+|+++..+.+..+++++||+||++ .+++|||||
T Consensus 83 ~~gHGT~VAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S 153 (327)
T 2x8j_A 83 NNGHGTHVAGTVAAAE---------TGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMS 153 (327)
T ss_dssp SSSHHHHHHHHHHCCC---------CSSBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEEC
T ss_pred CCCchHHHHHHHhccC---------CCCCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEEEC
Confidence 8999999999999974 2233689999999999999988766788999999999999 899999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC-----CCcccCCCcEEEEcccccCcceeeEEEECCceEE
Q 004113 283 LGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS-----GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVI 357 (773)
Q Consensus 283 lG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~ 357 (773)
||.... ...+..++.++.++|++||+||||+|... ...+...+++|+|||++.
T Consensus 154 ~G~~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~---------------- 211 (327)
T 2x8j_A 154 LGGPTD------SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF---------------- 211 (327)
T ss_dssp EEBSCC------CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT----------------
T ss_pred CCcCCC------CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC----------------
Confidence 997652 36677888899999999999999999652 344556689999998532
Q ss_pred eeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEE
Q 004113 358 KGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIV 437 (773)
Q Consensus 358 ~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~ 437 (773)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeC
Q 004113 438 IDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAP 517 (773)
Q Consensus 438 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~AP 517 (773)
.+.++.||++||. |||+||
T Consensus 212 -----------------------------------------------------~~~~~~fS~~G~~--------~di~AP 230 (327)
T 2x8j_A 212 -----------------------------------------------------DLRLSDFTNTNEE--------IDIVAP 230 (327)
T ss_dssp -----------------------------------------------------TCCBSCC---CCC--------CSEEEE
T ss_pred -----------------------------------------------------CCCCCCccCCCCC--------ceEecC
Confidence 1367899999984 599999
Q ss_pred CccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcccccCCCCCcc
Q 004113 518 GVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ-----NPTFSPSEIKSAVMTTATQTNNLRAPI 592 (773)
Q Consensus 518 G~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~p~ls~~~Ik~~L~~TA~~~~~~g~~~ 592 (773)
|++|+++++. +.|..++|||||||+|||++|||+|+ +|.+++.+||++|++||+++..
T Consensus 231 G~~i~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~----- 293 (327)
T 2x8j_A 231 GVGIKSTYLD------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF----- 293 (327)
T ss_dssp CSSEEEECST------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS-----
T ss_pred cCceEeecCC------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC-----
Confidence 9999999987 78999999999999999999999999 9999999999999999998742
Q ss_pred ccCCCCCCCCCCCCcccccccccCC
Q 004113 593 TTNSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 593 ~~~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
++..||+|+||+.+|++
T Consensus 294 --------~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 294 --------TAQAEGNGFLTLDLVER 310 (327)
T ss_dssp --------CHHHHTTCEECTTHHHH
T ss_pred --------CCCceeeeEECHHHHHH
Confidence 56789999999999998
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-50 Score=423.44 Aligned_cols=257 Identities=28% Similarity=0.398 Sum_probs=220.2
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|+.. +|+||+|||||||||++||+|.+ +++..++|.++. ..+.|
T Consensus 22 ~aw~~~-~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~~------~~~~d 67 (279)
T 1thm_A 22 QAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDND------STPQN 67 (279)
T ss_dssp HHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTTB------SCCCC
T ss_pred HHHhcC-CCCCCEEEEEccCCCCCCcchhc---------------------------CccccccccCCC------CCCCC
Confidence 588876 69999999999999999999974 344455555432 44678
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+.+..+++++||+||++++++|||||||....
T Consensus 68 ~~gHGT~vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~ 139 (279)
T 1thm_A 68 GNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVG 139 (279)
T ss_dssp SSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSC
T ss_pred CCCcHHHHHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence 8999999999999986432 23589999999999999988767888999999999999999999999998652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
...+..++.++.++|+++|+||||+|.....++...+++|+|||++.
T Consensus 140 ------~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------- 186 (279)
T 1thm_A 140 ------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ--------------------------- 186 (279)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT---------------------------
T ss_pred ------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC---------------------------
Confidence 36778888999999999999999999877777777899999998532
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 187 ------------------------------------------~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~- 215 (279)
T 1thm_A 187 ------------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT- 215 (279)
T ss_dssp ------------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT-
T ss_pred ------------------------------------------CCCcCCcCCCCCce--------EEEEcCCCeEEEeCC-
Confidence 13678999999854 999999999999987
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
+.|..++|||||||||||++||| ++|.+++++||++|++||+++... ...||+|
T Consensus 216 -----------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-------------~~~~G~G 269 (279)
T 1thm_A 216 -----------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-------------GTYWAKG 269 (279)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-------------TTTBSSE
T ss_pred -----------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-------------CccccCC
Confidence 88999999999999999999999 579999999999999999998653 2579999
Q ss_pred cccccccCC
Q 004113 609 EVSTTASLQ 617 (773)
Q Consensus 609 ~id~~~A~~ 617 (773)
+||+.+|++
T Consensus 270 ~vn~~~A~~ 278 (279)
T 1thm_A 270 RVNAYKAVQ 278 (279)
T ss_dssp ECCHHHHHH
T ss_pred eeCHHHHhc
Confidence 999999975
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-52 Score=454.46 Aligned_cols=302 Identities=18% Similarity=0.215 Sum_probs=196.1
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCcee-----EeeeeccccccccCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKI-----IGARFYDIEDDVVANG 203 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki-----~~~~~~~~~~~~~~~~ 203 (773)
++|+.+..|++|+|||||||||++||+|.+....+....|+..++....... ..+..+ .+............+.
T Consensus 22 ~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (357)
T 4h6x_A 22 DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDY-AAFQSIRDQGLKGKEKEEALEAVIPDT 100 (357)
T ss_dssp HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHH-HHHHHHHHHTCCSHHHHHHHHHHCTTT
T ss_pred HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccc-cccccccCccccccccccccccccCCC
Confidence 5899999899999999999999999999976655555566544432210000 000000 0000000000000111
Q ss_pred CCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-----CCCCHHHHHHHHHHHhhCCCcE
Q 004113 204 QSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-----YGCTGSNILAAFDDAIADGVDV 278 (773)
Q Consensus 204 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-----g~~~~~~i~~ai~~a~~~g~dV 278 (773)
..+.|.+||||||||||+|+. +..+.||||+|+|+.+|++... +.....+++++|+|+++.|++|
T Consensus 101 ~~~~D~~gHGThVAGiiag~~----------~~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~V 170 (357)
T 4h6x_A 101 KDRIVLNDHACHVTSTIVGQE----------HSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANI 170 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCT----------TSSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSE
T ss_pred CCCcCCCCcHHHHHHHHhccC----------CCCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCE
Confidence 234467799999999999974 2236899999999999997543 1234567899999999999999
Q ss_pred EEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEe
Q 004113 279 LSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIK 358 (773)
Q Consensus 279 IN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~ 358 (773)
||||||.... .....+.+..++.++.++|+++|+||||+|.....++...|++|+|||++.
T Consensus 171 in~S~G~~~~--~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----------------- 231 (357)
T 4h6x_A 171 IHCAFCRPTQ--TSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV----------------- 231 (357)
T ss_dssp EEEC-------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT-----------------
T ss_pred EeeccccCCc--cccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc-----------------
Confidence 9999998653 345567888888999999999999999999877777777899999998542
Q ss_pred eeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEE
Q 004113 359 GESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVI 438 (773)
Q Consensus 359 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~ 438 (773)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCC
Q 004113 439 DDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPG 518 (773)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG 518 (773)
.+.++.||+||+. ..||||+|||
T Consensus 232 ----------------------------------------------------~~~~~~fSn~G~~-----~~~~di~APG 254 (357)
T 4h6x_A 232 ----------------------------------------------------DGTPCHFSNWGGN-----NTKEGILAPG 254 (357)
T ss_dssp ----------------------------------------------------TSSBCTTCC---C-----TTTTEEEEEC
T ss_pred ----------------------------------------------------CCcccccccCCCC-----CCccceeecC
Confidence 2478899999974 4599999999
Q ss_pred ccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHhcccccCCCCCcccc
Q 004113 519 VNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ----NPTFSPSEIKSAVMTTATQTNNLRAPITT 594 (773)
Q Consensus 519 ~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~ 594 (773)
++|+++++.. +.|..++|||||||||||++|||+++ +|.|++++||++|++||++++..+
T Consensus 255 ~~i~s~~~~~-----------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~----- 318 (357)
T 4h6x_A 255 EEILGAQPCT-----------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV----- 318 (357)
T ss_dssp SSEEECCTTC-----------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------
T ss_pred CCeEeccCCC-----------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC-----
Confidence 9999998762 56778999999999999999999954 578999999999999999876432
Q ss_pred CCCCCCCCCCCCcccccccccCC
Q 004113 595 NSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 595 ~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
...+.+||+|+||+.+|++
T Consensus 319 ----~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 319 ----VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ----------CTTCBCCHHHHHH
T ss_pred ----CCCcccceeEEecHHHHHH
Confidence 2256789999999999997
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=428.93 Aligned_cols=266 Identities=23% Similarity=0.252 Sum_probs=212.7
Q ss_pred CCCC-CCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCC
Q 004113 134 QDQE-SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGH 212 (773)
Q Consensus 134 ~~~G-~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gH 212 (773)
.++| +||+|||||||||++||+|.+.. +..+++.... ......|..||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~---------------------------~~~~~~~~~~----~~~~d~~~~gH 51 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD---------------------------LTVLPTLAPT----AARSDGFMSAH 51 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE---------------------------EEECCCSSCC----CCCTTCHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe---------------------------eecCcCCCCC----CCCCCCCCCCc
Confidence 4578 69999999999999999997531 1111111110 11223345789
Q ss_pred chhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCC
Q 004113 213 GTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVR 291 (773)
Q Consensus 213 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 291 (773)
||||||||+|+.. ..+.||||+|+|+.+|++.+. +.....+++++|+||++++++|||||||.... .
T Consensus 52 GT~VAGiiag~~~----------~~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~--~ 119 (282)
T 3zxy_A 52 GTHVASIIFGQPE----------TSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTD--F 119 (282)
T ss_dssp HHHHHHHHHCCTT----------SSSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEES--S
T ss_pred ccceeehhhccCC----------ceeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccc--c
Confidence 9999999999742 235899999999999998655 34677889999999999999999999997643 2
Q ss_pred CCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCC
Q 004113 292 PLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSP 371 (773)
Q Consensus 292 ~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 371 (773)
......+..++.++.++|+++|+||||+|......+...|++|+|||++.
T Consensus 120 ~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------ 169 (282)
T 3zxy_A 120 GEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD------------------------------ 169 (282)
T ss_dssp SCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT------------------------------
T ss_pred ccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC------------------------------
Confidence 34456678888999999999999999999877777777899999998532
Q ss_pred ceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCcc
Q 004113 372 VYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGT 451 (773)
Q Consensus 372 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 451 (773)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCC
Q 004113 452 FPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTG 531 (773)
Q Consensus 452 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~ 531 (773)
.+.++.||+||+. ..||||+|||++|+++++.
T Consensus 170 ---------------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~---- 201 (282)
T 3zxy_A 170 ---------------------------------------HGHPLDFSNWGST-----YEQQGILAPGEDILGAKPG---- 201 (282)
T ss_dssp ---------------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT----
T ss_pred ---------------------------------------CCccccccCCCCC-----ccccceeccCcceeeecCC----
Confidence 2467889999874 4689999999999999987
Q ss_pred CCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC----CCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCc
Q 004113 532 EAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN----PTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGA 607 (773)
Q Consensus 532 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~----p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 607 (773)
+.|..++|||||||||||++|||++++ |.++|++||++|++||++++... +.....||+
T Consensus 202 --------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~---------~~~~~~~G~ 264 (282)
T 3zxy_A 202 --------GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDA---------PEQARRCLA 264 (282)
T ss_dssp --------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------------CGGGTT
T ss_pred --------CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCC---------CCccCceee
Confidence 889999999999999999999999874 78999999999999999875431 225678999
Q ss_pred ccccccccCC
Q 004113 608 GEVSTTASLQ 617 (773)
Q Consensus 608 G~id~~~A~~ 617 (773)
|+||+.+|++
T Consensus 265 G~ln~~~A~~ 274 (282)
T 3zxy_A 265 GRLNVSGAFT 274 (282)
T ss_dssp CBCCHHHHHH
T ss_pred eEeCHHHHHH
Confidence 9999999987
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-49 Score=424.47 Aligned_cols=281 Identities=28% Similarity=0.355 Sum_probs=224.0
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 128 SPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 128 ~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
.++|..+++|+||+|||||||||++||+|.++ +...++|..... .......
T Consensus 16 ~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~--~~~~~~~ 66 (310)
T 2ixt_A 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT--PINNSCT 66 (310)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS--CEETCCC
T ss_pred hhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC--CCCCCCC
Confidence 37999999999999999999999999999742 233344433210 0012356
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCC-----cEEEec
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGV-----DVLSLS 282 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~-----dVIN~S 282 (773)
|..||||||||||+|...+ +...+.||||+|+|+.+|++...+.+..++++++|+|++++++ +|||||
T Consensus 67 d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S 139 (310)
T 2ixt_A 67 DRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMS 139 (310)
T ss_dssp CSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEc
Confidence 7899999999999997522 2334689999999999999988767788999999999999887 999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCC--CCcccCCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 283 LGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSS--GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 283 lG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
||.... ...+..++.++.++|++||+||||+|... ...+...|++|+|||++...
T Consensus 140 ~G~~~~------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~----------------- 196 (310)
T 2ixt_A 140 LGSSAN------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ----------------- 196 (310)
T ss_dssp CCBSSC------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE-----------------
T ss_pred CCCCCC------CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc-----------------
Confidence 998652 36677788899999999999999999763 34455679999999864210
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCC--ccccccCCCCCCCC----CCCccCce
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAP--AIAYFSARGPSPLT----RNILKPDI 514 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~----d~~iKPDI 514 (773)
..+ .++.||++||.... ..+.||||
T Consensus 197 -------------------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di 227 (310)
T 2ixt_A 197 -------------------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEI 227 (310)
T ss_dssp -------------------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCE
T ss_pred -------------------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeE
Confidence 001 57889999995421 12359999
Q ss_pred EeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCcccc
Q 004113 515 TAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITT 594 (773)
Q Consensus 515 ~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~ 594 (773)
+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+.
T Consensus 228 ~ApG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~---- 291 (310)
T 2ixt_A 228 SAPGSSVYSTWYN------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG---- 291 (310)
T ss_dssp EEECSSEEEECTT------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS----
T ss_pred ECCCCCEeeecCC------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC----
Confidence 9999999999887 789999999999999999999999999999999999999999998865421
Q ss_pred CCCCCCCCCCCCcccccc
Q 004113 595 NSGAAATPYDFGAGEVST 612 (773)
Q Consensus 595 ~~~~~~~~~~~G~G~id~ 612 (773)
......++..||||++|+
T Consensus 292 ~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 292 YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp TTCCSSSBTTTBTCBCCC
T ss_pred cccccCCccccccceeec
Confidence 111344778999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-50 Score=430.08 Aligned_cols=264 Identities=29% Similarity=0.376 Sum_probs=219.8
Q ss_pred CCCCCCCCCC--CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 129 PSLNSQDQES--DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 129 ~~~~~~~~G~--Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
.+|+.+ +|+ ||+|||||||||++||+|.++ +...++|..+... .+....
T Consensus 19 ~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~-~~~~~~ 69 (320)
T 2z30_A 19 SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS-TKLRDC 69 (320)
T ss_dssp GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB-CCHHHH
T ss_pred HHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCCccC-CCCCCC
Confidence 689988 899 999999999999999999742 2333333322100 000123
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC------------
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD------------ 274 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~------------ 274 (773)
.|..||||||||||+|.. ++..+.||||+|+|+.+|+++..+.+..++++++|+||+++
T Consensus 70 ~d~~gHGT~vAgiia~~~---------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~ 140 (320)
T 2z30_A 70 ADQNGHGTHVIGTIAALN---------NDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGI 140 (320)
T ss_dssp BCSSSHHHHHHHHHHCCS---------SSBSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSSSC
T ss_pred CCCCCCHHHHHHHHHccc---------CCCceEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccccc
Confidence 578999999999999973 22335899999999999999887667889999999999987
Q ss_pred --------CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCccee
Q 004113 275 --------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFE 346 (773)
Q Consensus 275 --------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~ 346 (773)
+++|||||||.... ...+..++.++.++|++||+||||+|.....++...|++|+|||++.
T Consensus 141 ~~~~~~~~~~~Vin~S~G~~~~------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----- 209 (320)
T 2z30_A 141 IAGDPDDDAAEVISMSLGGPAD------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS----- 209 (320)
T ss_dssp CTTCTTSCCCSEEEECEEBSCC------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-----
T ss_pred cccccccCCceEEEecCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCC-----
Confidence 99999999998652 35677788889999999999999999877777778899999998532
Q ss_pred eEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcc
Q 004113 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDG 426 (773)
Q Consensus 347 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~ 426 (773)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCC
Q 004113 427 VKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLT 506 (773)
Q Consensus 427 ~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (773)
.+.++.||++||
T Consensus 210 ----------------------------------------------------------------~~~~~~~S~~g~---- 221 (320)
T 2z30_A 210 ----------------------------------------------------------------NDNIASFSNRQP---- 221 (320)
T ss_dssp ----------------------------------------------------------------TSCBCTTSCSSC----
T ss_pred ----------------------------------------------------------------CCCcCcccCCCC----
Confidence 136789999997
Q ss_pred CCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC-------------CCCCHHH
Q 004113 507 RNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN-------------PTFSPSE 573 (773)
Q Consensus 507 d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------p~ls~~~ 573 (773)
+|+|||++|+++++. +.|..++|||||||||||++|||+|++ |++++.+
T Consensus 222 ------~v~APG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~ 283 (320)
T 2z30_A 222 ------EVSAPGVDILSTYPD------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNT 283 (320)
T ss_dssp ------SEEEECSSEEEEETT------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTS
T ss_pred ------CEEeCCCCeEEeccC------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHH
Confidence 789999999999987 889999999999999999999999998 9999999
Q ss_pred HHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCC
Q 004113 574 IKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 574 Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
||++|++||+++...+ .+..||+|+||+.+|++.
T Consensus 284 v~~~L~~ta~~~~~~g-----------~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 284 VRGILHITADDLGPTG-----------WDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHHHHHHHSBCCSSSS-----------SBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHhhCccCCCCC-----------CCCCcCCceeCHHHHHHH
Confidence 9999999999886543 567899999999999873
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-50 Score=431.32 Aligned_cols=271 Identities=23% Similarity=0.262 Sum_probs=219.8
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
++|+.+..++||+|||||||||++||+|.++ .+....++..+. .....|
T Consensus 12 ~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~~-----~~~~~d 60 (306)
T 4h6w_A 12 KLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSGE-----ANANGS 60 (306)
T ss_dssp HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC---------------CC
T ss_pred HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCCC-----CCCCCC
Confidence 5899887779999999999999999999753 122222222221 133456
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCC-CCCCHHHHHHHHHHHhhCCCcEEEeccCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPE-YGCTGSNILAAFDDAIADGVDVLSLSLGGSA 287 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~-g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (773)
..+|||||||||+|+. ++.+.||||+|+|+.+|++.+. +.....+++++|+||++++++|||+|||...
T Consensus 61 ~~gHGThVAGiiag~~----------~~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~ 130 (306)
T 4h6w_A 61 MSTHGTHVASIIFGQH----------DSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLT 130 (306)
T ss_dssp CCHHHHHHHHHHHCCT----------TSSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEE
T ss_pred CCCchHHHHHHHHccc----------cCCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccc
Confidence 7899999999999974 2246899999999999998655 4567888999999999999999999999754
Q ss_pred CCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCC
Q 004113 288 GIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNL 367 (773)
Q Consensus 288 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 367 (773)
. .......+..++.++.++|+++|++|||+|......+...+++|+|||++.
T Consensus 131 ~--~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~-------------------------- 182 (306)
T 4h6w_A 131 D--AGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD-------------------------- 182 (306)
T ss_dssp S--SSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT--------------------------
T ss_pred c--CCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC--------------------------
Confidence 3 344556788888999999999999999999877667777789999998532
Q ss_pred CCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccc
Q 004113 368 QKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVAS 447 (773)
Q Consensus 368 ~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 447 (773)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecC
Q 004113 448 SYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMG 527 (773)
Q Consensus 448 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~ 527 (773)
.+.++.||++|+. ..||||+|||++|+++++.
T Consensus 183 -------------------------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~ 214 (306)
T 4h6w_A 183 -------------------------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDILGAKPN 214 (306)
T ss_dssp -------------------------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEEEECTT
T ss_pred -------------------------------------------CCCccccccccCC-----cCcceeecCCcCcccccCC
Confidence 1367788999864 4689999999999999987
Q ss_pred CCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCC
Q 004113 528 NDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ----NPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPY 603 (773)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 603 (773)
+.|..++|||||||||||++|||+++ +|.++|++||++|++||+++...+. .+..
T Consensus 215 ------------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~---------~~~~ 273 (306)
T 4h6w_A 215 ------------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDT---------DDQS 273 (306)
T ss_dssp ------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTC---------SCGG
T ss_pred ------------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCC---------CCCC
Confidence 88999999999999999999999864 6999999999999999999866531 2445
Q ss_pred CCCcccccccccCC
Q 004113 604 DFGAGEVSTTASLQ 617 (773)
Q Consensus 604 ~~G~G~id~~~A~~ 617 (773)
.||+|+||+.+|++
T Consensus 274 ~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 274 RCLMGKLNILDAIE 287 (306)
T ss_dssp GGTTCBCCHHHHHH
T ss_pred CcceeecCHHHHHH
Confidence 79999999999998
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=431.84 Aligned_cols=269 Identities=20% Similarity=0.182 Sum_probs=216.4
Q ss_pred CCCCCCCCCC--CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 129 PSLNSQDQES--DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 129 ~~~~~~~~G~--Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
.+|+. .+|+ ||+||||||||| +||+|.++ +...++|..+.. +......
T Consensus 34 ~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~~-~~~~~~~ 83 (347)
T 2iy9_A 34 ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDGS-PFPVKKS 83 (347)
T ss_dssp HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTCC-SSCCSSS
T ss_pred HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCCC-CCCCCCC
Confidence 58887 8999 999999999999 99999742 333344432210 0011245
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC------CCcEEE
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD------GVDVLS 280 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~------g~dVIN 280 (773)
.|..||||||||||+|+ .| +.||||+|+|+.+|++...+. . ++++||+||+++ +++|||
T Consensus 84 ~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~~~-~--~~~~ai~~a~~~~~~~~~~~~Vin 148 (347)
T 2iy9_A 84 EALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDGVQ-D--SWIRAIESIMSNVFLAPGEEKIIN 148 (347)
T ss_dssp HHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSBCT-T--HHHHHHHHHHTCTTSCTTEEEEEE
T ss_pred CCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCCCH-H--HHHHHHHHHHhhhhcccCCceEEE
Confidence 66889999999999987 12 489999999999999987622 2 999999999999 999999
Q ss_pred eccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCC-------CCCcccCCC----------cEEEEccccc--
Q 004113 281 LSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPS-------SGSVVNFAP----------WIFTVAASTI-- 341 (773)
Q Consensus 281 ~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~-------~~~~~~~~p----------~vitVga~~~-- 341 (773)
||||... .......+..++.++.++|++||+||||+|.. ...++...+ ++|+|||++.
T Consensus 149 ~S~G~~~---~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~ 225 (347)
T 2iy9_A 149 ISGGQKG---VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYR 225 (347)
T ss_dssp ESSCBCC---C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCC
T ss_pred eccccCC---CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCC
Confidence 9999765 23455778888899999999999999999975 334555567 9999998654
Q ss_pred CcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchh
Q 004113 342 DRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVV 421 (773)
Q Consensus 342 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~ 421 (773)
+....
T Consensus 226 ~g~~~--------------------------------------------------------------------------- 230 (347)
T 2iy9_A 226 KGETP--------------------------------------------------------------------------- 230 (347)
T ss_dssp TTSCC---------------------------------------------------------------------------
T ss_pred CCcee---------------------------------------------------------------------------
Confidence 11000
Q ss_pred hhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCC
Q 004113 422 DKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARG 501 (773)
Q Consensus 422 ~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 501 (773)
...+.++.||++|
T Consensus 231 -------------------------------------------------------------------~~~~~~~~fS~~G 243 (347)
T 2iy9_A 231 -------------------------------------------------------------------VLHGGGITGSRFG 243 (347)
T ss_dssp -------------------------------------------------------------------CBCCCSSSCBCBC
T ss_pred -------------------------------------------------------------------cccCCCCCCCCCC
Confidence 0013567999999
Q ss_pred CCCCCCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004113 502 PSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTT 581 (773)
Q Consensus 502 p~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~T 581 (773)
|+ ||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++|
T Consensus 244 ~~-------~~di~APG~~i~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~t 304 (347)
T 2iy9_A 244 NN-------WVDIAAPGQNITFLRPD------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLES 304 (347)
T ss_dssp TT-------TCSEEEECSSEEEECTT------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CC-------CCEEEeCCCCeEeecCC------------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 95 67999999999999987 889999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccccCCCCCCCCCCCCcccccccccCCC
Q 004113 582 ATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 582 A~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
|+++... .+..||+|+||+.+|++.
T Consensus 305 A~~~~~~------------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 305 ADKYPSL------------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp SEECGGG------------TTTSGGGEECCHHHHHHH
T ss_pred CccCCCC------------CCccccCCEecHHHHHHH
Confidence 9998764 346999999999999984
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-48 Score=406.43 Aligned_cols=251 Identities=26% Similarity=0.351 Sum_probs=210.4
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeec
Q 004113 114 FLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFY 193 (773)
Q Consensus 114 ~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~ 193 (773)
.|+|....+...+...+|..+++|+||+|||||||||++||+|.+ ++...++|
T Consensus 5 ~W~l~~i~~~~~~~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~ 57 (284)
T 1sh7_A 5 IWGLDRIDQRNLPLDRNYNANFDGFGVTAYVIDTGVNNNHEEFGG---------------------------RSVSGYDF 57 (284)
T ss_dssp CHHHHHHTCSSSSCCSBCCCSCCCTTCEEEEEESCCCTTCTTTTT---------------------------CEEEEEET
T ss_pred CcChhhcCCcccCchhhhhcCCCCCCCEEEEEcCCCCCCChhHcC---------------------------Cccccccc
Confidence 455555443344455799999999999999999999999999974 23344555
Q ss_pred cccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh
Q 004113 194 DIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA 273 (773)
Q Consensus 194 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~ 273 (773)
.+.. ..+.|..+|||||||||+|.. .||||+|+|+.+|+++..+.+..+++++||+|+++
T Consensus 58 ~~~~------~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~ 117 (284)
T 1sh7_A 58 VDND------ADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQ 117 (284)
T ss_dssp TTTB------SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHH
T ss_pred cCCC------CCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHh
Confidence 4432 356789999999999999873 69999999999999988767888999999999997
Q ss_pred --CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEE
Q 004113 274 --DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIV 350 (773)
Q Consensus 274 --~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~ 350 (773)
.+++|||||||... ...+..++.++.++|++||+||||+|.... ..+...|++|+|||++.
T Consensus 118 ~~~~~~Vin~S~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------- 181 (284)
T 1sh7_A 118 NASGPSVANMSLGGGQ-------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS--------- 181 (284)
T ss_dssp HCCSSEEEEECCCBSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT---------
T ss_pred CCCCCcEEEeCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC---------
Confidence 47999999999764 266778888999999999999999996532 34556789999998532
Q ss_pred ECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccC
Q 004113 351 LGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSL 430 (773)
Q Consensus 351 ~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~ 430 (773)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCc
Q 004113 431 GGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNIL 510 (773)
Q Consensus 431 Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~i 510 (773)
.+.++.||++||..
T Consensus 182 ------------------------------------------------------------~~~~~~~S~~G~~~------ 195 (284)
T 1sh7_A 182 ------------------------------------------------------------SDSRSSFSNWGSCV------ 195 (284)
T ss_dssp ------------------------------------------------------------TSBBCTTCCBSTTC------
T ss_pred ------------------------------------------------------------CCCcCcccCCCCcc------
Confidence 13678999999965
Q ss_pred cCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC
Q 004113 511 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNN 587 (773)
Q Consensus 511 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~ 587 (773)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||++...
T Consensus 196 --di~ApG~~i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 196 --DLFAPGSQIKSAWYD------------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp --CEEEECSSEEEECTT------------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred --EEEeccCCeEEecCC------------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCc
Confidence 999999999999887 789999999999999999999999999999999999999999998754
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=434.44 Aligned_cols=291 Identities=25% Similarity=0.312 Sum_probs=224.1
Q ss_pred CCCC-CCCCCCCcEEEEEccCCCC------CCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccC
Q 004113 129 PSLN-SQDQESDTIIGILDTGVWP------ESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVA 201 (773)
Q Consensus 129 ~~~~-~~~~G~Gv~VaVIDtGid~------~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~ 201 (773)
.+|+ .+++|+||+|||||||||+ .||+|.+ ++...++|.+.
T Consensus 12 ~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~---------------------------~i~~~~~~~~~----- 59 (434)
T 1wmd_A 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRG---------------------------KITALYALGRT----- 59 (434)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTT---------------------------CEEEEEETTTT-----
T ss_pred hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCC---------------------------CEeeeccccCC-----
Confidence 5887 6999999999999999999 7999863 34444555432
Q ss_pred CCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCC--CHHHHHHHHHHHhhCCCcEE
Q 004113 202 NGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGC--TGSNILAAFDDAIADGVDVL 279 (773)
Q Consensus 202 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~--~~~~i~~ai~~a~~~g~dVI 279 (773)
..+.|..||||||||||+|++. .+.||||+|+|+.+|++...+.. ...++.++|++++++|++||
T Consensus 60 --~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vi 126 (434)
T 1wmd_A 60 --NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIH 126 (434)
T ss_dssp --TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEE
T ss_pred --CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEE
Confidence 3567889999999999998641 25899999999999999876333 45689999999999999999
Q ss_pred EeccCCCCCCCCCCCCcHHHHHHHHH-HhCCcEEEEecCCCCCCCCC--cccCCCcEEEEcccccCcceeeEEEECCceE
Q 004113 280 SLSLGGSAGIVRPLTDDPIALGAFHA-VEHGITVVCSAGNDGPSSGS--VVNFAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 280 N~SlG~~~~~~~~~~~~~~~~~~~~a-~~~Gi~vV~aAGN~g~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
|||||.... ..+ +....+++++ .++|++||+||||+|..... .+..++++|+|||++..+...
T Consensus 127 n~S~G~~~~---~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~---------- 192 (434)
T 1wmd_A 127 TNSWGAAVN---GAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF---------- 192 (434)
T ss_dssp EECCCBCCT---TCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG----------
T ss_pred EecCCCCcC---CcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc----------
Confidence 999998652 112 3445555555 58999999999999976433 445679999999975432100
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
+.
T Consensus 193 ----------------------------------------~~-------------------------------------- 194 (434)
T 1wmd_A 193 ----------------------------------------GS-------------------------------------- 194 (434)
T ss_dssp ----------------------------------------CG--------------------------------------
T ss_pred ----------------------------------------Cc--------------------------------------
Confidence 00
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
.....+.++.||++||+. ++++||||+|
T Consensus 195 --------------------------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~A 222 (434)
T 1wmd_A 195 --------------------------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMA 222 (434)
T ss_dssp --------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEE
T ss_pred --------------------------------------------------ccCCCCccccccCCCCCC--CCCCCceEEc
Confidence 001135889999999997 7999999999
Q ss_pred CCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCC-----CHHHHHHHHHhcccccCCCCCc
Q 004113 517 PGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTF-----SPSEIKSAVMTTATQTNNLRAP 591 (773)
Q Consensus 517 PG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~l-----s~~~Ik~~L~~TA~~~~~~g~~ 591 (773)
||++|+++++.............+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++...
T Consensus 223 pG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~~--- 299 (434)
T 1wmd_A 223 PGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG--- 299 (434)
T ss_dssp ECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSC---
T ss_pred CCCCeEecCCCCCCCcccccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCCC---
Confidence 99999999864221000000012689999999999999999999999998875 8999999999999986432
Q ss_pred cccCCCCCCCCCCCCcccccccccCCCc
Q 004113 592 ITTNSGAAATPYDFGAGEVSTTASLQPG 619 (773)
Q Consensus 592 ~~~~~~~~~~~~~~G~G~id~~~A~~~~ 619 (773)
.+++.||||++|+.+|++..
T Consensus 300 --------~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 300 --------YPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp --------SSCTTTTTCBCCHHHHHTCE
T ss_pred --------CCCccCCcCeEeHHHhcccc
Confidence 26789999999999999754
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=457.00 Aligned_cols=408 Identities=20% Similarity=0.192 Sum_probs=267.8
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHH
Q 004113 139 DTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVAS 218 (773)
Q Consensus 139 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 218 (773)
+|+|||||||++.+|++.... ..|+. ..++... .+.+....++.++.+ ......|..||||||||
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~----~~dyg~F--~D~v~~~~n~~Ddgd---~~~~v~D~~GHGThVAG 278 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSR----THETRNV--DDFLSISVNVHDEGN---VLEVVGMSSPHGTHVSS 278 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTT----TCCCCEE--SSSCEEEEEEEGGGT---EEEEEECCCHHHHHHHH
T ss_pred CEEEEEEeCCCCCCccccccc------ccccc----ccccccc--ccccCCCCccCCCCC---ccccCCCCCCcHHHHHH
Confidence 699999999998766654210 01110 1111100 122222222222210 00123478999999999
Q ss_pred hhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC--CCHHHHHHHHHHHhh-----CCCcEEEeccCCCCCCCC
Q 004113 219 TAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG--CTGSNILAAFDDAIA-----DGVDVLSLSLGGSAGIVR 291 (773)
Q Consensus 219 iiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~--~~~~~i~~ai~~a~~-----~g~dVIN~SlG~~~~~~~ 291 (773)
||||.. + +..+.||||+|+|+.+|+++..++ ....+++.+|.+|++ .|++|||||||....
T Consensus 279 IIAa~~-N--------~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~--- 346 (1354)
T 3lxu_X 279 IASGNH-S--------SRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHAN--- 346 (1354)
T ss_dssp HHCCCC-S--------SSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCS---
T ss_pred HHhcCC-C--------CCCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCC---
Confidence 999986 3 233589999999999999977533 255678888888877 799999999999762
Q ss_pred CCCCcHHHHHHHHHH-hCCcEEEEecCCCCCCCCCc--cc--CCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCC
Q 004113 292 PLTDDPIALGAFHAV-EHGITVVCSAGNDGPSSGSV--VN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSN 366 (773)
Q Consensus 292 ~~~~~~~~~~~~~a~-~~Gi~vV~aAGN~g~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 366 (773)
....+.+..++.++. ++|++||+||||+|....++ +. .++++|+|||++.+.........
T Consensus 347 ~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~--------------- 411 (1354)
T 3lxu_X 347 WSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM--------------- 411 (1354)
T ss_dssp CSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-------------------
T ss_pred CCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc---------------
Confidence 334467777788875 89999999999999765443 33 36999999997643211000000
Q ss_pred CCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc
Q 004113 367 LQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA 446 (773)
Q Consensus 367 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 446 (773)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeec
Q 004113 447 SSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWM 526 (773)
Q Consensus 447 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~ 526 (773)
.....+.++.|||+||+. ++++||||+|||++|.++..
T Consensus 412 ----------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~ 449 (1354)
T 3lxu_X 412 ----------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQ 449 (1354)
T ss_dssp ----------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC--------
T ss_pred ----------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeec
Confidence 000125789999999997 69999999999999999865
Q ss_pred CCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCC
Q 004113 527 GNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKH----QNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATP 602 (773)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 602 (773)
... +.|..++|||||||+|||++|||++ .+|+|++.+||++|++||+++... ++
T Consensus 450 ~~~----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~------------~~ 507 (1354)
T 3lxu_X 450 FTM----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV------------DP 507 (1354)
T ss_dssp -----------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS------------CT
T ss_pred CCC----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCC------------Cc
Confidence 322 6799999999999999999999986 799999999999999999998653 56
Q ss_pred CCCCcccccccccCCCceeecCCchhhhccccccCCCcc-eeeeeeccCCCCccCCCCCCCCCCCCCCCCeEEEeccCCC
Q 004113 603 YDFGAGEVSTTASLQPGLVYETTTLDYLNFLCYYGYDLS-KIKMIATTIPKDFACPKDSGVDSISNINYPSIAVSSFDGK 681 (773)
Q Consensus 603 ~~~G~G~id~~~A~~~~lv~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~ 681 (773)
+.||+|+||+.+|++..+.++..+.+++.|.|..+.+.. .|.+ . +.. ...
T Consensus 508 ~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIyl--R------------------~~~--------~~~- 558 (1354)
T 3lxu_X 508 FAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHL--R------------------QGV--------QRN- 558 (1354)
T ss_dssp TTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEE--C------------------SSC--------CCS-
T ss_pred ccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEE--e------------------ccc--------cCC-
Confidence 789999999999999999999999999999999875322 1111 0 000 011
Q ss_pred ccEEEEEEEE----eccC--CC-CeE--EEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEE
Q 004113 682 EGRTISRTVT----NVAG--NN-ETI--YTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITW 752 (773)
Q Consensus 682 ~~~~~~~tvt----n~~~--~~-~~t--y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~ 752 (773)
...|+++|+ |... .. ... -++.+.... --|++ |+.|.+ .++.++|.|.|+... ...+..++.|..
T Consensus 559 -~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~~-p~~l~l--~~~~r~~~v~vDp~~-L~~G~h~~~v~~ 632 (1354)
T 3lxu_X 559 -SIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQC-GAFLDL--SYGTRSIAVRVDPTG-LQPGVHSAVIRA 632 (1354)
T ss_dssp -CEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEEE-CSCEEC--TTSCEEEEEEECGGG-CCSEEEEEEEEE
T ss_pred -ceEEEEEEeeeecCcccCChhhccceEEEEEEecCC-Cceec-ccceee--cCCCceEEEEECCCC-CCCcceeEEEEE
Confidence 233333331 1110 11 111 222222211 13333 777876 467789999999875 455778899987
Q ss_pred EC-----CceeEEEEEEEEe
Q 004113 753 SN-----GKYKVRSLFVVSS 767 (773)
Q Consensus 753 ~~-----~~~~v~~P~~~~~ 767 (773)
.| -.+..|+||-|..
T Consensus 633 ~D~~~~~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 633 YDTDCVQKGSLFEIPVTVVQ 652 (1354)
T ss_dssp EESSCTTSCCSEEEEEEEEE
T ss_pred EEcCCcccCceEEeeEEEEe
Confidence 65 2589999998753
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=420.64 Aligned_cols=289 Identities=22% Similarity=0.288 Sum_probs=219.1
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcc-----cCCce---eEeeeeccccccc-
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSF-----SCNRK---IIGARFYDIEDDV- 199 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~-----~~n~k---i~~~~~~~~~~~~- 199 (773)
.+|+.+++|+||+||||||||+ +||+|.+.-.. .| +|... ..+.+ -....++.+.+..
T Consensus 23 ~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (340)
T 3lpc_A 23 KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GY--------DFISNSQISLDGDGRDADPFDEGDWFDNWACG 89 (340)
T ss_dssp HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CE--------ECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS
T ss_pred HHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----Cc--------cccCCccccccCCCccCCcccccccccccccc
Confidence 6999999999999999999998 99999753211 11 11000 00000 0000000000000
Q ss_pred --cCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh----
Q 004113 200 --VANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA---- 273 (773)
Q Consensus 200 --~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~---- 273 (773)
..+.....|..||||||||||+|...++. .+.||||+|+|+.+|++... ++..++++++|+|+++
T Consensus 90 ~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~ 160 (340)
T 3lpc_A 90 GRPDPRKERSDSSWHGSHVAGTIAAVTNNRI--------GVAGVAYGAKVVPVRALGRC-GGYDSDISDGLYWAAGGRIA 160 (340)
T ss_dssp CTTCGGGSCBCCCCHHHHHHHHHHCCCSSSS--------SCCCTTTTSEEEEEECCBTT-BCCHHHHHHHHHHHHTCCCT
T ss_pred CCCCcccCCCCCCCCHHHHHHHHHccCCCCC--------cceeecCCCEEEEEEEecCC-CCcHHHHHHHHHHHhccccc
Confidence 01112356889999999999999864432 35899999999999999887 4788999999999998
Q ss_pred ------CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCccee
Q 004113 274 ------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFE 346 (773)
Q Consensus 274 ------~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~ 346 (773)
.+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 161 ~~~~~~~~~~Vin~S~G~~~-----~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----- 230 (340)
T 3lpc_A 161 GIPENRNPAKVINMSLGSDG-----QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS----- 230 (340)
T ss_dssp TSCCCSSCCSEEEECCCEES-----CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT-----
T ss_pred ccccccCCCeEEEeCcCCCC-----CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC-----
Confidence 89999999999754 13456777888999999999999999986543 34556789999998532
Q ss_pred eEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcc
Q 004113 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDG 426 (773)
Q Consensus 347 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~ 426 (773)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCC
Q 004113 427 VKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLT 506 (773)
Q Consensus 427 ~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (773)
.+.++.||++||
T Consensus 231 ----------------------------------------------------------------~~~~~~~S~~g~---- 242 (340)
T 3lpc_A 231 ----------------------------------------------------------------RGIRASFSNYGV---- 242 (340)
T ss_dssp ----------------------------------------------------------------TSSBCTTCCBST----
T ss_pred ----------------------------------------------------------------CCCcCCCCCCCC----
Confidence 246789999997
Q ss_pred CCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhh-C---CCCCHHHHHHHHHhcc
Q 004113 507 RNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQ-N---PTFSPSEIKSAVMTTA 582 (773)
Q Consensus 507 d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---p~ls~~~Ik~~L~~TA 582 (773)
||||+|||++|+++++.... ....+.|..++|||||||+|||++|||+|+ + |.+++++||++|++||
T Consensus 243 ----~~di~ApG~~i~s~~~~~~~-----~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA 313 (340)
T 3lpc_A 243 ----DVDLAAPGQDILSTVDSGTR-----RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTT 313 (340)
T ss_dssp ----TCCEEEECSSEEEEEESCSS-----SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTC
T ss_pred ----CceEEecCCCeecccCCCCc-----CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcC
Confidence 56999999999999876321 111245999999999999999999999998 5 9999999999999999
Q ss_pred cccCCCCCccccCCCCCCCCCCCCcccccccccCCC
Q 004113 583 TQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 583 ~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
+++... ++..||+|+||+.+|++.
T Consensus 314 ~~~~~~------------~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 314 SPFNGR------------LDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp BCCSSC------------CSSCCCSSBCCHHHHHHH
T ss_pred CcCCCC------------CCCCcccceecHHHHHHH
Confidence 987543 567999999999999874
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=400.73 Aligned_cols=252 Identities=29% Similarity=0.363 Sum_probs=208.9
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeec
Q 004113 114 FLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFY 193 (773)
Q Consensus 114 ~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~ 193 (773)
.|++........+...+|..+++|+||+|||||||||++||+|.++ +...++|
T Consensus 7 ~W~l~~i~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~ 59 (278)
T 2b6n_A 7 TWGIDRIDQRNLPLDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDF 59 (278)
T ss_dssp CHHHHHHTCSSSSCCSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEET
T ss_pred CCCccccCCccCCcchhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeec
Confidence 4555554444445567899999999999999999999999999742 3334455
Q ss_pred cccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh
Q 004113 194 DIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA 273 (773)
Q Consensus 194 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~ 273 (773)
.++. ..+.|..+|||||||||+|.. .||||+|+|+.+|++++.+.+..++++++|+|+++
T Consensus 60 ~~~~------~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~ 119 (278)
T 2b6n_A 60 IDND------YDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKN 119 (278)
T ss_dssp TTTB------SCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCC------CCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHh
Confidence 4332 346789999999999999863 69999999999999988767888999999999997
Q ss_pred --CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEE
Q 004113 274 --DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIV 350 (773)
Q Consensus 274 --~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~ 350 (773)
.+++|||||||... ...+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 120 ~~~g~~Vin~S~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------- 183 (278)
T 2b6n_A 120 NASGPAVANMSLGGGA-------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS--------- 183 (278)
T ss_dssp HCCSSEEEEECCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------
T ss_pred CCCCCeEEEECCCCCc-------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC---------
Confidence 59999999999754 256777888999999999999999996543 23556789999998532
Q ss_pred ECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccC
Q 004113 351 LGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSL 430 (773)
Q Consensus 351 ~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~ 430 (773)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCc
Q 004113 431 GGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNIL 510 (773)
Q Consensus 431 Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~i 510 (773)
.+.++.||++||.
T Consensus 184 ------------------------------------------------------------~~~~~~~S~~G~~------- 196 (278)
T 2b6n_A 184 ------------------------------------------------------------NDSRSSFSNYGTC------- 196 (278)
T ss_dssp ------------------------------------------------------------TSBBCTTCCBSTT-------
T ss_pred ------------------------------------------------------------CCCcCCcCCCCCC-------
Confidence 1367899999985
Q ss_pred cCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 004113 511 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTN 586 (773)
Q Consensus 511 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~ 586 (773)
|||+|||++|++++.... +.|..++|||||||||||++|||+|++|+|++++||++|++||++..
T Consensus 197 -~di~ApG~~i~s~~~~~~----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 197 -LDIYAPGSSITSSWYTSN----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp -CCEEEECSSEEEECTTST----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred -CeEEeCCCCeECcccCCC----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 499999999999986522 67999999999999999999999999999999999999999998754
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=400.21 Aligned_cols=254 Identities=26% Similarity=0.315 Sum_probs=211.5
Q ss_pred ccccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeee
Q 004113 112 WDFLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGAR 191 (773)
Q Consensus 112 ~~~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~ 191 (773)
+..|++.......++...+|..+.+|+||+|||||||||++||+|.++ +...+
T Consensus 5 ~~~W~l~~i~~~~~~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~ 57 (276)
T 4dzt_A 5 PAPWGLDRIDQRDLPLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGY 57 (276)
T ss_dssp SCCHHHHHHTSSSSSCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEE
T ss_pred CCCCChhhcCCccCCcccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccc
Confidence 344555544434455567999999999999999999999999999742 33334
Q ss_pred eccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHH
Q 004113 192 FYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDA 271 (773)
Q Consensus 192 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a 271 (773)
++.. ....|..||||||||||+|.. .||||+|+|+.+|++...+.....+++++++|+
T Consensus 58 ~~~~--------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~ 115 (276)
T 4dzt_A 58 DALG--------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWV 115 (276)
T ss_dssp ETTS--------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred cCCC--------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 4432 345678999999999999873 799999999999999988778999999999999
Q ss_pred hhC--CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-ccCCCcEEEEcccccCcceeeE
Q 004113 272 IAD--GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV-VNFAPWIFTVAASTIDRDFESD 348 (773)
Q Consensus 272 ~~~--g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~ 348 (773)
+++ +++|||||||... ...+..++.++.++|+++|+||||+|...... +...+++|+|||++.
T Consensus 116 ~~~~~~~~vin~S~g~~~-------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------- 181 (276)
T 4dzt_A 116 TRNHRRPAVANMSLGGGV-------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS------- 181 (276)
T ss_dssp HHHCCSSEEEEECCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------
T ss_pred HhcCCCCeEEEECCCCCC-------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC-------
Confidence 986 8999999999754 36777888999999999999999999654333 556788999988532
Q ss_pred EEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccc
Q 004113 349 IVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVK 428 (773)
Q Consensus 349 ~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~ 428 (773)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCC
Q 004113 429 SLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRN 508 (773)
Q Consensus 429 ~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~ 508 (773)
.+.++.||++||..
T Consensus 182 --------------------------------------------------------------~~~~~~~S~~g~~~---- 195 (276)
T 4dzt_A 182 --------------------------------------------------------------SDARASFSNYGSCV---- 195 (276)
T ss_dssp --------------------------------------------------------------TSBBCTTCCBSTTC----
T ss_pred --------------------------------------------------------------CCCcCCcCCCCCCc----
Confidence 24778999999976
Q ss_pred CccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 004113 509 ILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNL 588 (773)
Q Consensus 509 ~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~ 588 (773)
||+|||++|.+++.... ..|..++|||||||+|||++|||+|++|++++++||++|++||++....
T Consensus 196 ----dv~ApG~~i~s~~~~~~----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 196 ----DLFAPGASIPSAWYTSD----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp ----CEEEECSSEEEECTTSS----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred ----eEEeCCCCeEccccCCC----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccC
Confidence 99999999999987632 5899999999999999999999999999999999999999999987654
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-47 Score=397.23 Aligned_cols=241 Identities=27% Similarity=0.352 Sum_probs=203.0
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCC
Q 004113 130 SLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDM 209 (773)
Q Consensus 130 ~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~ 209 (773)
.|. ..+|+||+|+|||||||++||+|.+. +...++|. ..+.|.
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~---------~~~~d~ 66 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYY---------YSSRDG 66 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESS---------SCSSCS
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCC---------CCCCCC
Confidence 343 47899999999999999999999742 23334443 135678
Q ss_pred CCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCC-------cEEEec
Q 004113 210 VGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGV-------DVLSLS 282 (773)
Q Consensus 210 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~-------dVIN~S 282 (773)
.+|||||||||+|.. .||||+|+|+.+|+++..+.+..++++++|+|++++++ +|||||
T Consensus 67 ~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S 132 (279)
T 2pwa_A 67 NGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLS 132 (279)
T ss_dssp SSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEEC
T ss_pred CCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEec
Confidence 999999999999863 79999999999999998866889999999999999887 999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCcceeeEEEECCceEEeeee
Q 004113 283 LGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGES 361 (773)
Q Consensus 283 lG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~ 361 (773)
||... .+.+..++.++.++|++||+||||+|.... ..+...|++|+|||++.
T Consensus 133 ~G~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------------- 185 (279)
T 2pwa_A 133 LGGGY-------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR-------------------- 185 (279)
T ss_dssp CCEEC-------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------------
T ss_pred CCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC--------------------
Confidence 99653 367778889999999999999999997543 24556789999998532
Q ss_pred eccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCC
Q 004113 362 INFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQ 441 (773)
Q Consensus 362 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~ 441 (773)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccE
Q 004113 442 SRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNI 521 (773)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I 521 (773)
.+.++.||++||.. ||+|||++|
T Consensus 186 -------------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i 208 (279)
T 2pwa_A 186 -------------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDI 208 (279)
T ss_dssp -------------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSE
T ss_pred -------------------------------------------------CCCcCCcCCCCCcc--------eEEEecCCe
Confidence 13678999999964 999999999
Q ss_pred EeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCC
Q 004113 522 LAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAAT 601 (773)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 601 (773)
+++++. +.|..++|||||||||||++|||+|+ |++++.+||++|++||++...
T Consensus 209 ~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~-------------- 261 (279)
T 2pwa_A 209 LSTWIG------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL-------------- 261 (279)
T ss_dssp EEEETT------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC--------------
T ss_pred EEeecC------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc--------------
Confidence 999987 78999999999999999999999999 999999999999999998643
Q ss_pred CCCCCccccccc
Q 004113 602 PYDFGAGEVSTT 613 (773)
Q Consensus 602 ~~~~G~G~id~~ 613 (773)
..+|+|..|+.
T Consensus 262 -~~~~~g~~n~l 272 (279)
T 2pwa_A 262 -SNIPFGTVNLL 272 (279)
T ss_dssp -BSCCTTSCCEE
T ss_pred -CCCCCCCccEe
Confidence 24677777763
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=421.91 Aligned_cols=297 Identities=16% Similarity=0.134 Sum_probs=218.1
Q ss_pred CCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCC
Q 004113 125 SVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQ 204 (773)
Q Consensus 125 ~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~ 204 (773)
+....+|..+++|+||+|||||||||++||+|.+.-. . ...++|.+......+..
T Consensus 25 i~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~------------~-------------~~~~d~~~~~~~p~~~~ 79 (471)
T 1p8j_A 25 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------P-------------GASFDVNDQDPDPQPRY 79 (471)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------G-------------GGCEETTTTBSCCCCCC
T ss_pred CChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC------------c-------------cCcccccCCCCCCCCcc
Confidence 3345799999999999999999999999999985310 0 01122322211000112
Q ss_pred CCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEecc
Q 004113 205 SPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSL 283 (773)
Q Consensus 205 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~Sl 283 (773)
...|..+|||||||||+|...++ ..+.||||+|+|+.+|+++ +..+++++|++++++ ++++||||||
T Consensus 80 ~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~----g~~~~~~~ai~~a~~~~~~~Vin~S~ 147 (471)
T 1p8j_A 80 TQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHIHIYSASW 147 (471)
T ss_dssp CTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTTCCEEEECC
T ss_pred CCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccC----CchhHHHHHHHhhhccCCCeEEEecc
Confidence 34678999999999999976432 2358999999999999985 346789999999999 9999999999
Q ss_pred CCCCCCC-CCCCCcHHHHHHHHHH-----hCCcEEEEecCCCCCCCCCc----ccCCCcEEEEcccccCcceeeEEEECC
Q 004113 284 GGSAGIV-RPLTDDPIALGAFHAV-----EHGITVVCSAGNDGPSSGSV----VNFAPWIFTVAASTIDRDFESDIVLGG 353 (773)
Q Consensus 284 G~~~~~~-~~~~~~~~~~~~~~a~-----~~Gi~vV~aAGN~g~~~~~~----~~~~p~vitVga~~~~~~~~~~~~~g~ 353 (773)
|...... .......+..++.++. .+|++||+||||+|...... ...++++|+|||++.
T Consensus 148 G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~------------ 215 (471)
T 1p8j_A 148 GPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ------------ 215 (471)
T ss_dssp BSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT------------
T ss_pred CcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC------------
Confidence 9864210 0112233444555554 36999999999999653221 123578999998542
Q ss_pred ceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCce
Q 004113 354 NKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGV 433 (773)
Q Consensus 354 ~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~ 433 (773)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCc
Q 004113 434 GVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPD 513 (773)
Q Consensus 434 g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPD 513 (773)
.+.++.||++||.. +...+|.
T Consensus 216 ---------------------------------------------------------~g~~a~~S~~g~~~--~~~~~~~ 236 (471)
T 1p8j_A 216 ---------------------------------------------------------FGNVPWYSEACSST--LATTYSS 236 (471)
T ss_dssp ---------------------------------------------------------TSCCCTTCCBCTTC--CEEEECC
T ss_pred ---------------------------------------------------------CCCcccccCCCCcc--eEEeCCC
Confidence 14678999999987 3445566
Q ss_pred eEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccc
Q 004113 514 ITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPIT 593 (773)
Q Consensus 514 I~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~ 593 (773)
..+||..|+++.... +.|..++|||||||||||++|||+|++|+|++++||++|++||+++......+.
T Consensus 237 ~~~~g~~i~st~~~~-----------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~ 305 (471)
T 1p8j_A 237 GNQNEKQIVTTDLRQ-----------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWA 305 (471)
T ss_dssp CSTTSCCEEEEETTT-----------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCE
T ss_pred CCCCCCCEEEeeCCC-----------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCce
Confidence 666678999998641 568999999999999999999999999999999999999999999875433222
Q ss_pred cCCCCCCCCCCCCcccccccccCCCce
Q 004113 594 TNSGAAATPYDFGAGEVSTTASLQPGL 620 (773)
Q Consensus 594 ~~~~~~~~~~~~G~G~id~~~A~~~~l 620 (773)
........+..||||+||+.+|++...
T Consensus 306 ~n~~g~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 306 TNGVGRKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp ECTTSCEEBTTTBTCBCCHHHHHHHHH
T ss_pred ecCCCcccCCCCCCEEEcHhHHHHHhh
Confidence 222222356799999999999998544
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=418.82 Aligned_cols=287 Identities=16% Similarity=0.138 Sum_probs=216.4
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
...+|..+++|+||+|||||||||++||+|.+.- +. .+.++|.++.. +....
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~~------------------~~~~d~~~~~~---~~~p~ 94 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------CA------------------EGSWDFNDNTN---LPKPR 94 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------CG------------------GGCEETTTTBS---CCCCC
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------cc------------------cCcccCCCCCC---CCCCC
Confidence 3468999999999999999999999999998531 00 01233333221 11223
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGS 286 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (773)
.|..+|||||||||+|...++ ..+.||||+|+|+.+|+++. .....++++||+|+++++ +|||||||..
T Consensus 95 ~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~--~~~~~~~~~ai~~a~~~~-~Iin~S~G~~ 163 (503)
T 2id4_A 95 LSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDVN-DIYSCSWGPA 163 (503)
T ss_dssp STTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTTC-SEEEECEESC
T ss_pred CCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCC--CCChHHHHHHHHhHhhcC-CEEEeCCCcC
Confidence 578899999999999976443 22489999999999999974 367889999999999998 9999999986
Q ss_pred CCCC-CCCCCcHHHHHHHHHH-----hCCcEEEEecCCCCCCCCC--ccc--CCCcEEEEcccccCcceeeEEEECCceE
Q 004113 287 AGIV-RPLTDDPIALGAFHAV-----EHGITVVCSAGNDGPSSGS--VVN--FAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~~a~-----~~Gi~vV~aAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
.... .......+..++.++. .+|++||+||||+|..... .+. .++++|+|||++.
T Consensus 164 ~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~--------------- 228 (503)
T 2id4_A 164 DDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH--------------- 228 (503)
T ss_dssp CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT---------------
T ss_pred CCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC---------------
Confidence 4210 1112344566666665 4799999999999965332 222 3578999988532
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
.+.++.||++||.. |++|
T Consensus 229 ------------------------------------------------------~~~~a~~S~~g~~~--------~~~a 246 (503)
T 2id4_A 229 ------------------------------------------------------KDLHPPYSEGCSAV--------MAVT 246 (503)
T ss_dssp ------------------------------------------------------TSCCCTTCCCCTTE--------EEEE
T ss_pred ------------------------------------------------------CCCcCCcCCCCCcc--------eEee
Confidence 13678999999987 8887
Q ss_pred ----CCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC-CCc
Q 004113 517 ----PGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNL-RAP 591 (773)
Q Consensus 517 ----PG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~-g~~ 591 (773)
||..|+++... .+.|..++|||||||||||++|||+|++|+|++++||++|++||+++... ...
T Consensus 247 ~~~gpG~~I~st~~~-----------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~ 315 (503)
T 2id4_A 247 YSSGSGEYIHSSDIN-----------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGD 315 (503)
T ss_dssp ECSBTTBCEEEECST-----------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGC
T ss_pred cCCCCCCceEeecCC-----------CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCC
Confidence 89999999543 17899999999999999999999999999999999999999999988654 211
Q ss_pred cccCCCCCCCCCCCCcccccccccCCCce
Q 004113 592 ITTNSGAAATPYDFGAGEVSTTASLQPGL 620 (773)
Q Consensus 592 ~~~~~~~~~~~~~~G~G~id~~~A~~~~l 620 (773)
+.........+..||||+||+.+|++...
T Consensus 316 ~~~~~~g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 316 WRDSAMGKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp CEECSSSSEEBTTTBTCBCCHHHHHHHHT
T ss_pred ceecCCCCccCcccCCcEecHHHHHHHHh
Confidence 21111122345689999999999998544
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=406.80 Aligned_cols=291 Identities=19% Similarity=0.186 Sum_probs=205.8
Q ss_pred cCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeecc
Q 004113 115 LKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYD 194 (773)
Q Consensus 115 ~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~ 194 (773)
|+|++..+...+. ..|..+.+|+||+|+|||||||++||+|.++. + ..+...+.
T Consensus 4 WgL~rI~~~~~~~-~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-------~------------------~~~~~~v~ 57 (546)
T 2qtw_B 4 WNLERITPPRYRA-DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------M------------------VTDFENVP 57 (546)
T ss_dssp HHHHHTSCSSCC---------CCTTSEEEEEESCCCTTSTTTTTTE-------E------------------EEEEECCC
T ss_pred CChhhcCCCcccc-hhcccCCCCCCcEEEEECCCCCCCChHHcccc-------c------------------ccCccccc
Confidence 4454443222222 47888999999999999999999999998531 0 00111111
Q ss_pred ccccccCC-CCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh
Q 004113 195 IEDDVVAN-GQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA 273 (773)
Q Consensus 195 ~~~~~~~~-~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~ 273 (773)
+.+. .+ .....|..||||||||||+|+. .||||+|+|+.+|+++..+....+++++||+|+++
T Consensus 58 ~~dg--~~f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~ 121 (546)
T 2qtw_B 58 EEDG--TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRK 121 (546)
T ss_dssp CCC---------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHH
T ss_pred CCCC--ccccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHH
Confidence 1000 00 0235678999999999999873 69999999999999988766788999999999997
Q ss_pred ------CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCcEEEEcccccCccee
Q 004113 274 ------DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG-SVVNFAPWIFTVAASTIDRDFE 346 (773)
Q Consensus 274 ------~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~ 346 (773)
.+++|||||||+.. ...+..++.++.++|++||+||||+|.+.. ..+...|++|+|||++.+...
T Consensus 122 ~~~~~~~g~~VINmSlGg~~-------s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~- 193 (546)
T 2qtw_B 122 SQLVQPVGPLVVLLPLAGGY-------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP- 193 (546)
T ss_dssp HHHHSCCSCEEEEECEEEEC-------CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-
T ss_pred hhhhccCCCeEEEecCCCCC-------cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-
Confidence 48999999999643 367778889999999999999999997542 235567999999996542100
Q ss_pred eEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcc
Q 004113 347 SDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDG 426 (773)
Q Consensus 347 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~ 426 (773)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCC
Q 004113 427 VKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLT 506 (773)
Q Consensus 427 ~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 506 (773)
...-..||++||
T Consensus 194 ----------------------------------------------------------------a~~s~~fSn~G~---- 205 (546)
T 2qtw_B 194 ----------------------------------------------------------------VTLGTLGTNFGR---- 205 (546)
T ss_dssp ----------------------------------------------------------------CEETTEECCBST----
T ss_pred ----------------------------------------------------------------ccccCCcCCCCC----
Confidence 000112899997
Q ss_pred CCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 004113 507 RNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTN 586 (773)
Q Consensus 507 d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~ 586 (773)
||||+|||++|+++++... +.|..++|||||||||||++|||+|++|+|++++||++|++||.+..
T Consensus 206 ----~vDI~APG~~I~St~~~~~----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~ 271 (546)
T 2qtw_B 206 ----CVDLFAPGEDIIGASSDCS----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 271 (546)
T ss_dssp ----TCCEEEECSSEEEECTTST----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESC
T ss_pred ----cceEEecCccEEeeccCCC----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 4599999999999987632 57999999999999999999999999999999999999999998754
Q ss_pred CCCCccc------cCC---CCCCCCCCCCccc--ccccccCC
Q 004113 587 NLRAPIT------TNS---GAAATPYDFGAGE--VSTTASLQ 617 (773)
Q Consensus 587 ~~g~~~~------~~~---~~~~~~~~~G~G~--id~~~A~~ 617 (773)
.....+. ... ........+|+|+ .++..+..
T Consensus 272 i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 272 INEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp SCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred cCCccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 3221110 000 0111345678888 77777665
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-45 Score=384.56 Aligned_cols=232 Identities=29% Similarity=0.368 Sum_probs=197.3
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
..|+.. +|+||+|||||||||++||+|.+ ++...++|.. ...|
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~---------~~~d 66 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEG---------------------------RAKQIKSYAS---------TARD 66 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTT---------------------------CEEEEEECSS---------SSSC
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhcc---------------------------ccccccCCCC---------CCCC
Confidence 456555 89999999999999999999974 2334444432 2338
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCC-------CcEEEe
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADG-------VDVLSL 281 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g-------~dVIN~ 281 (773)
..||||||||||+|+. .||||+|+|+.+|+++..+.+..++++++++|+++++ ++||||
T Consensus 67 ~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~ 132 (279)
T 3f7m_A 67 GHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASM 132 (279)
T ss_dssp SSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEE
T ss_pred CCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEe
Confidence 8999999999999863 7999999999999998887789999999999999876 899999
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-ccCCCcEEEEcccccCcceeeEEEECCceEEeee
Q 004113 282 SLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSV-VNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGE 360 (773)
Q Consensus 282 SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~ 360 (773)
|||... ...+..++.++.++|++||+||||+|...... +...+++|+|||++.
T Consensus 133 S~g~~~-------~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------- 186 (279)
T 3f7m_A 133 SLGGGY-------SAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS------------------- 186 (279)
T ss_dssp CCCEEC-------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------
T ss_pred CCCcCc-------cHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC-------------------
Confidence 999643 36778888999999999999999999764333 556789999998532
Q ss_pred eeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeC
Q 004113 361 SINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDD 440 (773)
Q Consensus 361 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~ 440 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCcc
Q 004113 441 QSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVN 520 (773)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~ 520 (773)
.+.++.||++||.. ||+|||++
T Consensus 187 --------------------------------------------------~~~~~~~S~~g~~~--------di~ApG~~ 208 (279)
T 3f7m_A 187 --------------------------------------------------NDVRSTFSNYGRVV--------DIFAPGTS 208 (279)
T ss_dssp --------------------------------------------------TSBBCTTCCBSTTC--------CEEEECSS
T ss_pred --------------------------------------------------CCCCCCCCCCCCCC--------eEEECCCC
Confidence 14678999999955 99999999
Q ss_pred EEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 004113 521 ILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNL 588 (773)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~ 588 (773)
|+++++. +.|..++|||||||+|||++|||+|++|+ ++++||++|++||++....
T Consensus 209 i~s~~~~------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~~ 263 (279)
T 3f7m_A 209 ITSTWIG------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVLT 263 (279)
T ss_dssp EEEECGG------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCCB
T ss_pred eEeecCC------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccccc
Confidence 9999987 78999999999999999999999999999 9999999999999986443
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=411.00 Aligned_cols=320 Identities=18% Similarity=0.205 Sum_probs=204.1
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
...+|..+++|+||+|||||||||++||||.++- . .+.++|.++.. +....
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~------------~--------------~~~~~~~~~~~---dp~p~ 109 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV------------R--------------PGSKNVVTGSD---DPTPT 109 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB------------C--------------SCCBCTTTSSS---CCCCC
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc------------c--------------cCcceeecCCC---CCCCC
Confidence 3468999999999999999999999999997531 0 11222322221 11233
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHH-HHHhhCCCcEEEeccCC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAF-DDAIADGVDVLSLSLGG 285 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai-~~a~~~g~dVIN~SlG~ 285 (773)
.|..+|||||||||||.. + +..+.||||+|+|+.+|++++.+....++++.++ +++..++++|||+|||.
T Consensus 110 ~~~~gHGThVAGiIAa~~-n--------~~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~ 180 (600)
T 3hjr_A 110 DPDTAHGTSVSGIIAAVD-N--------AIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGM 180 (600)
T ss_dssp STTCCHHHHHHHHHHCCS-S--------SSSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCC
T ss_pred CCCCChHHHHHHHHhEeC-C--------CCCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCc
Confidence 467899999999999863 2 2235899999999999999988777888887776 56778899999999997
Q ss_pred CCCCCCCCCCcH-----HHHHHHHH--HhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEe
Q 004113 286 SAGIVRPLTDDP-----IALGAFHA--VEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIK 358 (773)
Q Consensus 286 ~~~~~~~~~~~~-----~~~~~~~a--~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~ 358 (773)
... .....+. +..++..+ ..+|+++|+||||.+....... +.+.+. +++
T Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~~------------g~~---- 236 (600)
T 3hjr_A 181 SVV--DPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNRT------------GNG---- 236 (600)
T ss_dssp CCS--SCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEEE------------SSC----
T ss_pred ccc--CCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------cccccC------------CCC----
Confidence 642 1222222 22222222 2589999999999764211000 000000 000
Q ss_pred eeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEE
Q 004113 359 GESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVI 438 (773)
Q Consensus 359 g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~ 438 (773)
..++ ...|.... +......|.+.
T Consensus 237 ------------~~~~----------------~~~~~~d~--~~~~~~~IsVg--------------------------- 259 (600)
T 3hjr_A 237 ------------PKLP----------------FENSNLDP--SNSNFWNLVVS--------------------------- 259 (600)
T ss_dssp ------------CCCC----------------SSBTTSSG--GGGSSSEEEEE---------------------------
T ss_pred ------------CCCC----------------cccccccC--ccccCcceEEe---------------------------
Confidence 0000 00011000 00000111111
Q ss_pred eCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCC
Q 004113 439 DDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPG 518 (773)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG 518 (773)
.....+.++.||++|+.. +++|||
T Consensus 260 ------------------------------------------------A~~~~g~~a~yS~~G~~v--------~~~apg 283 (600)
T 3hjr_A 260 ------------------------------------------------ALNADGVRSSYSSVGSNI--------FLSATG 283 (600)
T ss_dssp ------------------------------------------------EECTTSSBCTTCCBCTTC--------CEEEEC
T ss_pred ------------------------------------------------eecCCCCEeecccCCcce--------eeccCC
Confidence 112346889999999987 899999
Q ss_pred ccE--------EeeecCCCCC---------CC-----CCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 004113 519 VNI--------LAAWMGNDTG---------EA-----PEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576 (773)
Q Consensus 519 ~~I--------~sa~~~~~~~---------~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~ 576 (773)
..+ ....++.... .. ........|..++|||||||||||++|||+|++|+|+++|||+
T Consensus 284 ~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~ 363 (600)
T 3hjr_A 284 GEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRD 363 (600)
T ss_dssp CSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHH
T ss_pred CCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHH
Confidence 762 2222211000 00 0122335688999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCccc--------------------cCCCCCCCCCCCCcccccccccCCCcee
Q 004113 577 AVMTTATQTNNLRAPIT--------------------TNSGAAATPYDFGAGEVSTTASLQPGLV 621 (773)
Q Consensus 577 ~L~~TA~~~~~~g~~~~--------------------~~~~~~~~~~~~G~G~id~~~A~~~~lv 621 (773)
+|++||++++....|+. ...........||||+||+.+|++.+..
T Consensus 364 ~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~ 428 (600)
T 3hjr_A 364 LLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAAN 428 (600)
T ss_dssp HHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTT
T ss_pred HHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhc
Confidence 99999999987654422 1111223456899999999999985433
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-25 Score=251.83 Aligned_cols=101 Identities=24% Similarity=0.392 Sum_probs=77.7
Q ss_pred ceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh---CCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEE
Q 004113 236 GTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA---DGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITV 312 (773)
Q Consensus 236 ~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~---~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~v 312 (773)
..+.||||+|+|+.|++. ....+++++|+||++ ++++|||||||.........+.+.+..++.+|..+||+|
T Consensus 272 ~~~~gvAp~a~i~~~~~~-----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 272 EVAGALAPGAKIAVYFAP-----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHHHCTTSEEEEEECC-----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhhhccCCCCeEEEEEcC-----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEE
Confidence 346899999999999973 245789999999998 799999999998642001111245666777888999999
Q ss_pred EEecCCCCCCC--------CCcccCCCcEEEEccccc
Q 004113 313 VCSAGNDGPSS--------GSVVNFAPWIFTVAASTI 341 (773)
Q Consensus 313 V~aAGN~g~~~--------~~~~~~~p~vitVga~~~ 341 (773)
|+||||+|... ...+...|+|++||+++.
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 99999999643 234456799999999864
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=209.09 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=79.6
Q ss_pred eeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEeccCCCCCC-CCCCCCcHHHHHHHHHHhCCcEEEEec
Q 004113 239 IGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSAGI-VRPLTDDPIALGAFHAVEHGITVVCSA 316 (773)
Q Consensus 239 ~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~-~~~~~~~~~~~~~~~a~~~Gi~vV~aA 316 (773)
..+||+++++.|++.+.. .+..++++.+|+||++ ++++|||||||..... ....+.+.+..++.+|..+||+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~~-~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~As 168 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQS-ASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSS 168 (372)
T ss_dssp HHTTSCEEEEEEEEECTT-SSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCCCcEEEEEeCCCC-CcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 447899999999998654 4677899999999998 8999999999975310 001223566777788889999999999
Q ss_pred CCCCCCCC-------------CcccCCCcEEEEcccccC
Q 004113 317 GNDGPSSG-------------SVVNFAPWIFTVAASTID 342 (773)
Q Consensus 317 GN~g~~~~-------------~~~~~~p~vitVga~~~~ 342 (773)
||+|...+ ..+...|++++||+++..
T Consensus 169 Gd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 169 GDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp CSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 99996532 234567999999998653
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.7e-10 Score=126.89 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=62.8
Q ss_pred eeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh--hCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEec
Q 004113 239 IGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI--ADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSA 316 (773)
Q Consensus 239 ~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~--~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aA 316 (773)
.++++...++.|..-... .....++..+++.. .+.++|||+|||.........+.+.+...+.++..+||.|++|+
T Consensus 262 ~a~~~~i~~~~~~~~g~~--~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 262 MSAGANISTWVYSSPGRH--EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHHSTTSEEEEECCCSCC--TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hccCCCceEEEEecCCcc--cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 445556665555432111 12233444444433 35689999999987521111222445556677889999999999
Q ss_pred CCCCCCC----------CCcccCCCcEEEEccccc
Q 004113 317 GNDGPSS----------GSVVNFAPWIFTVAASTI 341 (773)
Q Consensus 317 GN~g~~~----------~~~~~~~p~vitVga~~~ 341 (773)
||+|... ...+...|||++||+++.
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9999643 134456799999999864
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=97.57 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcc--cCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCcee
Q 004113 27 GSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKW--KKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVL 104 (773)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~ 104 (773)
...+++|||+|++.. . ......|.+++.+++.+ ...+++++|++.|+||+++|+++++++|+++|+|.+||+++.+
T Consensus 34 ~~ip~~YIV~lk~~~-~-~~~~~~h~~~l~s~~~~~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v 111 (114)
T 2w2n_P 34 WRLPGTYVVVLKEET-H-LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 111 (114)
T ss_dssp GEEEEEEEEEECTTC-C-HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred cCCCCcEEEEECCCC-C-HHHHHHHHHHHHHHhhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceE
Confidence 346789999999877 4 33456788898888766 3478999999999999999999999999999999999999887
Q ss_pred cc
Q 004113 105 QL 106 (773)
Q Consensus 105 ~~ 106 (773)
+.
T Consensus 112 ~~ 113 (114)
T 2w2n_P 112 FA 113 (114)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.89 E-value=4.4e-09 Score=87.82 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceecc
Q 004113 27 GSKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQL 106 (773)
Q Consensus 27 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~~ 106 (773)
+..+++|||.|+++. . .... .+++++..+.+++++|++ |+||+++++++++++|+++|+|.+||+++.+++
T Consensus 5 ~~i~~~YIV~~k~~~-~----~~~~---~~~~~~~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~ 75 (80)
T 3cnq_P 5 SNGEKKYIVGFKQGF-K----SCAK---KEDVISEKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRA 75 (80)
T ss_dssp ---CCEEEEEECTTC-C----SHHH---HHHHHHTTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEE
T ss_pred ccCCCCEEEEECCCC-C----hHHH---HHHHHHHcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEE
Confidence 346799999999887 3 1111 123344456789999998 999999999999999999999999999999988
Q ss_pred cccc
Q 004113 107 HTTR 110 (773)
Q Consensus 107 ~~~~ 110 (773)
+++.
T Consensus 76 ~tt~ 79 (80)
T 3cnq_P 76 LSAT 79 (80)
T ss_dssp CCC-
T ss_pred eeec
Confidence 7654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-08 Score=89.77 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=60.8
Q ss_pred CCCceEEEEeccCCCCCCCchhHHHHHHHHHhcc--cCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceec
Q 004113 28 SKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKW--KKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQ 105 (773)
Q Consensus 28 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~ 105 (773)
..+++|||.|+++. . ......+.+.+.+..+. .+.+++++|++.||||+++++++++++|+++|+|.+|++++.++
T Consensus 45 ~Ip~~YIV~~K~~~-~-~~~~~~~~~~l~~~~~~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~ 122 (124)
T 2qtw_A 45 RLPGTYVVVLKEET-H-LSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 122 (124)
T ss_dssp EEEEEEEEEECTTC-C-HHHHHHHHHHHHHHHHHTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred CCCCCEEEEECCCC-C-HHHHHHHHHHHHHHHhhcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEe
Confidence 46789999999887 4 22233444455554433 44789999999999999999999999999999999999998775
Q ss_pred c
Q 004113 106 L 106 (773)
Q Consensus 106 ~ 106 (773)
.
T Consensus 123 a 123 (124)
T 2qtw_A 123 A 123 (124)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-07 Score=75.38 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=55.0
Q ss_pred ceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEec-ceeeEEEEEcCHHHHHHHhCC--CCeEEEecCceecc
Q 004113 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYK-HGFSGFAARLSAEEAHALSKK--PGVVSIFPDPVLQL 106 (773)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~ng~s~~l~~~~i~~L~~~--p~V~~V~~~~~~~~ 106 (773)
+.|||.|+++. . ......+.+++.. .+.++.+.|+ ..|+||+++++++.+++|+++ |.|.+||+++.+.+
T Consensus 3 ~sYIV~lk~~~-~-~~~~~~~~~~~~~----~gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 3 GKFIVIFKNDV-S-EDKIRETKDEVIA----EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp EEEEEEECTTC-C-HHHHHHHHHHHHH----HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred ceEEEEECCCC-C-HHHHHHHHHHHHh----hCCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 68999999887 3 2223334444443 3457899994 789999999999999999999 89999999988754
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.9e-06 Score=80.49 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=72.2
Q ss_pred ccCCCCCCccccc-------ccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc--cc----cccCccccEEEe
Q 004113 391 ARNCDLDSLAGAL-------VKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR--AV----ASSYGTFPLTVI 457 (773)
Q Consensus 391 ~~~c~~~~~~~~~-------~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~--~~----~~~~~~~p~~~i 457 (773)
...|.+....... .+++|+|++||. .|+|.+|..+++++||.++|+||+... .. ......||+++|
T Consensus 83 ~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~-~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 83 LNACNPHTNFTVPTVWGSTVQVSWLALIQRGG-GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp TTCCSTTCCBCCCBCTTSSCBCCEEEEEESCT-TCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred cCCCCCCccccCCcccccccCCCeEEEEECCC-CcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 4679887643222 478999999964 167999999999999999999998521 11 123347999999
Q ss_pred cHHHHHHHHHHHhcCCCceEEEeeCe
Q 004113 458 SSKEAAEILAYINSKRNPVATILPTV 483 (773)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~i~~~~ 483 (773)
+..+|+.|++++.++...+++|....
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999988888777654
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.69 E-value=3.9e-05 Score=60.72 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=52.5
Q ss_pred ceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceec
Q 004113 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQ 105 (773)
Q Consensus 31 ~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~ 105 (773)
.+|||.+++.. . .++.++..+.++.++|.. +++++++||++.++.|+++|+|++||+|...+
T Consensus 2 ~~~IV~f~~~~-~-----------~~~~i~~~gG~i~~~~~~-I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAK-F-----------NPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGG-C-----------CGGGGGGGTCEEEEECSS-SSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcc-h-----------hHHHHHHCCCEEEEEecC-CcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 48999998744 1 233566677899999987 99999999999999999999999999998764
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.048 Score=59.92 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=56.9
Q ss_pred cccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccc-----ccCccccEEEecHHHHHHHHHHHh
Q 004113 399 LAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVA-----SSYGTFPLTVISSKEAAEILAYIN 470 (773)
Q Consensus 399 ~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~-----~~~~~~p~~~i~~~~~~~l~~~~~ 470 (773)
+...+++|||+|++++. |.+..|..++..+||.|+|++++...... .....+|.+.++.++++.|+.++.
T Consensus 108 ~~~~dv~GkIvlv~~g~--~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 108 VAGKDLNGKIALIQRGN--ISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTSCCTTSEEEEECCS--SCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCcCceEEEEeCCC--CCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 33458999999999965 57899999999999999999998642211 134579999999999999999884
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.12 Score=45.96 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=52.2
Q ss_pred ccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEE-CCceeEE
Q 004113 682 EGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWS-NGKYKVR 760 (773)
Q Consensus 682 ~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~-~~~~~v~ 760 (773)
++.+.+++++|+| ..+..|+.... +- .+++|+..++ ++||++.++|+|.+.. .+.+.+.|.+. ++...+.
T Consensus 41 ~~~~~~~~l~N~g-~~~~~f~~~~~--~~--F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 41 YSTQKILLVRNIG-NKNAVFHIKTC--RP--FSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp SCEEEEEEEECCS-SSCEEEEEECC--TT--EEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEEC
T ss_pred CeEEEEEEEEECC-CCCEEEEEecC--CC--eEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEE
Confidence 3788899999999 88888877654 33 5558999998 6799999999998852 23345555543 4445555
Q ss_pred EEE
Q 004113 761 SLF 763 (773)
Q Consensus 761 ~P~ 763 (773)
+++
T Consensus 112 v~L 114 (122)
T 2ys4_A 112 VSL 114 (122)
T ss_dssp CEE
T ss_pred EEE
Confidence 544
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.14 Score=56.56 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=59.5
Q ss_pred cccccceEEEEecCCCCC-------chhhh----hcccccCCceEEEEEeCCCcc----------ccccCccccEEEecH
Q 004113 401 GALVKGKIVLCDNDDDMG-------SVVDK----KDGVKSLGGVGVIVIDDQSRA----------VASSYGTFPLTVISS 459 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~-------~~~~k----~~~~~~~Ga~g~i~~~~~~~~----------~~~~~~~~p~~~i~~ 459 (773)
+.+++|||||+.++.+.. .+..| ..++.++||.|+|++++.... .......+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 568999999999876531 23344 346899999999999975411 111235799999999
Q ss_pred HHHHHHHHHHhcCCCceEEEeeC
Q 004113 460 KEAAEILAYINSKRNPVATILPT 482 (773)
Q Consensus 460 ~~~~~l~~~~~~~~~~~~~i~~~ 482 (773)
++++.|+..+..+....+++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998776555555443
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=92.86 E-value=0.091 Score=61.10 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=54.7
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc-----------------------cc-----ccc----
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR-----------------------AV-----ASS---- 448 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~-----------------------~~-----~~~---- 448 (773)
..+++|||+|+++|. |.+.+|..+|..+||.|+|+|++..+ .. ..+
T Consensus 150 ~~~v~GkIvlv~~G~--~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TP 227 (707)
T 3fed_A 150 GINCTGKIVIARYGK--IFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTP 227 (707)
T ss_dssp CCCCTTCEEEEECCS--SCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCT
T ss_pred CCCCCCeEEEEECCC--CCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCC
Confidence 457999999999976 67999999999999999999986220 00 011
Q ss_pred ------------------CccccEEEecHHHHHHHHHHHhc
Q 004113 449 ------------------YGTFPLTVISSKEAAEILAYINS 471 (773)
Q Consensus 449 ------------------~~~~p~~~i~~~~~~~l~~~~~~ 471 (773)
...||++.|+..+++.|+..+..
T Consensus 228 G~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 228 GYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 13689999999999999987654
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.76 E-value=1.1 Score=40.65 Aligned_cols=87 Identities=5% Similarity=-0.059 Sum_probs=62.5
Q ss_pred ccEEEEEEEEeccCCCCeEEEEEEeCC----CCcEEEEecCeEEEccCCcEEEEEEEEEeccC----C-C-CCcEEEEEE
Q 004113 682 EGRTISRTVTNVAGNNETIYTVAVDAP----QGLNVKVIPEELQFTKSGQKLSYQVTFTSALS----P-L-KEDVFGSIT 751 (773)
Q Consensus 682 ~~~~~~~tvtn~~~~~~~ty~~~~~~~----~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~----~-~-~~~~~G~l~ 751 (773)
+..+-+++++|+| ..+.+|++..... ..--++++|..-++ ++||+.+++|++...+. . . ..-++--|+
T Consensus 43 ~~~~~~l~I~Ntg-~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLv 120 (140)
T 3qbt_B 43 QLQKEKFQISNNG-QVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILV 120 (140)
T ss_dssp CCEEEEEEEEECS-SSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEE
T ss_pred eeeeeEEEEEcCC-ccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEE
Confidence 4678889999999 9999999985321 11235668999988 67999999999987531 0 0 122345567
Q ss_pred EE-CCceeEEEEEEEEeeCC
Q 004113 752 WS-NGKYKVRSLFVVSSKSS 770 (773)
Q Consensus 752 ~~-~~~~~v~~P~~~~~~~~ 770 (773)
+. +++++..+|+...+.+|
T Consensus 121 L~Ve~G~d~fI~v~g~~~ps 140 (140)
T 3qbt_B 121 LHLDRGKDYFLTISGNYLPS 140 (140)
T ss_dssp EEETTSCEEEEEEEEEECCC
T ss_pred EEeecCCcEEEEEeccccCC
Confidence 65 67788899998887664
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=90.13 E-value=0.3 Score=56.13 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=53.1
Q ss_pred ccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc-c--------------cc-------------------
Q 004113 402 ALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA-V--------------AS------------------- 447 (773)
Q Consensus 402 ~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~--------------~~------------------- 447 (773)
.+++|||+|++++. |.+..|..++..+||.|+|++++.... . ..
T Consensus 128 vdv~GkIvlv~~g~--~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~ 205 (640)
T 3kas_A 128 TPVNGSIVIVRAGK--ITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR 205 (640)
T ss_dssp SCCTTSEEEEESCS--SCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCS
T ss_pred cccCCcEEEEecCC--CCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccc
Confidence 47999999999964 679999999999999999999975310 0 00
Q ss_pred --cCccccEEEecHHHHHHHHHHHh
Q 004113 448 --SYGTFPLTVISSKEAAEILAYIN 470 (773)
Q Consensus 448 --~~~~~p~~~i~~~~~~~l~~~~~ 470 (773)
....||+..|+..+++.|+..+.
T Consensus 206 ~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 206 SSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccCCCCCCEEecCHHHHHHHHHHcc
Confidence 01268999999999999987553
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.10 E-value=0.75 Score=39.82 Aligned_cols=81 Identities=11% Similarity=0.167 Sum_probs=53.1
Q ss_pred CCCCeEEEeccCCCccEEEEEEEEeccCCCCeEEEEEEeC-CCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcE
Q 004113 668 INYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDA-PQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDV 746 (773)
Q Consensus 668 ln~ps~~~~~~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 746 (773)
++...+-++.+.-++..+.+++++|.| +.+..|+..... +.+...+++|..-.+ ++|++++++|+|.+.. .+. .
T Consensus 12 ~~~~~ldFG~v~~g~~~~~~~~l~N~g-~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~--~g~-f 86 (112)
T 2e6j_A 12 FNFELLDIGKVFTGSAHCYEAILYNKG-SIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII--LGN-F 86 (112)
T ss_dssp ESCSEEEEEEEESSCCEEEEEEEEECC-SSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC--CEE-E
T ss_pred ECcccEecEeEEECCEEEEEEEEEECC-cceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC--cce-E
Confidence 334444444333234778889999999 899999984321 112346678999988 5799999999998853 233 3
Q ss_pred EEEEEEE
Q 004113 747 FGSITWS 753 (773)
Q Consensus 747 ~G~l~~~ 753 (773)
.=.|++.
T Consensus 87 ~~~i~v~ 93 (112)
T 2e6j_A 87 EEEFLVN 93 (112)
T ss_dssp EEEECEE
T ss_pred EEEEEEE
Confidence 3446654
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=86.19 E-value=0.49 Score=52.06 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=26.7
Q ss_pred cCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecC
Q 004113 489 KPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMG 527 (773)
Q Consensus 489 ~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~ 527 (773)
...+.++.||++||.. ||+|||++|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 4457899999999855 999999999999874
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=85.98 E-value=0.35 Score=59.45 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=22.6
Q ss_pred CCCCCCcEEEEEccCCCCCCCCCC
Q 004113 134 QDQESDTIIGILDTGVWPESESFN 157 (773)
Q Consensus 134 ~~~G~Gv~VaVIDtGid~~Hp~f~ 157 (773)
.+.|+||+|||+|||||+.+|.|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 678999999999999999999986
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=85.13 E-value=4 Score=40.02 Aligned_cols=86 Identities=5% Similarity=-0.013 Sum_probs=55.8
Q ss_pred cCCCccEEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEeccCCCCCcEEEEEEEE--C-
Q 004113 678 FDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSALSPLKEDVFGSITWS--N- 754 (773)
Q Consensus 678 ~~~~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~l~~~--~- 754 (773)
+..++..+.+++++|.| +.+.+++... .|+-++...+| -++ ++||+.+++|+++......-+...+.|++. +
T Consensus 15 v~~g~~~~~~~~i~N~g-~~pl~i~~~~-~p~~~~~~~~~--~~I-~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~ 89 (220)
T 2qsv_A 15 SMPEDEGVVRLVVNNTD-ESDLQVAVVS-LPSFVSLDDRA--FRL-QAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSP 89 (220)
T ss_dssp BCTTCCCEEEEEEEECS-SSCEEEEEEE-CCTTEECSCCE--EEE-CSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECT
T ss_pred ccCCCcceEEEEEEeCC-CCceEEEecc-CCCceEeeeCc--cee-CCCCceEEEEEEcchhcccCCceeeEEEEEEEcC
Confidence 43344677899999999 8888887653 36665554333 444 579999999999886543345556767764 3
Q ss_pred -Cc--eeEEEEEEEEee
Q 004113 755 -GK--YKVRSLFVVSSK 768 (773)
Q Consensus 755 -~~--~~v~~P~~~~~~ 768 (773)
+. ...++|+.....
T Consensus 90 ~~~~~~~~~i~v~g~v~ 106 (220)
T 2qsv_A 90 ETGKKAVDSVMVSLPLV 106 (220)
T ss_dssp TTCCEEEEEEEEEEEEC
T ss_pred CCCcccccEEEEEEEEc
Confidence 32 244666665443
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=82.77 E-value=15 Score=38.87 Aligned_cols=88 Identities=5% Similarity=-0.013 Sum_probs=61.2
Q ss_pred CccEEEEEEEEeccCCCCeEEEEEEeCCCCcE----EEEecCeEEEccCCcEEEEEEEEEeccCC----C--CCcEEEEE
Q 004113 681 KEGRTISRTVTNVAGNNETIYTVAVDAPQGLN----VKVIPEELQFTKSGQKLSYQVTFTSALSP----L--KEDVFGSI 750 (773)
Q Consensus 681 ~~~~~~~~tvtn~~~~~~~ty~~~~~~~~g~~----v~v~p~~~~~~~~~~~~~~~vt~~~~~~~----~--~~~~~G~l 750 (773)
.+..+-++|++|+| ..+.+|++.-....... ++++|..-++ .+||+++++|++...+.. + ..-.+--|
T Consensus 45 ~~~~~~~l~i~N~g-~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diL 122 (366)
T 3qis_A 45 RQLQKEKFQISNNG-QVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDIL 122 (366)
T ss_dssp TCCEEEEEEEEECS-SSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEE
T ss_pred CCeEEEEEEEEecC-CceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEEECHHHHHHHhcCccccceEE
Confidence 44788899999999 99999999654322221 6778999988 578999999999876410 0 12234456
Q ss_pred EEE-CCceeEEEEEEEEeeCC
Q 004113 751 TWS-NGKYKVRSLFVVSSKSS 770 (773)
Q Consensus 751 ~~~-~~~~~v~~P~~~~~~~~ 770 (773)
++. +++++.-+|+-..+..+
T Consensus 123 vL~ve~G~d~FI~v~~~~~~s 143 (366)
T 3qis_A 123 VLHLDRGKDYFLTISGNYLPS 143 (366)
T ss_dssp EEEETTSCEEEEEEEEEECCC
T ss_pred EEEEeCCCcEEEEeccccCCc
Confidence 664 56677778877766544
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=82.76 E-value=6 Score=34.53 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=43.5
Q ss_pred EEEEEEEEeccCCCCeEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc
Q 004113 684 RTISRTVTNVAGNNETIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL 739 (773)
Q Consensus 684 ~~~~~tvtn~~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 739 (773)
-..++.+.|.. ..+.+|+++++..+++++. .+..+++ +++|+.++.|.+..+.
T Consensus 33 N~Ytlki~Nkt-~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 33 NTYTLKVINKT-QQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEECS-SSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEECC-CCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 45788999999 8999999999988777664 3556777 6799999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 773 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 6e-36 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-12 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 6e-07 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-10 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-10 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 0.001 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-10 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 4e-05 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 9e-10 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 3e-09 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 5e-09 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 0.002 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 6e-05 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 4e-07 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 7e-06 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 9e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 2e-04 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 0.002 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 139 bits (349), Expect = 6e-36
Identities = 85/505 (16%), Positives = 155/505 (30%), Gaps = 102/505 (20%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
+ I I+D+G N + GT N+G N
Sbjct: 22 GNRTICIIDSGYDRSHNDLNANN-------VTGTNNSGTGNWY----------------- 57
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
P + HGTHVA T A A G+ + I + +V +
Sbjct: 58 -------QPGNNNAHGTHVAGTIAAIA-NNEGVVGVMPN------QNANIHIVKVFNEAG 103
Query: 258 GCTGSNILAAFDDAIADG-VDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSA 316
S+++AA D + G +V+++SLG + +G+ ++ +A
Sbjct: 104 WGYSSSLVAAIDTCVNSGGANVVTMSLG------GSGSTTTERNALNTHYNNGVLLIAAA 157
Query: 317 GNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLI 376
GN G SS S + +VAA + D + FS + +
Sbjct: 158 GNAGDSSYSYPASYDSVMSVAAVDSNLDHAA----------------FSQY--TDQVEIS 199
Query: 377 YAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436
A R D+ + +V + G+ + G +
Sbjct: 200 GPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYA--PAPINASATGAL 257
Query: 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAY 496
+ + ++ + ++ + I T + I Y
Sbjct: 258 AECT--------VNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVY 309
Query: 497 FSARGPSPLTRNIL--KPDITAPGVNILAAWMGNDTGEAPEGKEP-----PLFNVISGTS 549
++ P ++ DIT P V++ A + + + +GTS
Sbjct: 310 SNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTS 369
Query: 550 MSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGE 609
M+ PH+SGV + +P S S++++A+ TA A G G
Sbjct: 370 MATPHVSGVATLVWSYHPECSASQVRAALNATADDL-----------SVAGRDNQTGYGM 418
Query: 610 VSTTASLQPGLVYETTTLDYLNFLC 634
++ A+ YL+ C
Sbjct: 419 INAVAA-----------KAYLDESC 432
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 67.8 bits (164), Expect = 3e-12
Identities = 54/290 (18%), Positives = 94/290 (32%), Gaps = 34/290 (11%)
Query: 484 SVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPL-- 541
++ Y +A FS+R + APGV IL+ G D+ E
Sbjct: 318 ALDYYGGTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPAT 369
Query: 542 ----FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSG 597
++ GTSM+ PH++GVVA + + P P +I+ + TA +
Sbjct: 370 NGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA-----------FDFN 418
Query: 598 AAATPYDFGAGEVSTTASLQPGLVYETTTLD----YLNFLCYYGYDLSKIKMIATTIPKD 653
+D G G V A+LQ L + + + +G + M+
Sbjct: 419 GNGWDHDTGYGLVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCY 478
Query: 654 FACPKDSGVDSISNINYPSIAVSSFDGKEGRTISRTVTNVAGNNETIYTVAVDAPQGL-- 711
+A G+ +I+ + + + + + +
Sbjct: 479 YAKTGPDGIARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASF 538
Query: 712 -NVKVIPEELQFTKSGQKLSYQVTFTSALSPLK-EDVFGSITWSNGKYKV 759
V P+ Q + QV F++ LS LK G Y
Sbjct: 539 VGFGVSPDATQLN-VNFNSTLQVKFSTNLSTLKDPQFVVVDPLLRGVYGR 587
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 50.4 bits (119), Expect = 6e-07
Identities = 54/341 (15%), Positives = 101/341 (29%), Gaps = 79/341 (23%)
Query: 31 GVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALS 90
G +V + ++ + +++ + I+ +G + + ++ AL+
Sbjct: 32 GKILVGYNDRSEVDKIVKAVNGKVV------LELPQIKVVSIKLNGMTVKQAYDKIKALA 85
Query: 91 KKPGVVSIFPDPVLQLHTTRSW----DFLKIQTDVLIDSVPSPSLNSQDQE--------- 137
G+ + P +L D KI+ L + ++
Sbjct: 86 L-KGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVT 144
Query: 138 ---------SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKII 188
++ I+ ++DTGV + +
Sbjct: 145 QQLWEEASGTNIIVAVVDTGVDGTHPDLEGQVIA-------------------------- 178
Query: 189 GARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIA 248
G R E+ G GTHVA T A + +G +PG++I
Sbjct: 179 GYRPAFDEELP--AGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIM 227
Query: 249 VYRVCSPEYGCTGS------NILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGA 302
+ G+ + A A G V++ S GG +
Sbjct: 228 PIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGG------WGYSYTMKEAF 281
Query: 303 FHAVEHGITVVCSA-GNDGPSSGSVVNFAPWIFTVAASTID 342
+A+EHG+ +V SA N S P + VAA
Sbjct: 282 DYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 60.7 bits (145), Expect = 2e-10
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 511 KPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFS 570
+I+APG ++ + W +N ISGTSM+ PH+SG+ A I +NP+ S
Sbjct: 224 DIEISAPGSSVYSTWYNGG------------YNTISGTSMATPHVSGLAAKIWAENPSLS 271
Query: 571 PSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608
++++S + A + A Y G G
Sbjct: 272 NTQLRSNLQERAKSVDIK----GGYGAAIGDDYASGFG 305
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 60.3 bits (145), Expect = 2e-10
Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 34/136 (25%)
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPL 541
++V A FS+ G + ++ APG + + + N
Sbjct: 173 VIAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPTNTYAT--------- 215
Query: 542 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAAT 601
++GTSM+ PH++G A I ++P S S++++ + +TAT +
Sbjct: 216 ---LNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS-------------- 258
Query: 602 PYDFGAGEVSTTASLQ 617
+ +G G ++ A+ Q
Sbjct: 259 SFYYGKGLINVEAAAQ 274
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 39.5 bits (91), Expect = 0.001
Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 54/221 (24%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
++ + +LDTG+ N
Sbjct: 24 ANVKVAVLDTGIQASHPDLNVVG-----------------------------------GA 48
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
VA D GHGTH V G +G +P + +V +
Sbjct: 49 SFVAGEAYNTDGNGHGTH---------VAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSG 99
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
+ S I++ + A +G+DV + + + +A G+ VV +AG
Sbjct: 100 SGSYSGIVSGIEWATTNGMDV------INMSLGGASGSTAMKQAVDNAYARGVVVVAAAG 153
Query: 318 NDGPSSGSVVNFAPW----IFTVAASTIDRDFESDIVLGGN 354
N G S + P + V A + + S +G
Sbjct: 154 NSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAE 194
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 59.9 bits (144), Expect = 2e-10
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 34/136 (25%)
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPL 541
++V + A FS+ GP + D+ APGV+I + GN G
Sbjct: 174 VIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGNKYGA--------- 216
Query: 542 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAAT 601
+GTSM+ PH++G A I ++P ++ ++++S++ T T+ +
Sbjct: 217 ---YNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD-------------- 259
Query: 602 PYDFGAGEVSTTASLQ 617
+ +G G ++ A+ Q
Sbjct: 260 SFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 43.7 bits (102), Expect = 4e-05
Identities = 34/215 (15%), Positives = 61/215 (28%), Gaps = 45/215 (20%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
S+ + ++D+G+ GA E
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKVAG----------------------------GASMVPSET 55
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
+ +D HGTH V G + +G +P + + +V +
Sbjct: 56 N------PFQDNNSHGTH---------VAGTVAALNNSIGVLGVAPSASLYAVKVLGADG 100
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
S I+ + AIA+ +DV+++SLGG + V
Sbjct: 101 SGQYSWIINGIEWAIANNMDVINMSLGG--PSGSAALKAAVDKAVASGVVVVAAAGNEGT 158
Query: 318 NDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLG 352
+ S+ P + V A S +G
Sbjct: 159 SGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVG 193
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 58.4 bits (139), Expect = 9e-10
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 504 PLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAI- 562
P +KPD+ APG IL+A + + + GTSM+ P ++G VA +
Sbjct: 210 PTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLR 269
Query: 563 ----KHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 617
K++ T PS +K+A++ A + G + G G V+ SL
Sbjct: 270 EHFVKNRGITPKPSLLKAALIAGA-----------ADIGLGYPNGNQGWGRVTLDKSLN 317
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (135), Expect = 3e-09
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 546 SGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDF 605
+GTS S P +G++A N + +++ V+ T+ + TN + +
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 316
Query: 606 GAGEVSTTASLQ 617
G G + A +
Sbjct: 317 GYGLLDAGAMVA 328
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 55.7 bits (133), Expect = 5e-09
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 20/101 (19%)
Query: 483 VSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLF 542
++V A FS G DI APGVN+ + + G+
Sbjct: 169 MAVGATDQNNNRASFSQYGAGL--------DIVAPGVNVQSTYPGSTYASL--------- 211
Query: 543 NVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTAT 583
+GTSM+ PH++G A +K +NP++S +I++ + TAT
Sbjct: 212 ---NGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTAT 249
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 38.4 bits (88), Expect = 0.002
Identities = 33/147 (22%), Positives = 53/147 (36%), Gaps = 15/147 (10%)
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
V S +D GHGTHV G + +G +P + + +V
Sbjct: 48 SFVPGEPSTQDGNGHGTHV---------AGTIAALNNSIGVLGVAPSAELYAVKVLGASG 98
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
+ S+I + A +G+ V +LSL P + A G+ VV ++G
Sbjct: 99 SGSVSSIAQGLEWAGNNGMHVANLSL------GSPSPSATLEQAVNSATSRGVLVVAASG 152
Query: 318 NDGPSSGSVVNFAPWIFTVAASTIDRD 344
N G S S V A+ + +
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNN 179
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 53.4 bits (127), Expect = 3e-08
Identities = 42/203 (20%), Positives = 61/203 (30%), Gaps = 47/203 (23%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
S I ++DTGV + K +
Sbjct: 31 SGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDP------------------------ 66
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D+ HGTHVA AA + G+A P +RI R
Sbjct: 67 ---------MDLNNHGTHVAGIAAAETNNATGIAGMA--------PNTRILAVRALDRNG 109
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
T S+I A A G +V++LS + + +A G VV +AG
Sbjct: 110 SGTLSDIADAIIYAADSGAEVINLS------LGCDCHTTTLENAVNYAWNKGSVVVAAAG 163
Query: 318 NDGPSSGSVVNFAPWIFTVAAST 340
N+G S+ + V A
Sbjct: 164 NNGSSTTFEPASYENVIAVGAVD 186
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 43.4 bits (101), Expect = 6e-05
Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 35/136 (25%)
Query: 482 TVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPL 541
++V +A FS G D+ APGV+I++ GN
Sbjct: 179 VIAVGAVDQYDRLASFSNYGT--------WVDVVAPGVDIVSTITGNRYAY--------- 221
Query: 542 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAAT 601
+SGTSM+ PH++G+ A + Q EI+ A+ TA + + T
Sbjct: 222 ---MSGTSMASPHVAGLAALLASQGRN--NIEIRQAIEQTADKIS-------------GT 263
Query: 602 PYDFGAGEVSTTASLQ 617
F G +++ ++
Sbjct: 264 GTYFKYGRINSYNAVT 279
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 4e-07
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 1/108 (0%)
Query: 517 PGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576
V + G+ N GTS + P +GV + NP + +++
Sbjct: 232 SAVMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQY 291
Query: 577 AVMTTATQTNNLRAPITTNSGAAATP-YDFGAGEVSTTASLQPGLVYE 623
+ +A +S + +G G++ ++ +E
Sbjct: 292 LSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWE 339
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 542 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQ 584
ISGTSM+ PH++G+ A + T + S + + TA +
Sbjct: 217 TRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANK 258
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 46.3 bits (108), Expect = 9e-06
Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 193 YDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRV 252
Y V A + G G + +A A PG++IAVY
Sbjct: 45 YFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVELDIEVAGALA----PGAKIAVYFA 100
Query: 253 CSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITV 312
N + ++S+S GG P + + A G+TV
Sbjct: 101 P--NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTV 158
Query: 313 VCSAGNDGP 321
+ +AG+ G
Sbjct: 159 LAAAGDSGS 167
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 546 SGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDF 605
SGTSM+ PH++GV + Q + S I++A+ TA + + T +
Sbjct: 222 SGTSMATPHVAGVAGLLASQGRS--ASNIRAAIENTADKISG-------------TGTYW 266
Query: 606 GAGEVSTTASLQ 617
G V+ ++Q
Sbjct: 267 AKGRVNAYKAVQ 278
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 38.1 bits (87), Expect = 0.002
Identities = 47/205 (22%), Positives = 69/205 (33%), Gaps = 47/205 (22%)
Query: 138 SDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIED 197
S I I+DTGV K++G
Sbjct: 30 SGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGW------ 56
Query: 198 DVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEY 257
D V N +P++ GHGTH A AA G A P + I RV
Sbjct: 57 DFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTGIAGTA--------PKASILAVRVLDNSG 108
Query: 258 GCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAG 317
T + + A G V+SLSLGG+ + + +A G VV +AG
Sbjct: 109 SGTWTAVANGITYAADQGAKVISLSLGGTV------GNSGLQQAVNYAWNKGSVVVAAAG 162
Query: 318 NDGPSSGSVVNFAPWIFTVAASTID 342
N G ++ + + VA++ +
Sbjct: 163 NAGNTAPNYPAYYSNAIAVASTDQN 187
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 773 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.67 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.49 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.97 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 95.52 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 90.98 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=4.5e-53 Score=494.17 Aligned_cols=367 Identities=23% Similarity=0.257 Sum_probs=267.9
Q ss_pred CCCceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHH----HHH--HhCCCCeEEEecC
Q 004113 28 SKNGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEE----AHA--LSKKPGVVSIFPD 101 (773)
Q Consensus 28 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~----i~~--L~~~p~V~~V~~~ 101 (773)
..+++|||+|++.. . +++++++.+.++++.+.. ++.+.++++... .+. +..+|+|++|||+
T Consensus 29 ~~~~~~iV~~k~~~-~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~ 95 (671)
T d1r6va_ 29 YTEGKILVGYNDRS-E-----------VDKIVKAVNGKVVLELPQ-IKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPS 95 (671)
T ss_dssp BCTTEEEEEESSHH-H-----------HHHHHHHHTCEEEEEEGG-GTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECC
T ss_pred cCCCeEEEEECCcc-C-----------HHHHHHhcCCEEEEEecc-cceEEEEcCchhHHHHHHHHHHhcCCCceEECcc
Confidence 35789999999766 1 222333334567777776 677888876432 222 3358999999998
Q ss_pred ceeccccc----cCcc-----------------------ccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCC
Q 004113 102 PVLQLHTT----RSWD-----------------------FLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESE 154 (773)
Q Consensus 102 ~~~~~~~~----~~~~-----------------------~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp 154 (773)
...++... .... .|+++.. ...++|....+|+||+|||||||||++||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i-----~~~~a~~~~~tG~gV~VaViDtGvd~~Hp 170 (671)
T d1r6va_ 96 YKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI-----GVTQQLWEEASGTNIIVAVVDTGVDGTHP 170 (671)
T ss_dssp BCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT-----TCCHHHHHHCSCTTCEEEEEESCCBTTSG
T ss_pred eeEeeccccccCCCccccccccccccccccCcCccccccCcChhhc-----CccHHHHhcCCCCCCEEEEEcCCcCCCCh
Confidence 65543211 0000 1222211 11233444678999999999999999999
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccc
Q 004113 155 SFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLA 234 (773)
Q Consensus 155 ~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~ 234 (773)
+|.++- +..+++..+... ....++.|..+|||||||||||+. +
T Consensus 171 dl~~~~---------------------------~~~~~~~~~~~~-~~~~~~~d~~gHGT~VAGiiaa~~---------~ 213 (671)
T d1r6va_ 171 DLEGQV---------------------------IAGYRPAFDEEL-PAGTDSSYGGSAGTHVAGTIAAKK---------D 213 (671)
T ss_dssp GGTTTB---------------------------CCEEEGGGTEEE-CTTCBCCTTCSHHHHHHHHHHCCC---------S
T ss_pred hhcCCc---------------------------ccCccccccCCC-CCCCcCcccCCCCccccceeeeec---------c
Confidence 997531 111122111100 111345678899999999999975 2
Q ss_pred cceeeeccCCceEEEEEeecCC------CCCCHHHHHHHHHHHhhCCCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhC
Q 004113 235 AGTAIGGSPGSRIAVYRVCSPE------YGCTGSNILAAFDDAIADGVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEH 308 (773)
Q Consensus 235 ~~~~~GvAP~A~l~~~kv~~~~------g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~ 308 (773)
+..+.||||+|+|+++|++.+. +.....++++||+||+++|++|||||||+.. ....+..++..+.++
T Consensus 214 ~~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~------~~~~~~~ai~~a~~~ 287 (671)
T d1r6va_ 214 GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG------YSYTMKEAFDYAMEH 287 (671)
T ss_dssp SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC------CCHHHHHHHHHHHHT
T ss_pred ccceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc------CChHHHHHHHHHHhc
Confidence 3346899999999999999752 3466778999999999999999999999754 235677788999999
Q ss_pred CcEEEEecCCCCCCC-CCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccc
Q 004113 309 GITVVCSAGNDGPSS-GSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDAN 387 (773)
Q Consensus 309 Gi~vV~aAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 387 (773)
|+++|+||||++.+. ...+...|++|+|||++.+..
T Consensus 288 gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~------------------------------------------- 324 (671)
T d1r6va_ 288 GVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------------------------------- 324 (671)
T ss_dssp TCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-------------------------------------------
T ss_pred cCcEEEEEecCCCCccccCCccCCceEEEEEecCCCC-------------------------------------------
Confidence 999999999998654 445567799999998643210
Q ss_pred cccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHH
Q 004113 388 ENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILA 467 (773)
Q Consensus 388 ~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~ 467 (773)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCCCCCCCC------CCCCCCc
Q 004113 468 YINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGNDTGEAP------EGKEPPL 541 (773)
Q Consensus 468 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~~~~~~~------~~~~~~~ 541 (773)
...++.||+|||.. ||+|||++|+++++........ .....+.
T Consensus 325 -----------------------~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~ 373 (671)
T d1r6va_ 325 -----------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGT 373 (671)
T ss_dssp -----------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCC
T ss_pred -----------------------cceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCe
Confidence 12578999999975 9999999999998753321111 2223478
Q ss_pred ceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCCCce
Q 004113 542 FNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQPGL 620 (773)
Q Consensus 542 y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~~~l 620 (773)
|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+ .+..||||+||+.+|++..+
T Consensus 374 y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g-----------~~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-----------WDHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-----------CBTTTBTCBCCHHHHHHCCC
T ss_pred eeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC-----------CCCCcccChhCHHHHhhCcC
Confidence 999999999999999999999999999999999999999999887654 66899999999999998544
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=2.8e-49 Score=442.29 Aligned_cols=372 Identities=23% Similarity=0.250 Sum_probs=232.5
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|. .+|+||+|||||||||++||+|.++ ++..+++.... +...+.|
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~~----~~~~~~d 61 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGTG----NWYQPGN 61 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTSC----CTTCCCS
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCCC----CCCCCCC
Confidence 4554 4899999999999999999999742 22223332221 2245778
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccC--CceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEeccCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSP--GSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGG 285 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP--~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~SlG~ 285 (773)
+.||||||||||||+.. +..+.|||| +++|+.+|++.....+...++++||+++++ .+++|||+|||.
T Consensus 62 ~~gHGThvAgiiag~~~---------~~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~ 132 (435)
T d1v6ca_ 62 NNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGG 132 (435)
T ss_dssp SCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCB
T ss_pred CCCcHHHHHHHHhccCC---------CCceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCC
Confidence 99999999999999862 234689999 899999999988756677789999999986 699999999997
Q ss_pred CCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEE--eeeeec
Q 004113 286 SAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVI--KGESIN 363 (773)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~--~g~~~~ 363 (773)
... ...+..++.++.++|+++|+||||+|....+++...+++|+||+++.+.....+..++....+ .|..+.
T Consensus 133 ~~~------~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~ 206 (435)
T d1v6ca_ 133 SGS------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAIL 206 (435)
T ss_dssp SCC------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEE
T ss_pred CCC------CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeeccccee
Confidence 652 355667778899999999999999998888888889999999998776543322222221111 011000
Q ss_pred cCCCCCCCcee-eEEcCCCCcCc-c---ccccccCCC--------------------CCCcccccccceEEEEecCCCC-
Q 004113 364 FSNLQKSPVYP-LIYAKSAKKDD-A---NENAARNCD--------------------LDSLAGALVKGKIVLCDNDDDM- 417 (773)
Q Consensus 364 ~~~~~~~~~~~-~v~~~~~~~~~-~---~~~~~~~c~--------------------~~~~~~~~~~gki~l~~~~~~~- 417 (773)
.........+. ........... . .......|. ...+...++.+++.++.+....
T Consensus 207 st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (435)
T d1v6ca_ 207 STVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQG 286 (435)
T ss_dssp EECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSS
T ss_pred eeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCcc
Confidence 00000000000 00000000000 0 000000000 0111122333444444432211
Q ss_pred --CchhhhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccc
Q 004113 418 --GSVVDKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIA 495 (773)
Q Consensus 418 --~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 495 (773)
.....+.......++.+++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 308 (435)
T d1v6ca_ 287 SSYPEINSTKACKTAGAKGIIV---------------------------------------------------------- 308 (435)
T ss_dssp SSCTHHHHHHHHHHTTCSEEEE----------------------------------------------------------
T ss_pred ccceeeeeceeecccCCcceEE----------------------------------------------------------
Confidence 11222222222233333222
Q ss_pred cccCCCCCCCC--CCCccCceEeCCccEEeeecCC-----CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCC
Q 004113 496 YFSARGPSPLT--RNILKPDITAPGVNILAAWMGN-----DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPT 568 (773)
Q Consensus 496 ~fSs~Gp~~~~--d~~iKPDI~APG~~I~sa~~~~-----~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 568 (773)
.+++.+|.... ....||||.+||..|.++.... .............|..+||||||||||||++|||+|+||+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 388 (435)
T d1v6ca_ 309 YSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPE 388 (435)
T ss_dssp ECCSSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred eccCCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCC
Confidence 23333333211 2457999999998876542110 0000000011157999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCC
Q 004113 569 FSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 569 ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
|++++||++||+||+++... +++++||+|+||+.+|++
T Consensus 389 ~s~~~vk~~L~~TA~~~~~~-----------~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 389 CSASQVRAALNATADDLSVA-----------GRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp SCHHHHHHHHHHHSBCCSSS-----------SCBTTTBTCBCCHHHHHH
T ss_pred CCHHHHHHHHHhhCcccCCC-----------CCCCCcccceecHHHHHH
Confidence 99999999999999988654 377899999999999964
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=6e-48 Score=405.18 Aligned_cols=258 Identities=29% Similarity=0.366 Sum_probs=213.9
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|+++++|+||+|||||||||++||+|.+ +++..+++.+.. ..+.|
T Consensus 22 ~aw~~~~~G~gv~VaviDsGi~~~h~~l~~---------------------------~~~~~~~~~~~~------~~~~d 68 (280)
T d1dbia_ 22 YAWDVTKGSSGQEIAVIDTGVDYTHPDLDG---------------------------KVIKGYDFVDND------YDPMD 68 (280)
T ss_dssp HHTTTCCCCTTCEEEEEESCCCTTSTTTTT---------------------------TEEEEEETTTTB------SCCCC
T ss_pred HHHhccCCCCCeEEEEEccCcCCCChhhcC---------------------------CeeecccccCCC------Ccccc
Confidence 699999999999999999999999999974 344445554332 45678
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||+|+|...+ ...+.||||+|+|+.+|+++..+.+...++++||+|++++|++|||||||....
T Consensus 69 ~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~~ 140 (280)
T d1dbia_ 69 LNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCH 140 (280)
T ss_dssp SSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCCC
T ss_pred ccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeecccccccc
Confidence 899999999999987533 344689999999999999988877899999999999999999999999997652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
.+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 141 ------~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~--------------------------- 187 (280)
T d1dbia_ 141 ------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ--------------------------- 187 (280)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT---------------------------
T ss_pred ------chhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC---------------------------
Confidence 24455666888999999999999999776666777889999998532
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
.+.++.||++||.. |++|||.+|++....
T Consensus 188 ------------------------------------------~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~- 216 (280)
T d1dbia_ 188 ------------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG- 216 (280)
T ss_dssp ------------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT-
T ss_pred ------------------------------------------CCCcCCcCCCCCcc--------cccCCccceeccccC-
Confidence 24788999999865 999999999999987
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
..|..++|||||||+|||++|||++. .+++.+||++|++||+++.. ++..||+|
T Consensus 217 -----------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-------------~~~~~G~G 270 (280)
T d1dbia_ 217 -----------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-------------TGTYFKYG 270 (280)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-------------BTTTBSSE
T ss_pred -----------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-------------CCCcCCCC
Confidence 88999999999999999999999995 55899999999999998754 45689999
Q ss_pred cccccccCC
Q 004113 609 EVSTTASLQ 617 (773)
Q Consensus 609 ~id~~~A~~ 617 (773)
+||+.+||+
T Consensus 271 ~ln~~~Al~ 279 (280)
T d1dbia_ 271 RINSYNAVT 279 (280)
T ss_dssp ECCHHHHHT
T ss_pred eEcHHHHcC
Confidence 999999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=9.3e-48 Score=403.05 Aligned_cols=256 Identities=26% Similarity=0.421 Sum_probs=215.1
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+++|+||+|||||||||++||+|+. ...++|..+. ..+.|
T Consensus 15 ~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~-----------------------------~~~~~~~~~~------~~~~d 59 (274)
T d1r0re_ 15 KVQAQGFKGANVKVAVLDTGIQASHPDLNV-----------------------------VGGASFVAGE------AYNTD 59 (274)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECSTTC------CTTCC
T ss_pred HHHHcCCCCCCeEEEEECCCCCCCChhhcc-----------------------------cCCccccCCC------CCCCC
Confidence 589999999999999999999999999951 2233443322 45667
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||++... ...+.|+||+|+|+.+|+++..+....++++++++++.+++++|+|+|||....
T Consensus 60 ~~gHGT~vAgii~~~~~---------~~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~~ 130 (274)
T d1r0re_ 60 GNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASG 130 (274)
T ss_dssp SSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSSC
T ss_pred ccccccccccccccccc---------cccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceeccccccccc
Confidence 88999999999998752 334589999999999999988866788999999999999999999999997652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCC----CcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeecc
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSG----SVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 364 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~ 364 (773)
.........++.++++++|+||||+|.... ..+...+++|+|||.+.
T Consensus 131 ------~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~----------------------- 181 (274)
T d1r0re_ 131 ------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS----------------------- 181 (274)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT-----------------------
T ss_pred ------hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC-----------------------
Confidence 244555667889999999999999986532 23345578899987532
Q ss_pred CCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc
Q 004113 365 SNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA 444 (773)
Q Consensus 365 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 444 (773)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEee
Q 004113 445 VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAA 524 (773)
Q Consensus 445 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa 524 (773)
.+.++.||++||. |||+|||++|+++
T Consensus 182 ----------------------------------------------~~~~~~~s~~g~~--------~di~APG~~i~~~ 207 (274)
T d1r0re_ 182 ----------------------------------------------NSNRASFSSVGAE--------LEVMAPGAGVYST 207 (274)
T ss_dssp ----------------------------------------------TSCBCTTCCCSTT--------EEEEEECSSEEEE
T ss_pred ----------------------------------------------CCCcccccCCCCC--------EEEEecCCCcccc
Confidence 2367899999984 5999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYD 604 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 604 (773)
.+. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++..
T Consensus 208 ~~~------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~ 261 (274)
T d1r0re_ 208 YPT------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFY 261 (274)
T ss_dssp ETT------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHH
T ss_pred cCC------------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCc
Confidence 987 88999999999999999999999999999999999999999998764 4568
Q ss_pred CCcccccccccCC
Q 004113 605 FGAGEVSTTASLQ 617 (773)
Q Consensus 605 ~G~G~id~~~A~~ 617 (773)
||+|+||+.+|++
T Consensus 262 ~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 262 YGKGLINVEAAAQ 274 (274)
T ss_dssp HTTCBCCHHHHTC
T ss_pred eEcCeecHHHhcC
Confidence 9999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=4.3e-47 Score=399.04 Aligned_cols=258 Identities=28% Similarity=0.400 Sum_probs=222.1
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 128 SPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 128 ~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
+++|+.+ +|+||+|+|||||||++||+|.+ +++..++|.++. ..+.
T Consensus 21 ~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~---------------------------~~~~~~~~~~~~------~~~~ 66 (279)
T d1thma_ 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDND------STPQ 66 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTTB------SCCC
T ss_pred HHHHhcc-CCCCcEEEEEcCCCCCCChhhcC---------------------------CeeccccccccC------cccc
Confidence 3689887 89999999999999999999974 345555665443 5567
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCC
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSA 287 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 287 (773)
|..+|||||||+|++...+ ...+.||||+|+|+.+|++...+.+...+++++|+++.+.+++|+|+|||...
T Consensus 67 d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~ 138 (279)
T d1thma_ 67 NGNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV 138 (279)
T ss_dssp CSSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred cccccccccceeeeeccCC--------CccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCccc
Confidence 8899999999999998643 33468999999999999998887788999999999999999999999999765
Q ss_pred CCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCC
Q 004113 288 GIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNL 367 (773)
Q Consensus 288 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 367 (773)
.......+...+.++|+++|+|+||+|......+...|++|+|||++.
T Consensus 139 ------~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~-------------------------- 186 (279)
T d1thma_ 139 ------GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ-------------------------- 186 (279)
T ss_dssp ------CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT--------------------------
T ss_pred ------cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC--------------------------
Confidence 235566677888999999999999999887777778899999998532
Q ss_pred CCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccccc
Q 004113 368 QKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVAS 447 (773)
Q Consensus 368 ~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 447 (773)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecC
Q 004113 448 SYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMG 527 (773)
Q Consensus 448 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~ 527 (773)
.+.++.||++|++. ||+|||.+|+++.+.
T Consensus 187 -------------------------------------------~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~ 215 (279)
T d1thma_ 187 -------------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT 215 (279)
T ss_dssp -------------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT
T ss_pred -------------------------------------------CCCCccccCCCceE--------EEeeeeeccccccCc
Confidence 24688999999976 999999999999987
Q ss_pred CCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCc
Q 004113 528 NDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGA 607 (773)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~ 607 (773)
+.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.. .+..||+
T Consensus 216 ------------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g-------------~~~~~G~ 268 (279)
T d1thma_ 216 ------------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG-------------TGTYWAK 268 (279)
T ss_dssp ------------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT-------------BTTTBSS
T ss_pred ------------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC-------------CCCccee
Confidence 8899999999999999999999999665 789999999999998753 4568999
Q ss_pred ccccccccCC
Q 004113 608 GEVSTTASLQ 617 (773)
Q Consensus 608 G~id~~~A~~ 617 (773)
|+||+.+||+
T Consensus 269 G~vn~~~Av~ 278 (279)
T d1thma_ 269 GRVNAYKAVQ 278 (279)
T ss_dssp EECCHHHHHH
T ss_pred eeEcHHHhhC
Confidence 9999999985
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=4.6e-47 Score=396.48 Aligned_cols=255 Identities=29% Similarity=0.413 Sum_probs=218.1
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|..+++|+||+||||||||+ +||+|... ..++|.... ..+.|
T Consensus 15 ~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-----------------------------~~~~~~~~~------~~~~d 58 (269)
T d1gcia_ 15 AAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-----------------------------GGASFVPGE------PSTQD 58 (269)
T ss_dssp HHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-----------------------------EEEECSTTC------CSCSC
T ss_pred HHHhCCCCCCCeEEEEECCCCC-CCcccCcc-----------------------------ccccccCCC------CCccc
Confidence 6999999999999999999998 89999521 222333321 45667
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||++.. ......|+||+|+|+.+|++...+......+.++++++..+++++||+|||....
T Consensus 59 ~~~HGT~vAgii~~~~---------~~~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~~ 129 (269)
T d1gcia_ 59 GNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP 129 (269)
T ss_dssp SSSHHHHHHHHHHCCC---------SSSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSC
T ss_pred cchhhheecccccccC---------CCccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhccccccccccccccc
Confidence 8899999999999875 2344589999999999999988877888899999999999999999999997652
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCcEEEEcccccCcceeeEEEECCceEEeeeeeccCCCC
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINFSNLQ 368 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~ 368 (773)
......+...+.++|+++|+||||+|......+...|++|+||+++.+
T Consensus 130 ------~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 177 (269)
T d1gcia_ 130 ------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-------------------------- 177 (269)
T ss_dssp ------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------------------------
T ss_pred ------cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC--------------------------
Confidence 244556678889999999999999998777777778999999985321
Q ss_pred CCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcccccc
Q 004113 369 KSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAVASS 448 (773)
Q Consensus 369 ~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 448 (773)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEeeecCC
Q 004113 449 YGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAAWMGN 528 (773)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa~~~~ 528 (773)
+.++.||++||.. ||+|||.++.++.+.
T Consensus 178 -------------------------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~~- 205 (269)
T d1gcia_ 178 -------------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPG- 205 (269)
T ss_dssp -------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCcccccCCCCCc--------eEEEeeecceeccCC-
Confidence 3678999999965 999999999999987
Q ss_pred CCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCCcc
Q 004113 529 DTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYDFGAG 608 (773)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 608 (773)
..|..++|||||||+|||++|||+|++|+|++++||++|++||.++. ++..||+|
T Consensus 206 -----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------------~~~~~G~G 260 (269)
T d1gcia_ 206 -----------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSG 260 (269)
T ss_dssp -----------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTC
T ss_pred -----------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccC
Confidence 88999999999999999999999999999999999999999999874 34579999
Q ss_pred cccccccCC
Q 004113 609 EVSTTASLQ 617 (773)
Q Consensus 609 ~id~~~A~~ 617 (773)
+||+.+|++
T Consensus 261 ~ln~~~Avk 269 (269)
T d1gcia_ 261 LVNAEAATR 269 (269)
T ss_dssp BCCHHHHTC
T ss_pred eEcHHHhcC
Confidence 999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.9e-47 Score=400.67 Aligned_cols=257 Identities=27% Similarity=0.419 Sum_probs=214.6
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCC
Q 004113 129 PSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRD 208 (773)
Q Consensus 129 ~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d 208 (773)
.+|.++++|+||+|||||||||++||+|+.. ..+++.... .....+
T Consensus 15 ~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-----------------------------~~~~~~~~~-----~~~~~~ 60 (281)
T d1to2e_ 15 ALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPSE-----TNPFQD 60 (281)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTTC-----CCTTCC
T ss_pred HHHHCCCCCCCeEEEEECCCCCCCChhhhhc-----------------------------CCccccCCC-----CCCCcC
Confidence 6999999999999999999999999999631 122222211 122334
Q ss_pred CCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCCCC
Q 004113 209 MVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGSAG 288 (773)
Q Consensus 209 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~ 288 (773)
..+|||||||||+|.. .+....||||+|+|+.+|++..++.....+++++|+|+++.+++|+|+|||...
T Consensus 61 ~~~HGT~vAgiiag~~---------~~~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~~- 130 (281)
T d1to2e_ 61 NNSHGTHVAGTVAALN---------NSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS- 130 (281)
T ss_dssp SSSHHHHHHHHHHCCS---------SSSSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC-
T ss_pred cCCCCceeecccccCC---------CCCCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCCc-
Confidence 6799999999999874 223358999999999999998876678889999999999999999999999754
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC----cccCCCcEEEEcccccCcceeeEEEECCceEEeeeeecc
Q 004113 289 IVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS----VVNFAPWIFTVAASTIDRDFESDIVLGGNKVIKGESINF 364 (773)
Q Consensus 289 ~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~ 364 (773)
....+..+++++.++|+++|+||||++..... .+...+++|+||+.+.
T Consensus 131 -----~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~----------------------- 182 (281)
T d1to2e_ 131 -----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS----------------------- 182 (281)
T ss_dssp -----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-----------------------
T ss_pred -----chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC-----------------------
Confidence 33667777888999999999999999865322 3345678889888532
Q ss_pred CCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCcc
Q 004113 365 SNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRA 444 (773)
Q Consensus 365 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 444 (773)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEee
Q 004113 445 VASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILAA 524 (773)
Q Consensus 445 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~sa 524 (773)
.+.++.||++||.. |++|||.+|.++
T Consensus 183 ----------------------------------------------~~~~~~~S~~G~~~--------d~~apG~~i~s~ 208 (281)
T d1to2e_ 183 ----------------------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQST 208 (281)
T ss_dssp ----------------------------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEE
T ss_pred ----------------------------------------------CCCCCcccCCCCCc--------cccCCCCCceee
Confidence 24678999999976 999999999999
Q ss_pred ecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 004113 525 WMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAAATPYD 604 (773)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~ 604 (773)
.+. +.|..++|||||||+|||++|||+|++|.|++++||++|++||+++. ++..
T Consensus 209 ~~~------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~ 262 (281)
T d1to2e_ 209 LPG------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFY 262 (281)
T ss_dssp ETT------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHH
T ss_pred cCC------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCC
Confidence 987 88999999999999999999999999999999999999999999864 3457
Q ss_pred CCcccccccccCC
Q 004113 605 FGAGEVSTTASLQ 617 (773)
Q Consensus 605 ~G~G~id~~~A~~ 617 (773)
||+|+||+.+|++
T Consensus 263 ~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 263 YGKGLINVQAAAQ 275 (281)
T ss_dssp HTTCBCCHHHHTS
T ss_pred cccCcccHHHHHh
Confidence 9999999999999
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=8.7e-43 Score=371.51 Aligned_cols=288 Identities=27% Similarity=0.343 Sum_probs=218.0
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
.+.+|..+++|+||+|||||||||++||+|.++ +...++|...... .....
T Consensus 15 ~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~~--~~~~~ 65 (309)
T d2ixta1 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATTP--INNSC 65 (309)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSSC--EETCC
T ss_pred ChhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCCC--CCCCc
Confidence 347999999999999999999999999999742 3333444332210 11345
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhC-----CCcEEEe
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIAD-----GVDVLSL 281 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~-----g~dVIN~ 281 (773)
.|..+|||||||||+|...+ +...+.||||+|+|+.++++...+.+...+++.+++++++. ...|+|+
T Consensus 66 ~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~ 138 (309)
T d2ixta1 66 TDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISM 138 (309)
T ss_dssp CCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccc
Confidence 67889999999999987543 23446899999999999999888778889999999998864 4578999
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCccc--CCCcEEEEcccccCcceeeEEEECCceEEee
Q 004113 282 SLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKG 359 (773)
Q Consensus 282 SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~--~~p~vitVga~~~~~~~~~~~~~g~~~~~~g 359 (773)
||+... .......++..+.++|+++|+||||++........ ..+++++|++.........
T Consensus 139 s~~~~~------~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~------------ 200 (309)
T d2ixta1 139 SLGSSA------NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGT------------ 200 (309)
T ss_dssp CCCBSS------CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTE------------
T ss_pred cccccc------cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccc------------
Confidence 998754 23555666788889999999999999876554433 4577888876532210000
Q ss_pred eeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEe
Q 004113 360 ESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVID 439 (773)
Q Consensus 360 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~ 439 (773)
..
T Consensus 201 ------------------------------------------------~~------------------------------ 202 (309)
T d2ixta1 201 ------------------------------------------------YR------------------------------ 202 (309)
T ss_dssp ------------------------------------------------EE------------------------------
T ss_pred ------------------------------------------------cc------------------------------
Confidence 00
Q ss_pred CCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCc
Q 004113 440 DQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGV 519 (773)
Q Consensus 440 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~ 519 (773)
.........++++|+.. ....||||+|||.
T Consensus 203 ------------------------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~ 232 (309)
T d2ixta1 203 ------------------------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGS 232 (309)
T ss_dssp ------------------------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECS
T ss_pred ------------------------------------------------ccccccccccccccccc--cCCCcceeecCCC
Confidence 00012344566777765 3668999999999
Q ss_pred cEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCC
Q 004113 520 NILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRAPITTNSGAA 599 (773)
Q Consensus 520 ~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~~ 599 (773)
+|+++... ..|..++|||||||+|||++|||+|++|+|++++||++|++||++++..+. .....
T Consensus 233 ~~~s~~~~------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~----~g~~~ 296 (309)
T d2ixta1 233 SVYSTWYN------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG----YGAAI 296 (309)
T ss_dssp SEEEECTT------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS----TTCCS
T ss_pred ceeeecCC------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC----cCCcc
Confidence 99999887 889999999999999999999999999999999999999999998865532 11234
Q ss_pred CCCCCCCcccccc
Q 004113 600 ATPYDFGAGEVST 612 (773)
Q Consensus 600 ~~~~~~G~G~id~ 612 (773)
.+++.+|+|++|+
T Consensus 297 ~~~~~~g~G~~~v 309 (309)
T d2ixta1 297 GDDYASGFGFARV 309 (309)
T ss_dssp SSBTTTBTCBCCC
T ss_pred CCCcccCCCEecC
Confidence 4678899999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=9.4e-43 Score=365.64 Aligned_cols=257 Identities=26% Similarity=0.327 Sum_probs=204.4
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeec
Q 004113 114 FLKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFY 193 (773)
Q Consensus 114 ~~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~ 193 (773)
.|||.+..+........|....+|+||+|||||||||++||+|.++ +.....+
T Consensus 7 ~wgl~~i~~~~~~~~~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~~~~ 59 (279)
T d2pwaa1 7 PWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTY 59 (279)
T ss_dssp CHHHHHHTCSSTTCCCEECCTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEES
T ss_pred CCchhhhCCCCcCCCcceecCCCCCCeEEEEECcCCCCCChhhcCC---------------------------ceeccCC
Confidence 4566655444444444544667999999999999999999999742 1111111
Q ss_pred cccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh
Q 004113 194 DIEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA 273 (773)
Q Consensus 194 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~ 273 (773)
. ..+.|..+|||||||||+|.. .|+||+|+|+.+|++........+.+..+++++..
T Consensus 60 ~---------~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 116 (279)
T d2pwaa1 60 Y---------YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVAS 116 (279)
T ss_dssp S---------SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHH
T ss_pred C---------CCcccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheecc
Confidence 1 345678899999999999874 68999999999999988767788899999999876
Q ss_pred C-------CCcEEEeccCCCCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cccCCCcEEEEcccccCcce
Q 004113 274 D-------GVDVLSLSLGGSAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS-VVNFAPWIFTVAASTIDRDF 345 (773)
Q Consensus 274 ~-------g~dVIN~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~-~~~~~p~vitVga~~~~~~~ 345 (773)
. +++|+|+|||... .+.+..++.++.++|+++|+||||++..... .+...|++|+|||++.
T Consensus 117 ~~~~~~~~~~~i~n~s~g~~~-------~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~---- 185 (279)
T d2pwaa1 117 DKNNRNCPKGVVASLSLGGGY-------SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---- 185 (279)
T ss_dssp HGGGSCCTTEEEEEECCCEEC-------CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----
T ss_pred cccccccccccceeccCCCcc-------ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee----
Confidence 3 4569999999754 2566777788899999999999999865433 3445688899988532
Q ss_pred eeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhc
Q 004113 346 ESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKD 425 (773)
Q Consensus 346 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~ 425 (773)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCC
Q 004113 426 GVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPL 505 (773)
Q Consensus 426 ~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 505 (773)
.+.++.||++||..
T Consensus 186 -----------------------------------------------------------------~g~~~~~S~~G~~~- 199 (279)
T d2pwaa1 186 -----------------------------------------------------------------YDRRSSFSNYGSVL- 199 (279)
T ss_dssp -----------------------------------------------------------------TSBBCTTCCBSTTC-
T ss_pred -----------------------------------------------------------------cCCCccccCCCCcc-
Confidence 24788999999965
Q ss_pred CCCCccCceEeCCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 004113 506 TRNILKPDITAPGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQT 585 (773)
Q Consensus 506 ~d~~iKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~ 585 (773)
||+|||.+|+++++. +.|..++|||||||+|||++|||+|++|.++++++|. |++||++.
T Consensus 200 -------dv~APG~~i~s~~~~------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~ 259 (279)
T d2pwaa1 200 -------DIFGPGTDILSTWIG------------GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG 259 (279)
T ss_dssp -------CEEEECSSEEEEETT------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES
T ss_pred -------ccccccccccccccC------------CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC
Confidence 999999999999987 8899999999999999999999999999999887775 77888764
Q ss_pred CCCCCccccCCCCCCCCCCCCcccccc
Q 004113 586 NNLRAPITTNSGAAATPYDFGAGEVST 612 (773)
Q Consensus 586 ~~~g~~~~~~~~~~~~~~~~G~G~id~ 612 (773)
....+|+|++|+
T Consensus 260 ---------------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 260 ---------------DLSNIPFGTVNL 271 (279)
T ss_dssp ---------------CCBSCCTTSCCE
T ss_pred ---------------CCCCCCCCChhh
Confidence 335689999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1.7e-40 Score=355.07 Aligned_cols=296 Identities=24% Similarity=0.290 Sum_probs=221.4
Q ss_pred CCCCC-CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCC
Q 004113 129 PSLNS-QDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPR 207 (773)
Q Consensus 129 ~~~~~-~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~ 207 (773)
.+|.. |+||+||+|||||||||++||+|.... + .+.++...+.+... ....
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~----------------~-----~~~~~~~~~~~~~~-------~~~~ 63 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE----------------A-----FRGKITALYALGRT-------NNAN 63 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT----------------T-----TTTCEEEEEETTTT-------TCCC
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc----------------c-----cCCcEEeecCCCCC-------CCCC
Confidence 36664 999999999999999999999997431 1 12344444444322 4567
Q ss_pred CCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCC--CCHHHHHHHHHHHhhCCCcEEEeccCC
Q 004113 208 DMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYG--CTGSNILAAFDDAIADGVDVLSLSLGG 285 (773)
Q Consensus 208 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~--~~~~~i~~ai~~a~~~g~dVIN~SlG~ 285 (773)
|..||||||||||+|+... ..||||+|+|+.+|++...+. .....+..+++++...+++|+|+|||.
T Consensus 64 d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~ 132 (318)
T d1wmda2 64 DTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGA 132 (318)
T ss_dssp CSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCB
T ss_pred CCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeeccccc
Confidence 8899999999999987422 379999999999999987632 344567889999999999999999998
Q ss_pred CCCCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCCccc--CCCcEEEEcccccCcceeeEEEECCceEEeeeeec
Q 004113 286 SAGIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGSVVN--FAPWIFTVAASTIDRDFESDIVLGGNKVIKGESIN 363 (773)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~--~~p~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 363 (773)
.. ..........+...+.++++++|++|||.|........ ..++++++.+........
T Consensus 133 ~~---~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------- 192 (318)
T d1wmda2 133 AV---NGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----------------- 192 (318)
T ss_dssp CC---TTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----------------
T ss_pred cc---ccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-----------------
Confidence 76 34445566666677789999999999999977655443 346666666543211000
Q ss_pred cCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCc
Q 004113 364 FSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSR 443 (773)
Q Consensus 364 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 443 (773)
.
T Consensus 193 ------------------------------~------------------------------------------------- 193 (318)
T d1wmda2 193 ------------------------------G------------------------------------------------- 193 (318)
T ss_dssp ------------------------------C-------------------------------------------------
T ss_pred ------------------------------c-------------------------------------------------
Confidence 0
Q ss_pred cccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEeCCccEEe
Q 004113 444 AVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITAPGVNILA 523 (773)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~APG~~I~s 523 (773)
........+..+|++||.. +...|||++|||.+|++
T Consensus 194 ------------------------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~ 229 (318)
T d1wmda2 194 ------------------------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILS 229 (318)
T ss_dssp ------------------------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEE
T ss_pred ------------------------------------------cccccccccccccccCCCc--CCCcccceeecCceEEe
Confidence 0001123677899999987 47799999999999999
Q ss_pred eecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhC-----CCCCHHHHHHHHHhcccccCCCCCccccCCCC
Q 004113 524 AWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQN-----PTFSPSEIKSAVMTTATQTNNLRAPITTNSGA 598 (773)
Q Consensus 524 a~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p~ls~~~Ik~~L~~TA~~~~~~g~~~~~~~~~ 598 (773)
+.................|..++|||||||+|||++|||+|++ +.+++.+||++|++||+++...+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~~~--------- 300 (318)
T d1wmda2 230 ARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGY--------- 300 (318)
T ss_dssp ECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCS---------
T ss_pred ccccccccCccccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCCCC---------
Confidence 8876433222212223567889999999999999999999975 46789999999999999876542
Q ss_pred CCCCCCCCcccccccccCC
Q 004113 599 AATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 599 ~~~~~~~G~G~id~~~A~~ 617 (773)
++..||||+||+.+||+
T Consensus 301 --~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 301 --PNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp --SCTTTTTCBCCHHHHHT
T ss_pred --CCCCeeeceecHHHHhC
Confidence 67789999999999987
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.3e-39 Score=348.70 Aligned_cols=297 Identities=16% Similarity=0.152 Sum_probs=199.6
Q ss_pred cCcccccccCCCCCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeecc
Q 004113 115 LKIQTDVLIDSVPSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYD 194 (773)
Q Consensus 115 ~gl~~~~~~~~~~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~ 194 (773)
|.++......+....+|..+.+|+||+|||||||||++||+|.++.. .+..| .+.
T Consensus 14 w~l~~~~~~~in~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~------------~~~~~-------------~~~ 68 (334)
T d1p8ja2 14 WYLSGVTQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------PGASF-------------DVN 68 (334)
T ss_dssp TTTSCTTSCSCCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------GGGCE-------------ETT
T ss_pred CCCCCCcccCCCHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhccc------------cCCCc-------------ccc
Confidence 44444333334445799999999999999999999999999975310 00011 011
Q ss_pred ccccccCCCCCCCCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-
Q 004113 195 IEDDVVANGQSPRDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA- 273 (773)
Q Consensus 195 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~- 273 (773)
+............|..+|||||||||++...++. ...|+||+++++.+|+... ...+.+.++.++++
T Consensus 69 ~~~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~----~~~~~~~~~~~~~~~ 136 (334)
T d1p8ja2 69 DQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG----EVTDAVEARSLGLNP 136 (334)
T ss_dssp TTBSCCCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS----CCCHHHHHHHHTSCT
T ss_pred CCCCccccccccccCccchhhhhhhhhhcccccc--------ccccccccccccchhhccc----cccchHHHHHHHhhh
Confidence 1000001223455789999999999999864432 2479999999999998753 33466677777775
Q ss_pred CCCcEEEeccCCCCCCCCCCCC--------cHHHHHHHHHHhCCcEEEEecCCCCCCCCCccc----CCCcEEEEccccc
Q 004113 274 DGVDVLSLSLGGSAGIVRPLTD--------DPIALGAFHAVEHGITVVCSAGNDGPSSGSVVN----FAPWIFTVAASTI 341 (773)
Q Consensus 274 ~g~dVIN~SlG~~~~~~~~~~~--------~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~----~~p~vitVga~~~ 341 (773)
++++++|+|||.... ..... .....+...+..+|+++|+||||++........ ..+.+++|++...
T Consensus 137 ~~~~~~n~S~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (334)
T d1p8ja2 137 NHIHIYSASWGPEDD--GKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ 214 (334)
T ss_dssp TTCCEEEECCBSCCS--SSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT
T ss_pred cCCcEEeCCCCCCCc--CcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc
Confidence 689999999997642 11111 112223445567999999999998754432221 1234444444322
Q ss_pred CcceeeEEEECCceEEeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchh
Q 004113 342 DRDFESDIVLGGNKVIKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVV 421 (773)
Q Consensus 342 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~ 421 (773)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccccCCceEEEEEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCC
Q 004113 422 DKKDGVKSLGGVGVIVIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARG 501 (773)
Q Consensus 422 ~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 501 (773)
.+..+.||++|
T Consensus 215 ---------------------------------------------------------------------~g~~~~~s~~~ 225 (334)
T d1p8ja2 215 ---------------------------------------------------------------------FGNVPWYSEAC 225 (334)
T ss_dssp ---------------------------------------------------------------------TSCCCTTCCBC
T ss_pred ---------------------------------------------------------------------CCceeeecccC
Confidence 23455566666
Q ss_pred CCCCCCCCccCceEeCCc-----cEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 004113 502 PSPLTRNILKPDITAPGV-----NILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKS 576 (773)
Q Consensus 502 p~~~~d~~iKPDI~APG~-----~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~ 576 (773)
+... .+..+||. .+.+.... ..|..++|||||||+|||++|||+|++|+|++.|||+
T Consensus 226 ~~~~------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~ 287 (334)
T d1p8ja2 226 SSTL------ATTYSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQH 287 (334)
T ss_dssp TTCC------EEEECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred Cccc------cccccccccccccccccccCC------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHH
Confidence 5441 13344442 23333332 6788999999999999999999999999999999999
Q ss_pred HHHhcccccCCCCCccccCCCCCCCCCCCCcccccccccCC
Q 004113 577 AVMTTATQTNNLRAPITTNSGAAATPYDFGAGEVSTTASLQ 617 (773)
Q Consensus 577 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~id~~~A~~ 617 (773)
+|++||.+.......+.........+..||+|+||+.+||+
T Consensus 288 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 288 LVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp HHHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHH
T ss_pred HHHHhCcccCCCCccccccCCCcccCCCCcceEeCHHHHHH
Confidence 99999998876654444433344456789999999999997
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.3e-38 Score=338.19 Aligned_cols=289 Identities=16% Similarity=0.118 Sum_probs=203.1
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCC
Q 004113 127 PSPSLNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSP 206 (773)
Q Consensus 127 ~~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~ 206 (773)
...+|..+++|+||+|||||||||++||+|.++-. . ...++|.+.. ......
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------~------------------~~~~~~~~~~---~~~~~~ 86 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------A------------------EGSWDFNDNT---NLPKPR 86 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------G------------------GGCEETTTTB---SCCCCC
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------c------------------ccccccccCC---CccCCC
Confidence 34789999999999999999999999999985310 0 0112222221 011334
Q ss_pred CCCCCCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhhCCCcEEEeccCCC
Q 004113 207 RDMVGHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIADGVDVLSLSLGGS 286 (773)
Q Consensus 207 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 286 (773)
.+..+|||||||+|+|....+ ..+.||||+|+|+.+++... .....++..++.++++. .+|+|+|||..
T Consensus 87 ~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~v~~~s~g~~ 155 (339)
T d2id4a2 87 LSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDV-NDIYSCSWGPA 155 (339)
T ss_dssp STTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTT-CSEEEECEESC
T ss_pred cccccccceeeeccccccccc--------ccccccccccccceEEEeec--cccchHHHHHHHHHHhh-CCEEeccCCCC
Confidence 567899999999999875432 33589999999999999763 46777888888887766 49999999975
Q ss_pred CCCCC-CCCCcH----H-HHHHHHHHhCCcEEEEecCCCCCCCCCccc----CCCcEEEEcccccCcceeeEEEECCceE
Q 004113 287 AGIVR-PLTDDP----I-ALGAFHAVEHGITVVCSAGNDGPSSGSVVN----FAPWIFTVAASTIDRDFESDIVLGGNKV 356 (773)
Q Consensus 287 ~~~~~-~~~~~~----~-~~~~~~a~~~Gi~vV~aAGN~g~~~~~~~~----~~p~vitVga~~~~~~~~~~~~~g~~~~ 356 (773)
..... ...... + ..+...+..+|+++|+||||++........ ..+.+++|++++
T Consensus 156 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 219 (339)
T d2id4a2 156 DDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID---------------- 219 (339)
T ss_dssp CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC----------------
T ss_pred CCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc----------------
Confidence 42101 111111 1 223445567999999999998754322211 123333333321
Q ss_pred EeeeeeccCCCCCCCceeeEEcCCCCcCccccccccCCCCCCcccccccceEEEEecCCCCCchhhhhcccccCCceEEE
Q 004113 357 IKGESINFSNLQKSPVYPLIYAKSAKKDDANENAARNCDLDSLAGALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVI 436 (773)
Q Consensus 357 ~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i 436 (773)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccccccCccccEEEecHHHHHHHHHHHhcCCCceEEEeeCeeeecccCCCccccccCCCCCCCCCCCccCceEe
Q 004113 437 VIDDQSRAVASSYGTFPLTVISSKEAAEILAYINSKRNPVATILPTVSVTKYKPAPAIAYFSARGPSPLTRNILKPDITA 516 (773)
Q Consensus 437 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~d~~iKPDI~A 516 (773)
..+..+.||++|+.. ...++..+
T Consensus 220 -----------------------------------------------------~~g~~~~~s~~~~~~----~~~~~~~~ 242 (339)
T d2id4a2 220 -----------------------------------------------------HKDLHPPYSEGCSAV----MAVTYSSG 242 (339)
T ss_dssp -----------------------------------------------------TTSCCCTTCCCCTTE----EEEEECSB
T ss_pred -----------------------------------------------------ccccccccccccCcc----ceeeeeec
Confidence 124566777777653 34567888
Q ss_pred CCccEEeeecCCCCCCCCCCCCCCcceeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCC-ccccC
Q 004113 517 PGVNILAAWMGNDTGEAPEGKEPPLFNVISGTSMSCPHISGVVAAIKHQNPTFSPSEIKSAVMTTATQTNNLRA-PITTN 595 (773)
Q Consensus 517 PG~~I~sa~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls~~~Ik~~L~~TA~~~~~~g~-~~~~~ 595 (773)
||..+.+..... ..|..++|||||||||||++|||+|++|+|++.+||.+|+.||.+++.... .+.+.
T Consensus 243 ~g~~~~s~~~~~-----------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~ 311 (339)
T d2id4a2 243 SGEYIHSSDING-----------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDS 311 (339)
T ss_dssp TTBCEEEECSTT-----------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEEC
T ss_pred cccccceeccCC-----------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcccccc
Confidence 999998876541 568899999999999999999999999999999999999999998865432 11222
Q ss_pred CCCCCCCCCCCcccccccccCCC
Q 004113 596 SGAAATPYDFGAGEVSTTASLQP 618 (773)
Q Consensus 596 ~~~~~~~~~~G~G~id~~~A~~~ 618 (773)
......+..||||+||+.+||+.
T Consensus 312 ~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 312 AMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp SSSSEEBTTTBTCBCCHHHHHHH
T ss_pred CCCCCcCCCccchhhCHHHHHHH
Confidence 22344567799999999999984
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=3.5e-31 Score=286.71 Aligned_cols=168 Identities=19% Similarity=0.296 Sum_probs=107.8
Q ss_pred CCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCC
Q 004113 131 LNSQDQESDTIIGILDTGVWPESESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMV 210 (773)
Q Consensus 131 ~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~ 210 (773)
|..+++|+||+|||||+|||++||+|.+. |+.. +..+ ....+.+..
T Consensus 17 ~~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~---~~~~-----------------------~~~~~~~~~ 62 (357)
T d1t1ga_ 17 FPEGLDGQGQCIAIIALGGGYDETSLAQY--------FASL---GVSA-----------------------PQVVSVSVD 62 (357)
T ss_dssp CCTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT---TCCC-----------------------CCEEEEEST
T ss_pred CCCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc---CCCC-----------------------CCCceeCCC
Confidence 34689999999999999999999999731 1100 0000 001223456
Q ss_pred CCchhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHh---hCCCcEEEeccCCCC
Q 004113 211 GHGTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAI---ADGVDVLSLSLGGSA 287 (773)
Q Consensus 211 gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~---~~g~dVIN~SlG~~~ 287 (773)
+|+|||++++++..... ..+...+.||||+|+|+.+|+.... ..++.++++++ +.+++|||+|||...
T Consensus 63 g~~~~~~g~~~~~~~~~----~~d~~~~~GvAp~A~i~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~Vin~S~G~~~ 133 (357)
T d1t1ga_ 63 GATNQPTGDPNGPDGEV----ELDIEVAGALAPGAKIAVYFAPNTD-----AGFLNAITTAVHDPTHKPSIVSISWGGPE 133 (357)
T ss_dssp TCCCCCCSCTTSTHHHH----HHHHHHHHHHSTTSEEEEEECCSSH-----HHHHHHHHHHHHCTTTCCSEEEECCCEEG
T ss_pred CCCCCCCCccccccccc----cCCcccceeecccCeEEEEecccCC-----CchHHHHHHHHHhhhcCCeEEecccccCc
Confidence 77777777766542110 0122346899999999999996543 34455555554 568999999999864
Q ss_pred CCCCCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------cccCCCcEEEEccccc
Q 004113 288 GIVRPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS--------VVNFAPWIFTVAASTI 341 (773)
Q Consensus 288 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~--------~~~~~p~vitVga~~~ 341 (773)
..........+......+..+|+++|+++||+|..... .....+++++|++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 195 (357)
T d1t1ga_ 134 DSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 195 (357)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred CccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecc
Confidence 21011122345556667778999999999999854322 2224578888887543
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=1.5e-28 Score=267.46 Aligned_cols=169 Identities=16% Similarity=0.185 Sum_probs=117.8
Q ss_pred CCCCCCcEEEEEccCCCCC-CCCCCCCCCCCCCCcccccccCCCCCCcccCCceeEeeeeccccccccCCCCCCCCCCCC
Q 004113 134 QDQESDTIIGILDTGVWPE-SESFNDKDMGPIPTRWKGTCNAGNDNVSFSCNRKIIGARFYDIEDDVVANGQSPRDMVGH 212 (773)
Q Consensus 134 ~~~G~Gv~VaVIDtGid~~-Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~n~ki~~~~~~~~~~~~~~~~~~~~d~~gH 212 (773)
..+|+||+|||||+|.++. |+||.. +... .+.. .++.. ......+..+|
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~---------f~~~--~~~~----~~~~~---------------~~~~~~~~~~~ 70 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQ---------FTSA--NGLA----SVNTQ---------------TIQTGSSNGDY 70 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHH---------HHHH--TTCC----CCCEE---------------EEECSCTTSCC
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHH---------HHHh--cCCC----CCCCC---------------eecCCCCCCCC
Confidence 4589999999999998764 666641 0000 0000 00000 00223356789
Q ss_pred chhhHHhhccCCcCCCcccccccceeeeccCCceEEEEEeecCCCCCCHHHHHHHHHHHhh-CCCcEEEeccCCCCCC-C
Q 004113 213 GTHVASTAAGQAVQGASYYGLAAGTAIGGSPGSRIAVYRVCSPEYGCTGSNILAAFDDAIA-DGVDVLSLSLGGSAGI-V 290 (773)
Q Consensus 213 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~-~g~dVIN~SlG~~~~~-~ 290 (773)
|||+++++.+.. +...+.||||+|+|+.++++.+.+.....+++++|++|++ ++++|||+|||..... .
T Consensus 71 ~~~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~ 141 (369)
T d1ga6a_ 71 SDDQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADAN 141 (369)
T ss_dssp CBCHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHH
T ss_pred CCCCCcceeecc---------ccccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCC
Confidence 999999988653 2344689999999999999998867888899999999986 5799999999975310 0
Q ss_pred CCCCCcHHHHHHHHHHhCCcEEEEecCCCCCCCCC-------------cccCCCcEEEEccccc
Q 004113 291 RPLTDDPIALGAFHAVEHGITVVCSAGNDGPSSGS-------------VVNFAPWIFTVAASTI 341 (773)
Q Consensus 291 ~~~~~~~~~~~~~~a~~~Gi~vV~aAGN~g~~~~~-------------~~~~~p~vitVga~~~ 341 (773)
.....+.+..++.++..+|++||+||||+|..... .+...+++++|+++..
T Consensus 142 ~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 142 ADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp HTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 12234566677788889999999999999854321 2234589999998643
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.67 E-value=2.3e-08 Score=78.86 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=55.2
Q ss_pred CceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEecceeeEEEEEcCHHHHHHHhCCCCeEEEecCceecc
Q 004113 30 NGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYKHGFSGFAARLSAEEAHALSKKPGVVSIFPDPVLQL 106 (773)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ng~s~~l~~~~i~~L~~~p~V~~V~~~~~~~~ 106 (773)
+++|||.|+++. . ......+. +.....+.++.+.|+. ||||+++|++++++.|+++|+|.+||+|+.++.
T Consensus 1 e~~YIV~fK~~~-~-~~~~~~~~----~~v~~~gg~v~~~~~~-i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 1 EKKYIVGFKQTM-S-AMSSAKKK----DVISQKGGKVEKQFKY-VNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp CEEEEEEECSSS-S-CCSHHHHH----HHHHTTTCEEEEECSS-SSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CCcEEEEECCCC-C-hHHHHHHH----HHHHHcCCeEEEEEee-cceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 368999999987 4 22222232 3334456789999985 999999999999999999999999999987653
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.49 E-value=1.1e-07 Score=75.16 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=49.2
Q ss_pred CceEEEEeccCCCCCCCchhHHHHHHHHHhcccCccEEEEec-ceeeEEEEEcCHHHHHHHhCCCC--eEEEecCc
Q 004113 30 NGVYIVYMGAAASGKGSLRDDHAQLLASMLKWKKNSIIRSYK-HGFSGFAARLSAEEAHALSKKPG--VVSIFPDP 102 (773)
Q Consensus 30 ~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~ng~s~~l~~~~i~~L~~~p~--V~~V~~~~ 102 (773)
.++|||.|+++. . .....+.+.. +......+.+.|. ..|+||+++++++.++.|+++|+ |.+||+|.
T Consensus 2 aG~YIVvlK~~~-~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 2 AGKFIVIFKNDV-S----EDKIRETKDE-VIAEGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CEEEEEEECTTC-C----HHHHHHHHHH-HHHHTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CccEEEEECCCC-C----HHHHHHHHHH-HHhcCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 479999999987 3 2222222222 2223356677777 68999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.97 E-value=0.056 Score=44.50 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=59.4
Q ss_pred CCCCeEEEeccCCCccEEEEEEEEeccCCCC-eEEEEEEeCCCCcEEEEecCeEEEccCCcEEEEEEEEEecc-CCCCCc
Q 004113 668 INYPSIAVSSFDGKEGRTISRTVTNVAGNNE-TIYTVAVDAPQGLNVKVIPEELQFTKSGQKLSYQVTFTSAL-SPLKED 745 (773)
Q Consensus 668 ln~ps~~~~~~~~~~~~~~~~tvtn~~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~ 745 (773)
+..|++.+. .|+..+++.+|+|.+ ... ..-++.+..|+|=+++.. ...+ ++||+++++++|..+. ...+.|
T Consensus 6 ~t~p~~~v~---pG~~~~~~vtVtN~g-~~~~~~~~~~~~~P~GW~v~~~--~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y 78 (103)
T d1w8oa1 6 FTIPDVALE---PGQQVTVPVAVTNQS-GIAVPKPSLQLDASPDWQVQGS--VEPL-MPGRQAKGQVTITVPAGTTPGRY 78 (103)
T ss_dssp EECCCEEEC---TTCEEEEEEEEECCS-SSCBSSCEEEEECCTTSEEEEE--ECCB-CTTCEEEEEEEEECCTTCCCEEE
T ss_pred ccCcceeeC---CCCeEEEEEEEEeCC-CCceeeeeEEEcCCCCccccCc--ceee-CCCCcEEEEEEEECCCCCCCceE
Confidence 445776664 245899999999999 544 345778889999887644 4445 6899999999999974 344445
Q ss_pred EEEEEEEECCceeEEEEE
Q 004113 746 VFGSITWSNGKYKVRSLF 763 (773)
Q Consensus 746 ~~G~l~~~~~~~~v~~P~ 763 (773)
.. .++.+.+.......|
T Consensus 79 ~i-~~~a~~~~~~~s~t~ 95 (103)
T d1w8oa1 79 RV-GATLRTSAGNASTTF 95 (103)
T ss_dssp EE-EEEEEETTEEEEEEE
T ss_pred EE-EEEEEeCCcceEEEE
Confidence 43 355555544333333
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0043 Score=57.27 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=53.2
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCCccc---------------ccc-----------------
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQSRAV---------------ASS----------------- 448 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~---------------~~~----------------- 448 (773)
..+++|||+|+++|. +.+.+|..+|+.+||.|+|+|.+..+.. ..+
T Consensus 58 ~~~v~GkI~l~r~G~--~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~ 135 (193)
T d1de4c2 58 YTPVNGSIVIVRAGK--ITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPS 135 (193)
T ss_dssp SSCCTTSEEEEESCS--SCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSC
T ss_pred ccccCceEEEEeCCC--CCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcc
Confidence 357899999999965 5789999999999999999998644110 000
Q ss_pred ----CccccEEEecHHHHHHHHHHHh
Q 004113 449 ----YGTFPLTVISSKEAAEILAYIN 470 (773)
Q Consensus 449 ----~~~~p~~~i~~~~~~~l~~~~~ 470 (773)
--.||+.-|+..|++.|+..+.
T Consensus 136 ~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 136 RSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred ccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 0147999999999999988653
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.053 Score=51.37 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=35.3
Q ss_pred cccccceEEEEecCCCCCchhhhhcccccCCceEEEEEeCCC
Q 004113 401 GALVKGKIVLCDNDDDMGSVVDKKDGVKSLGGVGVIVIDDQS 442 (773)
Q Consensus 401 ~~~~~gki~l~~~~~~~~~~~~k~~~~~~~Ga~g~i~~~~~~ 442 (773)
..+++|||+|+++|. +.+.+|..+|+..||.|+|+|++..
T Consensus 76 gi~~~gkIvl~ryG~--~~~~~Kv~~A~~~GA~GviiysDP~ 115 (233)
T d3bi1a2 76 KINCSGKIVIARYGK--VFRGNKVKNAQLAGAKGVILYSDPA 115 (233)
T ss_dssp CCCCTTCEEEEECCS--SCHHHHHHHHHHTTCSEEEEECCHH
T ss_pred CCcccceEEEEeCCC--CchhHHHHHHHHcCceEEEEecChH
Confidence 358899999999965 6699999999999999999999753
|