Citrus Sinensis ID: 004127
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 772 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN14 | 999 | Multiple C2 and transmemb | no | no | 0.488 | 0.377 | 0.226 | 3e-18 | |
| Q6DN12 | 878 | Multiple C2 and transmemb | no | no | 0.858 | 0.755 | 0.220 | 4e-16 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | no | no | 0.537 | 0.472 | 0.232 | 5e-13 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | no | no | 0.310 | 0.284 | 0.263 | 3e-12 | |
| O35681 | 587 | Synaptotagmin-3 OS=Mus mu | no | no | 0.278 | 0.366 | 0.305 | 1e-11 | |
| P40748 | 588 | Synaptotagmin-3 OS=Rattus | no | no | 0.281 | 0.369 | 0.304 | 1e-11 | |
| Q9BQG1 | 590 | Synaptotagmin-3 OS=Homo s | no | no | 0.274 | 0.359 | 0.305 | 2e-11 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.154 | 0.116 | 0.327 | 2e-11 | |
| P41885 | 1106 | Rabphilin-1 OS=Caenorhabd | no | no | 0.327 | 0.228 | 0.264 | 3e-11 | |
| C9J798 | 803 | Putative Ras GTPase-activ | no | no | 0.292 | 0.281 | 0.261 | 4e-11 |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 103/454 (22%), Positives = 183/454 (40%), Gaps = 77/454 (16%)
Query: 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDR 97
M L + + + + L +D G+ DPYV+ K+G + +K K NP W + D
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDH 319
Query: 98 IQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLA---PQW----------- 142
++ L + V D D L DD +G DL ++ P D L P +
Sbjct: 320 LREP-LYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGIILLS 378
Query: 143 YRLEDRKGDKVKTGELMLAVWMGTQADEAFPDA-----------WHSDA----------- 180
L ++G+ LM W + + + + W +
Sbjct: 379 VILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPALPVLGFCR 438
Query: 181 ATVSGEGVANIR--------SKVYLSPKLW--YVRVNIIEAQDLLPSDKSRFPEVFVKAI 230
A + N++ S ++ LW V + +IE +DL D + + +VK
Sbjct: 439 AELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFR 498
Query: 231 LGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQ 290
LG+Q +++I P KT+NP W E F E + +T D+ A +D+ +G+C + L
Sbjct: 499 LGHQKYKSKIMP-KTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGRCQVDLS 557
Query: 291 AVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDL 350
A+ R HK + + E H++ + + + + D S + D
Sbjct: 558 ALSREQTHK-LELQLEEGEGHLV-------------LLVTLTASATVSISDLSVNSLEDQ 603
Query: 351 RPTAKQLWKPS----------IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWV 400
+ + L + S +G L++ V+ A GL D G +D +CV + +
Sbjct: 604 KEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLM---AADVTGKSDPFCVVELNNDRL 660
Query: 401 RTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFD 434
T T+ + P WN+ +T+ + D +V+ V V+D
Sbjct: 661 LTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYD 694
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Homo sapiens (taxid: 9606) |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 173/786 (22%), Positives = 311/786 (39%), Gaps = 123/786 (15%)
Query: 9 DFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLY-VRVVKAKDLPGKDVTGSCDPYVEV 67
D TS S+ G+ +L YL + + + ++L +D G+ DPYV+
Sbjct: 162 DLNASMTSQHFEEQSVPGEASDGLSNLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKF 221
Query: 68 KL-GNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLN 126
KL G +K K NP W++ + L V V D+D+ D +G L+
Sbjct: 222 KLNGKTLYKSKVIYKNLNPVWDEIVVLPIQSLDQK-LRVKVYDRDLTTSDFMGSAFVILS 280
Query: 127 EVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGE 186
++ + L +LED + G ++L + + + + W + + +
Sbjct: 281 DLELNRTTEHIL-----KLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRWSNRKRLSASK 335
Query: 187 G--VANIR-SKVYLSPKLW--YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRIS 241
+ N+R S+ +LW + + ++E +++ E+FV+ LG+Q +++ +
Sbjct: 336 SSLIRNLRLSESLKKNQLWNGIISITLLEGKNV---SGGSMTEMFVQLKLGDQRYKSK-T 391
Query: 242 PSKTINPMWNEDLMFVAAEPFEEPL-ILTVEDRVAPNK--DEVLGKCLIPLQAVQRRLDH 298
K+ NP W E F F + + IL +E NK +E LG C + + A L
Sbjct: 392 LCKSANPQWQEQFDF---HYFSDRMGILDIEVWGKDNKKHEERLGTCKVDISA----LPL 444
Query: 299 KPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLW 358
K N L+ + + L C G V D +DL KQ+
Sbjct: 445 KQANCLELPLDSCL--------GALLMLVTLTPC--AGVSVSDLCVCPLADL-SERKQIT 493
Query: 359 K-----------PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD 407
+ +GIL++ VL A L D G +D +C+ + G ++T T+
Sbjct: 494 QRYCLQNSLKDVKDVGILQVKVLKAADLL---AADFSGKSDPFCLLELGNDRLQTHTVYK 550
Query: 408 SFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYT 467
+ P WN+ +T+ + D V+ V VFD + G +GKV I L ++ +
Sbjct: 551 NLNPEWNKVFTFPIKDIHDVLEVTVFD------EDGDKPPDFLGKVAIPLLSIRDGQPNC 604
Query: 468 HSYPLLVLHPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLR 527
+ V K +++ A + +++++ +P+
Sbjct: 605 Y-----------VLKNKDLEQAFKGVIYLEMDLIY-------------NPVK-------- 632
Query: 528 HQAMQIVSIRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWF 587
SI R P K VE DS S + + R+ + ++ + ++
Sbjct: 633 ------ASI---RTFTPREKRFVE-----DSRKLSKKILSRDVDRVKRITMAIWNTMQFL 678
Query: 588 DQICNWKNPLTTILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLS 647
W++ L + + +F+I V EL + + L L LI ++NF RP + S
Sbjct: 679 KSCFQWESTLRSTIAFAVFLITVWNFELYM--IPLALLLIFVYNF-IRPVKGKVSSIQDS 735
Query: 648 HAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISW 707
DE DE+ + + M D I VQ V+ ++A+ GER ++ +W
Sbjct: 736 QESTDIDDEEDEDDKESEKKGLIERIYMVQD----IVSTVQNVLEEIASFGERIKNTFNW 791
Query: 708 RDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKL-------PSVPLNF 760
P ++L A I+LY P + + L+ GI +F KL + L+F
Sbjct: 792 TVPFLSSLACLILAAATIILYFIPLRYIILIWGIN-----KFTKKLRNPYSIDNNELLDF 846
Query: 761 FRRLPA 766
R+P+
Sbjct: 847 LSRVPS 852
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Homo sapiens (taxid: 9606) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 110/473 (23%), Positives = 186/473 (39%), Gaps = 58/473 (12%)
Query: 9 DFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLY-VRVVKAKDLPGKDVTGSCDPYVEV 67
D TS S G+ C L YL + + + ++L +D G+ DPYV+
Sbjct: 162 DLNASMTSQHFEEESTLGEASDCVSHLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKF 221
Query: 68 KL-GNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVM---- 122
KL G +K K NP W++ + L V V D+D+ D +G
Sbjct: 222 KLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSLDQK-LRVKVYDRDLTKSDFMGSAFVVLR 280
Query: 123 -FDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAA 181
+LN + I +LED + G ++L + + + + W S+
Sbjct: 281 DLELNRTTEHI----------LKLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRW-SNRK 329
Query: 182 TVSGEGVANIR----SKVYLSPKLW--YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA 235
+S + IR S+ +LW + + ++E +++ E+FV+ LG Q
Sbjct: 330 RLSASKSSLIRNLRLSESLRKNQLWNGIISITLLEGKNV---SGGNMTEMFVQLKLGEQR 386
Query: 236 SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRR 295
+++ + K+ NP W E F L + V + + +E LG C + + A+ +
Sbjct: 387 YKSK-TLCKSANPQWQEQFDFHYFSDRMGILDIEVWGKDSKKHEERLGTCKVDISALPLK 445
Query: 296 LDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVL------DESTHYSSD 349
D+ LE + E + I L C L D S
Sbjct: 446 QDN--------CLELPL----ESCQGALLMLITLTPCTGVSISDLCVCPFEDPSERQQIS 493
Query: 350 LRPTAKQLWK--PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD 407
R + K +GIL++ VL A L D G +D +C+ + G ++T TI
Sbjct: 494 QRYAFQNSLKDVKDVGILQVKVLKASDLL---AADFSGKSDPFCLLELGNDRLQTHTIYK 550
Query: 408 SFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL 460
+ P WN+ +T+ + D V+ V VFD + G +GKV I L ++
Sbjct: 551 NLNPEWNKVFTFPIKDIHDVLEVTVFD------EDGDKAPDFLGKVAIPLLSI 597
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Mus musculus (taxid: 10090) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 33/273 (12%)
Query: 42 LYVRVVKAKDLPGKD------VTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSK 95
L + ++A+DL GKD V G DPY +++GN +K ++ +P+WN+ +
Sbjct: 311 LRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSKVIKENLSPKWNEVYEALV 370
Query: 96 DRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKT 155
LE+ + D+D DD +G +M DL EV K L +W+ L D+V
Sbjct: 371 YEHPGQELEIELFDEDPDKDDFLGSLMIDLIEVEK-----ERLLDEWFTL-----DEVPK 420
Query: 156 GELMLAV-WMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDL 214
G+L L + W+ D A D +D + + S + + +++
Sbjct: 421 GKLHLKLEWLTLMPDAANLDKVLADIRADKDQASDGLSSALL---------ILYLDSARN 471
Query: 215 LPSDK--SRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVED 272
LPS K + P V+ +G++A ++I KT P+W E+ F P + L + V+D
Sbjct: 472 LPSGKKINSNPNPLVQMSVGHKAQESKIR-YKTSEPVWEENFTFFIHNPRRQDLEVEVKD 530
Query: 273 RVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRW 305
LG IPL + D+ +N R+
Sbjct: 531 E---QHQCSLGSLRIPLSQLLTS-DNMTINQRF 559
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May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|O35681|SYT3_MOUSE Synaptotagmin-3 OS=Mus musculus GN=Syt3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 118/265 (44%), Gaps = 50/265 (18%)
Query: 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSNPEWNQCFAFSK-- 95
+L VR+++A DLP KD G DPYV++ L K TK K NP +N+ F FS
Sbjct: 312 HLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 371
Query: 96 DRIQASVLEVLVKDKD-VVLDDLIGRVMFD-LNEVPKRIPPDSPLAPQWYRLEDRKGDKV 153
+ L V D D DLIG+V+ D L E+ ++ PPD PL W + + +K
Sbjct: 372 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDILEGGSEKA 427
Query: 154 KTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQD 213
GEL ++ YL P + V II+A +
Sbjct: 428 DLGELNFSL--------------------------------CYL-PTAGRLTVTIIKASN 454
Query: 214 LLPSDKSRFPEVFVKAILGNQASRTRISPS----KTINPMWNEDLMF-VAAEPFEE-PLI 267
L D + F + +VKA L ++ R + + T+NP +NE L+F VA E E L
Sbjct: 455 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLS 514
Query: 268 LTVEDRVAPNKDEVLGKCLIPLQAV 292
+ V D +EV+G C + +A
Sbjct: 515 IAVVDYDCIGHNEVIGVCRVGPEAA 539
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May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Mus musculus (taxid: 10090) |
| >sp|P40748|SYT3_RAT Synaptotagmin-3 OS=Rattus norvegicus GN=Syt3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 121/273 (44%), Gaps = 56/273 (20%)
Query: 39 MQYLY------VRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSNPEWNQ 89
++YLY VR+++A DLP KD G DPYV++ L K TK K NP +N+
Sbjct: 305 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 364
Query: 90 CFAFSK--DRIQASVLEVLVKDKD-VVLDDLIGRVMFD-LNEVPKRIPPDSPLAPQWYRL 145
F FS + L V D D DLIG+V+ D L E+ ++ PPD PL W +
Sbjct: 365 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 420
Query: 146 EDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVR 205
+ +K GEL ++ YL P +
Sbjct: 421 LEGGSEKADLGELNFSL--------------------------------CYL-PTAGLLT 447
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPS----KTINPMWNEDLMF-VAAE 260
V II+A +L D + F + +VKA L ++ R + + T+NP +NE L+F VA E
Sbjct: 448 VTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 507
Query: 261 PFEE-PLILTVEDRVAPNKDEVLGKCLIPLQAV 292
E L + V D +EV+G C + +A
Sbjct: 508 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 540
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May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Rattus norvegicus (taxid: 10116) |
| >sp|Q9BQG1|SYT3_HUMAN Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 119/268 (44%), Gaps = 56/268 (20%)
Query: 39 MQYLY------VRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSNPEWNQ 89
++YLY VR+++A DLP KD G DPYV++ L K TK K NP +N+
Sbjct: 307 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPVFNE 366
Query: 90 CFAFSK--DRIQASVLEVLVKDKD-VVLDDLIGRVMFD-LNEVPKRIPPDSPLAPQWYRL 145
F FS + L V D D DLIG+V+ D L E+ ++ PPD PL W +
Sbjct: 367 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 422
Query: 146 EDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVR 205
+ +K GEL ++ YL P +
Sbjct: 423 VEGGSEKADLGELNFSL--------------------------------CYL-PTAGRLT 449
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPS----KTINPMWNEDLMF-VAAE 260
V II+A +L D + F + +VKA L ++ R + + T+NP +NE L+F VA E
Sbjct: 450 VTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 509
Query: 261 PFEE-PLILTVEDRVAPNKDEVLGKCLI 287
E L + V D +EV+G C +
Sbjct: 510 SVENVGLSIAVVDYDCIGHNEVIGVCRV 537
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQAS 101
L VRVV+A++LP D+ G DPYV ++LG + TK +K NP+W + F+F D +
Sbjct: 3 LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62
Query: 102 VLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE-DRKGDKVKTGELML 160
++ ++ + DD +G+V ++ V + L WY L +KG K GE++L
Sbjct: 63 LVVSVLDEDKYFNDDFVGQVRVSVSLVFD--AENQSLGTVWYPLNPKKKGSKKDCGEILL 120
Query: 161 AV 162
+
Sbjct: 121 KI 122
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P41885|RBF1_CAEEL Rabphilin-1 OS=Caenorhabditis elegans GN=rbf-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 130/306 (42%), Gaps = 53/306 (17%)
Query: 6 QAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYV 65
+AI + + S GSIT L+ TY ++ L + +++AK+L D G DPYV
Sbjct: 813 KAITASTESASEPGSLGSIT---LTLTYHSADKK--LKMHLIRAKNLKAMDSNGFSDPYV 867
Query: 66 EVKL--GNYKG---TTKHFEKKSNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVLDDL 117
+ L GN K T+K EK NPEWN+ ++ ++D + +L V V D+D + D
Sbjct: 868 KFHLLPGNTKATKLTSKTIEKTLNPEWNEEMSYYGITEDDKEKKILRVTVLDRDRIGSDF 927
Query: 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWH 177
+G L +L D +++K L L + A P
Sbjct: 928 LGETRIALK-----------------KLND---NEMKKFNLYL--------ESALPVPQQ 959
Query: 178 SDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAIL---GNQ 234
+ G N+ + + + +NI +L+ D + F + + K L ++
Sbjct: 960 TKEEENEDRGKINVGLQYNIQQGSLF--ININRCVELVGMDSTGFSDPYCKVSLTPITSK 1017
Query: 235 ASRTRISPSK-TINPMWNEDLMFVAAEPFEE----PLILTVEDRVAPNKDEVLGKCLIPL 289
A R + S K T+NP WNE L FV PF++ L + V D D+ +G L+
Sbjct: 1018 AHRAKTSTKKRTLNPEWNEQLQFVV--PFKDLPKKTLQIGVYDHDLGKHDDYIGGILLST 1075
Query: 290 QAVQRR 295
A R
Sbjct: 1076 SAKDER 1081
|
Rab-3 effector. Caenorhabditis elegans (taxid: 6239) |
| >sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 110/271 (40%), Gaps = 45/271 (16%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT-TKHFEKKSNPEWNQCFAFSKDRIQA 100
LY+R+V+ K+LP KD+TGS DPY VK+ N T K P W + +
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66
Query: 101 SVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGE--L 158
+V ++ + + DD+IG+V + + S W L + D+ GE L
Sbjct: 67 AVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFS----GWAHLTEVDPDEEVQGEIHL 122
Query: 159 MLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSD 218
L VW G +A +R +++EA+DL P D
Sbjct: 123 RLEVWPGARA---------------------------------CRLRCSVLEARDLAPKD 149
Query: 219 KSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNK 278
++ + FV+ + T I K+ P WNE F E E L + D ++
Sbjct: 150 RNGTSDPFVRVRYKGRTRETSIV-KKSCYPRWNETFEFELQEGAMEALCVEAWDWDLVSR 208
Query: 279 DEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
++ LGK +I +Q RL WF L+
Sbjct: 209 NDFLGKVVIDVQ----RLRVVQQEEGWFRLQ 235
|
Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 772 | ||||||
| 255544770 | 772 | synaptotagmin, putative [Ricinus communi | 0.998 | 0.998 | 0.882 | 0.0 | |
| 224053388 | 772 | predicted protein [Populus trichocarpa] | 0.998 | 0.998 | 0.904 | 0.0 | |
| 356538925 | 777 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.992 | 0.853 | 0.0 | |
| 15230882 | 773 | calcium-dependent lipid-binding domain-c | 0.997 | 0.996 | 0.847 | 0.0 | |
| 14030691 | 773 | AT3g57880/T10K17_90 [Arabidopsis thalian | 0.997 | 0.996 | 0.846 | 0.0 | |
| 110739553 | 773 | anthranilate phosphoribosyltransferase-l | 0.997 | 0.996 | 0.846 | 0.0 | |
| 297807311 | 769 | C2 domain-containing protein [Arabidopsi | 0.996 | 1.0 | 0.865 | 0.0 | |
| 15239959 | 769 | calcium-dependent lipid-binding domain-c | 0.996 | 1.0 | 0.863 | 0.0 | |
| 449453842 | 776 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.993 | 0.844 | 0.0 | |
| 357509865 | 775 | Anthranilate phosphoribosyltransferase-l | 0.996 | 0.992 | 0.844 | 0.0 |
| >gi|255544770|ref|XP_002513446.1| synaptotagmin, putative [Ricinus communis] gi|223547354|gb|EEF48849.1| synaptotagmin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1425 bits (3689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/773 (88%), Positives = 737/773 (95%), Gaps = 2/773 (0%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQK PQA+DFALKETSP IGA ++TGDKLSCTYDLVEQMQYLYVRVVKA+DLPGKDVTGS
Sbjct: 1 MQKPPQAVDFALKETSPNIGAAAVTGDKLSCTYDLVEQMQYLYVRVVKARDLPGKDVTGS 60
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPY+EVK+GNYKG TKHFEKK+NPEWNQ FAFSK+RIQAS+LEV VKDKDVVLDDLIGR
Sbjct: 61 CDPYIEVKMGNYKGVTKHFEKKTNPEWNQVFAFSKERIQASILEVSVKDKDVVLDDLIGR 120
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
++F+LNE+PKR+PPDSPLAPQWYRLEDRKGDK+K GELMLAVWMGTQADEAFPDAWHSDA
Sbjct: 121 IIFELNEIPKRVPPDSPLAPQWYRLEDRKGDKIKHGELMLAVWMGTQADEAFPDAWHSDA 180
Query: 181 ATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRI 240
A V +GVANIRSKVYLSPKLWYVRVN+IEAQDLLP DKSRFPE FVK GNQA RTR+
Sbjct: 181 AAVGPDGVANIRSKVYLSPKLWYVRVNVIEAQDLLPGDKSRFPEAFVKVTFGNQALRTRV 240
Query: 241 SPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKP 300
S S++I+P+WNEDL+FVAAEPFEEPLILTVEDRV PNKDE+LGKC+IPLQ VQRRLDHKP
Sbjct: 241 SQSRSIHPLWNEDLIFVAAEPFEEPLILTVEDRVGPNKDEILGKCVIPLQLVQRRLDHKP 300
Query: 301 VNTRWFNLEKHVIVD-GEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWK 359
VNTRW+NLEKHVI + +KKE KF+SR+HLRICL+GGYHVLDESTHYSSDLRPTAKQLW+
Sbjct: 301 VNTRWYNLEKHVIGEVDQKKEIKFASRVHLRICLEGGYHVLDESTHYSSDLRPTAKQLWR 360
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTW 419
PSIGILELG+LSA GL P+KTKDGRGTTDAYCVAKYGQKW+R+RTIVDSF PRWNEQYTW
Sbjct: 361 PSIGILELGILSAVGLIPVKTKDGRGTTDAYCVAKYGQKWIRSRTIVDSFTPRWNEQYTW 420
Query: 420 EVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSG 479
EVFDPCTVIT+GV+DNGH+HG G GGKDSRIGKVRIRLSTLETDRVYTHSYPL+VL SG
Sbjct: 421 EVFDPCTVITIGVYDNGHVHG-GSGGKDSRIGKVRIRLSTLETDRVYTHSYPLIVLQSSG 479
Query: 480 VRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIRLN 539
V+KMGE+QLAVRFTCSSLINMLHMYS PLLPKMHYIHPLSVIQLDSLRHQAMQIVS+RL+
Sbjct: 480 VKKMGELQLAVRFTCSSLINMLHMYSHPLLPKMHYIHPLSVIQLDSLRHQAMQIVSMRLS 539
Query: 540 RAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPLTT 599
RAEPPLRKEVVE+MLDVDSHMWSMRRSKANFFRIMGVL LI+VGKWFDQICNWKNPLTT
Sbjct: 540 RAEPPLRKEVVEHMLDVDSHMWSMRRSKANFFRIMGVLRGLIAVGKWFDQICNWKNPLTT 599
Query: 600 ILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDE 659
ILIHILFIILVLYPEL+LPT+FLYLFLIGIWNFRWRPRHPPHMDTRLSHA+AAHPDELDE
Sbjct: 600 ILIHILFIILVLYPELLLPTIFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAAHPDELDE 659
Query: 660 EFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFVTF 719
EFDTFPTTK SD+VRMRYDRLRSIAGRVQTV+GDLATQGERFQSL+SWRDPRATTLFV F
Sbjct: 660 EFDTFPTTKSSDMVRMRYDRLRSIAGRVQTVVGDLATQGERFQSLLSWRDPRATTLFVIF 719
Query: 720 CLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
CLIAA+VLYVTPFQVVALL GIY+LRHPRFRHKLPSVPLNFFRRLPARSDSM+
Sbjct: 720 CLIAALVLYVTPFQVVALLVGIYMLRHPRFRHKLPSVPLNFFRRLPARSDSMI 772
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053388|ref|XP_002297795.1| predicted protein [Populus trichocarpa] gi|222845053|gb|EEE82600.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1411 bits (3653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 699/773 (90%), Positives = 737/773 (95%), Gaps = 2/773 (0%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQK PQ++DFALKETSP IGAGS+TG+KLSCTYDLVEQMQYLYVRVVKA+DLP KDVTGS
Sbjct: 1 MQKLPQSVDFALKETSPNIGAGSVTGNKLSCTYDLVEQMQYLYVRVVKARDLPPKDVTGS 60
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPYVEVKLGNYKG TKHFEKKSNPEWNQ FAFSKDRIQASVLEV VKDKDVVLDDLIG
Sbjct: 61 CDPYVEVKLGNYKGVTKHFEKKSNPEWNQVFAFSKDRIQASVLEVFVKDKDVVLDDLIGW 120
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
+MFDLNEVPKR+PPDSPLAPQWYRLEDRKG K+K+GELMLAVWMGTQADEAFPDAWHSDA
Sbjct: 121 MMFDLNEVPKRVPPDSPLAPQWYRLEDRKGGKIKSGELMLAVWMGTQADEAFPDAWHSDA 180
Query: 181 ATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRI 240
A+V +GV NIRSKVYLSPKLWYVRVN+IEAQDL+PSDKSRFPEVFVK LGNQA RTR
Sbjct: 181 ASVGPDGVNNIRSKVYLSPKLWYVRVNVIEAQDLVPSDKSRFPEVFVKGTLGNQALRTRT 240
Query: 241 SPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKP 300
S KTINPMW++DL+FVA EPFEEPLILTVEDR+ PNKDEVLGKC+IPLQ VQRRLDHKP
Sbjct: 241 SHIKTINPMWDDDLIFVAPEPFEEPLILTVEDRLGPNKDEVLGKCVIPLQLVQRRLDHKP 300
Query: 301 VNTRWFNLEKHVIVDGE-KKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWK 359
VNTRWFNLEKHV++DGE KKETKFSSRIH+RICLDGGYHVLDESTHYSSDLRPTAKQLW+
Sbjct: 301 VNTRWFNLEKHVVLDGELKKETKFSSRIHVRICLDGGYHVLDESTHYSSDLRPTAKQLWR 360
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTW 419
PSIGILELGVLSA GL PMK KDGRGTTDAYCVAKYGQKWVRTRTIVDSF PRWNEQYTW
Sbjct: 361 PSIGILELGVLSAVGLMPMKMKDGRGTTDAYCVAKYGQKWVRTRTIVDSFTPRWNEQYTW 420
Query: 420 EVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSG 479
EVFDPCTVITVGVFDNGH+HG GGG KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP+G
Sbjct: 421 EVFDPCTVITVGVFDNGHLHGGGGG-KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPAG 479
Query: 480 VRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIRLN 539
V+K GEVQLAVRFTCSSL+NMLHMYS PLLPKMHYI PLSV+QLDSLRHQAMQIVS+RL+
Sbjct: 480 VKKTGEVQLAVRFTCSSLVNMLHMYSHPLLPKMHYIQPLSVMQLDSLRHQAMQIVSMRLS 539
Query: 540 RAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPLTT 599
RAEPPLRKEVVEYMLDVD H WSMRRSKANFFRIMGVLS LI+VGKWFDQICNWKNPLTT
Sbjct: 540 RAEPPLRKEVVEYMLDVDLHKWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPLTT 599
Query: 600 ILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDE 659
ILIH+LFIILVLYPELILPTVFLYLF+IG+WNFRWRPRHPPHMDTRLSHA+AAHPDELDE
Sbjct: 600 ILIHLLFIILVLYPELILPTVFLYLFVIGLWNFRWRPRHPPHMDTRLSHADAAHPDELDE 659
Query: 660 EFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFVTF 719
EFDTFPT++ SDIVRMRYDRLRSIAGRVQTV+GDLATQGERFQSL+SWRDPRATTLFVTF
Sbjct: 660 EFDTFPTSRPSDIVRMRYDRLRSIAGRVQTVVGDLATQGERFQSLLSWRDPRATTLFVTF 719
Query: 720 CLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
CLIAAIVLYVTPFQVV LL GIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML
Sbjct: 720 CLIAAIVLYVTPFQVVGLLIGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538925|ref|XP_003537951.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1403 bits (3632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/778 (85%), Positives = 724/778 (93%), Gaps = 7/778 (0%)
Query: 1 MQKSPQA--IDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT 58
MQK+P A +FALKETSPKIGAG++T DKLSCTYDLVEQMQYLYVRVVKAKDLP KDVT
Sbjct: 1 MQKAPLAHSNEFALKETSPKIGAGAVTRDKLSCTYDLVEQMQYLYVRVVKAKDLPSKDVT 60
Query: 59 GSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLI 118
GS DPYVEVKLGNYKG TKHFEKKSNPEWNQ FAFSKDRIQASVLEV+VKDKDV+ DD +
Sbjct: 61 GSLDPYVEVKLGNYKGLTKHFEKKSNPEWNQVFAFSKDRIQASVLEVIVKDKDVISDDFV 120
Query: 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHS 178
GR+ FDLNE+PKR+PPDSPLAPQWYRLEDRKG+KVK GE+MLAVWMGTQADEAFPD+WHS
Sbjct: 121 GRMWFDLNEIPKRVPPDSPLAPQWYRLEDRKGEKVK-GEIMLAVWMGTQADEAFPDSWHS 179
Query: 179 DAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRT 238
DAA V E V+NIRSKVYLSPKLWYVRVN+IEAQDL+P DK+RFPEV+VK LGNQ RT
Sbjct: 180 DAAMVGSEAVSNIRSKVYLSPKLWYVRVNVIEAQDLIPGDKTRFPEVYVKINLGNQFLRT 239
Query: 239 RISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH 298
R+S SKT+NPMWNEDLM VAAEPFEEPLIL+VEDR+ PNKDEVLG+C+IPLQ VQRRLDH
Sbjct: 240 RVSQSKTMNPMWNEDLMLVAAEPFEEPLILSVEDRLGPNKDEVLGRCVIPLQIVQRRLDH 299
Query: 299 KPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLW 358
KPVNTRWFNLEKHV+V+GEKKE KF+SRIHLR+CLDGG+HVLDESTHYSSDLRPTAKQLW
Sbjct: 300 KPVNTRWFNLEKHVVVEGEKKEIKFASRIHLRMCLDGGFHVLDESTHYSSDLRPTAKQLW 359
Query: 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYT 418
KP+IGILE+G++SA GL PMKT+DGRGTTDAYCVAKYGQKW+RTRT+VDSF P+WNEQYT
Sbjct: 360 KPNIGILEVGIISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTLVDSFTPKWNEQYT 419
Query: 419 WEVFDPCTVITVGVFDNGHIHGQGGG----GKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474
WEVFDPCTVIT+GVFDNGHI G G KDSRIGKVRIRLSTLE DRVYTHSYPLL
Sbjct: 420 WEVFDPCTVITIGVFDNGHIQGGGEKGGGGSKDSRIGKVRIRLSTLEADRVYTHSYPLLA 479
Query: 475 LHPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIV 534
LH SGV+K GE+QLAVRFT SS INML++YSQPLLPKMHYIHPLSVIQLDSLRHQAMQIV
Sbjct: 480 LHTSGVKKTGELQLAVRFTNSSFINMLYLYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIV 539
Query: 535 SIRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWK 594
S+RL+RAEPPL KEVVEYMLDVDSHMWSMRRSKANFFRIM VLS L++ G+WFDQICNWK
Sbjct: 540 SMRLSRAEPPLSKEVVEYMLDVDSHMWSMRRSKANFFRIMKVLSGLVAFGRWFDQICNWK 599
Query: 595 NPLTTILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHP 654
NP+TTILIH+LFIILVLYPELILPT+FLYLFLIGIWNFRWRPRHPPHMDTRLSHA+AAHP
Sbjct: 600 NPITTILIHVLFIILVLYPELILPTIFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAAHP 659
Query: 655 DELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATT 714
DELDEEFDTFPT++ SDIVRMRYDRLRSIAGRVQ+V+GDL TQGERFQSL+SWRDPRATT
Sbjct: 660 DELDEEFDTFPTSRSSDIVRMRYDRLRSIAGRVQSVVGDLGTQGERFQSLLSWRDPRATT 719
Query: 715 LFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
LFVTFC +AAIVLYVTPFQVV+LL G ++LRHPRFRHKLPSVPLNFFRRLPARSDSML
Sbjct: 720 LFVTFCFVAAIVLYVTPFQVVSLLIGFFMLRHPRFRHKLPSVPLNFFRRLPARSDSML 777
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15230882|ref|NP_191347.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|6729531|emb|CAB67616.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|332646191|gb|AEE79712.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1399 bits (3622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/775 (84%), Positives = 726/775 (93%), Gaps = 5/775 (0%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQ+ P DF+LKET P +G G ++GDKL+ TYDLVEQMQYLYVRVVKAK+LPGKD+TGS
Sbjct: 1 MQRPPPE-DFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGS 59
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPYVEVKLGNYKGTT+HFEKKSNPEWNQ FAFSKDRIQAS LE VKDKD V DDLIGR
Sbjct: 60 CDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGR 119
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V+FDLNEVPKR+PPDSPLAPQWYRLEDRKGDKVK GELMLAVW GTQADEAFP+AWHSDA
Sbjct: 120 VVFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVK-GELMLAVWFGTQADEAFPEAWHSDA 178
Query: 181 ATVSG-EGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTR 239
ATVSG + +ANIRSKVYLSPKLWY+RVN+IEAQDL+P+DK R+PEV+VKAI+GNQA RTR
Sbjct: 179 ATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTR 238
Query: 240 ISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK 299
+S S+TINPMWNEDLMFVAAEPFEEPLIL+VEDRVAPNKDEVLG+C IPLQ + RR DHK
Sbjct: 239 VSQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHK 298
Query: 300 PVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWK 359
PVN+RW+NLEKH++VDGEKKETKF+SRIH+RICL+GGYHVLDESTHYSSDLRPTAKQLWK
Sbjct: 299 PVNSRWYNLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK 358
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTW 419
P+IG+LELG+L+A GL PMKTKDGRGTTDAYCVAKYGQKW+RTRTI+DSF PRWNEQYTW
Sbjct: 359 PNIGVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTW 418
Query: 420 EVFDPCTVITVGVFDNGHIHG--QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 477
EVFDPCTV+TVGVFDN H+HG + GG KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP
Sbjct: 419 EVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 478
Query: 478 SGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIR 537
+GV+KMGE+ LAVRFTCSSL+NM++MYSQPLLPKMHYIHPL+V QLD+LRHQA QIVS+R
Sbjct: 479 NGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMR 538
Query: 538 LNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPL 597
L RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFRIMGVLS LI+VGKWF+QICNWKNP+
Sbjct: 539 LTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPI 598
Query: 598 TTILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDEL 657
TT+LIH+LFIILVLYPELILPT+FLYLFLIGIW +RWRPRHPPHMDTRLSHA++AHPDEL
Sbjct: 599 TTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDEL 658
Query: 658 DEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFV 717
DEEFDTFPT++ SDIVRMRYDRLRSIAGR+QTV+GDLATQGER QSL+SWRDPRAT LFV
Sbjct: 659 DEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV 718
Query: 718 TFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
FCLIAA++LYVTPFQVVAL GIY LRHPRFR+KLPSVPLNFFRRLPAR+D ML
Sbjct: 719 LFCLIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14030691|gb|AAK53020.1|AF375436_1 AT3g57880/T10K17_90 [Arabidopsis thaliana] gi|21464555|gb|AAM52232.1| AT3g57880/T10K17_90 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1398 bits (3619), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/775 (84%), Positives = 726/775 (93%), Gaps = 5/775 (0%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQ+ P DF+LKET P +G G ++GDKL+ TYDLVEQMQYLYVRVVKAK+LPGKD+TGS
Sbjct: 1 MQRPPPE-DFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGS 59
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPYVEVKLGNYKGTT+HFEKKSNPEWNQ FAFSKDRIQAS LE VKDKD V DDLIGR
Sbjct: 60 CDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGR 119
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V+FDLNEVPKR+PPDSPLAPQWYRLEDRKGDKVK GELMLAVW GTQADEAFP+AWHSDA
Sbjct: 120 VVFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVK-GELMLAVWFGTQADEAFPEAWHSDA 178
Query: 181 ATVSG-EGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTR 239
ATVSG + +ANIRSKVYLSPKLWY+RVN+IEAQDL+P+DK R+PEV+VKAI+GNQA RTR
Sbjct: 179 ATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTR 238
Query: 240 ISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK 299
+S S+TINPMWNEDLMFVAAEPFEEPLIL+VEDRVAPNKDEVLG+C IPLQ + RR DHK
Sbjct: 239 VSQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHK 298
Query: 300 PVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWK 359
PVN+RW+NLEKH++VDGEKKETKF+SRIH+RICL+GGYHVLDESTHYSSDLRPTAKQLWK
Sbjct: 299 PVNSRWYNLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK 358
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTW 419
P+IG+LELG+L+A GL PMKTKDGRGTTDAYCVAKYGQKW+RTRTI+DSF PRWNEQYTW
Sbjct: 359 PNIGVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTW 418
Query: 420 EVFDPCTVITVGVFDNGHIHG--QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 477
EVFDPCTV+TVGVFDN H+HG + GG KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP
Sbjct: 419 EVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 478
Query: 478 SGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIR 537
+GV+KMGE+ LAVRFTCSSL+NM++MYSQPLLPKMHYIHPL+V QLD+LRHQA QIVS+R
Sbjct: 479 NGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMR 538
Query: 538 LNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPL 597
L +AEPPLRKEVVEYMLDV SHMWSMRRSKANFFRIMGVLS LI+VGKWF+QICNWKNP+
Sbjct: 539 LTQAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPI 598
Query: 598 TTILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDEL 657
TT+LIH+LFIILVLYPELILPT+FLYLFLIGIW +RWRPRHPPHMDTRLSHA++AHPDEL
Sbjct: 599 TTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDEL 658
Query: 658 DEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFV 717
DEEFDTFPT++ SDIVRMRYDRLRSIAGR+QTV+GDLATQGER QSL+SWRDPRAT LFV
Sbjct: 659 DEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV 718
Query: 718 TFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
FCLIAA++LYVTPFQVVAL GIY LRHPRFR+KLPSVPLNFFRRLPAR+D ML
Sbjct: 719 LFCLIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110739553|dbj|BAF01685.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1398 bits (3618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/775 (84%), Positives = 725/775 (93%), Gaps = 5/775 (0%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQ+ P DF+LKET P +G G ++GDKL+ TYDLVEQMQYLYVRVVKAK+LPGKD+TGS
Sbjct: 1 MQRPPPE-DFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGS 59
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPYVEVKLGNYKGTT+HFEKKSNPEWNQ FAFSKDRIQAS LE VKDKD V DDLIGR
Sbjct: 60 CDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGR 119
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V+FDLNEVPKR+PPDSPLAPQWYRLEDRKGDKVK GELMLAVW GTQADEAFP+AWHSDA
Sbjct: 120 VVFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVK-GELMLAVWFGTQADEAFPEAWHSDA 178
Query: 181 ATVSG-EGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTR 239
ATVSG + +ANIRSKVYLSPKLWY+RVN+IEAQDL+P+DK R+PEV+VKAI+GNQA RTR
Sbjct: 179 ATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTR 238
Query: 240 ISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK 299
+S S+TINPMWNEDLMFVAAEPFEEPLIL+VEDRVAPNKDE LG+C IPLQ + RR DHK
Sbjct: 239 VSQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEALGRCAIPLQYLDRRFDHK 298
Query: 300 PVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWK 359
PVN+RW+NLEKH++VDGEKKETKF+SRIH+RICL+GGYHVLDESTHYSSDLRPTAKQLWK
Sbjct: 299 PVNSRWYNLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK 358
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTW 419
P+IG+LELG+L+A GL PMKTKDGRGTTDAYCVAKYGQKW+RTRTI+DSF PRWNEQYTW
Sbjct: 359 PNIGVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTW 418
Query: 420 EVFDPCTVITVGVFDNGHIHG--QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 477
EVFDPCTV+TVGVFDN H+HG + GG KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP
Sbjct: 419 EVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 478
Query: 478 SGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIR 537
+GV+KMGE+ LAVRFTCSSL+NM++MYSQPLLPKMHYIHPL+V QLD+LRHQA QIVS+R
Sbjct: 479 NGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMR 538
Query: 538 LNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPL 597
L RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFRIMGVLS LI+VGKWF+QICNWKNP+
Sbjct: 539 LTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPI 598
Query: 598 TTILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDEL 657
TT+LIH+LFIILVLYPELILPT+FLYLFLIGIW +RWRPRHPPHMDTRLSHA++AHPDEL
Sbjct: 599 TTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDEL 658
Query: 658 DEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFV 717
DEEFDTFPT++ SDIVRMRYDRLRSIAGR+QTV+GDLATQGER QSL+SWRDPRAT LFV
Sbjct: 659 DEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV 718
Query: 718 TFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
FCLIAA++LYVTPFQVVAL GIY LRHPRFR+KLPSVPLNFFRRLPAR+D ML
Sbjct: 719 LFCLIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807311|ref|XP_002871539.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317376|gb|EFH47798.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1389 bits (3596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/772 (86%), Positives = 721/772 (93%), Gaps = 3/772 (0%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQK Q I+FALKETSPKIGAG++TGDKLSCTYDLVEQM YLYVRVVKAK+LPGKDVTGS
Sbjct: 1 MQKPGQNIEFALKETSPKIGAGAVTGDKLSCTYDLVEQMHYLYVRVVKAKELPGKDVTGS 60
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPYVEVKLGNY+G TKHFEKKSNPEW Q FAFSK+RIQAS+LEV+VKDKDVVLDDLIGR
Sbjct: 61 CDPYVEVKLGNYRGMTKHFEKKSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGR 120
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
+MFDLNE+PKR+PPDSPLAPQWYRLEDR G KVK GELMLAVWMGTQADEAF DAWHSDA
Sbjct: 121 IMFDLNEIPKRVPPDSPLAPQWYRLEDRHGRKVK-GELMLAVWMGTQADEAFSDAWHSDA 179
Query: 181 ATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRI 240
A+V EGV +IRSKVYLSPKLWYVRVN+IEAQDL+P DK++FPEV+VKA+LGNQ RTRI
Sbjct: 180 ASVGPEGVTHIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRI 239
Query: 241 SPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKP 300
S +KT+NPMWNEDLMFV AEPFEE LIL VEDRVAPNKDE LG+C IPLQ VQRRLDH+P
Sbjct: 240 SQTKTLNPMWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRP 299
Query: 301 VNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKP 360
+N+RWFNLEKH++V+GEKKE KF+SRIHLRI L+GGYHVLDESTHYSSDLRPTAKQLWKP
Sbjct: 300 LNSRWFNLEKHIMVEGEKKEIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKP 359
Query: 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWE 420
SIG+LE+G++SAHGL PMKTKDG+GTTDAYCVAKYGQKW+RTRTIVDSF P+WNEQYTWE
Sbjct: 360 SIGLLEVGIISAHGLMPMKTKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWE 419
Query: 421 VFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGV 480
VFD CTVIT G FDNGHI GG GKD RIGKVRIRLSTLE DR+YTHSYPLLV HPSG+
Sbjct: 420 VFDTCTVITFGAFDNGHI--PGGSGKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGI 477
Query: 481 RKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIRLNR 540
+K GE+QLAVRFTC SLINMLHMYSQPLLPKMHYIHPLSV+QLDSLRHQAM IVS RLNR
Sbjct: 478 KKTGEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNR 537
Query: 541 AEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPLTTI 600
AEPPLRKE+VEYMLDVDSHMWSMRRSKANFFRIM VLS LI+VGKWFDQICNW+NP+TTI
Sbjct: 538 AEPPLRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTI 597
Query: 601 LIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDEE 660
LIH+LFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHA+A HPDELDEE
Sbjct: 598 LIHVLFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEE 657
Query: 661 FDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFVTFC 720
FDTFPT++ S+IVRMRYDRLRSI GRVQTVIGDLATQGERF SL+SWRDPRATTLFV FC
Sbjct: 658 FDTFPTSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFC 717
Query: 721 LIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
LIAAIVLYVTPFQVVALL GIYVLRHPRFRHKLPSVPLN FRRLPARSDS+L
Sbjct: 718 LIAAIVLYVTPFQVVALLVGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239959|ref|NP_196801.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|7630053|emb|CAB88261.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|332004453|gb|AED91836.1| calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1386 bits (3587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 667/772 (86%), Positives = 720/772 (93%), Gaps = 3/772 (0%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQK Q IDFALKETSPKIGAGS+TGDKL TYDLVEQM YLYVRVVKAK+LPGKDVTGS
Sbjct: 1 MQKPGQNIDFALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGS 60
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPYVEVKLGNY+G TKHFEK+SNPEW Q FAFSK+RIQAS+LEV+VKDKDVVLDDLIGR
Sbjct: 61 CDPYVEVKLGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGR 120
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
+MFDLNE+PKR+PPDSPLAPQWYRLEDR G KVK GELMLAVWMGTQADEAF DAWHSDA
Sbjct: 121 IMFDLNEIPKRVPPDSPLAPQWYRLEDRHGRKVK-GELMLAVWMGTQADEAFSDAWHSDA 179
Query: 181 ATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRI 240
ATV EGV +IRSKVYLSPKLWYVRVN+IEAQDL+P DK++FPEV+VKA+LGNQ RTRI
Sbjct: 180 ATVGPEGVTHIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRI 239
Query: 241 SPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKP 300
S +KT+NPMWNEDLMFV AEPFEE LIL VEDRVAPNKDE LG+C IPLQ VQRRLDH+P
Sbjct: 240 SQTKTLNPMWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRP 299
Query: 301 VNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKP 360
+N+RWFNLEKH++V+GE+KE KF+SRIHLRI L+GGYHVLDESTHYSSDLRPTAKQLWKP
Sbjct: 300 LNSRWFNLEKHIMVEGEQKEIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKP 359
Query: 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWE 420
SIG+LE+G++SAHGL PMK+KDG+GTTDAYCVAKYGQKW+RTRTIVDSF P+WNEQYTWE
Sbjct: 360 SIGLLEVGIISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWE 419
Query: 421 VFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGV 480
VFD CTVIT G FDNGHI GG GKD RIGKVRIRLSTLE DR+YTHSYPLLV HPSG+
Sbjct: 420 VFDTCTVITFGAFDNGHI--PGGSGKDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGI 477
Query: 481 RKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIRLNR 540
+K GE+QLAVRFTC SLINMLHMYSQPLLPKMHYIHPLSV+QLDSLRHQAM IVS RLNR
Sbjct: 478 KKTGEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNR 537
Query: 541 AEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPLTTI 600
AEPPLRKE+VEYMLDVDSHMWSMRRSKANFFRIM VLS LI+VGKWFDQICNW+NP+TTI
Sbjct: 538 AEPPLRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTI 597
Query: 601 LIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDEE 660
LIH+LFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHA+A HPDELDEE
Sbjct: 598 LIHVLFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEE 657
Query: 661 FDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFVTFC 720
FDTFPT++ S+IVRMRYDRLRSI GRVQTVIGDLATQGERF SL+SWRDPRATTLFV FC
Sbjct: 658 FDTFPTSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFC 717
Query: 721 LIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
LIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLN FRRLPARSDS+L
Sbjct: 718 LIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453842|ref|XP_004144665.1| PREDICTED: uncharacterized protein LOC101203090 isoform 1 [Cucumis sativus] gi|449453844|ref|XP_004144666.1| PREDICTED: uncharacterized protein LOC101203090 isoform 2 [Cucumis sativus] gi|449522819|ref|XP_004168423.1| PREDICTED: uncharacterized LOC101203090 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1385 bits (3585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 656/777 (84%), Positives = 724/777 (93%), Gaps = 6/777 (0%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
M + P DF LKET+P +G G + GDKL+ TYDLVEQM YLYVRVVKAKDLPGKDVTGS
Sbjct: 1 MMQKPPPEDFLLKETNPHLGGGKVAGDKLASTYDLVEQMYYLYVRVVKAKDLPGKDVTGS 60
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPYVEVKLGNYKGTT+HFEKKSNPEWNQ FAFSKDRIQASVLEV VKDKD V DD +GR
Sbjct: 61 CDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASVLEVSVKDKDFVKDDFMGR 120
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V+FDLNEVP+R+PPDSPLAPQWYRL+DRKGDKVK GELMLAVWMGTQADEAFP+AW+SDA
Sbjct: 121 VLFDLNEVPRRVPPDSPLAPQWYRLDDRKGDKVK-GELMLAVWMGTQADEAFPEAWNSDA 179
Query: 181 ATVSG-EGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTR 239
ATVSG +G+ANIRSKVYLSPKLWY+RVNIIEAQDL P+DK R+PEVFVKAILGNQA RTR
Sbjct: 180 ATVSGADGLANIRSKVYLSPKLWYLRVNIIEAQDLQPTDKGRYPEVFVKAILGNQALRTR 239
Query: 240 ISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK 299
IS S+TINPMWNEDLMFVAAEPFEEPLIL+VEDRVAPNKDEVLG+C I LQ + RRLDH+
Sbjct: 240 ISQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIQLQYIDRRLDHR 299
Query: 300 PVNTRWFNLEKHVIV-DGEKK-ETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQL 357
VNTRWFNLEKHV+V +GEKK E KFSSRIH+RICL+GGYHVLDESTHYSSDLRPTAKQL
Sbjct: 300 AVNTRWFNLEKHVVVVEGEKKKEIKFSSRIHMRICLEGGYHVLDESTHYSSDLRPTAKQL 359
Query: 358 WKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQY 417
WK SIG+LELG+L+A GL PMKTKDGRGTTDAYCVAKYGQKW+RTRTI+DSF P+WNEQY
Sbjct: 360 WKNSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFIPKWNEQY 419
Query: 418 TWEVFDPCTVITVGVFDNGHIHG--QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475
TWEVFDPCTVIT+GVFDN H+HG + G KD+RIGKVRIRLSTLETDRVYTHSYPLLVL
Sbjct: 420 TWEVFDPCTVITIGVFDNCHLHGGEKAGVSKDARIGKVRIRLSTLETDRVYTHSYPLLVL 479
Query: 476 HPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVS 535
HP+GV+KMGE+ LAVRFTCSSL+NMLHMYS PLLPKMHYIHPL+V QLDSLRHQA QIVS
Sbjct: 480 HPNGVKKMGEIHLAVRFTCSSLLNMLHMYSHPLLPKMHYIHPLTVSQLDSLRHQATQIVS 539
Query: 536 IRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKN 595
+RL+RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFRIMGV S LI+VGKWFDQICNW+N
Sbjct: 540 MRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVFSGLIAVGKWFDQICNWRN 599
Query: 596 PLTTILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPD 655
P+TT+LIHILFIILV+YPELILPT+FLYLFLIG+W++RWRPRHPPHMDTRLSHA+++HPD
Sbjct: 600 PITTVLIHILFIILVMYPELILPTIFLYLFLIGVWHYRWRPRHPPHMDTRLSHADSSHPD 659
Query: 656 ELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTL 715
ELDEEFDTFPT++ +DIVRMRYDRLRSIAGR+QTV+GDLATQGER QSL+SWRDPRA+ L
Sbjct: 660 ELDEEFDTFPTSRPADIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRASAL 719
Query: 716 FVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
FV FCL++AIVLYVTPFQVVALL+GIYVLRHPRFR+KLPSVPLNFFRRLPAR+D ML
Sbjct: 720 FVIFCLVSAIVLYVTPFQVVALLSGIYVLRHPRFRYKLPSVPLNFFRRLPARTDCML 776
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509865|ref|XP_003625221.1| Anthranilate phosphoribosyltransferase-like protein [Medicago truncatula] gi|124360660|gb|ABN08649.1| C2 [Medicago truncatula] gi|355500236|gb|AES81439.1| Anthranilate phosphoribosyltransferase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1384 bits (3582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 657/778 (84%), Positives = 722/778 (92%), Gaps = 9/778 (1%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQ+ P DF LKET P +G G ++GDKL+ TYDLVEQMQYLYVRVVKAK+LP KDVTGS
Sbjct: 1 MQRPPPE-DFLLKETKPHLG-GKVSGDKLTSTYDLVEQMQYLYVRVVKAKELPSKDVTGS 58
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120
CDPYVEVKLGNYKGTT+HFEKK+NPEWNQ FAFSKDRIQASVLEV VKDKD V DD IGR
Sbjct: 59 CDPYVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQASVLEVFVKDKDFVKDDFIGR 118
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V FDLNE+PKR+PPDSPLAPQWYRLEDRK DKVK GELMLAVWMGTQADEAFP+AWHSDA
Sbjct: 119 VWFDLNEIPKRVPPDSPLAPQWYRLEDRKSDKVK-GELMLAVWMGTQADEAFPEAWHSDA 177
Query: 181 ATVSG-EGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTR 239
ATVSG + +ANIRSKVYLSPKLWY+RVN+IEAQDL PSDK RFPEV+VKAILGNQ RTR
Sbjct: 178 ATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRFPEVYVKAILGNQTLRTR 237
Query: 240 ISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK 299
IS S++INPMWNEDLMFVAAEPFEEPLIL+VEDRVAPNK+E+LGKC+IPLQ + RRLDHK
Sbjct: 238 ISQSRSINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEELLGKCVIPLQMMDRRLDHK 297
Query: 300 PVNTRWFNLEKHVIV--DGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQL 357
PVNTRWFN+EKHV++ +KKE KF+SRIH+R+CL+GGYHVLDESTHYSSDLRPTAKQL
Sbjct: 298 PVNTRWFNIEKHVVIMEGDKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQL 357
Query: 358 WKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQY 417
WK SIG+LE+G+L+A GL PMK+ +GRGTTDAYCVAKYGQKWVRTRTI+DSF PRWNEQY
Sbjct: 358 WKSSIGVLEVGILNASGLMPMKSNNGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQY 417
Query: 418 TWEVFDPCTVITVGVFDNGHIHGQG---GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474
TWEVFDPCTVIT+GVFDN H+H G GG +DS+IGKVRIRLSTLETDRVYTHSYPLLV
Sbjct: 418 TWEVFDPCTVITIGVFDNCHLHHGGDKPGGQRDSKIGKVRIRLSTLETDRVYTHSYPLLV 477
Query: 475 LHPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIV 534
LHP+GV+KMGE+QLAVRFTCSSL+NM+HMYS PLLPKMHYIHPL+V QLDSLRHQA QIV
Sbjct: 478 LHPTGVKKMGEIQLAVRFTCSSLLNMMHMYSNPLLPKMHYIHPLTVSQLDSLRHQATQIV 537
Query: 535 SIRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWK 594
S+RL+RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFRIMGVLS LI+VGKWFDQICNWK
Sbjct: 538 SMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWK 597
Query: 595 NPLTTILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHP 654
NP+TT+LIHILFIILV+YPELILPT+FLYLFLIG+W +RWRPRHPPHMDTRLSHA++AHP
Sbjct: 598 NPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHP 657
Query: 655 DELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATT 714
DELDEEFDTFPTT+ SDIVRMRYDRLRSIAGR+QTV+GDLATQGER QSL+SWRDPRAT
Sbjct: 658 DELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATA 717
Query: 715 LFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
LFV FCLIAAIVLYVTPFQVVALL+GIYVLRHPRFRHKLPSVPLNFFRRLPAR+D ML
Sbjct: 718 LFVLFCLIAAIVLYVTPFQVVALLSGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 772 | ||||||
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.997 | 0.996 | 0.811 | 0.0 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.996 | 1.0 | 0.821 | 0.0 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.997 | 0.992 | 0.785 | 0.0 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.992 | 0.757 | 0.651 | 3.9e-289 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.989 | 0.737 | 0.639 | 5.5e-283 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.997 | 0.748 | 0.628 | 9.1e-274 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.987 | 0.757 | 0.569 | 1.4e-247 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.970 | 0.740 | 0.575 | 7.2e-242 | |
| TAIR|locus:2119742 | 774 | AT4G20080 [Arabidopsis thalian | 0.975 | 0.972 | 0.560 | 5.4e-237 | |
| TAIR|locus:2098846 | 972 | AT3G61300 "AT3G61300" [Arabido | 0.972 | 0.772 | 0.538 | 5.7e-233 |
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3405 (1203.7 bits), Expect = 0., P = 0.
Identities = 629/775 (81%), Positives = 693/775 (89%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQ+ P DF+LKET P +G G ++GDKL+ TYDLVEQMQYLYVRVVKAK+LPGKD+TGS
Sbjct: 1 MQRPPPE-DFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGS 59
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXIGR 120
CDPYVEVKLGNYKGTT+HFEKKSNPEWNQ FAFSKDRIQAS IGR
Sbjct: 60 CDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGR 119
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V+FDLNEVPKR+PPDSPLAPQWYRLEDRKGDKVK GELMLAVW GTQADEAFP+AWHSDA
Sbjct: 120 VVFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVK-GELMLAVWFGTQADEAFPEAWHSDA 178
Query: 181 ATVSG-EGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTR 239
ATVSG + +ANIRSKVYLSPKLWY+RVN+IEAQDL+P+DK R+PEV+VKAI+GNQA RTR
Sbjct: 179 ATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTR 238
Query: 240 ISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK 299
+S S+TINPMWNEDLMFVAAEPFEEPLIL+VEDRVAPNKDEVLG+C IPLQ + RR DHK
Sbjct: 239 VSQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHK 298
Query: 300 PVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWK 359
PVN+RW+NLEKH++VDGEKKETKF+SRIH+RICL+GGYHVLDESTHYSSDLRPTAKQLWK
Sbjct: 299 PVNSRWYNLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWK 358
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTW 419
P+IG+LELG+L+A GL PMKTKDGRGTTDAYCVAKYGQKW+RTRTI+DSF PRWNEQYTW
Sbjct: 359 PNIGVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTW 418
Query: 420 EVFDPCTVITVGVFDN--XXXXXXXXXXKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 477
EVFDPCTV+TVGVFDN KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP
Sbjct: 419 EVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 478
Query: 478 SGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIR 537
+GV+KMGE+ LAVRFTCSSL+NM++MYSQPLLPKMHYIHPL+V QLD+LRHQA QIVS+R
Sbjct: 479 NGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMR 538
Query: 538 LNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPX 597
L RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFRIMGVLS LI+VGKWF+QICNWKNP
Sbjct: 539 LTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPI 598
Query: 598 XXXXXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDEL 657
YPELILPT+FLYLFLIGIW +RWRPRHPPHMDTRLSHA++AHPDEL
Sbjct: 599 TTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDEL 658
Query: 658 DEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFV 717
DEEFDTFPT++ SDIVRMRYDRLRSIAGR+QTV+GDLATQGER QSL+SWRDPRAT LFV
Sbjct: 659 DEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFV 718
Query: 718 TFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
FCLIAA++LYVTPFQVVAL GIY LRHPRFR+KLPSVPLNFFRRLPAR+D ML
Sbjct: 719 LFCLIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3399 (1201.6 bits), Expect = 0., P = 0.
Identities = 634/772 (82%), Positives = 683/772 (88%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQK Q IDFALKETSPKIGAGS+TGDKL TYDLVEQM YLYVRVVKAK+LPGKDVTGS
Sbjct: 1 MQKPGQNIDFALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGS 60
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXIGR 120
CDPYVEVKLGNY+G TKHFEK+SNPEW Q FAFSK+RIQAS IGR
Sbjct: 61 CDPYVEVKLGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGR 120
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
+MFDLNE+PKR+PPDSPLAPQWYRLEDR G KVK GELMLAVWMGTQADEAF DAWHSDA
Sbjct: 121 IMFDLNEIPKRVPPDSPLAPQWYRLEDRHGRKVK-GELMLAVWMGTQADEAFSDAWHSDA 179
Query: 181 ATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRI 240
ATV EGV +IRSKVYLSPKLWYVRVN+IEAQDL+P DK++FPEV+VKA+LGNQ RTRI
Sbjct: 180 ATVGPEGVTHIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRI 239
Query: 241 SPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKP 300
S +KT+NPMWNEDLMFV AEPFEE LIL VEDRVAPNKDE LG+C IPLQ VQRRLDH+P
Sbjct: 240 SQTKTLNPMWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRP 299
Query: 301 VNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKP 360
+N+RWFNLEKH++V+GE+KE KF+SRIHLRI L+GGYHVLDESTHYSSDLRPTAKQLWKP
Sbjct: 300 LNSRWFNLEKHIMVEGEQKEIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKP 359
Query: 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWE 420
SIG+LE+G++SAHGL PMK+KDG+GTTDAYCVAKYGQKW+RTRTIVDSF P+WNEQYTWE
Sbjct: 360 SIGLLEVGIISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWE 419
Query: 421 VFDPCTVITVGVFDNXXXXXXXXXXKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGV 480
VFD CTVIT G FDN KD RIGKVRIRLSTLE DR+YTHSYPLLV HPSG+
Sbjct: 420 VFDTCTVITFGAFDNGHIPGGSG--KDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGI 477
Query: 481 RKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIRLNR 540
+K GE+QLAVRFTC SLINMLHMYSQPLLPKMHYIHPLSV+QLDSLRHQAM IVS RLNR
Sbjct: 478 KKTGEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNR 537
Query: 541 AEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPXXXX 600
AEPPLRKE+VEYMLDVDSHMWSMRRSKANFFRIM VLS LI+VGKWFDQICNW+NP
Sbjct: 538 AEPPLRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTI 597
Query: 601 XXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDEE 660
YPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHA+A HPDELDEE
Sbjct: 598 LIHVLFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEE 657
Query: 661 FDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFVTFC 720
FDTFPT++ S+IVRMRYDRLRSI GRVQTVIGDLATQGERF SL+SWRDPRATTLFV FC
Sbjct: 658 FDTFPTSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFC 717
Query: 721 LIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
LIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLN FRRLPARSDS+L
Sbjct: 718 LIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3311 (1170.6 bits), Expect = 0., P = 0.
Identities = 611/778 (78%), Positives = 683/778 (87%)
Query: 1 MQKSPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
MQ+ P DF+LKET P +G G +TGDKL+ TYDLVEQMQYLYVRVVKAK+LPGKD+TGS
Sbjct: 1 MQRPPPE-DFSLKETKPHLGGGKVTGDKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTGS 59
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXIGR 120
CDPYVEVKLGNY+GTT+HFEKKSNPEWNQ FAFSKDR+QAS IGR
Sbjct: 60 CDPYVEVKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDLIGR 119
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V+FDLNE+PKR+PPDSPLAPQWYRLED KG KVK GELMLAVW GTQADEAFP+AWHSDA
Sbjct: 120 VVFDLNEIPKRVPPDSPLAPQWYRLEDGKGQKVK-GELMLAVWFGTQADEAFPEAWHSDA 178
Query: 181 ATVSG-EGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTR 239
ATVSG + +ANIRSKVYLSPKLWY+RVN+IEAQDL+PSDK R+PEVFVK I+GNQA RTR
Sbjct: 179 ATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKVIMGNQALRTR 238
Query: 240 ISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK 299
+S S++INPMWNEDLMFV AEPFEEPLIL+VEDRVAPNKDEVLG+C +PLQ + +R D++
Sbjct: 239 VSQSRSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDYR 298
Query: 300 PVNTRWFNLEKHVIVDG-EKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLW 358
PVN+RWFNLEKHVI++G EKKE KF+S+IH+RICL+GGYHVLDESTHYSSDLRPTAKQLW
Sbjct: 299 PVNSRWFNLEKHVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLW 358
Query: 359 KPSIGILELGVLSAHGLTPMKTKDG-RGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQY 417
KP+IG+LELGVL+A GL PMK K+G RGTTDAYCVAKYGQKW+RTRTI+DSF PRWNEQY
Sbjct: 359 KPNIGVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQY 418
Query: 418 TWEVFDPCTVITVGVFDN---XXXXXXXXXXKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474
TWEVFDPCTV+TVGVFDN KDSRIGKVRIRLSTLE DRVYTHSYPLLV
Sbjct: 419 TWEVFDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSYPLLV 478
Query: 475 LHPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIV 534
LHPSGV+KMGE+ LAVRFTCSSL+NM++MYS PLLPKMHY+HPL+V QLD+LRHQA QIV
Sbjct: 479 LHPSGVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIV 538
Query: 535 SIRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWK 594
S RL RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFRIMGVLS +I+VGKWF+QIC WK
Sbjct: 539 STRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQICVWK 598
Query: 595 NPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHP 654
NP YPELILPT+FLYLFLIG+W +RWRPRHPPHMDTRLSHA++AHP
Sbjct: 599 NPITTVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHP 658
Query: 655 DELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATT 714
DELDEEFDTFPT++ SDIVRMRYDRLRSIAGR+QTV+GDLATQGERFQSL+SWRDPRAT
Sbjct: 659 DELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERFQSLLSWRDPRATA 718
Query: 715 LFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
LFV FCLIAA++LY+TPFQVVA G+YVLRHPR R+KLPSVPLNFFRRLPAR+D ML
Sbjct: 719 LFVLFCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNFFRRLPARTDCML 776
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2777 (982.6 bits), Expect = 3.9e-289, P = 3.9e-289
Identities = 508/780 (65%), Positives = 627/780 (80%)
Query: 4 SPQAIDFALKETSPKIGAGSITG------DKLSC-TYDLVEQMQYLYVRVVKAKDLPGKD 56
S Q DFALKETSP +G G + G DK + TYDLVE+M +LYVRVVKA++LP D
Sbjct: 235 SAQPADFALKETSPHLGGGRVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMD 294
Query: 57 VTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXX 116
+TGS DP+VEV++GNYKG T+HFEK+ +PEWNQ FAF+K+R+QAS
Sbjct: 295 ITGSVDPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDD 354
Query: 117 XIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAW 176
+G V FD+N+VP R+PPDSPLAPQWYRLED+KG+K+K GELMLAVW+GTQADEAF DAW
Sbjct: 355 YVGFVRFDINDVPLRVPPDSPLAPQWYRLEDKKGEKIK-GELMLAVWIGTQADEAFSDAW 413
Query: 177 HSDAAT---VSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN 233
HSDAA S A +RSKVY +P+LWYVRVN+IEAQDL+P+DK+RFP+V+VKA LGN
Sbjct: 414 HSDAAMPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQLGN 473
Query: 234 QASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQ 293
Q +TR ++T+ +WNED +FV AEPFE+ L+LTVEDRVAP KDE++G+ IPL V+
Sbjct: 474 QVMKTRPCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVE 533
Query: 294 RRLDHKPVNTRWFNLEKHVIVDGEK-KETKFSSRIHLRICLDGGYHVLDESTHYSSDLRP 352
+R D ++ RW+NLE+ VIVD ++ K KFS RIHLR+CL+GGYHVLDESTHYSSDLRP
Sbjct: 534 KRADDHMIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSSDLRP 593
Query: 353 TAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPR 412
+A+ LW+ IG+LELG+L+A GL PMKT++GRGT+D +CV KYGQKWVRTRT+VD+ P+
Sbjct: 594 SARPLWRQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPK 653
Query: 413 WNEQYTWEVFDPCTVITVGVFDNXXXXXXXXXXKDSRIGKVRIRLSTLETDRVYTHSYPL 472
+NEQYTWEVFDP TV+TVGVFDN +D +IGK+RIRLSTLET R+YTHSYPL
Sbjct: 654 YNEQYTWEVFDPATVLTVGVFDNGQLGEKGN--RDVKIGKIRIRLSTLETGRIYTHSYPL 711
Query: 473 LVLHPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQ 532
LVLHP+GV+KMGE+ +AVRFTC S NML+ YS+PLLPKMHY+ P SV+Q D LRHQA+
Sbjct: 712 LVLHPTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVN 771
Query: 533 IVSIRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICN 592
IV+ RL RAEPPLRKE++E+M D DSH+WSMR+SKANFFR+M V S +I+VGKWF IC+
Sbjct: 772 IVAARLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICS 831
Query: 593 WKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAA 652
W+NP PELILPT+FLY+FLIG+WN+R+RPR+PPHM+T++S AEA
Sbjct: 832 WRNPITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAV 891
Query: 653 HPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRA 712
HPDELDEEFDTFPTT+ D+VR+RYDRLRS+AGR+QTVIGDLATQGERFQ+L+SWRDPRA
Sbjct: 892 HPDELDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRDPRA 951
Query: 713 TTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
T +FV C IAAIV ++TP Q+V LAG + +RHPRFRH+LPSVP+NFFRRLPAR+DSML
Sbjct: 952 TAIFVILCFIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTDSML 1011
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2719 (962.2 bits), Expect = 5.5e-283, P = 5.5e-283
Identities = 497/777 (63%), Positives = 617/777 (79%)
Query: 9 DFALKETSPKIGA---GSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYV 65
DF +K+ + +G G++ + TYDLVEQM YLYVRVVKAK+LP +TG CDPYV
Sbjct: 260 DFKVKDMNLDLGERWPNPNAGERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDPYV 319
Query: 66 EVKLGNYKGTTKHFEKKSN-PEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXI-GRVMF 123
EVKLGNYKG TK F++K+ PEWNQ FAF+K+RIQ+S I G+V+F
Sbjct: 320 EVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKERIQSSVLEVFVKDKETLGRDDILGKVVF 379
Query: 124 DLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWMGTQADEAFPDAWHSDAAT 182
DLNE+P R+PP+SPLAPQWYRLED +G+ KV GE+MLAVWMGTQADEAFP+AWH+D+A+
Sbjct: 380 DLNEIPTRVPPNSPLAPQWYRLEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADSAS 439
Query: 183 VSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISP 242
V GEGV NIRSKVY+SPKLWY+RVN+IEAQD++PSD++R P+VFVKA +G Q +T I
Sbjct: 440 VHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMIPSDRNRLPDVFVKASVGMQTLKTSICS 499
Query: 243 SKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVN 302
KT NP+W EDL+FV AEPFEE L+++VEDRV +KDEV+GK +P+ ++RLDH+PV+
Sbjct: 500 IKTTNPLWKEDLVFVVAEPFEEQLVISVEDRVHTSKDEVIGKITLPMNVFEKRLDHRPVH 559
Query: 303 TRWFNLEKH---VIV-DGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLW 358
+RWFNL+K+ V+ D +KE KFSSRIHLRICL+GGYHV+DEST Y SD RPTA+QLW
Sbjct: 560 SRWFNLDKYGTGVLEPDARRKEHKFSSRIHLRICLEGGYHVMDESTMYISDTRPTARQLW 619
Query: 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYT 418
K +G+LE+G+L A+GL PMK KDGRG+T+AYCVAKYGQKWVRTRTI+D+ PRWNEQYT
Sbjct: 620 KQPVGMLEIGILGANGLVPMKLKDGRGSTNAYCVAKYGQKWVRTRTILDTLSPRWNEQYT 679
Query: 419 WEVFDPCTVITVGVFDNX---XXXXXXXXXKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475
WEV+DPCTVIT+GVFDN +D+RIGKVRIRLSTLE ++YTHS+PLLVL
Sbjct: 680 WEVYDPCTVITLGVFDNSHLGSAQSGTADSRDARIGKVRIRLSTLEAHKIYTHSFPLLVL 739
Query: 476 HPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVS 535
P G++K G++Q++VRFT SL N+++ Y PLLPKMHY+ P +V Q+D LR+QAM IVS
Sbjct: 740 QPHGLKKTGDLQISVRFTTLSLANIIYNYGHPLLPKMHYLFPFTVNQVDGLRYQAMNIVS 799
Query: 536 IRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKN 595
RL RAEPPLRKEVVEYMLDVDSH+WSMRRSKANFFRIM +LS VGKW + +CNW+
Sbjct: 800 TRLGRAEPPLRKEVVEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVCNWRY 859
Query: 596 PXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPD 655
P YPELILPT+FLY+F IG+WNFR RPRHPPHMD +LS AEA PD
Sbjct: 860 PVTSVLVNVLFFILVMYPELILPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWAEAVGPD 919
Query: 656 ELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTL 715
ELDEEFDTFPT++ ++VR+RYDRLRS+AGR+QTV+GD+A QGER QSL+SWRDPRAT+L
Sbjct: 920 ELDEEFDTFPTSRSQELVRLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLSWRDPRATSL 979
Query: 716 FVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
F+ FCL A++VLY PF+ +AL +G+Y LRHP+FR KLPS+P NFF+RLP+ +DS+L
Sbjct: 980 FILFCLAASVVLYAMPFKAIALASGLYYLRHPKFRSKLPSLPSNFFKRLPSSTDSLL 1036
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2632 (931.6 bits), Expect = 9.1e-274, P = 9.1e-274
Identities = 495/787 (62%), Positives = 605/787 (76%)
Query: 1 MQKSP---QAIDFALKETSPKIGAGS-------ITGDKLSCTYDLVEQMQYLYVRVVKAK 50
MQ P Q +F L ETSP + A +GDK S TYDLVEQM YLYV VVKA+
Sbjct: 245 MQMQPPRQQNPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKAR 304
Query: 51 DLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASXXXXXXXXX 110
DLP DV+GS DPYVEVKLGNYKG TKH EK SNP W Q FAFSK+R+Q++
Sbjct: 305 DLPVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDK 364
Query: 111 XXXXXXX-IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQAD 169
+GRV DL EVP R+PPDSPLAPQWYRLED+KG K GE+MLAVWMGTQAD
Sbjct: 365 DLLTKDDFVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQAD 424
Query: 170 EAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKA 229
E+FPDAWHSDA VS ++N RSKVY SPKL+Y+R++++EAQDL+PSDK R P+ VK
Sbjct: 425 ESFPDAWHSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKI 484
Query: 230 ILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPL 289
GNQ TR +T+NP W+E+LMFV +EPFE+ +I++V+DR+ P KDE+LG+ IP+
Sbjct: 485 QAGNQMRATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPV 544
Query: 290 QAVQRRLD-HKPVNTRWFNLEKHVIV---DGEKKETKFSSRIHLRICLDGGYHVLDESTH 345
+ V R + K + RWFNL++H + + EK++ KFSS+I LR+C++ GYHVLDESTH
Sbjct: 545 RDVPVRQEVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTH 604
Query: 346 YSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTI 405
+SSDL+P++K L KPSIGILELG+LSA L PMK KDGR TD YCVAKYG KWVRTRT+
Sbjct: 605 FSSDLQPSSKHLRKPSIGILELGILSARNLMPMKGKDGR-MTDPYCVAKYGNKWVRTRTL 663
Query: 406 VDSFGPRWNEQYTWEVFDPCTVITVGVFDNXXXXXXXXXXKDSRIGKVRIRLSTLETDRV 465
+D+ P+WNEQYTWEV DPCTVIT+GVFDN KD RIGKVR+RLSTLETDRV
Sbjct: 664 LDALAPKWNEQYTWEVHDPCTVITIGVFDNSHVNDGGDF-KDQRIGKVRVRLSTLETDRV 722
Query: 466 YTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDS 525
YTH YPLLVL P G++K GE+QLA+R+TC+ +NM+ Y +PLLPKMHYI P+ V +D
Sbjct: 723 YTHFYPLLVLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDL 782
Query: 526 LRHQAMQIVSIRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGK 585
LRHQAMQIV+ RL+R+EPPLR+EVVEYMLDVD HM+S+RRSKANF RIM +LSS+ V K
Sbjct: 783 LRHQAMQIVATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCK 842
Query: 586 WFDQICNWKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTR 645
WF+ IC W+NP YPELILPTVFLYLF+IG+WN+R+RPRHPPHMD R
Sbjct: 843 WFNDICTWRNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDAR 902
Query: 646 LSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLI 705
+S A+ AHPDELDEEFDTFPT++ +DIVRMRYDRLRS+ GRVQTV+GDLATQGER Q+L+
Sbjct: 903 VSQADNAHPDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQALL 962
Query: 706 SWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLP 765
SWRDPRAT LF+ F LI A+ +YVTPFQV+A++ G+++LRHPRFR ++PSVP NFF+RLP
Sbjct: 963 SWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKRLP 1022
Query: 766 ARSDSML 772
A+SD +L
Sbjct: 1023 AKSDMLL 1029
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2385 (844.6 bits), Expect = 1.4e-247, P = 1.4e-247
Identities = 444/780 (56%), Positives = 584/780 (74%)
Query: 9 DFALKETSPKIGAGSITGDKL--------SCTYDLVEQMQYLYVRVVKAKDLPGKDVTGS 60
DF++KETSP +G G I G ++ S TYDLVE+M++LYVRVVKA+DLP KD+TGS
Sbjct: 229 DFSVKETSPLLGGGRIVGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPNKDLTGS 288
Query: 61 CDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXIGR 120
DPYV VK+GN+KG T HF K ++PEWNQ FAF+KD +Q++ +G
Sbjct: 289 LDPYVVVKIGNFKGVTTHFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDILLDDFVGI 348
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V FDL EV R+PPDSPLAPQWYRLE+++G+K K E+MLAVW GTQADEAF DA SD+
Sbjct: 349 VKFDLREVQSRVPPDSPLAPQWYRLENKRGEK-KNYEIMLAVWSGTQADEAFGDATFSDS 407
Query: 181 ATVSGEG---VANIRSKVYLSPKLWYVRVNIIEAQD-LLPSDKSRFPEVFVKAILGNQAS 236
S AN+RSKVY SP+LWY+RV I+EAQD ++ SDKSR PEVFV+ +GNQ
Sbjct: 408 LVDSDSSNIISANLRSKVYHSPRLWYLRVQILEAQDVIIVSDKSRVPEVFVRVKVGNQML 467
Query: 237 RTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRL 296
RT+ P ++ NP W ++ FV AEPFE+ L+L+VED APN+DE +GK +I + +++R+
Sbjct: 468 RTKF-PQRSNNPKWGDEFTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVILMNDIEKRI 526
Query: 297 DHKPVNTRWFNLEKHV--IVDGEK-KETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPT 353
D KP + RW +LE + +D +K K+ KF++R+ + LDGGYHV DES + SSDLRP+
Sbjct: 527 DDKPFHDRWVHLEDSISDAMDVDKAKKVKFATRLRYKAVLDGGYHVFDESMYNSSDLRPS 586
Query: 354 AKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRW 413
+++LWKP+IG+LELG+L+A+ MKT++G+GT+D Y VAKYG KWVR+RT+++S P++
Sbjct: 587 SRKLWKPAIGVLELGILNANVFHSMKTREGKGTSDTYVVAKYGHKWVRSRTVINSMNPKY 646
Query: 414 NEQYTWEVFDPCTVITVGVFDNXXXXXXXXXXK-DSRIGKVRIRLSTLETDRVYTHSYPL 472
NEQYTWEVFDP TV+T+ VFDN K D IGKVRIRLSTL+T RVYTH+YPL
Sbjct: 647 NEQYTWEVFDPATVLTICVFDNAHFAAGDGGNKRDQPIGKVRIRLSTLQTGRVYTHAYPL 706
Query: 473 LVLHPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQ 532
LVL P+G++K GE+ LAVRFTC+S+ +ML Y++PLLPKMHYI PLS Q ++L+ QA+
Sbjct: 707 LVLQPTGLKKRGELHLAVRFTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEALKMQAIN 766
Query: 533 IVSIRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICN 592
I+ +RL R+EPPLR+EVV+Y+ D S ++SMRRSKANF R V S +SV KW +Q+C
Sbjct: 767 IIIVRLGRSEPPLRREVVDYLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWKWMEQVCT 826
Query: 593 WKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAA 652
WK P +PE+ILPTVFLY+ +IG+WN+R++PR PPHMD +LS+A+
Sbjct: 827 WKTPVTTALVHVLYTMLVTFPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAKLSYADNV 886
Query: 653 HPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRA 712
+ DELDEEFDTFPT + DIV+MRYDRLRS+AG+VQ+V GD+A QGER Q+L+SWRDPRA
Sbjct: 887 NSDELDEEFDTFPTVRAPDIVKMRYDRLRSVAGKVQSVAGDIAAQGERVQALLSWRDPRA 946
Query: 713 TTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
T +FVTFC I A+ LY+TPF++VALL+G Y +RHP+ RH++PS P+NFFRRLPA +DSML
Sbjct: 947 TAIFVTFCFIIAMALYITPFKLVALLSGYYFMRHPKLRHRIPSAPVNFFRRLPAMTDSML 1006
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2331 (825.6 bits), Expect = 7.2e-242, P = 7.2e-242
Identities = 453/787 (57%), Positives = 567/787 (72%)
Query: 9 DFALKETSPKIGA-----GSITG--DKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSC 61
+F+LKET P +G G ++ DK S TYDLVEQMQYLYV +VKAKDL V G
Sbjct: 241 EFSLKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDL---SVLG-- 295
Query: 62 DPYVEVKLGNYKGTTKHFEKKS-NPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXIGR 120
+ EVKLGNY+G TK S NPEWNQ F FSK+RIQ+S GR
Sbjct: 296 EVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGNKDEYT--GR 353
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDA 180
V+FDL+E+P R+PPDSPLAPQWY++E+R G + GELM++VW GTQADEAF +AWHS A
Sbjct: 354 VLFDLSEIPTRVPPDSPLAPQWYKIENRNGGR-GNGELMVSVWFGTQADEAFAEAWHSKA 412
Query: 181 ATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKS----RFPEVFVKAILGNQAS 236
V E +++I+SKVYLSPKLWY+R+++IEAQD+ DK RFPE+ K +G+Q
Sbjct: 413 GNVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGSQIL 472
Query: 237 RTRIS---PSKTI-NPMWNEDLMFVAAEPFEEPLILTVEDR-----VAPNKDEVLGKCLI 287
RT I+ P+K+ NP WNEDLMFV AEPFE+ + + VEDR + D +G+ I
Sbjct: 473 RTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGRVQI 532
Query: 288 PLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYS 347
P+ AV+RR V +RWF+L D +F SRIHLR+ LDGGYHVLDE+T Y+
Sbjct: 533 PISAVERRTGDTLVGSRWFSL------DNGNNNNRFGSRIHLRLSLDGGYHVLDEATMYN 586
Query: 348 SDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGR--GTTDAYCVAKYGQKWVRTRTI 405
SD+RPTAK+LWKP +G+LE+G+LSA GL PMK +DG+ G D+YCVAKYG KWVRTRT+
Sbjct: 587 SDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVRTRTV 646
Query: 406 VDSFGPRWNEQYTWEVFDPCTVITVGVFDNXXXXXXXXXXKDSRIGKVRIRLSTLETDRV 465
VDS P+WNEQYTWEV+DPCTV+TVGVFDN +D RIGKVRIRLSTLET RV
Sbjct: 647 VDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNENNNS-RDVRIGKVRIRLSTLETGRV 705
Query: 466 YTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDS 525
YTHSYPL+VLHPSGV+K GE+ LAVR +C + +NMLHMY+ PLLPKMHY PL V L+
Sbjct: 706 YTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPLGVHMLER 765
Query: 526 LRHQAMQIVSIRLNRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGK 585
LR+Q + V+ RL+RAEPPL +EVVEYMLD D H+WSMRRSKANFFR++ V+S L++V K
Sbjct: 766 LRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVISGLVAVAK 825
Query: 586 WFDQICNWKNPXXXXXXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTR 645
+ + +W P +PEL+LP + LY +G+W FR R R+PPHMD R
Sbjct: 826 LVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSRYPPHMDAR 885
Query: 646 LSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLI 705
+SHAE PDELDEEFDTFPT++G D+VRMRYDR+RSIAGRVQTV+GD+A+QGER Q+L+
Sbjct: 886 ISHAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVVGDMASQGERVQALL 945
Query: 706 SWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLP 765
SWRDPRAT LF+ FCL+AA+ Y P ++ ++G+Y LR PRFR KLPS L+FFRRLP
Sbjct: 946 SWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRRKLPSRGLSFFRRLP 1005
Query: 766 ARSDSML 772
+R+DS+L
Sbjct: 1006 SRADSLL 1012
|
|
| TAIR|locus:2119742 AT4G20080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2285 (809.4 bits), Expect = 5.4e-237, P = 5.4e-237
Identities = 433/772 (56%), Positives = 563/772 (72%)
Query: 9 DFALKETSPKIGAGSITG-DKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEV 67
DF+LKETSP IG G + G +KL+ ++DLVE M +LY R+V+A+ LP D +V V
Sbjct: 14 DFSLKETSPNIGNGGVNGGEKLTSSFDLVEAMHFLYARIVRARALPVND------SFVAV 67
Query: 68 KLGNYKGTTKHF-EKKSNPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXI-GRVMFDL 125
K+G+YKG TK NPE+++ FAF+K R+Q I G+ FD+
Sbjct: 68 KIGSYKGRTKQILNSNPNPEFHETFAFTKTRLQGDILEVVVRNRDNPNEDDIVGKCKFDV 127
Query: 126 NEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSG 185
E+P R+PPDSPLAPQWYRLEDR G K+ GE+M++VW+GTQADE F +AWHSD+A+V+G
Sbjct: 128 AEIPTRVPPDSPLAPQWYRLEDRNGVKIG-GEIMVSVWIGTQADEVFSEAWHSDSASVTG 186
Query: 186 EGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRF-PEVFVKAILGNQASRTRISPSK 244
E V N RSKVYLSP+LWY+RVN+IEAQDL+ +R PE+ +K LGN R+RIS +K
Sbjct: 187 ENVVNTRSKVYLSPRLWYLRVNVIEAQDLVLLHPNRINPEILIKGFLGNVVVRSRISQTK 246
Query: 245 TINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTR 304
+++P+WNED+MFVA EPF++ LIL+VED+V P ++E LG+C I L V+RR+ PV +
Sbjct: 247 SVSPVWNEDMMFVAVEPFDDSLILSVEDKVGP-REECLGRCEIKLSQVERRVLPGPVPSL 305
Query: 305 WFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGI 364
W+N+E H+ GE + +F+ RIHLR+ LDGGYHVLDES YSSD R +AK LW P IG+
Sbjct: 306 WYNVE-HIGETGEGR--RFAGRIHLRVSLDGGYHVLDESIQYSSDYRASAKLLWTPPIGV 362
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP 424
LELGVL+A GL PMK++ GRGTTDAYCVAKYG KWVRTRTIVD+F P+WNEQYTWEV+DP
Sbjct: 363 LELGVLNATGLMPMKSRGGRGTTDAYCVAKYGTKWVRTRTIVDTFDPKWNEQYTWEVYDP 422
Query: 425 CTVITVGVFDNXXXXXXXXXXK---DSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR 481
TVIT+GVFDN + DSRIGK+RIRLSTL T ++YTHSYPL+VL P GV+
Sbjct: 423 YTVITIGVFDNLKLFGAGNENRLINDSRIGKIRIRLSTLVTSKIYTHSYPLMVLKPDGVK 482
Query: 482 KMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIRLNRA 541
KMGE+QLAVRFT +S+++ML Y++PLLP+MHYI PLS+ QLDSLRHQA I+ I L R
Sbjct: 483 KMGEIQLAVRFTATSMMDMLQKYTEPLLPEMHYISPLSIYQLDSLRHQATHILCINLGRN 542
Query: 542 EPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPXXXXX 601
EP L ++VVEYMLDV S++WS+RR +ANF R++ I KWFD+IC WK+P
Sbjct: 543 EPALGRDVVEYMLDVGSNIWSLRRGRANFERLVSFFDGWIDAWKWFDEICKWKSPVTSVL 602
Query: 602 XXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDEEF 661
P+ + ++ LY F+ G++ F RPRHPPHMD +LS A++A PDELDEEF
Sbjct: 603 VHIVCLFVVFLPKYCVFSMLLYCFVFGLYRFGLRPRHPPHMDIKLSKADSALPDELDEEF 662
Query: 662 DTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFVTFCL 721
D FP++K D+++ RYDRLR IAGR+ V+GDLATQGER +SL+SWRDPRAT+LF+TFC
Sbjct: 663 DVFPSSKSGDVLKRRYDRLRGIAGRMMIVLGDLATQGERVKSLLSWRDPRATSLFLTFCF 722
Query: 722 IAAIVLYVTPFQVVALLAGIYVLRHPRFR-HKLPSVPLNFFRRLPARSDSML 772
++ V+ +++ YV+RHPR R +PS+P NFFRRLP+R+DS+L
Sbjct: 723 VSCGVICFVSMKLLLTFLAFYVMRHPRVRVFDIPSIPQNFFRRLPSRADSIL 774
|
|
| TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2247 (796.0 bits), Expect = 5.7e-233, P = 5.7e-233
Identities = 417/775 (53%), Positives = 558/775 (72%)
Query: 4 SPQAIDFALKETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDP 63
+P D+++KET P +G G S +DLVE M++L++++VKA++LP D+TGS DP
Sbjct: 216 NPNPPDYSIKETKPILGGGKRAR---SSDHDLVEPMEFLFIKIVKARNLPSMDLTGSLDP 272
Query: 64 YVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXIGRVMF 123
Y+EVKLGNY G TKHFEK NP WN+ FAFSK Q++ +G + F
Sbjct: 273 YIEVKLGNYTGKTKHFEKNQNPVWNEVFAFSKSNQQSNVLEVIVMDKDMVKDDFVGLIRF 332
Query: 124 DLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATV 183
DLN++P R+ PDSPLAP+WYR+ + KG GE+MLAVW GTQADEAF DA +SDA
Sbjct: 333 DLNQIPTRVAPDSPLAPEWYRVNNEKG-----GEIMLAVWFGTQADEAFSDATYSDALNA 387
Query: 184 SGEGVANIRSKVYLSPKLWYVRVNIIEAQDL-LPSDKSRFPEVFVKAILGNQASRTRISP 242
+ +++RSKVY SP+LWY+RVN+IEAQDL + D++R P +VK L NQ RT+ P
Sbjct: 388 VNK--SSLRSKVYHSPRLWYLRVNVIEAQDLVIVPDRTRLPNPYVKIRLNNQVVRTK--P 443
Query: 243 SKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLD-HKPV 301
S ++NP WNE+ VAAEPFE+ LI+++EDRVAPN++E LG+ IP+ + +R+D ++ V
Sbjct: 444 SHSLNPRWNEEFTLVAAEPFED-LIISIEDRVAPNREETLGEVHIPIGTIDKRIDDNRTV 502
Query: 302 NTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLW--- 358
RWF+L+ + +++ ++R+HL +CL+GGYHVLDEST+YSSD RP+ K+L
Sbjct: 503 PNRWFSLK----TENQRRVRFATTRLHLNVCLEGGYHVLDESTYYSSDFRPSMKELLSHK 558
Query: 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYT 418
+PS G+LELG+L GL + + + T DAYCVAKYG KWVRTRT+ + PR+NEQYT
Sbjct: 559 QPSFGVLELGILRIEGLN-LSQEGKKETVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQYT 617
Query: 419 WEVFDPCTVITVGVFDNXXXXXXXXXXKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPS 478
WEV++P TVIT+GVFDN D +IGK+R+R+STLE R+Y+HSYPLLVL PS
Sbjct: 618 WEVYEPATVITIGVFDNNQINSGNGNKGDGKIGKIRVRISTLEAGRIYSHSYPLLVLRPS 677
Query: 479 GVRKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSIRL 538
G++KMGE+ LA+RF+CSS+ ML Y +PLLPKMHY PL V+Q + LR A+ +V+ RL
Sbjct: 678 GLKKMGELHLAIRFSCSSMFQMLMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVAARL 737
Query: 539 NRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPXX 598
+RAEPPLRKEVVEY+ D +SH+WSMR+S+AN FR+ V S L+ G+WF IC WK P
Sbjct: 738 SRAEPPLRKEVVEYISDSNSHLWSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKKPVE 797
Query: 599 XXXXXXXXXXXXXYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELD 658
PE+ILP + L LF++G+WN+R RPR PPHMDTRLS A+ HP+EL+
Sbjct: 798 TTAIHIIFLVLVCSPEMILPVMSLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIHPEELN 857
Query: 659 EEFDTFP-TTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFV 717
EEFDTFP +++ IV+MRY+RLRSIA R QTV+GD+A QGER Q+L+SWRDPRAT++F+
Sbjct: 858 EEFDTFPFSSQDPGIVKMRYERLRSIASRAQTVVGDIAGQGERVQALLSWRDPRATSIFM 917
Query: 718 TFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
CL++ +VLYV PF+V LLAG+Y++R PRFR K P P+NFFRRLPA++D ML
Sbjct: 918 VLCLVSTVVLYVVPFKVFVLLAGLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 772 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 1e-109 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 1e-87 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 2e-68 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 7e-67 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-22 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-21 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 6e-21 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-18 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 4e-17 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-16 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 8e-16 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-15 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-14 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 3e-14 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 1e-13 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-13 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 3e-13 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-13 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 5e-13 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 6e-13 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 2e-12 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 6e-12 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-11 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-11 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 1e-10 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-10 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 2e-10 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 2e-10 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 3e-10 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 8e-10 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-09 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-09 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-09 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 4e-09 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 4e-09 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-09 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 4e-09 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 6e-09 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 1e-08 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-08 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 1e-08 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 3e-08 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 3e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 4e-08 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 5e-08 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 7e-08 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 9e-08 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 1e-07 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 1e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-07 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-07 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 2e-07 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 3e-07 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 4e-07 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 4e-07 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 5e-07 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 6e-07 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 6e-07 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 6e-07 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 7e-07 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-06 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-06 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 1e-06 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-06 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-06 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 2e-06 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 2e-06 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 3e-06 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 3e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-06 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 4e-06 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 4e-06 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 4e-06 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 5e-06 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 7e-06 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-05 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-05 | |
| pfam06398 | 360 | pfam06398, Pex24p, Integral peroxisomal membrane p | 1e-05 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 2e-05 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 2e-05 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 2e-05 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 3e-05 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 3e-05 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 3e-05 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 4e-05 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 4e-05 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 4e-05 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 7e-05 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 1e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-04 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 1e-04 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 1e-04 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 2e-04 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 3e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 3e-04 | |
| cd08394 | 127 | cd08394, C2A_Munc13, C2 domain first repeat in Mun | 3e-04 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 3e-04 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-04 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 5e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 6e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 6e-04 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-04 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 7e-04 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 8e-04 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 9e-04 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 0.001 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.001 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.001 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 0.002 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 0.002 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 0.002 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 0.002 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 0.002 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 0.002 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 0.002 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 0.002 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.003 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 0.003 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-109
Identities = 125/156 (80%), Positives = 147/156 (94%)
Query: 617 LPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDEEFDTFPTTKGSDIVRMR 676
LPT+FLYLF+IG+WN+R+RPRHPPHMDTRLSHA+AAHPDELDEEFDTFPT++ D+VRMR
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60
Query: 677 YDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVA 736
YDRLRS+AGRVQTV+GD+ATQGER Q+L+SWRDPRAT +FV FCL+AA+VLYV PF+VVA
Sbjct: 61 YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120
Query: 737 LLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772
LLAG Y LRHPRFR ++PSVPLNFFRRLP+R+DSML
Sbjct: 121 LLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 1e-87
Identities = 103/150 (68%), Positives = 125/150 (83%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
Y+RV +IEAQDL+PSDK+R PEVFVKA LGNQ RTR S ++ NP WNE+LMFVAAEPF
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETK 322
E+ LIL+VEDRV PNKDE LG+ +IPL ++RR+D +PV +RWF+LE+ +KK+ K
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRK 120
Query: 323 FSSRIHLRICLDGGYHVLDESTHYSSDLRP 352
F+SRIHLR+CLDGGYHVLDESTHYSSDLRP
Sbjct: 121 FASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 2e-68
Identities = 88/126 (69%), Positives = 101/126 (80%)
Query: 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD 423
ILE+G+L A GL ++ KDGRG+TDAYCVAKYG KWVRTRT+ DS PRWNEQYTW V+D
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60
Query: 424 PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKM 483
PCTV+TVGVFDN H + D IGKVRIRLSTLE DRVY HSYPLL L+PSGV+KM
Sbjct: 61 PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKM 120
Query: 484 GEVQLA 489
GE++ A
Sbjct: 121 GELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 7e-67
Identities = 89/126 (70%), Positives = 98/126 (77%), Gaps = 5/126 (3%)
Query: 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQA 100
YLYVRVVKA+ LP S DP VEVKLGNYKG+TK E+ SNPEWNQ FAFSKDR+Q
Sbjct: 1 YLYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56
Query: 101 SVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELML 160
S LEV V DKD DD +G V FDL+EVP R+PPDSPLAPQWYRLED+KG +V GELML
Sbjct: 57 STLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRV-GGELML 115
Query: 161 AVWMGT 166
AVW GT
Sbjct: 116 AVWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 3e-22
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQA 100
L V V++A++LP KD+ G DPYV+V LG K TK + NP WN+ F F ++
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 101 SVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145
L V V DKD DD +G V L+E + W L
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSE----LLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-21
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG---TTKHFEKKSNPEWNQCFAFSKDRI 98
L V V+ AK+LP KD+ G DPYV+V LG K TK + NP WN+ F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 99 QASVLEVLVKDKDVVL-DDLIGRV 121
+ + L + V D D DD IG V
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 6e-21
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY---KGTTKHFEKKSNPEWNQCFAFSKDR 97
L V+++ A++LP KD G DPYV+V L K TK + NP WN+ F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 98 IQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPD 135
+ + LE+ V DKD DD IG+V L+++ +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 3e-18
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQAS---RTRISPSKTINPMWNEDLMFVAAE 260
+RV +I A++L P D + + +VK LG Q +T++ T+NP+WNE F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVK-NTLNPVWNETFTFEVTL 59
Query: 261 PFEEPLILTVEDRVAPNKDEVLGKC 285
P L + V D KD+ +G+
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-17
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSNPEWNQCFAFSKDRI 98
L VRV++A ++ D+ + D YVE+ L + K TK + NP WN+ F F
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 99 QASVLEVLVKDKDVVLDDLIGRVMFDLNEVP 129
+VLE+ V D+D V+DD +G V+FD++++
Sbjct: 62 VKNVLELTVMDEDYVMDDHLGTVLFDVSKLK 92
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-16
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQAS-RTRISPSKTINPMWNEDLMFVAAEPF 262
+RV +IEA++L D + + +VK LG + +T++ T+NP+WNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPE 59
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNL 308
+ L + V D+ +KD+ LG+ IPL + LD W L
Sbjct: 60 SDTLTVEVWDKDRFSKDDFLGEVEIPLSEL---LDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 8e-16
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQAS---RTRISPSKTINPMWNEDLMFVAA 259
+ V II A++L P DK + +VK L +T++ T+NP+WNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVP 59
Query: 260 EPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKP 300
P L + V D+ +D+ +G+ IPL + H+
Sbjct: 60 PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-15
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQA 100
+L V+V++A L D+ G DP+ ++L N + T K NPEWN+ F F I
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH- 60
Query: 101 SVLEVLVKDKDVVLD-DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149
VLEV V D+D + +G+V L + +WY L+D+K
Sbjct: 61 DVLEVTVYDEDKDKKPEFLGKVAIPLLSI-------KNGERKWYALKDKK 103
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-14
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWV---RTRTIVDSFGPRWNEQYTWEV 421
L + V+SA L P D G +D Y G + +T+ + ++ P WNE +T+EV
Sbjct: 1 LRVTVISAKNLPPK---DLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57
Query: 422 FDP-CTVITVGVFDNGHIHGQGGGGKDSRIGKVR 454
P + + V+D GKD IG+V
Sbjct: 58 TLPELAELRIEVYDYDRF------GKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 3e-14
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 42 LYVRVVKAKDLPGKDV--TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQ 99
L V VV+AKDL KD G DPY + +G + T+ NP+WN F Q
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 100 ASVLEVLVKDKD-VVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED--RKGDKVKTG 156
+L++++ DKD D +G L EV + + +W L+ V +G
Sbjct: 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQSDKWITLKSTRPGKTSVVSG 120
Query: 157 ELML 160
E+ L
Sbjct: 121 EIHL 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-13
Identities = 42/128 (32%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD---RI 98
L V VV A+DL KD GS YVE+ K T+ K NP WN+ F+ R+
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 99 QASVLEVLVKDK--DVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTG 156
VLEV V + +GRV P S Q Y LE R G
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISGTSF----VPPSEAVVQRYPLEKRGLFSRVRG 117
Query: 157 ELMLAVWM 164
E+ L V++
Sbjct: 118 EIGLKVYI 125
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 42 LYVRVVKAKDLPGKD------VTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSK 95
L + V++A+DL KD V G DPYV V++G +K ++ NP+WN+ +
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 96 DRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVK 154
D + LE+ + D+D DD +GR+ DL V K +W LED K ++
Sbjct: 63 DEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEK-----KGFIDEWLPLEDVKSGRLH 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-13
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 42 LYVRVVKAKDLPGKD-VTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQ---CFAFSKDR 97
L VRVV A+DLP D + D +VEVK G+ T +K NP WN F +
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60
Query: 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLN 126
+Q L++ V D D +D IG+V DLN
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYIDLN 90
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-13
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIVDSFGPRWNEQYTWEVFD 423
L + V+ A L D G +D Y G ++ +T+ + ++ P WNE + + V D
Sbjct: 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD 57
Query: 424 P-CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDR-VYTHSYPL 472
P +TV V+D + KD +G+V I LS L PL
Sbjct: 58 PESDTLTVEVWD------KDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-13
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 46 VVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEV 105
+V+ K+LP D G DPYV+ +LGN K +K K NP+W + F Q+ +LE+
Sbjct: 6 LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65
Query: 106 LVKDKDVVL-DDLIGRVMFDLNEVPK 130
V DKD D+ IGR DL+ +P+
Sbjct: 66 EVWDKDTGKKDEFIGRCEIDLSALPR 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 6e-13
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 44 VR--VVKAKDLPGKDVTGSCDPYVEVKLGNYK-GTTKHFEKKS-NPEWNQCFAFSKDRIQ 99
VR VV+A++L KD G DPY+++KLG K ++ + NP + + F
Sbjct: 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61
Query: 100 ASVLEVLVKDKDVV-LDDLIGRVMFDL 125
S+L++ V D D++ DDLIG + DL
Sbjct: 62 NSILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-12
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 30 SCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSNPE 86
S +YD Q L ++++KA +LP KD +G+ DP+V++ L +K TK K NP
Sbjct: 8 SVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPH 65
Query: 87 WNQCFAF---SKDRIQASVLEVLVKDKD-VVLDDLIGRVMFDLNEV 128
WN+ F F +++Q VL + V D D +D IG V LN+V
Sbjct: 66 WNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-12
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKK 82
++ YD V L V V++A+DLP +D +PYV+V L K TK +K
Sbjct: 6 QIQLWYDKVTSQ--LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKT 63
Query: 83 SNPEWNQCFAFS---KDRIQASVLEVLVKDKD-VVLDDLIGRVMFDLNEVPKRIPPDSPL 138
NPEWNQ F +S ++ ++ LEV V D D +D +G V+ DL D+ L
Sbjct: 64 LNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--------DALL 115
Query: 139 --APQWYRLE 146
P WY L+
Sbjct: 116 DDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQAS 101
L V++A+DL KD G+ DP+V V T +K P WN+ F F S
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 102 VLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145
L V V D D+V +D +G+V+F + + + + W+RL
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEG-----WFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-11
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIVDSFGPRWNEQYTWE 420
L + ++SA L P D G +D Y + +T+ + ++ P WNE + +E
Sbjct: 1 TLTVKIISARNLPPK---DKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57
Query: 421 VFDPCT-VITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET 462
V P + + V+D G+D IG+V I LS L
Sbjct: 58 VPPPELAELEIEVYDK------DRFGRDDFIGQVTIPLSDLLL 94
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 38/107 (35%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSN 84
KL + D Q L V +++A DLP D+ G+ DPYV+V L K TK K N
Sbjct: 4 KLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 63
Query: 85 PEWNQCFAFS--KDRIQASVLEVLVKDKDVVLD-DLIGRVMFDLNEV 128
P +N+ F F + L V D D DLIG V L V
Sbjct: 64 PVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 20/124 (16%)
Query: 200 KLWYVR------VNIIEAQDLLPSDKSRFPEVFVKAILGNQAS-----RTRISPSKTINP 248
+LWY + V +++A+DL P D +VK L S RT+ KT+NP
Sbjct: 8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNP 66
Query: 249 MWNEDLMF--VAAEPFEEPLI-LTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRW 305
WN+ + V E +E + +TV D +++ LG+ +I L LD +P W
Sbjct: 67 EWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--DALLDDEP---HW 121
Query: 306 FNLE 309
+ L+
Sbjct: 122 YPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNYKGT---TKHFEKKSNPEWNQCFAF--- 93
L+ +++AK L D G DPYV++ L G K T TK K NPE+N+ +
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 94 SKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEV 128
+++ IQ L +LV D+D +D +G L ++
Sbjct: 77 TEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKL 111
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-10
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 24/135 (17%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAF----SKDR 97
+ + VV A+ L KD TG+ DPYV V++G K TK + NP WN+ F F S DR
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62
Query: 98 IQASVLEVLVKDKDVV----------LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147
I+ V + +D D+ DD +G+ + ++ + S WY LE
Sbjct: 63 IKVRVWD---EDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-------SGEMDVWYNLEK 112
Query: 148 RKGDKVKTGELMLAV 162
R +G + L +
Sbjct: 113 RTDKSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 23/123 (18%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKS--------NPEWNQCFAF 93
+ V ++KA++L D+ G+ DPYV+V L YK K EKK NP +N+ F F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWL-MYKD--KRVEKKKTVIKKRTLNPVFNESFIF 73
Query: 94 S--KDRIQASVLEVLVKDKD-VVLDDLIGRVMFDLNEVPKRIP--------PDSPLAPQW 142
+ +R++ + L + V DKD + +DLIG++ + P P+A QW
Sbjct: 74 NIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVA-QW 132
Query: 143 YRL 145
+RL
Sbjct: 133 HRL 135
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 8e-10
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 21/122 (17%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEV-------KLGNYKGTTKHFEKKSNPEWNQCFAF- 93
L V V+KA++LP D G DPYV+V KL K + K NP +N+ F+F
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK--GTLNPVFNEAFSFD 73
Query: 94 -SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPK--------RIPPDSPLAPQWY 143
++++ L + V DKD V +++IG+V+ + + P P+A +W+
Sbjct: 74 VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIA-RWH 132
Query: 144 RL 145
+L
Sbjct: 133 KL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 369 VLSAHGLTPMKTKDGRGTTDAYCVAKY-GQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTV 427
V+ A L P KDG+G++ AY + GQK RTRT P WNE+ + V DP +
Sbjct: 6 VVDAQDLMP---KDGQGSSSAYVELDFDGQK-KRTRTKPKDLNPVWNEKLVFNVSDP-SR 60
Query: 428 ITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL--ETDRVYTHSYPL 472
++ V + + + G + S +G+VRI ++ ++ V YPL
Sbjct: 61 LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQR-YPL 106
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNE--DL-MFVAAE 260
V + ++E ++L P D + + +VK LGN+ ++++ SKT+NP W E DL +F
Sbjct: 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVC-SKTLNPQWLEQFDLHLFDDQ- 59
Query: 261 PFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK 299
+ L + V D+ KDE +G+C I L A+ R H
Sbjct: 60 --SQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHS 96
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQ-- 99
L VRVV+ +L +D T S DPYV + LGN K T+ +K NP WN+ S +
Sbjct: 4 LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLS---VPNP 59
Query: 100 ASVLEVLVKDKDVV-LDDLIGRVMFDL 125
+ L++ V DKD DD +G DL
Sbjct: 60 MAPLKLEVFDKDTFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-09
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 18/116 (15%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASR-----TRISPSKTINPMWNEDLMF-VAA 259
V +++A++L PSD + +VK L + T + T+NP++NE F V A
Sbjct: 18 VVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPA 76
Query: 260 EPFEE-PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH---------KPVNTRW 305
E EE L++TV D+ + ++EV+G+ ++ + L+H KP+ RW
Sbjct: 77 EQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPI-ARW 131
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-09
Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 29/140 (20%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT----TKHFEKKSNPEWNQCFAF---- 93
L VRV++ +DL K G+CDP+ V L T TK +K +NP +++ F F
Sbjct: 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 94 ----SKDRIQ-----ASVLEVLVKDKD---VVLDDLIGRVMFDLNEVPKRIPPDSPLAPQ 141
K + E+ V+ V DD +G V L + + +
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA----- 114
Query: 142 WYRL---EDRKGDKVKTGEL 158
WY L E G L
Sbjct: 115 WYFLQPREAPGTRSSNDGSL 134
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 4e-09
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-------GNYKGTTKHFEKKSNPEWNQCFA 92
Q L V ++ A++L D GS DP+V+V+L T+ +K P +++ F
Sbjct: 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75
Query: 93 FS----KDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQ 141
F+ + ++ ++L VKD D++ +D G LN++P S
Sbjct: 76 FNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFG 129
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-09
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 20 GAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNYKGTTK 77
G I +L+ Y Q Q L V V K ++LP D + DPYV + L K T +
Sbjct: 1 PLGRI---QLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR 55
Query: 78 --HFEKKS-NPEWNQCFAF--SKDRIQASVLEVLVKDKDVVLD---DLIGRVMFDLNEVP 129
+K + NP +++ F F S + ++ L+V VK+ L L+G+V+ DL+++
Sbjct: 56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL- 114
Query: 130 KRIPPDSPLAPQWYRLE 146
S QWY L
Sbjct: 115 ----DLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-09
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRI 98
L + + + ++L +D G+ DPYV+ K G YK T + K NP W++ F + +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY--KNLNPVWDEKFTLPIEDV 59
Query: 99 QASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGE 157
+ + V D D L DD +G DL+ + P + L +LED D+ G
Sbjct: 60 TQPLY-IKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKL-----KLEDPNSDE-DLGY 112
Query: 158 LMLAV 162
+ L V
Sbjct: 113 ISLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 12/89 (13%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKS-------NPEWNQCFAFS 94
L V V+KA+ LP DV+G DPYV+V L Y G + +KK+ NP +N+ F F
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNL--YYGKKRISKKKTHVKKCTLNPVFNESFVFD 74
Query: 95 --KDRIQASVLEVLVKDKD-VVLDDLIGR 120
+ ++ +E LV D D V +++IGR
Sbjct: 75 IPSEELEDISVEFLVLDSDRVTKNEVIGR 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-08
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 17/135 (12%)
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWV--RTRTIVDSFGPRWNEQYTW 419
IG+L + + SA GL G T D Y + RT+ D+ P WNE
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGG--TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYI 58
Query: 420 EVFDPCTVITVGVFD-NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTH-SYPLLVLHP 477
V + + V+D N KD IG LS+L + + + LL
Sbjct: 59 LVNSLTEPLNLTVYDFNDKR-------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---- 107
Query: 478 SGVRKMGEVQLAVRF 492
+ +GE+ +RF
Sbjct: 108 RNGKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-08
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRI 98
L V V+ A++LP D G DP+V+ L +K TK +K NP WN+ F
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFK--TKTIKKTLNPVWNESFEVPVPSR 58
Query: 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128
+VL+V V D D DDL+G DL+++
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 202 WYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMF----- 256
+ +R I +A+DLL +DKS + F + NQ+ T + T++P W++ L+F
Sbjct: 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVEL 59
Query: 257 ------VAAEPFEEPLI---LTVEDRVAPNKDEVLGKCLI-PLQAVQRRLDHKPVNTRWF 306
+A P PL+ L +D V KDE LG+ + PL + D P +WF
Sbjct: 60 YGSPEEIAQNP---PLVVVELFDQDSV--GKDEFLGRSVAKPLVKLDLEEDFPPK-LQWF 113
Query: 307 NLEKHVIVDGE 317
+ K GE
Sbjct: 114 PIYKGGQSAGE 124
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT-------TKHFEKKSNPEWNQCFAFS 94
L V+V+ DL KD+ G+ DPYV++ L + G TK +K NP+WN+ F F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 95 KDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIP-PDSPLAPQWYRLEDR--KGD 151
+ + +L + + + DD +G+V LN +P P + + Y L R K
Sbjct: 62 VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS- 120
Query: 152 KVKTGELML 160
+VK G L L
Sbjct: 121 RVK-GHLRL 128
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 381 KDGRGTTDAYCVAKYGQKWV-RTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIH 439
+D GT+D Y KYG K V +++TI + P W+E++T + D + + VFD
Sbjct: 15 RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDR-- 72
Query: 440 GQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493
G D +G + LSTLE ++ L P+ +G + L V T
Sbjct: 73 ----GLTDDFMGSAFVDLSTLELNKPTEVKLKL--EDPNSDEDLGYISLVVTLT 120
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-08
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFE 263
+R +++EA+DL P D++ + FV+ Q T + K+ P WNE F E +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVV-KKSCYPRWNEVFEFELMEGAD 60
Query: 264 EPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKF 323
PL + V D +K++ LGK + +Q L WF L + E
Sbjct: 61 SPLSVEVWDWDLVSKNDFLGKVVFSIQ----TLQQAKQEEGWFRLLPDPRAEEESGGNLG 116
Query: 324 SSRIHLR 330
S R+ +R
Sbjct: 117 SLRLKVR 123
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-08
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTK-HFEKKSNPEWNQCFAFSKDRIQ 99
L V V+KA++LP K DPY +++G TK F +PEW++ F +
Sbjct: 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK 61
Query: 100 ASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145
+L+V V D D DLIG DL+ K D WY L
Sbjct: 62 KPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFD-----DWYEL 102
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-08
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 33 YDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKL----GNYKGTTKHFEKKSNPEW 87
YDL E+ L V ++KA++LP + CDP+V+V L +K K NP +
Sbjct: 9 YDLEEE--QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSL-QSKVKRKTQNPNF 65
Query: 88 NQCFAF--SKDRIQASVLEVLVKDKD-VVLDDLIGRVMFDLNEV 128
++ F F S +Q L + V D D +IG V+F L ++
Sbjct: 66 DETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDL 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKS-NPEWNQCFAFS----- 94
YL V V++A+DL D + +V+ +LGN T+ + ++ NP WN+ F
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 95 KDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147
+D + SV + + +KD +GR + LN++ +R+ D P+ +W+ LE
Sbjct: 61 EDHLILSVEDRVGPNKDEP----LGRAVIPLNDIERRV-DDRPVPSRWFSLER 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 38/133 (28%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPY------VEVKLGNYKGTTKHFEKKS------------ 83
L V V++AK L KDV G DPY + N + + K +
Sbjct: 30 LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89
Query: 84 -----------NPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRI 132
NP WN+ F F + + L + + D D DD +G V L ++P
Sbjct: 90 IKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP--- 143
Query: 133 PPDSPLAPQWYRL 145
S W++L
Sbjct: 144 ---SCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEP 265
V +++AQDL+P D +V+ Q RTR P K +NP+WNE L+F ++P
Sbjct: 4 VEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDP-SRL 61
Query: 266 LILTVE-----DRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEK 310
L +E DR + + LG+ I + + + + LEK
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVV---QRYPLEK 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 204 VRVNIIEAQDLLPSD-KSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
++V ++ +L D S P V + LGNQ +TR+ K +NP+WNE+L P
Sbjct: 4 LKVRVVRGTNLAVRDFTSSDPYVVLT--LGNQKVKTRVI-KKNLNPVWNEELTLSVPNP- 59
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAV 292
PL L V D+ +KD+ +G+ I L+ +
Sbjct: 60 MAPLKLEVFDKDTFSKDDSMGEAEIDLEPL 89
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAF--- 93
L V V +AK+L D G DPYV++KL K TK +K NP WN+ F F
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 94 SKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149
D+ + +EV D+ +D +G + F ++E+ K WY+L +++
Sbjct: 75 PADKDRRLSIEVWDWDR-TTRNDFMGSLSFGVSELIKMP------VDGWYKLLNQE 123
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-07
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTI----NPMWNEDLMFVAAEP 261
+ I+ A++L + + +V L + + RI+ ++TI NP W+E+ F P
Sbjct: 5 IRIVRAENLKADSSNGLSDPYV--TLVDTNGKRRIAKTRTIYDTLNPRWDEE--FELEVP 60
Query: 262 FEEPLIL--TVEDRVAPNKDEVLGKCLIPL 289
EPL + TV DR K ++ G+ + L
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKL 90
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-07
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAF------- 93
Y+Y +A+DL D +G DP+ V N T+ ++ +P W+Q F
Sbjct: 6 YIY----QARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYG 61
Query: 94 SKDRIQAS----VLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIP-PDSPLAPQWYRLED 147
S + I + V+E+ D+D V D+ +GR + + K D P QW+ +
Sbjct: 62 SPEEIAQNPPLVVVELF--DQDSVGKDEFLGRSVAK--PLVKLDLEEDFPPKLQWFPI-- 115
Query: 148 RKGDKVKTGELMLAV 162
KG + GEL+ A
Sbjct: 116 YKGGQS-AGELLAAF 129
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFE 263
+ V I+E +DL P + + + + + +G+Q +T++ T+NP WN + F + +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD-TLNPKWNSSMQFFVKDLEQ 75
Query: 264 EPLILTVEDRVAPNKDEVLGKCLIPLQAVQR 294
+ L +TV DR + D+ LG+ I + + +
Sbjct: 76 DVLCITVFDRDFFSPDDFLGRTEIRVADILK 106
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 385 GTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFD 434
++D Y V G + V+TR I + P WNE+ T V +P + + VFD
Sbjct: 20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFD 69
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-07
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 41 YLY-VRVVKAKDLPGKDVTGSCDPYVEVKLGNYK---GTTKHFEKKSNPEWNQCFAFSKD 96
+L+ +R+V+A++L G DPYV + N K T+ NP W++ F
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 97 RIQASVLEVLVKDKDVVLD-DLIGRVMFDLNEVPKR 131
+ + V D+ V DL GR L+ PKR
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKLD--PKR 94
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-07
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 34 DLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG-TTKHFEKKSNPEWNQCFA 92
++VE YL + + ++LP D G DP+V++ L TK +K NP WN+ F
Sbjct: 1034 EMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFT 1093
Query: 93 FSKDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKR------IPPDSP-------- 137
VL + V D D +DL+G DL+++ IP D
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGT 1153
Query: 138 LAPQWYRLEDRKGDKVK 154
L P + + +
Sbjct: 1154 LHPGFNFRSKYALNVSR 1170
|
Length = 1227 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-07
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 22/132 (16%)
Query: 44 VRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWN-QC-FAFSK---DRI 98
V V++A+ L K +G+ D YV ++LG K +T EK ++P W +C F
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEV------PKRIPPDSPLAPQWYRLEDRKGD 151
+ L++ V ++++ LD +G+V LN++ + +W++LE + G
Sbjct: 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRT---------RWFKLESKPGK 113
Query: 152 KVKT-GELMLAV 162
K GE+ + +
Sbjct: 114 DDKERGEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-07
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 29 LSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKH---FEKKSNP 85
S YD + M L V++++A++L +D +G+ DPY +V+L + TK +K NP
Sbjct: 7 FSLEYD--KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNP 64
Query: 86 EWNQCFAF--SKDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128
E+++ F F + LEVL+ D D D+ IG V L EV
Sbjct: 65 EFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 363 GILELGVLSAHGLTPMKTKD------GRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQ 416
G+L + V+ A L KD +G +D Y + + G + +++ I ++ P+WNE
Sbjct: 1 GVLRIHVIEAQDL---VAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57
Query: 417 YTWEVF---DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
Y E P + + +FD KD +G++ I L ++E PL
Sbjct: 58 Y--EAVVDEVPGQELEIELFDE-------DPDKDDFLGRLSIDLGSVEKKGFIDEWLPL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWN-QCFAFSKDRIQA 100
L V +V+ +DL + G DPY EV +G+ + TK NP+WN F KD ++
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKD-LEQ 75
Query: 101 SVLEVLVKDKDVVL-DDLIGR 120
VL + V D+D DD +GR
Sbjct: 76 DVLCITVFDRDFFSPDDFLGR 96
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQA 100
LY+R+V+ K+LP KD+TGS DPY VK+ N T K NP W + +
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61
Query: 101 SVLEVLVKDKDVV-LDDLIGRV 121
+V V D+D + DD+IG+V
Sbjct: 62 TV-SFYVLDEDTLSRDDVIGKV 82
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 44 VRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAF-SKDRIQASV 102
V V A+ L +D G DPYV +K + + +PE++ F K
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66
Query: 103 LEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKT 155
++V + +++ D+ +G+ P+ + L R D
Sbjct: 67 IQVW--NSNLLCDEFLGQATLS-------ADPNDSQTLRTLPLRKRGRDAAGE 110
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
+++V +I A L +D + F L N +T + KT+NP WN+ F +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTH-TIYKTLNPEWNKIFTF-PIKDI 59
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNL 308
+ L +TV D K E LGK IPL L K +W+ L
Sbjct: 60 HDVLEVTVYDEDKDKKPEFLGKVAIPL------LSIKNGERKWYAL 99
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMF-----VA 258
V+V +++A+ LL KS + +V LG + T + KT +P+W E+ F ++
Sbjct: 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVK-EKTTSPVWKEECSFELPGLLS 59
Query: 259 AEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
L LTV R D+ LG+ IPL + + TRWF LE
Sbjct: 60 GNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRR--RTRWFKLE 108
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 30/110 (27%)
Query: 42 LYVRVVKAKDLP--------------GKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEW 87
++ +A+DLP + DPYVEV K T + NPEW
Sbjct: 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEW 61
Query: 88 NQCFAFS--------KDRIQASVLEVLVKDKD-VVLDDLIGRVMFDLNEV 128
N+ F + +IQ ++D D V DD+IG DL+++
Sbjct: 62 NEQIVFPEMFPPLCERIKIQ-------IRDWDRVGNDDVIGTHFIDLSKI 104
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-06
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQAS 101
L+V + AK+LP T PYVE+ +G +K E+ +NP W + F F +
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQ 61
Query: 102 VLEVLVKDKD 111
LE+ VKD
Sbjct: 62 ELEIEVKDDK 71
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 44 VRVVKAKDLPGKDVTGSC--DPYVEVKL-GNYKGTTK-HFEKKSNPEWNQCFAFSKD--- 96
+ ++ A+DL K+V Y V + ++K +T + +NP WN+ F D
Sbjct: 4 ITIISAEDL--KNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 97 -RIQASVLEVLVKDKDVVLDD-LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK 152
+ L + V + L D LIG V L ++ P L Y+L G
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 205 RVNIIEAQDLLPSDKSRF--PEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
RV+++EA+DL D+S + + +G Q +T+ P T+NP WN F
Sbjct: 4 RVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSAQ 62
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETK 322
+ L L + D+ + LG+ I L+ V + +W L+ K +
Sbjct: 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEV-FADGKTGQSDKWITLKS----TRPGKTSV 117
Query: 323 FSSRIHLR 330
S IHL+
Sbjct: 118 VSGEIHLQ 125
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKS-------NPEWNQCFAF- 93
L V +++AK+L DV G DPYV++ L + + +KK+ NP +N+ F+F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHL--MQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 94 -SKDRIQASVLEVLVKDKDVV-LDDLIGRV 121
++IQ L V V D D + +D IG+V
Sbjct: 75 VPFEQIQKVHLIVTVLDYDRIGKNDPIGKV 104
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSK-TINPMWNEDLMFVAAEP 261
V II +L D + + + FVK L + S+ + K T+NP +NE+ +
Sbjct: 17 VGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76
Query: 262 --FEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH-----KPVN---TRWFNL 308
++ L +TV D+ ++ +G + + A RL H K + W L
Sbjct: 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN--YKGTTKHFEKKSNPEWNQCFAFSKDRIQ 99
L V ++ AK L D G DPYV ++ K NPEWN+ F F+ +
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK-GDGRNPEWNEKFKFTVEYPG 61
Query: 100 ASV---LEVLVKDKDVV-LDDLIGRVMFDLNEV--PKRIPPDSPLAPQWYRLEDRKGDKV 153
L + + DKD DD IG L + P + L P Y + D
Sbjct: 62 WGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYNVVL--EDDT 119
Query: 154 KTGEL 158
GE+
Sbjct: 120 YKGEI 124
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-06
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 211 AQDLLPSDKSRF-PEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILT 269
A++L P KS P +V+ +G ++++ +T NP+W E F+ P + L +
Sbjct: 9 AKNL-PLAKSTKEPSPYVELTVGKTTQKSKVK-ERTNNPVWEEGFTFLVRNPENQELEIE 66
Query: 270 VEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNT--RWFNLEK 310
V+D + LG +PL L +P T + F L+
Sbjct: 67 VKDD---KTGKSLGSLTLPL----SELLKEPDLTLDQPFPLDN 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-06
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP 424
+ + V+ A GL KD GT+D Y + G+ RT+TI + P WNE++ +E +
Sbjct: 3 ISITVVCAQGLI---AKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 425 CTVITVGVFD 434
I V V+D
Sbjct: 60 SDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVF 422
G L++ V+ A GL D G +D +CV + ++T TI + P WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGL---AAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 423 DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRL 457
D V+ V V+D + K +GKV I L
Sbjct: 58 DIHDVLEVTVYD------EDKDKKPEFLGKVAIPL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 20/116 (17%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEV------FVKAILGNQASRTRISPSKTINPMWNEDLMFV 257
+R+++IEAQDL+ DK V +V +G Q ++++ +NP WNE ++
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKE-NLNPKWNE--VYE 59
Query: 258 AAEPFEEPLILTVE----DRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
A L +E D P+KD+ LG+ I L +V++ K W LE
Sbjct: 60 AVVDEVPGQELEIELFDED---PDKDDFLGRLSIDLGSVEK----KGFIDEWLPLE 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|219008 pfam06398, Pex24p, Integral peroxisomal membrane peroxin | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 32/175 (18%)
Query: 590 ICNWKNPL--TTILIHILFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHM--DTR 645
I W NP + L+ FI LV Y L+ + LF I + + WR P +
Sbjct: 35 ILTWTNPDYTLSFLLVYTFICLVPYLLLVSLPLGPLLFGIMVPGYLWRHSPLPRSSLISS 94
Query: 646 LSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGR------VQTVIGDL---AT 696
+ A LDE + +IV LR + + +
Sbjct: 95 DLNPTPAEGPTLDEA-------ESMEIVLN----LRDLQNKMTLLLSPIDFLEKFLYPFF 143
Query: 697 QGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLR-HPRFR 750
+ E +L+ TL +T I + L + P++++ L+ G ++L HP +
Sbjct: 144 KDEDLSTLLF------LTLLLTPIYI-FLTLPLIPWRLILLILGAFLLTYHPSWS 191
|
Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p. Length = 360 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
Y+ V +++A+ L P++ + + V+ LGN T+ +T NP WN+ F
Sbjct: 1 YLYVRVVKARGL-PANSN---DPVVEVKLGNYKGSTKAIE-RTSNPEWNQVFAFSKDRLQ 55
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRL--DHKPVNTRWFNLE 309
L ++V D+ KD+ LG L V R+ D P+ +W+ LE
Sbjct: 56 GSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPD-SPLAPQWYRLE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAF-SKDRIQA 100
L V V++A L G D S D YV+V G + T+ +NP WN F F S +
Sbjct: 30 LTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPG 88
Query: 101 SVLEVLVKDKDVVL-DDLIGR 120
L V D+D DDL+G
Sbjct: 89 GKLRFEVWDRDNGWDDDLLGT 109
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 32/99 (32%), Positives = 40/99 (40%), Gaps = 23/99 (23%)
Query: 62 DPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRI----QASVLEVLVKDKDVVLDD 116
DPY V L + T+ E NP WN+ F I AS +E VKD DVV
Sbjct: 59 DPYATVDLAGARVARTRVIENSENPVWNESF-----HIYCAHYASHVEFTVKDNDVVGAQ 113
Query: 117 LIGRVMFDLNEVPKRIPPDSPLAPQ----WYRLEDRKGD 151
LIGR IP + L+ + W + D G
Sbjct: 114 LIGRA---------YIPVEDLLSGEPVEGWLPILDSNGK 143
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 12/48 (25%), Positives = 17/48 (35%)
Query: 650 EAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQ 697
EA PD L + +T D V L S+ +G+L
Sbjct: 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 369 VLSAHGLTPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIVDSFGPRWNEQYTWEVF-DPCT 426
++ L PM D G +D Y + G +K+ +++ + P+W EQ+ +F D
Sbjct: 6 LVEGKNLPPM---DDNGLSDPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDLHLFDDQSQ 61
Query: 427 VITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
++ + V+D + G KD IG+ I LS L ++ ++ L
Sbjct: 62 ILEIEVWD------KDTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 44 VRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAF----SKDRIQ 99
VRV++A+ L G G+ DP V+V++G K T + + P +N+ F F S D +
Sbjct: 8 VRVIEARQLVG----GNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63
Query: 100 ASVLEVLVKDKDVVL-DDLIGRVMFDL 125
++++ V D + D LIG D+
Sbjct: 64 DKIIKISVYDSRSLRSDTLIGSFKLDV 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQC 90
Q + L V +++ +L D G DP+V++ L K T+ +K NPE+N+
Sbjct: 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEE 68
Query: 91 FAF--SKDRIQASVLEVLVKDKDV-VLDDLIGRVMFDLN 126
F + + LE+ V DKD+ +D IG + +N
Sbjct: 69 FFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 21/134 (15%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFD 423
L+L VL AH L P+K YCV + K RT+ P W+E++ VFD
Sbjct: 6 LQLNVLEAHKL-PVKH-----VPHPYCVISLNEVKVARTKVREGP-NPVWSEEF---VFD 55
Query: 424 --PCTV--ITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSG 479
P V T+ + + KDS I +V ++LS L+ + YPL P
Sbjct: 56 DLPPDVNSFTISL------SNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLK 109
Query: 480 VRKMGEVQLAVRFT 493
+ G +++ R++
Sbjct: 110 GGEWGSLRIRARYS 123
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 42 LYVRVVKAKDLPGKDV-TGSCDPYVEVKL---GNYKGTTKHFEKKSNPEWNQCFAF---S 94
L V +++ +DLP D +G+ DPYV+++L +K T+ K NP +++ F F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77
Query: 95 KDRIQASVLEVLVKDKD-VVLDDLIGRVMFDLNEVP 129
+++Q L V D DD+IG V+ L
Sbjct: 78 YNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD 113
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
Query: 52 LPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD----RIQASVLE--V 105
L KD GS D Y K G T+ E SNP WN+ + + + V +
Sbjct: 15 LRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQ 74
Query: 106 LVKDKDVVLDDLIGRVMFDLN--EVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLA 161
+ V D LIG+V L+ E + PL + G K K GEL A
Sbjct: 75 SHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPL-----LSLNPSGVK-KMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFG-PRWNEQYTW---E 420
L + V+ A L P D + + A+ G + +RTR G P WNE+ + E
Sbjct: 2 LRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE 58
Query: 421 VFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE 461
F+ +++V + G KD +G+ I L+ +E
Sbjct: 59 PFEDHLILSV--------EDRVGPNKDEPLGRAVIPLNDIE 91
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 369 VLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVI 428
V SA GL +D G D Y + K + VR+ D+ P ++ Q + P + I
Sbjct: 9 VHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPI 65
Query: 429 TVGVFDNGHIHGQGGGGKDSRIGKVRI 455
+ V+++ + D +G+ +
Sbjct: 66 KIQVWNSNLL-------CDEFLGQATL 85
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSK-TINPMWNEDLMF-VAAE 260
+ II+A++L D + F + +VK L G + + + S K T+NP +NE L+F V E
Sbjct: 18 LTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE 77
Query: 261 PFEE-PLILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDH---------KPVNTRWFNL 308
+ LI+ V DRV N E++G C + A + +H KP+ +W L
Sbjct: 78 NVDNVSLIIAVVDYDRVGHN--ELIGVCRVGPNADGQGREHWNEMLANPRKPI-AQWHQL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 384 RGTTDAYCVAKYGQKWV-RTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442
D YC Q+ V RT+T+ S P + E + +E+ ++ ++D +
Sbjct: 19 NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVL---- 74
Query: 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP-SGVRKMGEVQLAVRF 492
+DS IGKV I+ L +PL + S V+ G+V L +R
Sbjct: 75 --RRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQ--GKVHLELRL 121
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 30/132 (22%), Positives = 44/132 (33%), Gaps = 31/132 (23%)
Query: 364 ILELGVLSAHGLTPMKTKDGRGTT--DAYCVAK-YGQKWVRTRTIVDSFG---PRWNEQY 417
LE+ ++SA L K+ Y V T VD G P WNE
Sbjct: 1 TLEITIISAEDL-----KNVNLFGKMKVYAVVWIDPSHKQSTP--VDRDGGTNPTWNETL 53
Query: 418 TW-----EVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL-----ETDRVYT 467
+ + +T+ ++ + D IG+VR+ L L +
Sbjct: 54 RFPLDERLLQQGRLALTI------EVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRF 107
Query: 468 HSYPLLVLHPSG 479
SY L PSG
Sbjct: 108 LSYQLRR--PSG 117
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 194 KVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAIL-------GNQASRTRISPSKTI 246
K Y +RV I+ A++LLP D + + FVK L +T++ KT+
Sbjct: 8 KAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVK-KKTL 66
Query: 247 NPMWNEDLMF-VAAEPFEEP---LILTVEDRVAPNKDEVLGKCLIPLQAV 292
P+++E F V E L+ TV+D ++ G+ +PL +
Sbjct: 67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 35/105 (33%)
Query: 42 LYVRVVKAKDLPGKD-VTGSCDPYVEVKLGNYK--GTTKHFEKKSNPEWN---------- 88
L V + A+ L G D + G+ DPYV + N + TK + SNP WN
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL 63
Query: 89 ------QCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNE 127
+ F+ R KDK LIG FDL+
Sbjct: 64 TEPLNLTVYDFNDKR----------KDK------LIGTAEFDLSS 92
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI 98
M L V V KAK L G + YV +K+ N K TT + S P W Q F F +R+
Sbjct: 1 MSLLCVLVKKAK-LDGAP--DKFNTYVTLKVQNVKSTTIAV-RGSQPCWEQDFMFEINRL 56
Query: 99 QASVLEVLVKDKDVVLDDLIGRVMFDLNEVP 129
L + + +K ++ D L+G V L+ +
Sbjct: 57 DLG-LVIELWNKGLIWDTLVGTVWIPLSTIR 86
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNYKGTTKHFE---KKSNPEWNQCFAF 93
L VRV++ DL K+ G+CDPY V L N K TK + K +NP++++ F F
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYF 56
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVF 422
G+L + V+ A L K + G+G +D Y + G + +T+TI ++ P+WN + +F
Sbjct: 1 GVLRVHVVEAKDLAA-KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59
Query: 423 DP 424
Sbjct: 60 SA 61
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQA 100
L +R+++AK+LP K G+ DPY V L + TK EK NP W + F F
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEKL-NPFWGEEFVFDDPPPDV 57
Query: 101 S--VLEVLVKDKDVV-LDDLIGRV 121
+ L KDK D +IG+V
Sbjct: 58 TFFTLSFYNKDKRSKDRDIVIGKV 81
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 42 LYVRVVKAKDLPGKD--VTGSCDPYVEVKL-GNYKGTTKHFEKKSNPEWNQCF-----AF 93
+ V++ A+ L D + G+ DPY+ V G T+ + NP WN+ F +F
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF 497
Query: 94 SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLN 126
+ D + S + D + D ++G DL
Sbjct: 498 T-DPLNLS-----LYDFNSFKSDKVVGSTQLDLA 525
|
Length = 1227 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQY 417
L + VL A GL D +TD Y +G + RT I ++ PRWN +
Sbjct: 30 LTVTVLRATGLW----GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATF 78
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-GQKWVRTRTIVDSFGPRWNEQYTWEVFD 423
L + V+SA L D G +D + G+K +T+TI + P WNE + V
Sbjct: 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV-- 55
Query: 424 PC---TVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
P V+ V V+D GGKD +G I LS LE + + PL
Sbjct: 56 PSRVRAVLKVEVYD------WDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSC-DPYVEVKLGNY-----KGTTKHFEK 81
KLS +Y + L+V V+ AK+LP D GS DPYV+ L K TK K
Sbjct: 5 KLSISY----KNGTLFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVRK 58
Query: 82 KSNPEWNQCFA---FSKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSP 137
NP +N+ + +Q VL+V V D ++ ++ +G V L ++ +
Sbjct: 59 TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE-- 116
Query: 138 LAPQWYRLE 146
+WY L
Sbjct: 117 ---KWYPLG 122
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 8e-04
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 50 KDL-PGKDVTGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCF-AFSKDRIQASVLEVL 106
K L + TG PY E+ L TT+ +K +NP WN DR + S + V+
Sbjct: 1 KGLDTSESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVV 59
Query: 107 VKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVW 163
VKD D ++G V LN++ + + QW+ L +++ + A+W
Sbjct: 60 VKDDRDRHDPVLGSVSISLNDLIDA----TSVGQQWFPLSGNGQGRIR----ISALW 108
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 9e-04
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMF------- 256
+ + ++ AQ L+ DK+ + +V +G RT+ P + +NP+WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNSSD 61
Query: 257 ---VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEK 310
V ++ + ++ + D+ LG+ +I ++ + +D W+NLEK
Sbjct: 62 RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMD------VWYNLEK 112
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSK-TINPMWNEDLMFV--AA 259
V + + ++L P D S P+ +V+ L ++++R + S K +NP+++E F
Sbjct: 20 VTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE 79
Query: 260 EPFEEPLILTVEDRVA--PNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
E L + V++ + + ++LG+ LI L + K T+W++L
Sbjct: 80 ELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL---DLSKGF-TQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 22/101 (21%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAIL-GNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
+ V++I A++L +D++ + FVK L G + +T+ KT+NP+WNE F
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTI-KKTLNPVWNES--------F 51
Query: 263 EEPLI------LTVE----DRVAPNKDEVLGKCLIPLQAVQ 293
E P+ L VE DR KD++LG I L ++
Sbjct: 52 EVPVPSRVRAVLKVEVYDWDRG--GKDDLLGSAYIDLSDLE 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
Y+ + + ++L SD++ + + FVK L ++ KT+NP+WNE+
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHK---PVNTRW-----------FNL 308
++ L + V D + K+++LG I L ++ P++ + FN
Sbjct: 1101 KDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160
Query: 309 EKH---VIVDGEKKETKFSS 325
+ E +
Sbjct: 1161 RSKYALNVSRKEGILGDIAK 1180
|
Length = 1227 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMF-- 256
P+ + VRV +IEA+ L P VK +G Q T + T P +NE F
Sbjct: 1 PQDFQVRVRVIEARQ-LVGGNID-P--VVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNF 55
Query: 257 --VAAEPFEEPLILTVEDRVAPNKDEVLG 283
E F++ + ++V D + D ++G
Sbjct: 56 HESPDELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 204 VRVNIIEAQDLLPSDKSRF-PEVFVKAILGNQASRTRISPSKTINPMWN-EDLMFVAAEP 261
++V ++ A+DL D+S + FV+ G+ +T + K++NP+WN E F +
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVV-KKSLNPVWNSEWFRFEVDDE 59
Query: 262 --FEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVN--TRWF 306
+EPL + V D + ++ +GK I L + L V+ + WF
Sbjct: 60 ELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL---LLKDSVSQISGWF 105
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISP-SKTINPMWNEDLMFVAAEP 261
II A+ L D + + +VK L ++A++ R KT NP +NE L +
Sbjct: 19 CTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78
Query: 262 FE---EPLILTV--EDRVAPNKDEVLGKCLIPL 289
+ + L L V EDR ++ LG+ IPL
Sbjct: 79 EDIQRKTLRLLVLDEDRF---GNDFLGETRIPL 108
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.002
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 381 KDGRGTTDAYCVAKYGQKWV-RTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIH 439
KD G++D YC+ K + + RT T+ + P W E+YT + ++ V D +
Sbjct: 15 KDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTL- 73
Query: 440 GQGGGGKDSRIGKVRI 455
+D IGKV +
Sbjct: 74 -----SRDDVIGKVSL 84
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKA-ILGNQASRTRISPSKTINPMWNEDLMFV--AAEPF 262
+ II A+DL + +V+ I + T + NP WNE L F
Sbjct: 4 ITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQ 63
Query: 263 EEPLILTVE--DRVAPNKDEVLGKCLIPLQAVQR 294
+ L LT+E D+++G+ +PL+ +
Sbjct: 64 QGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLD 97
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKS--NPEWNQCFAF--S 94
L + ++KA++L D+TG DPYV+V L G K KK+ NP +N+ F
Sbjct: 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVP 75
Query: 95 KDRIQASVLEVLVKDKDVV-LDDLIG 119
+ + L + V D D V ++LIG
Sbjct: 76 PENVDNVSLIIAVVDYDRVGHNELIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 46 VVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFS-KDRIQA-SVL 103
VV K+LPG G D +V K T+ E + NP WN+ F + L
Sbjct: 2 VVSLKNLPGL--KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESL 59
Query: 104 EVLVKDKDVVLDD-LIGRVMFDLNEV 128
E++VKD + V + LIG L ++
Sbjct: 60 EIVVKDYEKVGRNRLIGSATVSLQDL 85
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 42 LYVRVVKAKDLP--GKDVTGSCDPYVEVKL------GNYKGTTKHFEKKS-NPEWNQCFA 92
L ++++ + LP D DPYVEV++ + K TK + NP WN+ F
Sbjct: 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63
Query: 93 FSKDRIQASVLEVLVKDKDVVLDDLIG 119
F + + L +V D+D DD +G
Sbjct: 64 FDVTVPELAFLRFVVYDEDSGDDDFLG 90
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 44 VRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCF 91
+ + KA DL + G DPYV V + KG T NP W++
Sbjct: 5 LHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVL 53
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 345 HYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGR----GTTDAYCVAKYGQKWV 400
+ D+ +IG++E+ + SA GL K GT D Y + + +
Sbjct: 418 SLTIDISQIMAGDSGTAIGVVEVKIKSAEGL-----KKSDSTINGTVDPYITVTFSDRVI 472
Query: 401 -RTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459
+TR ++ P WNE + + + + ++D D +G ++ L+
Sbjct: 473 GKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFK------SDKVVGSTQLDLAL 526
Query: 460 LETDRVYTH 468
L + V +
Sbjct: 527 LHQNPVKKN 535
|
Length = 1227 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFG--PRWNEQYTWE 420
G LE+ ++SA GL + D G D Y + + + R + G P WNE++ +
Sbjct: 1 GTLEVLLISAKGL---QDTDFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFT 56
Query: 421 VFDP 424
V P
Sbjct: 57 VEYP 60
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEV 421
IG L + ++ L P + G +D YC G + +T+ + D+ P+WN + V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSN---GKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70
Query: 422 FD-PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL---LVLHP 477
D V+ + VFD D +G+ IR++ + + + P+ L+LH
Sbjct: 71 KDLEQDVLCITVFDRDFF------SPDDFLGRTEIRVADILKETKESKG-PITKRLLLHE 123
Query: 478 SGVRKMGEVQL 488
V GEV +
Sbjct: 124 --VPT-GEVVV 131
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 772 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.94 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.92 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.88 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.87 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.87 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.87 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.87 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.84 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.84 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.82 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.82 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.81 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.81 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.8 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.8 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.8 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.79 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.79 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.78 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.78 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.78 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.78 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.78 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.78 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.78 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.78 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.77 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.77 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.77 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.77 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.77 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.76 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.76 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.76 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.76 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.75 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.75 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.75 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.75 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.75 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.75 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.75 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.75 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.75 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.74 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.74 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.74 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.74 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.74 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.74 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.74 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.74 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.74 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.73 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.73 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.73 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.73 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.73 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.73 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.72 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.72 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.72 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.72 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.72 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 99.72 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.72 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.72 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.72 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.72 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.71 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.71 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.71 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.71 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.71 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.71 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.71 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.71 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.71 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.7 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.7 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.7 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.7 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.7 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.7 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.69 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.69 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.69 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.69 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.69 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.69 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.69 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.69 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.69 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.69 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.69 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.69 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.68 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.68 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.68 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.68 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.68 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.68 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.68 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.68 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.67 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.67 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.67 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.67 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.66 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.66 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.66 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.66 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.66 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.66 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.65 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.65 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.65 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.65 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.65 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.65 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.64 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.64 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.64 | |
| PLN03008 | 868 | Phospholipase D delta | 99.64 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.64 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.64 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.64 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.64 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.63 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.63 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.63 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.63 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.63 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.63 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.63 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.63 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.62 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.62 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.62 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.61 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.61 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.61 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.61 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.61 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.6 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.6 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.6 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.6 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.59 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.59 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.59 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.59 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.59 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.58 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.58 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.58 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.58 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.58 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.57 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.57 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.57 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.57 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.57 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.57 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.57 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.56 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.56 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.55 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.55 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.55 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.55 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.55 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.55 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.54 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.53 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.53 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.52 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.52 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.52 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.51 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.5 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.5 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.49 | |
| PLN03008 | 868 | Phospholipase D delta | 99.48 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.48 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.45 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.45 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.44 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 99.4 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.4 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.38 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.38 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.37 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.33 | |
| PLN02270 | 808 | phospholipase D alpha | 99.28 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.28 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.17 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.15 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.15 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.13 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.12 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.11 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.08 | |
| PLN02270 | 808 | phospholipase D alpha | 99.05 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.01 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.98 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.96 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.94 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.93 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.9 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.9 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.87 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.87 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.82 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.81 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.8 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.77 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.77 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.76 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 98.75 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.71 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.67 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.67 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.64 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.64 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.62 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.61 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.41 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.36 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.28 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.2 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.94 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.88 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.74 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.66 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.47 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.44 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.27 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.21 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.2 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.96 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.85 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.64 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.55 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.54 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.53 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.43 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.35 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 95.09 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.94 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.59 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.14 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.81 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.81 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.7 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.21 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 92.82 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 92.65 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.59 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 91.33 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 90.49 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 89.83 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 88.77 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 88.48 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 87.92 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 86.97 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 86.64 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 86.06 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 83.21 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 83.09 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 82.74 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 81.99 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 81.29 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=300.49 Aligned_cols=156 Identities=76% Similarity=1.371 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCccCCccccCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004127 617 LPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLAT 696 (772)
Q Consensus 617 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 696 (772)
+|.++++++++++|+|++|++.|+|+|.++|+.+.+++||+|||+|.+|++++++.+++||+++++++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccCCCCCCchhhhhhcCCCCcCCCC
Q 004127 697 QGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772 (772)
Q Consensus 697 ~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r~~~p~~~~~~~~r~Ps~~~~~~ 772 (772)
.+||++|+++|+||.+|++++++|++++++++++|+|+++++||+|++|||+||.++|+.+.|||+||||++|.||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=261.67 Aligned_cols=400 Identities=18% Similarity=0.219 Sum_probs=300.0
Q ss_pred CcCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecC
Q 004127 35 LVEQMQYLYVRVVKAKDLPGKD--VTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKD 111 (772)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~~--~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~ 111 (772)
....+|+|.|+|.+|++|...+ ..+..|||+.+.+.+ ...||++++++.||+|||+|+..+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 4567899999999999999888 689999999999987 568999999999999999999999864 789999999988
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcCCCcCCCCCccCCCCCccc
Q 004127 112 VV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVAN 190 (772)
Q Consensus 112 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 190 (772)
.. +|+.+|++.++|..|..+.... .+-+.+.. +.... |+|...+.+.+........ . . ..|.
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~--~~k~v-GrL~yDl~ffp~~e~k~~~----~-~--s~e~--- 572 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR--NTKNV-GRLTYDLRFFPVIEDKKEL----K-G--SVEP--- 572 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccccc----cceeeeec--cCccc-eEEEEeeeeecccCCcccc----c-c--ccCC---
Confidence 87 9999999999999998764322 22333332 22334 9999999886543321100 0 0 0000
Q ss_pred cccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCee-eeeccccCCCCCCceeceeEEEeeCCCCCcEEEE
Q 004127 191 IRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA-SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILT 269 (772)
Q Consensus 191 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~ 269 (772)
......|++.+++.++++|..... .+..-++++++..+. +.|++++. +.+|.||+++...+.+.....+.+.
T Consensus 573 -----~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 573 -----LEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred -----cccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 011235889999999999975432 233344888888754 55577765 9999999999999988888889999
Q ss_pred EEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCC
Q 004127 270 VEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSD 349 (772)
Q Consensus 270 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~ 349 (772)
++|.. ..+.||+...+|.++.. .......||++..+ .|+|.+...+.+.+-..+
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~---~t~dt~~~f~~~~~------------kg~I~~t~~W~Pi~~~~~-------- 699 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLID---RTLDTFLVFPLRNP------------KGRIFITNYWKPIYNAGG-------- 699 (1227)
T ss_pred ecccc---cCceeccccccchHhhh---ccccceEEEEcCCC------------cceEEEEeccceeecccc--------
Confidence 98864 45688888888888764 34557789999876 789988887655432111
Q ss_pred CCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEE
Q 004127 350 LRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVI 428 (772)
Q Consensus 350 ~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l 428 (772)
..++..+..++|.++|.|..|.+|... ...+++|||++|.+++. ++||.....++||.||+....++..+.+.+
T Consensus 700 --~~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~ 774 (1227)
T COG5038 700 --SSSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRL 774 (1227)
T ss_pred --ccceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEE
Confidence 112333467889999999999999865 67889999999999775 589999999999999999999999999999
Q ss_pred EEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc----CceEeeeE--eeee-cCCCCcccccEEEEEEEEeecc
Q 004127 429 TVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET----DRVYTHSY--PLLV-LHPSGVRKMGEVQLAVRFTCSS 496 (772)
Q Consensus 429 ~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~----~~~~~~~~--~L~~-~~~~g~~~~G~i~l~~~f~~~~ 496 (772)
.++++|....+ .|..||.+.++++++.. +..+..-. ...+ ....|.+..|++++..+|-|..
T Consensus 775 ~l~~~~~~~sg------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 775 TLECMDYEESG------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred eeeeecchhcc------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeec
Confidence 99999999865 89999999999999854 22111110 0011 1111334468899999886654
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=259.11 Aligned_cols=227 Identities=30% Similarity=0.465 Sum_probs=194.2
Q ss_pred cccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEe--cc
Q 004127 23 SITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSK--DR 97 (772)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v--~~ 97 (772)
..|++.|++.|+.... .|.|+|++|++|+..+..|.+||||++++.. .+.+|++.++++||+|||+|.|.+ .+
T Consensus 152 ~~G~l~fsl~Yd~~~~--~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~ 229 (421)
T KOG1028|consen 152 AVGNLQFSLQYDFELN--LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEE 229 (421)
T ss_pred eeeeEEEEEEecccCC--EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHH
Confidence 3788899999997655 9999999999999999778899999999986 468999999999999999999997 34
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CceeeeEEEEEEEeeecCCCcCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG--DKVKTGELMLAVWMGTQADEAFPD 174 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~~~d~~~~~ 174 (772)
+....|.+.|||+|++ ++++||++.++|..+..... ...|.+|..... .... |+|.++++|.+
T Consensus 230 l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~-gel~~sL~Y~p-------- 295 (421)
T KOG1028|consen 230 LSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELA-GELLLSLCYLP-------- 295 (421)
T ss_pred hccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCccccc-ceEEEEEEeec--------
Confidence 5678999999999999 99999999999998876532 467999987632 2233 79999998853
Q ss_pred cCCCCCccCCCCCccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----eeeeeccccCCCCCCc
Q 004127 175 AWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----QASRTRISPSKTINPM 249 (772)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~ 249 (772)
..|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+
T Consensus 296 -------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv 349 (421)
T KOG1028|consen 296 -------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPV 349 (421)
T ss_pred -------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCc
Confidence 3468999999999999999999999999999853 4677888876 99999
Q ss_pred eeceeEEEeeCC--CCCcEEEEEEEccCCCCCceeEEEEEeccc
Q 004127 250 WNEDLMFVAAEP--FEEPLILTVEDRVAPNKDEVLGKCLIPLQA 291 (772)
Q Consensus 250 wne~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~ 291 (772)
|||+|.|.+... ....+.|+|||++.++.+++||.+.+....
T Consensus 350 ~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 350 FNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999999988633 344799999999999999999999887764
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=240.87 Aligned_cols=230 Identities=23% Similarity=0.377 Sum_probs=184.2
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC---eeeeeccccCCCCCCceeceeEEEeeC--CCCCcEEEEEEEc
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN---QASRTRISPSKTINPMWNEDLMFVAAE--PFEEPLILTVEDR 273 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~ 273 (772)
.+...|.|+|++|++|+..+..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||.
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~ 242 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDF 242 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEec
Confidence 44457999999999999999777899999999974 5788999987 9999999999999643 3456899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCcc
Q 004127 274 VAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPT 353 (772)
Q Consensus 274 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~ 353 (772)
|.++++++||++.++|..+.. ......|.++...... .....|+|.+.++.
T Consensus 243 drfsr~~~iGev~~~l~~~~~----~~~~~~w~~l~~~~~~-----~~~~~gel~~sL~Y-------------------- 293 (421)
T KOG1028|consen 243 DRFSRHDFIGEVILPLGEVDL----LSTTLFWKDLQPSSTD-----SEELAGELLLSLCY-------------------- 293 (421)
T ss_pred CCcccccEEEEEEecCccccc----cccceeeeccccccCC-----cccccceEEEEEEe--------------------
Confidence 999999999999999888753 1225679999876211 11123899988874
Q ss_pred ccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeecccCCCCCeecceEEEEeeC---CC
Q 004127 354 AKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIVDSFGPRWNEQYTWEVFD---PC 425 (772)
Q Consensus 354 ~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~---~~~~T~~~~~t~~P~Wne~~~~~v~~---~~ 425 (772)
.+..|.|+|.|++|++|..+ +..+.+||||++.+ ++ .+.||.+++++.||+|||+|.|.|.. ..
T Consensus 294 -----~p~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 294 -----LPTAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred -----ecCCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 33348999999999999998 77799999999977 33 24789999999999999999998874 24
Q ss_pred cEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 426 TVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 426 ~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
..|.|+|||+|.++ .+++||.+.+.... .+....+|..+..
T Consensus 366 ~~l~l~V~d~d~~~------~~~~iG~~~lG~~~--~~~~~~hW~~m~~ 406 (421)
T KOG1028|consen 366 VSLELTVWDHDTLG------SNDLIGRCILGSDS--TGEEVRHWQEMLN 406 (421)
T ss_pred eEEEEEEEEccccc------ccceeeEEEecCCC--CchHHHHHHHHHh
Confidence 57999999999986 78899999988775 2222345554443
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-23 Score=233.04 Aligned_cols=413 Identities=20% Similarity=0.202 Sum_probs=277.9
Q ss_pred ceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEE
Q 004127 29 LSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLV 107 (772)
Q Consensus 29 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V 107 (772)
++.+..+.+++|.++|+|..|++|......+.+|||+++.+++ .++||-....|.||.|||..+.++..+ .+.+.+++
T Consensus 700 ~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~ 778 (1227)
T COG5038 700 SSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLEC 778 (1227)
T ss_pred ccceeeecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCC-ccEEeeee
Confidence 3555667899999999999999999888899999999999998 678999999999999999999999775 56799999
Q ss_pred EecCCC-CCceeEEEEEEccccCCCCCCCCC-----CCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcCC--------
Q 004127 108 KDKDVV-LDDLIGRVMFDLNEVPKRIPPDSP-----LAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFP-------- 173 (772)
Q Consensus 108 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~-------- 173 (772)
.|+... .|..+|++.+++.++..+.+.+.- ....--+|... |...+ |++.+.+.+.+..-....
T Consensus 779 ~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~-~~~~~-~tit~~~~f~p~~i~~s~ee~~~~~k 856 (1227)
T COG5038 779 MDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLT-GKKVK-GTITYKCRFYPAVIVLSLEEVRYVDK 856 (1227)
T ss_pred ecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccc-cCCcc-eeEEEEEEEEeecccCChHHhcchhh
Confidence 999888 999999999999999875332210 01111122221 34455 999998887653210000
Q ss_pred ------------------CcCCCCCccCCCCC--cccc------cccee----ecCceEEEEEEEEEeecCCCCCCCCCC
Q 004127 174 ------------------DAWHSDAATVSGEG--VANI------RSKVY----LSPKLWYVRVNIIEAQDLLPSDKSRFP 223 (772)
Q Consensus 174 ------------------~~~~~~~~~~~~~~--~~~~------~~~~~----~~~~~~~L~V~v~~a~~L~~~~~~~~~ 223 (772)
..|..|......+. .... +.+.. .+-..|.+.+.|+.++ |+. +
T Consensus 857 ~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~-l~~------~ 929 (1227)
T COG5038 857 VSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGE-LPD------P 929 (1227)
T ss_pred hhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEee-cCC------c
Confidence 11111111100000 0000 11111 1234567888888775 321 2
Q ss_pred ccEEEEEECCee--eeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCceeEEEEEeccccccccCCCCC
Q 004127 224 EVFVKAILGNQA--SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPV 301 (772)
Q Consensus 224 dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~ 301 (772)
.-|+.+.+.+.. +-+..... +..+.|.+.-...+.+..-....|.|.+. ....|..+++.+++-.++..+. -.
T Consensus 930 ~~~l~~f~Dd~~~~~i~s~~~~-t~~~~~~~~g~~~ireL~~s~~tfrv~K~-a~~~dk~v~e~t~~t~~lvs~~---~~ 1004 (1227)
T COG5038 930 GQYLQIFFDDASHPQIVSSKAP-TRGERNGESGDTFIRELEYSETTFRVTKN-AKKSDKVVCEVTLPTLDLVSNA---YE 1004 (1227)
T ss_pred ceEEEEEecCCCCceeeccCCc-ccccccchhhhhhhhhhccceEEEEeccC-CcccCceeeecccchhHHHHHh---hC
Confidence 346666666521 11221112 55566666555555555566788888775 2345778888887766665421 12
Q ss_pred CceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccC
Q 004127 302 NTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTK 381 (772)
Q Consensus 302 ~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~ 381 (772)
..-|+.+.+. .++.+++.+.+... .. .+.. .-.+.|.|.|.+..|.||++.
T Consensus 1005 kp~~ln~~g~-------------~~~~v~~~~tPv~~----~l------~~~e---mv~nsG~l~I~~~~~~nl~~~--- 1055 (1227)
T COG5038 1005 KPSSLNFPGS-------------AKVLVQVSYTPVPV----KL------PPVE---MVENSGYLTIMLRSGENLPSS--- 1055 (1227)
T ss_pred CCcEEecCCC-------------ceEEEEEEEeeccc----cc------Ccce---eecccCcEEEEEeccCCCccc---
Confidence 3345544431 34555555433210 00 0100 123459999999999999988
Q ss_pred CCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCc
Q 004127 382 DGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 382 ~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~ 459 (772)
|.+|.+||||++.+.++ .++|+++++|+||+|||.+.++|.. ..+.+.+.|+|||.- ++++.||++.++|+.
T Consensus 1056 d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~------~knd~lg~~~idL~~ 1129 (1227)
T COG5038 1056 DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG------EKNDLLGTAEIDLSK 1129 (1227)
T ss_pred ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC------CCccccccccccHhh
Confidence 78899999999999877 6999999999999999999999995 688999999999983 499999999999999
Q ss_pred cccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 460 LETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 460 l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
++.+..+....+|.+.. .+ ...|.++....|-
T Consensus 1130 l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~r 1161 (1227)
T COG5038 1130 LEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNFR 1161 (1227)
T ss_pred cCcCCccceeeeccCcc-eE-ecccEeecceecc
Confidence 99998888888887642 11 2346666666553
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-22 Score=183.79 Aligned_cols=150 Identities=69% Similarity=1.124 Sum_probs=127.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCcee
Q 004127 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVL 282 (772)
Q Consensus 203 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~i 282 (772)
+|+|+|++|++|+..+..|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37999999999999999999999999999999999999875469999999999999876677899999999988889999
Q ss_pred EEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCc
Q 004127 283 GKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRP 352 (772)
Q Consensus 283 G~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p 352 (772)
|++.++|.++....+.+....+||+|....+..+.++..+..|+|++++++.+.+++.+++.+|++|++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999998753334456789999997631111233446689999999999999999999999998775
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=175.98 Aligned_cols=122 Identities=70% Similarity=1.190 Sum_probs=107.0
Q ss_pred EEEEEEEEecC---CCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCC
Q 004127 364 ILELGVLSAHG---LTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHG 440 (772)
Q Consensus 364 ~l~v~v~~a~~---L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~ 440 (772)
.|+|+|++|+| |+.+ |..|.+||||+|++|+++.||+++++++||+|||+|.|.+.++...|.|+|||++..+.
T Consensus 1 ~L~v~v~~A~~~~~l~~~---d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK---DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCcccccc---ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc
Confidence 37899999999 5555 78899999999999999999999999999999999999999888899999999987520
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQL 488 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 488 (772)
+....+|++||++.++++.+..+....+||+|...+.++.++.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 011237999999999999999999999999999887777888899885
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=174.21 Aligned_cols=118 Identities=23% Similarity=0.368 Sum_probs=104.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccC-CCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD-SFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQ 441 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~ 441 (772)
|.|+|+|++|++++.. + .|++||||+|.+|++++||+++.+ +.||+|||+|.|.+.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 7999999999998764 4 689999999999999999999876 89999999999999877778999999999876
Q ss_pred CCCCCCcccEEEEEecC-ccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 442 GGGGKDSRIGKVRIRLS-TLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 442 ~~~~~~~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+|++||.+.|++. .+..++....||+|... +|..+.|+|+|+++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 57888888999999864 344567999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=209.63 Aligned_cols=247 Identities=21% Similarity=0.326 Sum_probs=193.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCccEEEEEECC-eeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCce
Q 004127 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-QASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEV 281 (772)
Q Consensus 203 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~ 281 (772)
.|+|.|.+|++|+..+..|.+||||.|.+.+ ...||.++.+ ++.|.|.|.|.|.+... -..|.|.|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc-eeeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999987 5789999987 99999999999999653 357999999999 999999
Q ss_pred eEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCccccccccCC
Q 004127 282 LGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPS 361 (772)
Q Consensus 282 iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 361 (772)
||.+.|.-.+|.. .+..+.|+.|..-+ .+....|++++.+.+.+... .
T Consensus 83 IGKvai~re~l~~----~~~~d~W~~L~~VD------~dsEVQG~v~l~l~~~e~~~----------------------~ 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHM----YPGKDTWFSLQPVD------PDSEVQGKVHLELALTEAIQ----------------------S 130 (800)
T ss_pred cceeeeeHHHHhh----CCCCccceeccccC------CChhhceeEEEEEEeccccC----------------------C
Confidence 9999998888863 33588999998763 34567899999998754321 0
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE----EEeecccCCCCCeecceEEEEeeCC-------------
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW----VRTRTIVDSFGPRWNEQYTWEVFDP------------- 424 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~----~~T~~~~~t~~P~Wne~~~~~v~~~------------- 424 (772)
..+...++.++++.+. .+|.+||||++...+.+ .+|+++++|.+|.|+|.|.|.+...
T Consensus 131 -~~~~c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 -SGLVCHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred -CcchhhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCccc
Confidence 1223344555555543 23459999999986655 4999999999999999999988632
Q ss_pred ---CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCC-c---ccccEEEEEEEEee
Q 004127 425 ---CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSG-V---RKMGEVQLAVRFTC 494 (772)
Q Consensus 425 ---~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-~---~~~G~i~l~~~f~~ 494 (772)
.-.|.+.+||+.... .+++|+|++.+++..+........||-|....... . ...|.+++.+.++-
T Consensus 206 e~~~l~irv~lW~~~~~~-----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLV-----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred CCceeeEEEeeccchhhh-----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 346889999954332 26999999999999987666678999998764211 1 23588888888864
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=207.58 Aligned_cols=248 Identities=21% Similarity=0.319 Sum_probs=195.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
.|.|.|.+|+||++.+..|..||||.|.++. +..||.++.+++.|.|.|.|+|.+... -..|.|-|||.| + +|+.|
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-ccccccc
Confidence 6899999999999999999999999999998 478999999999999999999998753 378999999999 6 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCC-CCceeeeEEEEEEEeeecCCCcCCCcCCCCCccCCCCCccccccceee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK-GDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYL 197 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (772)
|.+.|.=.+|... .....|+.|.... ..+++ |+|.+++.+.....
T Consensus 84 GKvai~re~l~~~-----~~~d~W~~L~~VD~dsEVQ-G~v~l~l~~~e~~~---------------------------- 129 (800)
T KOG2059|consen 84 GKVAIKREDLHMY-----PGKDTWFSLQPVDPDSEVQ-GKVHLELALTEAIQ---------------------------- 129 (800)
T ss_pred ceeeeeHHHHhhC-----CCCccceeccccCCChhhc-eeEEEEEEeccccC----------------------------
Confidence 9999998888654 2467899998765 34577 99999997743211
Q ss_pred cCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCee----eeeccccCCCCCCceeceeEEEeeCC------------
Q 004127 198 SPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA----SRTRISPSKTINPMWNEDLMFVAAEP------------ 261 (772)
Q Consensus 198 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~kT~~~~~~t~nP~wne~f~f~~~~~------------ 261 (772)
..-+...+++++++.+... +.+|||+++...+.. .+|++.++ |.+|.|+|.|.|.+...
T Consensus 130 ---~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 130 ---SSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred ---CCcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcc
Confidence 0124555666777766653 559999999987643 48999887 99999999999988654
Q ss_pred ---CCCcEEEEEEE-ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEc
Q 004127 262 ---FEEPLILTVED-RVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLD 334 (772)
Q Consensus 262 ---~~~~l~i~V~d-~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~ 334 (772)
....|++.+|+ ++....++|+|++.+++..+.. ......||.|...+ .|++.....-.|.+.++++..
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~-~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP-NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC-CcccCCCCCCccceeeeEEee
Confidence 23367788888 4555669999999999988762 23477899998762 344444455578888888753
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=166.74 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=101.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecC-CCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEK-KSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|.|+|++|++++..+ .|++||||++.+++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999988777 789999999999999999999865 79999999999999764 46799999999999 8999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 118 IGRVMFDLN-EVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 118 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
||++.+++. .+..+ +....||+|.+.++.... |+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g-----~~~~~W~~L~~~~~~~~~-g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNG-----ETLDDWYSLSGKQGEDKE-GMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCC-----CCccccEeCcCccCCCCc-eEEEEEEeC
Confidence 999999996 45544 236899999987766555 999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=167.09 Aligned_cols=120 Identities=73% Similarity=1.212 Sum_probs=107.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~ 120 (772)
+|.|+|++|+||+.. .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999887 7899999999999999999999999999999999988766789999999999778999999
Q ss_pred EEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 121 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
+.+++.++..+...+.....+||+|.+..+.+.+ |+|.++++++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~-G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVG-GELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccc-eEEEEEEEec
Confidence 9999999987654455567899999988765666 9999999985
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=169.89 Aligned_cols=118 Identities=24% Similarity=0.392 Sum_probs=102.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC------CCcEEEEEEEeCCcC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD------PCTVITVGVFDNGHI 438 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~------~~~~l~i~v~D~~~~ 438 (772)
++|+|++|+||+.+ +..|.+||||+|++++.++||++++++.||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47899999999987 667899999999999999999999999999999999999976 367899999999987
Q ss_pred CCCCCCCCCcccEEEEEecCccc--cCceEeeeEeeeecCCCCcccccEEEEEEE
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLE--TDRVYTHSYPLLVLHPSGVRKMGEVQLAVR 491 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 491 (772)
+ +|++||++.++++++. .+.....||+|.+...+..+..|+|+++++
T Consensus 78 ~------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 G------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred C------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 5 8999999999999987 566778999998654333445799998763
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=165.26 Aligned_cols=120 Identities=27% Similarity=0.404 Sum_probs=106.9
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
.|+|+|++|+||+.. |..|.+||||++.+++ ..+||+++.++.||+|||.|.|.+.++.+.|.|+|||++.++
T Consensus 1 ~L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999987 6668999999999987 578999999999999999999999887889999999999865
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||++.+++.++..+.....|++|.+.. +.+..|+|++.++|+|
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 ---TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred ---CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 8999999999999999888889999997643 3456799999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-20 Score=167.26 Aligned_cols=116 Identities=30% Similarity=0.514 Sum_probs=98.3
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHG 440 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~ 440 (772)
..|.|+|.|.+|.||... |..++|||||++++|+++.||+++++++||+|||.|+|.+.+++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeee---ccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 358999999999999887 7768999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLA 489 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 489 (772)
.||+||.+.|+|..+.... ..++ |....+.|... |+|.++
T Consensus 80 -----~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s 119 (168)
T KOG1030|consen 80 -----SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLS 119 (168)
T ss_pred -----cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEec
Confidence 9999999999999998766 3444 44433333322 444433
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=164.36 Aligned_cols=117 Identities=28% Similarity=0.534 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEecc-----CCCceEEEEEEecCCC-CC
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDR-----IQASVLEVLVKDKDVV-LD 115 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-----~~~~~L~i~V~d~~~~-~d 115 (772)
++|+|++|+||+..+..|.+||||++.+++++.+|++++++.||+|||+|.|.+.. +....|.|+|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999988999999999999999999999999999999999999865 3568899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--ceeeeEEEEEE
Q 004127 116 DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD--KVKTGELMLAV 162 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~ 162 (772)
++||++.++|.++.... .....+||+|.+..+. +.. |+|.+++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~-Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKER-GEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCcccc-ceEEEEe
Confidence 99999999999987422 1235799999865542 345 9999886
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=168.52 Aligned_cols=124 Identities=23% Similarity=0.340 Sum_probs=108.4
Q ss_pred cEEEEEEEEecCCCCCccC---------------------------CCCCCcCcEEEEEECCEE-EEeecccCCCCCeec
Q 004127 363 GILELGVLSAHGLTPMKTK---------------------------DGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWN 414 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~---------------------------~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wn 414 (772)
|.|.|+|++|++|+++|.. ...|.+||||+|.+++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998621 246789999999998765 699999999999999
Q ss_pred ceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 415 EQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 415 e~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
|+|.|.+.++.+.|.|+|+|++.+ ++++||++.++++++..+.....|++|.+...++.+..|+|+++++|+
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~-------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVV-------GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCc-------CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 999999988888999999999875 468999999999999988888999999876555555678999999983
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=164.78 Aligned_cols=124 Identities=28% Similarity=0.498 Sum_probs=107.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecC-CCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEK-KSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
+|+|+|++|+||++.+..|.+||||++.+++++.+|+++.+ +.||+|||+|.|.+.++..+.|.|+|+|++.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 48999999999999999999999999999999999999966 69999999999999876668999999999987 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC-------CceeeeEEEEEEEeee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG-------DKVKTGELMLAVWMGT 166 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-------~~~~~G~l~l~~~~~~ 166 (772)
|++.++|.++..+. .......+||+|.+..+ .+.+ |+|.+.+.+..
T Consensus 81 G~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~~~~~k~~k~~-g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRV-DDRPVPSRWFSLERPGGAMEQKKKRKFA-SRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccC-CCCccCCceEECcCCCCcccccccCccc-ccEEEEEEecC
Confidence 99999999997542 22345689999998754 2345 99999998853
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-19 Score=160.54 Aligned_cols=111 Identities=32% Similarity=0.482 Sum_probs=98.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEe---c
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSK---D 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v---~ 96 (772)
|++.+++.|+ .+.|.|+|++|+||+..+ .+.+||||++++.+ .++||++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 6789999999 468999999999999999 89999999999974 468999999999999999999986 3
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
++....|.|+|||++.. ++++||++.++|.++.... ....||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 45568999999999998 8999999999999998552 35789987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-19 Score=157.71 Aligned_cols=119 Identities=25% Similarity=0.423 Sum_probs=102.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
|.|.|++|+||+.++ +..|.+||||+|.++++ .+||+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 678999999999863 23578999999999775 58999999999999999999999876789999999999875
Q ss_pred CCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 444 GGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++++||.+.++++++..+.....||+|......+. ..|+|+++++|
T Consensus 76 --~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred --CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 89999999999999988888899999986533332 46999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=159.83 Aligned_cols=124 Identities=27% Similarity=0.452 Sum_probs=105.7
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-C
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-L 114 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~ 114 (772)
-+.+|.|+|+|++|++|+..+..|.+||||++.++++..+|++++++.||.|||+|.|.+.++..+.|.|+|||++.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 466799999999999999999889999999999999999999999999999999999999877778999999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|++||++.+++.++............+|..|.... .|+|.+++++
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~-----~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVP-----TGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecccccc-----ceeEEEEEEe
Confidence 99999999999999864332233344666664332 3999998865
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=157.05 Aligned_cols=118 Identities=28% Similarity=0.449 Sum_probs=104.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
+|+|+|++|+||+..+..|.+||||++.+++ ...+|+++.++.||+|||+|.|.+.++ .+.|.|+|||++.. +|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999889999999999988 678999999999999999999998765 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
|.+.+++.++..+.+ ...|++|.+..+.+.. |+|.+.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~-G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDL-GYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccCc-eEEEEEEEEC
Confidence 999999999986532 5689999877654455 9999999774
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=157.12 Aligned_cols=117 Identities=31% Similarity=0.449 Sum_probs=101.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeec-CCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCcee
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFE-KKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLI 118 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~l 118 (772)
|.|+|+|++|+||+..+..+.+||||++.+++++.+|+++. ++.||+|||.|.|.+.....+.|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 68999999999999999889999999999999999999885 57899999999999977656889999999987788999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|++.+++.++..+. ...+|++|.... +.. |+|.++++|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~--~~~-G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG--RYA-GEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC--cEe-eEEEEEEEC
Confidence 99999999987652 257899998643 344 999999864
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=155.87 Aligned_cols=113 Identities=32% Similarity=0.386 Sum_probs=96.8
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC----
Q 004127 41 YLYVRVVKAKD---LPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV---- 113 (772)
Q Consensus 41 ~L~V~v~~a~~---L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~---- 113 (772)
.|.|+|++|+| |...|..|++||||++++++++.||++++++.||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccccc
Confidence 38999999999 88889999999999999999999999999999999999999999764 46899999999875
Q ss_pred ---CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--ceeeeEEEE
Q 004127 114 ---LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD--KVKTGELML 160 (772)
Q Consensus 114 ---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l 160 (772)
+|++||++.++|..+..+. ....||+|...++. +.. |+|.+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~-g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKM-GELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCC-cEEEe
Confidence 8999999999999997653 25789999965422 222 77653
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=155.90 Aligned_cols=119 Identities=26% Similarity=0.464 Sum_probs=101.8
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCC-cEEEEEEEeCCcCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVFDNGHIHG 440 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~D~~~~~~ 440 (772)
..|+|.|++|+||+.. +.+||||+|.+++.. .||++ +++.||.|||.|.|.+..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 5799999999999863 468999999998754 68987 46899999999999876553 67999999998865
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||++.++|.++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 -----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999888889999998765444556799999999964
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=157.45 Aligned_cols=120 Identities=34% Similarity=0.439 Sum_probs=102.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCC---CceEEEEEEecCCC--CC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQ---ASVLEVLVKDKDVV--LD 115 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~~L~i~V~d~~~~--~d 115 (772)
.|+|+|++|+||++.+..|.+||||++.+++++++|++++++.||+|||.|.|.+.++. ...|.|+|||++.. +|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999988899999999999999999999999999999999999986532 46899999999876 79
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC-CCceeeeEEEEEEEee
Q 004127 116 DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK-GDKVKTGELMLAVWMG 165 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~ 165 (772)
++||++.+++.++... .....+||+|+.+. ..+.+ |+|.+++++.
T Consensus 81 ~~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~-G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVR-GEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCcc-EEEEEEEEEc
Confidence 9999999999999732 23467999999753 22356 9999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=157.52 Aligned_cols=116 Identities=30% Similarity=0.491 Sum_probs=100.9
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccC-CCCCeecceEEEEeeC-CCcEEEEEEEeCCcCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD-SFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIHG 440 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~~ 440 (772)
|.|+|.|++|+||+.. +..|.+||||+|++++...||+++.+ +.||.|||.|.|.+.. ..+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987 66789999999999999999999865 7999999999999987 467899999998863
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+|++||++.+++.++..+....+||+|... | +..|+|++++.|
T Consensus 76 -----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -----KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred -----CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 489999999999998777667899999753 2 456999999876
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=157.78 Aligned_cols=119 Identities=25% Similarity=0.476 Sum_probs=102.2
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCc
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGH 437 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~ 437 (772)
....|.|+|+|++|+||+.. |..|.+||||++.+++..+||++++++.||.|||.|.|.+.++ .+.|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 46679999999999999987 6678999999999999999999999999999999999999875 5789999999998
Q ss_pred CCCCCCCCCCcccEEEEEecCcccc-----CceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLET-----DRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++ +|++||++.+++.++.. ...+..|.++. .+..|+|+|++.|
T Consensus 88 ~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~------~~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS------PDDFLGRTEIRVADILKETKESKGPITKRLLLH------EVPTGEVVVKLDL 135 (136)
T ss_pred CC------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc------cccceeEEEEEEe
Confidence 65 89999999999999875 33445555553 2345999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-19 Score=159.15 Aligned_cols=94 Identities=37% Similarity=0.545 Sum_probs=89.1
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CC
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LD 115 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d 115 (772)
...|.|+|+|++|.||..+|..+++||||.+.+++++.||++++++.||+|||.|.|.+.++ ...|+++|||+|.+ +|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcc
Confidence 34689999999999999999889999999999999999999999999999999999999986 68899999999999 99
Q ss_pred ceeEEEEEEccccCCC
Q 004127 116 DLIGRVMFDLNEVPKR 131 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~ 131 (772)
|+||.++|+|..+...
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999999866
|
|
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-18 Score=154.14 Aligned_cols=114 Identities=25% Similarity=0.482 Sum_probs=102.4
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~ 442 (772)
+++|.|++|+||+.. +..|.+||||++++++..++|+++++|.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 378999999999987 5568899999999999999999999999999999999999876 789999999999865
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+|++||++.++++++..+.....|++|... .|+|++++.++
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 75 ---KDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred ---CCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 899999999999999988888999999642 49999888764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=151.69 Aligned_cols=110 Identities=18% Similarity=0.290 Sum_probs=91.6
Q ss_pred CCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeecCCCCCeeccEEEEEec--cCC
Q 004127 26 GDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN----YKGTTKHFEKKSNPEWNQCFAFSKD--RIQ 99 (772)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~ 99 (772)
.+.||+.|+.. .+.|.|+|++|+||+ . .|.+||||++++.. .+.+|+++++|.||+|||+|.|.+. ++.
T Consensus 2 ~l~fsL~Y~~~--~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 2 KLHYSLSYDKQ--KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred eEEEEEEEcCc--CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 45678888754 569999999999999 3 36799999999974 4779999999999999999999984 456
Q ss_pred CceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 100 ASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 100 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
...|.|.|||+|++ ++++||++.+++.++.... ...+|..|
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~-----~~~~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMML-----GAAQWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCc-----cccchhcC
Confidence 78899999999999 9999999999999875442 24467554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=154.13 Aligned_cols=118 Identities=29% Similarity=0.497 Sum_probs=103.5
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
|.|+|.|++|+||+.+ +..+.+||||+|.+++..++|++++++.||.|||+|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6899999999999987 6668899999999999999999999999999999999999877889999999998764
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++++||++.+++.++..+. .+||+|......+ +..|+|.++++|
T Consensus 75 ---~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 ---KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred ---CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 8899999999999998776 6899997653322 346999999887
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=156.74 Aligned_cols=121 Identities=31% Similarity=0.485 Sum_probs=102.9
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC----CcEEEEEEEeCCcCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP----CTVITVGVFDNGHIH 439 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~----~~~l~i~v~D~~~~~ 439 (772)
.|.|+|++|+||+.. +..|.+||||++.++++.+||++++++.||+|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 378999999999987 6668899999999999999999999999999999999999864 357999999988752
Q ss_pred CCCCCCCCcccEEEEEecCccc-cCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLE-TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+++++||++.++++++. .+.....||+|......+ +..|+|+|++.||
T Consensus 78 -----~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 78 -----RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred -----CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 26899999999999997 566778999998653322 3569999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=155.89 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=100.5
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
|++++++.|+... +.|.|+|++|+||++.+.. |.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~~~--~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFRT--SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 7789999999755 4999999999999998864 8999999999964 36799999999999999999999843
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+....|.|.|||.+.. ++++||++.|+|.++..... .+....||+|
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l 127 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPL 127 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEEC
Confidence 3457999999999988 99999999999999965532 2356799998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=157.40 Aligned_cols=116 Identities=25% Similarity=0.273 Sum_probs=100.0
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~ 97 (772)
.|++.+++.|. .+.|.|+|++|+||++.+ ..|.+||||++++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 17 ~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~- 91 (146)
T cd04028 17 MGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS- 91 (146)
T ss_pred cceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-
Confidence 68899999984 478999999999999864 568899999999964 2679999999999999999999998
Q ss_pred CCCceEEEEEE-ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 98 IQASVLEVLVK-DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 98 ~~~~~L~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+.+..|.|+|| |.+.+ ++++||++.|+|.++..+. ....||+|.+..
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 56789999999 57777 8999999999999986542 257899998754
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=152.11 Aligned_cols=113 Identities=35% Similarity=0.531 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
+|+|+|++|+||+..+..+.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999889999999999999999999999999999999999999776678999999999998 999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 120 RVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
++.++|.++..+. ....|++|.+.. |+|.+.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~------G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDGE------GSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCCC------cEEEEEEEe
Confidence 9999999987653 367899998652 888887765
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-18 Score=154.77 Aligned_cols=120 Identities=20% Similarity=0.379 Sum_probs=102.5
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC--EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
|.|+|++|+||+. ..|.+||||++.+++ +.+||+++++|.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 4689999999985 347899999999974 568999999999999999999999766788999999999864
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEeec
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCS 495 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 495 (772)
+|++||++.+++.++..+.....|++|......+.+..|+|++++.|...
T Consensus 73 ---~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 ---DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ---CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 89999999999999988777789999986533334457999999999653
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=155.86 Aligned_cols=115 Identities=27% Similarity=0.429 Sum_probs=99.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
|++.+++.|+.. .+.|.|+|++|+||++.+.. |.+||||++++.+ .++||++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~~--~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDPK--LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEECC--CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 678999999765 45899999999999999875 8999999999963 3579999999999999999999985
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
++....|.|+|||++.. ++++||++.++|.++.... ....||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 34567899999999988 9999999999999996542 356899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-18 Score=185.53 Aligned_cols=186 Identities=21% Similarity=0.310 Sum_probs=155.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHccch--hHHHHHHHHHHHHhhcccc-CCC
Q 004127 561 WSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPLTTILIHILFIILVLYPEL--ILPTVFLYLFLIGIWNFRW-RPR 637 (772)
Q Consensus 561 ~s~~~l~~n~~rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~~~~~~~~~~~~-~~~ 637 (772)
....-+=+|+.-|++++.|+..++.+++.|.+|++|.+|+.|++++++++|..|+ ++|++++++++.|++.+.. +.+
T Consensus 480 vkveGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g 559 (683)
T PF04842_consen 480 VKVEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLG 559 (683)
T ss_pred HhhcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3444556899999999999999999999999999999999999999999999776 7999999999999997654 333
Q ss_pred CCCCCCccCCccccCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccCCchhHHHHH
Q 004127 638 HPPHMDTRLSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFV 717 (772)
Q Consensus 638 ~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~ 717 (772)
.+. ++... ..+|+...++++.++|+.+.++++.|+.++.++.|+|+++.|..|.+|..++
T Consensus 560 ~~~------------------~~v~V--~~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va 619 (683)
T PF04842_consen 560 KSF------------------GEVTV--RDPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVA 619 (683)
T ss_pred Ccc------------------ceEEe--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 221 11111 2345567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhh-hhcCCccCCCC----CCchhhhhhcCCC
Q 004127 718 TFCLIAAIVLYVTPFQVVALLAGIY-VLRHPRFRHKL----PSVPLNFFRRLPA 766 (772)
Q Consensus 718 ~~l~~~~~~~~~iP~r~i~~~~g~~-~~~~P~~r~~~----p~~~~~~~~r~Ps 766 (772)
++++++|+++.++|+||++++..+. |+|+=.+|+.- -..+..+|-++|.
T Consensus 620 ~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 620 LALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999998888 77876687631 1133456777774
|
|
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-18 Score=154.12 Aligned_cols=122 Identities=30% Similarity=0.443 Sum_probs=105.1
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCc
Q 004127 40 QYLYVRVVKAKDLPGKDV--TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~ 116 (772)
|.|+|+|++|+||+..+. .+.+||||++.+++++.+|++++++.||.|||+|.|.+.++..+.|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999887 78999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC---ceeeeEEEEEEEe
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD---KVKTGELMLAVWM 164 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---~~~~G~l~l~~~~ 164 (772)
+||++.+++.++.... ......+||+|.+.... ... |+|.+++++
T Consensus 81 ~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~-G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVS-GEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhccc--ccCccceeEEccCcccCcccccc-ceEEEEEEC
Confidence 9999999999997431 12335799999876422 245 999998853
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.1e-18 Score=152.64 Aligned_cols=100 Identities=24% Similarity=0.375 Sum_probs=89.0
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEee---C-CCcEEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVF---D-PCTVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~---~-~~~~l~i~v~ 433 (772)
+.|.|.|++|+||+.+ + .|.+||||+|++.+ .+.||++++++.||+|||+|.|++. + ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 7899999999999988 5 68999999999953 4689999999999999999999973 2 3578999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
|++.++ ++++||++.++|+++..++....||+|
T Consensus 89 d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999865 899999999999999888778899987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=149.10 Aligned_cols=102 Identities=30% Similarity=0.438 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCcee
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLI 118 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~l 118 (772)
|+.|.|+|++|++|+..+ ..||||++++++++.+|+++++ .||.|||+|.|.+.+.. ..|.|+|||++.++|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999997644 5699999999999999999977 59999999999998754 449999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
|++.|+|.++..+. .++.++||+|+..
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 4667899999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=153.46 Aligned_cols=120 Identities=22% Similarity=0.424 Sum_probs=102.5
Q ss_pred cEEEEEEEEecCCCCCccCCC--CCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcCC
Q 004127 363 GILELGVLSAHGLTPMKTKDG--RGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIH 439 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~--~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~ 439 (772)
|.|+|.|++|+||+.. +. .+.+||||++.+++..++|++++++.||.|||+|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAK---DRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 6899999999999987 54 6889999999999999999999999999999999999997 5789999999999865
Q ss_pred CCCCCCCCcccEEEEEecCccc---cCceEeeeEeeeecCC-CCcccccEEEEEEE
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLE---TDRVYTHSYPLLVLHP-SGVRKMGEVQLAVR 491 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~ 491 (772)
++++||.+.+++.++. .......||+|.+... +.....|+|+|++.
T Consensus 78 ------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 8899999999999986 3344689999986532 22235799998875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-18 Score=146.76 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=86.4
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEE
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVG 431 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~ 431 (772)
.+..+.|.|.|++|+||+ . + |.+||||++++.. .+.+|+++++|+||+|||+|.|.|.. +...|.|.
T Consensus 10 ~~~~~~L~V~vikA~~L~-~---~--g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V---D--AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C---C--CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 344589999999999998 2 3 4599999999953 46799999999999999999999884 46789999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
|||+|.++ ++++||++.+++.++.-+...++|..|
T Consensus 84 V~d~Drfs------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC------CCceEEEEEEccccccCCccccchhcC
Confidence 99999986 999999999999988655555777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=191.09 Aligned_cols=406 Identities=19% Similarity=0.219 Sum_probs=256.8
Q ss_pred cceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC---------
Q 004127 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI--------- 98 (772)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--------- 98 (772)
.+|+-++- -..+.+++.|.+|++|.+.+..+-+|||+.+.+.++.+.|.++.+|+||.|+++..|.-.+.
T Consensus 195 ~~Sc~~~e-~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 195 EFSCYLSE-VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred ceEEecch-hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 45555543 33467999999999999999999999999999999999999999999999999999973221
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcCCCcCC
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWH 177 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~ 177 (772)
.-..+.++|||.++. .++++|.......-... +..-.|+++.... ... |++.++..+...+. +-.|-
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~--~l~-gd~l~a~eliq~~~---~i~~p 341 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGA--FLD-GDVLIAAELIQIGK---PIPQP 341 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec------CCccceEEeeccc--ccc-cchhHHHHHHhhcC---CCCCC
Confidence 125788999999998 99999998776544332 1245799987643 333 77776654332221 01111
Q ss_pred CCCccCCCCC-ccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEE
Q 004127 178 SDAATVSGEG-VANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMF 256 (772)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f 256 (772)
.......... ....|+ ..+.+.+.|-...-+++..........|-+.+.+|++..++..+.+.-.||.++..|.+
T Consensus 342 ~~~~~~~~~~vp~~iRp----~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~ 417 (1105)
T KOG1326|consen 342 PPQREIIFSLVPKKIRP----KTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLG 417 (1105)
T ss_pred CcccccceeccccCCCc----ceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEE
Confidence 1110000000 011121 23444455444455555555445567899999999999988888777789999977655
Q ss_pred EeeC-CC----CCcEEEEEEEccCCCCCceeEEEEEecc-ccc----------cccC--------------CCCCCceeE
Q 004127 257 VAAE-PF----EEPLILTVEDRVAPNKDEVLGKCLIPLQ-AVQ----------RRLD--------------HKPVNTRWF 306 (772)
Q Consensus 257 ~~~~-~~----~~~l~i~V~d~d~~~~d~~iG~~~i~l~-~l~----------~~~~--------------~~~~~~~w~ 306 (772)
.... +. ...+.++|.|.+.++.....|+|.+.-. ... .+.+ .....+.|+
T Consensus 418 ~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l 497 (1105)
T KOG1326|consen 418 RLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTL 497 (1105)
T ss_pred EEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCC
Confidence 4322 22 3378899999999999999999987521 110 0000 000011111
Q ss_pred EcccCccccC---------------ccccc--cccceEEEEEEE----------------------cCCcc--ccCCCcc
Q 004127 307 NLEKHVIVDG---------------EKKET--KFSSRIHLRICL----------------------DGGYH--VLDESTH 345 (772)
Q Consensus 307 ~L~~~~~~g~---------------~~~~~--~~~G~l~l~i~~----------------------~~~~~--~~~~~~~ 345 (772)
+......+++ ..+.. .......++++- .|... ..+++..
T Consensus 498 ~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Iv 577 (1105)
T KOG1326|consen 498 PASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIV 577 (1105)
T ss_pred CCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchh
Confidence 1111100000 00000 011123333321 11100 0000000
Q ss_pred ---------c------CCCCCcccccc---ccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE--EEeecc
Q 004127 346 ---------Y------SSDLRPTAKQL---WKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW--VRTRTI 405 (772)
Q Consensus 346 ---------~------~~~~~p~~~~~---~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~--~~T~~~ 405 (772)
| +.+..|..-+. -.+..-.++|.|++|.+|.+. |.+|.+|||+++.+|++. -+++.+
T Consensus 578 g~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yi 654 (1105)
T KOG1326|consen 578 GEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYI 654 (1105)
T ss_pred hhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcC
Confidence 0 01111110000 023345788999999999988 888999999999999988 577789
Q ss_pred cCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCc
Q 004127 406 VDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 406 ~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~ 459 (772)
.+|+||+|++.|++....| ...++++|||+|..+ +|+.||...++|..
T Consensus 655 p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 655 PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA------QDEKIGETTIDLEN 703 (1105)
T ss_pred cCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc------ccchhhceehhhhh
Confidence 9999999999999999887 467999999999875 89999999999875
|
|
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=151.85 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=98.3
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDV-TGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
|++.++++|+ +..+.|.|+|++|+||+..+. .|.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~--~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYD--YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEE--CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 7788999996 455689999999999998765 47899999999963 35799999999999999999999853
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+....|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 3467899999999988 9999999999999997653 267899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-17 Score=152.24 Aligned_cols=119 Identities=29% Similarity=0.449 Sum_probs=101.3
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~ 442 (772)
+|+|+|++|++|+.+ +..+.+||||+|.+++..++|++++++.||.|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 488999999999987 6667899999999999999999999999999999999999875 578999999999865
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCC---CcccccEEEEEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPS---GVRKMGEVQLAVR 491 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~~ 491 (772)
++++||.+.+++.++..+.....||.|...... ..+..|.|++.|+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 ---KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred ---CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 889999999999999876667899999764322 1234688887763
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=152.53 Aligned_cols=105 Identities=22% Similarity=0.323 Sum_probs=90.7
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEE-eCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVF-DNG 436 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~-D~~ 436 (772)
|.|.|.|++|+||++.+ +..|.+||||++++. + .+.||+++++|+||+|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998752 245789999999993 3 268999999999999999999999866789999999 566
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
.++ ++++||.+.|+|+++..+.....||+|...
T Consensus 107 ~~~------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 643 889999999999999877778999999754
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=148.92 Aligned_cols=119 Identities=20% Similarity=0.318 Sum_probs=101.2
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
+.++|+|++|++|... +..|.+||||++.++++.+||++++++.||+|||.|.|.+.++...|.|+|||++.+
T Consensus 3 ~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~---- 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL---- 75 (126)
T ss_pred EEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC----
Confidence 6899999999999887 667899999999999999999999999999999999999988888999999999864
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCC-CCcccccEEEEEEEEe
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP-SGVRKMGEVQLAVRFT 493 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~f~ 493 (772)
+|++||.+.+++.++..+. .++++|..... ...+..|+|.+++.+.
T Consensus 76 ---~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 ---CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ---CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 6899999999999865444 67888864321 2234579999888764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-18 Score=147.53 Aligned_cols=103 Identities=29% Similarity=0.446 Sum_probs=93.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~ 120 (772)
.|.|+|++|+||+..+..+.+||||++++++++.+|++++++.||+|||.|.|.+..+..+.|.|+|+|.+. +++||+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~ 78 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGS 78 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEE
Confidence 489999999999999888999999999999999999999999999999999999987667899999999886 899999
Q ss_pred EEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 121 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+.++|.++.... ....++||+|.+.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999998653 2446899999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=150.15 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=90.4
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
..+.|.|.|++|+||+..+ ...|.+||||+|.+. ..+.||++++++.||+|||+|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 3479999999999998762 235789999999883 235799999999999999999999875 356899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
||++.++ ++++||.+.+++.++...+..+.||||.
T Consensus 91 ~d~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDRFG------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCCCC------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999865 8999999999999998888889999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=152.87 Aligned_cols=118 Identities=26% Similarity=0.432 Sum_probs=100.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-------EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCc
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGH 437 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~ 437 (772)
|+|+|++|+||+.. +..|.+||||+|.+++. .++|+++++|.||.|||+|.|.+......|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 78999999999987 66788999999999654 479999999999999999999987767789999999998
Q ss_pred CCCCCCCCCCcccEEEEEecCccccCc------eEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLETDR------VYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++ ++++||++.+++.++..+. ....||+|......+ +..|+|++++.|
T Consensus 79 ~~------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 79 LT------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CC------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 65 8999999999999987543 246999998653333 346999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=147.42 Aligned_cols=116 Identities=34% Similarity=0.599 Sum_probs=102.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
|.|.|+|++|+||+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 68999999999999999888999999999999889999999999999999999998764 57899999999987 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEe
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWM 164 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 164 (772)
|++.+++.++..+ ...||+|.+..+. ..+ |+|.+++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~-G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAK-GSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCcee-eEEEEEEEe
Confidence 9999999998644 3589999876533 355 999998865
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-17 Score=150.35 Aligned_cols=122 Identities=25% Similarity=0.417 Sum_probs=99.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC---------CCceEEEEEEec
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI---------QASVLEVLVKDK 110 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~---------~~~~L~i~V~d~ 110 (772)
++|+|+|++|++|+..+..|.+||||++.+++++.+|+++++|.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47999999999999999999999999999999999999999999999999999985322 125799999999
Q ss_pred CCC-CCceeEEEEEE-ccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 111 DVV-LDDLIGRVMFD-LNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 111 ~~~-~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
+.. +|++||++.+. +..+... .......+|++|....+ .. |+|.+++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~~--~~-Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGGQ--SA-GELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCCC--ch-hheeEEeEEEE
Confidence 988 89999999974 4444321 13455789999985532 34 99999998754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-17 Score=149.07 Aligned_cols=116 Identities=32% Similarity=0.486 Sum_probs=99.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
.|+|+|++|++|+..+..+.+||||++++++++.+|++++++.||.|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999999888999999999999999999999999999999999999776568899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCC-----ceeeeEEEEEE
Q 004127 120 RVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-----KVKTGELMLAV 162 (772)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-----~~~~G~l~l~~ 162 (772)
.+.++|.++.... ....||.|.+.... +. .|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~-~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGN-LGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC-----CCCCEEECCCCCCCCccccCc-eEEEEEEe
Confidence 9999999997542 24689999864311 12 38888765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=150.33 Aligned_cols=117 Identities=26% Similarity=0.511 Sum_probs=100.7
Q ss_pred cEEEEEEEEecCCCCCccCC---CCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTKD---GRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~---~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~ 438 (772)
|.|+|.|++|+||+..+... ..|.+||||+|++++..++|++++++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999874211 14689999999999999999999999999999999999986 578999999999863
Q ss_pred CCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++++||.+.+++.++..+.....||+|.+. ..|+|+++++|
T Consensus 81 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 -------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred -------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 789999999999999887778899999752 45999988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=150.46 Aligned_cols=103 Identities=20% Similarity=0.366 Sum_probs=89.4
Q ss_pred ccEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGR-GTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
.+.|.|.|++|+||+++ +.. |.+||||++++. ..+.||++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 37899999999999987 553 789999999983 234799999999999999999999874 346899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
||++.++ ++++||.+.|+|.++..++....||+|.
T Consensus 91 ~d~~~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999865 8999999999999998777778999873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=148.43 Aligned_cols=114 Identities=32% Similarity=0.486 Sum_probs=98.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCce
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDL 117 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~ 117 (772)
.|.|+|++|+||+..+..+.+||||++.+++ ++.+|++++++.||+|||+|.|.+.......|.|+|||++..+|++
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcc
Confidence 3789999999999988888999999999974 5789999999999999999999987655678999999998888999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
||++.+++.++..+. ....|++|.+.. . |+|.+.+.+
T Consensus 81 iG~~~~~l~~l~~g~-----~~~~~~~L~~~~----~-g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGE-----KVRVTFSLNPQG----K-EELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCC-----cEEEEEECCCCC----C-ceEEEEEEe
Confidence 999999999997653 367899998753 2 888888765
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=148.94 Aligned_cols=114 Identities=35% Similarity=0.582 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC
Q 004127 40 QYLYVRVVKAKDLPGKDV------TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~------~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
|.|+|+|++|+||+..+. .|.+||||+++++++.++|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998774 36899999999999999999999999999999999999766678999999999887
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEE
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVW 163 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (772)
++++||.+.+++.++..+. ...+||+|.+.. . |+|.+.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~----~-G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDVK----S-GRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCCC----C-ceEEEEEe
Confidence 8999999999999997542 357999998642 2 88888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=151.11 Aligned_cols=122 Identities=34% Similarity=0.499 Sum_probs=103.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-------KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
.|+|+|++|+||+..+..+.+||||++.+++. +.+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 48999999999999998889999999999764 47999999999999999999998653 56899999999998
Q ss_pred -CCceeEEEEEEccccCCCCCCC-CCCCCeEEEeecCCCC-ceeeeEEEEEEEe
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPD-SPLAPQWYRLEDRKGD-KVKTGELMLAVWM 164 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 164 (772)
++++||++.+++.++..+.+.+ .....+||+|++..+. +.. |+|.+++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVK-GHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcce-eEEEEEEee
Confidence 8999999999999998764432 3456799999976422 345 999999875
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=148.42 Aligned_cols=117 Identities=25% Similarity=0.457 Sum_probs=100.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
|.|.|++|++|+.+ +..|.+||||++.++++. .||++++++.||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999988 667899999999998764 7999999999999999999999877789999999999875
Q ss_pred CCCCcccEEEEEecCccccC-ceEeeeEeeeecCCCCcccccEEEEEEE
Q 004127 444 GGKDSRIGKVRIRLSTLETD-RVYTHSYPLLVLHPSGVRKMGEVQLAVR 491 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 491 (772)
+|++||++.+++.++..+ .....|++|.+....+ +..|+|++.+.
T Consensus 75 --~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 --RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred --CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999988753 3468999998754332 34699988875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=147.35 Aligned_cols=102 Identities=30% Similarity=0.413 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeecCCCCCeeccEEEEEecc---CCCceEEEEEEec
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------YKGTTKHFEKKSNPEWNQCFAFSKDR---IQASVLEVLVKDK 110 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~t~nP~Wne~f~f~v~~---~~~~~L~i~V~d~ 110 (772)
.|+|+|++|+||+..+ .|.+||||++++.+ ++.+|+++.+|.||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999888 58999999999832 35689999999999999999999863 3446799999999
Q ss_pred CCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 111 DVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 111 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+.. +|++||++.+++.++..++ ....|++|...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence 877 7999999999999998663 25789999764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=148.76 Aligned_cols=114 Identities=20% Similarity=0.324 Sum_probs=96.9
Q ss_pred CCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeccEEEEEec--c
Q 004127 26 GDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTKHFEKKSNPEWNQCFAFSKD--R 97 (772)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~--~ 97 (772)
.+.+++.|+. ..+.|.|+|++|+||++.+..+.+||||++++.+ .++||++++++.||+|||+|.|++. +
T Consensus 2 ~i~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~ 79 (124)
T cd08680 2 QVQIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTK 79 (124)
T ss_pred eEEEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHH
Confidence 3567888875 4458999999999999988888999999999863 3679999999999999999999984 4
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+....|.|.|||++.. ++++||.+.|+|.++.... .....||+|
T Consensus 80 L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~~~~Wy~l 124 (124)
T cd08680 80 LYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSE----EMSTKWYNL 124 (124)
T ss_pred hhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC----ccccccccC
Confidence 5678999999999988 8999999999999996542 235789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-17 Score=146.60 Aligned_cols=118 Identities=22% Similarity=0.343 Sum_probs=97.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCc
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~ 116 (772)
...|+|+|++|+||+.. +.+||||++.+++. ..+|++. ++.||.|||+|.|.+.......+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999874 47899999999984 4789874 689999999999987654446799999999988 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CceeeeEEEEEEEeee
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG--DKVKTGELMLAVWMGT 166 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~ 166 (772)
+||.+.++|.++..+. ....||+|.+..+ .... |+|.++++|..
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~-G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEW-GSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcC-cEEEEEEEEEc
Confidence 9999999999987653 3578999987642 3344 99999998853
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=149.64 Aligned_cols=116 Identities=34% Similarity=0.459 Sum_probs=99.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEecc--C
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDR--I 98 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~ 98 (772)
.|.+.+++.|+... +.|.|+|++|+||+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. .
T Consensus 2 ~G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 2 LGKLQFSLDYDFQS--NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred ccEEEEEEEEeCCC--CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 46788888888654 48999999999999998889999999999964 46799999999999999999999853 3
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
....|.|+|||++.+ ++++||++.++|.++..+ ....+|++|+
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~-----~~~~~W~~l~ 123 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLG-----HVTEEWRDLE 123 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCC-----CCcceEEEcc
Confidence 457899999999988 899999999999998654 2367999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=146.14 Aligned_cols=105 Identities=29% Similarity=0.420 Sum_probs=92.5
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC----CCceEEEEEEecCCC
Q 004127 38 QMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI----QASVLEVLVKDKDVV 113 (772)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~~L~i~V~d~~~~ 113 (772)
+.+.|+|+|++|+||+ ++.+||||++++++++.+|++++++.||.|||+|.|.+..+ ....|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4578999999999998 47899999999999999999999999999999999997543 246899999999988
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+|++||++.++|.++..+. ++.....|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 8999999999999998653 45678899999763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=147.64 Aligned_cols=112 Identities=25% Similarity=0.363 Sum_probs=97.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHG 440 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~ 440 (772)
|.|+|++|++|+.. +..|.+||||++.++ +..+||++++++.||+|||+|.|.+..+ ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 68999999999987 556889999999985 3568999999999999999999998764 56799999999874
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+|++||++.++++++..+.....|++|... ..|++++++.+
T Consensus 77 -----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~ 117 (119)
T cd04036 77 -----MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLL 117 (119)
T ss_pred -----CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEe
Confidence 688999999999999999999999999642 24888888876
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=148.68 Aligned_cols=115 Identities=31% Similarity=0.496 Sum_probs=99.5
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEecc--CC
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDR--IQ 99 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 99 (772)
|++.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++.. .+++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 56788888875 4579999999999999999889999999999952 56899999999999999999999853 33
Q ss_pred CceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 100 ASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 100 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
...|.|+|||++.+ ++++||++.++|.++..+. ....||+|.
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 56899999999988 8999999999999997653 357899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=148.45 Aligned_cols=118 Identities=26% Similarity=0.348 Sum_probs=97.8
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEE-ec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFS-KD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~-- 96 (772)
.|.+.+++.|+... +.|.|+|++|+||+..+.. +.+||||++.+.+ ++.||++++++.||+|||+|.|. +.
T Consensus 2 ~G~l~~~l~y~~~~--~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEK--KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCC--CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 46788998888655 5999999999999998875 8999999999963 46799999999999999999994 42
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+.....|.|+|||++.. +|++||++.++|.++..... .....|.+|+
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~~~~~ 127 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE---GELLVSREIQ 127 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCC---ceEEEEEecc
Confidence 33446799999999988 99999999999999965421 2256788875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=145.19 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=100.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCcee
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLI 118 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~l 118 (772)
..+|+|+|++|++|...+..|.+||||++.+++++.+|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 358999999999999999889999999999999999999999999999999999988764 6789999999988889999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCC---CCceeeeEEEEEEEee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK---GDKVKTGELMLAVWMG 165 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~ 165 (772)
|++.+++..+... ..+|++|.... ..... |+|.+++.+.
T Consensus 81 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~-G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDSQ-------TLRTLPLRKRGRDAAGEVP-GTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCCc-------CceEEEcccCCCCCCCCCC-CEEEEEEEEc
Confidence 9999999875422 45888996432 22345 9999998664
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-17 Score=147.72 Aligned_cols=116 Identities=25% Similarity=0.355 Sum_probs=99.2
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEE-ec--c
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFS-KD--R 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~--~ 97 (772)
+|.+.+++.|+.... .|.|+|++|+||++.+..|.+||||++.+.+ ++.||+++++ .||+|||+|.|. +. +
T Consensus 2 ~G~l~~sl~Y~~~~~--~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSAR--KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCCC--EEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH
Confidence 577899999986554 8999999999999999888999999988754 5789999887 999999999998 53 3
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
+....|.|+|||++.. ++++||++.++|.++.... ....|++|++
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~p 124 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLEP 124 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCCC
Confidence 4567899999999988 8999999999999996542 3678999963
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-17 Score=147.33 Aligned_cols=104 Identities=22% Similarity=0.410 Sum_probs=91.7
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEe
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFD 434 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D 434 (772)
..|.|.|+|++|+||+.+ +..|.+||||++.++ ...+||++++++.||+|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 14 DMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 348999999999999987 667889999999983 3468999999999999999999998753 5689999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
++.++ ++++||.+.++++++..+.....||+|.
T Consensus 91 ~~~~~------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFS------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCC------CCceeEEEEEecccccCCCCcceEEECc
Confidence 99865 8999999999999998777889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=144.18 Aligned_cols=115 Identities=27% Similarity=0.405 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 42 LYVRVVKAKDLPGKD-VTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 42 L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
|.|+|++|+||++.+ ..|.+||||++.++++ .++|+++++|.||.|||+|.|.+.+. ...|.|.|||.+.+ +|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4578999999999875 68999999999999999999999753 47899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC-CceeeeEEEEEEE
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG-DKVKTGELMLAVW 163 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~ 163 (772)
|.+.++++++..+. ....||+|+.... .+.+ |+|.+++.
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~-G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQ-GKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCccc-EEEEEEEE
Confidence 99999999997643 2578999987432 2234 99988864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=148.29 Aligned_cols=114 Identities=38% Similarity=0.560 Sum_probs=95.7
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
|...+++.|+. ..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~~~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDK--VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 56677777775 4458999999999999998888999999999975 57899999999999999999998632
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+....|.|+|||++.. ++++||++.++|.+.... ....||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 2457899999999988 899999999999983322 146899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-17 Score=176.61 Aligned_cols=214 Identities=19% Similarity=0.323 Sum_probs=149.7
Q ss_pred CCCcccchhhhHHHHHHH-HHHHHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHccchhHHHHHHHHHHHHh----h
Q 004127 556 VDSHMWSMRRSKANFFRI-MGVLSSLISVGKWFDQICNWKNPLTTILIHILFIILVLYPELILPTVFLYLFLIGI----W 630 (772)
Q Consensus 556 ~~~~~~s~~~l~~n~~rl-~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~~~~~~~----~ 630 (772)
+++++||..+||+|++|| +.++-.+..+.++|.+|.+|++|++|++||++|++ +|+.++++|+++..++++++ +
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r 161 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPAR 161 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 678999999999999999 55888999999999999999999999999888888 88889999999988777766 4
Q ss_pred ccccCCCCCCCCCccCC-----------------------cccc--------------------------CCCCCCCCCC
Q 004127 631 NFRWRPRHPPHMDTRLS-----------------------HAEA--------------------------AHPDELDEEF 661 (772)
Q Consensus 631 ~~~~~~~~~~~~~~~~s-----------------------~~~~--------------------------~~~~~~~~e~ 661 (772)
.++|++.+++.+++... .+|+ ..+++..++.
T Consensus 162 ~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~~~~ 241 (642)
T PF11696_consen 162 SILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEED 241 (642)
T ss_pred cccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCccC
Confidence 56777655544442110 0110 0111111111
Q ss_pred -CCCC-------------------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccCCch--------hH
Q 004127 662 -DTFP-------------------TTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPR--------AT 713 (772)
Q Consensus 662 -~~~~-------------------~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~--------~t 713 (772)
..++ .....+.-..--.++-+.+..+|+.|++++|.+||+-|.|+.+-|+ +.
T Consensus 242 ~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa 321 (642)
T PF11696_consen 242 SEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRLA 321 (642)
T ss_pred CCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHH
Confidence 0000 0000111011112244567889999999999999999999999998 34
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccC-------CCCCC-----chh-hhhhcCCCCcCC
Q 004127 714 TLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFR-------HKLPS-----VPL-NFFRRLPARSDS 770 (772)
Q Consensus 714 ~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r-------~~~p~-----~~~-~~~~r~Ps~~~~ 770 (772)
..++.+++++.++...+-.|.+-|+.|+.|++.|-++ +++|+ ++. -.|+.|||++.+
T Consensus 322 ~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 322 AILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 4556666666677777888888899999999998754 44555 222 268889998764
|
|
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=150.48 Aligned_cols=118 Identities=29% Similarity=0.444 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCe-eeeeeeecCCCCCeec
Q 004127 40 QYLYVRVVKAKDLPGKD------------------------------VTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWN 88 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~------------------------------~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wn 88 (772)
|.|.|+|++|++|+++| ..|.+||||++.+++. ..||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 78999999999999887 3567899999999985 4799999999999999
Q ss_pred cEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc--eeeeEEEEEEEe
Q 004127 89 QCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK--VKTGELMLAVWM 164 (772)
Q Consensus 89 e~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~~G~l~l~~~~ 164 (772)
|+|.|.+... .+.|.|.|||.+.+++++||.+.+++.++..+. ....|++|.+..++. .. |.|.+++.|
T Consensus 87 E~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~-~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPG-AKIRVSLQF 157 (158)
T ss_pred eEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCC-CEEEEEEEE
Confidence 9999998764 468999999999887899999999999997642 367999998765442 23 789888866
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=145.30 Aligned_cols=116 Identities=24% Similarity=0.391 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN--YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
|.|+|++|+||+. ..|.+||||++.+++ ++.+|++++++.||+|||.|.|.+.. ....|.|+|||.+.. +|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 6799999999988 578999999999984 57899999999999999999999864 367899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CceeeeEEEEEEEeee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG--DKVKTGELMLAVWMGT 166 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~ 166 (772)
|++.+++.++..... ...|++|.+..+ .... |+|.+.+.|..
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~-G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVS-GSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcc-eEEEEEEEEec
Confidence 999999999986532 468999987643 3355 99999998854
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=146.10 Aligned_cols=121 Identities=26% Similarity=0.417 Sum_probs=98.5
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCC--
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQ-- 441 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~-- 441 (772)
.|+|+|++|++|+.. |..|.+||||+|.+++..++|+++.++.||.|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999987 667889999999999999999999999999999999999987778899999999852100
Q ss_pred ---CCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEE
Q 004127 442 ---GGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAV 490 (772)
Q Consensus 442 ---~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 490 (772)
...+++++||.+.+++.++.... ..||+|......+ +..|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 00237999999999999986544 7899998654222 2468888763
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=144.36 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=86.9
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-C----C--EEEEeecccCCCCCeecceEEEEeeCC----CcEEEEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-G----Q--KWVRTRTIVDSFGPRWNEQYTWEVFDP----CTVITVGV 432 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-~----~--~~~~T~~~~~t~~P~Wne~~~~~v~~~----~~~l~i~v 432 (772)
.|+|.|++|+||+.. + .|.+||||+|++ | . +++||+++.+|+||+|||+|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 378999999999876 4 389999999997 3 2 347899999999999999999999742 35699999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
||++..+ ++++||++.++++++..++....|++|..
T Consensus 77 ~D~d~~~------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFAR------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEecccC------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9998654 78999999999999998888899999964
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=145.72 Aligned_cols=111 Identities=26% Similarity=0.426 Sum_probs=91.4
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccC-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRI- 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~- 98 (772)
|+++++..| ..+.|.|+|++|+||++.+ .|.+||||++++.+ .+.||++++++.||+|||+|.|.+...
T Consensus 1 G~l~l~~~~----~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~ 75 (119)
T cd08685 1 GQLKLSIEG----QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD 75 (119)
T ss_pred CEEEEEEEE----cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH
Confidence 345566555 3468999999999999988 78999999999975 356899999999999999999998432
Q ss_pred CCceEEEEEEecCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 99 QASVLEVLVKDKDVV--LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
....|.|+|||++.. ++++||.+.|+|.++..+ ....+||.|
T Consensus 76 ~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~-----~~~~~Wy~l 119 (119)
T cd08685 76 YQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQ-----KEISGWYYL 119 (119)
T ss_pred hCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccC-----ccccceEeC
Confidence 235789999999876 478999999999999754 235789986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=146.64 Aligned_cols=116 Identities=29% Similarity=0.450 Sum_probs=99.1
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
.|++.+++.|+. ..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 ~G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~ 79 (127)
T cd04030 2 LGRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE 79 (127)
T ss_pred CeEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHH
Confidence 367888888885 4569999999999999999889999999999963 5789999999999999999999984
Q ss_pred cCCCceEEEEEEecCCC---CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 97 RIQASVLEVLVKDKDVV---LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
++....|.|.|||.+.. ++++||++.++|.++..+. ....||+|+
T Consensus 80 ~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 80 ELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred HhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 33457899999999873 7999999999999986542 357899984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=149.31 Aligned_cols=103 Identities=29% Similarity=0.426 Sum_probs=88.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec---------------cCCC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD---------------RIQA 100 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~---------------~~~~ 100 (772)
.|.|+|++|+||+. .+|.+||||++++.+ ++.+|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 468999999999987 5789999999999999999999984 2234
Q ss_pred ceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 101 SVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 101 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
..|.|.|||++.. +|++||++.|++..+.... .....||+|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCcc
Confidence 6799999999988 9999999999999987651 2357899998764
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=145.26 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=87.3
Q ss_pred ccEEEEEEEEecCCCCCccCCC-CCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
.+.|.|.|++|+||+++ +. .|.+||||++.+.+ .+.||++++++.||+|||+|.|.+.. ....|.|.|
T Consensus 14 ~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 14 TSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred CCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 37999999999999987 54 48899999999842 36799999999999999999999865 256899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCcccc---CceEeeeEee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLET---DRVYTHSYPL 472 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~---~~~~~~~~~L 472 (772)
||++.++ ++++||.+.|+|.++.. +....+||+|
T Consensus 91 ~~~~~~~------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLK------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCc------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999765 88999999999999854 3466799987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=144.02 Aligned_cols=118 Identities=25% Similarity=0.446 Sum_probs=100.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCcee
Q 004127 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVL 282 (772)
Q Consensus 203 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~i 282 (772)
+|.|+|++|++|+.. .+||||++.++++..+|+++++ +.||.|||+|.|.+..+....|.|+|||++.. ++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 489999999999887 6899999999999999999987 99999999999998776678899999999876 78999
Q ss_pred EEEEEeccccccccC-CCCCCceeEEcccCccccCccccccccceEEEEEEE
Q 004127 283 GKCLIPLQAVQRRLD-HKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICL 333 (772)
Q Consensus 283 G~~~i~l~~l~~~~~-~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~ 333 (772)
|++.++++++..+.. ++....+||+|.... ..+..|+|++.+.+
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~-------~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK-------GGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCC-------CCccceEEEEEEEe
Confidence 999999999865322 234567999998752 23568999998876
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=145.55 Aligned_cols=115 Identities=36% Similarity=0.521 Sum_probs=98.6
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeecCCCCCeeccEEEEEec---cC
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSKD---RI 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~---~~ 98 (772)
|.+.+++.|+... +.|.|+|++|+||+..+..+.+||||++.+. +++.+|++++++.||+|||+|.|.+. .+
T Consensus 3 G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYDFQE--STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEECCCC--CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 6788888887544 5899999999999999888999999999994 36789999999999999999999742 23
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
....|.++|||++.. ++++||++.+++.++.... ....|++|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 456899999999988 8999999999999997542 367899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=142.51 Aligned_cols=116 Identities=32% Similarity=0.510 Sum_probs=98.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
|.|+|++|+||++.+..|.+||||++.+++. ..+|++++++.||.|||.|.|.+... ...|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999885 47999999999999999999998653 47899999999988 999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCC-CCceeeeEEEEEEE
Q 004127 120 RVMFDLNEVPKRIPPDSPLAPQWYRLEDRK-GDKVKTGELMLAVW 163 (772)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~ 163 (772)
++.+++.++.... .....|++|.+.. +.... |+|.+.+.
T Consensus 81 ~~~~~~~~~~~~~----~~~~~W~~L~~~~~~~~~~-G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHP----RGIDGWMNLTEVDPDEEVQ-GEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCC----CCCCcEEECeeeCCCCccc-cEEEEEEE
Confidence 9999998886431 2256899998643 22344 99988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.6e-17 Score=143.92 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=87.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~ 435 (772)
+.|.|+|++|+||+++ + .|.+||||++.+.+ .+.||++++++.||+|||+|.|.+.. ....|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 6899999999999987 5 57899999999953 35799999999999999999999875 345799999998
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
+..+ .++++||.+.|++.++..+.....||.|
T Consensus 88 ~~~~-----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8642 1478999999999999888878999976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=145.95 Aligned_cols=121 Identities=28% Similarity=0.369 Sum_probs=100.1
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC--EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCC
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIH 439 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~ 439 (772)
+|.|+|+|++|+||+..+ ...+.+||||++++++ ..+||+++.++.||.|||.|.|.+....+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 378999999999998642 2346799999999987 789999999999999999999999866889999999998764
Q ss_pred CCCCCCCCcccEEEEEecCccccCceEee-eEeeeecCCCCcccccEEEEEEEEee
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLETDRVYTH-SYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||++.+++.++..+..... ++++.. +.+..|+|+++++|.|
T Consensus 79 ------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~----~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 ------KDKLIGTAEFDLSSLLQNPEQENLTKNLLR----NGKPVGELNYDLRFFP 124 (124)
T ss_pred ------CCceeEEEEEEHHHhccCccccCcchhhhc----CCccceEEEEEEEeCC
Confidence 89999999999999987765543 444431 2335699999999854
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=143.54 Aligned_cols=113 Identities=34% Similarity=0.583 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-------
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV------- 113 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~------- 113 (772)
.|+|+|++|++|+..+..|.+||||+++++++..+|+++.++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 6899999999999999889999999999999899999999999999999999998654 56899999999841
Q ss_pred -----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEE
Q 004127 114 -----LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAV 162 (772)
Q Consensus 114 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~ 162 (772)
++++||.+.+++.++... ...||+|++..+. ..+ |+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~-G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVS-GAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEe-EEEEEEC
Confidence 689999999999987422 4699999976644 366 9998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-17 Score=143.83 Aligned_cols=101 Identities=29% Similarity=0.452 Sum_probs=89.4
Q ss_pred EEEEEEEecCCCCCccCC-CCCCcCcEEEEEECCEEEEeecccCCCCCee-cceEEEEeeCC---CcEEEEEEEeCCcCC
Q 004127 365 LELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYGQKWVRTRTIVDSFGPRW-NEQYTWEVFDP---CTVITVGVFDNGHIH 439 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~W-ne~~~~~v~~~---~~~l~i~v~D~~~~~ 439 (772)
|.|+|++|+||+.+ + ..|.+||||++.+++..+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVM---DRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcc---ccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 57899999999987 4 3578999999999999999999999999999 99999999863 468999999999865
Q ss_pred CCCCCCCCcccEEEEEecCcccc---CceEeeeEeeee
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLET---DRVYTHSYPLLV 474 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 474 (772)
++++||++.+++.++.. +.....||+|.+
T Consensus 78 ------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 88999999999999976 456789999864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=140.64 Aligned_cols=96 Identities=19% Similarity=0.328 Sum_probs=83.2
Q ss_pred cEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC--CcEEEEEEEeCCcCC
Q 004127 363 GILELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP--CTVITVGVFDNGHIH 439 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~--~~~l~i~v~D~~~~~ 439 (772)
|.|.|+|++|+||+..+... .++.+||||+|++++..+||++++++.||+|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999874321 224689999999999999999999999999999999998753 457999999999865
Q ss_pred CCCCCCCCcccEEEEEecCccccCc
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
+|++||++.++|++|..+.
T Consensus 81 ------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997653
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=140.86 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=86.7
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
+.|.|.|++|++|+.. +..||||+|++|+++.+|++++++ ||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999753 346999999999999999999884 99999999999988888899999998864
Q ss_pred CCCCCcccEEEEEecCccccCceE--eeeEeeeec
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVY--THSYPLLVL 475 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 475 (772)
+|++||++.|+|.++..+... ..||+|...
T Consensus 71 ---~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 ---WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred ---CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 899999999999999755433 789999753
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=144.47 Aligned_cols=114 Identities=22% Similarity=0.354 Sum_probs=96.8
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
|++.+++.|+.. .+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 1 GEIEFSLSYNYK--TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CeEEEEEEEeCC--CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 567888888754 459999999999999888 778999999999853 46799999999999999999999854
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 3357899999999988 8999999999999996442 25789987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=143.46 Aligned_cols=103 Identities=27% Similarity=0.374 Sum_probs=90.6
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC---EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEeC
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFDN 435 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D~ 435 (772)
.+.|.|+|++|+||+.+ +..|.+||||++.+.+ ..+||++++++.||+|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 37899999999999987 6668899999998842 468999999999999999999998752 46899999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
+.++ ++++||++.++++++..+....+|++|.
T Consensus 92 d~~~------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFS------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCC------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9865 8899999999999998888889999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=139.96 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=88.1
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~~ 443 (772)
|.|.|++|+||+.. +..+.+||||+++++++.+||++++++.||+|||.|.|.+.++ .+.|.|+|+|++
T Consensus 2 L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~------- 71 (105)
T cd04050 2 LFVYLDSAKNLPLA---KSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK------- 71 (105)
T ss_pred EEEEEeeecCCCCc---ccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC-------
Confidence 78999999999987 6678999999999999999999999999999999999999985 678999999976
Q ss_pred CCCCcccEEEEEecCccccC--ceEeeeEeeee
Q 004127 444 GGKDSRIGKVRIRLSTLETD--RVYTHSYPLLV 474 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~--~~~~~~~~L~~ 474 (772)
.+++||++.++|.++..+ .....||+|.+
T Consensus 72 --~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 72 --TGKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred --CCCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 368999999999998654 46789999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-16 Score=141.73 Aligned_cols=114 Identities=21% Similarity=0.335 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-C--Cce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLG-NYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-L--DDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~--d~~ 117 (772)
|+|+|++|+||+..+..+.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 578999999999999999999999975 68999999999887 3 589
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCC---CceeeeEEEEEE
Q 004127 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG---DKVKTGELMLAV 162 (772)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~~G~l~l~~ 162 (772)
||++.+++.++.... .....|++|..... .... |+|.+++
T Consensus 80 lG~~~i~l~~l~~~~----~~~~~~~~l~~~~~~~~~~~~-G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLK----DTGYQRLDLRKLKKSDNLSVR-GKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccC----CCccceeEeecCCCCCCceEe-eEEEEEe
Confidence 999999999997543 12467999976652 3355 9988875
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=148.27 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=93.7
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEee---------------C
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVF---------------D 423 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~---------------~ 423 (772)
.|.|+|++|+||+. ..|.+||||+|.+.+ ...||+++++|.||+|||.|.|.+. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 37899999999986 247899999999965 5689999999999999999999995 1
Q ss_pred -CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccC-ceEeeeEeeeecCCCC---------cccccEEEEEE
Q 004127 424 -PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD-RVYTHSYPLLVLHPSG---------VRKMGEVQLAV 490 (772)
Q Consensus 424 -~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~i~l~~ 490 (772)
....|.|+|||++..+ +|++||++.|++.++..+ .....||+|.....+. ....|.++|++
T Consensus 76 ~~~~~L~i~V~d~~~~~------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1257999999998754 899999999999999876 5678999996653222 12457777664
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=139.14 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=82.4
Q ss_pred eEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC-CCceEEEEEEecCCC-
Q 004127 40 QYLYVRVVKAKDLPGKDV----TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI-QASVLEVLVKDKDVV- 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~L~i~V~d~~~~- 113 (772)
|+|.|+|++|+||+..+. .+.+||||++.+++++.||++++++.||+|||.|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 689999999999998763 23589999999999999999999999999999999998543 245899999999988
Q ss_pred CCceeEEEEEEccccCCCC
Q 004127 114 LDDLIGRVMFDLNEVPKRI 132 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~ 132 (772)
+|++||++.++|.++..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999998764
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=140.87 Aligned_cols=104 Identities=37% Similarity=0.556 Sum_probs=90.8
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeeecCCCCCee-ccEEEEEeccC--CCceEEEEEEecCCC-CCc
Q 004127 42 LYVRVVKAKDLPGKDV-TGSCDPYVEVKLGNYKGTTKHFEKKSNPEW-NQCFAFSKDRI--QASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~W-ne~f~f~v~~~--~~~~L~i~V~d~~~~-~d~ 116 (772)
|.|+|++|+||+..+. .+.+||||+++++++++||++++++.||.| ||+|.|.+... ....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998874 688999999999999999999999999999 99999998642 357899999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 1234788999975
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-16 Score=142.74 Aligned_cols=123 Identities=21% Similarity=0.412 Sum_probs=103.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQ 441 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~ 441 (772)
..|.|.|++|++|+.+ .+|||.|.+++.. .||+++.++.||.|+|.|.|.+..+...+.|.||+.+...
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-- 80 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-- 80 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc--
Confidence 5899999999999875 3799999999988 5999999999999999999987777788999998655321
Q ss_pred CCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCC-------cccccEEEEEEEEeec
Q 004127 442 GGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSG-------VRKMGEVQLAVRFTCS 495 (772)
Q Consensus 442 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~f~~~ 495 (772)
.+..++++||++.|++.++..+...+.||||.+..... .+..+.|+++++|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 01236899999999999999999999999999876443 2345799999999764
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-16 Score=142.31 Aligned_cols=116 Identities=24% Similarity=0.401 Sum_probs=98.9
Q ss_pred eeEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeeeecCCCCCeeccEEEEEeccCCCceEEEEE
Q 004127 39 MQYLYVRVVKAKDLPGKDVT----------GSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLV 107 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~----------~~~dpyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V 107 (772)
.|.|+|+|++|+||...+.. +.+||||++.+++++ .+|++++++.||.|||+|.|.+.+ ...|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEE
Confidence 37899999999999988752 689999999999854 799999999999999999999974 57899999
Q ss_pred EecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 108 KDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 108 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
||.+.. ++++||.+.++|.++..+. ......|++|+.. |+|.+.+.+..
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~~-------G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEPQ-------GKLHVKIELKG 130 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccCC-------cEEEEEEEEec
Confidence 999887 8999999999999988631 1236799999742 99999987753
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=143.52 Aligned_cols=105 Identities=22% Similarity=0.287 Sum_probs=90.5
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~ 433 (772)
.+.|.|.|++|+||+.. +..+.+||||+|.+. ...+||++++++.||+|||+|.|.+... ...|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 47999999999999987 667899999999984 3568999999999999999999998642 468999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
|++.+. .+++++||.+.+++.++..+.....||+|.
T Consensus 92 ~~~~~~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKSFL----SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCccc----CCCCceEEEEEEecccccccCCccceEECc
Confidence 998641 128999999999999998877789999873
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=142.63 Aligned_cols=115 Identities=21% Similarity=0.369 Sum_probs=99.7
Q ss_pred EEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEeCCcCCCCCCCC
Q 004127 369 VLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFDNGHIHGQGGGG 445 (772)
Q Consensus 369 v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D~~~~~~~~~~~ 445 (772)
|++|+||+. ..|.+||||+|.+++..+||++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 678999985 357899999999999999999999999999999999999753 678999999999865
Q ss_pred CCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEeecc
Q 004127 446 KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSS 496 (772)
Q Consensus 446 ~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 496 (772)
+|++||++.++++++..+.....|++|.... +....|+|+++++|.|..
T Consensus 71 ~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 71 RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPPD 119 (127)
T ss_pred CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCCC
Confidence 8899999999999999888889999997643 232358999999997653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-16 Score=141.84 Aligned_cols=114 Identities=29% Similarity=0.414 Sum_probs=100.1
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC--CCceEEEEEEecCCC-CCceeEEEE
Q 004127 46 VVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI--QASVLEVLVKDKDVV-LDDLIGRVM 122 (772)
Q Consensus 46 v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~L~i~V~d~~~~-~d~~lG~~~ 122 (772)
|++|+||+. ..|.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. +|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 578999999999999999999999999999999999999653 468999999999988 899999999
Q ss_pred EEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeec
Q 004127 123 FDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQ 167 (772)
Q Consensus 123 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (772)
+++.++..+. ....|++|.+.++.... |+|.+.++|.+.
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~-~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTG-ATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCccc-EEEEEEEEEeCC
Confidence 9999998653 35789999877666566 999999998754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=143.05 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=85.9
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v 432 (772)
.+.|.|+|++|+||+.+ +..+.+||||+|.+.+ ..+||++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 15 TSQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 37899999999999987 5668899999999854 46899999999999999999998754 357899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
||++..+ ++++||++.++|++... ....+||+|.
T Consensus 92 ~d~~~~~------~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDG------ENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred EeCCCCC------CCcEeeEEEEecccccc-cCCcceEECc
Confidence 9999764 88999999999998422 2236899873
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=141.90 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=95.1
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-CEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
|+|+|++|++|+.+ +..|.+||||++.++ .+.+||++++++.||.|||.|.|.+.. .+.|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 78999999999887 667899999999996 667999999999999999999999965 789999999998864
Q ss_pred CCCCcccEEEEEecCccccCc-eEeeeEeeeecCCCCc-ccccEEEEEE
Q 004127 444 GGKDSRIGKVRIRLSTLETDR-VYTHSYPLLVLHPSGV-RKMGEVQLAV 490 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~g~-~~~G~i~l~~ 490 (772)
.+.|++||++.+++.++.... ....|++|........ .-.|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 113689999999999986443 3367999966543221 2257777654
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=144.30 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=100.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeec-CCCCCeeccEEEEEeccCC----CceEEEEEEecCCC-
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFE-KKSNPEWNQCFAFSKDRIQ----ASVLEVLVKDKDVV- 113 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~-~t~nP~Wne~f~f~v~~~~----~~~L~i~V~d~~~~- 113 (772)
.|+|+|++|++|+..+..+.+||||++++++ ++.+|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999988889999999999998 889999985 5899999999999997653 68899999999987
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEE
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELML 160 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l 160 (772)
+|++||++.+++.++..+...+......||+|..++|+. + |.|.+
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~-~-G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP-Q-GVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc-C-eEEeC
Confidence 899999999999999877543334567899999876543 3 88763
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=149.42 Aligned_cols=119 Identities=28% Similarity=0.367 Sum_probs=99.1
Q ss_pred cCCcceeeecCcC----------ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeecCCCCCeecc
Q 004127 25 TGDKLSCTYDLVE----------QMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG-----NYKGTTKHFEKKSNPEWNQ 89 (772)
Q Consensus 25 ~~~~~~~~~~~~~----------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne 89 (772)
|++.+++.|.... ..|.|.|+|++|+||+..+..+.+||||++++. .+++||++++++.||.|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 5667777777633 568999999999999999988999999999984 2578999999999999999
Q ss_pred EEEEEec---cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 90 CFAFSKD---RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 90 ~f~f~v~---~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+|.|.+. +.....|.|+|||++.+ ++++||++.+++.++.... ....|++|.+.
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~-----~~~~w~~~~~~ 139 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYG-----QAVDWMDSTGE 139 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCC-----CccccccCChH
Confidence 9999852 33456899999999988 8999999999999987543 24678887643
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-16 Score=142.58 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=99.2
Q ss_pred cEEEEEEEEecCCCCCccCC-------CCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEEe
Q 004127 363 GILELGVLSAHGLTPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFD 434 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~-------~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D 434 (772)
|.|+|.|++|+||...+... ..|.+||||++.++++. .+|++++++.||.|||+|.|.+. ....|.|.|||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d 82 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH 82 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence 78999999999998763210 13679999999998876 69999999999999999999996 45789999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCcccc--CceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLET--DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
++.++ ++++||++.++|+++.. +.....|++|. ..|+|++++.+..
T Consensus 83 ~~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 83 DAAIG------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CCCCC------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 98764 78999999999999976 56679999996 2499999998754
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-16 Score=141.82 Aligned_cols=116 Identities=31% Similarity=0.445 Sum_probs=98.0
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEecc--C
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDR--I 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~ 98 (772)
|++.+++.|+... +.|.|+|++|+||+..+ ..+.+||||++++.+ +..+|++++++.||+|||+|.|.+.. .
T Consensus 1 G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLEE--EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCCC--CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 5677888888654 58999999999999988 678999999999853 56799999999999999999999854 2
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
....|.|+|||++.. ++++||++.++|.++.... ....|++|++
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~w~~L~~ 123 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK-----GGVVWRDLEP 123 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCC-----CceEEEeCCC
Confidence 346899999999988 8999999999999997653 2468999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-17 Score=147.28 Aligned_cols=118 Identities=25% Similarity=0.259 Sum_probs=96.2
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
.|++.+++.|+-.. ..|.|+|++|+||+..+..|.+||||++++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 1 ~G~i~~sL~Y~~~~--~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 1 VGEILLSLSYLPTA--ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred CcEEEEEEEEcCCC--CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 37788999988654 48999999999999999889999999999954 2568999999999999999999984
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
++.+..|.|+|||++.. ++++||++.+..... + +...+|..+....+
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g-----~~~~hW~~ml~~~~ 126 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--G-----MGLSHWNQMLASLR 126 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--C-----hhHHHHHHHHHCCC
Confidence 35578899999999988 999999999976532 2 12456766655443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-16 Score=142.02 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=86.6
Q ss_pred ccEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEE-eeC---CCcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWE-VFD---PCTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~-v~~---~~~~l~i~v~ 433 (772)
.+.|.|+|++|+||+.. +.. |.+||||++.+. .+..||++++++.||+|||+|.|. +.. ....|.|+||
T Consensus 15 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 37999999999999987 554 889999999884 346799999999999999999994 331 2457999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCcccc--CceEeeeEeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLET--DRVYTHSYPLL 473 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~ 473 (772)
|++.++ ++++||++.++|+++.- ++....|.+|.
T Consensus 92 d~d~~~------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999865 89999999999999954 46788998875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=141.04 Aligned_cols=100 Identities=30% Similarity=0.459 Sum_probs=87.0
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccC---CCceEEEEEEecCC
Q 004127 40 QYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRI---QASVLEVLVKDKDV 112 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~~L~i~V~d~~~ 112 (772)
|.|+|+|++|+||+..+.. +.+||||++++.+ ...+|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999954 468999999999999999999987543 35789999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 113 V-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
. +|++||++.+++.++... ..|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCcccc
Confidence 8 899999999999999732 46777753
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.7e-16 Score=139.95 Aligned_cols=118 Identities=26% Similarity=0.413 Sum_probs=99.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCc
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~ 116 (772)
.|.|+|++|+||+..+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+.......|.|+|||.+.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999999889999999999875 367999999999999999999999775568899999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeec
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQ 167 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (772)
+||++.++|.++.... +......|++|.+. |+|.+.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~~-------g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDTQ-------GRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCCC-------CeEEEEEEEeee
Confidence 9999999998764331 12335689999752 889888887643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-16 Score=141.89 Aligned_cols=118 Identities=19% Similarity=0.347 Sum_probs=97.1
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC----------CcEEEEEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP----------CTVITVGVF 433 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~----------~~~l~i~v~ 433 (772)
.|+|+|++|++|+.+ |..|.+||||+|.+++...||+++++|.||.|||.|.|.+... ...|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAA---DKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCC---CCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999987 6678999999999999999999999999999999999986431 257999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEE-ecCccc---cCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRI-RLSTLE---TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i-~l~~l~---~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
|++..+ +|++||++.+ ++..+. .+.....|++|... | ...|+|.+++.+.+
T Consensus 79 d~d~~~------~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~-~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVG------KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---G-QSAGELLAAFELIE 133 (135)
T ss_pred eCcCCC------CCccceEEEeeeeeecccCCCCCCCceEEEeecC---C-CchhheeEEeEEEE
Confidence 999865 8899999987 444443 34566899999632 2 35699999998754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-16 Score=140.90 Aligned_cols=103 Identities=24% Similarity=0.372 Sum_probs=89.9
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---CCEEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEEEe
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGVFD 434 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---~~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v~D 434 (772)
.+.|.|.|++|+||+.+ +..|.+||||++.+ ++...||++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 15 ~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 15 ESTLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 37899999999999887 66788999999998 3456899999999999999999998542 24579999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
++.++ ++++||.+.+++.++..+.....|++|.
T Consensus 92 ~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFS------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCc------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99865 8899999999999998888889999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=140.95 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=89.5
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC----EEEEeecccCCCCCeecceEEEEeeC---CCcEEE
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQ----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVIT 429 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~ 429 (772)
.+..+.|.|.|++|+||+++ +..|.+||||++.+ ++ .++||++++++.||+|||+|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 34558999999999999988 66688999999998 22 47899999999999999999999874 467899
Q ss_pred EEEEeCCcCCCCCCCCCCcccEEEEEecCccccC-ceEeeeEee
Q 004127 430 VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD-RVYTHSYPL 472 (772)
Q Consensus 430 i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~-~~~~~~~~L 472 (772)
|.|||++.++ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998764 889999999999999544 457889875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-16 Score=140.39 Aligned_cols=103 Identities=18% Similarity=0.339 Sum_probs=88.9
Q ss_pred CccEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVG 431 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~ 431 (772)
..+.|.|+|++|+||+.+ + ..|.+||||+|.+.+ ...||++++++.||+|||+|.|.+... ...|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 12 KTGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 347999999999999987 4 567899999998832 358999999999999999999998752 5689999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
|||++.++ ++++||.+.+++.++..+.....||+|
T Consensus 89 v~d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc------CCceeeEEEEecccccccCCCccEEEC
Confidence 99999765 889999999999999777777899986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=139.55 Aligned_cols=99 Identities=25% Similarity=0.412 Sum_probs=85.4
Q ss_pred cEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEEEe
Q 004127 363 GILELGVLSAHGLTPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGVFD 434 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v~D 434 (772)
|.|+|+|++|++|+.. +.. |.+||||+|.+. ...++|+++++|+||+|||.|.|.+.. ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 6899999999999987 666 889999999883 346899999999999999999998864 35689999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
++.++ +|++||++.+++.++... ..|+++.
T Consensus 78 ~d~~~------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99875 899999999999999744 4677764
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-16 Score=139.82 Aligned_cols=119 Identities=29% Similarity=0.371 Sum_probs=97.9
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-C
Q 004127 39 MQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN--YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-L 114 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~ 114 (772)
+|.|+|+|++|+||+..+ ..+.+||||++.+++ ...+|+++.++.||.|||.|.|.+.. ..+.|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999655 356799999999998 78999999999999999999999874 468999999999988 9
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
|++||.+.+++.++...... ...|+.+.. .+ +.. |+|.+++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~~-~~-k~~-G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLLR-NG-KPV-GELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhhc-CC-ccc-eEEEEEEEeC
Confidence 99999999999999866321 123445542 23 334 9999999874
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-16 Score=142.37 Aligned_cols=101 Identities=31% Similarity=0.344 Sum_probs=86.9
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDV--TGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD- 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~- 96 (772)
|++.+++.|.-. .+.|.|+|++|+||...+. .+.+||||++++.. .++||++++++.||+|||+|.|.+.
T Consensus 2 Gel~~sL~Y~~~--~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 2 GEVLLSISYLPA--ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CEEEEEEEEeCC--CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH
Confidence 667888888754 4589999999999999873 35599999999976 2568999999999999999999984
Q ss_pred -cCCCceEEEEEEecCCC-CCceeEEEEEEccc
Q 004127 97 -RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNE 127 (772)
Q Consensus 97 -~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~ 127 (772)
++....|.|+|||++.+ ++++||++.+.+..
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 34567899999999998 99999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=143.61 Aligned_cols=95 Identities=24% Similarity=0.430 Sum_probs=82.0
Q ss_pred EEEEEEEEecCCCCCccC-----------CCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC--CcEEEE
Q 004127 364 ILELGVLSAHGLTPMKTK-----------DGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP--CTVITV 430 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~-----------~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~--~~~l~i 430 (772)
.|.|+|++|+||+.++.. +..+.+||||+|.++++..||++++++.||+|||+|.|++..+ .+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999998522 1235799999999999999999999999999999999998754 578999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCc
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
+|||+|..+ +|++||++.+++.++....
T Consensus 81 ~v~D~d~~~------~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVG------NDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCC------CCCEEEEEEEeHHHhccCC
Confidence 999999865 8999999999999986543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=137.63 Aligned_cols=107 Identities=24% Similarity=0.374 Sum_probs=92.8
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeCCC----CCcEEEEEEEcc
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF----EEPLILTVEDRV 274 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~----~~~l~i~V~d~d 274 (772)
++.+.|+|+|++|++|+ .+.+||||++++++++++|+++++ +.||.|||.|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 35678999999999998 467999999999999999999876 999999999999985543 457999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004127 275 APNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311 (772)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 311 (772)
..+++++||++.++|+++... +.+....+|++|..+
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888899999999999999753 455678899999753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=142.40 Aligned_cols=108 Identities=28% Similarity=0.454 Sum_probs=91.2
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC-CCceEEEE
Q 004127 42 LYVRVVKAKDLPGKDVT--------------GSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI-QASVLEVL 106 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~--------------~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~L~i~ 106 (772)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ..+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998744 3689999999999999999999999999999999997432 35789999
Q ss_pred EEecCCC-CCceeEEEEEEccccCCCCCCC--CCCCCeEEEeecCC
Q 004127 107 VKDKDVV-LDDLIGRVMFDLNEVPKRIPPD--SPLAPQWYRLEDRK 149 (772)
Q Consensus 107 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~ 149 (772)
|||++.. +|++||.+.+++.++....... -...+.|+.|.+..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999987653210 02457899998765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=142.90 Aligned_cols=102 Identities=30% Similarity=0.500 Sum_probs=90.2
Q ss_pred CcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eeeeeeeecCCCCC
Q 004127 35 LVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----------------------------YKGTTKHFEKKSNP 85 (772)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----------------------------~~~kT~~~~~t~nP 85 (772)
..++.+.|.|+|++|+||.+.|..|.+||||++.+++ +..+|++++++.||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 4577899999999999999999999999999999964 23689999999999
Q ss_pred eeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 86 EWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 86 ~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+|||+|.|.+.++....|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 99999999998766789999999997 89999999999999732 25789987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=137.79 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=88.4
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEE-eeC---CCcEEEEEEEe
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWE-VFD---PCTVITVGVFD 434 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~-v~~---~~~~l~i~v~D 434 (772)
.+.|.|+|++|+||+.. +..|.+||||++.+. .++.||+++++ .||+|||+|.|+ +.. ....|.|.|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 37899999999999987 566889999998772 34689999888 999999999998 543 35789999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 91 ~~~~~------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 91 VERMR------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcc------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99865 8999999999999998888889999985
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=137.57 Aligned_cols=94 Identities=30% Similarity=0.346 Sum_probs=83.7
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEec-cCCCceEEEEEEecCCC-
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD-RIQASVLEVLVKDKDVV- 113 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~~L~i~V~d~~~~- 113 (772)
.+.++.|.|+|++|++|+. +..+.+||||+++++++++||++++++.||+|||+|.|... ......|+|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4667899999999999985 56788999999999999999999999999999999999753 23568999999999998
Q ss_pred CCceeEEEEEEccccCC
Q 004127 114 LDDLIGRVMFDLNEVPK 130 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~ 130 (772)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997763
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=138.89 Aligned_cols=105 Identities=22% Similarity=0.214 Sum_probs=87.4
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C-E--EEEeecccCCCCCeecceEEEEeeC---CCcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q-K--WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~-~--~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~ 431 (772)
+..+.|.|.|++|+||+.. +..|.+||||+|.+. + + +.||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~---~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWD---NGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 3347899999999999987 667899999999882 2 2 4689999999999999999999875 35789999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||+|.++ ++++||++.|+... .++..++|..+...
T Consensus 89 V~~~d~~~------~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 89 VAESTEDG------KTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred EEeCCCCC------CCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 99999865 89999999998765 44556888887654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=137.61 Aligned_cols=95 Identities=24% Similarity=0.386 Sum_probs=84.0
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeCC
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDNG 436 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~~ 436 (772)
....|.|+|+|++|++|+. +..|.+||||+|+++++.+||++++++.||+|||+|.|.... ..+.|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4566999999999999974 566889999999999999999999999999999999997543 4779999999999
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccC
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETD 463 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~ 463 (772)
.++ +|++||++.++|.....+
T Consensus 100 ~~s------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC------CCCeeEEEEEEecCCcee
Confidence 875 899999999999977654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=143.75 Aligned_cols=106 Identities=21% Similarity=0.336 Sum_probs=90.2
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeC----CCcEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITV 430 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i 430 (772)
...|.|.|+|++|+||+.. +..|.+||||+|.+ +...+||++++++.||.|||.|.|.+.. ....|.|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~---d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 24 PSTGELHVWVKEAKNLPAL---KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred CCCceEEEEEEeeeCCCCC---CCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 3558999999999999987 66789999999988 2356899999999999999999998643 2457999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
+|||++.++ ++++||.+.+++.++........|+.+.+
T Consensus 101 ~V~d~d~~~------~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 101 TVWDHDKLS------SNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EEEeCCCCC------CCceEEEEEEeCCccccCCCccccccCCh
Confidence 999999865 89999999999999976666688887753
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=162.30 Aligned_cols=284 Identities=21% Similarity=0.295 Sum_probs=176.8
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCee--eeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCC
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA--SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAP 276 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~ 276 (772)
|..-.++|.|++|-+|.+.|.+|++|||+++.+|++. -+...+.+ |+||+|++.|++....+....+.+.|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 4555788999999999999999999999999999876 45667776 99999999999999988888999999999999
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCceeEEcccC---------c-------cccCccccccccceEEEEEEEcCCccc
Q 004127 277 NKDEVLGKCLIPLQA-VQRRLDHKPVNTRWFNLEKH---------V-------IVDGEKKETKFSSRIHLRICLDGGYHV 339 (772)
Q Consensus 277 ~~d~~iG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~---------~-------~~g~~~~~~~~~G~l~l~i~~~~~~~~ 339 (772)
+.|+.||+..++|.. .......+....+.|...+. . ..++. ..--+.+.. ..+.+.|....
T Consensus 689 ~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i-~~P~~~~e~-~~i~~~g~~~~ 766 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGI-PRPYYSYEV-SAIKWKGESDI 766 (1105)
T ss_pred cccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCC-CCCeecCCc-ceEEecChhhh
Confidence 999999999999875 22222222223333322211 0 00000 000000000 11111111000
Q ss_pred c-------------------------------CCCc---ccCCCCCcccc----cc------------------ccCCcc
Q 004127 340 L-------------------------------DEST---HYSSDLRPTAK----QL------------------WKPSIG 363 (772)
Q Consensus 340 ~-------------------------------~~~~---~~~~~~~p~~~----~~------------------~~~~~g 363 (772)
. .+.. ...++..|.-+ +. ..+..-
T Consensus 767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~ 846 (1105)
T KOG1326|consen 767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKY 846 (1105)
T ss_pred hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhe
Confidence 0 0000 00001111100 00 012334
Q ss_pred EEEEEEEEecCCCCCccCCCC--CCcCcEEEEEEC-C--EEEEeecccCCC----CCeecceEEEEee------------
Q 004127 364 ILELGVLSAHGLTPMKTKDGR--GTTDAYCVAKYG-Q--KWVRTRTIVDSF----GPRWNEQYTWEVF------------ 422 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~--g~~dpyv~v~~~-~--~~~~T~~~~~t~----~P~Wne~~~~~v~------------ 422 (772)
.++|.|..-.+....+. ++. ..+|-||+-.+- . ++.+|.+.++++ |-.|.-.|.|.-.
T Consensus 847 ~lrviiWnt~~v~l~dd-~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke 925 (1105)
T KOG1326|consen 847 ELRVIIWNTDKVRLNDD-EITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKE 925 (1105)
T ss_pred eEEEEEeeccceeecCc-cceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhh
Confidence 67777777766665432 232 348999998773 3 347787776544 6666443333110
Q ss_pred -----C-----CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccc----------------------cCceEeeeE
Q 004127 423 -----D-----PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE----------------------TDRVYTHSY 470 (772)
Q Consensus 423 -----~-----~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~----------------------~~~~~~~~~ 470 (772)
+ .-..|.|+|||.|.++ +|++||..+++|+++. ..+.+..|+
T Consensus 926 ~~ws~dete~k~p~rl~iqiWD~d~fs------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWw 999 (1105)
T KOG1326|consen 926 YSWSLDETEFKIPARLIIQIWDNDKFS------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWW 999 (1105)
T ss_pred hccccccccccCchheEEEecccCccC------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccc
Confidence 0 1245999999999987 9999999999999872 233567899
Q ss_pred eeeecCCCCcccccEEEEEEEE
Q 004127 471 PLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 471 ~L~~~~~~g~~~~G~i~l~~~f 492 (772)
|+.........-+|.+++++.+
T Consensus 1000 P~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1000 PCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred eeeecCCCcceecceeeeehhh
Confidence 9998743333347999988875
|
|
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=140.99 Aligned_cols=91 Identities=36% Similarity=0.531 Sum_probs=85.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
.|.|+|+|++|+||+..+. +.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 4789999999999998887 8999999999999999999999999999999999999876 78899999999988 8999
Q ss_pred eEEEEEEccccCCC
Q 004127 118 IGRVMFDLNEVPKR 131 (772)
Q Consensus 118 lG~~~i~l~~l~~~ 131 (772)
||.+.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999999765
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.9e-16 Score=142.03 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=86.8
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~ 431 (772)
+..+.|.|.|++|+||+.++.. ..+.+||||+|.+.. .+.||++++++.||+|||.|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~-~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLK-LLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCCeEEEEEEEecCCCccccC-CCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 3448999999999999988321 234499999999843 24699999999999999999999885 35679999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||+|.++ ++++||.+.+++.. .|...++|..+...
T Consensus 91 V~d~d~~~------~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 91 VLNQDSPG------QSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred EEeCCCCc------CcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 99999875 89999999999975 45555788877653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=137.46 Aligned_cols=104 Identities=29% Similarity=0.393 Sum_probs=92.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecC-CCCCeeccEEEEEeccC---CCceEEEEEEecCCC-C
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEK-KSNPEWNQCFAFSKDRI---QASVLEVLVKDKDVV-L 114 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~---~~~~L~i~V~d~~~~-~ 114 (772)
|.|.|+|++|+||+..+..+.+||||+++++++..+|+++.+ +.||+|||+|.|.+... ....|.|+|||.+.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888889999999999998889998874 89999999999999775 357899999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
|++||++.+++.++..+. ....|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999998653 24789999875
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=139.28 Aligned_cols=112 Identities=24% Similarity=0.314 Sum_probs=94.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeccc-CCCCCeecceEEEEeeCC-----CcEEEEEEEeCCc
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIV-DSFGPRWNEQYTWEVFDP-----CTVITVGVFDNGH 437 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~-~t~~P~Wne~~~~~v~~~-----~~~l~i~v~D~~~ 437 (772)
|+|+|++|++|+.. +..+.+||||+|++++ ...+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 2 L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 2 LEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred EEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 78999999999987 5668999999999988 889999986 589999999999999876 5889999999987
Q ss_pred CCCCCCCCCCcccEEEEEecCccccCce-----EeeeEeeeecCCCCcccccEEEE
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLETDRV-----YTHSYPLLVLHPSGVRKMGEVQL 488 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 488 (772)
++ ++++||.+.+++.++..+.. ...||+|.... | +..|.|++
T Consensus 79 ~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 79 SL------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CC------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 64 89999999999999975543 36899998643 2 34588763
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=170.80 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=95.2
Q ss_pred CCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc
Q 004127 384 RGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET 462 (772)
Q Consensus 384 ~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~ 462 (772)
.+++||||+|.++++ ..||++++++.||+|||+|.|.+.++...|.|+|+|+|.+ ++++||.+.|++.++..
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~-------gaD~IG~a~IPL~~L~~ 146 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVF-------GAQIIGTAKIPVRDIAS 146 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCcc-------CCceeEEEEEEHHHcCC
Confidence 357899999999876 4699999999999999999999999888999999999987 46899999999999999
Q ss_pred CceEeeeEeeeecCCCCcccccEEEEEEEEeecch
Q 004127 463 DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSL 497 (772)
Q Consensus 463 ~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 497 (772)
|+....|++|.+...+..+..|+|+++++|.|...
T Consensus 147 Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 147 GERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCceEEEEEccccCCCCCCCCcEEEEEEEEEEccc
Confidence 99999999998876544555689999999988643
|
|
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=136.87 Aligned_cols=113 Identities=23% Similarity=0.370 Sum_probs=95.5
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC---EEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIH 439 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~ 439 (772)
.++|.|++|++|+.+ +..|.+||||++.+++ ..+||++++++.||.|||+|.|.+... ...|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKAD---SSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCC---CCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence 588999999999987 6678999999998864 358999999999999999999999874 678999999999764
Q ss_pred CCCCCCCCcccEEEEEecCcccc---CceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLET---DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
++++||++.+++.++.. +.....|++|.. .|++++.+.+.
T Consensus 79 ------~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--------~g~i~l~~~~~ 121 (126)
T cd04043 79 ------KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--------QGRLLLRVSME 121 (126)
T ss_pred ------CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--------CCeEEEEEEEe
Confidence 89999999999987632 445678999853 38888888764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=140.70 Aligned_cols=91 Identities=32% Similarity=0.552 Sum_probs=84.2
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
|.|+|.|++|+||+.. +. +.+||||+++++++.+||++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 2 G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~--- 74 (145)
T cd04038 2 GLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS--- 74 (145)
T ss_pred eEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC---
Confidence 7899999999999876 54 7899999999999999999999999999999999999999899999999999875
Q ss_pred CCCCCcccEEEEEecCccccC
Q 004127 443 GGGKDSRIGKVRIRLSTLETD 463 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~ 463 (772)
+|++||.+.+++.++...
T Consensus 75 ---~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ---KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ---CCCEEEEEEEEHHHhhhh
Confidence 899999999999998543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=135.92 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=89.9
Q ss_pred CccEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVF 433 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~ 433 (772)
..+.|.|.|++|+||+.+ + ..+.+||||++.+. ....+|++++++.||+|||.|.|.+... ...|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 347899999999999987 4 46789999999983 3457999999999999999999998753 468999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
|++..+ ++++||++.++|+++........|++|.
T Consensus 89 d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998754 7899999999999998877778999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-16 Score=143.03 Aligned_cols=118 Identities=31% Similarity=0.415 Sum_probs=98.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
|++.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 2 GELLLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CeEEEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 67788888875 4558999999999999999889999999999853 25789999999999999999999853
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
.....|.|+|||++.+ ++++||++.+++... + ....+|++|....|+
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~-----~~~~~w~~l~~~~~~ 127 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--G-----SGGHHWKEVCNPPRR 127 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcCC--C-----chHHHHHHHHhCCCC
Confidence 3356799999999998 999999999999872 2 225788888766544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=137.52 Aligned_cols=104 Identities=26% Similarity=0.410 Sum_probs=92.9
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccC-CCCCeecceEEEEeeCC----CcEEEEEEEeCCc
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD-SFGPRWNEQYTWEVFDP----CTVITVGVFDNGH 437 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~~P~Wne~~~~~v~~~----~~~l~i~v~D~~~ 437 (772)
|.|.|.|++|+||+.. +..+.+||||+|++++..++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6799999999999987 56688999999999999999999875 89999999999999876 5789999999998
Q ss_pred CCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
++ ++++||.+.+++.++..+.....|++|...
T Consensus 78 ~~------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 78 FS------DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CC------CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 65 889999999999999877777899998753
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=139.29 Aligned_cols=106 Identities=27% Similarity=0.384 Sum_probs=91.7
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeecCCCCCeeccEEEEEec
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------YKGTTKHFEKKSNPEWNQCFAFSKD 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~t~nP~Wne~f~f~v~ 96 (772)
+|.+.+++.|+. ....|.|+|++|++|+..+..+.+||||++++.+ .+++|+++++|.||+|||+|.|.+.
T Consensus 2 ~G~l~~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 79 (133)
T cd04009 2 YGVLTVKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVP 79 (133)
T ss_pred ceEEEEEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEec
Confidence 466777777765 4568999999999999988889999999999963 4689999999999999999999986
Q ss_pred cC----CCceEEEEEEecCCC-CCceeEEEEEEccccCCC
Q 004127 97 RI----QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 97 ~~----~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 131 (772)
.. ....|.|+|||++.. ++++||++.++|.++..-
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 42 356899999999998 799999999999999754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-16 Score=142.39 Aligned_cols=119 Identities=23% Similarity=0.373 Sum_probs=96.5
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
+.+.+++.|+.. .+.|.|+|++|+||+..+..|.+||||++.+.+ .++||++++++.||+|||+|.|.+.
T Consensus 2 ~ei~~sL~Y~~~--~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~ 79 (138)
T cd08408 2 PELLLGLEYNAL--TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF 79 (138)
T ss_pred CeEEEEeEEcCC--CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH
Confidence 566788888754 459999999999999999889999999999953 2469999999999999999999985
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
++.+..|.|+|||.+.. ++++||++.+++...-.+ ...+|+.+...++.
T Consensus 80 ~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~~ 129 (138)
T cd08408 80 QLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKGQ 129 (138)
T ss_pred HhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCCC
Confidence 35567999999999988 999999999988744221 13567777655443
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-16 Score=141.73 Aligned_cols=116 Identities=27% Similarity=0.405 Sum_probs=95.0
Q ss_pred CcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--CC
Q 004127 27 DKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR--IQ 99 (772)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 99 (772)
+.+++.|+ ...+.|.|+|++|+||++.+..|.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. ..
T Consensus 2 i~~~l~y~--~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~ 79 (133)
T cd08384 2 ILVSLMYN--TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLA 79 (133)
T ss_pred EEEEEEEc--CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhC
Confidence 34566665 45679999999999999999889999999999964 36799999999999999999999853 34
Q ss_pred CceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 100 ASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 100 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
...|.|+|||++.. ++++||++.+++... + +...+|+++...++.
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~-----~~~~~W~~~l~~~~~ 125 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--G-----ERLRHWLDCLKNPDK 125 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCC--C-----chHHHHHHHHhCCCC
Confidence 57899999999988 899999999999752 1 124678888665543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=138.15 Aligned_cols=115 Identities=32% Similarity=0.452 Sum_probs=99.8
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccC-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRI- 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~- 98 (772)
|.+.++++|.. +.|+|+|++|+||+..+..+.+||||++.+.+ ++++|++++++.||.|||+|.|.+...
T Consensus 2 g~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 2 GRIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred cEEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 56778877775 78999999999999988888999999999974 578999999999999999999998653
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
....|.|+|||++.. ++++||++.+++.++... ....||+|.+.+
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 356899999999987 899999999999999754 257899998765
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=133.36 Aligned_cols=104 Identities=25% Similarity=0.361 Sum_probs=92.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|+|+|++|++|+..+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+... .+.|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 68999999999999998889999999999987 578999999999999999999988764 47899999999988 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
||++.+++.++..+. ...||.|.+.+.
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999998762 367888887653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-16 Score=141.58 Aligned_cols=119 Identities=23% Similarity=0.361 Sum_probs=95.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--c
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD--R 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~ 97 (772)
|++.+++.|.. ..+.|.|+|++|+||+..+..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+. +
T Consensus 1 G~i~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~ 78 (135)
T cd08410 1 GELLLSLNYLP--SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE 78 (135)
T ss_pred CcEEEEEEECC--CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH
Confidence 56788888874 4469999999999999999889999999999832 3579999999999999999999984 3
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
.....|.|+|||++.. ++++||++.+....... +...+|+.|....+.
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~~~~ 127 (135)
T cd08410 79 LENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNSQRT 127 (135)
T ss_pred hCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhCCCC
Confidence 3345799999999988 99999999866533221 124678888776544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-15 Score=133.55 Aligned_cols=118 Identities=28% Similarity=0.346 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
+|.|+|++|+ |...+..+.+||||+++++++ ..+|++++++.||.|||.|.|.+.+ .+.|.|+|||++.. +|++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6999999999 554554788999999999987 8999999999999999999999864 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCC--CCceeeeEEEEEE
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK--GDKVKTGELMLAV 162 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~ 162 (772)
|++.++|.++.............|++|.... +.... |+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKV-GELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceee-eeEEEEe
Confidence 9999999999865432222234689998654 12344 9998765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=135.92 Aligned_cols=117 Identities=22% Similarity=0.330 Sum_probs=92.7
Q ss_pred EEEEEEEecC--CCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeCC---------CcEE
Q 004127 365 LELGVLSAHG--LTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFDP---------CTVI 428 (772)
Q Consensus 365 l~v~v~~a~~--L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~~---------~~~l 428 (772)
..++|..|++ |+.. +..+.+||||++++ +.++.||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3455556666 6665 55688999999986 34679999999999999999999999654 3569
Q ss_pred EEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 429 TVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 429 ~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
.|+|||.+.+. .+|++||++.++|..+..+.....|++|.... ....|.++++++.
T Consensus 81 ~~~V~d~~~f~-----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~ 136 (155)
T cd08690 81 KFEVYHKGGFL-----RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRL 136 (155)
T ss_pred EEEEEeCCCcc-----cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEe
Confidence 99999998753 27999999999999998776677899987321 1246899999987
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=134.95 Aligned_cols=103 Identities=29% Similarity=0.388 Sum_probs=91.5
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQ 441 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~ 441 (772)
|.|+|.|++|+||+.. +..|.+||||+|.+++ ..++|+++.++.||.|||.|.|++..+.+.|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6799999999999987 5668999999999977 468999999999999999999999888889999999999865
Q ss_pred CCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 442 GGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 442 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+|++||++.+++.++..+ ....||-|.+.
T Consensus 76 ----~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ----KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ----CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 889999999999999766 45788888764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=141.43 Aligned_cols=118 Identities=28% Similarity=0.431 Sum_probs=96.3
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG--N---YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~---~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
.|++.+++.|+.. .+.|.|+|++|+||+..+..|.+||||++++. + .+.+|++++++.||.|||+|.|.+.
T Consensus 1 ~G~l~~sl~y~~~--~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~ 78 (136)
T cd08405 1 RGELLLSLCYNPT--ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE 78 (136)
T ss_pred CcEEEEEEEEcCC--CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence 3678888888854 45899999999999998888999999999983 2 3578999999999999999999974
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
......|.|+|||++.+ ++++||++.+++.+... ...+|+++...++
T Consensus 79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~ 126 (136)
T cd08405 79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPR 126 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCC
Confidence 33356899999999988 89999999999987521 2456666655543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=137.72 Aligned_cols=117 Identities=22% Similarity=0.347 Sum_probs=94.4
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
+|++.+++.|+.. .+.|.|+|++|+||+..+ .+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.
T Consensus 1 ~G~i~~sl~y~~~--~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~ 77 (137)
T cd08409 1 LGDIQISLTYNPT--LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR 77 (137)
T ss_pred CcEEEEEEEECCC--CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH
Confidence 3678888888854 469999999999999888 78899999999864 3678999999999999999999984
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
++....|.|+|||.+.. ++++||++.+.......+. ...+|..+...
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~~ 125 (137)
T cd08409 78 QLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLSK 125 (137)
T ss_pred HhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHhC
Confidence 34557899999999988 9999999999865443331 13456665544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=140.78 Aligned_cols=117 Identities=30% Similarity=0.363 Sum_probs=95.9
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
|++.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 66788888875 4469999999999999999889999999999953 35789999999999999999999853
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
.....|.|+|||++.. +|++||++.+++...- ....+|+++...++
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~~~~~ 126 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG-------AELRHWSDMLASPR 126 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCC-------hHHHHHHHHHhCCC
Confidence 2345899999999988 8999999999997532 12467777766543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-15 Score=132.02 Aligned_cols=111 Identities=32% Similarity=0.469 Sum_probs=94.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+.....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999987 457999999999999999999999765678999999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEE
Q 004127 120 RVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELM 159 (772)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~ 159 (772)
++.+++.++..+. ....|++|.+..+.. . |.|.
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~-~-~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQGGGK-L-GAVF 113 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCCCcc-C-ceEE
Confidence 9999999987652 257899998764432 2 6664
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-15 Score=138.51 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=87.3
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--CE---EEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--QK---WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~~---~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~ 433 (772)
.+.|.|.|++|+||+.+ |..|.+||||++.+. ++ ..||++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 36899999999999987 667899999999883 32 4789999999999999999999874 3567999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|++.++ ++++||++.+++.. .+....+|++|...
T Consensus 91 d~d~~~------~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 91 DSDRVT------KNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred ECCCCC------CCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 999875 89999999999998 34456889988653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-15 Score=135.66 Aligned_cols=103 Identities=26% Similarity=0.394 Sum_probs=89.8
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCC--CcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDP--CTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~--~~~l~i~v~D~ 435 (772)
+.|.|+|++|++|+.. +..+.+||||+|.+.+ ..+||++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 6899999999999987 5567899999999953 568999999999999999999998754 56899999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+..+ ++++||.+.++++++... ....||+|.+.
T Consensus 90 ~~~~------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 90 DRTT------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCC------CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8764 889999999999999754 56899999764
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=131.63 Aligned_cols=116 Identities=25% Similarity=0.354 Sum_probs=94.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeeeecCCCCCee-ccEEEEEeccCCCceEEEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------------YKGTTKHFEKKSNPEW-NQCFAFSKDRIQASVLEVL 106 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------------~~~kT~~~~~t~nP~W-ne~f~f~v~~~~~~~L~i~ 106 (772)
...|++++|+||+ .+..|.+||||++.+.+ ++++|++++++.||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 67789999999999953 3689999999999999 9999999853 5789999
Q ss_pred EEecCCC-C---CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEE
Q 004127 107 VKDKDVV-L---DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAV 162 (772)
Q Consensus 107 V~d~~~~-~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~ 162 (772)
|||++.. + +++||++.+++.++..... ......||+|...... .+. |+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~-G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVS-GQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEE-EEEEEEe
Confidence 9997653 2 7999999999999976632 2336689999876533 366 9998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=136.31 Aligned_cols=102 Identities=32% Similarity=0.508 Sum_probs=90.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeeecCCCCCeeccEEEEEeccC---------------CCce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLG----NYKGTTKHFEKKSNPEWNQCFAFSKDRI---------------QASV 102 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~~~---------------~~~~ 102 (772)
|+|+|++|+||+.. ..+.+||||+++++ +++++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 67899999999998 6789999999999999999999998654 4578
Q ss_pred EEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 103 LEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 103 L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
|.|+|||.+.. ++++||++.+++.++.... ....||+|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999988 9999999999999987542 257899998875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.4e-15 Score=131.12 Aligned_cols=111 Identities=32% Similarity=0.435 Sum_probs=94.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~~~~ 442 (772)
|+|.|++|++|+.. +..|.+||||+|.+++ ..++|+++.++.||.|||+|.|.+.+ ..+.+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 47899999999987 5568899999999965 45899999999999999999999987 5688999999999764
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQ 487 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~ 487 (772)
++++||++.+++.++..+.....|++|... |....|.+.
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~ 113 (115)
T cd04040 75 ---KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVF 113 (115)
T ss_pred ---CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEE
Confidence 899999999999999988888999999753 333446654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=135.75 Aligned_cols=118 Identities=26% Similarity=0.329 Sum_probs=95.0
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
|++.+++.|.. ..+.|+|+|++|++|++.+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+..
T Consensus 1 g~l~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (134)
T cd08403 1 GELMFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN 78 (134)
T ss_pred CeEEEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH
Confidence 56778888884 5579999999999999999889999999999853 35789999999999999999998743
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
.....|.|+|||++.. ++++||++.+++.... .....|+++...++.
T Consensus 79 ~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~~~~ 126 (134)
T cd08403 79 VDNVSLIIAVVDYDRVGHNELIGVCRVGPNADG-------QGREHWNEMLANPRK 126 (134)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHCCCC
Confidence 3345799999999998 8999999999876321 124567777655443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=132.75 Aligned_cols=118 Identities=21% Similarity=0.322 Sum_probs=94.3
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeeeecCCCCCeeccEEEEEeccC--------CCceEEEE
Q 004127 42 LYVRVVKAKD--LPGKDVTGSCDPYVEVKL--G---NYKGTTKHFEKKSNPEWNQCFAFSKDRI--------QASVLEVL 106 (772)
Q Consensus 42 L~V~v~~a~~--L~~~~~~~~~dpyv~v~~--~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~--------~~~~L~i~ 106 (772)
..++|..|++ |+..+..+.+||||++++ . .++.||+++++|.||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 667776788999999997 2 2689999999999999999999998542 24679999
Q ss_pred EEecCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 107 VKDKDVV--LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 107 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
|||++.+ +|++||++.++|..+..+. ....|++|.+.. +... |+|.+.+.+..
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~-----~~~~~~~L~~~~-k~~G-g~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC-----EIHESVDLMDGR-KATG-GKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC-----cceEEEEhhhCC-CCcC-CEEEEEEEecC
Confidence 9999886 7999999999999997653 245799987532 2344 99999997753
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=134.76 Aligned_cols=106 Identities=27% Similarity=0.342 Sum_probs=88.8
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeecccCCCCCeecceEEEEeeCC---CcEEEE
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITV 430 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i 430 (772)
.+..|.|.|.|++|++|+.+ +..|.+||||+|.++ + ...+|++++++.||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcc---cCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 34558999999999999987 667899999999984 2 347899999999999999999998743 347999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+|||++.++ +|++||++.+++... +....+|+++...
T Consensus 88 ~v~d~~~~~------~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 88 TVLDYDRIG------KNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred EEEeCCCCC------CCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 999999875 899999999999875 4456889888654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=134.18 Aligned_cols=92 Identities=17% Similarity=0.275 Sum_probs=80.7
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-------CEEEEeecccCCCCCeecceEEEEeeCC-----CcEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-------QKWVRTRTIVDSFGPRWNEQYTWEVFDP-----CTVIT 429 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-------~~~~~T~~~~~t~~P~Wne~~~~~v~~~-----~~~l~ 429 (772)
.+.|.|.|++|++|+.+ +..|.+||||+|.+. ...+||+++++|.||+|||.|.|.+... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 36899999999999987 666899999999884 3468999999999999999999998752 45899
Q ss_pred EEEEeCCcCCCCCCCCCCcccEEEEEecCcccc
Q 004127 430 VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET 462 (772)
Q Consensus 430 i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~ 462 (772)
|+|||++.++ ++++||++.++|+++..
T Consensus 92 ~~V~d~d~~~------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC------CCcEeEEEEEeHHHCCc
Confidence 9999999865 79999999999999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=132.68 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=85.1
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeecccCCCCCeecceEEEEeeC--C-CcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIVDSFGPRWNEQYTWEVFD--P-CTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~---~~~~T~~~~~t~~P~Wne~~~~~v~~--~-~~~l~i~ 431 (772)
+..|.|.|.|++|++|+.+ +..|.+||||++.+ ++ ...+|+++++|.||+|||+|.|.+.. . ...|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 4448999999999999987 66689999999997 32 34799999999999999999999864 2 3479999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||++..+ ++++||++.|+...... ...++|+.|...
T Consensus 88 V~d~d~~~------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 88 VYGHNVKS------SNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred EEeCCCCC------CCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 99999864 89999999877654432 234778887654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-15 Score=138.12 Aligned_cols=118 Identities=30% Similarity=0.385 Sum_probs=99.4
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeeecCCCCCeeccEEEEEeccC-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-----KGTTKHFEKKSNPEWNQCFAFSKDRI- 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~t~nP~Wne~f~f~v~~~- 98 (772)
|++.+++.|+-.. +.|.|+|++|+||+..+..+.+||||++++.+. +.+|+++.++.||.|||+|.|.+...
T Consensus 1 G~i~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPTA--ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CeEEEEEEeeCCC--CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 5677888887544 589999999999999888889999999999752 57999999999999999999998653
Q ss_pred -CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 99 -QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 99 -~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
....|.|+|||.+.. ++++||.+.+++.+ .+ ....+|++|....++
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~-----~~~~~W~~l~~~~~~ 126 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GG-----EELEHWNEMLASPRK 126 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CC-----cHHHHHHHHHhCCCC
Confidence 257899999999987 99999999999998 22 235789999877554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.5e-15 Score=132.74 Aligned_cols=90 Identities=33% Similarity=0.530 Sum_probs=81.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYK--GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~--~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
.|+|+|++|++|++.+..|.+||||+++++++. .+|++++++.||+|||+|.|.+..+....|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 479999999999999988999999999999864 5788889999999999999998766678999999999998 9999
Q ss_pred eEEEEEEccccCC
Q 004127 118 IGRVMFDLNEVPK 130 (772)
Q Consensus 118 lG~~~i~l~~l~~ 130 (772)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=130.18 Aligned_cols=116 Identities=21% Similarity=0.310 Sum_probs=92.8
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
.|.|+|.+|+ |... +..+.+||||+|+++++ ..+|++++++.||.|||.|.|.+. ..+.|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 6889999998 5443 44678999999999887 799999999999999999999975 4678999999999865
Q ss_pred CCCCCcccEEEEEecCccccCc---e--EeeeEeeeecCCCCcccccEEEEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLETDR---V--YTHSYPLLVLHPSGVRKMGEVQLAV 490 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~i~l~~ 490 (772)
++++||++.++|.++..+. . ...|+++........+..|.|.+++
T Consensus 75 ---~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ---ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ---CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 8999999999999986432 1 3458888754421224568888765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-14 Score=128.52 Aligned_cols=112 Identities=28% Similarity=0.469 Sum_probs=88.1
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHG 440 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~ 440 (772)
|+|.|++|+||+.. |.+||||+++++++ .++|+++++ .||.|||+|.|.+.. ....|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 68999999999885 489999999 999999999999986 3457888888876532
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++..+|++.|.. +..+...+.||+|.+... +.+..|+|+++++|
T Consensus 74 -----~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 -----RDIVIGKVALSK--LDLGQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred -----CeeEEEEEEecC--cCCCCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 566677666554 444666799999987643 23457999999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-15 Score=135.94 Aligned_cols=104 Identities=19% Similarity=0.299 Sum_probs=86.7
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~---~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
..+.|.|+|++|+||+.+ +..|.+||||+|.+ ++ ...||++++++.||.|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~v~vi~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 13 TANRITVNIIKARNLKAM---DINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 347899999999999887 66789999999988 33 24799999999999999999999863 246899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
||++.++ ++++||++.+++.+. +...++|++|...
T Consensus 90 ~d~~~~~------~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 90 MDKDRLS------RNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred EECCCCC------CCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 9999865 889999999999986 4445778877653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=130.00 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=91.1
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-------------CEEEEeecccCCCCCee-cceEEEEeeCCCcEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-------------QKWVRTRTIVDSFGPRW-NEQYTWEVFDPCTVIT 429 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-------------~~~~~T~~~~~t~~P~W-ne~~~~~v~~~~~~l~ 429 (772)
++.|.+++|+||+ . +..|++||||++++. ++.+||+++++++||+| ||.|.|.+. +.+.|.
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 4678999999997 4 667899999999883 23689999999999999 999999985 467899
Q ss_pred EEEEeCCcCCCCCCCCCCcccEEEEEecCccccC---ceEeeeEeeeecCCCCcccccEEEEEE
Q 004127 430 VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD---RVYTHSYPLLVLHPSGVRKMGEVQLAV 490 (772)
Q Consensus 430 i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~i~l~~ 490 (772)
|+|||++..+ +...+++||++.+++.++..+ .....||+|......+ .-.|+|.+.+
T Consensus 77 v~V~D~~~~~---~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKS---RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEecCCCC---CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 9999976421 111379999999999999654 3457789887543222 2358877654
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-15 Score=136.81 Aligned_cols=105 Identities=16% Similarity=0.290 Sum_probs=88.3
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~ 431 (772)
...+.|.|+|++|+||+.+ +..|.+||||+|.+.+ ...||++++++.||+|||+|.|.+..+ ...|.|+
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred CCCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 4458999999999999987 6668899999999843 358999999999999999999998753 4689999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||++..+ ++++||.+.+++.. .+....+||++...
T Consensus 87 V~d~d~~~------~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 87 VWDKDIGK------SNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred EEeCCCCC------CccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 99998754 88999999999986 34445789988653
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=129.33 Aligned_cols=106 Identities=29% Similarity=0.448 Sum_probs=91.0
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEe-c-
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSK-D- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v-~- 96 (772)
+|++.+++.|+-.. +.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||.|||+|.|.. .
T Consensus 1 ~G~~~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~ 78 (123)
T cd04035 1 LGTLEFTLLYDPAN--SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78 (123)
T ss_pred CcEEEEEEEEeCCC--CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCH
Confidence 36788888888654 58999999999999988888999999999842 468999999999999999999963 2
Q ss_pred -cCCCceEEEEEEecCCCCCceeEEEEEEccccCCC
Q 004127 97 -RIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 97 -~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 131 (772)
+.....|.|+|||++..++++||++.++++++..+
T Consensus 79 ~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 79 EDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred HHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 23357899999999877889999999999999865
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=130.98 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=86.5
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC------EEEEeecccCCCCCeecceEEEEeeC---CCcEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITV 430 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i 430 (772)
+..+.|.|.|++|+||+.+ +..|.+||||++.+.+ .+.||++++++.||+|||+|.|.+.. ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3448999999999999987 6678899999998832 24799999999999999999999984 3568999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
.|||++.++ ++++||++.+++..... ...++|+.+..
T Consensus 89 ~V~~~~~~~------~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 89 SVYNKRKMK------RKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred EEEECCCCC------CCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 999999865 89999999999876532 22367887754
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=129.46 Aligned_cols=100 Identities=14% Similarity=0.304 Sum_probs=81.8
Q ss_pred CcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCC-CCeeccEEEEEeccC-C
Q 004127 27 DKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKS-NPEWNQCFAFSKDRI-Q 99 (772)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~-nP~Wne~f~f~v~~~-~ 99 (772)
+-+|+.|. +..+.|.|+|++|+||++.+..+.+||||+|.+-. .++||+++++|. ||+|||+|.|++... .
T Consensus 3 l~~sL~Y~--p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~ 80 (135)
T cd08692 3 LQLGTCFQ--AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH 80 (135)
T ss_pred EEEEeeec--CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh
Confidence 34555554 56679999999999999876567789999998853 378999999995 699999999999542 2
Q ss_pred CceEEEEEEecCCC-CCceeEEEEEEcccc
Q 004127 100 ASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128 (772)
Q Consensus 100 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 128 (772)
.-.|.|+|||.+.. ++++||.+.+.....
T Consensus 81 ~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 81 GIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 35788999999888 999999999998764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=134.46 Aligned_cols=105 Identities=21% Similarity=0.347 Sum_probs=87.7
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
..+.|.|.|++|+||+.+ + .+.+||||+|.+.+ .+.||++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 13 TLNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred CCCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 347899999999999987 5 57799999998832 35799999999999999999999874 246899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
||.+..+ ++++||++.|+......+...++|+.+...
T Consensus 89 ~~~~~~~------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 89 MQSGGVR------KSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred EeCCCCC------CcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 9998754 889999999998776666667888887653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-14 Score=130.42 Aligned_cols=105 Identities=23% Similarity=0.331 Sum_probs=86.3
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~ 431 (772)
+..+.|+|.|++|++|+.+ +..|.+||||+|.+. + ...||++++++.||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 3448999999999999988 667899999999983 2 257999999999999999999998642 3469999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||++..+ ++++||.+.+++... +....+|+++...
T Consensus 88 v~d~~~~~------~~~~IG~~~l~~~~~--~~~~~~w~~~~~~ 123 (134)
T cd08403 88 VVDYDRVG------HNELIGVCRVGPNAD--GQGREHWNEMLAN 123 (134)
T ss_pred EEECCCCC------CCceeEEEEECCCCC--CchHHHHHHHHHC
Confidence 99999865 899999999998743 3444788887653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=127.43 Aligned_cols=111 Identities=32% Similarity=0.497 Sum_probs=86.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccC--CCceEEEEEEecCCC-CCce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRI--QASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|+|++|+||+.. +.+||||+++++++ .++|+++++ .||.|||+|.|.+... ....|.|.+||.+.. ++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999985 479999988 9999999999998653 235788888998766 6677
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEe
Q 004127 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWM 164 (772)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 164 (772)
+|.+.++. +..+ .....||+|.+..+. ... |+|.+.+.|
T Consensus 78 ~g~v~l~~--~~~~-----~~~~~w~~L~~~~~~~~~~-G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSK--LDLG-----QGKDEWFPLTPVDPDSEVQ-GSVRLRARY 117 (117)
T ss_pred EEEEEecC--cCCC-----CcceeEEECccCCCCCCcC-ceEEEEEEC
Confidence 77766554 3332 235789999876543 234 999998864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=128.00 Aligned_cols=93 Identities=20% Similarity=0.299 Sum_probs=77.1
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----eeeeeccccCCCC-CCceeceeEEEeeCCCC-CcEEEEEE
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----QASRTRISPSKTI-NPMWNEDLMFVAAEPFE-EPLILTVE 271 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~-nP~wne~f~f~~~~~~~-~~l~i~V~ 271 (772)
|..+.|+|.|++|+||+..+..+.+||||+|.+-. .+.||+++++ +. ||.|||+|.|.+..... -.+.++||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 45568999999999999886667789999998852 4678998877 74 69999999999975432 36888899
Q ss_pred EccCCCCCceeEEEEEecccc
Q 004127 272 DRVAPNKDEVLGKCLIPLQAV 292 (772)
Q Consensus 272 d~d~~~~d~~iG~~~i~l~~l 292 (772)
|++..+++++||++.++....
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 998888999999999998764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=128.11 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=84.9
Q ss_pred CCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 383 GRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 383 ~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
..|.+||||+|.++++ ..+|++++++.||+|||.|.|.+.++ .+.|.|+|+|++.+ ++++||.+.++|+++
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-------~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-------HDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-------CCCeEEEEEecHHHH
Confidence 4688999999999875 57999999999999999999999875 57899999999874 689999999999998
Q ss_pred cc-CceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 461 ET-DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 461 ~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
.. +.....||+|.+ +..|+|++++.|.|
T Consensus 82 ~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 43 444579999964 24599999999976
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=126.69 Aligned_cols=101 Identities=28% Similarity=0.444 Sum_probs=85.9
Q ss_pred CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCC
Q 004127 57 VTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPD 135 (772)
Q Consensus 57 ~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 135 (772)
.+|.+||||+++++++ ..+|++++++.||+|||+|.|.+.+...+.|.|+|||.+..+|++||++.++|.++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~--- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT--- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh---
Confidence 4688999999999985 679999999999999999999998766788999999998878999999999999996542
Q ss_pred CCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 136 SPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 136 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
.....||+|.+.. . |+|.+++.|.+
T Consensus 86 -~~~~~w~~L~~~~----~-G~i~~~~~~~p 110 (111)
T cd04052 86 -SVGQQWFPLSGNG----Q-GRIRISALWKP 110 (111)
T ss_pred -hccceeEECCCCC----C-CEEEEEEEEec
Confidence 2357999998522 2 99999987753
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-14 Score=132.69 Aligned_cols=102 Identities=29% Similarity=0.533 Sum_probs=88.5
Q ss_pred ecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----------------------------eeeeeccccCCCCC
Q 004127 197 LSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----------------------------QASRTRISPSKTIN 247 (772)
Q Consensus 197 ~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----------------------------~~~kT~~~~~~t~n 247 (772)
..+..+.|.|+|++|++|...|..|.+||||++.++. +.++|+++.+ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 3477899999999999999999999999999999863 2368888876 999
Q ss_pred CceeceeEEEeeCCCCCcEEEEEEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004127 248 PMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNL 308 (772)
Q Consensus 248 P~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L 308 (772)
|.|||+|.|.+.....+.|.|+|||++ +++||++.++++++.. .....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-----~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-----CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-----CCCCCeEeC
Confidence 999999999997766778999999986 8899999999999872 236899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-14 Score=127.34 Aligned_cols=116 Identities=27% Similarity=0.439 Sum_probs=97.1
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeeecCCC-CCeeccEEEEEeccCCCceEEEEEEec
Q 004127 40 QYLYVRVVKAKDLPGKD--VTGSCDPYVEVKLG------NYKGTTKHFEKKS-NPEWNQCFAFSKDRIQASVLEVLVKDK 110 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~--~~~~~dpyv~v~~~------~~~~kT~~~~~t~-nP~Wne~f~f~v~~~~~~~L~i~V~d~ 110 (772)
..|+|+|++|+||+..+ ..+.+||||++++. ..+.+|+++.++. ||+|||+|.|.+..+....|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 37999999999999877 57889999999994 3568999987776 999999999998765567899999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-eeeeEEEEEEEe
Q 004127 111 DVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK-VKTGELMLAVWM 164 (772)
Q Consensus 111 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 164 (772)
+..++++||.+.+++.++..+ ..|++|.+..|.. .. |.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~-~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLEL-STLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcc-eeEEEEEEE
Confidence 877899999999999999533 3689998877653 34 899888764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=134.60 Aligned_cols=103 Identities=23% Similarity=0.356 Sum_probs=88.7
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-----EEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~ 433 (772)
.+.|.|.|++|+||+.. +..+.+||||++.+.+. .++|+++.++.||.|||+|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 37899999999999987 56688999999998542 47999999999999999999998764 578999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|.+..+ ++++||.+.+++++ .+...++|++|...
T Consensus 90 d~~~~~------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDSVG------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCCCC------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998754 88999999999999 55566899998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-15 Score=151.61 Aligned_cols=103 Identities=25% Similarity=0.435 Sum_probs=90.0
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~ 435 (772)
..|.|.|.+|+||.+| |.+|.|||||++++- ..+.||++++.++||+|||+|+|.+.. ....|.|+||||
T Consensus 180 ~~l~v~i~ea~NLiPM---DpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ceEEEEehhhcccccc---CCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 4799999999999999 788999999999992 345899999999999999999999874 467899999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|..+ ++|++|.....+++|... +...||.|.+.
T Consensus 257 DrTs------RNDFMGslSFgisEl~K~-p~~GWyKlLsq 289 (683)
T KOG0696|consen 257 DRTS------RNDFMGSLSFGISELQKA-PVDGWYKLLSQ 289 (683)
T ss_pred cccc------cccccceecccHHHHhhc-chhhHHHHhhh
Confidence 9976 999999999999999653 45788888654
|
|
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=130.87 Aligned_cols=103 Identities=23% Similarity=0.390 Sum_probs=90.2
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEEC----CeeeeeccccCCCCCCceeceeEEEeeCC---------------CCC
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILG----NQASRTRISPSKTINPMWNEDLMFVAAEP---------------FEE 264 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~----~~~~kT~~~~~~t~nP~wne~f~f~~~~~---------------~~~ 264 (772)
|+|.|++|++|+.. ..+.+||||+++++ ++.++|+++.+ +.||.|||.|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57899999999988 77899999999998 67899999987 99999999999998765 356
Q ss_pred cEEEEEEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCc
Q 004127 265 PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHV 312 (772)
Q Consensus 265 ~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 312 (772)
.|.|+|||++..+++++||++.+++.++.. ......||+|....
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~----~~~~~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ----AGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccC----CCcccceEecCCcC
Confidence 899999999988899999999999999863 23478999999863
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-15 Score=151.91 Aligned_cols=104 Identities=33% Similarity=0.513 Sum_probs=93.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-CCCceEEEEEEecCCC
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-IQASVLEVLVKDKDVV 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~~L~i~V~d~~~~ 113 (772)
..|.|+|.+|+||.++|.+|.+||||++++-. .+++|++++.++||+|||+|.|.+.. .....|.|+|||.|+.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 48999999999999999999999999999964 46899999999999999999999843 2467899999999998
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+++|+|+.++.+++|.... ...||.|....
T Consensus 260 sRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 9999999999999998763 67899998765
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-15 Score=147.62 Aligned_cols=228 Identities=21% Similarity=0.284 Sum_probs=173.5
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEe--c
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSK--D 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v--~ 96 (772)
.|..+|...|+-+.+ .+..+|..|++|++++.++.-|||++..+.. .+.+|++..++.||.|+|+..... .
T Consensus 79 lg~~~~~~~y~~~~~--~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~ 156 (362)
T KOG1013|consen 79 LGALEFELLYDSESR--MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITD 156 (362)
T ss_pred ccchhhhhhhhhhhh--hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccccc
Confidence 455677777877666 8899999999999999999999999999985 467899999999999999866653 2
Q ss_pred -cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC------CCceeeeEEEEEEEeeecC
Q 004127 97 -RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK------GDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 97 -~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~------~~~~~~G~l~l~~~~~~~~ 168 (772)
+.....+++.|.|.+.+ .++++|+..+++..+...+. .....|+.-.-+. ..+.+ |+|.+++.+..
T Consensus 157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~r-g~i~isl~~~s-- 230 (362)
T KOG1013|consen 157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEER-GAILISLAYSS-- 230 (362)
T ss_pred chhhhhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhc-cceeeeeccCc--
Confidence 22346788899998888 88999999999988875532 1222333322221 11223 77777764422
Q ss_pred CCcCCCcCCCCCccCCCCCccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----eeeeeccccC
Q 004127 169 DEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----QASRTRISPS 243 (772)
Q Consensus 169 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~ 243 (772)
....+.|++++|.+|..+|.++.+||||..++.. .+.+|.+.++
T Consensus 231 -------------------------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~ 279 (362)
T KOG1013|consen 231 -------------------------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK 279 (362)
T ss_pred -------------------------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc
Confidence 2235799999999999999999999999999863 3567888876
Q ss_pred CCCCCceeceeEEEeeCC--CCCcEEEEEEEccCCCCCceeEEEEEeccc
Q 004127 244 KTINPMWNEDLMFVAAEP--FEEPLILTVEDRVAPNKDEVLGKCLIPLQA 291 (772)
Q Consensus 244 ~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~ 291 (772)
+.||.|++.|.|.+... ....+.|.|||++.....+++|-+...+..
T Consensus 280 -t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 280 -TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred -cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 99999999999988533 355789999999887788899987665443
|
|
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=125.50 Aligned_cols=116 Identities=24% Similarity=0.361 Sum_probs=95.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC-C----
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV-V---- 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~-~---- 113 (772)
..|.|.|++|++|++++ +|||.+.+++++ .||+++.++.||.|+|.|.|..... ...|.|.||+.+. .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 37999999999999865 799999999976 6999999999999999999986543 4679999986543 2
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc--------eeeeEEEEEEEeee
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK--------VKTGELMLAVWMGT 166 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~ 166 (772)
++.+||.+.|++.++..+ .....||+|.+..+.. ...+.|++++.|..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~-----~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSR-----QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCC-----CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 579999999999999855 3478999999876542 12278888887754
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-14 Score=127.25 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=83.3
Q ss_pred EEEEecCCCCCccCCCCCCcCcEEEEEECCE-------EEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCc--
Q 004127 368 GVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGH-- 437 (772)
Q Consensus 368 ~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~-- 437 (772)
..++|++|+.. +..|.+||||+|.+.+. .+||++++++.||+|||.|.|.+.. ..+.|.|+|||++.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 34789999987 66789999999999553 3899999999999999999998653 56789999999996
Q ss_pred --CCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 438 --IHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 438 --~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
.+ ++++||++.++++++..+.....+++|..
T Consensus 82 ~~~~------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 44 89999999999999987766678888843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=124.43 Aligned_cols=97 Identities=24% Similarity=0.394 Sum_probs=81.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeCC----CcEEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFDP----CTVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~~----~~~l~i~v~ 433 (772)
+.|.|+|++|++|+.. +..+.+||||++.+. ....||++++++.||.|||.|.|..... ...|.|+||
T Consensus 15 ~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 15 SALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 7899999999999987 556889999999872 2368999999999999999999974432 468999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHS 469 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~ 469 (772)
|++.+ ++++||.+.++++++..++....+
T Consensus 92 d~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 92 DEDRF-------GNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EcCCc-------CCeeEEEEEEEcccCCCCcceEee
Confidence 99864 678999999999999887644333
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-14 Score=174.69 Aligned_cols=118 Identities=22% Similarity=0.442 Sum_probs=102.0
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCC--cEEEEEEEeCC
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPC--TVITVGVFDNG 436 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~--~~l~i~v~D~~ 436 (772)
.-.|.|.|+|++|+||. +..|++||||++.+|++ +.||++++++.||+|||.|+|.+.+|. +.|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 44699999999999997 33578999999999965 789999999999999999999999865 78999999999
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccE---EEEEEEEe
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGE---VQLAVRFT 493 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~f~ 493 (772)
.+ +++.||++.|++.++..++.+..||+|... | +|.|+ |+++++++
T Consensus 2052 ~f-------~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TF-------GKSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred cc-------CCCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 87 345999999999999999999999999852 2 34577 88887764
|
|
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-14 Score=126.62 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=80.9
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEECCee--eeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCce
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA--SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEV 281 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~ 281 (772)
|+|.|++|++|+..+..+.+||||++.++++. .+|+++++ +.||.|||.|.|.+..+..+.|.|+|||++..++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 78999999999999988999999999999865 57777876 9999999999999877777889999999999989999
Q ss_pred eEEEEEeccccc
Q 004127 282 LGKCLIPLQAVQ 293 (772)
Q Consensus 282 iG~~~i~l~~l~ 293 (772)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=118.63 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=66.7
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIH 439 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~ 439 (772)
|.|.|++|+||+ +.+||||++.+++ ..+||+++++|+||+|||+|.|++. ....|.+.|||++.-.
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccc
Confidence 578999999995 3599999998853 3589999999999999999999986 4779999999984100
Q ss_pred -CCCCCCCCcccEEEEEecC
Q 004127 440 -GQGGGGKDSRIGKVRIRLS 458 (772)
Q Consensus 440 -~~~~~~~~~~lG~~~i~l~ 458 (772)
..+..++|+.+|++.+.|.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccccCcccEEEEEEEEEC
Confidence 0001238999988777664
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=124.17 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=83.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC----C-
Q 004127 46 VVKAKDLPGKDVTGSCDPYVEVKLGNY-------KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV----V- 113 (772)
Q Consensus 46 v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~----~- 113 (772)
.++|++|+..+..|.+||||++++.+. ..+|++++++.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 588999999998899999999999875 3899999999999999999998654446789999999996 6
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
++++||++.+++.++.... ....|++|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~~-----~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSP-----GQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCC-----CcEEEEEccC
Confidence 9999999999999998653 2457888843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=122.75 Aligned_cols=117 Identities=20% Similarity=0.347 Sum_probs=93.3
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE------CCEEEEeecccCCC-CCeecceEEEEeeCCC-cEEEEEEEeC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY------GQKWVRTRTIVDSF-GPRWNEQYTWEVFDPC-TVITVGVFDN 435 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~------~~~~~~T~~~~~t~-~P~Wne~~~~~v~~~~-~~l~i~v~D~ 435 (772)
.|+|+|++|+||+.++. +..+.+||||++++ +...+||+++.++. ||.|||+|.|.+..+. ..|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999998731 14678999999999 34568999988776 9999999999998754 5799999998
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+.. ++++||.+.++++++..+ ..|++|...... ....|.|.+.+++
T Consensus 82 ~~~-------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PLELSTLFVHIDI 127 (128)
T ss_pred CCC-------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CCcceeEEEEEEE
Confidence 863 789999999999999766 367888765322 1234788887765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=152.29 Aligned_cols=124 Identities=23% Similarity=0.396 Sum_probs=103.6
Q ss_pred eEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eeee
Q 004127 40 QYLYVRVVKAKDLPGKDV------------------------------------------TGSCDPYVEVKLGNY-KGTT 76 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~------------------------------------------~~~~dpyv~v~~~~~-~~kT 76 (772)
|.|.|+|.+|++|+.+|. .+++||||+|.++++ +.||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 588999999999985221 247899999999886 5699
Q ss_pred eeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcee-e
Q 004127 77 KHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVK-T 155 (772)
Q Consensus 77 ~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-~ 155 (772)
++++++.||+|||+|.|.+.++ ...|.|+|||.+.+++++||++.|+|.++..+. ....|++|.+..++... .
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge-----~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE-----RISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC-----ceEEEEEccccCCCCCCCC
Confidence 9999999999999999999885 468999999999998899999999999998763 25799999988765321 1
Q ss_pred eEEEEEEEeeecCC
Q 004127 156 GELMLAVWMGTQAD 169 (772)
Q Consensus 156 G~l~l~~~~~~~~d 169 (772)
|+|.+++.|.+-..
T Consensus 168 ~kl~v~lqf~pv~~ 181 (868)
T PLN03008 168 TAIFIDMKFTPFDQ 181 (868)
T ss_pred cEEEEEEEEEEccc
Confidence 79999999987543
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=118.66 Aligned_cols=78 Identities=24% Similarity=0.444 Sum_probs=67.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEec------
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDK------ 110 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~------ 110 (772)
|.|+|.+|+||+ +.+||||++.+.+ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999996 4689999999864 35899999999999999999999974 67999999998
Q ss_pred -CCC-CCceeEEEEEEcc
Q 004127 111 -DVV-LDDLIGRVMFDLN 126 (772)
Q Consensus 111 -~~~-~d~~lG~~~i~l~ 126 (772)
+.. +|+++|.+.+.|.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 344 8999988888775
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-13 Score=142.76 Aligned_cols=179 Identities=25% Similarity=0.378 Sum_probs=125.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHH---HhhcccccccChhhHHHHHHHHHHHHHccchh---HHHHHHHHHHHHhhcc
Q 004127 559 HMWSMRRSKANFFRIMGVLSSLISVG---KWFDQICNWKNPLTTILIHILFIILVLYPELI---LPTVFLYLFLIGIWNF 632 (772)
Q Consensus 559 ~~~s~~~l~~n~~rl~~~~~~~~~~~---~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~---~p~~~l~~~~~~~~~~ 632 (772)
+.+|+..+.+|+.||.+.++.++.++ +.+.++++|++|..|..++++|+++|++|.+. +|++++ ++++++..|
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~y 79 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSY 79 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45789999999999999999999999 99999999999999999999999999998873 444443 344455555
Q ss_pred ccCCCCCCCCCccCCccccCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----ccccC
Q 004127 633 RWRPRHPPHMDTRLSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQS----LISWR 708 (772)
Q Consensus 633 ~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~n----l~~w~ 708 (772)
..+++.+.. .... ...+.+.+.+..|+-.+. -++.+ ..++.+||.|+.+.+.++.+.. .++|+
T Consensus 80 l~~~p~~~~--~~~~-----~~~~~~~~~~~~ptl~~~--s~e~~----~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 80 LYRHPSPTS--SLPK-----SYEDHNPEPSEGPTLDKP--SREIV----MNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred HeecCCCcc--cccc-----cccccCCCcCCCCCcchh--HHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 444422211 0000 000011111111111100 13444 5555699999999999888874 55799
Q ss_pred CchhHHHHHHHHHHHHHHHh----hhhHHHHHHHhhhh-hhcCCccCC
Q 004127 709 DPRATTLFVTFCLIAAIVLY----VTPFQVVALLAGIY-VLRHPRFRH 751 (772)
Q Consensus 709 ~p~~t~~~~~~l~~~~~~~~----~iP~r~i~~~~g~~-~~~~P~~r~ 751 (772)
++..|..++.+|+++.+.++ +||+|++++++|.. .+.||..++
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 99999998888877777554 58999999999944 788998874
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=167.35 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=101.0
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCC-CceEEEEEEecCCC
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQ-ASVLEVLVKDKDVV 113 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~-~~~L~i~V~d~~~~ 113 (772)
..-.|.|.|+|++|+||. +..|++||||++++|++ +.||++++++.||+|||.|.|.+.++. .+.|.|+|||+|.+
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 345789999999999998 33689999999999975 889999999999999999999998764 46799999999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeE---EEEEEEee
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGE---LMLAVWMG 165 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~---l~l~~~~~ 165 (772)
+++.+|.++|++.++..++. ...||+|.++..+. |. |.+.+.|.
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~~~~k~---G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGT-----YSGEYSLNPESNKD---GSSRTLEIEFQWS 2100 (2102)
T ss_pred CCCCCceEEEEHHHHhcCce-----eeeeeecCcccccC---CCcceEEEEEEec
Confidence 66699999999999986642 67899999642222 66 88887664
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-13 Score=118.93 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=73.5
Q ss_pred EEEEecCCCCCccCCCCCCcCcEEEEEECCE------EEEeecccCCCCCeecceEEEEeeC-----CCcEEEEEEEeCC
Q 004127 368 GVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK------WVRTRTIVDSFGPRWNEQYTWEVFD-----PCTVITVGVFDNG 436 (772)
Q Consensus 368 ~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~------~~~T~~~~~t~~P~Wne~~~~~v~~-----~~~~l~i~v~D~~ 436 (772)
..++|++|+.+ |..|.+||||++++.+. .+||+++++++||+|| .|.|++.+ +...|.|+|||++
T Consensus 5 ~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 5 LQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 45699999987 66789999999988432 4899999999999999 68877642 2678999999999
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCc
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
..+ +|++||++.+++.++..++
T Consensus 81 ~~~------~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 81 SSG------KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCC------CCcEEEEEEEEHHHHhcCC
Confidence 865 8999999999999998554
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-12 Score=136.90 Aligned_cols=241 Identities=19% Similarity=0.236 Sum_probs=158.2
Q ss_pred eeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccC----CCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004127 234 QASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVA----PNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309 (772)
Q Consensus 234 ~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 309 (772)
+..+|.++.+ .+||.|-+.|...+.....+.++|.++|.+. ....+++|++...++++.... ....-+.++
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~----~~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS----GLTGPLLLK 115 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh----hhhhhhhcc
Confidence 3458889987 9999999999999988888999999999774 356789999999999886421 111112222
Q ss_pred cCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCc
Q 004127 310 KHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDA 389 (772)
Q Consensus 310 ~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dp 389 (772)
.. .....|.|.+.+. +. .....+.+ -.++|.+|... |..+++||
T Consensus 116 ~~--------~~~~~g~iti~ae--e~----------------------~~~~~~~~-~~~~~~~ld~k---d~f~ksd~ 159 (529)
T KOG1327|consen 116 PG--------KNAGSGTITISAE--ED----------------------ESDNDVVQ-FSFRAKNLDPK---DFFSKSDP 159 (529)
T ss_pred cC--------ccCCcccEEEEee--cc----------------------cccCceee-eeeeeeecCcc---cccccCCc
Confidence 11 1122455554442 11 11112333 33568999776 88899999
Q ss_pred EEEEEE--C-CEE---EEeecccCCCCCeecceEEEEee-----CCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecC
Q 004127 390 YCVAKY--G-QKW---VRTRTIVDSFGPRWNEQYTWEVF-----DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLS 458 (772)
Q Consensus 390 yv~v~~--~-~~~---~~T~~~~~t~~P~Wne~~~~~v~-----~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~ 458 (772)
|..+.- + +.+ ++|.+++++++|.|.+ |.++.. ++...+.+++||++.-+ ++++||++..++.
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~------~~~~ig~~~tt~~ 232 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG------KHDLIGKFQTTLS 232 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC------CcCceeEecccHH
Confidence 988844 2 222 7999999999999964 444333 35678999999999854 8899999999999
Q ss_pred ccccCceEeeeEeeeecCCCCc----ccccEEE-------------------EEEEEeecchhHHhhhccCCCCCcc-cc
Q 004127 459 TLETDRVYTHSYPLLVLHPSGV----RKMGEVQ-------------------LAVRFTCSSLINMLHMYSQPLLPKM-HY 514 (772)
Q Consensus 459 ~l~~~~~~~~~~~L~~~~~~g~----~~~G~i~-------------------l~~~f~~~~~~~~~~~~~~p~~p~~-~y 514 (772)
++.... -...+++.+...+.. +..|.+. ..+.|+ .++++.++++.|..|.| ||
T Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~--vgIDfTaSNg~p~~~sSLHy 309 (529)
T KOG1327|consen 233 ELQEPG-SPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFT--VGIDFTASNGDPRNPSSLHY 309 (529)
T ss_pred HhcccC-CcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeE--EEEEEeccCCCCCCCCccee
Confidence 986311 122233333221111 1134432 111111 13445556669999989 99
Q ss_pred CCCCChhHHHH
Q 004127 515 IHPLSVIQLDS 525 (772)
Q Consensus 515 ~~~~~~~~~~~ 525 (772)
++|..+++|++
T Consensus 310 i~p~~~N~Y~~ 320 (529)
T KOG1327|consen 310 IDPHQPNPYEQ 320 (529)
T ss_pred cCCCCCCHHHH
Confidence 99999999986
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=115.47 Aligned_cols=86 Identities=27% Similarity=0.390 Sum_probs=75.0
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeeecCCCCCeeccEEEEEeccCC----CceEEEEEEecCCC-
Q 004127 45 RVVKAKDLPGKDVTGSCDPYVEVKLGNY------KGTTKHFEKKSNPEWNQCFAFSKDRIQ----ASVLEVLVKDKDVV- 113 (772)
Q Consensus 45 ~v~~a~~L~~~~~~~~~dpyv~v~~~~~------~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~~L~i~V~d~~~~- 113 (772)
-.++|++|+..+..+.+||||++++.++ .++|++++++.||+|| .|.|.+.++. ...|.|+|||++..
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 3679999999999999999999998653 5899999999999999 7888764332 57899999999998
Q ss_pred CCceeEEEEEEccccCCC
Q 004127 114 LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~ 131 (772)
+|++||++.+++.++...
T Consensus 84 ~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 84 KHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCcEEEEEEEEHHHHhcC
Confidence 999999999999999844
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=109.04 Aligned_cols=81 Identities=42% Similarity=0.592 Sum_probs=74.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|+|++|+||+..+..+.+||||++.+++ ...+|++++++.||.|+|+|.|.+.....+.|.|+|||.+.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999998 569999999999999999999998666667799999999998 7999
Q ss_pred eEEEE
Q 004127 118 IGRVM 122 (772)
Q Consensus 118 lG~~~ 122 (772)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-13 Score=134.34 Aligned_cols=222 Identities=16% Similarity=0.215 Sum_probs=162.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----eeeeeccccCCCCCCceeceeEEEe--eCCC-CCcEEEEEEE
Q 004127 201 LWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----QASRTRISPSKTINPMWNEDLMFVA--AEPF-EEPLILTVED 272 (772)
Q Consensus 201 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~--~~~~-~~~l~i~V~d 272 (772)
...+..++..|++|.+++.++..|||++..++. .+.+|++..+ ++||.|+|+-.+.. .+.. ...+++.|.|
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeecc
Confidence 345789999999999999999999999999873 3578888876 99999998755433 3222 3468889999
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCc
Q 004127 273 RVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRP 352 (772)
Q Consensus 273 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p 352 (772)
.+.+...+++|+..+.+..+..++ ......|+.-..+.+..+ .......|.+.+++..+
T Consensus 171 n~~~~~~~sqGq~r~~lkKl~p~q--~k~f~~cl~~~lp~~rad-~~~~E~rg~i~isl~~~------------------ 229 (362)
T KOG1013|consen 171 NDKKTHNESQGQSRVSLKKLKPLQ--RKSFNICLEKSLPSERAD-RDEDEERGAILISLAYS------------------ 229 (362)
T ss_pred CcccccccCcccchhhhhccChhh--cchhhhhhhccCCccccc-ccchhhccceeeeeccC------------------
Confidence 999989999999998888876532 233445554333311001 11123456665554321
Q ss_pred cccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC---C
Q 004127 353 TAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD---P 424 (772)
Q Consensus 353 ~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~---~ 424 (772)
.....+.|.+++|..|..+ |.+|-+||||..++.. .+.||.+.++|++|.||+.|.|.+.. .
T Consensus 230 -------s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa 299 (362)
T KOG1013|consen 230 -------STTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLA 299 (362)
T ss_pred -------cCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchh
Confidence 1224677899999999998 6779999999998843 23799999999999999999998874 2
Q ss_pred CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 425 CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 425 ~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
...+.|.|+|++.- ...+++|-+...+...
T Consensus 300 ~~kv~lsvgd~~~G------~s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 300 YKKVALSVGDYDIG------KSNDSIGGSMLGGYRR 329 (362)
T ss_pred cceEEEeecccCCC------cCccCCCccccccccc
Confidence 56799999998862 2778888877665543
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-12 Score=139.37 Aligned_cols=121 Identities=30% Similarity=0.558 Sum_probs=106.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC--------
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV-------- 112 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~-------- 112 (772)
.+.++|+.|++|.++|..|++||||.+.++..+.||+++...+||+|||.|.|...+ .++.+++.|||.|.
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999987 47899999999875
Q ss_pred -C---CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-eeeeEEEEEEEeeecCCC
Q 004127 113 -V---LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK-VKTGELMLAVWMGTQADE 170 (772)
Q Consensus 113 -~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~~~~d~ 170 (772)
+ .|+|+|+..|.+..|..+ .+.||+|+....+. +. |-|++.+++...+++
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavs-gairlhisveikgee 429 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVS-GAIRLHISVEIKGEE 429 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhcc-ceEEEEEEEEEcCcc
Confidence 1 799999999999988543 67899999876554 45 999999988765543
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-12 Score=138.77 Aligned_cols=124 Identities=28% Similarity=0.437 Sum_probs=103.3
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
..+.++|++|+||.+. |..|++||||.+.+|..+.||+++-..+||+|||.|.|++.+..+.|.+.|||+|.--...
T Consensus 295 akitltvlcaqgl~ak---dktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAK---DKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeeEEeeeecccceec---ccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 6889999999999987 7789999999999999999999999999999999999999999999999999988521000
Q ss_pred -----CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 443 -----GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 443 -----~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
.+++|+|||+..|.+..+... +..||.|.....+.. -+|.|++.|.+
T Consensus 372 lrqkl~resddflgqtvievrtlsge--mdvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchhh-ccceEEEEEEE
Confidence 167899999999999988654 488999976543333 35777766654
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=136.94 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=108.5
Q ss_pred cEEEEEEEEecCCCCCcc---------------CCCCCCcCcEEEEEECCEE-EEeecccCC-CCCeecceEEEEeeCCC
Q 004127 363 GILELGVLSAHGLTPMKT---------------KDGRGTTDAYCVAKYGQKW-VRTRTIVDS-FGPRWNEQYTWEVFDPC 425 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~---------------~~~~g~~dpyv~v~~~~~~-~~T~~~~~t-~~P~Wne~~~~~v~~~~ 425 (772)
|.|.++|++|++|++++- ....+.+||||.|.+++.+ .||+++.+. .||+|||.|.+++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 889999999999986310 0224678999999998876 699999884 69999999999999999
Q ss_pred cEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEeecch
Q 004127 426 TVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSL 497 (772)
Q Consensus 426 ~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 497 (772)
..+.|.|.|.|.+ +..+||.+.||+.++..|..+++|+++.+...+..+...+|+++++|.+...
T Consensus 88 ~~v~f~vkd~~~~-------g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 88 SNIIFTVKDDNPI-------GATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ceEEEEEecCCcc-------CceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 9999999999988 5679999999999999999999999998875444444458999999998654
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=103.11 Aligned_cols=82 Identities=28% Similarity=0.496 Sum_probs=74.7
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEECC---eeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCc
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGN---QASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDE 280 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~ 280 (772)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.+ +.+|.|+|.|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999987 899999999999987777777999999999988899
Q ss_pred eeEEEE
Q 004127 281 VLGKCL 286 (772)
Q Consensus 281 ~iG~~~ 286 (772)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=99.05 Aligned_cols=99 Identities=39% Similarity=0.613 Sum_probs=85.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
|.|+|++|++|......+.++|||.+.+.+ ...+|+++.++.||.|||.|.|.+.......|.|+|||.+.. ++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998866677899999999998 889999999999999999999999875578899999999987 689999
Q ss_pred EEEEEccccC-CCCCCCCCCCCeEEEe
Q 004127 120 RVMFDLNEVP-KRIPPDSPLAPQWYRL 145 (772)
Q Consensus 120 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 145 (772)
.+.+++.++. .. .....|++|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSG-----KEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcC-----CcCcceecC
Confidence 9999999997 22 224567764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=99.52 Aligned_cols=99 Identities=30% Similarity=0.535 Sum_probs=84.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~~~~ 442 (772)
+.|.|++|++|... ...+..+|||++.+.+ ..++|+++.++.||.||+.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46889999999875 3456799999999987 88999999999999999999999998 6788999999998753
Q ss_pred CCCCCcccEEEEEecCccc-cCceEeeeEee
Q 004127 443 GGGKDSRIGKVRIRLSTLE-TDRVYTHSYPL 472 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~-~~~~~~~~~~L 472 (772)
.+.+||.+.+++.++. .......|++|
T Consensus 75 ---~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ---KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ---CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999987 55555666654
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=98.19 Aligned_cols=90 Identities=39% Similarity=0.616 Sum_probs=81.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY---KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999998776578999999999975 79999999999999999999999876578999999999877 7999
Q ss_pred eEEEEEEccccCCC
Q 004127 118 IGRVMFDLNEVPKR 131 (772)
Q Consensus 118 lG~~~i~l~~l~~~ 131 (772)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999998765
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-10 Score=98.07 Aligned_cols=91 Identities=29% Similarity=0.530 Sum_probs=79.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE---EEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK---WVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHG 440 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~---~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~ 440 (772)
+.|.|++|++|... ...+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 67899999999875 33357999999999765 79999999999999999999999987 889999999988643
Q ss_pred CCCCCCCcccEEEEEecCccccCc
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
.+.++|.+.+++.++..+.
T Consensus 78 -----~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -----RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -----CCceeEEEEEEHHHcccCc
Confidence 6899999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-10 Score=121.18 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEe
Q 004127 40 QYLYVRVVKAKDLPGK-----DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKD 109 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~-----~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d 109 (772)
..|.|+|+.|++++.. +....+||||+|.+.| .+.+|++..++.||+|||+|.|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999987521 2234689999999987 25678777888999999999999988777889999999
Q ss_pred cCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 110 KDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 110 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
+|.. +|+++|+..+++..|..+ -++++|.+..|.......|.+++.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 899999999999999766 3677999888876443667666644
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-10 Score=100.94 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=76.8
Q ss_pred EEEEEEEecCCCCCccCCCCC--CcCcEEEEEECC---EEEEeecccCCCC--CeecceEEEEeeCC-------------
Q 004127 365 LELGVLSAHGLTPMKTKDGRG--TTDAYCVAKYGQ---KWVRTRTIVDSFG--PRWNEQYTWEVFDP------------- 424 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g--~~dpyv~v~~~~---~~~~T~~~~~t~~--P~Wne~~~~~v~~~------------- 424 (772)
|+|.|.+|+|++..+. +..| .+||||++.+.+ .+.+|.+..+++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 7899999999775432 2245 499999999854 5689999999999 99999999987641
Q ss_pred -----------CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCc
Q 004127 425 -----------CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 425 -----------~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
...|.++|||.|.++ +|++||.+.++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC------CCCcceEEEEEhhhccccc
Confidence 356999999999976 8999999999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.4e-10 Score=99.44 Aligned_cols=90 Identities=30% Similarity=0.384 Sum_probs=77.0
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeeeeeecCCCC--CeeccEEEEEecc---------------
Q 004127 42 LYVRVVKAKDLPGKD--VTG--SCDPYVEVKLGN---YKGTTKHFEKKSN--PEWNQCFAFSKDR--------------- 97 (772)
Q Consensus 42 L~V~v~~a~~L~~~~--~~~--~~dpyv~v~~~~---~~~kT~~~~~t~n--P~Wne~f~f~v~~--------------- 97 (772)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+++|.+.+++.| |+||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999976543 355 499999999986 4689999999999 9999999998743
Q ss_pred --------CCCceEEEEEEecCCC-CCceeEEEEEEccccCCC
Q 004127 98 --------IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 98 --------~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 131 (772)
.....|.++|||.|.+ +|++||++.++|..+...
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 2246899999999999 999999999999988765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=122.29 Aligned_cols=123 Identities=20% Similarity=0.334 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-eeeeeeeecCC-CCCeeccEEEEEeccCC
Q 004127 40 QYLYVRVVKAKDLPGKD------------------VTGSCDPYVEVKLGN-YKGTTKHFEKK-SNPEWNQCFAFSKDRIQ 99 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~------------------~~~~~dpyv~v~~~~-~~~kT~~~~~t-~nP~Wne~f~f~v~~~~ 99 (772)
|.|.|+|.+|++|++.+ ..+++||||.|.+++ ...||+++.+. .||.|+|.|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 68999999999998631 135789999999998 56899999875 5999999999999875
Q ss_pred CceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceee-eEEEEEEEeeecC
Q 004127 100 ASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKT-GELMLAVWMGTQA 168 (772)
Q Consensus 100 ~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~-G~l~l~~~~~~~~ 168 (772)
...+.|.|+|.+.+...+||.+.+++.++..+. ....||++.+..|+.... ..|.+++.|.+..
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~-----~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGE-----EVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCC-----ccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 478999999999998889999999999998774 378999999887765431 4788888887643
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=118.42 Aligned_cols=117 Identities=25% Similarity=0.348 Sum_probs=93.6
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEE
Q 004127 40 QYLYVRVVKAKDLPGK------DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVK 108 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~------~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~ 108 (772)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..+.-..|+|+|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999987532 1123459999999976 4679999999999999999999988766678999999
Q ss_pred ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 109 DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 109 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|+|.. +++++|++.+++..|..+ .+|++|.+..|.......|.+++.+
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99987 899999999999999866 3689999888766432455555543
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=90.85 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=73.3
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCce
Q 004127 42 LYVRVVKAKDLPGKD---VTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~---~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~ 117 (772)
|.|+|..|+|+.-.+ ..+.+||||.+++++. +.||++ +.||.|||+|.|.+.. ...+.+.|||......-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 679999999998776 5788999999999995 889987 5899999999999953 788999999997667778
Q ss_pred eEEEEEEccccCC
Q 004127 118 IGRVMFDLNEVPK 130 (772)
Q Consensus 118 lG~~~i~l~~l~~ 130 (772)
+|..-+.+.++..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 9999999998864
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-09 Score=112.79 Aligned_cols=104 Identities=21% Similarity=0.315 Sum_probs=83.6
Q ss_pred cEEEEEEEEecCCCCC--ccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC-cEEEEEEEe
Q 004127 363 GILELGVLSAHGLTPM--KTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVFD 434 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~--~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~D 434 (772)
..|.|+|+.|++++.. +..+.....||||+|.+.| ...+|.+..++.||+|||+|.|.+..|. ..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999998521 1112235689999998844 3468877778999999999999998875 579999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+|..+ +++++|+..+|++.|..|- +..+|.+.
T Consensus 489 ~D~~~------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~ 520 (537)
T PLN02223 489 YEVST------ADAFCGQTCLPVSELIEGI---RAVPLYDE 520 (537)
T ss_pred cCCCC------CCcEEEEEecchHHhcCCc---eeEeccCC
Confidence 99754 8999999999999999884 67788764
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=114.18 Aligned_cols=120 Identities=24% Similarity=0.310 Sum_probs=92.8
Q ss_pred ccEEEEEEEEecCCCCCc---cCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC-cEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMK---TKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~---~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v 432 (772)
...|.|+|+.|++++... ..+.....||||+|.+-| ...||+++.++.||+|||+|.|.+..|. ..+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 357999999999985321 112234469999998833 4579999999999999999999998764 6799999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+|+|..+ .++++|+..+|++.|..|- +|.+|.+.. |. ..+..+|-++|.
T Consensus 549 ~D~D~~~------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CC-CCCCEEEEEEEE
Confidence 9998854 8999999999999999985 588997543 32 335567667664
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-09 Score=115.67 Aligned_cols=117 Identities=24% Similarity=0.282 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEE
Q 004127 40 QYLYVRVVKAKDLPGK------DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVK 108 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~------~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~ 108 (772)
..|.|+|+.+.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+..+.-..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 4799999999987521 2233579999999976 3578998889999999999999998776789999999
Q ss_pred ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 109 DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 109 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|++.. +|+|+|+..+++..|..+ -+.++|.+..|.......|.+++.+
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~G--------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQG--------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCc--------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 99987 999999999999999765 2466998888876443667776654
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-09 Score=87.93 Aligned_cols=86 Identities=24% Similarity=0.378 Sum_probs=72.1
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
|.|.|..|+|+....+....+.+||||.|++++. ++||++ +.||.|||.|.|+| +....+.+.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5688999999987643225678999999999887 789998 48999999999999 668899999999753
Q ss_pred CCCCcccEEEEEecCccc
Q 004127 444 GGKDSRIGKVRIRLSTLE 461 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~ 461 (772)
+..-.||-.-+.+++|.
T Consensus 71 -~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred -CeecceeeehhhHHHHH
Confidence 36678999999999984
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=112.71 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=93.6
Q ss_pred eEEEEEEEEeecCC--CC----CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEE
Q 004127 40 QYLYVRVVKAKDLP--GK----DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVK 108 (772)
Q Consensus 40 ~~L~V~v~~a~~L~--~~----~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~ 108 (772)
..|.|+|+.|.+++ .. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998753 11 2234579999999975 4679999999899999999999987766689999999
Q ss_pred ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 109 DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 109 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|+|.. +|+++|+..+++..|..+ -+.++|.+..|.......|.+.+.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEEe
Confidence 99887 899999999999999766 2466998888776443566666643
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=111.42 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=96.3
Q ss_pred eEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCee-ccEEEEEeccCCCceEEEEE
Q 004127 40 QYLYVRVVKAKDLPG---K---DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEW-NQCFAFSKDRIQASVLEVLV 107 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~---~---~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~W-ne~f~f~v~~~~~~~L~i~V 107 (772)
..|.|+|+.|++|+. . +.....||||+|.+-+ .+.+|+++.++.||+| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 379999999998732 1 1223479999999975 3579999988899999 99999999776668999999
Q ss_pred EecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 108 KDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 108 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
+|++.. .|+++|+..+++..|..+ -+.++|.+..|+....++|.+++.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEc
Confidence 999877 899999999999999765 35679999888875447788888764
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=108.27 Aligned_cols=120 Identities=25% Similarity=0.444 Sum_probs=100.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecc-eEEEEeeCC---CcEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNE-QYTWEVFDP---CTVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne-~~~~~v~~~---~~~l~i~v~D~~~~ 438 (772)
|.+-|+|..|++||.||.. ....|.||.|++++..+||.+-.+++||.||. -|.|+|.|. ...|.|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7788999999999999543 45689999999999999999999999999995 599999873 56899999999998
Q ss_pred CCCCCCCCCcccEEEEEecCccc----------cCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLE----------TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+ .++.||++.|++..|. .|..+..|+|+.+.- .| ..|+|.+-+++.
T Consensus 81 s------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hg--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HG--IRGEINVIVKVD 136 (1169)
T ss_pred c------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cc--ccceeEEEEEEe
Confidence 7 8999999999999872 356789999997631 12 358888777764
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-08 Score=110.78 Aligned_cols=121 Identities=20% Similarity=0.348 Sum_probs=96.6
Q ss_pred CceeEEEEEEEEeecCCCC-C---CCCCCCcEEEEEECC-----eeeeeeee-cCCCCCeeccEEEEEeccCCCceEEEE
Q 004127 37 EQMQYLYVRVVKAKDLPGK-D---VTGSCDPYVEVKLGN-----YKGTTKHF-EKKSNPEWNQCFAFSKDRIQASVLEVL 106 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~-~---~~~~~dpyv~v~~~~-----~~~kT~~~-~~t~nP~Wne~f~f~v~~~~~~~L~i~ 106 (772)
+..-.|.|.|+.+.+.+.. + .+..+||||.|.+-| ...+|+++ .++-||.|+|+|.|.+..+.-..|+|.
T Consensus 613 ~~~~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~ 692 (746)
T KOG0169|consen 613 PVKKTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFE 692 (746)
T ss_pred CCCceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEE
Confidence 3334899999999976543 2 235689999999987 35789955 667799999999999988777899999
Q ss_pred EEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 107 VKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 107 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
|+|++.. +|+|+|+.++++..|..+- +-++|.+..|+.....+|.+.+.+.
T Consensus 693 V~d~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 693 VHDYDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred EEecCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 9999999 8999999999999998662 3458988888764447777777653
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-09 Score=117.55 Aligned_cols=128 Identities=30% Similarity=0.530 Sum_probs=107.4
Q ss_pred CcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeeeecCCC
Q 004127 35 LVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------------Y------------------KGTTKHFEKKS 83 (772)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------------~------------------~~kT~~~~~t~ 83 (772)
...+...|.|.+.+|+||.++|.+|-+|||+...+.. + .+-|.++++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 3456677889999999999999999999999887632 0 02478889999
Q ss_pred CCeeccEEEEEeccCCCceEEEEEEecCC------------------------------------C-CCceeEEEEEEcc
Q 004127 84 NPEWNQCFAFSKDRIQASVLEVLVKDKDV------------------------------------V-LDDLIGRVMFDLN 126 (772)
Q Consensus 84 nP~Wne~f~f~v~~~~~~~L~i~V~d~~~------------------------------------~-~d~~lG~~~i~l~ 126 (772)
||.|+|.|.|.+++.+++.+.+.+||+|. . .|||+|++.|+|.
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 99999999999999999999999999974 1 4899999999999
Q ss_pred ccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEeeecCC
Q 004127 127 EVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWMGTQAD 169 (772)
Q Consensus 127 ~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~~~d 169 (772)
++... ..++||.|+..+.. +++ |.+.+.+|+.+..+
T Consensus 269 EiP~~------Gld~WFkLepRS~~S~Vq-G~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 269 EIPPD------GLDQWFKLEPRSDKSKVQ-GQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCcc------hHHHHhccCccccccccc-ceEEEEEEEeeecc
Confidence 99644 36899999998755 466 99999999987544
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.9e-08 Score=104.74 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=128.9
Q ss_pred eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-----LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
..+|.++.+.+||.|.+.|.+.......+.|++.++|.+.. ..+|+|++...+.++....... . +|..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~--~l~~ 114 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----G--PLLL 114 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----h--hhhc
Confidence 45899999999999999998887655679999999998653 7789999999999998653211 1 2222
Q ss_pred CCCCceeeeEEEEEEEeeecCCCcCCCcCCCCCccCCCCCccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEE
Q 004127 148 RKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFV 227 (772)
Q Consensus 148 ~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv 227 (772)
+.+.....|+|.+.+.-.... . ....-..+|++|..+|..+++|||.
T Consensus 115 ~~~~~~~~g~iti~aee~~~~--------------------------------~-~~~~~~~~~~~ld~kd~f~ksd~~l 161 (529)
T KOG1327|consen 115 KPGKNAGSGTITISAEEDESD--------------------------------N-DVVQFSFRAKNLDPKDFFSKSDPYL 161 (529)
T ss_pred ccCccCCcccEEEEeeccccc--------------------------------C-ceeeeeeeeeecCcccccccCCcce
Confidence 211111127776665211000 0 1122234689999999999999999
Q ss_pred EEEEC--C----eeeeeccccCCCCCCceeceeEEEeeC----CCCCcEEEEEEEccCCCCCceeEEEEEecccccc
Q 004127 228 KAILG--N----QASRTRISPSKTINPMWNEDLMFVAAE----PFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQR 294 (772)
Q Consensus 228 ~v~l~--~----~~~kT~~~~~~t~nP~wne~f~f~~~~----~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 294 (772)
.++-. . ..++|+++++ +++|.|... ...... .....+.+.+||++..+++++||.+..++.++..
T Consensus 162 ~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 162 EFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 98643 2 4688999988 999999873 333322 2245789999999999999999999999998863
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.4e-08 Score=107.74 Aligned_cols=104 Identities=19% Similarity=0.280 Sum_probs=83.5
Q ss_pred cEEEEEEEEecCCCCCcc---CCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC-cEEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKT---KDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~---~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~ 433 (772)
..|.|+|+.+++++.... .+.....||||+|.+-| ...||++..++.||+|||+|.|++..|. ..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 579999999998753211 12334579999998832 3479998889999999999999998874 78999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|+|..+ +++++|+..||+..|..|- +..+|.+.
T Consensus 549 d~d~~~------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~ 581 (598)
T PLN02230 549 EHDINE------KDDFGGQTCLPVSEIRQGI---HAVPLFNR 581 (598)
T ss_pred ECCCCC------CCCEEEEEEcchHHhhCcc---ceEeccCC
Confidence 998754 8999999999999999884 56677654
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.2e-08 Score=106.47 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=91.6
Q ss_pred cEEEEEEEEecCCCC---CccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCee-cceEEEEeeCCC-cEEEEEE
Q 004127 363 GILELGVLSAHGLTP---MKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRW-NEQYTWEVFDPC-TVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~---~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~W-ne~~~~~v~~~~-~~l~i~v 432 (772)
..|.|+|+.|++|+. .+..+.....||||+|.+.+ ..+||+++.++.||+| ||.|.|.+..|. ..|.|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 579999999998732 11112234589999998832 3579999999999999 999999998864 7899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcc-cccEEEEEEEEee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR-KMGEVQLAVRFTC 494 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~~ 494 (772)
+|+|..+ .++++|+..|+++.|..|- +..+|.+.. |.. ...++-+.+.+.+
T Consensus 511 ~D~d~~~------~d~figq~~lPv~~Lr~GY---R~VpL~~~~--G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDT------QNDFAGQTCLPLPELKSGV---RAVRLHDRA--GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCC------CCCEEEEEEcchhHhhCCe---eEEEccCCC--CCCCCCeEEEEEEEEcC
Confidence 9998754 8899999999999998873 566886543 332 2355666666644
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-08 Score=106.32 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=83.2
Q ss_pred cEEEEEEEEecCCCC--Cc-cCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC-cEEEEEEE
Q 004127 363 GILELGVLSAHGLTP--MK-TKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~--~~-~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~ 433 (772)
..|.|+|+.+++++. .+ ..+.....||||+|.+.| ...||+++.++.||+|||.|.|.+..|. ..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 579999999998531 11 112344589999998842 4579999999999999999999998774 78999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|+|..+ .+++||+..+|+..|..|- +..+|.+.
T Consensus 532 d~D~~~------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~ 564 (581)
T PLN02222 532 EYDMSE------KDDFGGQTCLPVWELSQGI---RAFPLHSR 564 (581)
T ss_pred ECCCCC------CCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence 998754 8999999999999999883 56677654
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.6e-09 Score=94.60 Aligned_cols=102 Identities=18% Similarity=0.274 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCChhHHHHhhccC----CCcccchh--hhHHHHHHHHHHHHHHHHHHHhhccccccc
Q 004127 521 IQLDSLRHQAMQIVSIRLNRAEPPLRKEVVEYMLDV----DSHMWSMR--RSKANFFRIMGVLSSLISVGKWFDQICNWK 594 (772)
Q Consensus 521 ~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~s~~--~l~~n~~rl~~~~~~~~~~~~~i~~l~~W~ 594 (772)
.+++..|+++..++..+++++|...++|+.||++.. +.+.++++ ++++-..|++.+++.+.+.+++++.+++|+
T Consensus 13 ~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWr 92 (156)
T PF08372_consen 13 LWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWR 92 (156)
T ss_pred HhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 455566677777788899999999999999998763 33445555 899999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHccchhHHHHHHH
Q 004127 595 NPLTTILIHILFIILVLYPELILPTVFLY 623 (772)
Q Consensus 595 ~p~~t~~~~~~~~~~~~~~~l~~p~~~l~ 623 (772)
+|.+|.++.++.++++ ...+++|+=.++
T Consensus 93 dP~aT~lf~~~clv~a-vvly~vP~r~l~ 120 (156)
T PF08372_consen 93 DPRATALFVVFCLVAA-VVLYFVPFRVLV 120 (156)
T ss_pred CccHHHHHHHHHHHHH-HHHHHhhHHHHH
Confidence 9999999855554444 334556665443
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-08 Score=105.35 Aligned_cols=124 Identities=28% Similarity=0.478 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeeecCCCCCeec-cEEEEEec--cCCCceEEEEEEecCCC-C
Q 004127 40 QYLYVRVVKAKDLPGKDV-TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWN-QCFAFSKD--RIQASVLEVLVKDKDVV-L 114 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wn-e~f~f~v~--~~~~~~L~i~V~d~~~~-~ 114 (772)
|.|.|.|..||+|+.+|. +...|.||.+++++..+||.+..+++||.|| +.|.|.+. +++++.|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678999999999999986 3468999999999999999999999999999 56889884 56789999999999998 9
Q ss_pred CceeEEEEEEccccCCCCCC-----CCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 115 DDLIGRVMFDLNEVPKRIPP-----DSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~-----~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
++-||.+.|++..|...... .......|+++.+.- ..++ |+|++-+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgir-geinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGIR-GEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cccc-ceeEEEEEEe
Confidence 99999999999988643211 235677899998753 2244 8888877553
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.4e-09 Score=111.43 Aligned_cols=105 Identities=29% Similarity=0.417 Sum_probs=89.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeecCCCCCeeccEEEEEec
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-------KGTTKHFEKKSNPEWNQCFAFSKD 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~ 96 (772)
+|..-+.+.|+...+ .|.|.|+.|+++.+-|.+|.+||||++.+++. ..+|+++++|+||+|+|+|+|.|.
T Consensus 933 fg~lsvr~~y~~n~q--~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp 1010 (1103)
T KOG1328|consen 933 FGVLSVRAYYNGNAQ--TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVP 1010 (1103)
T ss_pred CCceEEEEEeecccc--chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecC
Confidence 344445566666665 89999999999999999999999999999972 469999999999999999999985
Q ss_pred cC----CCceEEEEEEecCCC-CCceeEEEEEEccccCC
Q 004127 97 RI----QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPK 130 (772)
Q Consensus 97 ~~----~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~ 130 (772)
.. ....|.|+|.|+|.. .+||-|++.+.|+++..
T Consensus 1011 ~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1011 PEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred ccccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 32 246799999999999 99999999999998853
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=104.69 Aligned_cols=118 Identities=22% Similarity=0.363 Sum_probs=89.8
Q ss_pred EEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECC-----EEEEeeccc-CCCCCeecceEEEEeeCCC-cEEEEEEEeC
Q 004127 364 ILELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYGQ-----KWVRTRTIV-DSFGPRWNEQYTWEVFDPC-TVITVGVFDN 435 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~-~t~~P~Wne~~~~~v~~~~-~~l~i~v~D~ 435 (772)
.|.|.|+.+++++...... .+..+||||.|+..| ...+|+++. ++-||.|+|+|+|++..|. .-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999876642222 235589999999854 348999555 6889999999999999875 6799999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcc-cccEEEEEEEE
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR-KMGEVQLAVRF 492 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f 492 (772)
|..+ +|+|+|+..||+..|..|- +-.||.+.. |.. ..-++-+.+.+
T Consensus 697 d~~~------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~--G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG------KDDFIGQTTLPVSELRQGY---RHVPLLSRE--GEALSSASLFVRIAI 743 (746)
T ss_pred CCCC------cccccceeeccHHHhhCce---eeeeecCCC--CccccceeEEEEEEE
Confidence 9865 8999999999999998873 557776642 322 23445555554
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=106.16 Aligned_cols=120 Identities=21% Similarity=0.290 Sum_probs=92.8
Q ss_pred cEEEEEEEEecCCCCCccC-CC-CCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCC-cEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTK-DG-RGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~-~~-~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~D~~~~ 438 (772)
|.|.++|++|+-+...-.. +. ....||||.|.+++.+ .|| .+..||+|||.|.+++..+. ..+.|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 7888999998733211000 00 1123999999998876 599 66679999999999999987 789999999
Q ss_pred CCCCCCCCCcccEEEEEecCccccCce-EeeeEeeeecCCCCcccccEEEEEEEEeecch
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRV-YTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSL 497 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 497 (772)
+..+||.+.|++.+|..|.. ++.|+++.+...+.. +..+|+++++|.+...
T Consensus 83 -------~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 -------KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAEL 134 (758)
T ss_pred -------CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhh
Confidence 35799999999999998865 899999988654433 2258999999998754
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-08 Score=112.45 Aligned_cols=119 Identities=29% Similarity=0.360 Sum_probs=99.3
Q ss_pred CCCccc-CCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEE
Q 004127 20 GAGSIT-GDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAF 93 (772)
Q Consensus 20 ~~~~~~-~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f 93 (772)
++|.+| .++++++|. .|.|.|-|.-|++|+--..+..+||||+.++.. .++||+++.+|.||.|||.+.+
T Consensus 1507 ~p~~iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY 1582 (1639)
T KOG0905|consen 1507 NPGEIGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVY 1582 (1639)
T ss_pred CccccCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheee
Confidence 567766 568888887 579999999999996555567899999999976 3689999999999999999988
Q ss_pred E---eccCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 94 S---KDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 94 ~---v~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
. ...+....|++.||..+.. .+.++|.+.++|.++...++ ...||+|..
T Consensus 1583 ~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1583 DGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGA 1635 (1639)
T ss_pred cCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeeccc
Confidence 7 2444568899999999988 99999999999999977642 358999964
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=103.75 Aligned_cols=100 Identities=19% Similarity=0.321 Sum_probs=82.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEE-EeecccCCCCCeec-ceEEEEeeCCC-cEEEEEEEe
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWV-RTRTIVDSFGPRWN-EQYTWEVFDPC-TVITVGVFD 434 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~-~T~~~~~t~~P~Wn-e~~~~~v~~~~-~~l~i~v~D 434 (772)
-.|.|.|+.|+.|+. .++|...|||.|++- ..++ +|.++.+.+||+|| |.|+|.|.+|. .-|+|.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 578999999999984 566778899999873 2344 45556689999999 99999999984 789999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
.|.++ ...|||++..|+..|..| -+..||++.
T Consensus 1141 eDmfs------~~~FiaqA~yPv~~ik~G---fRsVpLkN~ 1172 (1267)
T KOG1264|consen 1141 EDMFS------DPNFLAQATYPVKAIKSG---FRSVPLKNG 1172 (1267)
T ss_pred ccccC------Ccceeeeeecchhhhhcc---ceeeecccC
Confidence 99987 556999999999999887 356777653
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=103.31 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=93.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----ee-eeeeeecCCCCCeec-cEEEEEeccCCCceEEEEEEecCCC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YK-GTTKHFEKKSNPEWN-QCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~-~kT~~~~~t~nP~Wn-e~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
.|.|.|+.||.|+... .|.+.|||.|.+-| .+ ++|.++.+++||+|| |.|.|.+..+.-..|+|.|||.|.+
T Consensus 1066 ~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred EEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 6889999999999554 45677999999976 23 455666899999999 9999999998889999999999999
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
...|||++++++..+..+- +-.+|.+.-.+...+..|.+.+.+.+
T Consensus 1145 s~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~~ 1190 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMRP 1190 (1267)
T ss_pred CCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEecc
Confidence 5669999999999997652 34477665444444577777776654
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=97.67 Aligned_cols=118 Identities=17% Similarity=0.279 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCC----C-CCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC
Q 004127 40 QYLYVRVVKAKDLPGK----D-VTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~----~-~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
|.|.++|.+|+-+... + .+...+|||.|.+++ ...|| .+..||.|+|.|.+.+....+..+.|.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 6899999999843221 1 112239999999998 46788 556699999999999987655689999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecC
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (772)
+..+||.+.+++.++..+. .....|+++.+..|+......|.+++.|.+..
T Consensus 83 ~~~~ig~~~~p~~~~~~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA----SFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC----cccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 4679999999999998763 22689999999887755413888888887644
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00024 Score=74.63 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=157.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEec-------cCCCceEEEEEEecCCC-
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD-------RIQASVLEVLVKDKDVV- 113 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-------~~~~~~L~i~V~d~~~~- 113 (772)
+.|+|++|+|.+... ...-.+..+++++...|..+..+..|.||..+.|.++ ......|++++|..+..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998763 3467889999999999999999999999999999874 23467899999999843
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC--CCceeeeEEEEEEEeeecCCCcCCCc----CC--CCCccCC
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK--GDKVKTGELMLAVWMGTQADEAFPDA----WH--SDAATVS 184 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~~~~~~~d~~~~~~----~~--~~~~~~~ 184 (772)
+.+.+|.+.++|.........+......||+|..-+ -++.+ -+|.+.+.+.........+. +. +......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~K-PEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~ 157 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHK-PELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHV 157 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCC-ccEEEEEEEeccccccCCccccccccCCCcccCCC
Confidence 889999999999998222222234678999998873 23345 78888888876543211100 00 0000000
Q ss_pred CCC---ccc--cc-----cc----e---eecCceEEEEEEEEEeecCCCCCC----C--CCCccEEEEEECCeeeeeccc
Q 004127 185 GEG---VAN--IR-----SK----V---YLSPKLWYVRVNIIEAQDLLPSDK----S--RFPEVFVKAILGNQASRTRIS 241 (772)
Q Consensus 185 ~~~---~~~--~~-----~~----~---~~~~~~~~L~V~v~~a~~L~~~~~----~--~~~dpyv~v~l~~~~~kT~~~ 241 (772)
... ... .. .. . ........|.|++..|.+|...-. . +....|....+-+....|..-
T Consensus 158 ~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 158 PPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred cccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 000 000 00 00 0 012346689999999999875521 1 224556666666666666655
Q ss_pred cCCCCCCcee--ceeEEEeeCC---------CCCcEEEEEEEccCCCCCceeEEEEEecccccc
Q 004127 242 PSKTINPMWN--EDLMFVAAEP---------FEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQR 294 (772)
Q Consensus 242 ~~~t~nP~wn--e~f~f~~~~~---------~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 294 (772)
.. ..+|.|. +.-.+.+... ....|.|.++.. +..||.+.+++..+..
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLP 295 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccC
Confidence 54 6677553 3332444321 234677777663 6689999999999864
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.4e-07 Score=76.66 Aligned_cols=108 Identities=23% Similarity=0.340 Sum_probs=80.0
Q ss_pred EEEEEEEecCCCCCccC------C----CCCCcCcEEEEEE----CCEEEEeecccCCCCCeecceEEEEee--------
Q 004127 365 LELGVLSAHGLTPMKTK------D----GRGTTDAYCVAKY----GQKWVRTRTIVDSFGPRWNEQYTWEVF-------- 422 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~------~----~~g~~dpyv~v~~----~~~~~~T~~~~~t~~P~Wne~~~~~v~-------- 422 (772)
+.|.|++|.||+.+... + ..-..++||++.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 35788899999764221 1 1223789999985 567799999999999999999999876
Q ss_pred C--------CCcEEEEEEEeCCcCCCCC----CCCCCcccEEEEEecCcccc-CceEeeeEee
Q 004127 423 D--------PCTVITVGVFDNGHIHGQG----GGGKDSRIGKVRIRLSTLET-DRVYTHSYPL 472 (772)
Q Consensus 423 ~--------~~~~l~i~v~D~~~~~~~~----~~~~~~~lG~~~i~l~~l~~-~~~~~~~~~L 472 (772)
+ ....+.++||....-+.++ ...+|-.||.+.||+.+|.. ...++.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1367999999987643221 13467789999999999854 3467889975
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.8e-06 Score=98.99 Aligned_cols=104 Identities=22% Similarity=0.290 Sum_probs=84.6
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEee---CC-CcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVF---DP-CTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~---~~-~~~l~i~v 432 (772)
.|.|.|.|..|+||+-. -.+..+||||+.++-+ .+.||+++++|.||.|||.+.+.-. .. ..+|.+.|
T Consensus 1523 ~~~LtImV~H~K~L~~L---qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALL---QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSV 1599 (1639)
T ss_pred CceEEEEhhhhcccccc---cCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeee
Confidence 38999999999999765 3345699999999933 3489999999999999998776522 22 47899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
|..+.+. .+.++|.+.|+|.++.-.+...+||+|-+
T Consensus 1600 ls~~~~~------en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1600 LSNGGLL------ENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred eccccee------eeeeeeeeecchhhcchhhhhcceeeccc
Confidence 9998765 88999999999999876665579999843
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0052 Score=64.68 Aligned_cols=236 Identities=15% Similarity=0.222 Sum_probs=156.0
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeC-------CCCCcEEEEEEEcc-C
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAE-------PFEEPLILTVEDRV-A 275 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~-------~~~~~l~i~V~d~d-~ 275 (772)
+.|.|++|++.+... ...-.+..++++....|..+.. +..|.||....|.+.. .....|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 578999999998762 3467888999999999999887 9999999999998742 23568999999888 5
Q ss_pred CCCCceeEEEEEecccc---ccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCC---------C
Q 004127 276 PNKDEVLGKCLIPLQAV---QRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDE---------S 343 (772)
Q Consensus 276 ~~~d~~iG~~~i~l~~l---~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~---------~ 343 (772)
.+..+.+|.+.++|... .. .......+||+|.... .+-.+..-++.+.+.+......... .
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~--~~~~~~~~W~~LL~~~-----~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~ 150 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQE--KNQKQKPKWYKLLSSS-----SKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPA 150 (340)
T ss_pred CCcceeccEEEEEccccccccc--cccccCCCeeEccccc-----cccccCCccEEEEEEEeccccccCCccccccccCC
Confidence 66788999999999988 32 2234678999998751 0112234567777777554321000 0
Q ss_pred cccCC-------CCCccc--cc-------cc------cCCccEEEEEEEEecCCCCCccC---CCCCCcCcEEEEEECCE
Q 004127 344 THYSS-------DLRPTA--KQ-------LW------KPSIGILELGVLSAHGLTPMKTK---DGRGTTDAYCVAKYGQK 398 (772)
Q Consensus 344 ~~~~~-------~~~p~~--~~-------~~------~~~~g~l~v~v~~a~~L~~~~~~---~~~g~~dpyv~v~~~~~ 398 (772)
+.... ...+.. .+ +. ....=.|.|++-.|++|..+-.. +..+....|....+-|.
T Consensus 151 p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn 230 (340)
T PF12416_consen 151 PPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN 230 (340)
T ss_pred CcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc
Confidence 11111 001100 00 00 11234678888889998665111 11133566677777666
Q ss_pred EEEeecccCCCCCeec-ceEE-EEeeC----------CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccc
Q 004127 399 WVRTRTIVDSFGPRWN-EQYT-WEVFD----------PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE 461 (772)
Q Consensus 399 ~~~T~~~~~t~~P~Wn-e~~~-~~v~~----------~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~ 461 (772)
...|..-+...+|.+- |... +.+.. ....|.|.++- .+..||.+.|++..+.
T Consensus 231 ~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----------g~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 231 DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----------GNQSLGSTSVPLQPLL 294 (340)
T ss_pred EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----------CCcEEEEEEEEhhhcc
Confidence 7788888888888774 3333 66652 13467777776 4568999999999984
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-05 Score=69.74 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=77.5
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEEC----CeeeeeeeecCCCCCeeccEEEEEec--------
Q 004127 42 LYVRVVKAKDLPGKDV-------------TGSCDPYVEVKLG----NYKGTTKHFEKKSNPEWNQCFAFSKD-------- 96 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~-------------~~~~dpyv~v~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~-------- 96 (772)
|.|.|++|.+|++... .-.-|+||++.+. ++..+|+++.++--|.|+-.++|+..
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4577888888875311 1235899999954 36789999999999999999999863
Q ss_pred c-------CCCceEEEEEEecCCC-----------CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 97 R-------IQASVLEVLVKDKDVV-----------LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 97 ~-------~~~~~L~i~V~d~~~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+ ++...+.++||+...- +|-+||.+.|++.+|... ++....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~----rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK----RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc----ccCccccccC
Confidence 1 2356899999998641 677999999999999876 4567889975
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.9e-05 Score=62.47 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=66.9
Q ss_pred EEEEEEeecCCCC-CCCCCCCcEEEEEE--CC-eeeeeeeecCCCCCeeccEEEEEec--cCCCceEEEEEEecCCCCCc
Q 004127 43 YVRVVKAKDLPGK-DVTGSCDPYVEVKL--GN-YKGTTKHFEKKSNPEWNQCFAFSKD--RIQASVLEVLVKDKDVVLDD 116 (772)
Q Consensus 43 ~V~v~~a~~L~~~-~~~~~~dpyv~v~~--~~-~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~L~i~V~d~~~~~d~ 116 (772)
-|+++.|+||.-. ..+.++.-|++-.+ .. ...||.+..+..||+|+|+|.|.+. .+..-.|.|.|+..-+ +.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 4789999999643 33445556776333 33 5689999999999999999999974 4556788899988222 888
Q ss_pred eeEEEEEEccccCCC
Q 004127 117 LIGRVMFDLNEVPKR 131 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~ 131 (772)
.||.+.+++.++-.+
T Consensus 81 ~iG~~sL~l~s~gee 95 (103)
T cd08684 81 TIGECSLSLRTLSTQ 95 (103)
T ss_pred eeeEEEeecccCCHH
Confidence 999999999988543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.3e-05 Score=85.33 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=72.9
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEE-EEECCEEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCV-AKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHI 438 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~-v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~ 438 (772)
-.|.+.+++++|+ | + ..|||+. +.+|.+.+||.+.++|+||+||+...|.|.. .....+|.|||++.+
T Consensus 52 ~~~~~~~~~~~~~----~---~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 52 FSGIALLTLVGAE----M---K---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred ccCeEEEEeehhh----h---c---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 3488999999887 3 2 2588865 5779999999999999999999999998885 233469999999998
Q ss_pred CCCCCCCCCcccEEEEEecCccccCc
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
+ +++.+|.++++|.++...+
T Consensus 122 s------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 S------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred C------HHHhhhheeecHhhccHHH
Confidence 6 9999999999998886543
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00016 Score=58.36 Aligned_cols=95 Identities=14% Similarity=0.375 Sum_probs=68.1
Q ss_pred EEEEEEeecCCCCCC-CCCCccEEEEEEC--C-eeeeeccccCCCCCCceeceeEEEeeCC--CCCcEEEEEEEccCCCC
Q 004127 205 RVNIIEAQDLLPSDK-SRFPEVFVKAILG--N-QASRTRISPSKTINPMWNEDLMFVAAEP--FEEPLILTVEDRVAPNK 278 (772)
Q Consensus 205 ~V~v~~a~~L~~~~~-~~~~dpyv~v~l~--~-~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d~~~~ 278 (772)
-|+++.|+||.-... ...+.-|++-.+. + -..||++... ..||.|+|+|.|.+... ..-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrg-s~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEG-SNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcC-CCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999864332 3345567765553 2 4567777665 99999999999987543 34478888887 5678
Q ss_pred CceeEEEEEeccccccccCCCCCCceeEE
Q 004127 279 DEVLGKCLIPLQAVQRRLDHKPVNTRWFN 307 (772)
Q Consensus 279 d~~iG~~~i~l~~l~~~~~~~~~~~~w~~ 307 (772)
...||.|.+.+.++..++ ..+|.+
T Consensus 79 Ke~iG~~sL~l~s~geeE-----~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQE-----TDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHHH-----hhhhhc
Confidence 899999999999886432 556654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00017 Score=81.90 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=76.1
Q ss_pred cCcCceeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC
Q 004127 34 DLVEQMQYLYVRVVKAKDLPGKDVTGSCDPY-VEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV 112 (772)
Q Consensus 34 ~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpy-v~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~ 112 (772)
..+.-.|+..+++++|+ ++ -.||| +.+.+|.+.+||.+.++|.||+||+...|.+.........|.|||.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred ecccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 34445689999999997 33 24785 556777799999999999999999999999977666778999999999
Q ss_pred C-CCceeEEEEEEccccCCC
Q 004127 113 V-LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~ 131 (772)
+ +++++|.++++|.++..+
T Consensus 121 ~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCHHHhhhheeecHhhccHH
Confidence 9 999999999999888755
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00067 Score=69.80 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=85.5
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-CCE----EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-GQK----WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDN 435 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-~~~----~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~ 435 (772)
..|.+.|.|++|++|.... ..+..++|||+|++ ++. +.+|+...+|++|.+.+...|.-.-+...|.+.||-.
T Consensus 267 ~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 4589999999999998752 23446999999988 332 3689999999999998888887777788899999853
Q ss_pred -CcCCCCCCCCCCcccEEEEEecCccccCc-eEeeeEeeeec
Q 004127 436 -GHIHGQGGGGKDSRIGKVRIRLSTLETDR-VYTHSYPLLVL 475 (772)
Q Consensus 436 -~~~~~~~~~~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 475 (772)
.. -+.+.|+|.++|-+.+|.-.. ....||+|.+.
T Consensus 345 ygR------md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGR------MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccc------cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 22 237889999999999997554 77899999765
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00023 Score=73.11 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=89.1
Q ss_pred cCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEE
Q 004127 34 DLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLV 107 (772)
Q Consensus 34 ~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V 107 (772)
.+....|.|.|.|++|++|..+... ..++|||+|++.+ .+.+|+...+|..|-+-+...|.-.. ....|.++|
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv 341 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTV 341 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEE
Confidence 4567788999999999999866432 3699999999975 36789999999999888888887654 578999999
Q ss_pred Ee-cCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 108 KD-KDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 108 ~d-~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
|- +.+. .+.|+|.+.+-+.+|.... ...-.||+|-...
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgss 381 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSS 381 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCc
Confidence 96 4555 8889999999999997652 3466899997653
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00025 Score=73.31 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=89.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeecCCCCCeeccEEEEEecc---C--------CCceEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLG-----NYKGTTKHFEKKSNPEWNQCFAFSKDR---I--------QASVLE 104 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~~---~--------~~~~L~ 104 (772)
.|.+.|+++.+++........|-|+++.+. .++.+|.++++|.+|.|+|.|.+.+.. . ....+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 577888888888765433346778888874 267899999999999999999999854 1 124689
Q ss_pred EEEEecCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 105 VLVKDKDVV--LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 105 i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
|++|++..+ +|.++|.+.+.|.-|... ......++|.+.. +.+. |.|.+.+.+.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~-----cei~e~~~l~DGR-K~vG-GkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENM-----CEICEYLPLKDGR-KAVG-GKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcc-----cchhhceeccccc-cccC-CeeEEEEEEe
Confidence 999999988 999999999999988654 2245566776532 2244 8888888764
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00059 Score=70.71 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=93.0
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---C--CEEEEeecccCCCCCeecceEEEEeeC-C-----------
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---G--QKWVRTRTIVDSFGPRWNEQYTWEVFD-P----------- 424 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---~--~~~~~T~~~~~t~~P~Wne~~~~~v~~-~----------- 424 (772)
...|++.|+++++++.. .+....|-|+++++ . ....+|.++++|.+|.|+|.|.+.+.. +
T Consensus 366 d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred hhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 35678888899988764 33345788999877 2 245789999999999999999999875 1
Q ss_pred CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcc-cccEEEEEEEE
Q 004127 425 CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR-KMGEVQLAVRF 492 (772)
Q Consensus 425 ~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f 492 (772)
...+.|++|....+ ..+|.++|.+.+.|..|++.-.+...++|.+ |.| ..|.+.+.+++
T Consensus 443 r~g~kfeifhkggf-----~rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGF-----NRSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRI 502 (523)
T ss_pred hcCeeEEEeecccc-----ccccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEE
Confidence 23589999997655 4589999999999999988777778888875 343 35788888876
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.11 Score=48.00 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=85.0
Q ss_pred cEEEEEEEEecCCCCC-ccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC--------------CcE
Q 004127 363 GILELGVLSAHGLTPM-KTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP--------------CTV 427 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~-~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~--------------~~~ 427 (772)
..|++.|+.++....- +..++...+--.+-+.+++++++|+.+.-+.+|.++|.|-|++... ++.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 5677888887764321 0001122233334556699999999999999999999999988632 467
Q ss_pred EEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceE--eeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 428 ITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVY--THSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 428 l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
|++-|.-.|..+ ...++|.-.++...+...... .....|.+......-..|.+++++...|
T Consensus 89 ihivli~~d~~~------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSG------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCC------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 899998877643 558999999999987543322 3444555543322224699999988755
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.055 Score=61.75 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=80.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeee-cCCCCCeeccE-EEEEe-ccCCCceEEEEEEe
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------YKGTTKHF-EKKSNPEWNQC-FAFSK-DRIQASVLEVLVKD 109 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~kT~~~-~~t~nP~Wne~-f~f~v-~~~~~~~L~i~V~d 109 (772)
+.+.|+|++|.=|..++. ..||.|.+=| ..+||+++ .++.||+|+|. |.|.- --+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 478999999998886653 4899999865 25688888 55669999975 77763 33334789999999
Q ss_pred cCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 110 KDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 110 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
.+ ..+||.-.+++..+..+ -+.+.|....+....+..|.+.+.+
T Consensus 779 Eg---gK~ig~RIlpvd~l~~G--------Yrhv~LRse~Nqpl~lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 779 EG---GKFIGQRILPVDGLNAG--------YRHVCLRSESNQPLTLPALFVYIVL 822 (1189)
T ss_pred cC---CceeeeeccchhcccCc--------ceeEEecCCCCCccccceeEEEEEe
Confidence 85 57999999999988755 2455777666554434566666644
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.084 Score=49.51 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=60.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeeecCCCCCeeccEEEEEec--c-CCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNYK----GTTKHFEKKSNPEWNQCFAFSKD--R-IQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~----~kT~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~i~V~d~~ 111 (772)
.++|+|+.+.++...+ .++-||++.+ |++. ..|+.+.. .++.|||.+.|++. + +.+..|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5889999999988643 4678888744 5532 35555543 68999999999873 3 34688999999976
Q ss_pred CC-----CCceeEEEEEEcccc
Q 004127 112 VV-----LDDLIGRVMFDLNEV 128 (772)
Q Consensus 112 ~~-----~d~~lG~~~i~l~~l 128 (772)
.. ....+|.+.++|-+-
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 42 124688888887763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.14 Score=47.94 Aligned_cols=89 Identities=18% Similarity=0.304 Sum_probs=61.8
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEEE----EeecccCCCCCeecceEEEEee--C-C-CcEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~~----~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v 432 (772)
..++|+|+++.++... ..+|-||.+.+ |++.. .|+.+.- .++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEE
Confidence 4688999999998642 24688887754 66543 4544443 68999999888776 3 3 67899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
|+...-. .+.+....||.+.++|-+-
T Consensus 81 ~~~~~~~--~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 81 CSVKGRK--GAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEEeccc--CCCCceEEEEEEEEEEECC
Confidence 9975311 0011345699999999773
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.18 Score=46.72 Aligned_cols=95 Identities=14% Similarity=0.260 Sum_probs=69.6
Q ss_pred CceEEEEEEEEEeecCCCCCCC--CCCccEE--EEEECCeeeeeccccCCCCCCceeceeEEEeeCCC------------
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKS--RFPEVFV--KAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF------------ 262 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~--~~~dpyv--~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~------------ 262 (772)
+...+|++.|..++-....-.. +..+.-. -+.+++|.++|+.+.. +.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4455799999999876533221 3334444 4455799999999987 999999999999986442
Q ss_pred -CCcEEEEEEEccCCCCCceeEEEEEecccccc
Q 004127 263 -EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQR 294 (772)
Q Consensus 263 -~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 294 (772)
.+.+.+.|...|..+...++|+..++...+..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~ 117 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC 117 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence 33677777777766666899999998887764
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.16 Score=48.61 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=63.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v 432 (772)
..++|+|+.+.+|... ....+-||.+.+ |++. ..|+.+.-+.++.|||.+.|++. + | ...|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 3688999999999752 123667777644 7765 35655555678999999888776 3 3 67899999
Q ss_pred EeCCcCCCCC----------CCCCCcccEEEEEecCcc
Q 004127 433 FDNGHIHGQG----------GGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 433 ~D~~~~~~~~----------~~~~~~~lG~~~i~l~~l 460 (772)
|+......+. ..+++..||.+.++|-+-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 9975422110 012357899998888763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.097 Score=50.08 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=51.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEE--EECCe----eeeeeeecCCCCCeeccEEEEEe--cc-CCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEV--KLGNY----KGTTKHFEKKSNPEWNQCFAFSK--DR-IQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v--~~~~~----~~kT~~~~~t~nP~Wne~f~f~v--~~-~~~~~L~i~V~d~~ 111 (772)
.++|+|+.+.++... ....+-||++ +.|++ ...|+.+..+.++.|||.+.|++ .+ +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 689999999999862 2346677775 44554 34676666567899999999986 23 34688999999975
Q ss_pred C
Q 004127 112 V 112 (772)
Q Consensus 112 ~ 112 (772)
.
T Consensus 87 ~ 87 (173)
T cd08693 87 K 87 (173)
T ss_pred c
Confidence 4
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.0032 Score=60.43 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHhccccCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccCCCCCCch
Q 004127 691 IGDLATQGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVP 757 (772)
Q Consensus 691 l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r~~~p~~~ 757 (772)
...++..+..++.++.|++|..|..++.+|.+.+.+..+++...++.+..+..+.=|.+-+.+...+
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~I 156 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEI 156 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455566888899999999999999999999999999989988777776666566666655543333
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.79 Score=42.34 Aligned_cols=119 Identities=21% Similarity=0.298 Sum_probs=79.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeee-cCCCCCeeccEEEEEec--------cCCCceEEEEE
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY---KGTTKHF-EKKSNPEWNQCFAFSKD--------RIQASVLEVLV 107 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~---~~kT~~~-~~t~nP~Wne~f~f~v~--------~~~~~~L~i~V 107 (772)
..+.|+|.+..+++. ....-+|+..-++. ..+|... ..+..-.|||.|.+.+. ......+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467899999999886 33456777766664 3555555 33446789999999862 12346789999
Q ss_pred EecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecC
Q 004127 108 KDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 108 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (772)
+..... +...+|.+.++|+++..... .....-++|.... ... ..|.+++.+....
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~~--~~~-a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKCK--KSN-ATLSISISLSELR 138 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccCC--CCC-cEEEEEEEEEECc
Confidence 988543 33699999999999986521 1234455666542 222 7788888776443
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.11 Score=59.45 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=73.4
Q ss_pred EEEEEEEEEeecCCCCCCCCCCccEEEEEECC-------eeeeeccccCCCCCCceece-eEEE-eeCCCCCcEEEEEEE
Q 004127 202 WYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-------QASRTRISPSKTINPMWNED-LMFV-AAEPFEEPLILTVED 272 (772)
Q Consensus 202 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~kT~~~~~~t~nP~wne~-f~f~-~~~~~~~~l~i~V~d 272 (772)
+.+.|+|++|.=|..++. ..||.|.+-+ +.+||+++..++.||+|+|. |.|. +--+....|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 458999999998877654 4899998853 57889999887999999975 6663 344566799999999
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004127 273 RVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311 (772)
Q Consensus 273 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 311 (772)
.. ..+||+-.+++..+.. ..+.+.|...
T Consensus 779 Eg----gK~ig~RIlpvd~l~~-------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNA-------GYRHVCLRSE 806 (1189)
T ss_pred cC----CceeeeeccchhcccC-------cceeEEecCC
Confidence 63 5799999999988863 4555666553
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.45 Score=44.79 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCCcEEEEEE--CCe----eeeeeeecCCCCCeeccEEEEEec--c-CCCceEEEEEEecCCC-CCceeEEEEEEcccc
Q 004127 59 GSCDPYVEVKL--GNY----KGTTKHFEKKSNPEWNQCFAFSKD--R-IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128 (772)
Q Consensus 59 ~~~dpyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 128 (772)
..++-||.+.+ +++ ..+|+.+.-+..+.|||.+.|++. + +.+..|.|+|||.... +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45778888755 443 236666666678899999999973 3 3468899999998765 677999999988764
Q ss_pred CCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcC
Q 004127 129 PKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAF 172 (772)
Q Consensus 129 ~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~ 172 (772)
. + .|. .|...+.+|....+|+..
T Consensus 108 ~-g------------~Lr--------~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 108 D-G------------TLR--------RGRQKLRVWPDVEADGSI 130 (159)
T ss_pred C-C------------cEe--------cCCEEEEEEeCCCCCCcc
Confidence 2 1 111 288888888776666543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.3 Score=40.86 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=77.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE---EEeecc-cCCCCCeecceEEEEeeC---C------CcEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW---VRTRTI-VDSFGPRWNEQYTWEVFD---P------CTVIT 429 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~---~~T~~~-~~t~~P~Wne~~~~~v~~---~------~~~l~ 429 (772)
-.+.|.|++..+++.. ...-||+...|+.. ..|... ..+..-.|||.|.+.+.- . .-.+.
T Consensus 7 f~~~l~i~~l~~~p~~-------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS-------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEEeECcCCC-------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 3677888888888751 23445666666653 455543 356789999999988761 1 23588
Q ss_pred EEEEeCCcCCCCCCCCCCcccEEEEEecCcccc--CceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 430 VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET--DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 430 i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
|.|+....-+ +...+|.+.|+|+++.+ .......++|... .+....+++.+++.+
T Consensus 80 ~~v~~~~~~~------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSG------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCC------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 8898874211 33699999999999976 3566777887653 234467888887755
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.67 Score=38.30 Aligned_cols=63 Identities=29% Similarity=0.402 Sum_probs=50.6
Q ss_pred CCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEcccc
Q 004127 61 CDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEV 128 (772)
Q Consensus 61 ~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l 128 (772)
++..+.+++.+ ...+|.-.. -.+..|++.|.+.++. +.+|+|.||=+|. ..+.|...+.|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 67889999998 577887653 3688999999999886 6889999998764 45778888888884
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.19 Score=50.67 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=71.3
Q ss_pred ecCcCceeEEEEEEEEeecCCCC--CCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEe
Q 004127 33 YDLVEQMQYLYVRVVKAKDLPGK--DVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKD 109 (772)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~--~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d 109 (772)
.+++...|+|.++++++++|.-. ..+-+-+-||++.+..+ +.||.+.....--.|.|+|..++.. .+.+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 46677889999999999999643 33556789999999874 6788887777778899999998865 4678888988
Q ss_pred cCCC-CCceeEEEEEEccccCC
Q 004127 110 KDVV-LDDLIGRVMFDLNEVPK 130 (772)
Q Consensus 110 ~~~~-~d~~lG~~~i~l~~l~~ 130 (772)
.+.- +.++.-...+.+..+..
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~r 143 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDR 143 (442)
T ss_pred cCchhhccccccchhhhhhhhh
Confidence 8765 55554333444444443
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.51 Score=44.46 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=59.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCe----eeeeeeecCCCCCeeccEEEEEe--cc-CCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVK--LGNY----KGTTKHFEKKSNPEWNQCFAFSK--DR-IQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~--~~~~----~~kT~~~~~t~nP~Wne~f~f~v--~~-~~~~~L~i~V~d~~ 111 (772)
.++|++....++...+ ....+-||.+. .|++ ...|+......++.|||.+.|++ .+ +.+..|.|.||+..
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5778888888876522 23456677664 4553 23444444447899999999986 23 34678999999976
Q ss_pred CC---CCceeEEEEEEcccc
Q 004127 112 VV---LDDLIGRVMFDLNEV 128 (772)
Q Consensus 112 ~~---~d~~lG~~~i~l~~l 128 (772)
.. ++..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 54 357899998888764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.82 E-value=1 Score=42.39 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=60.0
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGVF 433 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v~ 433 (772)
.++|.+....++... .....+-||.+.+ |++. ..|.....+.++.|||.+.|++. + | ...|.|.||
T Consensus 9 ~~~i~i~~~~~~~~~----~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~ 84 (156)
T cd08380 9 NLRIKIHGITNINLL----DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIY 84 (156)
T ss_pred CeEEEEEeecccccc----CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEE
Confidence 567778888777541 1224666776644 6653 24444433478999999999865 3 3 678999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
+.+..+ ..++..||.+.++|-+-
T Consensus 85 ~~~~~~----~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPG----SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCC----CCcceEEEEEeEEeEcc
Confidence 976421 01468899999999874
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.2 Score=42.68 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=58.0
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE---EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEEEe
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW---VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGVFD 434 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~---~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v~D 434 (772)
.++|+|.++..+ .. +......-||.+.+ |+.. .+|....-+.++.|||-+.|++. + | ...|.|.||+
T Consensus 11 ~friki~~~~~~-~~---~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIP-VL---PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeeccc-Cc---CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 577788887633 32 21222345555533 6554 36666666778999998888876 3 3 6789999999
Q ss_pred CCcCCC----------CCCCCCCcccEEEEEecCcc
Q 004127 435 NGHIHG----------QGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 435 ~~~~~~----------~~~~~~~~~lG~~~i~l~~l 460 (772)
...... +..++.+..||.+.+.|-+-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 632110 00123467888888888763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.49 Score=44.57 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=51.4
Q ss_pred CcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEEEeCCcCCCCCCCCCCcccEEEEE
Q 004127 386 TTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGVFDNGHIHGQGGGGKDSRIGKVRI 455 (772)
Q Consensus 386 ~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i 455 (772)
.+|-||.+.+ |++- ..|..+.-+..+.|||-+.|+|. + | ...|.|.|||.+.. ++...||.+.+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~------~~~~~vg~~~~ 102 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT------GKAVPFGGTTL 102 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC------CCceEEEEEEE
Confidence 4777877754 6654 36666665678899999888876 3 3 67899999997642 25678999999
Q ss_pred ecCcc
Q 004127 456 RLSTL 460 (772)
Q Consensus 456 ~l~~l 460 (772)
+|-+-
T Consensus 103 ~lFd~ 107 (159)
T cd08397 103 SLFNK 107 (159)
T ss_pred eeECC
Confidence 98764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.33 E-value=1.3 Score=42.26 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=45.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEE--EECCee---eeeeeecCCCCCeeccEEEEEec--c-CCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEV--KLGNYK---GTTKHFEKKSNPEWNQCFAFSKD--R-IQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v--~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~i~V~d~~ 111 (772)
.++|+|..+.++. .+......-||++ +.|++. .+|.....+.++.|||.+.|++. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4777888876433 2222233456665 335542 36666666778999999999872 3 34688999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.1 Score=42.83 Aligned_cols=88 Identities=20% Similarity=0.175 Sum_probs=60.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eeeeeec----CCCCCeeccEEEEEec---cCCCceEEEEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVK--LGNYK----GTTKHFE----KKSNPEWNQCFAFSKD---RIQASVLEVLV 107 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~--~~~~~----~kT~~~~----~t~nP~Wne~f~f~v~---~~~~~~L~i~V 107 (772)
.+.|+|..+.+++........+-||.+. .|++. ..|+... -...+.|||.+.|++. -+.+..|.|.+
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 6889999999999876545678888874 45542 3444322 1235779999999872 23468899999
Q ss_pred EecCCC----------CCceeEEEEEEcccc
Q 004127 108 KDKDVV----------LDDLIGRVMFDLNEV 128 (772)
Q Consensus 108 ~d~~~~----------~d~~lG~~~i~l~~l 128 (772)
|+.... ++..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 997643 235777777776653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.38 Score=55.92 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=83.8
Q ss_pred CCcCcEEEEEECCEE-EEeecccCC-CCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc
Q 004127 385 GTTDAYCVAKYGQKW-VRTRTIVDS-FGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET 462 (772)
Q Consensus 385 g~~dpyv~v~~~~~~-~~T~~~~~t-~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~ 462 (772)
..+++|+.+.+.... .+|..+.+. .+|.|.+.|..........+++.|-+.+..| ....+|.+.++...+..
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G------~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG------WSKRWGRVKISFLQYCS 209 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc------ceeEEEEeccchhhhhc
Confidence 347999999997765 688888887 7999999998888888999999999988764 68899999999999999
Q ss_pred CceEeeeEeeeecCCCCcccccEEEEEEEEeecc
Q 004127 463 DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSS 496 (772)
Q Consensus 463 ~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 496 (772)
+.....|+++...+.+...+.-.+.+.+.|.+..
T Consensus 210 ~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 210 GHRIGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred cccccceeeeeccCCccccCCcccceEEeeEeec
Confidence 8888999999776543332323455556665554
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=88.77 E-value=2 Score=41.09 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=61.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCccEEEEEE--CCeee----eecccc--C-CCCCCceeceeEEEee---CCCCCcEEEEE
Q 004127 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAIL--GNQAS----RTRISP--S-KTINPMWNEDLMFVAA---EPFEEPLILTV 270 (772)
Q Consensus 203 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----kT~~~~--~-~t~nP~wne~f~f~~~---~~~~~~l~i~V 270 (772)
.+.|+|.++.+++........|-||++.+ |++.. .|+... + -...+.|||...|.+. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999988765556788888854 55432 333211 1 1235779999988773 24466899999
Q ss_pred EEccCCC---------CCceeEEEEEecccc
Q 004127 271 EDRVAPN---------KDEVLGKCLIPLQAV 292 (772)
Q Consensus 271 ~d~d~~~---------~d~~iG~~~i~l~~l 292 (772)
|+....+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876543 457899998887764
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=88.48 E-value=3.6 Score=37.99 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=44.6
Q ss_pred cEEEE--EECCEE-----EEeecccCC-CCCeecceEEEEee--C-C-CcEEEEEEEeCCcCCCCCCCCCC----cccEE
Q 004127 389 AYCVA--KYGQKW-----VRTRTIVDS-FGPRWNEQYTWEVF--D-P-CTVITVGVFDNGHIHGQGGGGKD----SRIGK 452 (772)
Q Consensus 389 pyv~v--~~~~~~-----~~T~~~~~t-~~P~Wne~~~~~v~--~-~-~~~l~i~v~D~~~~~~~~~~~~~----~~lG~ 452 (772)
-||.+ ..|++. ..|..+.-+ .++.|||.+.|++. + | ...|.|.||+.+... .. ..||.
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~------~~~~~~~~lgw 77 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK------KSKKKKVPLGW 77 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST------TT--EEEEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC------ccccceeEEEE
Confidence 34444 336654 256555555 79999999888876 3 3 678999999976532 22 68999
Q ss_pred EEEecCcc
Q 004127 453 VRIRLSTL 460 (772)
Q Consensus 453 ~~i~l~~l 460 (772)
+.++|-+.
T Consensus 78 ~n~~lFd~ 85 (142)
T PF00792_consen 78 VNLPLFDY 85 (142)
T ss_dssp EEEESB-T
T ss_pred EEEEeECC
Confidence 99999875
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=87.92 E-value=2.4 Score=39.12 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=49.0
Q ss_pred eeeeecCC-CCCeeccEEEEEe--cc-CCCceEEEEEEecCCC-CC----ceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 75 TTKHFEKK-SNPEWNQCFAFSK--DR-IQASVLEVLVKDKDVV-LD----DLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 75 kT~~~~~t-~nP~Wne~f~f~v--~~-~~~~~L~i~V~d~~~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
.|+....+ .++.|||.+.|++ .+ +.+..|.|.||..+.. .. ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56666555 7999999999987 23 4568899999998776 43 6899999988765211 1
Q ss_pred ecCCCCceeeeEEEEEEEeeecC
Q 004127 146 EDRKGDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 146 ~~~~~~~~~~G~l~l~~~~~~~~ 168 (772)
. .|...+.++-....
T Consensus 90 -------~-~G~~~L~lW~~~~~ 104 (142)
T PF00792_consen 90 -------R-QGPQKLSLWPDEEP 104 (142)
T ss_dssp -------E-EEEEEEE-EET-TT
T ss_pred -------c-CCCEEEEEEcCCCC
Confidence 1 28888888665443
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=86.97 E-value=3.3 Score=35.57 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=48.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeecCCCCCeeccEEEEEec---cCCCceEEEEEEecC
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNY----KGTTKHFEKKSNPEWNQCFAFSKD---RIQASVLEVLVKDKD 111 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~L~i~V~d~~ 111 (772)
+.+.+..+.+.........++-||.+.+ |++ ...|+.+.....+.|||.+.|++. -+.+..|.|.||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5667777777766543333578888744 553 335666655667999999999863 334688999999864
|
Outlier of C2 family. |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.6 Score=39.03 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=33.5
Q ss_pred eeeeeeecCCCCCeeccEEEEEec--cCCCceEEEEEEecCCC
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKD--RIQASVLEVLVKDKDVV 113 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~L~i~V~d~~~~ 113 (772)
..+|-+...+.+|.|+|++.+.+. ......|.|++++....
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~ 96 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSN 96 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccc
Confidence 568888889999999999999873 33568999999987643
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.06 E-value=1.6 Score=44.27 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=56.9
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHI 438 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~ 438 (772)
..|.|.++++.++||..... -.+-..+-||+++.+.+ ..||.+......-.|.|.|...+.. ..++.+-||.|+..
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred ccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 34899999999999976522 12334789999999765 3677777666677788988887764 45688999999864
|
|
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=83.21 E-value=12 Score=31.19 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=57.0
Q ss_pred CCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccC
Q 004127 385 GTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD 463 (772)
Q Consensus 385 g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~ 463 (772)
|-++-.++++++++. .+|....- .+..|++.|++.+. .+..|.|.||=.|. ..+-|-..+.|.+...+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---------RslCav~~lrLEd~~~~ 75 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELE-RSRELEIAVYWRDW---------RSLCAVKFLKLEDERHE 75 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEee-cccEEEEEEEEecc---------hhhhhheeeEhhhhccc
Confidence 346778999998865 57776443 57889999999864 57789999987653 34566667777773222
Q ss_pred ceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 464 RVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 464 ~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
...+|. .+|.+..++.|
T Consensus 76 ----~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 76 ----VQLDME--------PQLCLVAELTF 92 (98)
T ss_pred ----ceeccc--------cccEEEEEEEe
Confidence 122222 34777777776
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=83.09 E-value=8.5 Score=33.46 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=50.4
Q ss_pred EEEEEECCEE-EEeecccCCCCCeecceEEEEeeCC--------CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 390 YCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDP--------CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 390 yv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~--------~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
||.+.+-... .-|.++. ..+|.+|-+..|.|... ...+.|+++..-. .....+|.+.|++.++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-------~d~~tla~~~i~l~~l 73 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-------SDFETLAAGQISLRPL 73 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-------S-EEEEEEEEE--SHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-------CCeEEEEEEEeechhh
Confidence 6777665544 4555554 88999999988888732 3679999998542 2578899999999998
Q ss_pred cc--CceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 461 ET--DRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 461 ~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
.. +..+.....|.+.. |. ..|.+...++.
T Consensus 74 l~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 74 LESNGERIHGSATLVGVS--GE-DFGTLEYWIRL 104 (107)
T ss_dssp HH--S--EEEEEEE-BSS--S--TSEEEEEEEEE
T ss_pred hcCCCceEEEEEEEeccC--CC-eEEEEEEEEEe
Confidence 53 33456666666543 22 56888877775
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=82.74 E-value=7.8 Score=33.26 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=44.9
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEEEe
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGVFD 434 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v~D 434 (772)
+.+.+..+++.... .....+|-||.+.+ |++. ..|..+.-...+.|||-+.|++. + | ...|.|.+|+
T Consensus 13 ~~~~~~~~~~~~l~---~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~ 89 (100)
T smart00142 13 LVITIALIHGIPLN---WSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYE 89 (100)
T ss_pred eEEEEEEeeCCCcc---cccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence 44566666666442 11122578887754 6654 35555554667999999888776 3 3 6789999999
Q ss_pred CC
Q 004127 435 NG 436 (772)
Q Consensus 435 ~~ 436 (772)
..
T Consensus 90 ~~ 91 (100)
T smart00142 90 VK 91 (100)
T ss_pred ee
Confidence 54
|
Outlier of C2 family. |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=81.99 E-value=4.9 Score=38.95 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=35.1
Q ss_pred EEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCc
Q 004127 399 WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 399 ~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~ 459 (772)
.+.|.+..++.+|.|+|+|.+.+.. +...|.|++++...-. +..++..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~---~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE---SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS---SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc---ccCccceeEEEEEEeee
Confidence 4678888899999999999998884 3578999999976532 11122799999999987
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=81.29 E-value=4 Score=39.33 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=32.8
Q ss_pred eeeeeeecCCCCCeeccEEEEEec--cCCCceEEEEEEecCC
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKD--RIQASVLEVLVKDKDV 112 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~L~i~V~d~~~ 112 (772)
.++|.+...+.+|.|+|++.+.+. ......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 468888999999999999999874 3356889999988654
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 772 | ||||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 1e-11 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 1e-11 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 2e-06 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 3e-05 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 8e-06 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 4e-05 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 1e-04 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 2e-04 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 6e-04 |
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 3e-48
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 30 SCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQ 89
S + V+ + L V+V+KA DL D +G DP+ ++LGN + T K NPEWN+
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62
Query: 90 CFAFSKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148
F F I VLEV V D+D D +G+V L + P Y L+++
Sbjct: 63 VFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNK 114
Query: 149 KGDKVKTGELMLAV 162
++ G + L +
Sbjct: 115 DLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 5e-18
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEV 421
+GIL++ VL A L D G +D +C+ + G ++T T+ + P WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 422 FDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR 481
D V+ V VFD + G +GKV I L ++ + + Y L
Sbjct: 69 KDIHDVLEVTVFD------EDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAF 120
Query: 482 KMGEVQLAVRF 492
K G + L +
Sbjct: 121 K-GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-17
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
++V +++A DLL +D S + F LGN +T K +NP WN+ F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDI- 71
Query: 263 EEPLILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKE 320
+ L +TV ED + LGK IPL ++ + + L+ + E
Sbjct: 72 HDVLEVTVFDEDGD--KPPDFLGKVAIPLLSI------RDGQPNCYVLKN------KDLE 117
Query: 321 TKFSSRIHLRI 331
F I+L +
Sbjct: 118 QAFKGVIYLEM 128
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 7e-41
Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 10/152 (6%)
Query: 20 GAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY------K 73
G + + D E + + VRV+ L KD+ G+ DPYV V L +
Sbjct: 1 GMATCAVEVFGLLED-EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTS 59
Query: 74 GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRI 132
TK +K NP+WN+ F Q L V D++ + DD +G+V L +P
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQ-HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTEN 118
Query: 133 PPDS-PLAPQWYRLEDRKGDKVKTGELMLAVW 163
P P + + L R G L L +
Sbjct: 119 PRLERPYTFKDFVLHPRSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 4e-14
Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 193 SKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQAS------RTRISPSKTI 246
+ VRV +I L D + +V+ L + + +T+ K++
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSL 69
Query: 247 NPMWNEDLMFVAAEPFEEPLILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTR 304
NP WNE+++F P + L+ V E+R+ +D+ LG+ +PL L +
Sbjct: 70 NPKWNEEILFR-VHPQQHRLLFEVFDENRL--TRDDFLGQVDVPLY----PLPTENPRLE 122
Query: 305 WFNLEKHVIVDGEKKETKFSSRIHLRIC 332
K ++ +++ + L++
Sbjct: 123 RPYTFKDFVLHPRSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-12
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW------VRTRTIVDSFGPRWNEQ 416
I+ + V++ GL D G +D Y V+T+TI S P+WNE+
Sbjct: 20 RIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 417 YTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRV---YTHSYPLL 473
+ V + VFD + +D +G+V + L L T+ +++
Sbjct: 77 ILFRVHPQQHRLLFEVFD------ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDF 130
Query: 474 VLHP--SGVRKMGEVQLAVRF 492
VLHP R G ++L + +
Sbjct: 131 VLHPRSHKSRVKGYLRLKMTY 151
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 7e-37
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQAS 101
+ + VV A+ L KD TGS DPYV V++G K TK NP W + F F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHN-SSD 77
Query: 102 VLEVLVKDKDVVL------------DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149
++V V D+D + DD +G+ + ++ + WY L+ R
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE-------MDVWYNLDKRT 130
Query: 150 GDKVKTGELMLAV 162
+G + L +
Sbjct: 131 DKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 5e-20
Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 27/158 (17%)
Query: 190 NIRSKVYLSPKLW--YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTIN 247
++ V W + + ++ AQ L DK+ + +V +G RT+ +N
Sbjct: 3 AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLN 61
Query: 248 PMWNEDLMFVAAEPFEEPLILTVED-----------RVAPNKDEVLGKCLIPLQAVQRRL 296
P+W E+ F + + + V D R D+ LG+ +I ++ + +
Sbjct: 62 PVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120
Query: 297 DHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLD 334
D W+NL+K ++ S I L I ++
Sbjct: 121 D------VWYNLDK------RTDKSAVSGAIRLHISVE 146
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 1e-18
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 350 LRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSF 409
++ + + + V+ A GL KD G++D Y + G+ RT+TI +
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQA---KDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60
Query: 410 GPRWNEQYTWEVFDPCTVITVGVFD-----NGHIHGQGGGGKDSRIGKVRIRLSTLETDR 464
P W E + +E + I V V D + + D +G+ I + TL +
Sbjct: 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE- 119
Query: 465 VYTHSYPLLVLHPSGVRKMGEVQLAV 490
Y L G ++L +
Sbjct: 120 -MDVWYNLDKRTDKSAVS-GAIRLHI 143
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 7e-37
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI 98
M L V V KAK ++ + YV +K+ N K TT + S P W Q F F +R+
Sbjct: 4 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 59
Query: 99 QASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148
L V V +K ++ D ++G V L + + + +W L+ +
Sbjct: 60 DLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQ 105
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-10
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
+ V + +A+ +K +V + N S T + P W +D MF
Sbjct: 6 LLCVGVKKAKFDGAQEKF---NTYVTLKVQNVKSTTIAV--RGSQPSWEQDFMFEINRL- 59
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEK 318
+ L + V ++ D ++G IPL+ +++ + P W L+ I+ +
Sbjct: 60 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP--GEWLTLDSQAIMADSE 112
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-36
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 40 QYLYVRVVKAKDL---PGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAF 93
V V++A + D+ + DPYVE+ + + + T+HF NP WN+ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 94 SKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149
D Q +VLE+ + D + V+D+ +G F ++ + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVT 113
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-15
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 19/136 (13%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEV 421
+ VL A +T D T D Y RTR + P WNE + + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 422 FDPCT-VITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGV 480
V+ + + D + D +G +S+++ +
Sbjct: 65 DPNQENVLEITLMDANY-------VMDETLGTATFTVSSMKVGEKKEVPFIF-------- 109
Query: 481 RKMGEVQLAVRFTCSS 496
++ E+ L + +S
Sbjct: 110 NQVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)
Query: 205 RVNIIEAQDLL---PSDKSRFPEVFVKAILG---NQASRTRISPSKTINPMWNEDLMFVA 258
V ++ A + D P+ +V+ + + RTR + INP+WNE F+
Sbjct: 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF-NNDINPVWNETFEFIL 64
Query: 259 AEPFEEPLILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEK 310
E L +T+ + V DE LG + +++ F +
Sbjct: 65 DPNQENVLEITLMDANYV---MDETLGTATFTVSSMKVGEKK----EVPFIFNQ 111
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-35
Identities = 70/302 (23%), Positives = 111/302 (36%), Gaps = 63/302 (20%)
Query: 29 LSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT---TKHFEKKSNP 85
S YD Q L V +++A +LP D+ G+ DPYV+V L K TK K NP
Sbjct: 10 YSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNP 67
Query: 86 EWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQW 142
+N+ F F + L + V D D D+IG +N V
Sbjct: 68 VFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWR 123
Query: 143 YRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLW 202
K ++ K G++ ++ A +
Sbjct: 124 DLQSAEKEEQEKLGDICFSLRYVPTAGK-------------------------------- 151
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASR-----TRISPSKTINPMWNEDLMF- 256
+ V I+EA++L D + +VK L R T I T+NP +NE F
Sbjct: 152 -LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFE 209
Query: 257 VAAEPFEE-PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH---------KPVNTRWF 306
V E ++ +++TV D K++ +GK + + L H +P+ +W
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWH 268
Query: 307 NL 308
L
Sbjct: 269 TL 270
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 3e-17
Identities = 60/264 (22%), Positives = 104/264 (39%), Gaps = 57/264 (21%)
Query: 205 RVNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMF--VAA 259
V II+A +L D + +VK L + T++ KT+NP++NE F +
Sbjct: 22 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKVPYS 80
Query: 260 EPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKK 319
E + L++ V D +K +++G+ +P+ +D V W +L+ EK+
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDLQSA-----EKE 131
Query: 320 ETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMK 379
E + I + + P+ G L + +L A L M
Sbjct: 132 EQEKLGDICFSLR-------------------------YVPTAGKLTVVILEAKNLKKM- 165
Query: 380 TKDGRGTTDAYCVAKY---GQKWV--RTRTIVDSFGPRWNEQYTWEV--FDPCTV-ITVG 431
D G +D Y G++ +T ++ P +NE +++EV V + V
Sbjct: 166 --DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 223
Query: 432 VFDNGHIHGQGGGGKDSRIGKVRI 455
V D GK+ IGKV +
Sbjct: 224 VLD------YDKIGKNDAIGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 5e-17
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAF--S 94
L V +++AK+L DV G DPYV++ L K T + NP +N+ F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 95 KDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRI--------PPDSPLAPQWYRL 145
++IQ + V V D D + +D IG+V N + P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 146 EDRK 149
+ +
Sbjct: 271 QVEE 274
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 8e-35
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQA- 100
L V V A ++P K G DP V V + K TK + + NP WN+ F I
Sbjct: 9 LRVIVESASNIP-KTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 101 --SVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGE 157
S L ++VKD + + + LIG L ++ P + L + KG
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKGQDTG-AT 124
Query: 158 LMLAV 162
+ L +
Sbjct: 125 IDLVI 129
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 5e-17
Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 15/140 (10%)
Query: 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYT 418
S G+L + V SA + K G D + + +T+ + + P WNE
Sbjct: 3 SGSSGMLRVIVESASNIPKTKF----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILE 58
Query: 419 WEVF----DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL- 473
+++ D + + + V D I G++ IG + L L D+ + Y L+
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETI------GQNKLIGTATVALKDLTGDQSRSLPYKLIS 112
Query: 474 VLHPSGVRKMGEVQLAVRFT 493
+L+ G + L + +
Sbjct: 113 LLNEKGQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 8e-16
Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 13/132 (9%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEP-- 261
+RV + A ++ P K P+ V I ++ +T+ +NP+WNE L F
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVD-NELNPVWNEILEFDLRGIPL 66
Query: 262 -FEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKE 320
F L + V+D +++++G + L+ L + + L + G+
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVALK----DLTGDQSRSLPYKLISLLNEKGQDTG 122
Query: 321 TKFSSRIHLRIC 332
+ I L I
Sbjct: 123 ----ATIDLVIG 130
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 1e-34
Identities = 84/303 (27%), Positives = 118/303 (38%), Gaps = 63/303 (20%)
Query: 29 LSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT---TKHFEKKSNP 85
+ Y L VR+++A DLP KD G DPYV++ L + TK K NP
Sbjct: 11 FALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNP 68
Query: 86 EWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQW 142
+N+ F F + L V D D DLIG+V+ D PPD PL W
Sbjct: 69 IFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---W 125
Query: 143 YRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLW 202
+ + +K GEL + + P
Sbjct: 126 RDILEGGSEKADLGELNFS---------------------------------LCYLPTAG 152
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASR-----TRISPSKTINPMWNEDLMF- 256
+ V II+A +L D + F + +VKA L ++ R T I T+NP +NE L+F
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVFD 211
Query: 257 VAAEPFEE-PLILTVEDRVAPNKDEVLGKCLIPLQAVQRR-LDH---------KPVNTRW 305
VA E E L + V D +EV+G C + +A +H KPV W
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV-EHW 270
Query: 306 FNL 308
L
Sbjct: 271 HQL 273
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 4e-18
Identities = 51/268 (19%), Positives = 98/268 (36%), Gaps = 54/268 (20%)
Query: 205 RVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISP--SKTINPMWNEDLMF--VAAE 260
V I++A DL D + F + +VK L + + KT+NP++NE F AE
Sbjct: 23 VVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE 82
Query: 261 PFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKE 320
+ L +V D ++ +++G+ ++ + P W ++ + E
Sbjct: 83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLEL--AEQPPDRPLWRDILEG------GSE 134
Query: 321 TKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKT 380
++ +C + P+ G+L + ++ A L M
Sbjct: 135 KADLGELNFSLC-------------------------YLPTAGLLTVTIIKASNLKAM-- 167
Query: 381 KDGRGTTDAYCVAKY---GQKWV--RTRTIVDSFGPRWNEQYTWEV--FDPCTV-ITVGV 432
D G +D Y A G++ +T ++ P +NE ++V V +++ V
Sbjct: 168 -DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAV 226
Query: 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTL 460
D G + IG R+
Sbjct: 227 VD------YDCIGHNEVIGVCRVGPEAA 248
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-34
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Query: 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD 96
+ L V V KAK ++ + YV +K+ N + TT + S P W Q F F +
Sbjct: 11 GILSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66
Query: 97 RIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK 152
R+ L V V +K ++ D ++G V L + + + +W L+ +
Sbjct: 67 RLDLG-LTVEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMA 118
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-08
Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
+ V + +A+ +K +V + N S T + P W +D MF
Sbjct: 15 LLCVGVKKAKFDGAQEKFNT---YVTLKVQNVESTTIAV--RGSQPSWEQDFMFEINRL- 68
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEK 318
+ L + V ++ D ++G IPL+ +++ + P W L+ I+ +
Sbjct: 69 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP--GEWLTLDSQAIMADSE 121
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 4e-31
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY------KGTTKHFEKKSNPEWNQC 90
+ + + V+V+ L KD+ G+ DPYV V L + TK +K NP+WN+
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 91 FAFSKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPD-SPLAPQWYRLEDR 148
F + + V D++ + DD +G+V L +P P P + + L R
Sbjct: 65 ILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 149 KGDKVKTGELMLAV 162
G L L +
Sbjct: 124 SHKSRVKGYLRLKM 137
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 1e-15
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 20/148 (13%)
Query: 356 QLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW------VRTRTIVDSF 409
+L ++ + V++ GL D G +D Y V+T+TI S
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 410 GPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRV---Y 466
P+WNE+ + V I VFD + +D +G+V + L L T+
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFDENRL------TRDDFLGQVDVPLYPLPTENPRMER 111
Query: 467 THSYPLLVLHPSGVRK--MGEVQLAVRF 492
+++ VLHP + G ++L + +
Sbjct: 112 PYTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 6e-14
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 12/165 (7%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQAS------RTRISPSKTINPMWNEDLMF 256
VRV +I L D + +V+ L + S +T+ K++NP WNE+++F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILF 67
Query: 257 VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDG 316
P ++ V D +D+ LG+ +PL L + K ++
Sbjct: 68 R-VLPQRHRILFEVFDENRLTRDDFLGQVDVPL----YPLPTENPRMERPYTFKDFVLHP 122
Query: 317 EKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPS 361
+++ + L++ DE+ + +L P L +P
Sbjct: 123 RSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPD 167
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 8/146 (5%)
Query: 33 YDLVEQMQY--LYVRVVKAKDL---PGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSN 84
+ +VE V V++A + D+ + DPYVE+ + + + T+HF N
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68
Query: 85 PEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYR 144
P WN+ F F D Q +VLE+ + D + V+D+ +G F ++ + + P
Sbjct: 69 PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 128
Query: 145 LEDRKGDKVKTGELMLAVWMGTQADE 170
+ L M E
Sbjct: 129 EMVLEMSLEVCSCPDLRFSMALCDQE 154
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 53.0 bits (126), Expect = 3e-07
Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 18/212 (8%)
Query: 192 RSKVYLSPKLWYVRVNIIEAQDLL---PSDKSRFPEVFVKAILG---NQASRTRISPSKT 245
V V ++ A + D P+ +V+ + + RTR +
Sbjct: 9 HIIVEHQYS-HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF-NND 66
Query: 246 INPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRW 305
INP+WNE F+ E L +T+ D DE LG + +++ +
Sbjct: 67 INPVWNETFEFILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125
Query: 306 FNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGIL 365
+ + S + L + D+ + + ++ K +G
Sbjct: 126 ---------QVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPK 176
Query: 366 ELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ 397
L + P+ G G V G
Sbjct: 177 NSEGLHSARDVPVVAILGSGGGFRAMVGFSGV 208
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 4e-07
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 11/113 (9%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTW 419
+ VL A +T D T D Y RTR + P WNE + +
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 420 EVFDP-CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYP 471
+ V+ + + D ++ D +G +S+++ +
Sbjct: 78 ILDPNQENVLEITLMDANYV-------MDETLGTATFTVSSMKVGEKKEVPFI 123
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-26
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKS-NPEWNQCFAFSKDRIQA 100
L V +V AK L D + DPYV++ + E PEWN+ F F+
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT- 70
Query: 101 SVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELM 159
+ L+ + DKDV DD +G L V + + P Y + + K GE+
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPV----FVEGSIPPTAYNVVKDEEYK---GEIW 123
Query: 160 LAV 162
+A+
Sbjct: 124 VAL 126
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-16
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFE 263
+ V ++ A+ L +D + +V+ Q ++ ++ P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 264 EPLILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKET 321
L + +D +D+ +G+ IPL+ V + +N+ K GE
Sbjct: 71 TELKAKIFDKDVG--TEDDAVGEATIPLEPV---FVEGSIPPTAYNVVKDEEYKGE---- 121
Query: 322 KFSSRIHLRIC 332
I + +
Sbjct: 122 -----IWVALS 127
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-16
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD-SFGPRWNEQYTWE 420
G LE+ ++SA GL + D D Y + ++ P WNE + +
Sbjct: 9 HGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 421 VFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGV 480
V + T + +FD + G +D +G+ I L + + + +V
Sbjct: 66 VSEGTTELKAKIFD------KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE--- 116
Query: 481 RKMGEVQLAVRFT 493
GE+ +A+ F
Sbjct: 117 EYKGEIWVALSFK 129
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 5e-26
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 7/130 (5%)
Query: 34 DLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAF 93
+ L + V+ AK K PYVEV + T+ ++P+W Q
Sbjct: 30 GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89
Query: 94 SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE--DRKG 150
S L V + D L+G D+ E K + L L+ K
Sbjct: 90 IVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLK--SNNMKLEEVVVTLQLGGDKE 145
Query: 151 DKVKTGELML 160
G+L +
Sbjct: 146 PTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 7e-17
Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 10/132 (7%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFE 263
+++ +I A+ P +V+ + Q+ +T T +P W + L +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP--V 94
Query: 264 EPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKF 323
L V D +LG + + + + K L+ G+K+ T+
Sbjct: 95 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEV-VVTLQLG----GDKEPTE- 148
Query: 324 SSRIHLRICLDG 335
+ L ICLDG
Sbjct: 149 -TIGDLSICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 1e-12
Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 10/128 (7%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTW 419
L++ V+SA K Y + +T ++ P+W + T
Sbjct: 33 TMKSQLQITVISAKLKEN---KKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89
Query: 420 EVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSG 479
V P + + V+ + + D +G + + ++ L G
Sbjct: 90 IV-TPVSKLHFRVWSHQTL------KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 142
Query: 480 VRKMGEVQ 487
++ E
Sbjct: 143 DKEPTETI 150
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 1e-23
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Query: 20 GAGSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL--------- 69
+ ITG+ +L YD + L + +++A++L +D G DP+V+V L
Sbjct: 1 ASHPITGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMV 56
Query: 70 -----GNYKGTTKHFEKKSNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVL-DDLIGR 120
YK TK+ +K NPEWNQ + S +++ LEV V D D +D +G
Sbjct: 57 VQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDR 148
V+ DL+ P+WY L+++
Sbjct: 117 VLIDLSSTSHLDN-----TPRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 8e-10
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 28/142 (19%)
Query: 191 IRSKVYLSPKLWYVR----VNIIEAQDLLPSDKSRFPEVFVKAIL--------------G 232
I ++ L + Y ++I++A++L+P D + + + FVK L
Sbjct: 5 ITGEIQLQ--INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62
Query: 233 NQASRTRISPSKTINPMWNEDLMFVA---AEPFEEPLILTVEDRVAPNKDEVLGKCLIPL 289
RT+ K++NP WN+ +++ + + ++ L +TV D + ++ LG+ LI L
Sbjct: 63 EYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
Query: 290 QAVQRRLDHKPVNTRWFNLEKH 311
H RW+ L++
Sbjct: 122 S----STSHLDNTPRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 27/129 (20%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCV--------------AKYGQKWVRTRTIVDS 408
G L + +L A L P D G +D + + RT+ + S
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 409 FGPRWNEQYTWEVFDP----CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDR 464
P WN+ ++ + V V+D + +G+V I LS+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRF------SSNDFLGEVLIDLSSTSHLD 128
Query: 465 VYTHSYPLL 473
YPL
Sbjct: 129 NTPRWYPLK 137
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 1e-22
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 26/142 (18%)
Query: 41 YLYVRVVKAKDLPGKDV-----------TGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWN 88
L +++ +A L T DPY+ + + + + G T +K ++P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 89 QCFAFSKDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147
F +E+ V + DD + E+ + W LE
Sbjct: 67 DEFVTDVC--NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED---WIDLE- 120
Query: 148 RKGDKVKTGELMLAVWM-GTQA 168
G++ + + + G+
Sbjct: 121 ------PEGKVYVIIDLSGSSG 136
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 9e-18
Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 28/144 (19%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEV-----------FVKAILGNQASRTRISPSKTINPMWN 251
+++ I EA L P+ S V ++ + + + KT +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 252 EDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311
++ + + L V D+ + C I + + + W +LE
Sbjct: 67 DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 312 VIVDGEKKETKFSSRIHLRICLDG 335
++++ I L G
Sbjct: 123 -------------GKVYVIIDLSG 133
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 3e-14
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 26/145 (17%)
Query: 363 GILELGVLSAHGLTPM--------KTKDGRGTTDAYCVAKYG-QKWVRTRTIVDSFGPRW 413
G+L++ + A L P + D Y + +T T + P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 414 NEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL--ETDRVYTHSYP 471
++++ +V + I + VF + I G D + I+ L R +
Sbjct: 66 HDEFVTDVCNG-RKIELAVFHDAPI------GYDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 472 LLVLHPSGVRKMGEVQLAVRFTCSS 496
L G+V + + + SS
Sbjct: 119 L--------EPEGKVYVIIDLSGSS 135
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 6e-22
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT---TKHFEKKSN 84
+ S YD Q L V +++A +LP D+ G+ DPYV+V L K TK K N
Sbjct: 32 QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 89
Query: 85 PEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQ 141
P +N+ F F + L + V D D D+IG +N V + +
Sbjct: 90 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEE 144
Query: 142 WYRLEDRK 149
W L+ +
Sbjct: 145 WRDLQSAE 152
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 200 KLWYV------RVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISP--SKTINPMWN 251
L Y V II+A +L D + +VK L + + KT+NP++N
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 93
Query: 252 EDLMFV--AAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
E F +E + L++ V D +K +++G+ +P+ V D V W +L+
Sbjct: 94 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 6e-07
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAK---YGQKWVRTRTIVDSFGPRWNEQYTW 419
L +G++ A L + D GT+D Y +K T+ + P +NEQ+T+
Sbjct: 42 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Query: 420 EVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473
+V + + V+D K IG+ ++ ++T++ V L
Sbjct: 99 KVPYSELGGKTLVMAVYDFD------RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-21
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT---TKHFEKKSN 84
+ S YD Q L V +++A +LP D+ G+ DPYV+V L K TK K N
Sbjct: 24 QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 85 PEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQ 141
P +N+ F F + L + V D D D+IG +N V + +
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEE 136
Query: 142 WYRLE 146
W L+
Sbjct: 137 WRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 8e-11
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 200 KLWYV------RVNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMW 250
L Y V II+A +L D + +VK L + T++ KT+NP++
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVF 84
Query: 251 NEDLMFV--AAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNL 308
NE F +E + L++ V D +K +++G+ +P+ V D V W +L
Sbjct: 85 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDL 140
Query: 309 E 309
+
Sbjct: 141 Q 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAK---YGQKWVRTRTIVDSFGPRWNEQYTW 419
L +G++ A L + D GT+D Y +K T+ + P +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 420 EVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473
+V + + V+D K IG+ ++ ++T++ V L
Sbjct: 91 KVPYSELGGKTLVMAVYDFD------RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-21
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKK 82
+ D + L V V AK+L D G DPYV++KL K TK +
Sbjct: 23 YIQAHID----REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS 78
Query: 83 SNPEWNQCFAFS-KDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAP 140
NPEWN+ F F K+ + L V + D D+ +D +G + F ++E+ K
Sbjct: 79 LNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV------D 132
Query: 141 QWYRLEDRK 149
W++L ++
Sbjct: 133 GWFKLLSQE 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 8e-13
Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 21/147 (14%)
Query: 178 SDAATVSGEGVAN---IRSKVYLSPKLWY----VRVNIIEAQDLLPSDKSRFPEVFVKAI 230
S + G G+ + R ++Y+ + V + +A++L+P D + + +VK
Sbjct: 2 SPGISGGGGGILDSMERRGRIYIQ--AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLK 59
Query: 231 L-----GNQASRTRISPSKTINPMWNEDLMF-VAAEPFEEPLILTVEDRVAPNKDEVLGK 284
L +T+ ++NP WNE F + + L + + D ++++ +G
Sbjct: 60 LIPDPKSESKQKTKTIK-CSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGS 118
Query: 285 CLIPLQAVQRRLDHKPVNTRWFNLEKH 311
+ L V WF L
Sbjct: 119 LSFGIS----ELQKAGV-DGWFKLLSQ 140
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-09
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCV-----AKYGQKWVRTRTIVDSFGPRWNEQY 417
+L + V A L PM D G +D Y + +T+TI S P WNE +
Sbjct: 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 87
Query: 418 TWEVF--DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473
+++ D ++V ++D ++ +G + +S L+ V + LL
Sbjct: 88 RFQLKESDKDRRLSVEIWD------WDLTSRNDFMGSLSFGISELQKAGV-DGWFKLL 138
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-21
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT---TKHFEKKSN 84
+ S Y+ Q L V+++KA++LP KD +G+ DP+V++ L K TK K N
Sbjct: 16 QFSVGYN--FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLN 73
Query: 85 PEWNQCFAF---SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAP 140
P WN+ F F +++ +L + V D D +D IG V LN+V + +
Sbjct: 74 PHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQT 128
Query: 141 QWYRLEDRKGDK 152
W L+
Sbjct: 129 FWKDLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-12
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 200 KLWYV------RVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISP--SKTINPMWN 251
+ Y V I++AQ+L D S + FVK L + K +NP WN
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 252 EDLMF---VAAEPFEEPLILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWF 306
E +F + + L L V DR ++++ +G+ IPL ++D + T W
Sbjct: 78 ETFLFEGFPYEKVVQRILYLQVLDYDRF--SRNDPIGEVSIPL----NKVDLTQMQTFWK 131
Query: 307 NLEKH 311
+L+
Sbjct: 132 DLKPS 136
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIVDSFGPRWNEQYTW 419
L + ++ A L D GT+D + + + T+ + P WNE + +
Sbjct: 26 STLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Query: 420 EVFDPCTVIT----VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
E F V+ + V D ++ IG+V I L+ ++ ++ T L
Sbjct: 83 EGFPYEKVVQRILYLQVLD------YDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 2e-21
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 41 YLYVRVVKAKDLPGKDV----------TGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQ 89
YL VR+ +A L DPY+ V + + G T +K + P +N+
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 90 CFAFSKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148
F + LE+ V + + D + E+ + S W LE
Sbjct: 90 EFCA--NVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRT-TGASDTFEGWVDLE-- 144
Query: 149 KGDKVKTGELMLAV 162
G++ + +
Sbjct: 145 -----PEGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 2e-20
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 27/144 (18%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEV----------FVKAILGNQ-ASRTRISPSKTINPMWN 251
Y+RV I EA L P+ S + ++ + +T KT P +N
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQ-KTNKPTYN 88
Query: 252 EDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311
E+ + L L V D + C + Q + R W +LE
Sbjct: 89 EEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE 146
Query: 312 VIVDGEKKETKFSSRIHLRICLDG 335
++ + I L G
Sbjct: 147 -------------GKVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 4e-15
Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 23/162 (14%)
Query: 343 STHYSSDL--RPTAKQLWKPSIGILELGVLSAHGLTPM-------KTKDGRGTTDAYCVA 393
H+SS L R + G L + + A GL P K G D Y
Sbjct: 7 HHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTV 66
Query: 394 KYGQKWV-RTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGK 452
Q V +T T + P +NE++ V D + + VF + G D +
Sbjct: 67 SVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPL------GYDHFVAN 119
Query: 453 VRIRLSTLETDRVYTHSYPLLV-LHPSGVRKMGEVQLAVRFT 493
++ L + ++ V L P G+V + + T
Sbjct: 120 CTLQFQELLRTTGASDTFEGWVDLEPE-----GKVFVVITLT 156
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-21
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 20/141 (14%)
Query: 21 AGSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKG 74
+GS G + +D + L V ++ AKDLP ++ +PYV++ K
Sbjct: 3 SGSSGGQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKR 60
Query: 75 TTKHFEKKSNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVLD---DLIGRVMFDLNEV 128
TK +K P+WNQ F + + + +LE+ + D+ V + + +G ++ +L
Sbjct: 61 RTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120
Query: 129 PKRIPPDSPLAPQWYRLEDRK 149
P WY+L+
Sbjct: 121 ------LLDDEPHWYKLQTHD 135
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 200 KLWYV------RVNIIEAQDLLPSDKSRFPEVFVKAIL-----GNQASRTRISPSKTINP 248
KLW+ V I+ A+DL + R +VK RT+ KT+ P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEP 71
Query: 249 MWNEDLMFVAAEPFEE----PLILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVN 302
WN+ ++ + E L +T+ + RV + E LG+ LI L+ LD +P
Sbjct: 72 KWNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL--LDDEP-- 126
Query: 303 TRWFNLEKH 311
W+ L+ H
Sbjct: 127 -HWYKLQTH 134
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 17/120 (14%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIVDSFGPRWNEQY 417
L + +L A L + + Y + + RT+T+ + P+WN+ +
Sbjct: 21 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
Query: 418 TWEVFDPCTVIT----VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473
+ + ++D + + +G++ I L T D H Y L
Sbjct: 78 IYSPVHRREFRERMLEITLWD----QARVREEESEFLGEILIELETALLDDE-PHWYKLQ 132
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 24 ITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTK 77
++G + +D + L V ++ AKDLP ++ +PYV++ K TK
Sbjct: 3 LSGQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 78 HFEKKSNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVLD---DLIGRVMFDLNEVPKR 131
+K P+WNQ F + + + +LE+ + D+ V + + +G ++ +L
Sbjct: 61 TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA--- 117
Query: 132 IPPDSPLAPQWYRLE 146
P WY+L+
Sbjct: 118 ---LLDDEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-12
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 26/136 (19%)
Query: 191 IRSKVYLSPKLWYV------RVNIIEAQDLLPSDKSRFPEVFVKAIL-----GNQASRTR 239
+ ++ + LW+ V I+ A+DL + R +VK RT+
Sbjct: 3 LSGQLSIK--LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 240 ISPSKTINPMWNEDLMFVAAEPFEE----PLILTV--EDRVAPNKDEVLGKCLIPLQAVQ 293
KT+ P WN+ ++ E L +T+ + RV + E LG+ LI L+
Sbjct: 61 TVK-KTLEPKWNQTFIYSPV-HRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 118
Query: 294 RRLDHKPVNTRWFNLE 309
LD +P W+ L+
Sbjct: 119 --LDDEPH---WYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 6e-05
Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 17/119 (14%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIVDSFGPRWNEQY 417
L + +L A L + + Y + + RT+T+ + P+WN+ +
Sbjct: 18 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
Query: 418 TWEVFDPCT----VITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
+ ++ + ++D + + +G++ I L T D H Y L
Sbjct: 75 IYSPVHRREFRERMLEITLWDQARV----REEESEFLGEILIELETALLDDE-PHWYKL 128
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 5e-20
Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 18/142 (12%)
Query: 13 KETSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL--- 69
+ S +GA I +++ YD E+ + + +++ +L + V +
Sbjct: 21 SDESEAVGATRI---QIALKYD--EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPC 75
Query: 70 ---GNYKGTTKHFEKKSNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMF 123
T+ + +N+ F S + L V V D ++ +G
Sbjct: 76 SESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQI 135
Query: 124 DLNEVPKRIPPDSPLAPQWYRL 145
L EV + +WY L
Sbjct: 136 SLAEV----CRSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL------GNQASRTRISPSKTINPMWNEDLMF-VA 258
+ II+ +L + + +V ++ + RTR + ++NE ++
Sbjct: 47 ILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFNEVFWVSMS 105
Query: 259 AEPFEE-PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNL 308
+ L + V + +E LG I L V +TRW+NL
Sbjct: 106 YPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC---RSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 23/123 (18%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYC------VAKYGQKWVRTRTIVDSFGPRWNEQ 416
+ ++ L+ + + ++ RTR + S +NE
Sbjct: 43 KQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEV 99
Query: 417 YTWEVFDPCTVIT-----VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE-TDRVYTHSY 470
+ + + V V + +G +I L+ + + T Y
Sbjct: 100 FWVSM--SYPALHQKTLRVDVCTTDRS------HLEECLGGAQISLAEVCRSGERSTRWY 151
Query: 471 PLL 473
LL
Sbjct: 152 NLL 154
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 5e-20
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKK 82
+ S YD + L +++AK L D G DPYV++ L + K TK
Sbjct: 19 EFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNT 76
Query: 83 SNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPL 138
NP WN+ + +++ +Q L + V D+D ++ IG F L ++ +
Sbjct: 77 RNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN--- 133
Query: 139 APQWYRLE 146
LE
Sbjct: 134 --FNICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 174 DAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAIL-- 231
+++ SD AT G + + ++ II A+ L P D + + +VK L
Sbjct: 5 NSYDSDQATTLGA----LEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 60
Query: 232 ---GNQASRTRISPSKTINPMWNEDLMFVA---AEPFEEPLILTVEDRVAPNKDEVLGKC 285
+ RT+ T NP+WNE L + + + L ++V D +E +G+
Sbjct: 61 GASKSNKLRTKTLR-NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGET 119
Query: 286 LIPLQAVQRRLDHKPVNTRWFNLEKHV 312
L ++L LE+ +
Sbjct: 120 RFSL----KKLKANQRKNFNICLERVI 142
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 18/119 (15%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIVDSFGPRWNEQY 417
L+ ++ A GL PM D G D Y +RT+T+ ++ P WNE
Sbjct: 29 SNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85
Query: 418 TWEVFDPC----TVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
+ + + V D G + IG+ R L L+ ++ + L
Sbjct: 86 QYHGITEEDMQRKTLRISVCDED------KFGHNEFIGETRFSLKKLKANQRKNFNICL 138
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 5e-20
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 4 SPQAIDFALKETSPKIGAGSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCD 62
S + + +E +IG G +S Y Q L V +++ L D G D
Sbjct: 2 SARGMALYEEEQVERIGDIEERGKILVSLMYS--TQQGGLIVGIIRCVHLAAMDANGYSD 59
Query: 63 PYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL- 114
P+V++ L K T+ +K NPE+N+ F + + L++ V D D+
Sbjct: 60 PFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKS 119
Query: 115 DDLIGRVMFDLNEVPKRIP--------PDSPLAPQWYRLEDRK 149
+D IG ++ +R+ D + +W++L++
Sbjct: 120 NDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQLQNEN 161
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 26/148 (17%)
Query: 183 VSGEGVANIRSKVYLSPKLWYV------RVNIIEAQDLLPSDKSRFPEVFVKAILGNQAS 236
V G R K+ +S L Y V II L D + + + FVK L
Sbjct: 14 VERIGDIEERGKILVS--LMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMG 71
Query: 237 R-----TRISPSKTINPMWNEDLMF-VAAEPFEE-PLILTVEDRVAPNKDEVLGKCLIPL 289
+ T+I KT+NP +NE+ + + + L ++V D ++ +G C + +
Sbjct: 72 KKAKHKTQIKK-KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
Query: 290 QAVQRRLDH---------KPVNTRWFNL 308
A RL H K + RW L
Sbjct: 131 SAKGERLKHWYECLKNKDKKI-ERWHQL 157
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 1e-19
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 29 LSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKS 83
LS Y+ + V ++KA++L D+ G+ DPYV+V L K T ++
Sbjct: 7 LSLCYN--PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNL 64
Query: 84 NPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIP------- 133
NP +N+ FAF ++++ + + + V DKD + +D+IG++ P +
Sbjct: 65 NPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIA 124
Query: 134 -PDSPLAPQWYRLE 146
P P+A QW++L+
Sbjct: 125 RPRQPVA-QWHQLK 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-12
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASR-----TRISPSKTINPMWNEDLMF-VAA 259
VNII+A++L D + +VK L + R T + +NP++NE F +
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK-RNLNPIFNESFAFDIPT 78
Query: 260 EPFEEP-LILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH---------KPVNTRWFNLE 309
E E +I+TV D+ ++++V+GK + ++ + H +PV +W L+
Sbjct: 79 EKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPV-AQWHQLK 137
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 3e-19
Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 18/143 (12%)
Query: 15 TSPKIGAGSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---- 69
+S G+ + YD Q L+V ++A + G CD YV+ +
Sbjct: 2 SSGSSGSWNQAPKLHYCLDYD--CQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRT 56
Query: 70 GNYKGTTKHFEKKSNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLN 126
G+ + T +++ + W + +++ + + L + ++ D + G + L+
Sbjct: 57 GSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLD 116
Query: 127 EVPKRIPPDSPLAPQWYRLEDRK 149
+ QW L+
Sbjct: 117 GTSVPLGAA-----QWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 205 RVNIIEAQDLLPSDKSRFPEVFVKAIL----GNQASRTRISPSKTINPMWNEDLMFVAAE 260
V +EA + + +V+ + G+ ++T + + ++ W E L+
Sbjct: 29 FVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKK-RQLHTTWEEGLVLPL-- 82
Query: 261 PFEEP----LILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
EE L LT+ ++ V G+ + L +W L+
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGL----DGTSVPLGAAQWGELK 131
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 3e-19
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 29 LSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKS 83
S Y L V +++AK+L DV G DPYV++ L K T +
Sbjct: 16 FSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTL 73
Query: 84 NPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRI-------- 132
NP +N+ F+F ++IQ + V V D D + +D IG+V N +
Sbjct: 74 NPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLA 133
Query: 133 PPDSPLAPQWYRLEDR-KGDKV 153
P P+A QW+ L+ + D +
Sbjct: 134 NPRRPIA-QWHTLQVEEEVDAM 154
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-12
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASR-----TRISPSKTINPMWNEDLMF-VAA 259
V I+EA++L D + +VK L R T I T+NP +NE F V
Sbjct: 29 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KNTLNPYYNESFSFEVPF 87
Query: 260 EPFEEP-LILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH---------KPVNTRWFNLE 309
E ++ +++TV D K++ +GK + + L H +P+ +W L+
Sbjct: 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHTLQ 146
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 6e-19
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTG-SCDPYVEVKLGNYKGT---TKHFEKKS 83
S Y+ + + V + +A+ LP D + DPY+++ + K T+ K
Sbjct: 12 FFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTL 69
Query: 84 NPEWNQCFAF---SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVP 129
+P +++ F F +IQ L + D DD+IG V+ L+ +
Sbjct: 70 DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 200 KLWYV------RVNIIEAQDLLPSD-KSRFPEVFVKAILGNQAS---RTRISPSKTINPM 249
L Y VNI EA+ L D +S + ++K + + +TR+ KT++P
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPA 72
Query: 250 WNEDLMFVAAEPFE---EPLILTVEDRVAPNKDEVLGKCLIPLQAVQ 293
++E F + L T+ ++D+++G+ LIPL ++
Sbjct: 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAK---YGQKWVRTRTIVDSFGPRWNEQYTW 419
+ + A GL M + T+D Y + V+TR + + P ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
Query: 420 EVFDPCTV----ITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475
+ + + +D IG+V I LS +E ++
Sbjct: 80 YGIPYTQIQELALHFTILSFDRF------SRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133
Query: 476 HPS 478
PS
Sbjct: 134 GPS 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 6e-19
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 19/147 (12%)
Query: 17 PKIGAGSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----G 70
+GS G +L+ + Q L V V ++L GS DPYV + L
Sbjct: 2 SSGSSGSPLGQIQLTIRHS--SQRNKLIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRR 58
Query: 71 NYKGTTKHFEKKSNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL---DDLIGRVMFDL 125
+ + T +K NP ++Q F F S +Q L+V VK+ L L+G+V+ L
Sbjct: 59 SGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL 118
Query: 126 NEVPKRIPPDSPLAPQWYRLEDRKGDK 152
QWY L + G
Sbjct: 119 ASEELAKG-----WTQWYDLTEDSGPS 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 200 KLWYV------RVNIIEAQDLLPSDKSRFPEVFVKAIL-----GNQASRTRISPSKTINP 248
+ + V + ++L+ + + +V+ L + +T +S KT+NP
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSK-KTLNP 73
Query: 249 MWNEDLMFVAAEPFEE----PLILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVN 302
++++ F E L + V +LGK L+ L + +
Sbjct: 74 VFDQSFDFSV--SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE----ELAKGW 127
Query: 303 TRWFNLEKH 311
T+W++L +
Sbjct: 128 TQWYDLTED 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 20/121 (16%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIVDSFGPRWNE 415
L + V + L +D Y + G++ +T + P +++
Sbjct: 24 NKLIVVVHACRNLIAF----SEDGSDPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFDQ 77
Query: 416 QYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
+ + V + V V + G +GKV + L++ E + +T Y L
Sbjct: 78 SFDFSVSLPEVQRRTLDVAVKN----SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDL 133
Query: 473 L 473
Sbjct: 134 T 134
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 6e-19
Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 10/125 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNYKGTTKHFEKKSNPEWNQCFAFSKDRIQ 99
+ + V+ AK+L KD DP+ ++ + +T + +P+WNQ + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66
Query: 100 ASVLEVLVKDKDVVLDD----LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKT 155
+ + V + + +G V N + + D+ +
Sbjct: 67 --SITISVWNHKKIHKKQGAGFLGCVRLLSNAISR--LKDTGYQRLDLCKLNPSDTDAVR 122
Query: 156 GELML 160
G++++
Sbjct: 123 GQIVV 127
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-11
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAIL--GNQASRTRISPSKTINPMWNEDLMFVAAEP 261
+R+ ++ A++L D R P+ F K ++ Q T T++P WN+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVK-NTLDPKWNQHYDLY--VG 63
Query: 262 FEEPLILTV--EDRVAPNKDE-VLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEK 318
+ + ++V ++ + LG + A+ K + +L K D +
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAIS---RLKDTGYQRLDLCKLNPSDTDA 120
Query: 319 K 319
Sbjct: 121 V 121
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKWVRTRTIVDSFGPRWNEQYTWEVF 422
+ L VL A L D D + + T T+ ++ P+WN+ Y V
Sbjct: 7 IRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV- 62
Query: 423 DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL--ETDRVYTHSYPLLVLHPSGV 480
IT+ V+++ IH + G G +G VR+ + + D Y +
Sbjct: 63 GKTDSITISVWNHKKIHKKQGAG---FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTD 119
Query: 481 RKMGEVQLAVRF 492
G++ ++++
Sbjct: 120 AVRGQIVVSLQT 131
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 8e-19
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 17/140 (12%)
Query: 19 IGAGSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKL-----GN 71
+G +TG S Y+ +Q Q L V V + L D +PYV+ L
Sbjct: 3 LGNIFVTGRIAFSLKYE--QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQ 60
Query: 72 YKGTTKHFEKKSNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEV 128
K T NP +++ + + + L+ V + +G ++
Sbjct: 61 GKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW 120
Query: 129 PKRIPPDSPLAPQWYRLEDR 148
L +
Sbjct: 121 KLDKK-----LDHCLPLHGK 135
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 8e-08
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 25/147 (17%)
Query: 187 GVANIRSKVYLSPKLWYV------RVNIIEAQDLLPSDKSR-FPEVFVKAILGNQASR-- 237
G + ++ S L Y V++ E L +D+++ +VK L SR
Sbjct: 4 GNIFVTGRIAFS--LKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQG 61
Query: 238 ---TRISPSKTINPMWNEDLMFVAAEPFEEP----LILTVEDRVAPNKDEVLGKCLIPLQ 290
T I T+NP+++E L + P L +V ++ LG+ I +
Sbjct: 62 KRKTSIKR-DTVNPLYDETLRY--EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMD 118
Query: 291 AVQRRLDHKPVNTRWFNLEKHVIVDGE 317
L + + E
Sbjct: 119 ----SWKLDKKLDHCLPLHGKISAESE 141
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 20/120 (16%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIVDSFGPRWNE 415
L + V H L + + ++ Y ++ G++ +T D+ P ++E
Sbjct: 23 QSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYDE 78
Query: 416 QYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
+E+ + + V+ +G G+++ +G+ I++ + + D+ H PL
Sbjct: 79 TLRYEIPESLLAQRTLQFSVWHHG------RFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 9e-19
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 20 GAGSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYK 73
+ + G +L + D Q + L + +++ K L K G+CDPYV++ L
Sbjct: 8 HSHKVQGAGQLRLSID--AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRH 64
Query: 74 GTTKHFEKKSNPEWNQCFAFSKDRIQAS-VLEVLVKDKDVVL--DDLIGRVMFDLNEVPK 130
T+ +P +++ F F L V V ++ LIG + F + +
Sbjct: 65 QKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT 124
Query: 131 RIPPDSPLAPQWYRLEDRK 149
PD ++ WY L
Sbjct: 125 ---PDKEIS-GWYYLLGEH 139
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 28/158 (17%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 177 HSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAIL----- 231
H + +G + ++ + + + ++IIE + L+ + +VK L
Sbjct: 4 HHHHHSHKVQG--AGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDS 60
Query: 232 GNQASRTRISPSKTINPMWNEDLMF-VAAEPFEEPLILTVEDRVAPNK-DEVLGKCLIPL 289
+ +T+ P +P ++E F V E ++ L++TV +R + ++ ++G +
Sbjct: 61 RLRHQKTQTVP-DCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGV 119
Query: 290 QAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRI 327
+++ K + + W+ L G K K + R
Sbjct: 120 KSLL--TPDKEI-SGWYYLLGE--HLGRTKHLKVARRR 152
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 21/121 (17%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIVDSFGPRWNE 415
+L L ++ GL GT D Y ++ + +T+T+ D P ++E
Sbjct: 27 RVLLLHIIEGKGLISK----QPGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHE 80
Query: 416 QYTWEVF--DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET-DRVYTHSYPL 472
+ + V D + V V++ + IG + + +L T D+ + Y L
Sbjct: 81 HFFFPVQEEDDQKRLLVTVWNRA-----SQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135
Query: 473 L 473
L
Sbjct: 136 L 136
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-18
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 25/154 (16%)
Query: 16 SPKIGAG-----SITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL 69
SP I G S G+ +S Y L V V+KA+ LP DV+G DPYV+V L
Sbjct: 2 SPGISGGGGGIPSGRGELLVSLCYQ--STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNL 59
Query: 70 GN-----YKGTTKHFEKKSNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRV 121
+ K T + N +N+ F F + ++ +E LV D + +++IGR+
Sbjct: 60 YHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRL 119
Query: 122 MFDLNEVPKRIP--------PDSPLAPQWYRLED 147
+ P +A +W+ L D
Sbjct: 120 VLGATAEGSGGGHWKEICDFPRRQIA-KWHMLCD 152
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-12
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 26/147 (17%)
Query: 184 SGEGVANIRSKVYLSPKLWYV------RVNIIEAQDLLPSDKSRFPEVFVKAILGNQASR 237
G G+ + R ++ +S L Y V +++A+ L SD S + +VK L + R
Sbjct: 8 GGGGIPSGRGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKR 65
Query: 238 -----TRISPSKTINPMWNEDLMF-VAAEPFEEP-LILTVEDRVAPNKDEVLGKCLIPLQ 290
T + T N ++NE +F + E EE + V D +++EV+G+ ++
Sbjct: 66 ISKKKTHVKK-CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124
Query: 291 AVQRRLDH---------KPVNTRWFNL 308
A H + + +W L
Sbjct: 125 AEGSGGGHWKEICDFPRRQI-AKWHML 150
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 6e-18
Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 20/135 (14%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLP-------GKDVTGSCDPYVEVKLGNYKGT---TK 77
S YD +L VRV++A+DLP + +PYV++ L + T
Sbjct: 16 HFSTQYD--LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTG 73
Query: 78 HFEKKSNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPP 134
K P + + + F Q L + V D D +IG+V L EV
Sbjct: 74 VKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL---- 129
Query: 135 DSPLAPQWYRLEDRK 149
W L
Sbjct: 130 -VKGGHWWKALIPSG 143
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 7e-07
Identities = 30/127 (23%), Positives = 44/127 (34%), Gaps = 21/127 (16%)
Query: 200 KLWYV------RVNIIEAQDLLP-------SDKSRFPEVFVKAILGNQASRTRISP--SK 244
Y V +IEA+DL P +VK L ++ + K
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77
Query: 245 TINPMWNEDLMFV--AAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVN 302
T P++ E F E L+LTV D ++ V+GK +PL +D
Sbjct: 78 TQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL----CEVDLVKGG 133
Query: 303 TRWFNLE 309
W L
Sbjct: 134 HWWKALI 140
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 363 GILELGVLSAHGLTPM----KTKDGRGTTDAYCVAKY---GQKWVRTRTIVDSFGPRWNE 415
L + V+ A L P ++ ++ Y + +T + P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 416 QYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
+YT+E+ + + V D + IGKV + L ++ + L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFD------KFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 9e-17
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKK 82
KLS +Y L++ V+ KDL +D +PYV+ L K TK K
Sbjct: 12 KLSVSYRN----GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKT 66
Query: 83 SNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPL 138
NP +N+ + SK+ ++ L++ V + + + +G + L +
Sbjct: 67 RNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKE----- 121
Query: 139 APQWYRLEDR 148
+WY+L
Sbjct: 122 TVKWYQLTAA 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 22/131 (16%)
Query: 192 RSKVYLSPKLWYVR----VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASR--TRISP 242
V LS + Y + ++ +DL+ D + P +VK L ++ S+ T+IS
Sbjct: 8 SGAVKLS--VSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISR 64
Query: 243 SKTINPMWNEDLMFVAAEPFEEP----LILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH 298
KT NP +NE L++ + E L L+V + ++ LG +PL + +
Sbjct: 65 -KTRNPTFNEMLVY-SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPL----KDFNL 118
Query: 299 KPVNTRWFNLE 309
+W+ L
Sbjct: 119 SKETVKWYQLT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 23/122 (18%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYC-------VAKYGQKWVRTRTIVDSFGPRWNE 415
G L + V+ L DG + Y K ++ +T+ + P +NE
Sbjct: 20 GTLFIMVMHIKDLVTE---DG-ADPNPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFNE 73
Query: 416 QYTWEVFDPCTVIT----VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYP 471
+ + T+ + V ++ +G + + L + Y
Sbjct: 74 MLVYSGYSKETLRQRELQLSVLSAE------SLRENFFLGGITLPLKDFNLSKETVKWYQ 127
Query: 472 LL 473
L
Sbjct: 128 LT 129
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-13
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKL-----GNYKGTTKHFEK 81
++ + L V V++A+ L K + + PYV+V L K T+ K
Sbjct: 22 QIGMED----KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK 77
Query: 82 KSNPEWNQCFAFSKDRIQASVLEVLVK-DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLA 139
+P + Q F + Q VL+V+V D + +G L E+
Sbjct: 78 TLDPLYQQSLVFDES-PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSM-----V 131
Query: 140 PQWYRLEDR 148
WY+L
Sbjct: 132 IGWYKLFPP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 3e-08
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 206 VNIIEAQDLLPSDKSR-FPEVFVKAILGNQASR-----TRISPSKTINPMWNEDLMFVAA 259
V +I A+ L S+ P +VK L + TRI+ KT++P++ + L+F
Sbjct: 34 VEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR-KTLDPLYQQSLVF-DE 91
Query: 260 EPFEEPLILTV---EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNL 308
P + L + V R+ +G I L LD + W+ L
Sbjct: 92 SPQGKVLQVIVWGDYGRMD--HKCFMGVAQILL----EELDLSSMVIGWYKL 137
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 8e-08
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 14/140 (10%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAK--YGQKWV---RTRTIVDSFGPRWNEQY 417
G LE+ V+ A LT + T Y + +TR + P + +
Sbjct: 30 GQLEVEVIRARSLTQKP--GSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87
Query: 418 TWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP 477
++ V+ V V+ + G +G +I L L+ + Y L P
Sbjct: 88 VFDESPQGKVLQVIVWGDY-----GRMDHKCFMGVAQILLEELDLSSMVIGWYKL--FPP 140
Query: 478 SGVRKMGEVQLAVRFTCSSL 497
S + L R + SSL
Sbjct: 141 SSLVDPTLAPLTRRASQSSL 160
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 5e-12
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 38 QMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFS-KD 96
+ +L V +A+ L G T + D Y++V G + T +NP W F
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 97 RIQASVLEVLVKDKDVVL-DDLIGRVMFDL 125
L V V D D DDL+G
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRSP 480
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 3e-11
Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMF-V 257
L ++ V+ A+ L D + + ++K G Q RT + NP W + + F
Sbjct: 391 RGLAHLVVSNFRAEHL-WGDYTTATDAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMDFEN 448
Query: 258 AAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEK 310
PL + V D D++LG C + + L
Sbjct: 449 VLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSG--------FHEVTCELNH 493
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 4e-04
Identities = 26/167 (15%), Positives = 49/167 (29%), Gaps = 12/167 (7%)
Query: 302 NTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPS 361
N + L + + + + R H + S + +
Sbjct: 333 NPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRG 392
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEV 421
+ L + A L T TDAY +G + RT + ++ PRW ++ +E
Sbjct: 393 LAHLVVSNFRAEHLWGDYTTA----TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN 448
Query: 422 FD--PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVY 466
+ V V+D G D +G + +
Sbjct: 449 VLLSTGGPLRVQVWD------ADYGWDDDLLGSCDRSPHSGFHEVTC 489
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 2e-10
Identities = 107/717 (14%), Positives = 200/717 (27%), Gaps = 224/717 (31%)
Query: 95 KDRIQASVLEVLVKDKDV--VLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK 152
KD + + V + D V D + + E+ I RL K
Sbjct: 19 KDILSV-FEDAFVDNFDCKDVQDMP--KSILSKEEI-DHIIMSKDAVSGTLRLFWTLLSK 74
Query: 153 VKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQ 212
E M+ ++ + + I+ P + + IE +
Sbjct: 75 ---QEEMVQKFVEEVLRINYK--FLMSP----------IK-TEQRQPSM--MTRMYIEQR 116
Query: 213 DLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVED 272
D L +D F + V +R+ P + + L+ E
Sbjct: 117 DRLYNDNQVFAKYNV----------SRLQPYLKLR----QALL---------------EL 147
Query: 273 RVAPNKDEVL------GK-CLIPLQAVQ--RRLDHKPVNTRWFNLEKHVIVDGEKKETKF 323
R P K+ ++ GK + L + W NL +
Sbjct: 148 R--PAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNL-------KNCNSPET 197
Query: 324 SSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDG 383
+ ++ + +D + SD K L + + A +K+K
Sbjct: 198 VLEMLQKLL-----YQIDPNWTSRSDHSSNIK---------LRIHSIQAELRRLLKSKP- 242
Query: 384 RGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-C-TVIT---VGVFDNGHI 438
Y ++ + N + W F+ C ++T V D
Sbjct: 243 ------YE---------NCLLVLLNV---QNAK-AWNAFNLSCKILLTTRFKQVTD---- 279
Query: 439 HGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSLI 498
+S T L L+
Sbjct: 280 ---------FLSAATTTHISLDHHSMTLTPDEVK--------------SL--------LL 308
Query: 499 NMLHMYSQPLLPKMHYIHPL--SVI---------QLDSLRH----QAMQIVSIRLNRAEP 543
L Q L ++ +P S+I D+ +H + I+ LN EP
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 544 PLRKEVVEYML----DVD------SHMWSMRRSKANFFRIMGVLSSLIS---VGKWFDQI 590
+++ + + S +W +M V++ L V K +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWF----DVIKSDVMVVVNKLHKYSLVEKQPKE- 423
Query: 591 CNWKNPLTTILIHILFIILVLYPELILPTVFLYLFLIGIWN----FRWRPRHPPHMD--- 643
+TI I +++ L + E L+ ++ +N F PP++D
Sbjct: 424 -------STISIPSIYLELKVKLENEYA---LHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 644 -TRLS-HAEAAHPDELDEEFDT------FPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLA 695
+ + H + E F F K +R+D S A I +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK------IRHD---STAWNASGSILNTL 524
Query: 696 TQGERFQSLISWRDPRATTL---FVTFCLIAAIVLYVTPF----QVVALLA---GIY 742
Q + ++ I DP+ L + F L + + + +AL+A I+
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 51/349 (14%), Positives = 104/349 (29%), Gaps = 89/349 (25%)
Query: 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTK---HFE 80
+ + ++E +Q L ++ + T D +KL + + +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQID-------PNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 81 KKSNPE--------WN-QCF-AFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPK 130
K N + + AF+ + +L + + K V D L ++
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFN---LSCKIL-LTTRFKQVT-DFLSAATTTHISLDHH 294
Query: 131 RIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVAN 190
+ L + +L ++ + + P + T + ++
Sbjct: 295 SMT-----------LTPDEVKS------LLLKYLDCRPQD-LP----REVLTTNPRRLSI 332
Query: 191 IRSKVYLSPKLW--YVRVN------IIEA--QDLLPSD-KSRFPE--VFVKAILGNQASR 237
I + W + VN IIE+ L P++ + F VF +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-------- 384
Query: 238 TRISPSKTINPMWNEDLMFVAAEPFEEPLILT-VEDRVAPNKDEVLGKCLIPLQAVQRRL 296
I P+ ++ +W + + +++ + K IP ++ L
Sbjct: 385 AHI-PTILLSLIWFDV------IKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYLEL 435
Query: 297 DHKPVNTRWFNLEKH-VIVDGEKKETKFSSRIHLRICLDG------GYH 338
K N H IVD F S + LD G+H
Sbjct: 436 KVKLENEY----ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 101/770 (13%), Positives = 194/770 (25%), Gaps = 308/770 (40%)
Query: 3 KSPQAID-----FALKETSPKIGAGSITGDKLSCTYD-LVEQMQYLYVRVVKAKDLPGKD 56
S A+ F + + + L Y L+ ++
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR------------ 103
Query: 57 VTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD---RIQA-----SVLEVLVK 108
P T+ + ++ + +N F+K R+Q L L
Sbjct: 104 -----QP---------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 109 DKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAP---QWYRLEDRKGDKVKTGELMLAVWMG 165
K+V++D ++G K + +A Y+++ + K+ W+
Sbjct: 150 AKNVLIDGVLG--------SGK-----TWVALDVCLSYKVQCKMDFKI--------FWL- 187
Query: 166 TQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEV 225
+ N S + + Q LL +
Sbjct: 188 ---------------------NLKNCNSPETV----------LEMLQKLLYQIDPNW--- 213
Query: 226 FVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNK--DEVLG 283
S + I+ + E + ++P+E L+ V V K +
Sbjct: 214 -------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNL 264
Query: 284 KCLIPLQAVQRRLDHKPVNTRWFNL--------EKHVIVDG-----EKKETK--FSSRIH 328
C + L + TR+ + H+ +D E K +
Sbjct: 265 SC--------KIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 329 LRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTD 388
R DL L +++ +DG T D
Sbjct: 313 CRP----------------QDLPREVLT-----TNPRRLSIIAE------SIRDGLATWD 345
Query: 389 AYCVAKYGQKWVRTRTI---VDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGG 445
+ K+ T I ++ P E ++FD VF
Sbjct: 346 NW---KHVNCDKLTTIIESSLNVLEP--AEYR--KMFDRL-----SVFP----------- 382
Query: 446 KDSRI-GKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSLINMLHMY 504
+ I + LS + D + + +V + ++N LH Y
Sbjct: 383 PSAHIPTIL---LSLIWFDVIKS-----------------DVMV--------VVNKLHKY 414
Query: 505 SQPLLPK-----MHYIHPLSVIQLDSLRHQAMQIVSIRLNRAEPPLRKEVVE-YMLDVDS 558
S L+ K I + L+ E L + +V+ Y +
Sbjct: 415 S--LVEKQPKESTISIPSI---YLELKVK----------LENEYALHRSIVDHYNIPKTF 459
Query: 559 HMWSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPLTTILIHILFIILVLYPELILP 618
L ++ I + H+ I L
Sbjct: 460 DSDD--------------LIPPYLDQYFYSHIGH----------HLKNIEHPERMTL-FR 494
Query: 619 TVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAA-------------------------- 652
VFL +FR+ ++ ++ H A
Sbjct: 495 MVFL--------DFRF-------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 653 HPDELDEEFDTFPTTKGSDIVRMRYDRLRSIA--GRVQTVIGDLATQGER 700
+ L F +++ +Y L IA + + + Q +R
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQAS 101
L V V++A +L G +PY E+ +G+ TT+ + NP+WN F +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 102 VLEVLVKDKDV-VLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELML 160
VL + + D+D DD +GR + ++ P+ + E V TGE+ +
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE------VPTGEVWV 502
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 190 NIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPM 249
+++ + + + V++IEA +L + + + +G+Q+ TR + T+NP
Sbjct: 375 AYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTR-TIQDTLNPK 433
Query: 250 WNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
WN + F + +++ L LT+ DR + D+ LG+ IP+ ++ + K TR L
Sbjct: 434 WNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLL- 492
Query: 310 KHVIVDGE 317
H + GE
Sbjct: 493 -HEVPTGE 499
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNP-EWNQCFAFSKDR--I 98
L V + +L G+ D +V ++ E + ++++ F +
Sbjct: 23 LIVHLKTVSELRGRA-----DRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77
Query: 99 QASVLEVLVKDKDVVL-DDLIGRVMFDLNEV 128
+ VLE+ + + V + LIG L +V
Sbjct: 78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 53.5 bits (127), Expect = 2e-07
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 13/118 (11%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL-GNYKGTTKHFEK---KSNPEWNQCFAFSKDR 97
L + +++A++LP K Y E+ L T + W + F F+
Sbjct: 13 LKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 98 IQASVLEVLVKDKDVV----LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151
++ L +D D +G V + + R + G
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGG 125
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 5e-06
Identities = 25/172 (14%), Positives = 49/172 (28%), Gaps = 18/172 (10%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYC-VAKYGQKWVRTRTIVDSFG---PRWNEQYTWE 420
L+L ++ A L P K YC + + RT + S W E + +
Sbjct: 13 LKLWIIEARELPPKK--------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFN 64
Query: 421 VFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGV 480
+ + ++ + K +G V + ++TL YP+ + SG
Sbjct: 65 NLPAVRALRLHLYR--DSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSG- 121
Query: 481 RKMGEVQLAVRFTCSSLINMLHMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQ 532
G + S ++ L ++
Sbjct: 122 ---GSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFA 170
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 42.7 bits (99), Expect = 4e-04
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 11/114 (9%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAIL-GNQASRTRISPS--KTINPMWNEDLMFVAAE 260
+++ IIEA++L P + + + L +RT P W E F
Sbjct: 13 LKLWIIEARELPPKKR-----YYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 261 PFEEPLILTVED---RVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311
+ D + +K +G +P+ + R +
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSG 121
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-07
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 41 YLYVRVVKAKDLPGKDVTG-SCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAFS 94
+L + + + G + +PY V + + P W+ F
Sbjct: 11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAH 70
Query: 95 KDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146
++ V++++VK K+ DLI +L + +R ++ W L+
Sbjct: 71 INK--GRVMQIIVKGKN---VDLISETTVELYSLAERCRKNNGKTEIWLELK 117
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A Length = 126 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 8e-04
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAFSK 95
+L + + + + P+ VK+ T + PEW F
Sbjct: 7 FLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHI 66
Query: 96 DRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146
V+++++ ++ + V ++ + +R ++ A W L+
Sbjct: 67 YE--GRVIQIVLMRAA---EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ 112
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 772 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.98 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.82 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.81 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.81 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.81 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.81 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.8 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.8 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.79 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.79 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.78 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.78 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.78 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.77 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.77 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.77 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.76 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.76 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.76 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.75 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.75 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.75 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.75 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.74 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.74 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.74 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.73 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.73 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.73 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.73 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.73 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.73 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.72 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.72 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.72 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.72 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.72 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.71 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.71 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.71 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.71 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.71 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.71 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.71 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.7 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.7 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.7 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.7 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.7 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.7 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.7 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.7 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.7 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.69 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.69 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.69 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.68 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.68 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.68 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.67 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.67 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.67 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.66 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.65 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.63 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.61 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.6 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.59 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.57 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.56 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.55 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.55 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.54 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.54 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.5 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.47 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.45 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.42 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.39 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.24 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.17 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.16 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.13 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.13 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.11 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.03 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.01 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.89 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.85 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.78 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.66 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.6 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 93.11 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 86.61 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 85.42 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 85.11 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 85.0 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 82.92 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 80.21 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=286.61 Aligned_cols=247 Identities=26% Similarity=0.383 Sum_probs=205.1
Q ss_pred cccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 23 SITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
..|.+.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++++ ++.+|++++++.||+|||+|.|.+..
T Consensus 4 ~~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~ 81 (284)
T 2r83_A 4 KLGKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 81 (284)
T ss_dssp CCCEEEEEEEEET--TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred ceeEEEEEEEEEC--CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHH
Confidence 3577889988885 4569999999999999999889999999999974 47899999999999999999999853
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--ceeeeEEEEEEEeeecCCCcCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD--KVKTGELMLAVWMGTQADEAFPD 174 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~~~~d~~~~~ 174 (772)
.....|.|+|||.+.+ +|++||++.++|.++..+. ....|++|....+. ... |+|.+++.+.+
T Consensus 82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~-G~i~l~l~~~p-------- 147 (284)
T 2r83_A 82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAEKEEQEKL-GDICFSLRYVP-------- 147 (284)
T ss_dssp CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS-----CEEEEEECBCCSSCCCCCC-CEEEEEEEEET--------
T ss_pred hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCC-----cceeEEEeecccccccccc-ccEEEEEEecC--------
Confidence 3468999999999998 8999999999999997652 35789999876432 234 99998886642
Q ss_pred cCCCCCccCCCCCccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEEC--C---eeeeeccccCCCCCCc
Q 004127 175 AWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILG--N---QASRTRISPSKTINPM 249 (772)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~ 249 (772)
..+.|.|.|++|++|+.++..+.+||||++++. + .+++|+++++ +.||.
T Consensus 148 -------------------------~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~ 201 (284)
T 2r83_A 148 -------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPY 201 (284)
T ss_dssp -------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCE
T ss_pred -------------------------cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCE
Confidence 234799999999999999998999999999985 2 4678999887 99999
Q ss_pred eeceeEEEeeCCC--CCcEEEEEEEccCCCCCceeEEEEEeccccccc--------cCCCCCCceeEEcccC
Q 004127 250 WNEDLMFVAAEPF--EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRR--------LDHKPVNTRWFNLEKH 311 (772)
Q Consensus 250 wne~f~f~~~~~~--~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~--------~~~~~~~~~w~~L~~~ 311 (772)
|||.|.|.+.... ...|.|+|||++..+++++||++.+++..+... ...+....+|++|...
T Consensus 202 wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 202 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred EceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 9999999986543 346999999999999999999999999864321 1233456799999875
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=281.99 Aligned_cols=231 Identities=25% Similarity=0.342 Sum_probs=191.3
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCccEEEEEECC---eeeeeccccCCCCCCceeceeEEEeeCC--CCCcEEEEEEEccC
Q 004127 201 LWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN---QASRTRISPSKTINPMWNEDLMFVAAEP--FEEPLILTVEDRVA 275 (772)
Q Consensus 201 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d~ 275 (772)
.+.|.|+|++|++|+.++..+.+||||++.+++ +.++|+++++ +.||.|||+|.|.+... ....|.|+|||++.
T Consensus 18 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~ 96 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR 96 (284)
T ss_dssp TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence 357999999999999999999999999999963 5788999987 99999999999998643 35689999999999
Q ss_pred CCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCcccc
Q 004127 276 PNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAK 355 (772)
Q Consensus 276 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~ 355 (772)
.+++++||++.++|.++.. ......|++|..... ......|++.+.+...
T Consensus 97 ~~~~~~lG~~~i~l~~l~~----~~~~~~w~~L~~~~~-----~~~~~~G~i~l~l~~~--------------------- 146 (284)
T 2r83_A 97 FSKHDIIGEFKVPMNTVDF----GHVTEEWRDLQSAEK-----EEQEKLGDICFSLRYV--------------------- 146 (284)
T ss_dssp SSCCCEEEEEEEEGGGCCC----SSCEEEEEECBCCSS-----CCCCCCCEEEEEEEEE---------------------
T ss_pred CCCCceeEEEEEcchhccc----CCcceeEEEeecccc-----ccccccccEEEEEEec---------------------
Confidence 8899999999999999863 234678999987521 1123468887776532
Q ss_pred ccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeecccCCCCCeecceEEEEeeCC---CcE
Q 004127 356 QLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTV 427 (772)
Q Consensus 356 ~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~ 427 (772)
+..+.|.|.|++|+||+.+ |..|.+||||++.+. + ..+||+++++|+||+|||.|.|.+..+ ...
T Consensus 147 ----p~~~~l~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 219 (284)
T 2r83_A 147 ----PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQ 219 (284)
T ss_dssp ----TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEE
T ss_pred ----CcCCceEEEEEEeECCCCc---CCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceE
Confidence 2347999999999999987 667899999999983 3 357999999999999999999998754 357
Q ss_pred EEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc------------ccCceEeeeEeeeec
Q 004127 428 ITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL------------ETDRVYTHSYPLLVL 475 (772)
Q Consensus 428 l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l------------~~~~~~~~~~~L~~~ 475 (772)
|.|+|||++.++ ++++||.+.|++..+ ..+....+||+|...
T Consensus 220 l~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 220 VVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEEEEECCSSS------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred EEEEEEeCCCCC------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 999999999875 899999999999874 235677899998753
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-32 Score=284.46 Aligned_cols=248 Identities=31% Similarity=0.424 Sum_probs=200.0
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeeeecCCCCCeeccEEEEEecc--C
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSNPEWNQCFAFSKDR--I 98 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~---~~~~~kT~~~~~t~nP~Wne~f~f~v~~--~ 98 (772)
.|.+.+++.|+.. .+.|.|+|++|+||+..|..|.+||||++++ +.++++|+++++|.||+|||+|.|.+.. .
T Consensus 6 ~G~l~~~l~y~~~--~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 83 (296)
T 1dqv_A 6 CGRISFALRYLYG--SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83 (296)
T ss_dssp SCEEEEEEECCSS--SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred eeEEEEEEEEeCC--CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHh
Confidence 5778888888754 5699999999999999999999999999999 4478899999999999999999999853 3
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEE-ccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcCCCcC
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFD-LNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAW 176 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~ 176 (772)
....|.|+|||++.+ +|++||++.++ +.++.... .....|++|....+.....|+|.+.+.+.+
T Consensus 84 ~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~----~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~---------- 149 (296)
T 1dqv_A 84 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP----PDRPLWRDILEGGSEKADLGELNFSLCYLP---------- 149 (296)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSC----SSCCCCEECBCCSSCCSCCCEEEEEEEEET----------
T ss_pred cCCEEEEEEEEcCCCCCCceEEEEEeccccccccCC----ccceeeeccccccccccccceEEEEEEecc----------
Confidence 356899999999998 89999999996 54544321 224679999875433222399999887642
Q ss_pred CCCCccCCCCCccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEEC--C---eeeeeccccCCCCCCcee
Q 004127 177 HSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILG--N---QASRTRISPSKTINPMWN 251 (772)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wn 251 (772)
..+.|.|.|++|++|+.++..|.+||||++++. + .+++|+++++ +.||.||
T Consensus 150 -----------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wn 205 (296)
T 1dqv_A 150 -----------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYN 205 (296)
T ss_dssp -----------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEE
T ss_pred -----------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeEC
Confidence 235799999999999999999999999999996 2 5788999987 9999999
Q ss_pred ceeEEEeeCCC--CCcEEEEEEEccCCCCCceeEEEEEecccccccc---------CCCCCCceeEEcccC
Q 004127 252 EDLMFVAAEPF--EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRL---------DHKPVNTRWFNLEKH 311 (772)
Q Consensus 252 e~f~f~~~~~~--~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~---------~~~~~~~~w~~L~~~ 311 (772)
|.|.|.+.... ...|.|+|||++..+++++||++.+++.++.... ..+....+|+.|...
T Consensus 206 e~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 206 EALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp ECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred ceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 99999886543 3479999999999999999999999998764300 023345677777654
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=280.15 Aligned_cols=230 Identities=22% Similarity=0.359 Sum_probs=186.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCccEEEEEE---CCeeeeeccccCCCCCCceeceeEEEeeCCC--CCcEEEEEEEccC
Q 004127 201 LWYVRVNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVAAEPF--EEPLILTVEDRVA 275 (772)
Q Consensus 201 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l---~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~--~~~l~i~V~d~d~ 275 (772)
.+.|.|+|++|++|+.++..+.+||||++++ +++.++|+++++ +.||.|||+|.|.+.... ...|.|+|||+|.
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence 4579999999999999999999999999999 467899999987 999999999999985432 4589999999999
Q ss_pred CCCCceeEEEEEe-ccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCccc
Q 004127 276 PNKDEVLGKCLIP-LQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTA 354 (772)
Q Consensus 276 ~~~d~~iG~~~i~-l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~ 354 (772)
++++++||++.++ +.++.. .......|+.|.... ......|+|.+.++..
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~---~~~~~~~w~~L~~~~------~~~~~~G~i~vsl~y~-------------------- 148 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAE---QPPDRPLWRDILEGG------SEKADLGELNFSLCYL-------------------- 148 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGS---SCSSCCCCEECBCCS------SCCSCCCEEEEEEEEE--------------------
T ss_pred CCCCceEEEEEecccccccc---CCccceeeecccccc------ccccccceEEEEEEec--------------------
Confidence 9999999999995 544432 123356899997641 1123468888876642
Q ss_pred cccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeecccCCCCCeecceEEEEeeCC---Cc
Q 004127 355 KQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIVDSFGPRWNEQYTWEVFDP---CT 426 (772)
Q Consensus 355 ~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~ 426 (772)
+..|.|.|.|++|+||+.+ |..|.+||||++.++ + .++||+++++++||+|||.|.|.+... ..
T Consensus 149 -----~~~~~l~v~v~~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~ 220 (296)
T 1dqv_A 149 -----PTAGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENV 220 (296)
T ss_dssp -----TTTTEEEEEEEEEESCCCC---SSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSC
T ss_pred -----cccceeEEEEEEeecCCcc---CCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCc
Confidence 2348999999999999988 667899999999995 3 468999999999999999999998754 35
Q ss_pred EEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc-------------CceEeeeEeeee
Q 004127 427 VITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET-------------DRVYTHSYPLLV 474 (772)
Q Consensus 427 ~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~-------------~~~~~~~~~L~~ 474 (772)
.|.|+|||++.++ ++++||.+.|++..+.. ++...+|++|..
T Consensus 221 ~L~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~ 275 (296)
T 1dqv_A 221 GLSIAVVDYDCIG------HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275 (296)
T ss_dssp CCCCEEEECCSSS------CCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred EEEEEEEeCCCCC------CCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence 7999999999875 89999999999997632 445556666654
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=171.82 Aligned_cols=124 Identities=27% Similarity=0.459 Sum_probs=110.5
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcC
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHI 438 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~ 438 (772)
....|.|.|+|++|+||+.+ +..|.+||||++.++++.+||+++++++||.|||+|.|.+.++...|.|+|||++.+
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred cCCceEEEEEEEeeECCCCC---CCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 45669999999999999987 667899999999999999999999999999999999999998888999999999986
Q ss_pred CCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+ +|++||.+.+++.++..+. .+||+|.....++ +..|+|+++++|.+
T Consensus 86 ~------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp E------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred C------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 5 8999999999999998776 6899998764433 35699999999854
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=166.02 Aligned_cols=123 Identities=21% Similarity=0.315 Sum_probs=107.5
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEEEeCC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGVFDNG 436 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v~D~~ 436 (772)
..|.|.|+|++|+||+.+ +. |.+||||+++++++.+||+++++++||+|||.|.|.+.. ....|.|+|||++
T Consensus 5 ~~g~L~v~v~~a~~L~~~---~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d 80 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKT---KF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE 80 (140)
T ss_dssp BCCEEEEEEEEEESCCCC---SS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred CCcEEEEEEEEeeCCCCC---CC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence 348999999999999987 66 899999999999999999999999999999999999975 3688999999999
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCceEeeeEe---eeecCCCCcccccEEEEEEEEeec
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYP---LLVLHPSGVRKMGEVQLAVRFTCS 495 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~---L~~~~~~g~~~~G~i~l~~~f~~~ 495 (772)
.++ +|++||.+.|++.++..+.....|++ |.+. .+....|+|+++++|.|.
T Consensus 81 ~~~------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~--~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 81 TIG------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNE--KGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp CSS------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT--TCCEEEEEEEEEEEECCC
T ss_pred CCC------CCceEEEEEEEHHHhccCCCceeEEeeeeccCC--CCCCCCCEEEEEEEEECC
Confidence 875 88999999999999988888889998 4432 333456999999999764
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=167.08 Aligned_cols=123 Identities=23% Similarity=0.340 Sum_probs=109.1
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeccc-CCCCCeecceEEEEeeCCCcEEEEEEEeCCcC
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIV-DSFGPRWNEQYTWEVFDPCTVITVGVFDNGHI 438 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~ 438 (772)
.+.|.|.|+|++|+||+.. +..|.+||||+++++++.+||++++ ++.||+|||+|.|.+.+....|.|+|||++.+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEeccCCCCc---ccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence 3458999999999999987 6668999999999999999999998 89999999999999998888999999999986
Q ss_pred CCCCCCCCCcccEEEEEecCcc-ccCceEeeeEeeeecCCCCcccccEEEEEEEEeec
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTL-ETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCS 495 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 495 (772)
+ +|++||.+.|++.++ ..+.....||+|.. +.+..|+|+++++|.|.
T Consensus 84 ~------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~----~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 T------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp T------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred C------CCceEEEEEEEHHHhccCCCCCcEEEEeec----CCccCEEEEEEEEEEeC
Confidence 5 899999999999999 55666789999982 23456999999999875
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=166.13 Aligned_cols=124 Identities=34% Similarity=0.509 Sum_probs=109.7
Q ss_pred ecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC
Q 004127 33 YDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV 112 (772)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~ 112 (772)
....+..+.|.|+|++|+||++.+..|.+||||++++++++.+|++++++.||.|||+|.|.+.+. ...|.|+|||++.
T Consensus 6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~ 84 (133)
T 2ep6_A 6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDG 84 (133)
T ss_dssp CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEET
T ss_pred ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCC
Confidence 455678899999999999999999889999999999999999999999999999999999999864 5789999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEee
Q 004127 113 V-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWMG 165 (772)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~ 165 (772)
. +|++||++.++|.++..+ ..+|++|....+. ... |+|.+++.+.
T Consensus 85 ~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~-G~i~l~i~~~ 131 (133)
T 2ep6_A 85 DKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFK-GVIYLEMDLI 131 (133)
T ss_dssp TEEEEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCS-SEEEEEEEEE
T ss_pred CCCCCeeEEEEEEHHHccCC-------CceEEEeecCCCCCccc-eEEEEEEEEE
Confidence 8 899999999999999643 3589999877543 344 9999999774
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-19 Score=163.68 Aligned_cols=124 Identities=27% Similarity=0.400 Sum_probs=108.5
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC---CCceEEEEEEecCCC
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI---QASVLEVLVKDKDVV 113 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~~L~i~V~d~~~~ 113 (772)
...|.|.|+|++|+||+..+. +.+||||++++++++++|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~ 82 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI 82 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence 345799999999999999998 9999999999999999999999999999999999998643 468999999999998
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEE---eecCCCCceeeeEEEEEEEeeec
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYR---LEDRKGDKVKTGELMLAVWMGTQ 167 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~---L~~~~~~~~~~G~l~l~~~~~~~ 167 (772)
+|++||++.++|.++..+. ....|++ |.+..+.... |+|.+++.|.+.
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~~~-G~l~l~~~~~p~ 134 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQDTG-ATIDLVIGYDPP 134 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCEEE-EEEEEEEEECCC
T ss_pred CCCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCCCC-CEEEEEEEEECC
Confidence 8999999999999997653 2468988 7776666666 999999998754
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=164.92 Aligned_cols=126 Identities=24% Similarity=0.374 Sum_probs=105.8
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCC--
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIH-- 439 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~-- 439 (772)
.|.|.|+|++|+||+.+ |..|.+||||++.+++..+||+++++|+||.|||.|.|.+.++.+.|.|+|||++...
T Consensus 16 ~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAK---DKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCC---CCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence 48999999999999987 6678999999999999999999999999999999999999988899999999999740
Q ss_pred ---CCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 440 ---GQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 440 ---~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
...+.++|++||.+.|++.++. ....+||+|......+ +..|+|+|++.|.
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 0000128999999999999994 3458999998643322 3569999999885
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=167.49 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=101.7
Q ss_pred CCccEEEEEEEEecCCCCCccCC-------CCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~-------~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~ 431 (772)
...|.|+|+|++|+||++++... ..|.+||||+|.++++. .||+++++|+||+|||+|.|.+.+ ...|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence 45699999999999999874210 13679999999998876 699999999999999999999875 4689999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccC----ceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD----RVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
|||+|.++ +|++||.+.|++.++..+ .....||+|.. .|+|+++++|.
T Consensus 105 V~D~d~~~------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETPLG------YDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITLT 156 (157)
T ss_dssp EEECCSSS------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEEC
T ss_pred EEECCCCC------CCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEEE
Confidence 99999875 899999999999999754 77899999953 49999999874
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=166.96 Aligned_cols=126 Identities=25% Similarity=0.393 Sum_probs=101.5
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC------EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEE
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGV 432 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v 432 (772)
....+.|.|+|++|+||+.+ +..|.+||||++++++ ..+||+++++|+||+|||+|.|.+......|.|+|
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V 92 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV 92 (153)
T ss_dssp CTTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCC---CCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence 34558999999999999987 6668999999999963 57899999999999999999999988888999999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCce------EeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRV------YTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
||++.++ +|++||.+.|++.++..+.. ..+||+|......+ +..|+|++++.|.|
T Consensus 93 ~d~d~~~------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 93 FDENRLT------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp EECCSSS------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred EECCCCc------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEeC
Confidence 9999875 89999999999999976542 25899997654322 45699999999854
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=163.09 Aligned_cols=125 Identities=27% Similarity=0.406 Sum_probs=108.5
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeec-CCCCCeeccEEEEEeccCCCceEEEEEEecCCC-
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFE-KKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV- 113 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~- 113 (772)
....+.|+|+|++|+||+..+..+.+||||++++++++.+|++++ ++.||+|||+|.|.+.+ ....|.|+|||++.+
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~ 84 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGT 84 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCT
T ss_pred CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCC
Confidence 356789999999999999999889999999999999999999998 89999999999999987 568999999999988
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecC
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (772)
+|++||++.++|.++.... .....||+|. . +.... |+|.+++.|.+..
T Consensus 85 ~d~~lG~~~i~l~~l~~~~----~~~~~w~~L~-~-~~~~~-G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 85 EDDAVGEATIPLEPVFVEG----SIPPTAYNVV-K-DEEYK-GEIWVALSFKPSG 132 (136)
T ss_dssp TTCCSEEEEEESHHHHHHS----EEEEEEEEEE-E-TTEEE-EEEEEEEEEEECC
T ss_pred CCceEEEEEEEHHHhccCC----CCCcEEEEee-c-CCccC-EEEEEEEEEEeCC
Confidence 8999999999999995331 2356899998 3 33455 9999999997653
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-19 Score=164.81 Aligned_cols=119 Identities=22% Similarity=0.369 Sum_probs=100.8
Q ss_pred cCceeEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCee-eeeeeecCCCCCeeccEEEEEeccCCCceEE
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDV----------TGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQASVLE 104 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~----------~~~~dpyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~ 104 (772)
....|.|+|+|++|+||++.|. .|.+||||++.+++++ .||+++++|.||+|||+|.|.+.+ ...|.
T Consensus 25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~ 102 (157)
T 2fk9_A 25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLE 102 (157)
T ss_dssp CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEEE
Confidence 4567899999999999998873 3679999999999865 799999999999999999999975 46899
Q ss_pred EEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 105 VLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 105 i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|+|||.+.+ +|++||.+.|+|.++..+.+ +......||+|++. |+|.+.+.+
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~-~~~~~~~W~~L~~~-------G~i~l~l~~ 155 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTG-ASDTFEGWVDLEPE-------GKVFVVITL 155 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHT-TCSEEEEEEECBSS-------CEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhcccC-CCCcccEEEECCCC-------cEEEEEEEE
Confidence 999999998 89999999999999875411 12346799999752 999998876
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=166.95 Aligned_cols=126 Identities=25% Similarity=0.404 Sum_probs=100.9
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC------EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVF 433 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~ 433 (772)
...|.|.|+|++|+||+.+ +..|.+||||+|.+++ ..+||+++++++||.|||.|.|.+......|.|+||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~ 81 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVF 81 (176)
T ss_dssp TTCEEEEEEEEEEESCC------CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCc---CCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEE
Confidence 3458999999999999987 6678999999999965 678999999999999999999999977789999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceE-e-----eeEeeeecCCCCcccccEEEEEEEEeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVY-T-----HSYPLLVLHPSGVRKMGEVQLAVRFTCS 495 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 495 (772)
|++.++ +|++||.+.|+|.++..+... . .||+|.....++ +..|+|+|+++|.|.
T Consensus 82 d~d~~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 82 DENRLT------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLPK 142 (176)
T ss_dssp ECC----------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC-
T ss_pred ECCCCC------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEeC
Confidence 999875 899999999999999765432 2 799998654333 346999999999775
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=161.57 Aligned_cols=128 Identities=31% Similarity=0.418 Sum_probs=101.8
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEe
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKD 109 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d 109 (772)
....+.|+|+|++|+||+..+..|.+||||++++++ .+++|++++++.||+|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 456689999999999999999889999999999984 578999999999999999999999764 5789999999
Q ss_pred cCCC-CCceeEEEEEEccccCCCCCCC-CCCCCeEEEeecCCCC-ceeeeEEEEEEEee
Q 004127 110 KDVV-LDDLIGRVMFDLNEVPKRIPPD-SPLAPQWYRLEDRKGD-KVKTGELMLAVWMG 165 (772)
Q Consensus 110 ~~~~-~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~ 165 (772)
++.. +|++||++.++|.++....... .....+||+|....+. ... |+|.++++|.
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~-G~i~l~l~~~ 152 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVK-GYLRLKMTYL 152 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCC-SEEEEEEEEC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcc-eEEEEEEEEe
Confidence 9998 8999999999999997664321 2334699999876432 345 9999999874
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=159.86 Aligned_cols=119 Identities=31% Similarity=0.527 Sum_probs=104.5
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC----
Q 004127 38 QMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV---- 113 (772)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~---- 113 (772)
..+.|.|+|++|+||++.+..|.+||||++++++++.+|+++++|.||.|||+|.|.+... .+.|.|+|||++..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~~ 93 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSR 93 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHHH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 3689999999999999999899999999999999999999999999999999999999765 47899999999973
Q ss_pred --------CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-eeeeEEEEEEEee
Q 004127 114 --------LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK-VKTGELMLAVWMG 165 (772)
Q Consensus 114 --------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 165 (772)
+|++||++.++|.++... ..+||+|....+.. .. |+|.+++++.
T Consensus 94 ~~~~~~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~-G~i~l~l~~e 146 (148)
T 3kwu_A 94 VKQRFKRESDDFLGQTIIEVRTLSGE-------MDVWYNLDKRTDKSAVS-GAIRLHISVE 146 (148)
T ss_dssp HHTTTSSCSSEEEEEEEEEGGGCCSE-------EEEEEECBCSSTTCCCC-CEEEEEEEEE
T ss_pred ccccccCCCCccEEEEEEEHHHCcCC-------CCEEEEcccCCCCCCCc-eEEEEEEEEE
Confidence 899999999999999322 46899999765432 44 9999999874
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=160.18 Aligned_cols=120 Identities=21% Similarity=0.299 Sum_probs=100.8
Q ss_pred ccEEEEEEEEecCCCCCccCCC--------CCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDG--------RGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~--------~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v 432 (772)
.|.|+|+|++|+||++++.... .+.+||||++.+++.. .+|+++++|+||+|||+|.|.+.+. ..|.|+|
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V 83 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence 3899999999999998742100 1239999999998876 6999999999999999999999876 8899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccC--ceEeeeEeeeecCCCCcccccEEEEEEEEeecc
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETD--RVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSS 496 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 496 (772)
||+|.++ +|++||.+.|++.++..+ .....|++|.. .|+|+++++|....
T Consensus 84 ~d~d~~~------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--------~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 84 FHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWIDLEP--------EGKVYVIIDLSGSS 135 (136)
T ss_dssp EECCSSS------SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--------SCEEEEEEEEEEEE
T ss_pred EeCCCCC------CCCEEEEEEEEHHHhcccCCCCccEEEEcCC--------CeEEEEEEEEEecC
Confidence 9999875 899999999999999763 45689998853 49999999997643
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=158.08 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=99.5
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC---EEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~ 438 (772)
|.|.|+|++|+||+.++..+..|.+||||++.+++ ..+||+++++++||+|||+|.|.+.. ....|.|+|||++.+
T Consensus 3 ~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~ 82 (126)
T 1rlw_A 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCC
Confidence 78999999999999853224568899999999985 67999999999999999999999964 467899999999874
Q ss_pred CCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+|++||.+.++|.++..+.....|++|.. ...|.|+++++.
T Consensus 83 -------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~ 123 (126)
T 1rlw_A 83 -------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp -------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred -------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEe
Confidence 68899999999999999998999999963 233666666654
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-18 Score=162.94 Aligned_cols=129 Identities=29% Similarity=0.419 Sum_probs=102.1
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEec
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDK 110 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~ 110 (772)
...|.|+|+|++|+||+..+..|.+||||++++++ .+++|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~ 83 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE 83 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence 45789999999999999999889999999999986 568999999999999999999999753 57899999999
Q ss_pred CCC-CCceeEEEEEEccccCCCCCC-CCCCCCeEEEeecCCCC-ceeeeEEEEEEEeeec
Q 004127 111 DVV-LDDLIGRVMFDLNEVPKRIPP-DSPLAPQWYRLEDRKGD-KVKTGELMLAVWMGTQ 167 (772)
Q Consensus 111 ~~~-~d~~lG~~~i~l~~l~~~~~~-~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~~ 167 (772)
+.+ +|++||++.++|.++...... +.....+||+|....+. +.. |+|.+++.|.+.
T Consensus 84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~-G~l~l~l~~~p~ 142 (176)
T 3m7f_B 84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVK-GYLRLKMTYLPK 142 (176)
T ss_dssp C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCC-SEEEEEEEECC-
T ss_pred CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccC-EEEEEEEEEEeC
Confidence 998 999999999999999866422 12234489999876533 345 999999999765
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=157.73 Aligned_cols=117 Identities=18% Similarity=0.330 Sum_probs=99.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCee-eeeeeecCCCCCeeccEEEEEeccCCCceEEE
Q 004127 38 QMQYLYVRVVKAKDLPGKDVTGS-----------CDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEV 105 (772)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~~~~~~-----------~dpyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i 105 (772)
..|.|+|+|++|+||++.|..+. +||||++.++++. .+|+++++|.||+|||+|.|.+.+. ..|.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEE
Confidence 35799999999999998875433 9999999998864 7999999999999999999999764 88999
Q ss_pred EEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 106 LVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 106 ~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
+|||++.+ +|++||++.+++.++..+.. .....|++|.+. |+|.+++.+..
T Consensus 82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~---~~~~~w~~L~~~-------G~i~l~l~~~~ 133 (136)
T 1gmi_A 82 AVFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEPE-------GKVYVIIDLSG 133 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBSS-------CEEEEEEEEEE
T ss_pred EEEeCCCCCCCCEEEEEEEEHHHhcccCC---CCccEEEEcCCC-------eEEEEEEEEEe
Confidence 99999988 89999999999999986531 224689999752 99999998864
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-18 Score=161.63 Aligned_cols=127 Identities=21% Similarity=0.199 Sum_probs=103.7
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CC
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LD 115 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d 115 (772)
...+.|.|+|++|++|++.+..+.+||||++++++++++|+++++|.||+|||+|.|.+.. ...|.|+|||++.+ +|
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~d 110 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSD 110 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCC
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCC
Confidence 3467899999999999944434559999999999999999999999999999999999864 78999999999998 99
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEeee
Q 004127 116 DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWMGT 166 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~ 166 (772)
++||++.++|.++.............|++|....+. ... |+|.+++.+..
T Consensus 111 d~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~-G~L~v~l~~l~ 161 (173)
T 2nq3_A 111 VLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI-GDLSICLDGLQ 161 (173)
T ss_dssp EEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEE-EEEEEEEESEE
T ss_pred ceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCccc-EEEEEEEeeee
Confidence 999999999999875432111223679999986433 345 99999998764
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=153.88 Aligned_cols=115 Identities=25% Similarity=0.417 Sum_probs=97.8
Q ss_pred eeEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC
Q 004127 39 MQYLYVRVVKAKDLPGK---DVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV 112 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~ 112 (772)
.+.|.|+|++|+||+.. +..|.+||||++++++ ++++|++++++.||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 46899999999999984 5568999999999996 68899999999999999999999966667899999999998
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEE
Q 004127 113 VLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVW 163 (772)
Q Consensus 113 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (772)
.+|++||++.++|.++..+. ....|++|.+. -. |+|.+++.
T Consensus 82 ~~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~----~~-g~i~~~le 122 (126)
T 1rlw_A 82 VMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV----TE-MVLEMSLE 122 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTC-----EEEEEEEETTT----EE-EEEEEEEE
T ss_pred CCCceeEEEEEEHHHccCCC-----cEEEEEEcCCC----ce-EEEEEEEE
Confidence 88999999999999997542 35689999763 12 66666653
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-18 Score=154.03 Aligned_cols=116 Identities=21% Similarity=0.338 Sum_probs=97.5
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeecCCCCCeeccEEEEE-ec--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAFS-KD-- 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~-v~-- 96 (772)
|+..+.++++.. .+.|.|+|++|+||+. +..|.+||||++++ ...+.||+++++|.||+|||+|.|. +.
T Consensus 7 ~~~~~~~~~~~~--~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~ 83 (134)
T 2b3r_A 7 GSGAVKLSVSYR--NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83 (134)
T ss_dssp CCCEEEEEEEEE--TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHH
T ss_pred ccEEEEEEEeec--CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHH
Confidence 344567777764 4699999999999997 66889999999999 3467899999999999999999999 64
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
++....|.|+|||++.+ +|++||++.++|.++..+. ...+||+|.+.
T Consensus 84 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~ 131 (134)
T 2b3r_A 84 TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK-----ETVKWYQLTAA 131 (134)
T ss_dssp HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTS-----CEEEEEECBC-
T ss_pred HhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCC-----CcceeEECCCc
Confidence 33568999999999998 8999999999999997642 35799999875
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=161.94 Aligned_cols=117 Identities=18% Similarity=0.238 Sum_probs=100.7
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---e---eeeeeeecCCCCCeeccEEEEEecc
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---Y---KGTTKHFEKKSNPEWNQCFAFSKDR 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~---~~kT~~~~~t~nP~Wne~f~f~v~~ 97 (772)
.|.+.+++.|+. ..+.|.|+|++|+||+++|..|.+||||++++.+ . ++||+++++|.||+|||+|.|.+..
T Consensus 29 ~G~l~~sl~y~~--~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~ 106 (155)
T 2z0u_A 29 ATRIQIALKYDE--KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106 (155)
T ss_dssp CEEEEEEEEEET--TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred cEEEEEEEEEcC--CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence 577888888875 4569999999999999999999999999999975 2 7899999999999999999999853
Q ss_pred --CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 98 --IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 98 --~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+....|.|+|||++.. ++++||++.++|.++... .....+||+|.
T Consensus 107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~----~~~~~~W~~L~ 154 (155)
T 2z0u_A 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS----GERSTRWYNLL 154 (155)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTT----CCCEEEEEEEB
T ss_pred HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCC----CCccccceEcc
Confidence 2357899999999998 999999999999999532 13367999986
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-18 Score=154.03 Aligned_cols=115 Identities=28% Similarity=0.521 Sum_probs=95.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
.|.+.+++.|+.. .+.|.|+|++|+||++.+..|.+||||++++ +..+.+|+++++|.||+|||+|.|.+.
T Consensus 4 ~G~l~~~l~y~~~--~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 81 (129)
T 2bwq_A 4 SGQLSIKLWFDKV--GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 81 (129)
T ss_dssp CCEEEEEEEEETT--TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCG
T ss_pred eEEEEEEEEEccC--CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCH
Confidence 4667888888754 4699999999999999998899999999999 346889999999999999999999952
Q ss_pred -cCCCceEEEEEEecCCC-C--CceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 97 -RIQASVLEVLVKDKDVV-L--DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 97 -~~~~~~L~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+.....|.|+|||++.. + +++||++.++|.++.... ..+||+|+
T Consensus 82 ~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~Lq 129 (129)
T 2bwq_A 82 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 129 (129)
T ss_dssp GGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred HHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc------CCccEECc
Confidence 33467999999999988 5 999999999999987542 57999984
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.7e-18 Score=157.34 Aligned_cols=104 Identities=24% Similarity=0.356 Sum_probs=93.5
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---CCEEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeC
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDN 435 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---~~~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~ 435 (772)
.+.|.|+|++|+||+.+ +..|.+||||++++ +...+||++++++.||+|||+|.|.+.. ....|.|+|||+
T Consensus 41 ~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 117 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF 117 (152)
T ss_dssp TTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCc---cCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEEC
Confidence 47999999999999987 66789999999999 4567899999999999999999998874 367899999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
+.++ +|++||.+.|++.++..+....+||+|.+
T Consensus 118 d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 118 DRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CSSS------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCC------CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 9875 89999999999999988888899999975
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=156.81 Aligned_cols=120 Identities=31% Similarity=0.436 Sum_probs=103.3
Q ss_pred CcccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 22 GSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
...|.+.+++.|+. ..+.|.|+|++|+||+..+..+.+||||++++. .++.+|++++++.||+|||+|.|.+..
T Consensus 26 ~~~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 103 (152)
T 1rsy_A 26 EKLGKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103 (152)
T ss_dssp CCCCEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred CCceEEEEEEEEeC--CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHH
Confidence 34677888888875 456999999999999999988999999999995 367899999999999999999999853
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+....|.|+|||++.+ +|++||++.++|.++..+. ...+||+|.+.
T Consensus 104 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~ 151 (152)
T 1rsy_A 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSA 151 (152)
T ss_dssp HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBCC
T ss_pred HcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCC-----CcceEEECCCC
Confidence 2468899999999998 8999999999999996542 35799999764
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=154.39 Aligned_cols=119 Identities=33% Similarity=0.499 Sum_probs=102.7
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEec---c
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKD---R 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~---~ 97 (772)
.|.+.+++.|.. ..+.|.|+|++|+||+..+..|.+||||++++.+ ++.+|++++++.||+|||+|.|.+. +
T Consensus 12 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 89 (141)
T 2d8k_A 12 LGRIQFSVGYNF--QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 89 (141)
T ss_dssp CCEEEEEEEECS--SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHH
T ss_pred eeEEEEEEEEeC--CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHH
Confidence 577788888774 5679999999999999999889999999999953 6789999999999999999999852 2
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
.....|.|+|||++.+ +|++||++.++|.++..+. ....||+|.+..
T Consensus 90 ~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 137 (141)
T 2d8k_A 90 VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ-----MQTFWKDLKPSG 137 (141)
T ss_dssp HTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTS-----CEEEEECCEECC
T ss_pred cccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC-----CccEEEECcCCC
Confidence 3467899999999998 8999999999999997653 357899998764
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=151.54 Aligned_cols=120 Identities=21% Similarity=0.332 Sum_probs=103.0
Q ss_pred cccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CE
Q 004127 322 KFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QK 398 (772)
Q Consensus 322 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~---~~ 398 (772)
...|+|++.+... +..+.|.|+|++|+||+.+ +..|.+||||++.+. ..
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 10 ENLGRIQFSVGYN-------------------------FQESTLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKH 61 (141)
T ss_dssp CCCCEEEEEEEEC-------------------------SSSCCEEEEEEEEESCCCC---SSSSCCCEEEEEEEESCCSS
T ss_pred ceeeEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCC---CCCCCCCcEEEEEEECCCCc
Confidence 3478988888642 2337999999999999987 667899999999993 45
Q ss_pred EEEeecccCCCCCeecceEEEEeeC----CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 399 WVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 399 ~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
.+||++++++.||+|||+|.|.+.. ....|.|+|||++.++ ++++||.+.|++.++..+.....||+|..
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFS------RNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSS------SCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCC------CCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 7999999999999999999998642 3578999999999875 89999999999999988888899999987
Q ss_pred c
Q 004127 475 L 475 (772)
Q Consensus 475 ~ 475 (772)
.
T Consensus 136 ~ 136 (141)
T 2d8k_A 136 S 136 (141)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=154.56 Aligned_cols=117 Identities=32% Similarity=0.457 Sum_probs=101.3
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeecCCCCCeeccEEEEEec--cC
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSKD--RI 98 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~--~~ 98 (772)
.|.+.+++.|.. ..+.|.|+|++|+||+..+..+.+||||++++. .++.+|++++++.||+|||+|.|.+. ++
T Consensus 20 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 97 (143)
T 3f04_A 20 LGKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97 (143)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHH
T ss_pred eEEEEEEEEEeC--CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhc
Confidence 566778887774 557999999999999999988999999999994 46889999999999999999999985 33
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
....|.|+|||++.+ +|++||++.++|.++..+. ....|++|++
T Consensus 98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~ 142 (143)
T 3f04_A 98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTS-----CEEEEEECBC
T ss_pred CCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCC-----CcceEEECcC
Confidence 458999999999998 9999999999999997652 3568999975
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=150.99 Aligned_cols=123 Identities=22% Similarity=0.296 Sum_probs=98.7
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC--EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHG 440 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~ 440 (772)
..|+|+|++|++|+.+ |..|.+||||++.+++ +.+||+++++|+||+|||.|.|.+.++. .|.|+|||++.++.
T Consensus 5 ~~L~V~v~~a~~L~~~---d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~ 80 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHK 80 (132)
T ss_dssp EEEEEEEEEEESCCCC---STTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTS
T ss_pred EEEEEEEEEeECCCCC---CCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCC
Confidence 5899999999999987 6778999999999964 7899999999999999999999998764 49999999998640
Q ss_pred CCCCCCCcccEEEEEecCcc-ccCceEeeeEeeeecCCCC-cccccEEEEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTL-ETDRVYTHSYPLLVLHPSG-VRKMGEVQLAVRF 492 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g-~~~~G~i~l~~~f 492 (772)
+..|++||.+.|++.++ ........|++|....+.+ .+..|+|++++..
T Consensus 81 ---~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 81 ---KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp ---STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred ---CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 11389999999999988 2223235789997653222 2347999988864
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=158.26 Aligned_cols=117 Identities=32% Similarity=0.548 Sum_probs=101.6
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------eeeeeeecCCCCCeecc
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY--------------KGTTKHFEKKSNPEWNQ 89 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~--------------~~kT~~~~~t~nP~Wne 89 (772)
.|.+.+++.|+ .+.|.|+|++|+||++.+..|.+||||++++++. +.+|+++++|.||+|||
T Consensus 6 ~G~i~~~l~y~----~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T 1rh8_A 6 TGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred ceEEEEEEEEc----CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence 57788998888 5799999999999999998999999999999873 47999999999999999
Q ss_pred EEEEE-ec--cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 90 CFAFS-KD--RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 90 ~f~f~-v~--~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+|.|. +. ++....|.|+|||++.+ +|++||++.++|.++.... ...+||+|.+..
T Consensus 82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T 1rh8_A 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCC-----CCCeEEECCccC
Confidence 99997 53 33467999999999998 8999999999999986542 257999998764
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-18 Score=157.34 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=91.6
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC------EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVG 431 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~ 431 (772)
..+.|.|.|++|+||+++ |..|.+||||++++.+ ..+||+++++|+||+|||+|.|.+... ...|.|+
T Consensus 41 ~~~~L~V~Vi~a~~L~~~---d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~ 117 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVD 117 (155)
T ss_dssp TTTEEEEEEEEEECGGGT---CCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEE
T ss_pred CCCEEEEEEEEccCcCCc---ccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEE
Confidence 348999999999999988 6778999999999954 269999999999999999999998742 5689999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccc-cCceEeeeEeee
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLE-TDRVYTHSYPLL 473 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~-~~~~~~~~~~L~ 473 (772)
|||+|.++ ++++||.+.|+|.++. .+....+||+|.
T Consensus 118 V~d~d~~~------~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 118 VCTTDRSH------LEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEECTTS------CEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEECCCCC------CCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 99999875 8999999999999995 466778999985
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=156.80 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=101.4
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHG 440 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~ 440 (772)
..+.|+|+|++|++|+.. +..+.+||||+|.++++.+||+++++|+||+|||+|.|.+. +...|.|+|||+|.++
T Consensus 34 ~~~~L~V~V~~A~~L~~~---~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~- 108 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK- 108 (173)
T ss_dssp CCEEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS-
T ss_pred CceEEEEEEEEeECCCCc---ccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCC-
Confidence 447899999999999844 23345999999999999999999999999999999999884 5889999999999875
Q ss_pred CCCCCCCcccEEEEEecCccccC-----ceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETD-----RVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||.+.+++.++..+ .....|++|.... .+.+..|+|.+.+.+.+
T Consensus 109 -----~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~-~~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 109 -----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK-EPTETIGDLSICLDGLQ 161 (173)
T ss_dssp -----CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS-CTTSEEEEEEEEEESEE
T ss_pred -----CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC-CCCcccEEEEEEEeeee
Confidence 899999999999998532 1236799998763 23345799999998754
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-18 Score=155.85 Aligned_cols=119 Identities=27% Similarity=0.497 Sum_probs=102.2
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeecCCCCCeeccEEEEEe-c-
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG-----NYKGTTKHFEKKSNPEWNQCFAFSK-D- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v-~- 96 (772)
.|.+.+++.|... .+.|.|+|++|+||+..+..+.+||||++++. .++++|+++++|.||+|||+|.|.+ .
T Consensus 7 ~G~i~~~l~y~~~--~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~ 84 (141)
T 1v27_A 7 GGQLSIKLWFDKV--GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 84 (141)
T ss_dssp CCEEEEEEEEETT--TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred ccEEEEEEEEeCC--CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence 5778888888754 46999999999999999988999999999993 4688999999999999999999994 2
Q ss_pred -cCCCceEEEEEEecCCC-C--CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 97 -RIQASVLEVLVKDKDVV-L--DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 97 -~~~~~~L~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
++....|.|+|||++.. + +++||++.++|.++.... ..+||+|.+.+.
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~L~~~~~ 136 (141)
T 1v27_A 85 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQTHDS 136 (141)
T ss_dssp TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS------EEEEEECBCCSS
T ss_pred HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC------CCceEECccccc
Confidence 33458999999999998 5 999999999999986542 579999998653
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=157.66 Aligned_cols=122 Identities=17% Similarity=0.300 Sum_probs=102.6
Q ss_pred cccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----
Q 004127 322 KFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG----- 396 (772)
Q Consensus 322 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~----- 396 (772)
...|+|.+.+... +..+.|.|.|++|+||+.++ +..|.+||||++.++
T Consensus 7 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~d--~~~~~~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 7 FVTGRIAFSLKYE-------------------------QQTQSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSR 59 (148)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCSB--TTTTBCCEEEEEEEETCCSG
T ss_pred ccceEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCcc--cCCCCCCeEEEEEEEcCCcc
Confidence 3478998888743 23489999999999999873 146889999999995
Q ss_pred CEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 397 QKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 397 ~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
...+||+++++|+||+|||+|.|.+... ...|.|+|||++.++ +|++||.+.|+|.++..+.....||+|.
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 133 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG------RNTFLGEAEIQMDSWKLDKKLDHCLPLH 133 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG------CEEEEEEEEEEHHHHHHHCCSEEEEECB
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc------CCcEEEEEEEEcccccccCCccceEECc
Confidence 2478999999999999999999998753 457999999999876 8999999999999998776778999998
Q ss_pred ecC
Q 004127 474 VLH 476 (772)
Q Consensus 474 ~~~ 476 (772)
+..
T Consensus 134 ~~~ 136 (148)
T 3fdw_A 134 GKI 136 (148)
T ss_dssp CC-
T ss_pred Ccc
Confidence 754
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=153.60 Aligned_cols=105 Identities=24% Similarity=0.353 Sum_probs=93.6
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---CCEEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEe
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFD 434 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---~~~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D 434 (772)
..+.|.|+|++|++|+.+ +..|.+||||++.+ +.+.+||+++++|.||+|||+|.|.+.. ....|.|+|||
T Consensus 32 ~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 108 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp TTTEEEEEEEEEECCCCB---GGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCC---CCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEe
Confidence 348999999999999987 55688999999999 4567999999999999999999999874 34789999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
++.++ +|++||.+.++|.++..+....+||+|..
T Consensus 109 ~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 109 FDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CCSSS------CCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred CCCCC------CCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 99875 89999999999999998888899999964
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=149.73 Aligned_cols=102 Identities=20% Similarity=0.388 Sum_probs=85.4
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v 432 (772)
.+.|.|+|++|+||+.+ +..|.+||||++.+ +...+||+++++|.||+|||+|.|.+.. ....|.|+|
T Consensus 17 ~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V 93 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 93 (129)
T ss_dssp TTEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEE
Confidence 38999999999999987 66789999999999 4568999999999999999999999642 257899999
Q ss_pred EeCCcCCCCCCCCC--CcccEEEEEecCccccCceEeeeEeee
Q 004127 433 FDNGHIHGQGGGGK--DSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 433 ~D~~~~~~~~~~~~--~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
||++.++ + +++||.+.+++.++.... ..+||+|.
T Consensus 94 ~d~d~~~------~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 94 WDQARVR------EEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp EEC-------------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred EECCcCc------CcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 9999864 4 999999999999987654 68999973
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=149.71 Aligned_cols=116 Identities=18% Similarity=0.308 Sum_probs=98.3
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
.|.+.+++.|+.. .+.|.|+|++|++ .|..|.+||||++++.+ .+.+|+++++|.||+|||+|.|.+..
T Consensus 12 ~G~l~~sl~y~~~--~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~ 86 (138)
T 1wfm_A 12 APKLHYCLDYDCQ--KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp CCEEEEEEEEETT--TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred ceEEEEEEEEeCC--CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence 6778999988754 4699999999993 67788999999999942 36899999999999999999999853
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+....|.|+|||++.+ +|++||++.++|.++... ....+|++|.+..
T Consensus 87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~-----~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP-----LGAAQWGELKTSG 134 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSC-----TTCCEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCc-----ccccceeeCcCCC
Confidence 3457899999999998 999999999999999643 2367999998764
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-17 Score=148.37 Aligned_cols=119 Identities=18% Similarity=0.290 Sum_probs=99.5
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-C-
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN--YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-L- 114 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~- 114 (772)
...|+|+|++|++|++.|..|.+||||++++++ ++++|+++++|.||+|||+|.|.+... +.|.|+|||++.. +
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence 458999999999999999999999999999985 789999999999999999999999764 4599999999987 4
Q ss_pred --CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC---ceeeeEEEEEEEe
Q 004127 115 --DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD---KVKTGELMLAVWM 164 (772)
Q Consensus 115 --d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---~~~~G~l~l~~~~ 164 (772)
|++||++.+++.++..... ...+|++|....+. ... |+|.++++.
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~----~~~~~~~L~~~~~~~~~~~~-G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKD----TGYQRLDLCKLNPSDTDAVR-GQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTT----SCCEEEECBCSSTTCCCCCC-SEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccc----cCcEEEeeeecCCCCCCcee-EEEEEEEEc
Confidence 8999999999998843321 13589999876322 245 999998854
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=151.43 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=99.9
Q ss_pred cccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC----
Q 004127 322 KFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---- 397 (772)
Q Consensus 322 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---- 397 (772)
...|+|++.+... +..+.|.|.|++|+||+.+ +..| +||||++++.+
T Consensus 8 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g-~dpyv~v~l~~~~~~ 58 (142)
T 2dmg_A 8 SPLGQIQLTIRHS-------------------------SQRNKLIVVVHACRNLIAF---SEDG-SDPYVRMYLLPDKRR 58 (142)
T ss_dssp CSSCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCS---STTC-CCEEEEEEEESCCCS
T ss_pred CCcceEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCC---CCCC-CCeeEEEEEEcCCCC
Confidence 4479998888743 2337999999999999988 6667 99999999932
Q ss_pred -EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 398 -KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 398 -~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
..+||+++++|+||+|||+|.|.+.. ....|.|+|||++.++. ..+++||.+.|++.++..+....+||+|.
T Consensus 59 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~----~~~~~iG~~~i~l~~~~~~~~~~~W~~L~ 134 (142)
T 2dmg_A 59 SGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLS----KDKGLLGKVLVALASEELAKGWTQWYDLT 134 (142)
T ss_dssp SSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSC----CSCCCCEEEEEECCCSTTTTCBCCBCCCB
T ss_pred CCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccc----cCCcEEEEEEEecccccccccccceeecc
Confidence 56899999999999999999999864 24589999999997641 12579999999999998777788999998
Q ss_pred ec
Q 004127 474 VL 475 (772)
Q Consensus 474 ~~ 475 (772)
..
T Consensus 135 ~~ 136 (142)
T 2dmg_A 135 ED 136 (142)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=153.11 Aligned_cols=118 Identities=23% Similarity=0.371 Sum_probs=100.0
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEe--c
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSK--D 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v--~ 96 (772)
.|...+++.|+.. .+.|.|+|++|+||+..+ .|.+||||++++.+ .+.+|+++++|.||+|||+|.|.+ .
T Consensus 13 ~G~~~lsL~y~~~--~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 89 (153)
T 3fbk_A 13 QGAGQLRLSIDAQ--DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE 89 (153)
T ss_dssp CCCCEEEEEEEES--SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGG
T ss_pred CCEEEEEEEEECC--CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccH
Confidence 5778888888764 469999999999999998 68999999999943 578999999999999999999998 4
Q ss_pred cCCCceEEEEEEecCCC-C-CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 97 RIQASVLEVLVKDKDVV-L-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~-d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+. ...|.|+|||.+.+ + |++||++.++|.++.... .....||+|.+..
T Consensus 90 ~~-~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~----~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 90 DD-QKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD----KEISGWYYLLGEH 139 (153)
T ss_dssp GT-TSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC------CCEEEEEECBCTT
T ss_pred Hh-CCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCC----CccccEEECCChh
Confidence 44 35699999999997 5 999999999999997521 2357899998865
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=148.64 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=91.5
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEE-eeC---CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWE-VFD---PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~-v~~---~~~~l~i~v 432 (772)
.+.|.|.|++|+||+. +..|.+||||++++ +...+||+++++|+||+|||+|.|. +.. ....|.|+|
T Consensus 19 ~~~L~V~V~~a~~L~~----~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V 94 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT----EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV 94 (134)
T ss_dssp TTEEEEEEEEEECCCC----TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred CCEEEEEEEEeeCCCC----CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence 3799999999999985 45688999999998 3467899999999999999999999 763 457999999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
||++.++ ++++||.+.|+|.++..+.....||+|.+.
T Consensus 95 ~d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 131 (134)
T 2b3r_A 95 LSAESLR------ENFFLGGITLPLKDFNLSKETVKWYQLTAA 131 (134)
T ss_dssp EECCSSS------CCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred EECCCCC------CCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence 9999875 889999999999999988888999999753
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=150.77 Aligned_cols=121 Identities=17% Similarity=0.358 Sum_probs=100.4
Q ss_pred cccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----C
Q 004127 322 KFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----G 396 (772)
Q Consensus 322 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~ 396 (772)
...|+|.+.+... +..+.|.|.|++|+||+.+ +..|.+||||++++ +
T Consensus 5 ~~~G~i~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~ 56 (141)
T 1v27_A 5 SSGGQLSIKLWFD-------------------------KVGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSD 56 (141)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---SSSCCCCEEEECCCSSCCSS
T ss_pred CcccEEEEEEEEe-------------------------CCCCEEEEEEEEccCCCCc---CCCCCCCCEEEEEEecCCCC
Confidence 3479998888753 2337999999999999987 66789999999998 4
Q ss_pred CEEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 397 QKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 397 ~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
...+||+++++|+||+|||.|.|.+.. ....|.|+|||++.++ .+++++||.+.|++.++.... ..+||+|
T Consensus 57 ~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~----~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 131 (141)
T 1v27_A 57 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR----EEESEFLGEILIELETALLDD-EPHWYKL 131 (141)
T ss_dssp SSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSS----SCCBCCCEEEEEEGGGCCCSS-EEEEEEC
T ss_pred CcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCc----CCCCceEEEEEEEccccCCCC-CCceEEC
Confidence 567999999999999999999999542 2478999999999864 112899999999999986654 7899999
Q ss_pred eec
Q 004127 473 LVL 475 (772)
Q Consensus 473 ~~~ 475 (772)
...
T Consensus 132 ~~~ 134 (141)
T 1v27_A 132 QTH 134 (141)
T ss_dssp BCC
T ss_pred ccc
Confidence 865
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=155.95 Aligned_cols=104 Identities=23% Similarity=0.338 Sum_probs=92.4
Q ss_pred cEEEEEEEEecCCCCCccCCC-CCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEE-eC
Q 004127 363 GILELGVLSAHGLTPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVF-DN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~-D~ 435 (772)
+.|.|+|++|+||+.+ |. .|.+||||+|.+++ ..+||+++++|+||+|||+|.|.+......|.|+|| |+
T Consensus 30 ~~L~V~v~~a~~L~~~---d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQK---PGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDY 106 (171)
T ss_dssp TEEEEEEEEEESCCCC---C---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCC---CcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcC
Confidence 7999999999999987 53 68899999999843 378999999999999999999998766789999999 99
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|.++ +|++||.+.|+|.++..+....+||+|...
T Consensus 107 d~~~------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 107 GRMD------HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp STTC------SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCC------CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 9865 899999999999999888888999999865
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=146.90 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=88.5
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---C-EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEe
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---Q-KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFD 434 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~---~-~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D 434 (772)
.+.|.|+|++|++ + |..|.+||||++.+. + ..+||+++++|+||+|||+|.|.+... ...|.|+|||
T Consensus 25 ~~~L~V~v~~a~~---~---d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d 98 (138)
T 1wfm_A 25 KAELFVTRLEAVT---S---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT 98 (138)
T ss_dssp TTEEEEEEEEEEC---C---CCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred CCEEEEEEEEEEc---C---CCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEE
Confidence 3799999999994 3 667899999999993 2 358999999999999999999998753 5689999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+|.++ +|++||.+.++|.++..+....+|++|...
T Consensus 99 ~d~~~------~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 99 CDRFS------RHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CCSSC------TTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred CCCCC------CCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 99875 899999999999999766677899999864
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=154.74 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=100.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~ 97 (772)
.|.+.+++.|.. ..+.|.|+|++|+||+..+ ..+.+||||++++.+ .+.+|+++++|.||+|||+|.|.+..
T Consensus 9 ~G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 86 (148)
T 3fdw_A 9 TGRIAFSLKYEQ--QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86 (148)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCS
T ss_pred ceEEEEEEEEeC--CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeCh
Confidence 466788887774 4569999999999999888 578999999999973 47899999999999999999999854
Q ss_pred C--CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 98 I--QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 98 ~--~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
. ....|.|+|||++.+ +|++||++.++|.++..+. ...+||+|.++.+
T Consensus 87 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDK-----KLDHCLPLHGKIS 137 (148)
T ss_dssp TTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHC-----CSEEEEECBCC--
T ss_pred hHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccC-----CccceEECcCccc
Confidence 2 356799999999998 8999999999999997553 2569999988753
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=147.42 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=89.0
Q ss_pred ccEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEE-eeC---CCcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWE-VFD---PCTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~-v~~---~~~~l~i~v~ 433 (772)
.+.|.|.|++|+||+.+ |.. |.+||||++.++ ...+||+++++|+||+|||.|.|. +.. ....|.|+||
T Consensus 21 ~~~L~v~v~~a~~L~~~---d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~ 97 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAM---DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTIL 97 (138)
T ss_dssp GTEEEEEEEEEESCCCC---BTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEE
Confidence 37999999999999987 553 889999999995 368999999999999999999996 553 2468999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCc-eEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDR-VYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 475 (772)
|++.++ +|++||.+.|+|.++..+. ....|++|...
T Consensus 98 d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 98 SFDRFS------RDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp EECSSC------CCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred ECCCCC------CCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 999875 8999999999999997653 44567888754
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=151.59 Aligned_cols=120 Identities=27% Similarity=0.401 Sum_probs=101.3
Q ss_pred CcccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEE-e
Q 004127 22 GSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFS-K 95 (772)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~-v 95 (772)
...|.+.+++.|+ +..+.|.|+|++|+||+..+..|.+||||++++.+ .+++|++++++.||+|||+|.|. +
T Consensus 13 ~~~G~l~~~l~y~--~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~ 90 (142)
T 2chd_A 13 TTLGALEFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90 (142)
T ss_dssp -CCCEEEEEEEEE--GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESC
T ss_pred CccceEEEEEEEe--CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEccc
Confidence 3457788888887 45679999999999999999889999999999976 67899999999999999999998 5
Q ss_pred cc--CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 96 DR--IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 96 ~~--~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
.. +....|.|+|||++.+ +|++||++.++|.++..+. ....|++|+.+
T Consensus 91 ~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~~~~L~~p 141 (142)
T 2chd_A 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQ-----RKNFNICLERV 141 (142)
T ss_dssp CHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTC-----CEEEEEECBCC
T ss_pred CHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCC-----ccEEEEecccC
Confidence 32 2246899999999998 8999999999999997653 35678888754
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-17 Score=151.89 Aligned_cols=116 Identities=31% Similarity=0.460 Sum_probs=99.8
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccC
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRI 98 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~ 98 (772)
.|.+.+++.|. .+.|.|+|++|+||+..+..+.+||||++++.+ .+.+|++++++.||+|||+|.|.+...
T Consensus 19 ~G~l~~~l~~~----~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 94 (149)
T 1a25_A 19 RGRIYIQAHID----REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94 (149)
T ss_dssp TCEEEEEEEES----SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSG
T ss_pred ceEEEEEEEec----CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccc
Confidence 46677777763 368999999999999999889999999999974 578999999999999999999998643
Q ss_pred -CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 99 -QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 99 -~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
....|.|+|||++.. +|++||++.++|.++.... ..+||+|.+.+
T Consensus 95 ~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~------~~~W~~L~~~~ 141 (149)
T 1a25_A 95 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 141 (149)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC------EEEEEECBCHH
T ss_pred cCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc------cCCeEEccCCC
Confidence 246899999999998 8999999999999997542 57899998753
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-17 Score=152.54 Aligned_cols=105 Identities=24% Similarity=0.344 Sum_probs=90.9
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEee--CCCcEEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVF--DPCTVITVGVF 433 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~--~~~~~l~i~v~ 433 (772)
..+.|.|+|++|+||+.+ + .|.+||||++.+ +...+||+++++|+||+|||+|.|.+. +....|.|+||
T Consensus 25 ~~~~L~V~v~~a~~L~~~---d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~ 100 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISK---Q-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVW 100 (153)
T ss_dssp SSSEEEEEEEEEESCCCC---S-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCC---C-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEE
Confidence 348999999999999987 5 488999999998 234699999999999999999999984 45567999999
Q ss_pred eCCcCCCCCCCCC-CcccEEEEEecCcccc-CceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGK-DSRIGKVRIRLSTLET-DRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~-~~~lG~~~i~l~~l~~-~~~~~~~~~L~~~ 475 (772)
|++.++ + |++||.+.+++.++.. +.....||+|...
T Consensus 101 d~d~~~------~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 101 NRASQS------RQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp ECCSSG------GGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred eCCCCC------CCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 999864 5 8999999999999985 7788999999874
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=150.52 Aligned_cols=103 Identities=25% Similarity=0.406 Sum_probs=91.5
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeCC--CcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFDP--CTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~~--~~~l~i~v~D~ 435 (772)
+.|.|+|++|+||+.+ +..|.+||||+|+++ ...+||+++++++||+|||+|.|.+... ...|.|+|||+
T Consensus 31 ~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 107 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 107 (149)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCC---CCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence 6899999999999987 667899999999996 3579999999999999999999999763 46899999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+.++ +|++||.+.|++.++..+ ...+||+|...
T Consensus 108 d~~~------~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 140 (149)
T 1a25_A 108 DLTS------RNDFMGSLSFGISELQKA-GVDGWFKLLSQ 140 (149)
T ss_dssp CSSS------CCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred CCCC------CCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence 9875 899999999999999776 47899999764
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=153.79 Aligned_cols=104 Identities=25% Similarity=0.364 Sum_probs=91.3
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE--------------EEEeecccCCCCCeecceEEEE-eeC---C
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK--------------WVRTRTIVDSFGPRWNEQYTWE-VFD---P 424 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~--------------~~~T~~~~~t~~P~Wne~~~~~-v~~---~ 424 (772)
|.|.|+|++|+||+.+ |..|.+||||++.+++. .+||+++++|+||+|||.|.|. +.. .
T Consensus 18 ~~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~ 94 (142)
T 1rh8_A 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEecCCCCC---CCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHcc
Confidence 7899999999999987 66789999999999752 4799999999999999999997 542 4
Q ss_pred CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 425 CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 425 ~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
...|.|+|||++.++ ++++||.+.|++.++..+.....||+|...
T Consensus 95 ~~~l~i~V~d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 95 KKTLEVTVWDYDRFS------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TCEEEEEEEEECSSS------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEEEEEECCCCC------CCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 678999999999875 899999999999999877677899999753
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-17 Score=150.30 Aligned_cols=120 Identities=28% Similarity=0.367 Sum_probs=100.5
Q ss_pred cccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc
Q 004127 23 SITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR 97 (772)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~ 97 (772)
..|.+.+++.|.. ..+.|.|+|++|+||++.+..| +||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 9 ~~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 85 (142)
T 2dmg_A 9 PLGQIQLTIRHSS--QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85 (142)
T ss_dssp SSCEEEEEEEEET--TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred CcceEEEEEEEeC--CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence 3577888888764 4579999999999999999888 99999999953 57899999999999999999999843
Q ss_pred --CCCceEEEEEEecCCC-C--CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 98 --IQASVLEVLVKDKDVV-L--DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 98 --~~~~~L~i~V~d~~~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
+....|.|+|||++.+ + |++||++.++|.++.... ...+||+|.+..+
T Consensus 86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK-----GWTQWYDLTEDSG 138 (142)
T ss_dssp HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT-----CBCCBCCCBCSCS
T ss_pred HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccc-----cccceeeccCCCC
Confidence 2346899999999987 3 479999999999987542 3678999988653
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-17 Score=155.84 Aligned_cols=116 Identities=25% Similarity=0.333 Sum_probs=99.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDV-TGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~ 97 (772)
.|.+.+++.| ..+.|.|+|++|+||++.|. .|.+||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 18 ~G~l~~~l~y----~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 93 (171)
T 2q3x_A 18 MGDIQIGMED----KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP 93 (171)
T ss_dssp CCEEEEEEEE----ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC
T ss_pred ccEEEEEEEE----CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC
Confidence 5778888888 36799999999999999985 68999999999975 37899999999999999999999854
Q ss_pred CCCceEEEEEE-ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 98 IQASVLEVLVK-DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 98 ~~~~~L~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
....|.|+|| |++.+ +|++||++.++|.++..+. ...+||+|.+..
T Consensus 94 -~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 141 (171)
T 2q3x_A 94 -QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSS-----MVIGWYKLFPPS 141 (171)
T ss_dssp -TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTS-----CEEEEEECBCGG
T ss_pred -CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCC-----CcceeEECCCcc
Confidence 4688999999 99998 8999999999999997543 367999998764
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=149.24 Aligned_cols=120 Identities=27% Similarity=0.328 Sum_probs=100.0
Q ss_pred cccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC----
Q 004127 322 KFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---- 397 (772)
Q Consensus 322 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---- 397 (772)
...|+|++.+... +..+.|.|+|++|+||+.+ |..|.+||||++.+++
T Consensus 9 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 9 EKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKR 60 (159)
T ss_dssp GCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEE
T ss_pred CcCCeEEEEEEEc-------------------------CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCce
Confidence 3479999888742 2348999999999999987 6678999999999842
Q ss_pred -EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc------------c
Q 004127 398 -KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL------------E 461 (772)
Q Consensus 398 -~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l------------~ 461 (772)
..+||+++++|+||+|||+|.|.+... ...|.|+|||++.++ +|++||.+.|++..+ .
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~w~~l~~~ 134 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLAN 134 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCEEEEEEEEETTCCHHHHHHHHHHHHS
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC------CCceEEEEEECCCCCCcHHHHHHHHHHC
Confidence 468999999999999999999998753 467999999999875 899999999999954 2
Q ss_pred cCceEeeeEeeeec
Q 004127 462 TDRVYTHSYPLLVL 475 (772)
Q Consensus 462 ~~~~~~~~~~L~~~ 475 (772)
.+....+||+|...
T Consensus 135 ~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 135 PRRPIAQWHTLQVE 148 (159)
T ss_dssp TTCCEEEEEECBCH
T ss_pred CCCeeeeEEECcCc
Confidence 45677899998753
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=147.79 Aligned_cols=120 Identities=22% Similarity=0.313 Sum_probs=100.3
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEE-ec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFS-KD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~-- 96 (772)
.|.+.+++.|+. ..+.|.|+|++|+||+..+.. +.+||||++++.+ ++++|++++++.||+|||+|.|. +.
T Consensus 8 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~ 85 (138)
T 1ugk_A 8 LGTLFFSLEYNF--ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85 (138)
T ss_dssp CCEEEEEEEEEG--GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred cEEEEEEEEEEC--CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHH
Confidence 567788887764 457999999999999999974 8999999999964 68999999999999999999995 53
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
++....|.|+|||++.+ +|++||++.++|.++.... .....|++|...+
T Consensus 86 ~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~----~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE----GKMLMNREIISGP 135 (138)
T ss_dssp TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTT----CCEEEEEECBSSS
T ss_pred HhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCC----CcchhhhhhhcCC
Confidence 22457899999999998 8999999999999997653 2235678987654
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=145.72 Aligned_cols=103 Identities=21% Similarity=0.332 Sum_probs=85.9
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC---cEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC---TVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~---~~l~i~v 432 (772)
..+.|.|.|++|+||+.+ +..|.+||||++.+++ ..++|++++++.||.|||+|.|.+.... ..|.|+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V 90 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAM---DIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITV 90 (138)
T ss_dssp TTTEEEEEEEEEESCCCC---BTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEE
T ss_pred CCCeEEEEEEEeeCCCCc---CCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEE
Confidence 348999999999999987 6678999999999953 4689999999999999999999987543 6899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
||++.++ +|++||.+.|++.++..+. .+|++|..
T Consensus 91 ~d~~~~~------~~~~lG~~~i~l~~~~~~~--~~W~~l~~ 124 (138)
T 3n5a_A 91 MDKDKLS------RNDVIGKIYLSWKSGPGEV--KHWKDMIA 124 (138)
T ss_dssp EECCSSS------CCEEEEEEEESSSSCHHHH--HHHHHHHH
T ss_pred EECCCCC------CCcEEEEEEEccccCChHH--HHHHHHHh
Confidence 9999875 8999999999999864322 45555543
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=148.23 Aligned_cols=104 Identities=24% Similarity=0.419 Sum_probs=91.1
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEE-eeCC---CcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWE-VFDP---CTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~-v~~~---~~~l~i~v 432 (772)
.+.|.|+|++|+||+.+ +..|.+||||++++++ ..+||++++++.||+|||.|.|. +... ...|.|+|
T Consensus 28 ~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 104 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISV 104 (142)
T ss_dssp GTEEEEEEEEEESCCCC---CTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEE
T ss_pred CCEEEEEEEEecCCCCC---CCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEE
Confidence 37999999999999987 6678999999999965 67999999999999999999998 5432 36899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
||++.++ +|++||.+.+++.++..+.....|++|..
T Consensus 105 ~d~d~~~------~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 105 CDEDKFG------HNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEECTTS------CEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred EECCCCC------CCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 9999875 88999999999999998887778888753
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=148.88 Aligned_cols=106 Identities=17% Similarity=0.309 Sum_probs=91.2
Q ss_pred cccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC----
Q 004127 322 KFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---- 397 (772)
Q Consensus 322 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---- 397 (772)
...|+|.+.+... +..+.|.|.|++|+||+.+ +..|.+||||++++++
T Consensus 21 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 21 EERGKILVSLMYS-------------------------TQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGK 72 (166)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETC---
T ss_pred CccceEEEEEEEE-------------------------CCCCEEEEEEEEeECCCCc---cCCCCCCcEEEEEEECCCCc
Confidence 4478988887642 2348999999999999987 6678999999999965
Q ss_pred -EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccc
Q 004127 398 -KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE 461 (772)
Q Consensus 398 -~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~ 461 (772)
..+||+++++|+||+|||+|.|.+... ...|.|+|||++.++ ++++||.+.|++.++.
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK------SNDYIGGCQLGISAKG 134 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCEEEEEEEEETTCCH
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCC------CCcEEEeEEEecccCC
Confidence 579999999999999999999999752 468999999999875 8999999999999863
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=149.17 Aligned_cols=119 Identities=28% Similarity=0.308 Sum_probs=99.5
Q ss_pred cccCCcceeeecCcCceeEEEEEEEEeecCCCC-CC------CCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEE
Q 004127 23 SITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGK-DV------TGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFA 92 (772)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~-~~------~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~ 92 (772)
..|.+.+++.|+. ..+.|.|+|++|+||+.. +. .+.+||||++++.+ ++++|++++++.||+|||+|.
T Consensus 11 ~~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~ 88 (147)
T 2enp_A 11 QLGMLHFSTQYDL--LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYT 88 (147)
T ss_dssp CCCEEEEEEEEET--TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCE
T ss_pred cceEEEEEEEEcC--CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEE
Confidence 3677888988875 456999999999999984 43 35899999999973 578999999999999999999
Q ss_pred EEecc--CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 93 FSKDR--IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 93 f~v~~--~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
|.+.. +....|.|+|||++.+ +|++||++.++|.++.... ....|++|.+.
T Consensus 89 f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~ 142 (147)
T 2enp_A 89 FEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK-----GGHWWKALIPS 142 (147)
T ss_dssp ECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTT-----CCCEEECCBCC
T ss_pred EEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCC-----CccEEEEeecC
Confidence 99853 2346899999999998 8999999999999996542 24689999865
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=149.92 Aligned_cols=121 Identities=30% Similarity=0.368 Sum_probs=100.0
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
.|.+.+++.|.. ..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|+++++|.||+|||+|.|.+..
T Consensus 11 ~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 88 (159)
T 1tjx_A 11 LGDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88 (159)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred CCeEEEEEEEcC--CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHH
Confidence 577788887764 4569999999999999999889999999999963 46899999999999999999999853
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEcccc----------CCCCCCCCCCCCeEEEeecCC
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEV----------PKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l----------~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+....|.|+|||++.+ +|++||.+.+++..+ .... .....+||+|....
T Consensus 89 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~---~~~~~~W~~L~~~~ 149 (159)
T 1tjx_A 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP---RRPIAQWHTLQVEE 149 (159)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHST---TCCEEEEEECBCHH
T ss_pred HhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCC---CCeeeeEEECcCcc
Confidence 2356899999999998 899999999999854 2111 23357899998653
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=149.61 Aligned_cols=103 Identities=26% Similarity=0.355 Sum_probs=91.0
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
.|.+.+++.|.. ..+.|.|+|++|+||+..+..|.+||||++++++ .+++|+++++|.||+|||+|.|.+..
T Consensus 23 ~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 100 (166)
T 2cm5_A 23 RGKILVSLMYST--QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100 (166)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred cceEEEEEEEEC--CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchH
Confidence 566777777764 5679999999999999999889999999999986 57899999999999999999999853
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEcccc
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 128 (772)
+....|.|+|||++.+ +|++||++.+++.++
T Consensus 101 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred hcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 2357999999999998 899999999999975
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=147.65 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=100.4
Q ss_pred cccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCC-ccC---CCCCCcCcEEEEEEC-
Q 004127 322 KFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPM-KTK---DGRGTTDAYCVAKYG- 396 (772)
Q Consensus 322 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~-~~~---~~~g~~dpyv~v~~~- 396 (772)
...|+|++.+... +..+.|.|+|++|+||+.. +.. +..|.+||||+|++.
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~ 64 (147)
T 2enp_A 10 YQLGMLHFSTQYD-------------------------LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64 (147)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEET
T ss_pred CcceEEEEEEEEc-------------------------CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEe
Confidence 4478998888743 2348999999999999973 221 124689999999995
Q ss_pred --CEEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEe
Q 004127 397 --QKWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYP 471 (772)
Q Consensus 397 --~~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 471 (772)
...+||+++++++||+|||+|.|.+.. ....|.|+|||++.++ ++++||.+.|+|.++..+.....|++
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~ 138 (147)
T 2enp_A 65 DQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS------RHCVIGKVSVPLCEVDLVKGGHWWKA 138 (147)
T ss_dssp CCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC------CSCCCEEEEEETTTSCTTTCCCEEEC
T ss_pred CCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc------CCcEEEEEEEechhcCCCCCccEEEE
Confidence 357899999999999999999999874 2468999999999875 88999999999999977666678999
Q ss_pred eeec
Q 004127 472 LLVL 475 (772)
Q Consensus 472 L~~~ 475 (772)
|...
T Consensus 139 L~~~ 142 (147)
T 2enp_A 139 LIPS 142 (147)
T ss_dssp CBCC
T ss_pred eecC
Confidence 8754
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=146.32 Aligned_cols=103 Identities=30% Similarity=0.471 Sum_probs=89.7
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccC-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRI- 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~- 98 (772)
|.+.+++.|. +..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+...
T Consensus 3 G~l~~sl~y~--~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 80 (138)
T 3n5a_A 3 GELLLSLCYN--PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80 (138)
T ss_dssp CEEEEEEEEE--TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGG
T ss_pred cEEEEEEEEc--CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhh
Confidence 5677787776 45579999999999999999889999999999975 478999999999999999999998542
Q ss_pred -CCceEEEEEEecCCC-CCceeEEEEEEccccC
Q 004127 99 -QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVP 129 (772)
Q Consensus 99 -~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~ 129 (772)
....|.|+|||++.+ +|++||++.+++.++.
T Consensus 81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 246899999999998 8999999999998753
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=143.67 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=81.6
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCE---EEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQK---WVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~---~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~ 433 (772)
.+.|.|.|++|+||+.+ +..|.+||||+|.+ ++. .+||+++++|+||+|||+|.|.+... ...|.|+||
T Consensus 29 ~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~ 105 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL 105 (153)
T ss_dssp TTEEEEEEEEEESCC---------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred CCEEEEEEEEeECCCCc---CCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEE
Confidence 48999999999999987 66688999999999 443 57999999999999999999998764 368999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
|++.++ ++++||.+.|++.+. +....+|++|..
T Consensus 106 d~d~~~------~~~~lG~~~i~l~~~--~~~~~~W~~l~~ 138 (153)
T 1w15_A 106 DSERGS------RNEVIGRLVLGATAE--GSGGGHWKEICD 138 (153)
T ss_dssp ECCTTS------CCEEEEEEEESTTCC--SHHHHHHHHHHH
T ss_pred eCCCCC------CCcEEEEEEECCCCC--chHHHHHHHHHh
Confidence 999865 899999999999983 333456666654
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=145.73 Aligned_cols=102 Identities=30% Similarity=0.388 Sum_probs=83.7
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeeeeeecCCCCCeeccEEEEEeccC
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG--NY---KGTTKHFEKKSNPEWNQCFAFSKDRI 98 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~~---~~kT~~~~~t~nP~Wne~f~f~v~~~ 98 (772)
.|.+.+++.|.- ..+.|.|+|++|+||+..+..|.+||||++++. +. +++|+++++|.||+|||+|.|.+...
T Consensus 16 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 93 (153)
T 1w15_A 16 RGELLVSLCYQS--TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93 (153)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS
T ss_pred ccEEEEEEEEcC--CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH
Confidence 577788877764 456999999999999999988999999999994 32 67999999999999999999998643
Q ss_pred --CCceEEEEEEecCCC-CCceeEEEEEEccc
Q 004127 99 --QASVLEVLVKDKDVV-LDDLIGRVMFDLNE 127 (772)
Q Consensus 99 --~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~ 127 (772)
....|.|+|||++.+ +|++||++.+++..
T Consensus 94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp SSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred HhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 347899999999998 89999999999987
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=134.63 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=101.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeec-CCCCCeeccEEEEEeccC--CCceEEEEEEecCCC-CCc
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFE-KKSNPEWNQCFAFSKDRI--QASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~--~~~~L~i~V~d~~~~-~d~ 116 (772)
-|+|+|.+|.||+ |++|||+++.+.+.+++|++++ ++.||+|||.|.|++..+ .++.|.|.|||++++ +++
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr 96 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK 96 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence 4899999999999 5789999999999999999997 799999999999998532 468999999999999 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeec
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQ 167 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (772)
+||++.++|+++..... ...+-+|.+.+++... |+|.+.+.|.+.
T Consensus 97 lIG~~~i~Lq~lv~~~~-----l~l~~~LvD~n~~~~~-a~I~l~l~Y~pp 141 (144)
T 3l9b_A 97 LIGTFRMVLQKVVEENR-----VEVSDTLIDDNNAIIK-TSLSMEVRYQAA 141 (144)
T ss_dssp EEEEEEEESHHHHHHSE-----EEEEEEEECTTSCEEE-EEEEEEEEEEET
T ss_pred EEEEEEEEhHHhccCCe-----EEEeecccCCCCCccc-cEEEEEEEecCC
Confidence 99999999999987632 2356788888877777 999999998763
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=135.08 Aligned_cols=98 Identities=28% Similarity=0.402 Sum_probs=78.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeec-CCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCc
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFE-KKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~ 116 (772)
++.|.|+|++|+++.. .|.+||||++. ++..+|++++ +|.||+|||+|.|.+... ...|.|+|||++ . +|+
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~dd 76 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWDT 76 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SSCEE
T ss_pred ceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CCCCC
Confidence 5799999999998853 57899999999 3444565554 799999999999999864 567999999999 7 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+||++.++|.++..... .....|.++.
T Consensus 77 ~iG~~~i~l~~l~~~~~---~~~~~~~~~~ 103 (131)
T 2cjt_A 77 MVGTVWIPLRTIRQSNE---EGPGEWLTLD 103 (131)
T ss_dssp EEEEEEEEGGGSCBCSS---CCCCEEEECB
T ss_pred eEEEEEEEHHHhhhcCC---CCccccEEcc
Confidence 99999999999875431 1223565554
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=134.60 Aligned_cols=86 Identities=26% Similarity=0.405 Sum_probs=73.9
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeccc-CCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCC
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIV-DSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHG 440 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~ 440 (772)
.+.|.|+|++|++|+. .|.+||||+++ .+..||++++ ++.||+|||+|.|.+.++...|.|+|||+| ++
T Consensus 4 ~~~L~V~V~~A~~l~~------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~- 73 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI- 73 (131)
T ss_dssp CEEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS-
T ss_pred ceEEEEEEEEeECCCC------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC-
Confidence 4799999999998852 36899999999 3345676665 699999999999999988788999999999 65
Q ss_pred CCCCCCCcccEEEEEecCcccc
Q 004127 441 QGGGGKDSRIGKVRIRLSTLET 462 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~ 462 (772)
+|++||++.|+|.++..
T Consensus 74 -----~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 74 -----WDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp -----CEEEEEEEEEEGGGSCB
T ss_pred -----CCCeEEEEEEEHHHhhh
Confidence 89999999999999853
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=130.22 Aligned_cols=119 Identities=15% Similarity=0.236 Sum_probs=103.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeccc-CCCCCeecceEEEEeeC---CCcEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIV-DSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~ 438 (772)
-.|+|.|.+|.||+ |++|||+++.+-+.++||++++ .+.||+|||.|.|++.- ....|.|.|+|++.+
T Consensus 21 msL~V~l~~a~~Lp--------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v 92 (144)
T 3l9b_A 21 MALIVHLKTVSELR--------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92 (144)
T ss_dssp EEEEEEEEEEESCC--------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred EEEEEEEEEecCCC--------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence 37899999999997 4799999999999999999998 59999999999999984 478999999999998
Q ss_pred CCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEeecch
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSL 497 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 497 (772)
+ ++.+||++.++|.++..+.....+-+|.+.+. ....++|.+.++|.|..+
T Consensus 93 ~------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~--~~~~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 93 F------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNN--AIIKTSLSMEVRYQAADG 143 (144)
T ss_dssp S------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTS--CEEEEEEEEEEEEEETTC
T ss_pred c------CCCEEEEEEEEhHHhccCCeEEEeecccCCCC--CccccEEEEEEEecCCCC
Confidence 7 99999999999999987777777788887643 223489999999988543
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=137.19 Aligned_cols=117 Identities=22% Similarity=0.348 Sum_probs=88.6
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeccc-CCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCC
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIV-DSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHG 440 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~ 440 (772)
.+.|.|+|++|++|+. .|.+||||+|+ .+..||++++ ++.||+|||+|.|.+.+....|.|+|||+| ++
T Consensus 13 ~~~L~V~V~~A~~l~~------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~- 82 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI- 82 (167)
T ss_dssp CCEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS-
T ss_pred eEEEEEEEEEEECCCC------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC-
Confidence 5799999999998842 37899999999 3346787776 699999999999999988888999999999 65
Q ss_pred CCCCCCCcccEEEEEecCccccC------ceEeeeEeeeecCCC--Cc--ccccEEEEEEEEe
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETD------RVYTHSYPLLVLHPS--GV--RKMGEVQLAVRFT 493 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~------~~~~~~~~L~~~~~~--g~--~~~G~i~l~~~f~ 493 (772)
+|++||++.|+|.++... .+...||.+.....+ |. ...|.+.++++|.
T Consensus 83 -----~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 83 -----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp -----CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred -----CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 899999999999998542 233455554432211 11 1245577777774
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=136.03 Aligned_cols=119 Identities=21% Similarity=0.256 Sum_probs=87.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeec-CCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCc
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFE-KKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~ 116 (772)
++.|+|+|++|+++. ..|.+||||+++ .+..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++ + +|+
T Consensus 13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~dd 85 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWDT 85 (167)
T ss_dssp CCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSCCE
T ss_pred eEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCCCc
Confidence 679999999999884 257899999999 4455676665 699999999999999864 567999999999 7 999
Q ss_pred eeEEEEEEccccCCCCCCC-CCCCCeEEEeecCCCC------ceeeeEEEEEEEee
Q 004127 117 LIGRVMFDLNEVPKRIPPD-SPLAPQWYRLEDRKGD------KVKTGELMLAVWMG 165 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~------~~~~G~l~l~~~~~ 165 (772)
+||++.|+|.++....... ....+.|+.+..+.|+ ... |.+.+.+.+.
T Consensus 86 ~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~-~~lll~~~~e 140 (167)
T 2cjs_A 86 MVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTF-HRILLDAHFE 140 (167)
T ss_dssp EEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEE-EEEEEEEEEE
T ss_pred eEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEcccc-ceEEEEEEee
Confidence 9999999999987543111 0122345554444332 122 5566666654
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=164.15 Aligned_cols=119 Identities=26% Similarity=0.458 Sum_probs=103.2
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcC
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHI 438 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~ 438 (772)
...|.|.|+|++|+||+.+ |..|.+||||++.+++..++|+++++|+||.|||.|.|.+..+ ...|.|+|||+|.+
T Consensus 384 ~~~~~l~v~v~~a~~L~~~---d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKAC---KPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCC---STTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCC---CCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 4568999999999999987 6779999999999999999999999999999999999999875 46899999999987
Q ss_pred CCCCCCCCCcccEEEEEecCccccCce----EeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRV----YTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+ +|++||.+.+++.++..+.. ...|++|.+. ..|+|++++.+.
T Consensus 461 ~------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 S------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDLQ 507 (510)
T ss_dssp S------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEEE
T ss_pred C------CCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEEE
Confidence 5 89999999999999976543 6789988642 459999888874
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=158.12 Aligned_cols=113 Identities=21% Similarity=0.279 Sum_probs=97.1
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeCCc
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDNGH 437 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~~~ 437 (772)
...|.|.|.|++|+||+. |..|++||||+|.++++.+||+++++++||+|||.|.|.+.+ ..+.|.|+|||+|.
T Consensus 391 ~~~~~L~V~V~~A~~L~~----D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~ 466 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG----DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY 466 (540)
T ss_dssp TTEEEEEEEEEEEESCCC----SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred CcccEEEEEEEEccCCCc----ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence 446899999999999986 566899999999999999999999999999999999998753 57889999999998
Q ss_pred CCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEeec
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCS 495 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 495 (772)
.+ +||+||.+.++|.. | ....|++|. .|.|++.+.+++.
T Consensus 467 ~~------~dD~LG~~~~~L~~---g-~~~~~~~l~---------~G~l~~~~~~~c~ 505 (540)
T 3nsj_A 467 GW------DDDLLGSCDRSPHS---G-FHEVTCELN---------HGRVKFSYHAKCL 505 (540)
T ss_dssp SS------CCEEEEEEEECCCS---E-EEEEEEECS---------SSEEEEEEEEEEC
T ss_pred CC------CCCEEEEEEEEeeC---C-cEEEEEEcC---------CeEEEEEEEEEEC
Confidence 65 88999999999883 3 356777752 3999988888774
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=163.42 Aligned_cols=122 Identities=23% Similarity=0.387 Sum_probs=104.7
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CC
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LD 115 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d 115 (772)
...+.|.|+|++|+||++.|..|.+||||++.+++++.+|+++++|.||+|||+|.|.+..+....|.|+|||.+.+ +|
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~ 463 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD 463 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence 46689999999999999999999999999999999999999999999999999999999877778899999999998 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 116 DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
++||++.+++.++..+..... ....|++|..... |+|.+.+.+
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~-~~~~~~~l~~~~~-----G~i~l~~~l 506 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKG-PMTRRLLLHEVPT-----GEVWVRFDL 506 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHC-SCCEEEECBSSSS-----CEEEEEEEE
T ss_pred CceEEEEEEHHHhccccCCCC-ceeeeecCCCCCC-----ceEEEEEEE
Confidence 999999999999975422111 2568999986532 888888765
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=157.94 Aligned_cols=112 Identities=24% Similarity=0.262 Sum_probs=96.6
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEec-cCCCceEEEEEEecCCC-C
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD-RIQASVLEVLVKDKDVV-L 114 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~~L~i~V~d~~~~-~ 114 (772)
..++.|.|+|++|+||+. |..|.+||||++++++++.||+++++++||+|||+|.|.+. ....+.|+|+|||+|.. +
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~ 469 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD 469 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSC
T ss_pred CcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCC
Confidence 347899999999999998 98999999999999999999999999999999999999864 33578899999999998 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
||+||++.++|.. + . ...|++|.. |+|.+++.+..
T Consensus 470 dD~LG~~~~~L~~---g-----~-~~~~~~l~~--------G~l~~~~~~~c 504 (540)
T 3nsj_A 470 DDLLGSCDRSPHS---G-----F-HEVTCELNH--------GRVKFSYHAKC 504 (540)
T ss_dssp CEEEEEEEECCCS---E-----E-EEEEEECSS--------SEEEEEEEEEE
T ss_pred CCEEEEEEEEeeC---C-----c-EEEEEEcCC--------eEEEEEEEEEE
Confidence 8999999999872 2 1 457888642 88888887654
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=156.01 Aligned_cols=120 Identities=22% Similarity=0.374 Sum_probs=104.1
Q ss_pred ceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeeecCC-CCCeeccEEEEEeccCCCceEEEEEEe
Q 004127 38 QMQYLYVRVVKAKDLPGKDV--TGSCDPYVEVKLGN-----YKGTTKHFEKK-SNPEWNQCFAFSKDRIQASVLEVLVKD 109 (772)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~-----~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~~L~i~V~d 109 (772)
..+.|.|+|++|++|+..+. .+.+||||+|.+.+ .+.||++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 45799999999999998873 68899999999955 57899999887 999999999999976655789999999
Q ss_pred cCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 110 KDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 110 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
++.+ +|++||++.++|..|..+ .+|++|.+..|.....|.|.+.+.+.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G--------~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCC--------cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 9998 999999999999999654 36999999888765448899888763
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-15 Score=164.94 Aligned_cols=123 Identities=19% Similarity=0.326 Sum_probs=20.9
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCC---CCCeecceEEEEeeCCCcEEEEEEEeC-C
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDS---FGPRWNEQYTWEVFDPCTVITVGVFDN-G 436 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t---~~P~Wne~~~~~v~~~~~~l~i~v~D~-~ 436 (772)
.+.|+|+|++|+||+++ | ||||++.+++. +.||+++++| +||+|||+|.|.+......|.|+|||+ |
T Consensus 10 ~~~L~V~VieAk~L~~~---d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d 81 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPK---K-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSD 81 (483)
T ss_dssp EECC-----------------------------------------------------CCEECC-----------------
T ss_pred ccEEEEEEEEcCCcCCC---C-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCC
Confidence 37899999999999876 3 99999999876 5799999999 999999999999766568899999994 4
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCC---------------------CCcccccEEEEEEEEeec
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP---------------------SGVRKMGEVQLAVRFTCS 495 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~i~l~~~f~~~ 495 (772)
.. .+.++|++||++.|++.++..+....+||+|.+... +|.+..|.|+|+++|++.
T Consensus 82 ~~---~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~ 158 (483)
T 3bxj_A 82 KK---RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM 158 (483)
T ss_dssp ----------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred cc---ccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence 20 001289999999999999998888899999965432 122346999999999763
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=152.19 Aligned_cols=121 Identities=19% Similarity=0.308 Sum_probs=99.6
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCC-CCCeecceEEEEeeCCC-cEEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDS-FGPRWNEQYTWEVFDPC-TVITVGVF 433 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t-~~P~Wne~~~~~v~~~~-~~l~i~v~ 433 (772)
..+.|.|+|++|++|+.++. +..|.+||||+|.+.+ .+.||++++++ .||+|||+|.|.+..+. ..|.|+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~-~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSS-CSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccc-cccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence 45899999999999998731 1367899999999943 67899999997 99999999999998763 68999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcc-cccEEEEEEEEe
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR-KMGEVQLAVRFT 493 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~ 493 (772)
|+|.++ ++++||++.|+|..|..|. +|++|.+.. |.. ..|+|.+.+.|+
T Consensus 574 D~D~~~------~dd~iG~~~ipl~~L~~G~---r~v~L~d~~--g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 574 DYDSSS------KNDFIGQSTIPWNSLKQGY---RHVHLLSKN--GDQHPSATLFVKISIQ 623 (624)
T ss_dssp ECCSSS------CCEEEEEEEEEGGGBCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EcCCCC------CCceeEEEEEEHHHcCCCc---EEEeCCCCC--cCCCCceEEEEEEEEE
Confidence 999875 8999999999999998763 689998753 332 347777777763
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-13 Score=154.46 Aligned_cols=107 Identities=26% Similarity=0.450 Sum_probs=95.0
Q ss_pred CceeEEEEEEEEeecCCC---CCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEec
Q 004127 37 EQMQYLYVRVVKAKDLPG---KDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDK 110 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~---~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~ 110 (772)
.+.+.|.|+|++|++|+. .|..|.+||||++++++ .++||++++++.||+|||+|.|.+.......|.|+|||+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~ 94 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA 94 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence 457899999999999998 77788999999999995 678999999999999999999999876678999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 111 DVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 111 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+.+.|++||++.++|.++..+. ....|++|.+.
T Consensus 95 D~~~ddfIG~v~I~L~~L~~g~-----~~~~w~~L~~~ 127 (749)
T 1cjy_A 95 NYVMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV 127 (749)
T ss_dssp CSSSCEEEEEECCBSTTSCTTC-----CCCEEEEETTT
T ss_pred CCCCCceeEEEEEEHHHcCCCC-----ceEEEEecCCC
Confidence 9878999999999999996553 25689999754
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-13 Score=154.65 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=93.5
Q ss_pred CCccEEEEEEEEecCCCC---CccCCCCCCcCcEEEEEECC---EEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEE
Q 004127 360 PSIGILELGVLSAHGLTP---MKTKDGRGTTDAYCVAKYGQ---KWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGV 432 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~---~~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v 432 (772)
.+.+.|.|+|++|++|+. + |..|++||||+|++++ ..+||+++++++||+|||+|.|.+.. ....|.|+|
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~---D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V 91 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFG---DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL 91 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHH---HHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEE
T ss_pred CCccEEEEEEEEEECCCCcccc---CCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEE
Confidence 455899999999999998 6 5568899999999974 67999999999999999999999987 467899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
||+|.+ .|++||++.|++.++..+....+|++|..
T Consensus 92 ~D~D~~-------~ddfIG~v~I~L~~L~~g~~~~~w~~L~~ 126 (749)
T 1cjy_A 92 MDANYV-------MDETLGTATFTVSSMKVGEKKEVPFIFNQ 126 (749)
T ss_dssp EECCSS-------SCEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred EECCCC-------CCceeEEEEEEHHHcCCCCceEEEEecCC
Confidence 999975 38999999999999988887889999953
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.4e-13 Score=147.37 Aligned_cols=100 Identities=20% Similarity=0.339 Sum_probs=13.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCC---CCCeeccEEEEEeccCCCceEEEEEEec-C--
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKK---SNPEWNQCFAFSKDRIQASVLEVLVKDK-D-- 111 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t---~nP~Wne~f~f~v~~~~~~~L~i~V~d~-~-- 111 (772)
.+.|+|+|++|+||+++| ||||+++++++ ..||+++++| .||+|||+|.|.+... ...|.|+|||. +
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCCcc
Confidence 468999999999999876 99999999985 6799999999 9999999999997543 58899999995 4
Q ss_pred -CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 112 -VV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 112 -~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
.. +|++||.+.|++.++..+. ...+||+|..+.
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~-----~~~~W~~L~~~~ 118 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRH-----FTEQWYPVTLPT 118 (483)
T ss_dssp ----------------------------CCEECC------
T ss_pred ccCCCCceEEEEEEEHHHhcCCC-----CCCeEEECCCCC
Confidence 24 8999999999999997653 357899996543
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=135.08 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=94.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecC-CCCCeecc-EEEEE-eccCCCceEEEEEEec
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTKHFEK-KSNPEWNQ-CFAFS-KDRIQASVLEVLVKDK 110 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~-t~nP~Wne-~f~f~-v~~~~~~~L~i~V~d~ 110 (772)
..|.|+|++|++|+.. .+||||+|.+.+ .++||+++++ +.||+||| +|.|. +..+....|+|+|||+
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 3799999999999853 689999999975 3579999975 59999999 69998 6555557899999998
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 111 DVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 111 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
+ +++||++.++|..|..+ .++++|.+..|.....|+|.+.+.+..
T Consensus 801 d---ddfiG~~~lpL~~L~~G--------yR~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 801 G---GKFVGHRILPVSAIRSG--------YHYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp T---TEEEEEEEEETTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred C---ccEEeeEEEEHHHcCCC--------ceEEEecCCCCCccCceEEEEEEEEEe
Confidence 7 89999999999998654 367899999888754599999998864
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=133.13 Aligned_cols=112 Identities=18% Similarity=0.297 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeecC-CCCCeeccE-EEEE-eccCCCceEEEEEEe
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------YKGTTKHFEK-KSNPEWNQC-FAFS-KDRIQASVLEVLVKD 109 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~-t~nP~Wne~-f~f~-v~~~~~~~L~i~V~d 109 (772)
+.|.|+|++|++|+.. .+||||+|.+.+ .++||+++++ +.||+|||+ |.|. +..+.-..|+|+|||
T Consensus 650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D 725 (816)
T 3qr0_A 650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725 (816)
T ss_dssp EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence 6899999999999853 689999999976 4679999975 699999998 9998 755545789999999
Q ss_pred cCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 110 KDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 110 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
++ +++||++.++|..|..+ .++++|.+..|+....++|.+.+.+..
T Consensus 726 ~d---ddfiG~~~ipL~~L~~G--------yR~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 726 EN---GKFIGHRVMPLDGIKPG--------YRHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp TT---SCEEEEEEEESTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred cC---CCeeeEEEEEHHHcCCc--------ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 85 78999999999999754 368899999888765599999998764
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=132.86 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=92.0
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeee-eecC-CCCCeecc-EEEE-EeccCCCceEEEEEE
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTK-HFEK-KSNPEWNQ-CFAF-SKDRIQASVLEVLVK 108 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~-~~~~-t~nP~Wne-~f~f-~v~~~~~~~L~i~V~ 108 (772)
.+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++ +.||+||| +|.| .+..+.-..|+|+||
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~ 752 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 752 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence 4689999999999985 4689999999953 357899 8864 68999999 7999 776554568999999
Q ss_pred ecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 109 DKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 109 d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|++ +++||.+.++|..|..+ .+|++|.+..|.....+.|.+.+.+
T Consensus 753 D~d---~d~iG~~~ipl~~L~~G--------~r~v~L~~~~g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 753 EEG---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 797 (799)
T ss_dssp ETT---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EeC---CCccceEeeehhhcCCC--------cEEEeccCCCCCCCCceEEEEEEEE
Confidence 986 89999999999999643 4689999888876555888888866
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-11 Score=137.87 Aligned_cols=105 Identities=33% Similarity=0.548 Sum_probs=91.8
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeecCCCCCeeccEEEEEeccC-CCceEEEEEEecCC
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAFSKDRI-QASVLEVLVKDKDV 112 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~L~i~V~d~~~ 112 (772)
.+.|.|+|++|++|.+.|..|.+||||++++ ...+.+|++++++.||+|||+|.|.+... ....|.|+|||.+.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 4689999999999999999999999999999 33578999999999999999999998542 34569999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 113 V-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
. +|++||++.+++.++.... ...|+.|....
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~------~~~w~~Lls~~ 282 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 282 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC------EEEEEECBCTT
T ss_pred ccccccccccccchhhhccCC------cccceeecccc
Confidence 9 9999999999999997542 47899998764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.7e-11 Score=136.94 Aligned_cols=103 Identities=25% Similarity=0.438 Sum_probs=91.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~ 435 (772)
+.|.|.|++|++|..+ |..|.+||||++.+ +..+.||+++++|+||+|||.|.|.+.. ....|.|+|||+
T Consensus 172 ~~L~V~v~~a~~L~~~---d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~ 248 (674)
T 3pfq_A 172 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDW 248 (674)
T ss_dssp SEEEEEEEEEESCCCC---STTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred ceeeeeeecccccCCC---CcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeec
Confidence 6899999999999998 77799999999998 4456899999999999999999999874 356799999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|.++ +|++||.+.++++++.... ...|++|.+.
T Consensus 249 d~~~------~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 249 DLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp CSSS------CCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cccc------ccccccccccchhhhccCC-cccceeeccc
Confidence 9876 8999999999999997765 4899999764
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=126.36 Aligned_cols=111 Identities=19% Similarity=0.293 Sum_probs=88.0
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-------EEEEeecccC-CCCCeecce-EEEE-eeCC-CcEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-------KWVRTRTIVD-SFGPRWNEQ-YTWE-VFDP-CTVITV 430 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-------~~~~T~~~~~-t~~P~Wne~-~~~~-v~~~-~~~l~i 430 (772)
.+.|.|+|++|++|+. ..+||||+|.+.+ +++||+++++ +.||+|||+ |.|. |..+ ...|+|
T Consensus 649 ~~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf 721 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD-------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRI 721 (816)
T ss_dssp CEEEEEEEEEEECCCS-------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEE
T ss_pred ceEEEEEEEEcccCCC-------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEE
Confidence 3789999999999974 2589999999854 5789999986 699999998 9998 7654 468999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+|||++ +++||++.++|+.|..| -++.||.+...... ..++|.+.+.+.
T Consensus 722 ~V~D~d----------ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~-~~atLfv~i~~~ 770 (816)
T 3qr0_A 722 IVSEEN----------GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPL-GLASVFAHIVAK 770 (816)
T ss_dssp EEEETT----------SCEEEEEEEESTTCCCE---EEEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred EEEecC----------CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCC-CceEEEEEEEEE
Confidence 999963 58999999999999887 35789987532221 236777777664
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.5e-10 Score=128.25 Aligned_cols=123 Identities=18% Similarity=0.257 Sum_probs=92.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC------EEEEeecccC-CCCCeecc-eEEEE-eeCC-CcEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIVD-SFGPRWNE-QYTWE-VFDP-CTVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~-t~~P~Wne-~~~~~-v~~~-~~~l~i~v 432 (772)
..|.|+|++|++|+. ..+||||+|.+.+ .++||+++++ +.||+||| .|.|. |..+ ...|.|+|
T Consensus 725 ~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V 797 (885)
T 3ohm_B 725 NALRVKVISGQFLSD-------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA 797 (885)
T ss_dssp EEEEEEEEEEESCCS-------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred eEEEEEEEEeccCcc-------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEE
Confidence 479999999999974 2589999999854 2479999986 59999999 69998 6554 46899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe---ecchhHHhhhccC
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT---CSSLINMLHMYSQ 506 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~---~~~~~~~~~~~~~ 506 (772)
||+| +++||++.|+|..|..| -++.||.+...... ..|+|.+.+.+. |...-.++.+...
T Consensus 798 ~D~d----------ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l-~~atLfv~i~~~~~~~~~~~~~~~~l~~ 860 (885)
T 3ohm_B 798 FEEG----------GKFVGHRILPVSAIRSG---YHYVCLRNEANQPL-CLPALLIYTEASDYIPDDHQDYAEALIN 860 (885)
T ss_dssp EETT----------TEEEEEEEEETTTCCCE---EEEEEEECTTSCEE-EEEEEEEEEEEEECCCGGGHHHHHHHHC
T ss_pred EcCC----------ccEEeeEEEEHHHcCCC---ceEEEecCCCCCcc-CceEEEEEEEEEecCCccHHHHHHHHhC
Confidence 9964 58999999999999876 35688877532221 357888888775 3333344444443
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-09 Score=121.43 Aligned_cols=97 Identities=24% Similarity=0.371 Sum_probs=80.7
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC------eeeeec-cccCCCCCCceec-eeEE-EeeCCCCCcEEEEE
Q 004127 200 KLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN------QASRTR-ISPSKTINPMWNE-DLMF-VAAEPFEEPLILTV 270 (772)
Q Consensus 200 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~------~~~kT~-~~~~~t~nP~wne-~f~f-~~~~~~~~~l~i~V 270 (772)
..+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++++.||.||| .|.| .+..+....|+|.|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 35689999999999985 4689999999943 367899 8876479999999 6999 88766667899999
Q ss_pred EEccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004127 271 EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311 (772)
Q Consensus 271 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 311 (772)
||++ +++||++.++|..|.. ..+|++|...
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~-------G~r~v~L~~~ 781 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNS-------GYHHLCLHSE 781 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCC-------EEEEEEEECT
T ss_pred EEeC----CCccceEeeehhhcCC-------CcEEEeccCC
Confidence 9985 7899999999999863 4578888764
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-08 Score=87.74 Aligned_cols=114 Identities=15% Similarity=0.274 Sum_probs=86.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----eeee-eeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCC
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY----KGTT-KHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVL 114 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~----~~kT-~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~ 114 (772)
..|||.+.++.--+........||||.+.+... ..+| ...++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT--
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC--
Confidence 478998877764333233457899999999863 3366 777889999999999999887 6899999997654
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
++++.+++.+.+|..+-.........|++|++. |+|.+.+.+.
T Consensus 82 -~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~-------Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 -EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-------AKVLMSVQYF 124 (126)
T ss_dssp -EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-------CEEEEEEEEE
T ss_pred -CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEEe
Confidence 899999999999984410001235789999885 8998888663
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-08 Score=87.88 Aligned_cols=114 Identities=19% Similarity=0.406 Sum_probs=88.0
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe----eeee-eeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC
Q 004127 40 QYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGNY----KGTT-KHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~~----~~kT-~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
+.|||.+.++.--+... .....||||.|.+... ..+| ..+++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 86 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV- 86 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC-
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC-
Confidence 47899998876544332 2346899999999863 3677 677889999999999999887 6899999997654
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
+|++.+++.+.+|..+-.........|++|++. |+|.+.+.+.
T Consensus 87 --~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~-------Gkl~v~i~~~ 129 (138)
T 2enj_A 87 --DLISETTVELYSLAERCRKNNGKTEIWLELKPQ-------GRMLMNARYF 129 (138)
T ss_dssp --SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS-------CEEEEEEEEC
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEEE
Confidence 899999999999984400001235789999885 9999998774
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-07 Score=78.87 Aligned_cols=108 Identities=14% Similarity=0.254 Sum_probs=82.2
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE----EEe-ecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCc
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW----VRT-RTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGH 437 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~----~~T-~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~ 437 (772)
+.|+|.+.++.--..+ ......||||.|.++... .+| .+.++|..|.|||+|.-.|.+ ...|.|.||+.
T Consensus 6 ~flRi~~~~~~~~~~~---~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~-- 79 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQ---AEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRA-- 79 (126)
T ss_dssp CEEEEEEEEEECSSCC---CSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEE--
T ss_pred ccEEeeeccccccccC---CccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcC--
Confidence 5677777665532211 112358999999886544 366 778889999999999998764 67799999963
Q ss_pred CCCCCCCCCCcccEEEEEecCccc-----cCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
..++++.+.|++.+|. .+...+.|..|.. .|+|++.+++
T Consensus 80 --------a~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--------~Gkl~~~i~~ 123 (126)
T 1yrk_A 80 --------AEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--------QAKVLMSVQY 123 (126)
T ss_dssp --------TTEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--------SCEEEEEEEE
T ss_pred --------CCCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--------CcEEEEEEEE
Confidence 3389999999999995 4567889999874 4999999886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-07 Score=79.92 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=83.3
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE----EEe-ecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCc
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW----VRT-RTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGH 437 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~----~~T-~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~ 437 (772)
+.|+|.+.++.-.+.+. -.....||||.|.+.... .+| .+.++|..|.|||+|.-.|.+ ...|.|.||+.
T Consensus 10 ~flRi~l~~~~~~~~~~--~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~-- 84 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQS--CQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGK-- 84 (138)
T ss_dssp CCEEEEEEEEECCCCCC--SCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECS--
T ss_pred cceEEEeeccccCCCCC--cccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcC--
Confidence 57788776665433220 012359999999886542 677 677789999999999988764 67799999953
Q ss_pred CCCCCCCCCCcccEEEEEecCccc-----cCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
..++++.+.|++.+|. .+...+.|..|.. .|+|++.+++
T Consensus 85 --------a~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--------~Gkl~v~i~~ 128 (138)
T 2enj_A 85 --------NVDLISETTVELYSLAERCRKNNGKTEIWLELKP--------QGRMLMNARY 128 (138)
T ss_dssp --------SCSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--------SCEEEEEEEE
T ss_pred --------CCCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--------CcEEEEEEEE
Confidence 3389999999999996 4567789999874 4999999988
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=0.28 Score=44.21 Aligned_cols=130 Identities=15% Similarity=0.084 Sum_probs=87.6
Q ss_pred eecCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEE--CC-eeeeeeeecCCCCCeeccEEEEEecc-------CCC
Q 004127 32 TYDLVEQMQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKL--GN-YKGTTKHFEKKSNPEWNQCFAFSKDR-------IQA 100 (772)
Q Consensus 32 ~~~~~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~--~~-~~~kT~~~~~t~nP~Wne~f~f~v~~-------~~~ 100 (772)
...+.+.-+.+.|+|.++.=-+..- ..+..+|..-+.+ -+ +...|.++. +.+|.+|-+-.|.+.. +.+
T Consensus 10 ~~~l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~ 88 (156)
T 2yrb_A 10 TIHLERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQK 88 (156)
T ss_dssp CSSCCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHH
T ss_pred hhhccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhc
Confidence 3456677789999999986322110 0233467555444 45 455666555 8899999999988742 134
Q ss_pred ceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEeeec
Q 004127 101 SVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWMGTQ 167 (772)
Q Consensus 101 ~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~~ 167 (772)
..+.++++......-+.||.+.|+|.++..+.. ....-.+|....|. .. .|.|...+.+...
T Consensus 89 ~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~----~i~g~~~L~g~~g~~~~-~G~LeywiRL~~P 151 (156)
T 2yrb_A 89 NTITLEVHQAYSTEYETIAACQLKFHEILEKSG----RIFCTASLIGTKGDIPN-FGTVEYWFRLRVS 151 (156)
T ss_dssp CCEEEEEEEECSSCEEEEEEEEECCSHHHHCCS----CEEEEEEECBSSSCCTT-SEEEEEEEEEEEC
T ss_pred CCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCC----ceEEEEEEEcCCCCcce-EEEEEEEEEEecc
Confidence 689999988754467799999999999986532 13345578877663 22 3999988877654
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.61 E-value=5.5 Score=38.03 Aligned_cols=40 Identities=10% Similarity=0.235 Sum_probs=32.9
Q ss_pred eeeeeeecCCCCCeeccEEEEEec--cCCCceEEEEEEecCC
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKD--RIQASVLEVLVKDKDV 112 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~L~i~V~d~~~ 112 (772)
..+|.+...+.+|.|+|++.+.+. ......|.|++++...
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 467888899999999999999884 3356889999998764
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=85.42 E-value=4.5 Score=48.17 Aligned_cols=91 Identities=20% Similarity=0.327 Sum_probs=61.4
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v 432 (772)
..++|+|+.+.++... .....+-||.+.+ |++. .+|+.+. ..+|.|||-++|++. + | ...|.|.|
T Consensus 355 ~~f~v~i~~~~~~n~~----~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl 429 (1091)
T 3hhm_A 355 SALRIKILCATYVNVN----IRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSI 429 (1091)
T ss_dssp SEEEEEEEEESCCCCC----CSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred CCEEEEEEEecCCCCC----ccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEE
Confidence 5899999999988642 2234677888766 6543 3444333 567889998888876 4 3 68999999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
|+.....+ ..+.+..||.+.++|-+-
T Consensus 430 ~~~~~~~~--~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 430 CSVKGRKG--AKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp CCCCCCC---------CCEEEEEESBCT
T ss_pred EEecCccC--cccccceeEEeeeeeEcc
Confidence 99764211 112456899999999875
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=85.11 E-value=4.1 Score=48.08 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=49.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeecCCCCCeeccEEEEEe---ccCCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNY----KGTTKHFEKKSNPEWNQCFAFSK---DRIQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v---~~~~~~~L~i~V~d~~ 111 (772)
.++|+|..+.++... ...+-||.+.+ |++ ..+|+.+....+|.|||.+.|++ .-+.+..|.|+||+..
T Consensus 218 ~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 218 PFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVV 294 (940)
T ss_dssp EEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred ceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEec
Confidence 799999999998754 34577877655 553 34566565577899999999987 2345788999999963
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=85.00 E-value=3.5 Score=37.10 Aligned_cols=125 Identities=12% Similarity=0.182 Sum_probs=80.1
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcE--EEEEECCE-EEEeecccCCCCCeecceEEEEeeCC--------CcE
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAY--CVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDP--------CTV 427 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpy--v~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~--------~~~ 427 (772)
.+..+.+.|+|.++. +.+. .....+..+|. |.+.+-.. ..-|.++ ...+|.+|-+..|.|.-. ...
T Consensus 14 ~~gEnlfEihi~~~~-~~~~-~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~-~G~~p~y~fts~Y~V~~d~~fl~yL~~~~ 90 (156)
T 2yrb_A 14 ERGENLFEIHINKVT-FSSE-VLQASGDKEPVTFCTYAFYDFELQTTPVV-RGLHPEYNFTSQYLVHVNDLFLQYIQKNT 90 (156)
T ss_dssp CSSCEEEEEEEEEEC-CCHH-HHHHHCSSCCEEEEEECSTTCCCEECCCE-ESSSCCCCEEEEEEECCSHHHHHHHHHCC
T ss_pred cCCCcEEEEEEeEEE-EcHH-HHhhccccCCcEEEEEEEeceEeeecccc-cCCCCCcceEEEEEEEeCHHHHHHHhcCC
Confidence 344578999998887 3221 00111234555 45544444 4555555 488999999988888622 246
Q ss_pred EEEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc-CceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 428 ITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET-DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 428 l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+.+++..... +..+.||.++|++.++.. ...+....+|.+... +....|.|...+++..
T Consensus 91 l~lELhqa~g-------~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g-~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 91 ITLEVHQAYS-------TEYETIAACQLKFHEILEKSGRIFCTASLIGTKG-DIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEEECS-------SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSS-CCTTSEEEEEEEEEEE
T ss_pred EEEEEEEeeC-------CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCC-CcceEEEEEEEEEEec
Confidence 8888888642 256789999999999863 334556667776422 1135799998888754
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=82.92 E-value=5.4 Score=47.10 Aligned_cols=92 Identities=11% Similarity=0.204 Sum_probs=62.3
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v 432 (772)
..++|.|..+.++... ..++-||.+.+ |++. ..|..+.-..+|.|||-++|++. + | ...|.|.|
T Consensus 217 ~~f~i~i~~~~~~~~~------~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti 290 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD------ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFAL 290 (940)
T ss_dssp SEEEEEEEEEECCCC---------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred CceEEEEEEecccCCC------CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEE
Confidence 5899999999998642 34677877654 7764 45555555778999999888876 3 3 67899999
Q ss_pred EeCCcC--C---CCC-CCCCCcccEEEEEecCcc
Q 004127 433 FDNGHI--H---GQG-GGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 433 ~D~~~~--~---~~~-~~~~~~~lG~~~i~l~~l 460 (772)
|+.... + .+. ....+..||.+.+++-+-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp EEEC----------------CEEEEEEEEESBCT
T ss_pred EEecCCccCccccccccccccceEEEEeeeEECC
Confidence 996421 1 000 011356999999999875
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=80.21 E-value=7.4 Score=46.33 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=57.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeecCCCCCeeccEEEEEe---ccCCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNY----KGTTKHFEKKSNPEWNQCFAFSK---DRIQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v---~~~~~~~L~i~V~d~~ 111 (772)
.++|+|..+.++.... ....+-||.+.+ |++ ..+|+.+. ..+|.|||.+.|++ .-+....|.|.||+..
T Consensus 356 ~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~ 433 (1091)
T 3hhm_A 356 ALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSVK 433 (1091)
T ss_dssp EEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCC
T ss_pred CEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEec
Confidence 7899999999886433 334677888776 443 34454443 56888999999987 2345789999999865
Q ss_pred CC-----CCceeEEEEEEcccc
Q 004127 112 VV-----LDDLIGRVMFDLNEV 128 (772)
Q Consensus 112 ~~-----~d~~lG~~~i~l~~l 128 (772)
.. ....||.+.++|-+.
T Consensus 434 ~~~~~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 434 GRKGAKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp CCC-------CCEEEEEESBCT
T ss_pred CccCcccccceeEEeeeeeEcc
Confidence 42 123566666666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 772 | ||||
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-22 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-12 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-09 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 6e-22 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-08 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-20 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 7e-14 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 7e-12 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-20 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-12 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-08 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-19 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 7e-09 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 5e-08 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 6e-19 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-13 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 7e-13 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-18 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 7e-13 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-06 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 3e-18 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 3e-10 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 2e-08 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 8e-18 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-11 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 9e-10 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-17 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-15 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-13 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-17 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-11 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-04 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 9e-15 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 5e-11 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-04 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 1e-14 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 2e-07 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 5e-05 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 5e-14 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-05 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-13 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-06 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 3e-04 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-12 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 1e-12 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 7e-10 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 1e-06 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 4e-12 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-09 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-08 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 2e-10 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 2e-06 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 6e-05 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 5e-07 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 2e-04 |
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 91.3 bits (226), Expect = 2e-22
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI 98
M L V V KAK ++ + YV +K+ N K TT + S P W Q F F +R+
Sbjct: 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 99 QASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR--------KG 150
+ V V +K ++ D ++G V L + + + +W L+ + G
Sbjct: 57 DLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQAIMADSEICG 112
Query: 151 DKVKTGELMLA 161
K T +L
Sbjct: 113 TKDPTFHRILL 123
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.5 bits (151), Expect = 2e-12
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 12/133 (9%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
+ V + +A+ +K +V + N S T + P W +D
Sbjct: 3 LLCVGVKKAKFDGAQEKF---NTYVTLKVQNVKSTTIAV--RGSQPSWEQD-FMFEINRL 56
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIV-DGEKKET 321
+ L + V ++ D ++G IPL+ + R ++ W L+ I+ D E T
Sbjct: 57 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTI--RQSNEEGPGEWLTLDSQAIMADSEICGT 113
Query: 322 K--FSSRIHLRIC 332
K RI L
Sbjct: 114 KDPTFHRILLDAH 126
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.1 bits (132), Expect = 1e-09
Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 21/145 (14%)
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEV 421
+ +L +GV A + Y K T V P W + + +E+
Sbjct: 1 MSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTI-AVRGSQPSWEQDFMFEI 53
Query: 422 FDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL--ETDRVYTHSYPLLVLHPSG 479
+TV V++ G I D+ +G V I L T+ + L
Sbjct: 54 NRLDLGLTVEVWNKGLI-------WDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDSQA 103
Query: 480 VRKMGEVQLAVRFTCSSLINMLHMY 504
+ E+ T + +L +
Sbjct: 104 IMADSEICGTKDPTFHRI--LLDAH 126
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.8 bits (222), Expect = 6e-22
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSK 95
V+ + L V+V+KA DL D +G DP+ ++LGN + T K NPEWN+ F F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 96 DRIQASVLEVLVKDKD-VVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVK 154
I VLEV V D+D D +G+V L + P Y L+++ ++
Sbjct: 62 KDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAF 113
Query: 155 TGELMLAV 162
G + L +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 2e-08
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
++V +++A DLL +D S + F LGN +T K +NP WN+ F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT-VYKNLNPEWNKVFTFPIKDIH 65
Query: 263 EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETK 322
+ +TV D + LGK IPL +++ + + L+ + E
Sbjct: 66 DVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPN------CYVLKN------KDLEQA 112
Query: 323 FSSRIHLRI 331
F I+L +
Sbjct: 113 FKGVIYLEM 121
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.9 bits (212), Expect = 2e-20
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKK 82
+ +D + L V ++ AKDLP ++ +PYV++ K TK +K
Sbjct: 4 SIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 61
Query: 83 SNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVL---DDLIGRVMFDLNEVPKRIPPDS 136
P+WNQ F + + + +LE+ + D+ V + +G ++ +L
Sbjct: 62 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LL 115
Query: 137 PLAPQWYRLE 146
P WY+L+
Sbjct: 116 DDEPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.7 bits (162), Expect = 7e-14
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 200 KLWY------VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTI----NPM 249
KLW+ + V I+ A+DL + R +VK S +KT+ P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65
Query: 250 WNEDLMFVAAEPFEEP---LILTV--EDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTR 304
WN+ ++ E L +T+ + RV + E LG+ LI L+
Sbjct: 66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE----TALLDDE-PH 120
Query: 305 WFNLE 309
W+ L+
Sbjct: 121 WYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (147), Expect = 7e-12
Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 17/122 (13%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIVDSFGPRWN 414
L + +L A L + + Y + + RT+T+ + P+WN
Sbjct: 11 KVGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWN 67
Query: 415 EQYTWEVFDPCT----VITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSY 470
+ + + ++ + ++D + + +G++ I L T D H Y
Sbjct: 68 QTFIYSPVHRREFRERMLEITLWD----QARVREEESEFLGEILIELETALLDDE-PHWY 122
Query: 471 PL 472
L
Sbjct: 123 KL 124
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.2 bits (210), Expect = 2e-20
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 42 LYVRVVKAKDLP---GKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSK 95
V V++A + D+ + DPYVE+ + + + T+HF NP WN+ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 96 DRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVK 154
D Q +VLE+ + D + V+D+ +G F ++ + + + ++
Sbjct: 65 DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVTEMVLE 118
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (150), Expect = 3e-12
Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 20/141 (14%)
Query: 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQY 417
S + VL A +T D T D Y RTR + P WNE +
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 418 TWEVFDPCT-VITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLH 476
+ + V+ + + D + D +G +S+++ +
Sbjct: 61 EFILDPNQENVLEITLMDANY-------VMDETLGTATFTVSSMKVGEKKEVPFIF---- 109
Query: 477 PSGVRKMGEVQLAVRFT-CSS 496
++ E+ L + SS
Sbjct: 110 ----NQVTEMVLEMSLEVASS 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 2e-08
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 10/112 (8%)
Query: 204 VRVNIIEAQDLLP---SDKSRFPEVFVKAILGNQASRTRIS--PSKTINPMWNEDLMFVA 258
V ++ A + D P+ +V+ + + + + INP+WNE F+
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 259 AEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEK 310
E L +T+ D DE LG + + F +
Sbjct: 65 DPNQENVLEITLMDA-NYVMDETLGTATFTV----SSMKVGEKKEVPFIFNQ 111
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.2 bits (207), Expect = 1e-19
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Query: 20 GAGSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL--------- 69
+ ITG+ +L YD + L + +++A++L +D G DP+V+V L
Sbjct: 1 ASHPITGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMV 56
Query: 70 -----GNYKGTTKHFEKKSNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVL-DDLIGR 120
YK TK+ +K NPEWNQ + S +++ LEV V D D +D +G
Sbjct: 57 VQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116
Query: 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDR 148
V+ DL+ P+WY L+++
Sbjct: 117 VLIDLSSTSHLDN-----TPRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.0 bits (126), Expect = 7e-09
Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 26/141 (18%)
Query: 191 IRSKVYLSPKLWY----VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPS--- 243
I ++ L + Y + ++I++A++L+P D + + + FVK L + + +
Sbjct: 5 ITGEIQLQ--INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASA 62
Query: 244 ----------KTINPMWNEDLMFV---AAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQ 290
K++NP WN+ +++ + ++ L +TV D + ++ LG+ LI L
Sbjct: 63 EYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
Query: 291 AVQRRLDHKPVNTRWFNLEKH 311
+ + RW+ L++
Sbjct: 123 STSHLDNT----PRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.3 bits (119), Expect = 5e-08
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 19/127 (14%)
Query: 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCV--------------AKYGQKWVRTRTIV 406
+G L + +L A L P D G +D + + RT+ +
Sbjct: 16 DLGNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 407 DSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVY 466
S P WN+ ++ ++ + + + +G+V I LS+
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTL--EVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT 130
Query: 467 THSYPLL 473
YPL
Sbjct: 131 PRWYPLK 137
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.3 bits (200), Expect = 6e-19
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG-----TTKHFEKKSNPEWNQCFAFS 94
+ L V V AK+L D G DPYV++KL TK + NPEWN+ F F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 95 -KDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149
K+ + L V + D D+ +D +G + F ++E+ K W++L ++
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 125
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.3 bits (156), Expect = 5e-13
Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 192 RSKVYLSPKLW--YVRVNIIEAQDLLPSDKSRFPEVFVKAIL-----GNQASRTRISPSK 244
R ++Y+ + + V + +A++L+P D + + +VK L +T+
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-C 61
Query: 245 TINPMWNEDLMFVAAEPFEE-PLILTVEDRVAPNKDEVLGKCLIPLQAVQR-RLDHKPVN 302
++NP WNE F E ++ L + + D ++++ +G + +Q+ +D
Sbjct: 62 SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG---- 117
Query: 303 TRWFNLEKHVIVDGEK 318
WF L +GE
Sbjct: 118 --WFKLLSQ--EEGEY 129
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.9 bits (155), Expect = 7e-13
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQY 417
+L + V A L PM D G +D Y K + +T+TI S P WNE +
Sbjct: 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71
Query: 418 TWEVFDP--CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473
+++ + ++V ++D ++ +G + +S L+ V + LL
Sbjct: 72 RFQLKESDKDRRLSVEIWDWDLT------SRNDFMGSLSFGISELQKAGV-DGWFKLL 122
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 80.1 bits (197), Expect = 2e-18
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 19/136 (13%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKK 82
+S Y L V V+KA+ LP DV+G DPYV+V L + K T +
Sbjct: 5 LVSLCYQ--STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCT 62
Query: 83 SNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIP------ 133
N +N+ F F + ++ +E LV D + +++IGR++
Sbjct: 63 PNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEIC 122
Query: 134 --PDSPLAPQWYRLED 147
P +A +W+ L D
Sbjct: 123 DFPRRQIA-KWHMLCD 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.3 bits (156), Expect = 7e-13
Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 192 RSKVYLSPKLWY------VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA-----SRTRI 240
R ++ +S L Y + V +++A+ L SD S + +VK L + +T +
Sbjct: 1 RGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV 58
Query: 241 SPSKTINPMWNEDLMF--VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH 298
T N ++NE +F E + V D +++EV+G+ ++ A H
Sbjct: 59 KK-CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGH 117
Query: 299 ---------KPVNTRWFNL 308
+ + +W L
Sbjct: 118 WKEICDFPRRQI-AKWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.6 bits (110), Expect = 1e-06
Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 19/122 (15%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW-----VRTRTIVDSFGPRWN 414
+ L + VL A L D G +D Y +T + +N
Sbjct: 12 STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 68
Query: 415 EQYTWEVFDP---CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYP 471
E + +++ + V D+ ++ IG++ + + H
Sbjct: 69 ELFVFDIPCESLEEISVEFLVLDSERG------SRNEVIGRLVLGAT--AEGSGGGHWKE 120
Query: 472 LL 473
+
Sbjct: 121 IC 122
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.4 bits (195), Expect = 3e-18
Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 1/121 (0%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQAS 101
L + V+ AK K PYVEV + T+ ++P+W Q +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 102 VLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLA 161
V + D L+G D+ E K +L K G+L +
Sbjct: 68 HFRVWSHQT-LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSIC 126
Query: 162 V 162
+
Sbjct: 127 L 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 3e-10
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 10/132 (7%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFE 263
+++ +I A+ P +V+ + Q+ +T + +P W + L +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTN-SPKWKQPLTVIV--TPV 64
Query: 264 EPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKF 323
L V D +LG + + + + K L+ G+K+ T+
Sbjct: 65 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEV-VVTLQLG----GDKEPTE- 118
Query: 324 SSRIHLRICLDG 335
+ L ICLDG
Sbjct: 119 -TIGDLSICLDG 129
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 2e-08
Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 14/132 (10%)
Query: 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVF 422
L++ V+SA + K Y + +T ++ P+W + T V
Sbjct: 6 SQLQITVISAKLK---ENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 62
Query: 423 DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL---ETDRVYTHSYPLLVLHP-S 478
+ V+ + + D +G + + ++ L +
Sbjct: 63 PVSK-LHFRVWSHQTL------KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE 115
Query: 479 GVRKMGEVQLAV 490
+G++ + +
Sbjct: 116 PTETIGDLSICL 127
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 78.6 bits (193), Expect = 8e-18
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSN 84
+ S YD Q L V +++A +LP D+ G+ DPYV+V L K TK K N
Sbjct: 24 QYSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 85 PEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQ 141
P +N+ F F + L + V D D D+IG +N V + +
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-----DFGHVTEE 136
Query: 142 WYRLE 146
W L+
Sbjct: 137 WRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.2 bits (145), Expect = 2e-11
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYC---VAKYGQKWVRTRTIVDSFGPRWNEQ 416
L +G++ A L + D GT+D Y + +K T+ + P +NEQ
Sbjct: 31 FQNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 87
Query: 417 YTWEVFDPC---TVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473
+T++V + + V+D K IG+ ++ ++T++ V L
Sbjct: 88 FTFKVPYSELGGKTLVMAVYDFDRF------SKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.5 bits (133), Expect = 9e-10
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISP--SKTINPMWNEDLMF--VAA 259
+ V II+A +L D + +VK L + + KT+NP++NE F +
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 260 EPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
E + L++ V D +K +++G+ +P+ +D V W +L+
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDLQ 141
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 77.9 bits (191), Expect = 1e-17
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG-TTKHFEKKSNPEWNQCFAFSKDRIQA 100
L V +V AK L D + DPYV++ + + PEWN+ F F+
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 101 SVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELM 159
+ L+ + DKDV DD +G L V + + P Y + D+ GE+
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFV----EGSIPPTAYNVVK---DEEYKGEIW 123
Query: 160 LAV 162
+A+
Sbjct: 124 VAL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 70.9 bits (173), Expect = 4e-15
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIV-DSFGPRWNEQYTWE 420
G LE+ ++SA GL + D D Y + ++ P WNE + +
Sbjct: 9 HGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 421 VFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGV 480
V + T + +FD + G +D +G+ I L + + + +V
Sbjct: 66 VSEGTTELKAKIFD------KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE--- 116
Query: 481 RKMGEVQLAVRFT 493
GE+ +A+ F
Sbjct: 117 EYKGEIWVALSFK 129
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 65.9 bits (160), Expect = 2e-13
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFE 263
+ V ++ A+ L +D + +V+ Q ++ ++ P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 264 EPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKF 323
L + D+ +D+ +G+ IPL+ V + +N+ K GE
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPV---FVEGSIPPTAYNVVKDEEYKGE------ 121
Query: 324 SSRIHLRIC 332
I + +
Sbjct: 122 ---IWVALS 127
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.8 bits (188), Expect = 5e-17
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG-----TTKHFEKK 82
S Y L V +++AK+L DV G DPYV++ L T +
Sbjct: 15 CFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT 72
Query: 83 SNPEWNQCFAF--SKDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRI------- 132
NP +N+ F+F ++IQ + V V D D + +D IG+V N +
Sbjct: 73 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDML 132
Query: 133 -PPDSPLAPQWYRLEDR-KGDKV 153
P P+A QW+ L+ + D +
Sbjct: 133 ANPRRPIA-QWHTLQVEEEVDAM 154
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.2 bits (145), Expect = 3e-11
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 20/153 (13%)
Query: 184 SGEGVANIRSKVYLS----PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTR 239
G G+ + S P + V I+EA++L D + +VK L R +
Sbjct: 3 GGGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 62
Query: 240 IS----PSKTINPMWNEDLMFV--AAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQ 293
T+NP +NE F + + +++TV D K++ +GK + +
Sbjct: 63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 122
Query: 294 RRLDH---------KPVNTRWFNLEKHVIVDGE 317
L H +P+ +W L+ VD
Sbjct: 123 AELRHWSDMLANPRRPI-AQWHTLQVEEEVDAM 154
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWN 414
P+ G L + +L A +K D G +D Y Q K +T ++ P +N
Sbjct: 22 PTAGKLTVVILEAKN---LKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 415 EQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473
E +++EV V + GK+ IGKV + + T H +L
Sbjct: 79 ESFSFEVPFEQIQKVQVVV---TVLDYDKIGKNDAIGKVFVGYN--STGAELRHWSDML 132
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.9 bits (170), Expect = 9e-15
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKK 82
+S Y Q L V +++ L D G DP+V++ L K T+ +K
Sbjct: 5 LVSLMYS--TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT 62
Query: 83 SNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSPLA 139
NPE+N+ F + + L++ V D D+ +D IG ++ +R+
Sbjct: 63 LNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL------- 115
Query: 140 PQWYRLEDRKGDKV 153
WY K K+
Sbjct: 116 KHWYECLKNKDKKI 129
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.1 bits (142), Expect = 5e-11
Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 16/130 (12%)
Query: 192 RSKVYLS----PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTI- 246
R K+ +S + + V II L D + + + FVK L + ++
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 247 ---NPMWNEDLMF--VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPV 301
NP +NE+ + ++ ++ L ++V D ++ +G C + + A RL H
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKH--- 117
Query: 302 NTRWFNLEKH 311
W+ K+
Sbjct: 118 ---WYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 13/121 (10%)
Query: 358 WKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVA-----KYGQKWVRTRTIVDSFGPR 412
+ G L +G++ L M D G +D + + +T+ + P
Sbjct: 10 YSTQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 413 WNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
+NE++ +++ + + D G + IG ++ H Y
Sbjct: 67 FNEEFFYDI--KHSDLAKKSLDISVWD-YDIGKSNDYIGGCQL--GISAKGERLKHWYEC 121
Query: 473 L 473
L
Sbjct: 122 L 122
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.8 bits (170), Expect = 1e-14
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-----KGTTKHFEKK 82
S Y L V ++KA +L D+TG DPYV+ L + K T +
Sbjct: 10 NFSLCYL--PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT 67
Query: 83 SNPEWNQCFAF--SKDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRI------- 132
NP +N+ F + + ++ L + V D D + +++IG
Sbjct: 68 LNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEM 127
Query: 133 --PPDSPLAPQWYRLEDRK 149
P P+ W++L + K
Sbjct: 128 LANPRKPVE-HWHQLVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPS----KTINPMWNEDL 254
P + V II+A +L D + F + +VKA L ++ R + + T+NP +NE L
Sbjct: 17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEAL 76
Query: 255 MF--VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRR-LDH---------KPVN 302
+F L + V D +EV+G C + +A +H KPV
Sbjct: 77 VFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV- 135
Query: 303 TRWFNL 308
W L
Sbjct: 136 EHWHQL 141
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.7 bits (97), Expect = 5e-05
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 12/119 (10%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWN 414
P+ G+L + ++ A L M D G +D Y A K +T ++ P +N
Sbjct: 17 PTAGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYN 73
Query: 415 EQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473
E ++V G + IG R+ + H +L
Sbjct: 74 EALVFDVAPESVENVGLSIAVVD---YDCIGHNEVIGVCRVGPEAADP-HGREHWAEML 128
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (164), Expect = 5e-14
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 15 TSPKIGAGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTG-SCDPYVEVKL---G 70
+S G G++ S Y+ + + V + +A+ LP D + DPY+++ +
Sbjct: 2 SSGSSGLGTL---FFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK 56
Query: 71 NYKGTTKHFEKKSNPEWNQCFAF---SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLN 126
+K T+ K +P +++ F F +IQ L + D DD+IG V+ L+
Sbjct: 57 KHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLS 116
Query: 127 EVPKRIPPDSPLAPQWYRLEDRKG 150
+ + E G
Sbjct: 117 GI------ELSEGKMLMNREIISG 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (113), Expect = 4e-07
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIVDSFGPRWNEQ 416
+ + A GL M + T+D Y + V+TR + + P ++E
Sbjct: 19 FERKAFVVNIKEARGLPAMD--EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76
Query: 417 YTWEVFDP----CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE 461
+T+ + + +D IG+V I LS +E
Sbjct: 77 FTFYGIPYTQIQELALHFTILSFDRF------SRDDIIGEVLIPLSGIE 119
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 205 RVNIIEAQDLLPSDKSRF-PEVFVKAILGNQASRTRISP--SKTINPMWNEDLMFV---A 258
VNI EA+ L D+ + ++K + + + KT++P ++E F
Sbjct: 25 VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY 84
Query: 259 AEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
+ E L T+ ++D+++G+ LIPL ++ L + N E
Sbjct: 85 TQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE--LSEGKM---LMNRE 130
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.5 bits (161), Expect = 1e-13
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 22 GSITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVE---VKLGNYKGTTK 77
G+ G + Y L VR+++A DLP KD G DPYV+ + K TK
Sbjct: 1 GAPCGRISFALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK 58
Query: 78 HFEKKSNPEWNQCFAF--SKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPP 134
K NP +N+ F F + L V D D DLIG+V+ D PP
Sbjct: 59 VHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP 118
Query: 135 DSPLAPQWYRLED 147
D PL W + +
Sbjct: 119 DRPL---WRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.5 bits (109), Expect = 1e-06
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 185 GEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRIS--P 242
G I + + V I++A DL D + F + +VK L + +
Sbjct: 1 GAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVH 60
Query: 243 SKTINPMWNEDLMFV--AAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKP 300
KT+NP++NE F AE + L +V D ++ +++G+ ++ P
Sbjct: 61 RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP--P 118
Query: 301 VNTRWFNLEK 310
W ++ +
Sbjct: 119 DRPLWRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.6 bits (91), Expect = 3e-04
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 11/119 (9%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTW 419
L + +L A L + + +K +T+ + P +NE + +
Sbjct: 15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 74
Query: 420 EVFDPC---TVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVY--THSYPLL 473
V + V+D + IG+V + ++ +L
Sbjct: 75 SVPLAELAQRKLHFSVYDFDRF------SRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.2 bits (153), Expect = 1e-12
Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 18/123 (14%)
Query: 47 VKAKDL-PGKDVTGSCDPYVEVKLGNY-----KGTTKHFEKKSNPEWNQCFAFSKDRIQA 100
+ +L + + P+ VK+ T + PEW F +
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGR- 67
Query: 101 SVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELML 160
V+++++ +D + V ++ + +R ++ A W L+ ++++
Sbjct: 68 -VIQIVLMRAA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-------PQAKVLM 116
Query: 161 AVW 163
V
Sbjct: 117 CVQ 119
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.2 bits (153), Expect = 1e-12
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 40 QYLYVRVVKAKDLP--GKDVTGSCDPYVEVKLGNYKGTTKHFEKK------SNPEWNQCF 91
+ L VR++ + LP K+ DP V V++ T + NP W+ F
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 92 AFSKDRIQASVLEVLVKDKDVVLDD-LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150
F +++ +V+D D + IG+ N + + + L + G
Sbjct: 64 EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY--------RHVHLLSKNG 115
Query: 151 DKVKTGELMLAVWM 164
D+ + L + + +
Sbjct: 116 DQHPSATLFVKISI 129
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.5 bits (133), Expect = 7e-10
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 204 VRVNIIEAQDL--LPSDKSRFPEVFVKAI-----LGNQASRTRISPSKTINPMWNEDLMF 256
+RV II Q L + +K+ + V + +T + + NP W+ + F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 257 VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTR 304
P + VED + +K++ +G+ IP ++++ H + ++
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSK 113
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.3 bits (109), Expect = 1e-06
Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 358 WKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDS-FGP 411
W+P L + ++S L P K+ D + + +T I ++ F P
Sbjct: 1 WRP--ERLRVRIISGQQL-PKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNP 57
Query: 412 RWNEQYTWEVFDPCT-VITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSY 470
RW+ ++ +EV P ++ V D K+ IG+ I + +
Sbjct: 58 RWDMEFEFEVTVPDLALVRFMVEDYDSS------SKNDFIGQSTIP---WNSLKQGYRHV 108
Query: 471 PLLVLHPSGVRKMGEVQLAVRFT 493
L L +G + L V+ +
Sbjct: 109 HL--LSKNG-DQHPSATLFVKIS 128
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 61.8 bits (149), Expect = 4e-12
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 23/136 (16%)
Query: 41 YLYVRVVKAKDLPGKD-----------VTGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWN 88
L +++ +A L T DPY+ + + + + G T +K ++P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 89 QCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148
F + L V + DD + E+ + S W LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAP-IGYDDFVANCTIQFEELLQN---GSRHFEDWIDLE-- 120
Query: 149 KGDKVKTGELMLAVWM 164
G++ + + +
Sbjct: 121 -----PEGKVYVIIDL 131
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 54.5 bits (130), Expect = 2e-09
Identities = 20/144 (13%), Positives = 49/144 (34%), Gaps = 28/144 (19%)
Query: 203 YVRVNIIEAQDLLPSDKSR-----------FPEVFVKAILGNQASRTRISPSKTINPMWN 251
+++ I EA L P+ S + ++ + + + KT +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 252 EDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311
++ + + L + + + D+ + C I + + + W +LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPI--GYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 312 VIVDGEKKETKFSSRIHLRICLDG 335
++++ I L G
Sbjct: 123 -------------GKVYVIIDLSG 133
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 52.2 bits (124), Expect = 1e-08
Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 26/145 (17%)
Query: 363 GILELGVLSAHGLTPMKT--------KDGRGTTDAYCVAKYG-QKWVRTRTIVDSFGPRW 413
G+L++ + A L P + D Y + +T T + P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 414 NEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL--ETDRVYTHSYP 471
++++ +V + I + VF + I G D + I+ L R +
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPI------GYDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 472 LLVLHPSGVRKMGEVQLAVRFTCSS 496
L G+V + + + SS
Sbjct: 119 L--------EPEGKVYVIIDLSGSS 135
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 2e-10
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 17/129 (13%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG----TTKHFEKKS 83
YD Q L+V ++A + G CD YV+ + N G T +++
Sbjct: 16 HYCLDYD--CQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQL 70
Query: 84 NPEWNQCFAFSKDRIQASVLEVLVKDKDVV---LDDLIGRVMFDLNEVPKRIPPDSPLAP 140
+ W + + + + + + G + L+ +
Sbjct: 71 HTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA----- 125
Query: 141 QWYRLEDRK 149
QW L+
Sbjct: 126 QWGELKTSG 134
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 2e-06
Identities = 15/117 (12%), Positives = 25/117 (21%), Gaps = 13/117 (11%)
Query: 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY----GQKWVRTRTIVDSFGPRWNE 415
L + L A + G D Y G +T W E
Sbjct: 23 CQKAELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEE 76
Query: 416 QYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472
+ + + + S G++R+ L L
Sbjct: 77 GLVLPLAEEELPTATLTL---TLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 6e-05
Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 14/140 (10%)
Query: 178 SDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQAS- 236
S ++ S + + + + V +EA + + +V+ + N+
Sbjct: 2 SSGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGS 58
Query: 237 ---RTRISPSKTINPMWNEDL--MFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQA 291
+T + + ++ W E L E L LT+ ++ V G+ + L
Sbjct: 59 VEAQTALKK-RQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL-- 115
Query: 292 VQRRLDHKPVNTRWFNLEKH 311
+W L+
Sbjct: 116 --DGTSVPLGAAQWGELKTS 133
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (111), Expect = 5e-07
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 25/121 (20%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL------GNYKGTTKHFEKKS--NPEWNQ--CF 91
L + V+ + L + V YVEV+L + TK + NP W +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 92 AFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151
+ + L V V ++ + +G + +N + L
Sbjct: 59 FEKILMPELASLRVAVMEEG---NKFLGHRIIPINAL--------NSGYHHLCLHSESNM 107
Query: 152 K 152
Sbjct: 108 P 108
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (92), Expect = 2e-04
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQAS---RTRISPSKTINPMWNEDLMF--VA 258
+ + +I Q L + EV + + G+ + +INP+W E+
Sbjct: 3 LSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKI 62
Query: 259 AEPFEEPLILTVEDRVAPNKDEVLGKCLIPL 289
P L + V + ++ LG +IP+
Sbjct: 63 LMPELASLRVAVME----EGNKFLGHRIIPI 89
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 772 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.84 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.81 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.79 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.79 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.78 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.77 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.77 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.76 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.76 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.76 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.76 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.75 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.74 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.74 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.73 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.72 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.71 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.68 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.68 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.67 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.66 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.66 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.65 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.64 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.63 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.62 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.62 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.61 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.56 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.55 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.48 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.43 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.24 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 93.91 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 92.36 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.5e-22 Score=177.68 Aligned_cols=123 Identities=27% Similarity=0.470 Sum_probs=109.1
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCC
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIH 439 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~ 439 (772)
.+.|.|+|+|++|+||+.+ +..|++||||+++++++.++|+++++|.||.|||.|.|.+.++.+.|.|+|||++.++
T Consensus 3 ~~~G~L~V~v~~A~~L~~~---d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CccEEEEEEEEEeECCCCC---CCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCc
Confidence 3569999999999999987 6778999999999999999999999999999999999999988899999999998865
Q ss_pred CCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||++.|+++++..+. .+|+.|......+. ..|+|++++++.+
T Consensus 80 ------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 ------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA-FKGVIYLEMDLIY 125 (126)
T ss_dssp ------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSC-CSSEEEEEEEEEE
T ss_pred ------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCCc-eeEEEEEEEEEEE
Confidence 7899999999999998876 68999876654443 4599999998854
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=7.2e-21 Score=170.29 Aligned_cols=120 Identities=34% Similarity=0.532 Sum_probs=106.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CC
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LD 115 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d 115 (772)
+++|.|+|+|++|+||+..+..|.+||||++++++++++|+++++|.||.|||+|.|.+.++ .+.|.|+|||++.. +|
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~d 81 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKPP 81 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEEE
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcCc
Confidence 56899999999999999999999999999999999999999999999999999999999875 47899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEee
Q 004127 116 DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWMG 165 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~ 165 (772)
++||++.++|.++..+ ..+|+.|....+. ..+ |+|.+++.+.
T Consensus 82 ~~lG~~~i~l~~l~~~-------~~~~~~l~~~~~~~~~~-G~i~l~~~~i 124 (126)
T d2ep6a1 82 DFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFK-GVIYLEMDLI 124 (126)
T ss_dssp EECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCS-SEEEEEEEEE
T ss_pred ceEEEEEEEHHHCCCC-------CceEEEccccCCCCcee-EEEEEEEEEE
Confidence 9999999999998654 3579998766543 345 9999998764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=6.6e-20 Score=166.35 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=107.3
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeccc-CCCCCeecceEEEEeeCCCcEEEEEEEeCCc
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIV-DSFGPRWNEQYTWEVFDPCTVITVGVFDNGH 437 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~ 437 (772)
..+.|.|+|+|++|++|+.. +..|++||||++++++...+|++++ ++.||.|||.|.|.+.++...|+|+|||++.
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence 34569999999999999987 6779999999999999999999987 5899999999999999888889999999998
Q ss_pred CCCCCCCCCCcccEEEEEecCcccc-CceEeeeEeeeecCCCCcccccEEEEEEEEeec
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLET-DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCS 495 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 495 (772)
++ +|++||.+.|+|.++.. +.....|+++... .+..|+|+++++|.|+
T Consensus 83 ~~------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~----~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT------EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD----EEYKGEIWVALSFKPS 131 (136)
T ss_dssp CT------TTCCSEEEEEESHHHHHHSEEEEEEEEEEET----TEEEEEEEEEEEEEEC
T ss_pred CC------CCCEEEEEEEEhHHhcccCCcCcEEEEecCC----CccCEEEEEEEEEEeC
Confidence 65 89999999999999744 4555789988642 2346999999999874
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2e-19 Score=160.97 Aligned_cols=119 Identities=17% Similarity=0.246 Sum_probs=102.4
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC---EEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~ 438 (772)
+.|+|+|++|+||+.....|..|.+||||++.+++ ++.||++++++.||.|||+|.|.+.++ ...|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 68999999999998754445568899999999975 568999999999999999999999875 46899999999864
Q ss_pred CCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||.+.++|+++..+.....||+|... ..|.|++.+++.+
T Consensus 83 -------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 83 -------MDETLGTATFTVSSMKVGEKKEVPFIFNQV------TEMVLEMSLEVAS 125 (126)
T ss_dssp -------CCEEEEEEEEEGGGSCTTCEEEEEEEETTT------EEEEEEEEEECCC
T ss_pred -------CCCeEEEEEEEHHHccCCCeEEEEEEccCC------CeEEEEEEEEEEe
Confidence 789999999999999999999999999532 3488888888754
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=1.9e-19 Score=163.27 Aligned_cols=124 Identities=27% Similarity=0.391 Sum_probs=106.1
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeec-CCCCCeeccEEEEEeccCCCceEEEEEEecCCC-
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFE-KKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV- 113 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~- 113 (772)
..+.|.|+|+|++|++|+..+..|.+||||++++++++.+|++++ ++.||.|||+|.|.+.+. ...|.|+|||++..
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~ 84 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGT 84 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCT
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCC
Confidence 356799999999999999999899999999999999998999886 588999999999999874 46699999999998
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeec
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQ 167 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (772)
+|++||++.|+|.++.... .....|+.|... .+.. |+|.+++.|.+.
T Consensus 85 ~d~~iG~~~i~L~~l~~~~----~~~~~~~~l~~~--~~~~-G~i~l~l~~~p~ 131 (136)
T d1wfja_ 85 EDDAVGEATIPLEPVFVEG----SIPPTAYNVVKD--EEYK-GEIWVALSFKPS 131 (136)
T ss_dssp TTCCSEEEEEESHHHHHHS----EEEEEEEEEEET--TEEE-EEEEEEEEEEEC
T ss_pred CCCEEEEEEEEhHHhcccC----CcCcEEEEecCC--CccC-EEEEEEEEEEeC
Confidence 8999999999999986432 234679998753 3455 999999999764
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=5.6e-19 Score=158.59 Aligned_cols=120 Identities=34% Similarity=0.448 Sum_probs=99.1
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEec--cC
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKD--RI 98 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~--~~ 98 (772)
+|++.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++.+ ++.+|++++++.||+|||+|.|.+. +.
T Consensus 4 ~G~l~~sl~y~~--~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~ 81 (130)
T d1dqva1 4 CGRISFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 81 (130)
T ss_dssp SCEEEEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred cEEEEEEEEEEC--CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHc
Confidence 678888888875 4569999999999999999899999999999953 5789999999999999999999984 33
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
....|.|+|||++.+ +|++||++.|++.......+.+ ...|++|.+.
T Consensus 82 ~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~---~~~W~~L~~~ 129 (130)
T d1dqva1 82 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD---RPLWRDILEG 129 (130)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSS---CCCCEECBCC
T ss_pred CCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCC---CcEEEecccC
Confidence 457799999999988 9999999999865443332222 4569999863
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.77 E-value=1.6e-18 Score=156.60 Aligned_cols=120 Identities=21% Similarity=0.310 Sum_probs=102.1
Q ss_pred cEEEEEEEEecCCCCCcc--------CCCCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKT--------KDGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~--------~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~ 433 (772)
|.|+|+|++|+||++.+. ....+.+||||+|.+++.. .+|++++++.||.|||.|.|++.+ ...|.|+||
T Consensus 6 G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V~ 84 (136)
T d1gmia_ 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAVF 84 (136)
T ss_dssp EEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEE
T ss_pred EEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEEE
Confidence 899999999999987531 1246779999999999876 589999999999999999999975 467999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccC--ceEeeeEeeeecCCCCcccccEEEEEEEEeecch
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETD--RVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSL 497 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 497 (772)
|++.++ +|++||.+.|+|+++..+ .....|++|.. .|+|++.++++++++
T Consensus 85 d~~~~~------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--------~G~v~l~v~~~~~~g 136 (136)
T d1gmia_ 85 HDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWIDLEP--------EGKVYVIIDLSGSSG 136 (136)
T ss_dssp ECCSSS------SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--------SCEEEEEEEEEEEEC
T ss_pred EecCCC------CceeEEEEEEEHHHhhhcCCcceeEEEeCCC--------CcEEEEEEEEEeCCC
Confidence 999865 899999999999999543 45678999853 499999999998763
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.1e-19 Score=157.28 Aligned_cols=117 Identities=25% Similarity=0.416 Sum_probs=99.8
Q ss_pred eeEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC
Q 004127 39 MQYLYVRVVKAKDLPGK---DVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV 112 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~ 112 (772)
.+.|+|+|++|+||+.. |..|.+||||++.+++ ++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 36899999999999974 3457899999999986 67899999999999999999999987777899999999988
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 113 VLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 113 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
.+|++||++.++|.++..+. ....||+|.+.. . |+|.+++.+.
T Consensus 82 ~~d~~lG~~~i~L~~l~~~~-----~~~~~~~L~~~~----~-g~i~~~l~~~ 124 (126)
T d1rlwa_ 82 VMDETLGTATFTVSSMKVGE-----KKEVPFIFNQVT----E-MVLEMSLEVA 124 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTC-----EEEEEEEETTTE----E-EEEEEEEECC
T ss_pred CCCCeEEEEEEEHHHccCCC-----eEEEEEEccCCC----e-EEEEEEEEEE
Confidence 89999999999999997553 356899997642 2 8888877653
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.8e-18 Score=155.44 Aligned_cols=122 Identities=22% Similarity=0.227 Sum_probs=98.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
++|.|+|++|++++..+..+.+||||++.++++.++|++++++.||.|||.|.|.+.+ .+.|.|+|||++.+ +|++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i 83 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL 83 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceE
Confidence 6899999999999998888899999999999999999999999999999999999975 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC-CceeeeEEEEEEEe
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG-DKVKTGELMLAVWM 164 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 164 (772)
|++.++|.++.............|+.|....+ .... |+|.+.+..
T Consensus 84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~-G~L~v~l~~ 129 (133)
T d2nq3a1 84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI-GDLSICLDG 129 (133)
T ss_dssp EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEE-EEEEEEEES
T ss_pred EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEE-EEEEEEEee
Confidence 99999999986432211222334555555433 3345 999988754
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.7e-18 Score=158.25 Aligned_cols=118 Identities=31% Similarity=0.450 Sum_probs=102.0
Q ss_pred cccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeecCCCCCeeccEEEEEec--c
Q 004127 23 SITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSKD--R 97 (772)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~--~ 97 (772)
.+|.+.+++.|+... +.|+|+|++|+||+..+..|.+||||++++. .++.+|++++++.||.|||+|.|.+. +
T Consensus 19 ~~G~l~~sl~y~~~~--~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~ 96 (143)
T d1rsya_ 19 KLGKLQYSLDYDFQN--NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96 (143)
T ss_dssp CCCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHH
T ss_pred cceEEEEEEEEeCCC--CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeec
Confidence 367889999988765 4999999999999999988999999999993 36789999999999999999999874 3
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
.....|.|+|||++.. ++++||++.|+|.++..+. ...+||+|+.
T Consensus 97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~s 142 (143)
T d1rsya_ 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS 142 (143)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBC
T ss_pred cCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCC-----CCccEEeCCC
Confidence 3567899999999988 8999999999999996542 3568999974
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=2e-18 Score=155.47 Aligned_cols=103 Identities=25% Similarity=0.429 Sum_probs=90.9
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeCC--CcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFDP--CTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~~--~~~l~i~v~D~ 435 (772)
+.|.|.|++|+||+.+ |..|.+||||++.+ +..++||+++++|.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~---d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEeeeCCCCC---CCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence 6899999999999988 66789999999998 45578999999999999999999998864 45799999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|.++ +|++||.+.|++.++..+. ..+||+|.+.
T Consensus 92 d~~~------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 124 (132)
T d1a25a_ 92 DLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 124 (132)
T ss_dssp CSSS------CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred CCCC------CCcEeEEEEEeHHHcCCCC-CCeEEECCCC
Confidence 9875 8999999999999997654 6899999764
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.76 E-value=3.5e-18 Score=154.32 Aligned_cols=116 Identities=19% Similarity=0.352 Sum_probs=99.4
Q ss_pred eeEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCee-eeeeeecCCCCCeeccEEEEEeccCCCceEEEE
Q 004127 39 MQYLYVRVVKAKDLPGKD-----------VTGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVL 106 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~-----------~~~~~dpyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~ 106 (772)
.|.|+|+|++|++|++.+ ..+.+||||+++++++. .+|++++++.||.|||.|.|.+.+ .+.|.|+
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i~ 82 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEEE
Confidence 589999999999998753 35679999999999965 689999999999999999999975 4789999
Q ss_pred EEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 107 VKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 107 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
|||.+.+ +|++||.+.|+|.++..+.. .....|++|++. |+|.+.+.+..
T Consensus 83 V~d~~~~~~d~~iG~~~i~l~~l~~~~~---~~~~~w~~L~p~-------G~v~l~v~~~~ 133 (136)
T d1gmia_ 83 VFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEPE-------GKVYVIIDLSG 133 (136)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBSS-------CEEEEEEEEEE
T ss_pred EEEecCCCCceeEEEEEEEHHHhhhcCC---cceeEEEeCCCC-------cEEEEEEEEEe
Confidence 9999998 89999999999999986642 235689999753 89999887764
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=3e-18 Score=154.29 Aligned_cols=115 Identities=31% Similarity=0.490 Sum_probs=96.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeeeecCCCCCeeccEEEEEeccC-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAFSKDRI- 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~-----~~~~~kT~~~~~t~nP~Wne~f~f~v~~~- 98 (772)
|.+.+++.+. .+.|.|+|++|+||++++..|.+||||++++ +..+.+|+++++|.||+|||+|.|.+...
T Consensus 4 G~i~l~~~~~----~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 79 (132)
T d1a25a_ 4 GRIYIQAHID----REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 79 (132)
T ss_dssp CEEEEEEEES----SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred cEEEEEEEec----CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence 4455555553 3689999999999999999999999999999 33578999999999999999999998643
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
....|.|+|||++.+ +|++||.+.|+|.++..+. ..+||+|.+.+
T Consensus 80 ~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~------~~~W~~L~~~~ 125 (132)
T d1a25a_ 80 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 125 (132)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC------EEEEEECBCHH
T ss_pred cCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCCC------CCeEEECCCCC
Confidence 245799999999998 8999999999999986432 46899997643
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=6.5e-19 Score=161.12 Aligned_cols=116 Identities=34% Similarity=0.601 Sum_probs=99.2
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eeeeeeeecCCCCCeeccE
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN--------------YKGTTKHFEKKSNPEWNQC 90 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--------------~~~kT~~~~~t~nP~Wne~ 90 (772)
|.+.+++.|+ .|.|.|+|++|+||+..+..|.+||||++++.+ ++.||++++++.||.|||.
T Consensus 7 G~l~lsl~y~----~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T d1rh8a_ 7 GEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp CEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred eEEEEEEEEe----CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEE
Confidence 6788998886 478999999999999999999999999999943 2368999999999999999
Q ss_pred EEEEe---ccCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 91 FAFSK---DRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 91 f~f~v---~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
|.|.. .++....|.|+|||++.+ +|++||++.|+|.++.... ...+||+|.+++
T Consensus 83 f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCC-----CceEEEECcCcC
Confidence 99974 234567899999999988 8999999999999997653 257999998764
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=9.6e-18 Score=153.16 Aligned_cols=103 Identities=24% Similarity=0.369 Sum_probs=92.2
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---CCEEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNG 436 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---~~~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~ 436 (772)
+.|.|.|++|+||+.+ +..|.+||||+|.+ +.+.++|++++++.||.|||.|.|.+.. ....|.|+|||++
T Consensus 34 ~~L~V~V~~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d 110 (143)
T d1rsya_ 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD 110 (143)
T ss_dssp TEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred CEEEEEEEEccCCCCC---CCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcC
Confidence 6899999999999987 66789999999998 4566899999999999999999998864 3578999999999
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
.++ ++++||.+.|+|.++..++...+||+|..
T Consensus 111 ~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 111 RFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SSS------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCC------CCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 865 88999999999999988888899999964
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=2.5e-17 Score=147.71 Aligned_cols=118 Identities=22% Similarity=0.383 Sum_probs=96.3
Q ss_pred eEEEEEEEEeecCCCC--CCCCCCCcEEEEEECC-----eeeeeeeecCC-CCCeeccEEEEEeccCCCceEEEEEEecC
Q 004127 40 QYLYVRVVKAKDLPGK--DVTGSCDPYVEVKLGN-----YKGTTKHFEKK-SNPEWNQCFAFSKDRIQASVLEVLVKDKD 111 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~--~~~~~~dpyv~v~~~~-----~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~~L~i~V~d~~ 111 (772)
..|.|+|++|+||+.. +.++.+||||++++.+ ++.+|++++++ .||.|||+|.|.+.......|.|+|||++
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 4799999999999754 5577899999999943 67899988655 69999999999987666788999999999
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 112 VV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 112 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
.. +|++||++.++|..+..+ .+|++|.+..|+....|+|.+.+.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g--------~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC--------CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 98 899999999999998643 36999998888765448888888653
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.1e-17 Score=148.38 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=95.4
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
+.|+|+|++|++++.. +..+++||||+|.+|++.+||+++++|.||.|||.|.|++. +.+.|.|+|||++.++
T Consensus 6 ~~L~v~v~~A~~~~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~~~~l~~~V~d~d~~~--- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK--- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS---
T ss_pred eEEEEEEEEeECCCcC---CCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE-ecceeEEEEEEccCCC---
Confidence 6899999999999876 55678999999999999999999999999999999999986 4678999999999876
Q ss_pred CCCCCcccEEEEEecCccc---cCce--EeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLE---TDRV--YTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~---~~~~--~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+|++||++.++|.++. .+.. ...++.+... .++.+..|+|.+.+..
T Consensus 79 ---~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 79 ---SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KEPTETIGDLSICLDG 129 (133)
T ss_dssp ---CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-SCTTSEEEEEEEEEES
T ss_pred ---CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-CCCceEEEEEEEEEee
Confidence 8999999999999873 2322 2334444432 2344556888877764
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.1e-17 Score=148.98 Aligned_cols=114 Identities=28% Similarity=0.527 Sum_probs=91.6
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEE-ec--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFS-KD-- 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~-v~-- 96 (772)
|++.+++.|+... +.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||.|||+|.|. +.
T Consensus 1 G~l~l~l~y~~~~--~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~ 78 (125)
T d2bwqa1 1 GQLSIKLWFDKVG--HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 78 (125)
T ss_dssp CEEEEEEEEETTT--TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred CEEEEEEEEECCC--CEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChh
Confidence 4567777776544 59999999999999998889999999999932 46899999999999999999996 32
Q ss_pred cCCCceEEEEEEecCCC---CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 97 RIQASVLEVLVKDKDVV---LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+.....|.|+|||++.. ++++||++.|+|.++.... ..+||+|+
T Consensus 79 ~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~------~~~Wy~L~ 125 (125)
T d2bwqa1 79 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 125 (125)
T ss_dssp GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred hcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC------CCEEEeCc
Confidence 33456899999999976 5669999999999987553 35799985
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=3.3e-17 Score=144.99 Aligned_cols=102 Identities=30% Similarity=0.457 Sum_probs=88.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCcee
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLI 118 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~l 118 (772)
|+.|.|+|++|++|.+.+ .+||||++++++++.+|++++ +.||.|||+|.|.+.++ ...|.|+|||.+..+|++|
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~l 75 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTMV 75 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEEE
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcce
Confidence 568999999999999876 679999999999999999986 55999999999999876 5789999999988899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
|++.|+|.++.... .....+||+|..+
T Consensus 76 G~~~I~L~~l~~~~---~~~~~~W~~L~~~ 102 (128)
T d2cjta1 76 GTVWIPLRTIRQSN---EEGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEGGGSCBCS---SCCCCEEEECBC-
T ss_pred EEEEEEehhhccCC---CCCCCeeEECCcc
Confidence 99999999996543 1335689999765
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.7e-17 Score=145.59 Aligned_cols=116 Identities=21% Similarity=0.239 Sum_probs=92.7
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
+.|.|.|.+|++|.+. ++.||||++++++.+.+|.++++ .||.|||.|.|.+.++...|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~------~~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~---- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI---- 70 (128)
T ss_dssp EEEEEEEEEEECSSCG------GGCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS----
T ss_pred eEEEEEEEEEECCCCC------CCcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc----
Confidence 5799999999999875 46899999999999999998864 599999999999999989999999999864
Q ss_pred CCCCCcccEEEEEecCcccc--CceEeeeEeeeecCC--CCc------ccccEEEEEEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLET--DRVYTHSYPLLVLHP--SGV------RKMGEVQLAVRF 492 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~--~g~------~~~G~i~l~~~f 492 (772)
+|++||.+.|+|+++.. +.....||+|..... .|. ...+.|.+.++|
T Consensus 71 ---~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 71 ---WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp ---CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred ---CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 78999999999999853 344578999965321 111 124566676666
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=5.3e-17 Score=145.61 Aligned_cols=119 Identities=18% Similarity=0.305 Sum_probs=91.2
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccC-CCCCeecceEEEEeeCC-CcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVD-SFGPRWNEQYTWEVFDP-CTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~-t~~P~Wne~~~~~v~~~-~~~l~i~v~D~ 435 (772)
..|+|+|++|++|+..+. +.+|++||||+|++ +...+||+++++ ++||.|||+|.|.+..+ ...|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~-~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCC-CCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence 479999999999976422 56788999999998 346799999876 47999999999998764 46799999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
|..+ +|++||++.|+|+++..| .+|++|.+...... ..++|.+.+.+
T Consensus 83 d~~~------~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~-~~~~L~v~i~~ 129 (131)
T d1qasa2 83 DSSS------KNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQH-PSATLFVKISI 129 (131)
T ss_dssp CTTT------CCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEE-EEEEEEEEEEE
T ss_pred cCCC------CCcEEEEEEEEEeccCCC---CEEEECCCCCcCCC-CCCEEEEEEEE
Confidence 9865 899999999999999776 46899976532211 23566666654
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=6e-18 Score=154.62 Aligned_cols=104 Identities=25% Similarity=0.371 Sum_probs=90.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC--------------EEEEeecccCCCCCeecceEEEEeeC----C
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ--------------KWVRTRTIVDSFGPRWNEQYTWEVFD----P 424 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~--------------~~~~T~~~~~t~~P~Wne~~~~~v~~----~ 424 (772)
|.|.|.|++|+||+.+ +..|.+||||++++.+ ...||++++++.||.|||.|.|.+.. .
T Consensus 18 ~~L~V~V~~A~~L~~~---d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 94 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEeECCCCc---CCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccC
Confidence 7899999999999987 6778999999999832 12589999999999999999998543 3
Q ss_pred CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 425 CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 425 ~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
...|.|+|||++.++ +|++||.+.|+|.++..++...+||+|...
T Consensus 95 ~~~L~i~V~d~d~~~------~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 95 KKTLEVTVWDYDRFS------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TCEEEEEEEEECSSS------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEEEEEEecCCC------CCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 668999999999875 889999999999999887778899999764
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.5e-16 Score=142.46 Aligned_cols=109 Identities=21% Similarity=0.323 Sum_probs=89.4
Q ss_pred ceEEEEEEEEEeecCCCCCCCCCCccEEEEEEC---CeeeeeccccCCCCCCceeceeEEEeeCC--CCCcEEEEEEEcc
Q 004127 200 KLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILG---NQASRTRISPSKTINPMWNEDLMFVAAEP--FEEPLILTVEDRV 274 (772)
Q Consensus 200 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d 274 (772)
..+.|.|+|++|++|+.++..+.+||||++++. .++++|+++++ +.||.|||.|.|.+... ....|.|+|||++
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFD 94 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence 345799999999999999999999999999994 46789999987 99999999999998543 3557999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004127 275 APNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311 (772)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 311 (772)
.++++++||++.|++.....+ .......|++|...
T Consensus 95 ~~~~d~~iG~~~i~~~~~l~~--~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 95 RFSRHDLIGQVVLDNLLELAE--QPPDRPLWRDILEG 129 (130)
T ss_dssp SSSCCCEEEEEECCCTTGGGS--SCSSCCCCEECBCC
T ss_pred CCCCCceEEEEEECchhhhhc--CCCCCcEEEecccC
Confidence 999999999999986543322 22235579999864
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.1e-16 Score=143.02 Aligned_cols=106 Identities=25% Similarity=0.421 Sum_probs=90.8
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCC-CCCcEEEEEEC---CeeeeeeeecCCCCCeeccEEEEEe-c--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTG-SCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSK-D-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~-~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v-~-- 96 (772)
+|.+.+++.|+... ..|.|+|++|+||+..+..+ .+||||++.+. .++.+|++++++.||.|||+|.|.. .
T Consensus 8 ~G~l~~sl~Y~~~~--~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 85 (138)
T d1ugka_ 8 LGTLFFSLEYNFER--KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85 (138)
T ss_dssp CCEEEEEEEEEGGG--TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred CEEEEEEEEEeCCC--CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHH
Confidence 68899999998755 49999999999999887655 48999999994 3678999999999999999999974 2
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 131 (772)
+.....|+|+|||++.+ +|++||++.|+|.++...
T Consensus 86 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred HcccceEEEEEEECCCCCCCcEEEEEEEEcccccCC
Confidence 23356899999999998 899999999999998644
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.6e-16 Score=141.28 Aligned_cols=104 Identities=19% Similarity=0.378 Sum_probs=82.0
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v 432 (772)
.+.|.|+|++|+||+.. +..+.+||||+|.+ +....||++++++.||.|||.|.|.... ....|.|+|
T Consensus 13 ~~~L~V~V~~a~~L~~~---~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v 89 (125)
T d2bwqa1 13 GHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 89 (125)
T ss_dssp TTEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred CCEEEEEEEEeECCCCc---CCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEE
Confidence 37999999999999987 66689999999998 2345899999999999999999997432 245799999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
||.+.++ .+++++||++.|+|+++..... .+||+|.
T Consensus 90 ~d~~~~~----~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 90 WDQARVR----EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEC-----------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EECCCCC----CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9998754 2367799999999999875543 6899984
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.6e-16 Score=142.43 Aligned_cols=116 Identities=18% Similarity=0.316 Sum_probs=96.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeecCCCCCeeccEEEEEec--c
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN----YKGTTKHFEKKSNPEWNQCFAFSKD--R 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~----~~~kT~~~~~t~nP~Wne~f~f~v~--~ 97 (772)
.+++.+++.|+... +.|.|+|++|+||+. .|.+||||++.+.+ ...+|++++++.||+|||+|.|.+. +
T Consensus 12 ~~~l~~sl~y~~~~--~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~ 86 (138)
T d1wfma_ 12 APKLHYCLDYDCQK--AELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred CCEEEEEEEECCCC--CEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehh
Confidence 46677888887655 599999999999954 46799999999954 3578999999999999999999984 3
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+....|.|+|||.+.+ ++++||++.|+|.++.... ....|++|.+..
T Consensus 87 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~W~~L~~~~ 134 (138)
T d1wfma_ 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSG 134 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCS
T ss_pred ccceEEEEEEeeecccccceeeeEEEEEhHHccCCC-----CceEeEeCCCCC
Confidence 4568899999999988 8999999999999986542 257899998753
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.5e-16 Score=140.82 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=88.5
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEe
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFD 434 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D 434 (772)
.+.|.|+|++|++|+. .|.+||||++.+.+ ..+||++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 25 ~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d 98 (138)
T d1wfma_ 25 KAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT 98 (138)
T ss_dssp TTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred CCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEee
Confidence 3799999999999953 36799999999932 34799999999999999999999874 35789999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecC
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLH 476 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 476 (772)
++.++ ++++||++.|+|.++..+....+|++|...+
T Consensus 99 ~~~~~------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 99 CDRFS------RHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp CCSSC------TTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred ecccc------cceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence 99875 8899999999999998777779999998653
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=3.2e-16 Score=141.99 Aligned_cols=102 Identities=26% Similarity=0.363 Sum_probs=88.4
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--c
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD--R 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~ 97 (772)
|.+.+++.|+- ..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+. +
T Consensus 2 G~l~l~l~Y~~--~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~ 79 (137)
T d2cm5a1 2 GKILVSLMYST--QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 79 (137)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred cEEEEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHH
Confidence 56778888874 5569999999999999988889999999999832 4679999999999999999999985 3
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEcccc
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 128 (772)
+....|.|.|||++.. ++++||++.+++..+
T Consensus 80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111 (137)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred ccccEEEEEeeeCCCCCCCCEEEEEEeCcccc
Confidence 3467899999999988 999999999999765
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2.1e-16 Score=146.37 Aligned_cols=122 Identities=30% Similarity=0.371 Sum_probs=98.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccC
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRI 98 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~ 98 (772)
+|++.+++.|+-.. +.|.|+|++|+||+..+..+.+||||++++.. .+.+|++++++.||+|||+|.|.+...
T Consensus 11 ~G~l~~sl~Y~~~~--~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~ 88 (157)
T d1uowa_ 11 LGDICFSLRYVPTA--GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88 (157)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred eeEEEEEEEEcCCC--CEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH
Confidence 67888888887544 59999999999999988889999999999853 346899999999999999999998543
Q ss_pred --CCceEEEEEEecCCC-CCceeEEEEEEccccCCC--------CCCCCCCCCeEEEeecC
Q 004127 99 --QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKR--------IPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 99 --~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~--------~~~~~~~~~~w~~L~~~ 148 (772)
....|.|+|||++.+ ++++||++.|++.....+ ..+ .....+|++|..+
T Consensus 89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~-~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP-RRPIAQWHTLQVE 148 (157)
T ss_dssp GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHST-TCCEEEEEECBCH
T ss_pred HcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCC-CCceeEeEeCCCC
Confidence 356899999999999 899999999999753211 001 2335689999764
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1e-15 Score=138.53 Aligned_cols=103 Identities=19% Similarity=0.337 Sum_probs=84.9
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v 432 (772)
..+.|.|.|++|+||+.. +..+.+||||++++ .....||+++++|.||.|||.|.|.+... ...|.|.|
T Consensus 13 ~~~~L~V~v~~a~nL~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v 89 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 89 (137)
T ss_dssp TTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred CCCEEEEEEEEEECCCCC---CCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence 348999999999999887 56688999999988 22457999999999999999999998743 46799999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
||++.++ ++++||.+.+++..+..+ ..+|++|..
T Consensus 90 ~~~~~~~------~~~~iG~~~i~l~~~~~~--~~~W~~l~~ 123 (137)
T d2cm5a1 90 WDYDIGK------SNDYIGGCQLGISAKGER--LKHWYECLK 123 (137)
T ss_dssp EECCSSS------CCEEEEEEEEETTCCHHH--HHHHHHHHH
T ss_pred eeCCCCC------CCCEEEEEEeCccccCcc--hhhhhhHhh
Confidence 9998865 899999999999876432 256766654
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1.9e-16 Score=143.46 Aligned_cols=102 Identities=30% Similarity=0.415 Sum_probs=81.6
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeeecCCCCCeeccEEEEEec--c
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG--N---YKGTTKHFEKKSNPEWNQCFAFSKD--R 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~---~~~kT~~~~~t~nP~Wne~f~f~v~--~ 97 (772)
|++.+++.|+- ..+.|.|+|++|+||+..+..+.+||||++++. + .+.+|++++++.||.|||+|.|.+. +
T Consensus 2 G~l~~sl~Y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~ 79 (138)
T d1w15a_ 2 GELLVSLCYQS--TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES 79 (138)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS
T ss_pred cEEEEEEEEcC--CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHH
Confidence 56778877774 445999999999999999988999999999983 2 3568999999999999999999974 3
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEcccc
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 128 (772)
.....|.|.|||++.+ ++++||++.|++...
T Consensus 80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 80 LEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp STTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred hCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 3456799999999988 899999999998754
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=1e-15 Score=138.50 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=73.4
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCE---EEEeecccCCCCCeecceEEEEeeCC---CcEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQK---WVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~---~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v 432 (772)
..+.|.|.|++|+||+.+ +..+.+||||++.+ ++. ..||++++++.||.|||+|.|.+... ...|.|.|
T Consensus 13 ~~~~L~V~v~~a~~L~~~---~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v 89 (138)
T d1w15a_ 13 TTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV 89 (138)
T ss_dssp TTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCC---CCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence 347999999999999987 66788999999988 332 36899999999999999999998642 45699999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
||++.++ ++++||.+.|++...
T Consensus 90 ~d~~~~~------~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 90 LDSERGS------RNEVIGRLVLGATAE 111 (138)
T ss_dssp EECCTTS------CCEEEEEEEESTTCC
T ss_pred EeCCCCC------CCCEEEEEEEcchhC
Confidence 9999865 899999999999864
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.6e-15 Score=135.70 Aligned_cols=116 Identities=19% Similarity=0.295 Sum_probs=92.0
Q ss_pred cceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEE---CCEE
Q 004127 324 SSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGR-GTTDAYCVAKY---GQKW 399 (772)
Q Consensus 324 ~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~---~~~~ 399 (772)
.|+|++.++.. +..+.|.|+|++|+||+.+ +.. +.+||||++.+ +...
T Consensus 8 ~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~~L~~~---d~~~~~~dpyV~v~l~~~~~~~ 59 (138)
T d1ugka_ 8 LGTLFFSLEYN-------------------------FERKAFVVNIKEARGLPAM---DEQSMTSDPYIKMTILPEKKHK 59 (138)
T ss_dssp CCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCC---BTTTTBCEEEEEEEEETTTCSE
T ss_pred CEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCC---CCCCCccceEEEEEEcCCCCEe
Confidence 68999888753 2236899999999999987 433 45899999999 4567
Q ss_pred EEeecccCCCCCeecceEEEEeeCC----CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc-CceEeeeEeee
Q 004127 400 VRTRTIVDSFGPRWNEQYTWEVFDP----CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET-DRVYTHSYPLL 473 (772)
Q Consensus 400 ~~T~~~~~t~~P~Wne~~~~~v~~~----~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~-~~~~~~~~~L~ 473 (772)
+||++++++.||.|||.|.|..... ...|.|+|||++.++ ++++||.+.|+|+++.. ......|..+.
T Consensus 60 ~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~------~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC------CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred EeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCC------CCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 8999999999999999999974432 457999999999875 89999999999999853 33344555543
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=3e-15 Score=138.49 Aligned_cols=119 Identities=26% Similarity=0.339 Sum_probs=97.7
Q ss_pred cccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCE-
Q 004127 322 KFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQK- 398 (772)
Q Consensus 322 ~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~- 398 (772)
...|+|.+.++.. +..+.|.|.|++|+||+.. +..+.+||||++.+ ++.
T Consensus 9 ~~~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~~L~~~---~~~~~~dpyV~v~l~~~~~~ 60 (157)
T d1uowa_ 9 EKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKR 60 (157)
T ss_dssp GCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEE
T ss_pred eeeeEEEEEEEEc-------------------------CCCCEEEEEEEEEEEcccc---cCCCCCCeeEEEEEecCCcc
Confidence 3479999888753 3337999999999999977 66789999999988 332
Q ss_pred --EEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc------------c
Q 004127 399 --WVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL------------E 461 (772)
Q Consensus 399 --~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l------------~ 461 (772)
..||++++++.||+|||.|.|.+... ...|.|+|||++.++ ++++||++.|++... .
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~------~~~~iG~~~i~l~~~~~~~~hW~~~~~~ 134 (157)
T d1uowa_ 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLAN 134 (157)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCCEEEEEEEETTCCHHHHHHHHHHHHS
T ss_pred ccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCC------CCceeEEEEEecccCChhHHHHHHHHhC
Confidence 36899999999999999999998753 458999999999875 899999999999764 2
Q ss_pred cCceEeeeEeeee
Q 004127 462 TDRVYTHSYPLLV 474 (772)
Q Consensus 462 ~~~~~~~~~~L~~ 474 (772)
..+++.+||+|..
T Consensus 135 ~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 135 PRRPIAQWHTLQV 147 (157)
T ss_dssp TTCCEEEEEECBC
T ss_pred CCCceeEeEeCCC
Confidence 3456788999864
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=8.5e-17 Score=147.18 Aligned_cols=104 Identities=26% Similarity=0.373 Sum_probs=90.5
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
+|++.+++.|+ +..|.|.|+|++|+||+..+..+.+||||++++.+ .+.+|++++++.||.|||+|.|.+.
T Consensus 6 ~G~l~~sl~Y~--~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~ 83 (145)
T d1dqva2 6 LGELNFSLCYL--PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 83 (145)
T ss_dssp CCEEEEEEEEE--TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred ceEEEEEEEEc--CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh
Confidence 57789998888 45579999999999999988889999999999965 2578999999999999999999874
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVP 129 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~ 129 (772)
+.....|.|.|||++.. ++++||++.|++..+.
T Consensus 84 ~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 84 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred hcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence 34457899999999988 8999999999997663
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=3.6e-15 Score=131.19 Aligned_cols=113 Identities=15% Similarity=0.264 Sum_probs=87.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-----KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLD 115 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d 115 (772)
.|+|.|....--+....++.+||||+|++.+. ..+|+++++|+||+|||+|.|.+.+ .+.|.|.|||.+ |
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d 78 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---E 78 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---T
T ss_pred eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---c
Confidence 45555555433334555789999999999662 4678999999999999999999976 478999999975 7
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 116 DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
+++|.+.+.+.++.............|++|... |+|.+++.|.
T Consensus 79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~~-------Gkl~l~v~~f 121 (123)
T d1bdya_ 79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-------AKVLMCVQYF 121 (123)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-------CEEEEEEEEE
T ss_pred cccCccEEehhheeeccccCCCcccEEEeCCCC-------EEEEEEEEEe
Confidence 899999999999864322223446789999743 9999999774
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=1.1e-15 Score=139.63 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=93.7
Q ss_pred ccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE----
Q 004127 323 FSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK---- 398 (772)
Q Consensus 323 ~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~---- 398 (772)
..|+|++.++.. +..|.|.|.|++|+||+.. +..|.+||||+|++.+.
T Consensus 5 ~~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~nL~~~---~~~~~~dpyv~v~l~~~~~~~ 56 (145)
T d1dqva2 5 DLGELNFSLCYL-------------------------PTAGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRL 56 (145)
T ss_dssp CCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---SSSSCCCEEEEECCCTTCCTT
T ss_pred cceEEEEEEEEc-------------------------CCCCEEEEEEEEEeCCCCc---CCCCCcCceEEEEEccCCccc
Confidence 379999988743 3348999999999999887 56688999999998432
Q ss_pred -EEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 399 -WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 399 -~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
..||+++++|.||.|||.|.|.+.. ....|.|.|||++.++ ++++||.+.|++..+... ...+|++|..
T Consensus 57 ~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~------~~~~iG~~~i~l~~~~~~-~~~~W~~l~~ 129 (145)
T d1dqva2 57 KKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG------HNEVIGVCRVGPEAADPH-GREHWAEMLA 129 (145)
T ss_dssp SCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSS------CCEEEEECCCSSCTTCHH-HHHHHHTSSS
T ss_pred eeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCCCC------CCcEEEEEEECchHcCch-hhHHHHHHHh
Confidence 4789999999999999999998763 3467999999998875 889999999999876422 1255666543
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=7.7e-14 Score=122.51 Aligned_cols=105 Identities=12% Similarity=0.277 Sum_probs=85.0
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-----EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHI 438 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~ 438 (772)
++.|.++.+..++ ...|.+||||+|.+++. ..+|+++++|+||+|||+|.|.|.+ .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d-- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQ-----AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA-- 77 (123)
T ss_dssp EEEEEEEECCTTC-----CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET--
T ss_pred EEEEEEeecccCC-----CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc--
Confidence 4555666666665 34578999999999543 3678899999999999999999875 578999999963
Q ss_pred CCCCCCCCCcccEEEEEecCccc-----cCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLE-----TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++++|.+.+++.++. .+...+.|++|. +.|+|++.++|
T Consensus 78 --------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~ 120 (123)
T d1bdya_ 78 --------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQY 120 (123)
T ss_dssp --------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEE
T ss_pred --------ccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEE
Confidence 579999999999983 466788999985 35999999988
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.2e-12 Score=114.49 Aligned_cols=109 Identities=22% Similarity=0.301 Sum_probs=85.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeee--ecCCCCCeeccE-EEE-EeccCCCceEEEEEEec
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTKH--FEKKSNPEWNQC-FAF-SKDRIQASVLEVLVKDK 110 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~--~~~t~nP~Wne~-f~f-~v~~~~~~~L~i~V~d~ 110 (772)
.|.|+|++|++|+.. ++||||+|++-| .+.+|++ ..++.||.|||. |.| .+..+....|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 589999999999854 479999999842 3344444 367899999976 444 34554456899999998
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 111 DVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 111 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
+ |++||++.++|..+..+ .++++|.+..|+....+.|.+.+.+
T Consensus 78 d---~~~lG~~~ipl~~l~~G--------yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 78 G---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp T---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred C---CCEEEEEEEEcccCcCC--------ceEEEccCCCcCCCCCceEEEEEEE
Confidence 5 78999999999999654 4789999998887655888888765
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=4.1e-11 Score=104.51 Aligned_cols=92 Identities=23% Similarity=0.439 Sum_probs=70.9
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-C-----CEEEEeecc--cCCCCCeecce-EEEE-eeCC-CcEEEEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-G-----QKWVRTRTI--VDSFGPRWNEQ-YTWE-VFDP-CTVITVGV 432 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-~-----~~~~~T~~~--~~t~~P~Wne~-~~~~-v~~~-~~~l~i~v 432 (772)
.|.|+|++|++|+.. +.||||+|++ | ....+|+++ .++.||.|||. +.|. +..+ ...|.|.|
T Consensus 2 tl~V~Visaq~L~~~-------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V 74 (122)
T d2zkmx2 2 TLSITVISGQFLSER-------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 74 (122)
T ss_dssp EEEEEEEEEESCCSS-------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred EEEEEEEEeeCCCCC-------CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEE
Confidence 588999999999753 4899999988 2 234555553 56899999976 4443 4444 45899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
||+ .|++||++.++++.+..| -++.||.+.
T Consensus 75 ~D~----------d~~~lG~~~ipl~~l~~G---yR~vpL~~~ 104 (122)
T d2zkmx2 75 MEE----------GNKFLGHRIIPINALNSG---YHHLCLHSE 104 (122)
T ss_dssp EET----------TTEEEEEEEEEGGGBCCE---EEEEEEECT
T ss_pred ECC----------CCCEEEEEEEEcccCcCC---ceEEEccCC
Confidence 996 368999999999999887 477888764
|