Citrus Sinensis ID: 004133
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 772 | 2.2.26 [Sep-21-2011] | |||||||
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.817 | 0.902 | 0.328 | 8e-89 | |
| Q8N6R0 | 699 | Methyltransferase-like pr | yes | no | 0.812 | 0.896 | 0.328 | 1e-87 | |
| Q91YR5 | 698 | Methyltransferase-like pr | yes | no | 0.804 | 0.889 | 0.322 | 1e-86 | |
| A5WVX1 | 690 | Methyltransferase-like pr | yes | no | 0.844 | 0.944 | 0.303 | 4e-78 | |
| Q29LW1 | 673 | Methyltransferase-like pr | yes | no | 0.792 | 0.909 | 0.299 | 5e-66 | |
| Q9VIK9 | 673 | Methyltransferase-like pr | yes | no | 0.790 | 0.906 | 0.289 | 3e-64 | |
| Q6NTR1 | 693 | Methyltransferase-like pr | N/A | no | 0.479 | 0.533 | 0.316 | 2e-48 | |
| Q10711 | 883 | Endothelin-converting enz | no | no | 0.170 | 0.149 | 0.356 | 1e-13 | |
| O60344 | 883 | Endothelin-converting enz | no | no | 0.148 | 0.130 | 0.380 | 2e-13 | |
| Q80Z60 | 881 | Endothelin-converting enz | no | no | 0.165 | 0.145 | 0.363 | 5e-13 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 328 bits (842), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 239/728 (32%), Positives = 357/728 (49%), Gaps = 97/728 (13%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQME-FPDASFQVVLDKG 122
Query: 144 GLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++HVL F R GW +
Sbjct: 123 TLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVR 182
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADKEN--SSVVLQVTSSFDHSSLDCNKNQAFGIH 252
VH + Q +EP SL F + K + LQ+ F+ + + K
Sbjct: 183 VHQVASSQDQLLEAEPRFSLPVFAFIMTKFRPVTGSALQI---FELCAQEQGKPVRLESA 239
Query: 253 EALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV 312
E L + R++Y+ LY K + ++S +L G G+ ++ V
Sbjct: 240 EQLAEAVRERQQYAWLCSQLYR--------KAGLGSVS----LDLCNGDTGEPRYTLHVV 287
Query: 313 ----LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTS 368
+ +R+N + +FI+P+ R EWLF EEG+ + S+ RLI V L
Sbjct: 288 DSPTVKPSRDN------HFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRG 341
Query: 369 HASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVE 428
MD IQ +LS V +LAP Q+PF+ G I R V HQA S L+G ++E
Sbjct: 342 QQYEGMDSIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIE 401
Query: 429 DLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTD---VETERKK 485
D+ + D + FRRL+F + +VQSEA L++D SHR + +K
Sbjct: 402 DV--QGDDKRY----------FRRLIFLSNRNVVQSEARLLQD-VSHRAQKKRKKDRKKH 448
Query: 486 ASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVK 545
+ + Q +S D YL +H +I+G L+ + + +
Sbjct: 449 RPADTPEDLPAAQGQSIDK--------SYLCCEHHKAMIAGLALLKN---PELLLETPLA 497
Query: 546 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFV 605
+V+GLG G LP+F+H+ P I AVE+D +ML +A +FGF+Q +KVHI DG+ F+
Sbjct: 498 LLVVGLGGGSLPLFIHDHFPKSCIHAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDFI 557
Query: 606 REMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA 665
+ A D+++ DVDS D + GM+CP
Sbjct: 558 TRLAEEEA---------------------------RPHYDVIMFDVDSKDPTLGMSCPPP 590
Query: 666 DFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVL 725
FV FL VK L+ +G+FI+NLV R KD V++ +K VF L+ ++E +VN +L
Sbjct: 591 AFVAQLFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEIL 650
Query: 726 FGLSSESC 733
F C
Sbjct: 651 FCQLHSEC 658
|
Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 236/718 (32%), Positives = 358/718 (49%), Gaps = 91/718 (12%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+ F D +F V+LDKG
Sbjct: 64 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQME-FPDASFQVVLDKG 122
Query: 144 GLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 123 TLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVR 182
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIH 252
VH + Q +EP SL F + K LQ+ F+ + + K
Sbjct: 183 VHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQI---FELCAQEQRKPVRLESA 239
Query: 253 EALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV 312
E L Q R++Y+ QL K + ++S +L G G+ ++ V
Sbjct: 240 ERLAEAVQERQQYAWLCS--------QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV 287
Query: 313 ----LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTS 368
+ +R+N + +FI+P+ R EWLF +EG+ + S+ RLI V L
Sbjct: 288 DSPTVKPSRDN------HFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRG 341
Query: 369 HASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVE 428
SMD IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++E
Sbjct: 342 QQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIE 401
Query: 429 DLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASS 488
D+ + D + FRRL+F + +VQSEA L++D S + +K
Sbjct: 402 DV--QGDDKRY----------FRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQR 449
Query: 489 SSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVV 548
+ ++ + + YL +H +I+G L+ + + + +V
Sbjct: 450 PADAE-------DLPAAPGQSIDKSYLCCEHHKAMIAGLALLRN---PELLLEIPLALLV 499
Query: 549 IGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREM 608
+GLG G LP+F+H+ P I+AVE+D +ML +A +FGF+Q +KVHI DG+ ++
Sbjct: 500 VGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYI--- 556
Query: 609 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV 668
S+ G E R C D+++ DVDS D + GM+CP FV
Sbjct: 557 --------ASLAGGGE-----ARPC----------YDVIMFDVDSKDPTLGMSCPPPAFV 593
Query: 669 EGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLF 726
E SFL VK L+ +G+FI+NLV R KD V++ +K VF L+ ++E +VN +LF
Sbjct: 594 EQSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILF 651
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 233/723 (32%), Positives = 358/723 (49%), Gaps = 102/723 (14%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQQRG-KTAFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT ++ F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLE-FPDATFQVVLDKG 122
Query: 144 GLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E E+ + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 123 TLDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVR 182
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADK--ENSSVVLQVTSSFDHSSLDCNKNQAFGIH 252
H + + S +EP SL F V K LQ+ C + Q +
Sbjct: 183 AHQVASSQDRVSEAEPRFSLPVFAFVMTKFRPVPGSALQIFEL-------CTQEQGKPVR 235
Query: 253 EALESENQ-----TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCF 307
LES +Q R+Y Y+ QL K + ++S +L G G+ +
Sbjct: 236 --LESADQLAEAVRERQY-------YAWLCSQLRRKAGLGSVS----LDLCSGDTGEPRY 282
Query: 308 SYRAV----LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMV 363
+ V + +R+N + +FI+P+ R EWLF EEG+ + S+ RL+ V
Sbjct: 283 TLHVVDNPAVKPSRDN------HFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTV 336
Query: 364 LLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTG 423
L A M+ IQ +LS V +LAP Q+PF+ G I R V HQ S+L+G
Sbjct: 337 ALHRGQRYAGMESIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSG 396
Query: 424 PIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETER 483
++ED+ E+ W FRRL+F + +VQSEA L++D +SHR + ++
Sbjct: 397 DYVIEDVQGEDR-------W-----YFRRLIFLSNRNVVQSEARLLKD-TSHRAQKKRKK 443
Query: 484 KKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKS 543
+ + S ++ YL +H +++G L+ + +
Sbjct: 444 DRKKQRPADTSEDFPPAPGQSIDK-----SYLCCEHHKAMVAGLALLRN---PELLLETP 495
Query: 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 603
+ +V+GLG G LP+F+H+ P I+AVE+D TML +A +FGF+Q +KVHI DG+
Sbjct: 496 LTLLVVGLGGGSLPLFVHDHFPKSRIDAVEIDPTMLEVATQWFGFSQSDRMKVHIADGLD 555
Query: 604 FVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 663
++ + + D+++ DVDS D + GM+CP
Sbjct: 556 YITSLAGEAP----------------------------PHYDVIMFDVDSKDPTLGMSCP 587
Query: 664 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNL 723
FV+ FL VK L G+FI+NLV R KD V++ +K F L+ ++E +VN
Sbjct: 588 PPAFVDQVFLQKVKSILCHDGVFILNLVCRDVRLKDSVLAGLKAAFPLLYVRRIEGEVNE 647
Query: 724 VLF 726
+LF
Sbjct: 648 ILF 650
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 224/738 (30%), Positives = 360/738 (48%), Gaps = 86/738 (11%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F+S + W++FF RG +FEWY ++ L L I P ++LV GC
Sbjct: 4 LPRTAEEFSSADYWERFFRKRG-EKAFEWYGDYNSLCGVLHKYI-----KPRDKVLVVGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFD 137
GNS LSE LYD G+ +TN+D S+ V+S M +RN R D+ ++ +D T F +F
Sbjct: 58 GNSELSEQLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTG-FESGSFQ 116
Query: 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 197
V LDKG LDA+ E G L + L+EV R+L GG++VC+TLA+ HV+ L F GW
Sbjct: 117 VTLDKGTLDAMASEEDG-ALAGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGW 175
Query: 198 KMSVHAIP----QKSSSEPSLQTFMVVADKENSS---VVLQVTSSFDHSSLDCNKNQAFG 250
+ VH + ++S S +L F++V K + VL++ D +
Sbjct: 176 AVRVHCLTGQQNEESDSSFALPVFVLVCTKFRQAPPFAVLELCQGEDGAP------ARLA 229
Query: 251 IHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYR 310
E L S + R+ Y+ +L+ L+ G + +P G + + +
Sbjct: 230 SVEELLSAVKERQAYNL---MLHKLKG------GTDSSSTPSLTLCHAASGRPRYTLTIQ 280
Query: 311 AVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHA 370
A+ P + +FIVP+ R +WL+ S EG+ + S+K RL++V +
Sbjct: 281 DGPPSAKT---PRSNHFAIFIVPQGRESDWLYGSAEGRAQLASSAKFRRLVIVAMHRDQE 337
Query: 371 SASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDL 430
M +Q +LSP+V +LAP Q+PF+ G + R V+ + S+LTG VED+
Sbjct: 338 YEDMQAVQSELSPVVMELAPPGMPANQQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDV 397
Query: 431 VYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSS 490
E+ +RRL+F LVQSE+ L ++ + +KKA +
Sbjct: 398 RGED------------GYLYRRLIFMNNSQLVQSESRLQSAAAASSASKKKNKKKAKQPA 445
Query: 491 KSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIG 550
+ G + RS D G+L ++H +++G ++ ++++ + + V +++G
Sbjct: 446 ST---GAKDRSVD--------RGFLCCTHHEVMVAGLAMLG--MDAINNKDQPVSVLLVG 492
Query: 551 LGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKS 610
LG G LP F+ + +P +E VELD +L++A+ +FGF D LKV + DG+ + ++S
Sbjct: 493 LGGGGLPQFVRDFVPCARVEVVELDPVVLDVAQTWFGFQIDDRLKVTLGDGLDHITTLES 552
Query: 611 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670
D+++ DVDS D++ GM+CP FVE
Sbjct: 553 EG----------------------------ERYFDVIMFDVDSKDTTLGMSCPPPAFVET 584
Query: 671 SFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSS 730
S L V LS +GLF++NLV R A + V+ R+ VF +F +E +VN VL S
Sbjct: 585 SLLKKVYSLLSPRGLFMLNLVCRDSALRKSVLDRVHSVFPCVFSRGIEGEVNEVLLCCRS 644
Query: 731 ESCIKDNSFPEAAVQLGK 748
K ++ P+ Q K
Sbjct: 645 SGEHKPHTVPQTLQQTAK 662
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 218/727 (29%), Positives = 328/727 (45%), Gaps = 115/727 (15%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLDLCDHIHKYI-----KPVDKILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFD 137
GNS+LS +YD+ + ITN+D S V + ML +N R R DM++ MD T+M F DE+F
Sbjct: 58 GNSKLSMDMYDSEYRDITNIDISPVAVKKMLEQNARTRPDMKFLQMDATAM-TFPDESFS 116
Query: 138 VILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL---FP 191
V LDKG LDAL PE + N Y E+ R +++GG++ C++L + H+L L P
Sbjct: 117 VALDKGTLDALFVDDAPETKAVVEN-YFKEILRTMRNGGRYFCVSLLQEHILNFLVEFLP 175
Query: 192 K----FRFGWKMSVHAIPQKSSSEPSLQ--TFMVVADKENSSVVLQVTSSFDHSSLDCNK 245
+ R + V ++ +++ +++ F+V+A K S + L +K
Sbjct: 176 RHNCMLRIVHCLGVEQANKEKNADDAMKMPVFVVIATKFKS-----LPMPILEFGLGNDK 230
Query: 246 NQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGC-RFELILGGEGD 304
Q F E S S+ + S++ L G ++ G L L +
Sbjct: 231 MQRFT-------------ESSELSNAVRSVQKAALVFNGLARSSIAGHDEVTLDLYRPSE 277
Query: 305 FCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVL 364
Y +LD G Y FIVP+ R EWLF + G+ + S+K RL +V
Sbjct: 278 NTPRYSIYILDQAAARGLNKY--AAFIVPQGREIEWLFGTPSGRKKLQASAKFQRLAVVT 335
Query: 365 LDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGP 424
L +++E+Q +L V LAP QIP++ G + R + S ++G
Sbjct: 336 LHRDQVYNTLEEVQAELGDTVFSLAP--HGHIKQIPYLSLGSDVGKRETLISGFSKISGE 393
Query: 425 IIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERK 484
+E++ + RRL+F Q +VQSEAL V+T +
Sbjct: 394 FRIEEV-------------EAGGKTLRRLIFLSNQFVVQSEAL-----------VKTIKI 429
Query: 485 KASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSV 544
K K GYLA +H+ + G L ++ V K V
Sbjct: 430 KGKKERKKID-----------------FGYLACQHHLYMSVGVQLATTLQNPKKDVQKDV 472
Query: 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604
+VIGLG G L FLH +P I AVE+D ML +AE YF QDK V I DG+ F
Sbjct: 473 --LVIGLGGGGLCSFLHAALPQSRITAVEIDPIMLEVAEQYFELKQDKRFHVVIDDGLAF 530
Query: 605 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA 664
V C + D ++ DVDS D S GM+CP
Sbjct: 531 VE-----------------------------RCRNEDIHFDAVLFDVDSKDLSLGMSCPP 561
Query: 665 ADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLV 724
F+ LL +K+ + +GLF++NLV R + K I+ ++ VF + +LEED+N V
Sbjct: 562 QGFLAHDVLLHIKEIIGPKGLFMLNLVCRDETLKTEAIANLQKVFPAVCSYKLEEDINEV 621
Query: 725 LFGLSSE 731
++ + E
Sbjct: 622 VYCANDE 628
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 211/729 (28%), Positives = 332/729 (45%), Gaps = 119/729 (16%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ +L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLELCDQIHKYI-----KPADRILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFD 137
GNS+LS +YD GF ITN+D S + + ML N + R +M++ MD T+M F DE+F
Sbjct: 58 GNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAM-TFPDESFS 116
Query: 138 VILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL---FP 191
V LDKG LDAL EPE + N Y E+ R +++GG++V ++L + H+L L P
Sbjct: 117 VSLDKGTLDALFADDEPETRAVVEN-YFKEILRTMRNGGRYVGISLLQEHILNFLLDFLP 175
Query: 192 KFRFGWKMSVHAIPQKSSSEP-------SLQTFMVVADKENSSVVLQVTSSFDHSSLDCN 244
K ++ VH + + +++ +L F+VVA K S + + F + +
Sbjct: 176 KHNCMLRI-VHCLGVEQANKEKNADDALTLPVFVVVATKFKSLPMPVLEFGFGN-----D 229
Query: 245 KNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMK-NLSPGCRFELILGGEG 303
K Q F L S + S++ L G + N++ + L
Sbjct: 230 KMQRFTTVSELNSA-------------VSSVQKAALVCNGLARSNIAGHNEVIMDLHRPS 276
Query: 304 DFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMV 363
+ Y +LD G Y FIVP+ R EW+FS+ G+ + +S+ RL +V
Sbjct: 277 EQTPRYTIHILDKPPARGLGKY--AAFIVPQGREVEWIFSTPAGRKKLQDSANFQRLAVV 334
Query: 364 LLDTSHASASMDEIQKDLSPLVKQLAP-GKDDQGAQIPFMMAGDGIKHRNVVHQATSSLT 422
L +++DE++++L+ +K L+P G D QIP++ G + R + S ++
Sbjct: 335 TLHRDQVYSTLDEVKQELADSIKNLSPAGLTD---QIPYLSLGSDVGKRETLICGFSKIS 391
Query: 423 GPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETE 482
G +E++ + RRL+F Q +VQSEAL V+T
Sbjct: 392 GDFRIEEV-------------EANGKTLRRLIFLSNQFVVQSEAL-----------VKTV 427
Query: 483 RKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGK 542
+ K K GYLA +H+ + G L ++ V K
Sbjct: 428 KIKGKKDRKKID-----------------FGYLACQHHLYMSVGVQLATTVQHPKRDVEK 470
Query: 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI 602
V V +G G FLH +P I AVE+D ML +AE YF QDK V I DG+
Sbjct: 471 DVLVVGLGGGGLC--SFLHAALPQARITAVEIDPIMLEVAEQYFELKQDKRFHVVIDDGL 528
Query: 603 KFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC 662
FV C + D ++ DVDS D S GM+C
Sbjct: 529 DFVE-----------------------------RCRNEDIHFDAVLFDVDSKDLSLGMSC 559
Query: 663 PAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVN 722
P F+ L +K+ + +GLF++NLV R ++ + ++ + VF + +LEED+N
Sbjct: 560 PPQSFLATKILQHIKEIIGPKGLFMLNLVCRDESLRTEALNNLHKVFPAVCSYKLEEDIN 619
Query: 723 LVLFGLSSE 731
+++ + E
Sbjct: 620 EIIYCANDE 628
|
Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 215/445 (48%), Gaps = 75/445 (16%)
Query: 328 GVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMDEIQKDLSPLVKQ 387
+FI+P R EWLF SE+G+ + S RLI+V L M IQ +LS V +
Sbjct: 299 AIFIIPHGRETEWLFGSEQGRKQLAGSVGFNRLIIVALHRDQQYTDMKAIQSELSAKVLE 358
Query: 388 LAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSED 447
LAP QIPF+ AG+ I R + H+ S +G +VED+ + +
Sbjct: 359 LAPPGLPDNQQIPFLSAGEDIGSRTIQHRGKSEFSGEYVVEDVRGDG------------N 406
Query: 448 LKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQ 507
+RRL+F Q +VQSEA L+ + ++KK K + T R D S
Sbjct: 407 SSYRRLIFLSNQNVVQSEARLLPISTHIGQKKRKDKKKQQKPVKDLEQPTITRIDKS--- 463
Query: 508 LKVYHGYLASSYHMGIISGFTLISS---YLESVASVGKSVKAVVIGLGAGLLPMFLHECM 564
YL +H +ISG L+ + E ASV +VIGLG G L +F+H+
Sbjct: 464 ------YLCCEHHKAMISGLALLPNPGLLPECQASV------LVIGLGGGSLSLFIHDYF 511
Query: 565 PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 624
P +E VE+D ++L++A ++F F QD+ +KVH+ DG+ VH N
Sbjct: 512 PGSRVEVVEIDPSVLDVASNWFNFCQDERMKVHLADGL-----------------VHINS 554
Query: 625 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG 684
+ ++N +C D+++ DVDS D S GM+CP FVE FL V + L+ G
Sbjct: 555 L-ADNGEAC----------YDVIMFDVDSKDPSVGMSCPPPAFVEKMFLQNVHNILNANG 603
Query: 685 LFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAV 744
+FI+NLV R + V++ + VF ++ +++E+VN +LF C ++
Sbjct: 604 VFILNLVCRDTDLRLKVLNVLHEVFPLIYAQKIDEEVNEILF------CRPNSE------ 651
Query: 745 QLGKLVKFQHLEISQSIMDAAKKIR 769
KF LE+ +S + KK+R
Sbjct: 652 -----RKFSSLELKESAKNLEKKLR 671
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 12 SSSATDLLQTLGDFTSKENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPP 69
S+ +L + + + WD+ + +G DS +EW+ ++ RD L P P
Sbjct: 7 SAQVPELPEKNCGYREVQYWDQRY--QGAADSAPYEWFGDFSCFRDLL-----EPELRPL 59
Query: 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129
+ILV GCGNS LS L+ GF +T+VD+S VV++ M R + +RW MD+ ++
Sbjct: 60 DRILVLGCGNSALSYELFLGGFPDVTSVDYSSVVVAAMRARYAHVPT-LRWETMDVRALG 118
Query: 130 VFMDETFDVILDKGGLDALMEPE 152
F +FDV+L+KG LDAL+ E
Sbjct: 119 -FPSGSFDVVLEKGTLDALLTGE 140
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 11/126 (8%)
Query: 29 ENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
E WD+ + +G DS ++W+ ++ R L P P +ILV GCGNS LS L
Sbjct: 24 EYWDQRY--QGAADSAPYDWFGDFSSFRALL-----EPELRPEDRILVLGCGNSALSYEL 76
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146
+ GF +T+VD+S VV++ M R+ +RW MD+ + F +FDV+L+KG LD
Sbjct: 77 FLGGFPNVTSVDYSSVVVAAMQARHAH-VPQLRWETMDVRKLD-FPSASFDVVLEKGTLD 134
Query: 147 ALMEPE 152
AL+ E
Sbjct: 135 ALLAGE 140
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 15/143 (10%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
WD+ + +EW+ ++ R L P P +ILV GCGNS LS L+ G
Sbjct: 26 WDQRYKDAADSGPYEWFGDFASFRALL-----EPELCPEDRILVLGCGNSALSYELFLGG 80
Query: 91 FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALM- 149
F +T+VD+S VV++ M R S +RW MD+ ++ F +FDV+L+KG LDA++
Sbjct: 81 FPNVTSVDYSPVVVAAMQVRYAHVPS-LRWETMDVRALD-FPSGSFDVVLEKGTLDAMLA 138
Query: 150 -EPEL------GHKLGNQYLSEV 165
EP+ G +Q LSEV
Sbjct: 139 GEPDPWNVSSEGVHTVDQVLSEV 161
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 772 | ||||||
| 224060357 | 779 | predicted protein [Populus trichocarpa] | 0.992 | 0.983 | 0.710 | 0.0 | |
| 359477926 | 782 | PREDICTED: methyltransferase-like protei | 0.984 | 0.971 | 0.692 | 0.0 | |
| 255554026 | 761 | S-adenosylmethionine-dependent methyltra | 0.984 | 0.998 | 0.701 | 0.0 | |
| 356512463 | 761 | PREDICTED: methyltransferase-like protei | 0.977 | 0.992 | 0.658 | 0.0 | |
| 356512461 | 762 | PREDICTED: methyltransferase-like protei | 0.975 | 0.988 | 0.656 | 0.0 | |
| 449432402 | 752 | PREDICTED: methyltransferase-like protei | 0.971 | 0.997 | 0.676 | 0.0 | |
| 34148076 | 763 | putative spermine/spermidine synthase [G | 0.979 | 0.990 | 0.649 | 0.0 | |
| 356525225 | 763 | PREDICTED: methyltransferase-like protei | 0.975 | 0.986 | 0.649 | 0.0 | |
| 298205206 | 748 | unnamed protein product [Vitis vinifera] | 0.924 | 0.954 | 0.650 | 0.0 | |
| 297826625 | 762 | hypothetical protein ARALYDRAFT_902209 [ | 0.974 | 0.986 | 0.632 | 0.0 |
| >gi|224060357|ref|XP_002300159.1| predicted protein [Populus trichocarpa] gi|222847417|gb|EEE84964.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/785 (71%), Positives = 641/785 (81%), Gaps = 19/785 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKK K SS +S +LL TLGDFTSKENWDKFFTIRG DSFEWYAEW +L PL+SL
Sbjct: 1 MGKKDKQ--SSKASTEELLTTLGDFTSKENWDKFFTIRGTDDSFEWYAEWTELHHPLLSL 58
Query: 61 IG------APTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD 114
+ + +SSP +ILVPGCGNS+LSE+LYDAGF ITN+DFSKVVISDMLRRNVRD
Sbjct: 59 LAGNDENHSSSSSPLLKILVPGCGNSKLSENLYDAGFKEITNIDFSKVVISDMLRRNVRD 118
Query: 115 RSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 174
R MRWRVMDMT MQ+ DE+FDV+LDKGGLDALMEPELG KLGNQYLSEVKR+L GK
Sbjct: 119 RPGMRWRVMDMTQMQL-ADESFDVVLDKGGLDALMEPELGPKLGNQYLSEVKRVLNFEGK 177
Query: 175 FVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTS 234
F+CLTLAESHVL LLF KFRFGWKMSV AIPQK SS+P L+TFMVVA+KENSS + +T+
Sbjct: 178 FICLTLAESHVLALLFSKFRFGWKMSVQAIPQKPSSKPDLRTFMVVAEKENSSALHFITA 237
Query: 235 SFDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCR 294
FDHSSLDC NQA G+HEALE+ENQ R+EYS G DILYSLEDL +GAKGD+ LS G R
Sbjct: 238 LFDHSSLDCIGNQAIGLHEALENENQIRKEYSIGPDILYSLEDLLIGAKGDLSKLSLGRR 297
Query: 295 FELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVES 354
F+L LGG GD FSY+A++LDA+E+S F Y+CGVFIVPKTRAHEWLFSSEEGQWLVVES
Sbjct: 298 FQLTLGGNGDSRFSYKAIVLDAKESSSQFTYHCGVFIVPKTRAHEWLFSSEEGQWLVVES 357
Query: 355 SKAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVV 414
SKAARLIM+++D+SH +ASMD+IQKDLSPLVKQLAPGKDD AQIPFMMAGDGIK R V
Sbjct: 358 SKAARLIMIIMDSSHNNASMDDIQKDLSPLVKQLAPGKDDNSAQIPFMMAGDGIKERKTV 417
Query: 415 HQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSS 474
H+ TSSLTG IIVED+VYENV + SR +PS DL FRRLVFQR +GLVQSEALL RD SS
Sbjct: 418 HKVTSSLTGSIIVEDVVYENVADDVSRPFPSSDLIFRRLVFQRAEGLVQSEALLTRDESS 477
Query: 475 HRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYL 534
H+ E KK +SSSKSK+KG+Q+R+D S LKVYH Y+ASSYHMGI+SGFTL+SSYL
Sbjct: 478 HKI---VEEKKKTSSSKSKKKGSQKRNDASSKILKVYHDYMASSYHMGIVSGFTLMSSYL 534
Query: 535 ESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSL 594
ESV S GK+V AV+IGLGAGLLPMFLH CMP + IE VELD +L+LA DYFGF +D+ L
Sbjct: 535 ESVESTGKTVNAVIIGLGAGLLPMFLHGCMPSLQIEVVELDAVVLSLARDYFGFAEDERL 594
Query: 595 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSC---NGNCTASNA----RVDIL 647
KVHI DGI+FVRE+K+ + D + +HG E S +T+ +G+ + + RVDIL
Sbjct: 595 KVHIADGIRFVREVKNFAVADGLPAIHGIEDASGSTKPSPDESGSVSYTEGRGRPRVDIL 654
Query: 648 IIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKM 707
IIDVDS DSSSGM CPAADFVE SFLLTVKD LSEQGLFIVNLVSRS A KD +ISRMK
Sbjct: 655 IIDVDSSDSSSGMACPAADFVEESFLLTVKDTLSEQGLFIVNLVSRSPAVKDTIISRMKA 714
Query: 708 VFNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKK 767
VFNHLF LQLEED+N+VLFGL SE C+K++ FPEAA QL KL+KF+H EI QSI+D+ KK
Sbjct: 715 VFNHLFSLQLEEDINMVLFGLCSEVCLKEDCFPEAACQLDKLLKFKHQEIGQSIIDSTKK 774
Query: 768 IRCLK 772
IR LK
Sbjct: 775 IRRLK 779
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477926|ref|XP_002263181.2| PREDICTED: methyltransferase-like protein 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/794 (69%), Positives = 641/794 (80%), Gaps = 34/794 (4%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
M KKK+++ +LLQTLGDFTSKENWDKFFTIRG DSFEWYAEWPQL+DPL+S
Sbjct: 1 MSKKKQSEE-------ELLQTLGDFTSKENWDKFFTIRGSDDSFEWYAEWPQLKDPLLSH 53
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ + PP QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR R DMRW
Sbjct: 54 LSSTPPPPPLQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRSRPDMRW 113
Query: 121 RVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
RVMD+TSMQ F D +FD ILDKGGLDALMEPELG KLG YL+EVKR+LKSGGKF+ LTL
Sbjct: 114 RVMDITSMQ-FPDGSFDAILDKGGLDALMEPELGPKLGKMYLTEVKRVLKSGGKFIGLTL 172
Query: 181 AESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSS 240
AESHVLGLLF KFRFGWKMS+H + QK S++PSL TFMVVA+KE+S+V+ Q+T+SF SS
Sbjct: 173 AESHVLGLLFSKFRFGWKMSIHVVSQKPSNKPSLLTFMVVAEKESSTVLHQITTSFARSS 232
Query: 241 LDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILG 300
LD N NQA G++EA+E+EN+ RREYS+GSD++YSLEDLQLGAKGD+ LS G RF+L LG
Sbjct: 233 LDLNGNQARGLYEAIENENRIRREYSNGSDLIYSLEDLQLGAKGDLLELSQGRRFQLTLG 292
Query: 301 GEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARL 360
FSYRAV+LDAR+ + PF+Y+CGVF+VPKTRAHEWLFSSEEGQW+VVESSKAARL
Sbjct: 293 EYEGSRFSYRAVVLDARQMTEPFLYHCGVFLVPKTRAHEWLFSSEEGQWMVVESSKAARL 352
Query: 361 IMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSS 420
IMVLLDTSH +ASMD+IQKDLSPLVK+LAP ++ GAQIPFM+AGDGIK R +VHQ TS+
Sbjct: 353 IMVLLDTSHTNASMDDIQKDLSPLVKRLAPANNNTGAQIPFMIAGDGIKQRKIVHQVTST 412
Query: 421 LTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVE 480
LTG I VED+VYENVD + S + PS+ L FRRL FQR +GLVQSEALL R+G + + E
Sbjct: 413 LTGLITVEDVVYENVDGKVSHLVPSKALLFRRLTFQRAEGLVQSEALLTREGGTQKIVSE 472
Query: 481 TERKKASSSSKSKRKGTQRRSDD-----SGNQLKVYHGYLASSYHMGIISGFTLISSYLE 535
TERKK+ SSSKS++KG Q++ D S N LKVYH YLASSYHMGIISGF LISSYLE
Sbjct: 473 TERKKSISSSKSRKKGNQKKIDSLAIHGSSNNLKVYHNYLASSYHMGIISGFMLISSYLE 532
Query: 536 SVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK 595
SVAS G++VKAVVIGLGAGLLPMFLH CMPF+ IE VELD +LNLA +YFGF +DK LK
Sbjct: 533 SVASTGRTVKAVVIGLGAGLLPMFLHGCMPFLDIEVVELDPVILNLARNYFGFCEDKHLK 592
Query: 596 VHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTR--SCNGNCTASNA------RVDIL 647
VHI DGI+FVR + A D +S H N + S NG+CTAS+A + DIL
Sbjct: 593 VHIADGIQFVRGV----AADGVSGKHVNNDAQCDAECPSSNGSCTASHAERKVISKFDIL 648
Query: 648 IIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKM 707
IIDVDS DSSSGMTCPAADFV+ SFLLTVKD+LS+QGLF+VNLVSRS+A K+MV+SRMK
Sbjct: 649 IIDVDSSDSSSGMTCPAADFVDESFLLTVKDSLSDQGLFVVNLVSRSRAIKNMVVSRMKA 708
Query: 708 VFNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLV---------KFQHLEIS 758
VF+HLFCLQLEEDVN VLF L +E CIK+ F EAAV+L KL+ K + E+S
Sbjct: 709 VFSHLFCLQLEEDVNEVLFALRTEDCIKEEQFGEAAVELEKLLSWDRNDLPEKSKPPEMS 768
Query: 759 QSIMDAAKKIRCLK 772
Q I D+ +KI+CLK
Sbjct: 769 QIIRDSTEKIKCLK 782
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554026|ref|XP_002518053.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223542649|gb|EEF44186.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/773 (70%), Positives = 642/773 (83%), Gaps = 13/773 (1%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGK+ K QS SS+ DLL+TLGDFTSKENWDKFFTIRG DSFEWYAEWPQLR PL+SL
Sbjct: 1 MGKRDKQQSQPSSN--DLLETLGDFTSKENWDKFFTIRGADDSFEWYAEWPQLRQPLLSL 58
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
S P QIL+PGCGNSRLSE+LYD GF ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 59 FANDDS--PVQILMPGCGNSRLSENLYDLGFKDITNIDFSKVVISDMLRRNVRDRPGMRW 116
Query: 121 RVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
RVMDMT MQ F DETFDV+LDKGGLDALMEPELG KLG +YLSEV+R+LK GGKF+CLTL
Sbjct: 117 RVMDMTDMQ-FADETFDVVLDKGGLDALMEPELGPKLGTKYLSEVQRVLKFGGKFICLTL 175
Query: 181 AESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSS 240
AESHVLGLLF KFRFGWK+++HAIP +S+PSL+TFMV A+K N S + + SSFDH +
Sbjct: 176 AESHVLGLLFSKFRFGWKLNIHAIPWNLASKPSLRTFMVAAEKGNLSDLHLIMSSFDHYT 235
Query: 241 LDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILG 300
+ C+ NQA +HEALE+EN+ R+EYS GSDILYSLEDL+LGAKGD+ LS G R +L LG
Sbjct: 236 VGCSGNQAASLHEALENENRIRKEYSSGSDILYSLEDLRLGAKGDLTKLSQGRRIQLTLG 295
Query: 301 GEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARL 360
G+G F+Y+AVLLDA+ENS PF ++CG+FIVPKTRAHEWLF SEEGQW+VVESS+AARL
Sbjct: 296 GQGGSRFTYKAVLLDAKENSAPFSFHCGIFIVPKTRAHEWLFCSEEGQWMVVESSQAARL 355
Query: 361 IMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSS 420
IMV+LD+SH S++MD+IQKDLSPLVKQLAPG+ D GAQIPFMMAGDGIK RNVVH+ TSS
Sbjct: 356 IMVILDSSHTSSTMDDIQKDLSPLVKQLAPGEGDNGAQIPFMMAGDGIKQRNVVHEVTSS 415
Query: 421 LTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVE 480
LTG IIVED+VYE+VD + S + PS+DL FRRLVFQRT+GLVQSE LL RD ++
Sbjct: 416 LTGSIIVEDVVYEDVDDDVSCLLPSKDLIFRRLVFQRTEGLVQSEGLLKRDEFCNKIS-G 474
Query: 481 TERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASV 540
++KK +SSSKSK++G ++++D+S NQLKVYH YLASSYH GIISGF LISSYLESV S
Sbjct: 475 IDKKKKTSSSKSKKRGNKKQNDESSNQLKVYHDYLASSYHTGIISGFMLISSYLESVESA 534
Query: 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 600
G +V VV+GLGAGLLPMFLH C+PF+ +E VELD +L LA+DYFGF +DK LKVHITD
Sbjct: 535 GNTVNTVVVGLGAGLLPMFLHGCLPFLHLEVVELDPVVLALAKDYFGFIEDKHLKVHITD 594
Query: 601 GIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSG 659
GI+FVRE+K+ + D NE+ S +++ C + S++ +D+LIIDVDS DSSSG
Sbjct: 595 GIRFVREVKNYAPADR------NEVASGSSKPCQNHAEGSSSPGIDVLIIDVDSSDSSSG 648
Query: 660 MTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEE 719
MTCPAADFVE SFLLTVKD+LSE+GLF+VNLVSRS A KDMVISRMK VF+HLF LQLEE
Sbjct: 649 MTCPAADFVEESFLLTVKDSLSEKGLFVVNLVSRSSAIKDMVISRMKTVFSHLFSLQLEE 708
Query: 720 DVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 772
DVN+VLFGL SESC+K++SFPEAA+QL KL+KF+H EI Q ++D KKI+CLK
Sbjct: 709 DVNMVLFGLCSESCMKEDSFPEAALQLEKLLKFKHPEIGQKVIDTTKKIKCLK 761
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512463|ref|XP_003524938.1| PREDICTED: methyltransferase-like protein 13-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/778 (65%), Positives = 612/778 (78%), Gaps = 23/778 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWDKFFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKGKKKGSPE----DILETLGDFTSKENWDKFFTLRG--DSFEWYAEWPNLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ T P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 55 L--KTVPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVISDMLRRNVRDRPLMRW 112
Query: 121 RVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
R+MDMT+MQ F DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTL
Sbjct: 113 RIMDMTAMQ-FEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTL 171
Query: 181 AESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSS 240
AESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SS
Sbjct: 172 AESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSS 231
Query: 241 LDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILG 300
L CN Q G+HEAL++ENQ R +YS GS++LYS+EDLQ ++ LS G R +L LG
Sbjct: 232 LHCNSKQVSGLHEALQNENQIREKYSSGSNLLYSVEDLQ----EELTKLSQGRRLQLTLG 287
Query: 301 GEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARL 360
G+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SS+AARL
Sbjct: 288 GQGYSTFSYRAVILDAEEQASPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSEAARL 347
Query: 361 IMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSS 420
IMV LD SH+ SM+EIQKDLSPLV QLAP +++ GA+IPFMMA +GIK RN++H+ TSS
Sbjct: 348 IMVYLDASHSDTSMEEIQKDLSPLVTQLAPAENENGAKIPFMMASEGIKERNIIHKVTSS 407
Query: 421 LTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVE 480
LTG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + S + E
Sbjct: 408 LTGSIIVEDVIYENVDSEVSCIFPSRELVFRRLVFERAANLVQSEALLKDEQSPTKLVSE 467
Query: 481 TERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASV 540
T RKK ++SSKS++ G+QR S + +QL VYHGY+ASSYH GIISGFTLISSY+E+VAS
Sbjct: 468 TGRKKNNASSKSRKSGSQRHSIGASSQLTVYHGYVASSYHTGIISGFTLISSYMENVASS 527
Query: 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 600
GK VKAV+IGLGAGLL MFLH C+PF+ IE VELD ++++A DYF F +DK LKVH+ D
Sbjct: 528 GKMVKAVIIGLGAGLLSMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKRLKVHVAD 587
Query: 601 GIKFVREMKSSSATDEMSVVHGNEITSNNTRSC-NGNCTASNA-----RVDILIIDVDSP 654
GI+FVRE+ SS A +HG +NT S N + T S+A +VDI+I+DVDS
Sbjct: 588 GIQFVREIDSSGAPQ----IHGKSNDPSNTESALNASSTVSHAGVKVTKVDIIIVDVDSS 643
Query: 655 DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFC 714
D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLFC
Sbjct: 644 DPSSGLTCPAPDFLDESFLETVKDKLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLFC 703
Query: 715 LQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 772
LQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR LK
Sbjct: 704 LQLDEDVNEVHFALKSESCIEDSCFSEASLKLHKLLEFKHPEIGQNIINATKKIRHLK 761
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512461|ref|XP_003524937.1| PREDICTED: methyltransferase-like protein 13-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/781 (65%), Positives = 611/781 (78%), Gaps = 28/781 (3%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWDKFFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKGKKKGSPE----DILETLGDFTSKENWDKFFTLRG--DSFEWYAEWPNLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ T P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVISDMLRRNVRDR MRW
Sbjct: 55 L--KTVPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVISDMLRRNVRDRPLMRW 112
Query: 121 RVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
R+MDMT+MQ F DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTL
Sbjct: 113 RIMDMTAMQ-FEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTL 171
Query: 181 AESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSS 240
AESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SS
Sbjct: 172 AESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSS 231
Query: 241 LDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILG 300
L CN Q G+HEAL++ENQ R +YS GS++LYS+EDLQ ++ LS G R +L LG
Sbjct: 232 LHCNSKQVSGLHEALQNENQIREKYSSGSNLLYSVEDLQ----EELTKLSQGRRLQLTLG 287
Query: 301 GEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARL 360
G+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SS+AARL
Sbjct: 288 GQGYSTFSYRAVILDAEEQASPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSEAARL 347
Query: 361 IMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSS 420
IMV LD SH+ SM+EIQKDLSPLV QLAP +++ GA+IPFMMA +GIK RN++H+ TSS
Sbjct: 348 IMVYLDASHSDTSMEEIQKDLSPLVTQLAPAENENGAKIPFMMASEGIKERNIIHKVTSS 407
Query: 421 LTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVE 480
LTG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + S + E
Sbjct: 408 LTGSIIVEDVIYENVDSEVSCIFPSRELVFRRLVFERAANLVQSEALLKDEQSPTKLVSE 467
Query: 481 TERKKASSSSKSKRKGTQRRSDDSGNQ---LKVYHGYLASSYHMGIISGFTLISSYLESV 537
T RKK ++SSKS++ G+QR S GN L VYHGY+ASSYH GIISGFTLISSY+E+V
Sbjct: 468 TGRKKNNASSKSRKSGSQRHS--IGNYFPLLTVYHGYVASSYHTGIISGFTLISSYMENV 525
Query: 538 ASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 597
AS GK VKAV+IGLGAGLL MFLH C+PF+ IE VELD ++++A DYF F +DK LKVH
Sbjct: 526 ASSGKMVKAVIIGLGAGLLSMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKRLKVH 585
Query: 598 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSC-NGNCTASNA-----RVDILIIDV 651
+ DGI+FVRE+ SS A +HG +NT S N + T S+A +VDI+I+DV
Sbjct: 586 VADGIQFVREIDSSGAPQ----IHGKSNDPSNTESALNASSTVSHAGVKVTKVDIIIVDV 641
Query: 652 DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNH 711
DS D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+H
Sbjct: 642 DSSDPSSGLTCPAPDFLDESFLETVKDKLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSH 701
Query: 712 LFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCL 771
LFCLQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR L
Sbjct: 702 LFCLQLDEDVNEVHFALKSESCIEDSCFSEASLKLHKLLEFKHPEIGQNIINATKKIRHL 761
Query: 772 K 772
K
Sbjct: 762 K 762
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432402|ref|XP_004133988.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] gi|449517108|ref|XP_004165588.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/761 (67%), Positives = 605/761 (79%), Gaps = 11/761 (1%)
Query: 13 SSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQI 72
+ A ++LQTLGDFTSKENWD FFTIRG GD+FEWYAEWP+L+DPLIS + + SP PQI
Sbjct: 2 AKADNILQTLGDFTSKENWDNFFTIRGHGDAFEWYAEWPELKDPLISHLPTLSKSPSPQI 61
Query: 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM 132
LVPGCGNS LSE LYDAGF ITN+DFSKV ISDMLRRNVR+R DMRWRVMDMT+MQ F
Sbjct: 62 LVPGCGNSSLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTNMQ-FT 120
Query: 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPK 192
++TFD ++DKGGLDALMEPE+G KLG+QYLSEVKR+LK GGKF+CLTLAESHVLGLLFPK
Sbjct: 121 NDTFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPK 180
Query: 193 FRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIH 252
FRFGWKMS+H IP K S+PS +TFMVV +K+ S+ Q+ SS + SSLD +Q +
Sbjct: 181 FRFGWKMSIHVIPPKPPSKPSFRTFMVVVEKDESTAWHQIESSLNFSSLDSRGDQTRELV 240
Query: 253 EALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAV 312
++LE+EN+ R +YS G D+L+SLEDLQLGAKGD++ L G R + LGG+G FSYRAV
Sbjct: 241 QSLENENRIREKYSSGDDLLFSLEDLQLGAKGDLQKLHRGRRVQFTLGGQGTSIFSYRAV 300
Query: 313 LLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASA 372
LLDARE+SGPF Y CGVFIVPKTRAHEWLFSSEEGQW+VVESSKAARLIMVLLD + + A
Sbjct: 301 LLDAREHSGPFSYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMVLLDETQSGA 360
Query: 373 SMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVY 432
+MD IQKDLSPLVKQLAPG+DD G+QIPFMMA DGIK RN V Q TSSLTG I+VED+ Y
Sbjct: 361 NMDAIQKDLSPLVKQLAPGEDDSGSQIPFMMASDGIKERNCVFQGTSSLTGSIVVEDVKY 420
Query: 433 ENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKS 492
E+V + SRI+PS DL FRRLVFQRT+ LVQSEALL R+ + + +RKK+ +SSKS
Sbjct: 421 EHVSGDASRIFPSGDLIFRRLVFQRTESLVQSEALLTRERVDDKVSGQMDRKKSHASSKS 480
Query: 493 KRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLG 552
K KG +R + +S +Q+K YHGYLASSYH GIISGF LIS YL SVAS GK V AVVIGLG
Sbjct: 481 KNKGKKRLNKESSDQMKAYHGYLASSYHSGIISGFMLISQYLGSVASAGKMVNAVVIGLG 540
Query: 553 AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSS 612
AGLLPMFL CM F+ IE VELD +LNLA DYF FT+D +LKVHI DGI+FVRE ++
Sbjct: 541 AGLLPMFLRACMSFLHIEVVELDSMILNLARDYFDFTEDANLKVHIADGIQFVREFRNYG 600
Query: 613 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672
+G+ + +N S N +VDILIIDVD+ DSSSGMTCPAADFVE SF
Sbjct: 601 T-------NGSTVALDNGNSS--QVEQGNKKVDILIIDVDATDSSSGMTCPAADFVEESF 651
Query: 673 LLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSES 732
LL VKDALSEQGLFI+NLV+RS +MV++RMK VFNHLF LQLEEDVN VLF L S+
Sbjct: 652 LLAVKDALSEQGLFIINLVTRSPTVNNMVVTRMKGVFNHLFSLQLEEDVNEVLFALPSDL 711
Query: 733 CIK-DNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 772
CIK D+ F EA++QL KL+ +HLE+ QSI+DA KIRCLK
Sbjct: 712 CIKEDHLFNEASLQLEKLLNLKHLEMRQSIVDATTKIRCLK 752
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|34148076|gb|AAQ62585.1| putative spermine/spermidine synthase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/779 (64%), Positives = 605/779 (77%), Gaps = 23/779 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWD FFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKAKKKGSPE----DILETLGDFTSKENWDNFFTLRG--DSFEWYAEWPHLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVI DMLRRNVRDR MRW
Sbjct: 55 LKTIPLPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVIGDMLRRNVRDRPLMRW 114
Query: 121 RVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
RVMDMT MQ F DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTL
Sbjct: 115 RVMDMTVMQ-FEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTL 173
Query: 181 AESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSS 240
AESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SS
Sbjct: 174 AESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSS 233
Query: 241 LDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILG 300
L N Q G+HEAL++ENQ R +YS GSDILYS+EDLQ ++ LS G R +L LG
Sbjct: 234 LHSNSKQVSGLHEALQNENQIREKYSSGSDILYSVEDLQ----EELTKLSQGRRLQLTLG 289
Query: 301 GEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARL 360
G+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SSKAARL
Sbjct: 290 GQGYSTFSYRAVILDAEEQADPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSKAARL 349
Query: 361 IMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSS 420
IMV LD SH+ SM+EIQKDLSPLV QLAP ++ GA+IPFMMA +GIK RN++H+ TSS
Sbjct: 350 IMVYLDASHSDTSMEEIQKDLSPLVTQLAPAENGNGAKIPFMMASEGIKERNIIHKVTSS 409
Query: 421 LTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVE 480
LTG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + + E
Sbjct: 410 LTGSIIVEDVIYENVDSEVSCIFPSGELMFRRLVFERAANLVQSEALLKDEQLPTKLVSE 469
Query: 481 TERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASV 540
T +KK ++SSKS++ G+ R S + +QL VYHGY+ASSYH GIISGF LISS++E+VAS
Sbjct: 470 TGKKKTNASSKSRKSGSWRDSVGASSQLTVYHGYVASSYHTGIISGFMLISSHMENVASS 529
Query: 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 600
GK VKAV+IGLGAGLLPMFLH C+PF+ IE VELD ++++A DYF F +DK +KVHI D
Sbjct: 530 GKMVKAVIIGLGAGLLPMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKHVKVHIAD 589
Query: 601 GIKFVREMKSSSATDEMSVVHG--NEITSNNTRSCNGNCTASNA-----RVDILIIDVDS 653
GI+FVRE+ SS A +HG N+ + +T + N + S+A +VDI+I+DVDS
Sbjct: 590 GIQFVREIDSSGAAQ----IHGKSNDPSYTDT-ALNASSAVSHADVEVTKVDIIIVDVDS 644
Query: 654 PDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLF 713
D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLF
Sbjct: 645 SDPSSGLTCPAPDFLDESFLETVKDRLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLF 704
Query: 714 CLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 772
CLQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR LK
Sbjct: 705 CLQLDEDVNEVHFALKSESCIEDSCFSEASLKLDKLLEFKHPEIGQNIINATKKIRRLK 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525225|ref|XP_003531227.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/776 (64%), Positives = 603/776 (77%), Gaps = 23/776 (2%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MG K K + S D+L+TLGDFTSKENWD FFT+RG DSFEWYAEWP LRDPL+SL
Sbjct: 1 MGSKAKKKGSPE----DILETLGDFTSKENWDNFFTLRG--DSFEWYAEWPHLRDPLLSL 54
Query: 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120
+ P Q+LVPGCGNSRLSEHLYDAG ITN+DFSKVVI DMLRRNVRDR MRW
Sbjct: 55 LKTIPLPLPLQLLVPGCGNSRLSEHLYDAGHTAITNIDFSKVVIGDMLRRNVRDRPLMRW 114
Query: 121 RVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
RVMDMT MQ F DE+F ++DKGGLDALMEPELG KLGNQYLSEVKR+LK GGKFVCLTL
Sbjct: 115 RVMDMTVMQ-FEDESFGAVIDKGGLDALMEPELGPKLGNQYLSEVKRVLKPGGKFVCLTL 173
Query: 181 AESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSS 240
AESHVL LLF KFR GWKMSV AIP KSS +PSLQTFMVV +KE S++V Q+TS +SS
Sbjct: 174 AESHVLNLLFSKFRLGWKMSVDAIPLKSSGKPSLQTFMVVVEKELSTLVHQITSLLHNSS 233
Query: 241 LDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILG 300
L N Q G+HEAL++ENQ R +YS GSDILYS+EDLQ ++ LS G R +L LG
Sbjct: 234 LHSNSKQVSGLHEALQNENQIREKYSSGSDILYSVEDLQ----EELTKLSQGRRLQLTLG 289
Query: 301 GEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARL 360
G+G FSYRAV+LDA E + PF Y+CGVFIVPKTRA EWLF SEEGQW+VV SSKAARL
Sbjct: 290 GQGYSTFSYRAVILDAEEQADPFTYHCGVFIVPKTRAREWLFYSEEGQWMVVRSSKAARL 349
Query: 361 IMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSS 420
IMV LD SH+ SM+EIQKDLSPLV QLAP ++ GA+IPFMMA +GIK RN++H+ TSS
Sbjct: 350 IMVYLDASHSDTSMEEIQKDLSPLVTQLAPAENGNGAKIPFMMASEGIKERNIIHKVTSS 409
Query: 421 LTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVE 480
LTG IIVED++YENVD E S I+PS +L FRRLVF+R LVQSEALL + + E
Sbjct: 410 LTGSIIVEDVIYENVDSEVSCIFPSGELMFRRLVFERAANLVQSEALLKDEQLPTKLVSE 469
Query: 481 TERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASV 540
T +KK ++SSKS++ G+ R S + +QL VYHGY+ASSYH GIISGF LISS++E+VAS
Sbjct: 470 TGKKKNNASSKSRKSGSWRDSVGASSQLTVYHGYVASSYHTGIISGFMLISSHMENVASS 529
Query: 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 600
GK VKAV+IGLGAGLLPMFLH C+PF+ IE VELD ++++A DYF F +DK +KVHI D
Sbjct: 530 GKMVKAVIIGLGAGLLPMFLHGCIPFLEIETVELDPMIVDIARDYFSFVEDKHVKVHIAD 589
Query: 601 GIKFVREMKSSSATDEMSVVHG--NEITSNNTRSCNGNCTASNA-----RVDILIIDVDS 653
GI+FVRE+ SS A +HG N+ + +T + N + S+A +VDI+I+DVDS
Sbjct: 590 GIQFVREIDSSGAAQ----IHGKSNDPSYTDT-ALNASSAVSHADVEVTKVDIIIVDVDS 644
Query: 654 PDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLF 713
D SSG+TCPA DF++ SFL TVKD LSE GLF+VNLVSRSQA KDM +S+MK VF+HLF
Sbjct: 645 SDPSSGLTCPAPDFLDESFLETVKDRLSEDGLFVVNLVSRSQAIKDMALSKMKKVFSHLF 704
Query: 714 CLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIR 769
CLQL+EDVN V F L SESCI+D+ F EA+++L KL++F+H EI Q+I++A KKIR
Sbjct: 705 CLQLDEDVNEVHFALKSESCIEDSCFSEASLKLDKLLEFKHPEIGQNIINATKKIR 760
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205206|emb|CBI17265.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/806 (65%), Positives = 608/806 (75%), Gaps = 92/806 (11%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
M KKK+++ +LLQTLGDFTSKENWDKFFTIRG DSFEWYAEWPQL+DPL+S
Sbjct: 1 MSKKKQSEE-------ELLQTLGDFTSKENWDKFFTIRGSDDSFEWYAEWPQLKDPLLSH 53
Query: 61 IG--APTSSPPP----------QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108
+ AP S P QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML
Sbjct: 54 LSSTAPPSDPASEPPQPPPPPLQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 113
Query: 109 RRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRL 168
RRNVR R DMRWRVMD+TSMQ F D +FD ILDKGGLDALMEPELG KLG YL+EVKR+
Sbjct: 114 RRNVRSRPDMRWRVMDITSMQ-FPDGSFDAILDKGGLDALMEPELGPKLGKMYLTEVKRV 172
Query: 169 LKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSV 228
LKSGGKF+ LTLAESHVLGLLF KFRFGWKMS+H + QK S++PSL TFMVVA+KE+S+V
Sbjct: 173 LKSGGKFIGLTLAESHVLGLLFSKFRFGWKMSIHVVSQKPSNKPSLLTFMVVAEKESSTV 232
Query: 229 VLQVTSSFDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKN 288
+ Q+T+SF SSLD N NQA G++EA+E+EN+ RREYS+GSD++YSLEDLQLGAKGD+
Sbjct: 233 LHQITTSFARSSLDLNGNQARGLYEAIENENRIRREYSNGSDLIYSLEDLQLGAKGDLF- 291
Query: 289 LSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQ 348
+TRAHEWLFSSEEGQ
Sbjct: 292 ---------------------------------------------QTRAHEWLFSSEEGQ 306
Query: 349 WLVVESSKAARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGI 408
W+VVESSKAARLIMVLLDTSH +ASMD+IQKDLSPLVK+LAP ++ GAQIPFM+AGDGI
Sbjct: 307 WMVVESSKAARLIMVLLDTSHTNASMDDIQKDLSPLVKRLAPANNNTGAQIPFMIAGDGI 366
Query: 409 KHRNVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALL 468
K R +VHQ TS+LTG I VED+VYENVD + S + PS+ L FRRL FQR +GLVQSEALL
Sbjct: 367 KQRKIVHQVTSTLTGLITVEDVVYENVDGKVSHLVPSKALLFRRLTFQRAEGLVQSEALL 426
Query: 469 MRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDD-----SGNQLKVYHGYLASSYHMGI 523
R+G + + ETERKK+ SSSKS++KG Q++ D S N LKVYH YLASSYHMGI
Sbjct: 427 TREGGTQKIVSETERKKSISSSKSRKKGNQKKIDSLAIHGSSNNLKVYHNYLASSYHMGI 486
Query: 524 ISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAE 583
ISGF LISSYLESVAS G++VKAVVIGLGAGLLPMFLH CMPF+ IE VELD +LNLA
Sbjct: 487 ISGFMLISSYLESVASTGRTVKAVVIGLGAGLLPMFLHGCMPFLDIEVVELDPVILNLAR 546
Query: 584 DYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTR--SCNGNCTASN 641
+YFGF +DK LKVHI DGI+FVR + A D +S H N + S NG+CTAS+
Sbjct: 547 NYFGFCEDKHLKVHIADGIQFVRGV----AADGVSGKHVNNDAQCDAECPSSNGSCTASH 602
Query: 642 A------RVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695
A + DILIIDVDS DSSSGMTCPAADFV+ SFLLTVKD+LS+QGLF+VNLVSRS+
Sbjct: 603 AERKVISKFDILIIDVDSSDSSSGMTCPAADFVDESFLLTVKDSLSDQGLFVVNLVSRSR 662
Query: 696 ATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSESCIKDNSFPEAAVQLGKLV----- 750
A K+MV+SRMK VF+HLFCLQLEEDVN VLF L +E CIK+ F EAAV+L KL+
Sbjct: 663 AIKNMVVSRMKAVFSHLFCLQLEEDVNEVLFALRTEDCIKEEQFGEAAVELEKLLSWDRN 722
Query: 751 ----KFQHLEISQSIMDAAKKIRCLK 772
K + E+SQ I D+ +KI+CLK
Sbjct: 723 DLPEKSKPPEMSQIIRDSTEKIKCLK 748
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826625|ref|XP_002881195.1| hypothetical protein ARALYDRAFT_902209 [Arabidopsis lyrata subsp. lyrata] gi|297327034|gb|EFH57454.1| hypothetical protein ARALYDRAFT_902209 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/782 (63%), Positives = 605/782 (77%), Gaps = 30/782 (3%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKKK N++++SS D LQTL DFTSKENWDKFFT+RG DSFEWYAEWPQLRD L+ L
Sbjct: 1 MGKKKGNKAAASSD--DFLQTLEDFTSKENWDKFFTLRGNDDSFEWYAEWPQLRDSLLPL 58
Query: 61 IGAPTSSPPP---QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD 117
+ +SS QILVPGCGNSRLSEHLYDAGF ITNVDFSKVVISDMLRRN+R R +
Sbjct: 59 LQDSSSSSSSGSLQILVPGCGNSRLSEHLYDAGFRDITNVDFSKVVISDMLRRNIRTRPE 118
Query: 118 MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177
+RWRVMD+T MQ+ DE+FD +LDKG LDALMEPE+G KLGNQYLSE KR+LK GGKF+C
Sbjct: 119 LRWRVMDITKMQL-ADESFDTVLDKGALDALMEPEVGTKLGNQYLSEAKRVLKPGGKFIC 177
Query: 178 LTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFD 237
LTLAESHVL LLF +FRFGWKM+VH+I QK S+ L+TFMVVA+KENS ++ ++TS+FD
Sbjct: 178 LTLAESHVLALLFSRFRFGWKMNVHSIAQKRSN---LKTFMVVAEKENSVLLHEITSAFD 234
Query: 238 HSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFEL 297
SL N +Q G+ EALESENQ RR+ ++GSD+LYS EDL+LG KGD+ L+ G R +
Sbjct: 235 LLSLGRNDSQGSGMCEALESENQIRRDCNNGSDLLYSHEDLKLGIKGDLAALTGGRRIKF 294
Query: 298 ILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKA 357
LGG+G FSYRAVLLDA+ + PF+Y+CGVF+VPKTRAHEWLF SEEGQW VVESS+A
Sbjct: 295 TLGGQGS-NFSYRAVLLDAQRQTEPFVYHCGVFLVPKTRAHEWLFCSEEGQWQVVESSQA 353
Query: 358 ARLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQA 417
ARLIMV LD+SH+ A+M++IQ DLSP+V QLAP DD+ A+IP+MMA DGIK R+ VH+
Sbjct: 354 ARLIMVFLDSSHSGATMEDIQNDLSPMVTQLAPRNDDEEARIPYMMASDGIKKRDTVHEV 413
Query: 418 TSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRT 477
TSSLTG ++VED+VYE+ + PS DL FRRLVF+RT+GL+QSEALL+ DG
Sbjct: 414 TSSLTGEVVVEDVVYESAPSNLEDLSPSSDLAFRRLVFKRTEGLIQSEALLVEDGEILE- 472
Query: 478 DVETERKKASSSSKSKRKGTQRRSDDSGNQL-KVYHGYLASSYHMGIISGFTLISSYLES 536
+++++K S+SKRKG ++++ + L +V H YLASSYH GIISGFTL+SSYL+
Sbjct: 473 --QSQKEKTKDVSQSKRKGNKKQNQEPSKPLMRVSHDYLASSYHTGIISGFTLVSSYLKK 530
Query: 537 VASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV 596
S G VK VVIGLGAGLLPMFLH C+PF IEAVELD MLN+ +DYFGFT + LKV
Sbjct: 531 AESCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVELDPVMLNVGKDYFGFTHNDRLKV 590
Query: 597 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR----VDILIIDVD 652
HI DGIKF+R++ +S A+ +E TSN NG+ TA N + DILIIDVD
Sbjct: 591 HIADGIKFIRDITNSEAS--------SEETSNG--GSNGDSTAHNTQGGTCPDILIIDVD 640
Query: 653 SPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHL 712
S DSS G+TCPA+DF+E +FLL+VK AL + GLF+VNLVSRSQ+ KDMV++RMK VF+HL
Sbjct: 641 SADSSGGLTCPASDFIEETFLLSVKRALPQHGLFVVNLVSRSQSVKDMVVARMKKVFDHL 700
Query: 713 FCLQLEE--DVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRC 770
F LQLEE DVN+VLFGL SES I +N PE+AV L L+K Q LE QSI+DA KK++C
Sbjct: 701 FGLQLEEEDDVNVVLFGLCSESVISENDIPESAVILEGLLKCQRLETKQSIIDATKKLKC 760
Query: 771 LK 772
K
Sbjct: 761 WK 762
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 772 | ||||||
| TAIR|locus:2045253 | 760 | AT2G31740 [Arabidopsis thalian | 0.975 | 0.990 | 0.605 | 4e-241 | |
| MGI|MGI:1918699 | 698 | Mettl13 "methyltransferase lik | 0.541 | 0.598 | 0.350 | 3.3e-89 | |
| UNIPROTKB|A5PK19 | 699 | METTL13 "Methyltransferase-lik | 0.541 | 0.597 | 0.350 | 6.8e-89 | |
| RGD|1311526 | 700 | Mettl13 "methyltransferase lik | 0.542 | 0.598 | 0.348 | 1.8e-88 | |
| UNIPROTKB|F1PDJ6 | 699 | METTL13 "Uncharacterized prote | 0.541 | 0.597 | 0.348 | 6.8e-69 | |
| UNIPROTKB|B4E2X3 | 698 | METTL13 "cDNA FLJ56024" [Homo | 0.541 | 0.598 | 0.344 | 2.3e-68 | |
| UNIPROTKB|Q8N6R0 | 699 | METTL13 "Methyltransferase-lik | 0.541 | 0.597 | 0.344 | 2.3e-68 | |
| UNIPROTKB|F1S7S8 | 699 | METTL13 "Uncharacterized prote | 0.541 | 0.597 | 0.348 | 3.7e-68 | |
| FB|FBgn0032873 | 673 | CG2614 [Drosophila melanogaste | 0.259 | 0.297 | 0.373 | 2.2e-61 | |
| UNIPROTKB|Q29LW1 | 673 | GA15401 "Methyltransferase-lik | 0.502 | 0.576 | 0.299 | 2.4e-60 |
| TAIR|locus:2045253 AT2G31740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2324 (823.1 bits), Expect = 4.0e-241, P = 4.0e-241
Identities = 472/779 (60%), Positives = 585/779 (75%)
Query: 1 MGKKKKNQXXXXXXATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISL 60
MGKKK N+ D LQTL DFTSKENWDKFFT+RG DSFEWYAEWPQL D L+ L
Sbjct: 1 MGKKKGNKAAASTD--DFLQTLEDFTSKENWDKFFTLRGNDDSFEWYAEWPQLHDSLLPL 58
Query: 61 I--GAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM 118
+ + +SS QILVPGCGNSRL+EHLYDAGF ITNVDFSKVVISDMLRRN+R R ++
Sbjct: 59 LQDSSSSSSDSLQILVPGCGNSRLTEHLYDAGFRDITNVDFSKVVISDMLRRNIRTRPEL 118
Query: 119 RWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178
RWRVMD+T MQ+ DE+FD +LDKG LDALMEPE+G KLGNQYLSE KR+LK GGKF+CL
Sbjct: 119 RWRVMDITKMQL-ADESFDTVLDKGALDALMEPEVGTKLGNQYLSEAKRVLKPGGKFICL 177
Query: 179 TLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDH 238
TLAESHVL LLF +FRFGWKM+VH+I QK S L+T+MVVA+KENS ++ ++TS+F+
Sbjct: 178 TLAESHVLALLFSRFRFGWKMNVHSIAQKRSK---LKTYMVVAEKENSVLLHEITSAFEL 234
Query: 239 SSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELI 298
SL N +Q G+ EA+ESEN+ RR+ ++GSD+LYS EDL+LG KGD+ L+ G R +
Sbjct: 235 VSLGRNDSQGSGMREAVESENKIRRDCNNGSDLLYSHEDLKLGIKGDLAELTEGRRIKFT 294
Query: 299 LGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAA 358
LGG+G FSYRAVLLDA++ + PF+Y CGVF+VPKTRAHEWLF SEEGQW VVESS+AA
Sbjct: 295 LGGQGSN-FSYRAVLLDAQKQTEPFVYYCGVFLVPKTRAHEWLFCSEEGQWQVVESSQAA 353
Query: 359 RLIMVLLDTSHASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQAT 418
RLIMV LD+SH+ A+M++IQ DLSP+V QLAP DD+ A+IP+MMA DGIK R+ VH+ T
Sbjct: 354 RLIMVFLDSSHSGATMEDIQNDLSPMVTQLAPRNDDE-ARIPYMMASDGIKKRDTVHEVT 412
Query: 419 SSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTD 478
S +TG ++VED+VYE+ + S DL FRRLVF+RT+GL+QSEALL+ DG
Sbjct: 413 SPMTGKVVVEDVVYESAPSNLEDLSTSSDLAFRRLVFKRTEGLIQSEALLVEDGEILE-- 470
Query: 479 VETEXXXXXXXXXXXXXGTQRRSDDSGNQL-KVYHGYLASSYHMGIISGFTLISSYLEXX 537
+++ G ++++ + L +V H YLASSYH GIISGFTL+SSYL+
Sbjct: 471 -QSQKEKTKNVSQSKRKGNKKQNQEPSRPLMRVSHDYLASSYHTGIISGFTLVSSYLKKA 529
Query: 538 XXXXXXXXXXXIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 597
IGLGAGLLPMFLH C+PF IEAVELD ML++ +DYFGFTQ+ LKVH
Sbjct: 530 ESCGTMVKTVVIGLGAGLLPMFLHGCLPFFSIEAVELDPVMLSVGKDYFGFTQNDRLKVH 589
Query: 598 ITDGIKFVREMKSSSAT-DEMSVVHGN-EITSNNTRSCNGNCTASNARVDILIIDVDSPD 655
I DGIKF+R++ +S A+ +E S + N + T++NT+ G C DILIIDVDS D
Sbjct: 590 IADGIKFIRDITNSEASSEESSNIGSNGDSTTHNTQG--GICP------DILIIDVDSAD 641
Query: 656 SSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 715
SS G+TCPA+DF+E +FLL+VK AL + GLFIVNLV+RSQ+ KDMV+SRMK VF+HLF L
Sbjct: 642 SSGGLTCPASDFIEETFLLSVKQALPQHGLFIVNLVTRSQSVKDMVVSRMKKVFDHLFGL 701
Query: 716 QLEE--DVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQHLEISQSIMDAAKKIRCLK 772
QLEE DVN+VLFGL SES I +N PE+AV L L+K Q LE QSI+DA KK++C K
Sbjct: 702 QLEEEDDVNVVLFGLCSESVISENDIPESAVILEGLLKCQRLETKQSIIDATKKLKCWK 760
|
|
| MGI|MGI:1918699 Mettl13 "methyltransferase like 13" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 3.3e-89, Sum P(3) = 3.3e-89
Identities = 162/462 (35%), Positives = 236/462 (51%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQQRG-KTAFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT ++ F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLE-FPDATFQVVLDKG 122
Query: 144 GLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E E+ + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 123 TLDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVR 182
Query: 201 VHAIPQK----SSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 254
H + S +EP SL F V K V F+ C + Q +
Sbjct: 183 AHQVASSQDRVSEAEPRFSLPVFAFVMTKFRP-VPGSALQIFEL----CTQEQGKPVR-- 235
Query: 255 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLL 314
LES +Q Y+ QL K + ++S +L G G+ ++ V
Sbjct: 236 LESADQLAEAVRERQ--YYAWLCSQLRRKAGLGSVS----LDLCSGDTGEPRYTLHVVDN 289
Query: 315 DARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASM 374
A + S + +FI+P+ R EWLF EEG+ + S+ RL+ V L A M
Sbjct: 290 PAVKPSRDNHF--AIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLVTVALHRGQRYAGM 347
Query: 375 DEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 434
+ IQ +LS V +LAP Q+PF+ G I R V HQ S+L+G ++ED+ E+
Sbjct: 348 ESIQAELSARVMELAPAGLPPQQQVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQGED 407
Query: 435 VDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 476
R W FRRL+F + +VQSEA L++D +SHR
Sbjct: 408 ------R-W-----YFRRLIFLSNRNVVQSEARLLKD-TSHR 436
|
|
| UNIPROTKB|A5PK19 METTL13 "Methyltransferase-like protein 13" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 6.8e-89, Sum P(3) = 6.8e-89
Identities = 162/462 (35%), Positives = 232/462 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVVGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQME-FPDASFQVVLDKG 122
Query: 144 GLDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW +
Sbjct: 123 TLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVR 182
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 254
VH + Q +EP SL F + K V F+ + + K E
Sbjct: 183 VHQVASSQDQLLEAEPRFSLPVFAFIMTKFRP-VTGSALQIFELCAQEQGKPVRLESAEQ 241
Query: 255 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLL 314
L + R++Y+ L S QL K + ++S +L G G+ ++ V
Sbjct: 242 LAEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCNGDTGEPRYTLHVV-- 287
Query: 315 DARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASM 374
D+ + +FI+P+ R EWLF EEG+ + S+ RLI V L M
Sbjct: 288 DSPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGM 347
Query: 375 DEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 434
D IQ +LS V +LAP Q+PF+ G I R V HQA S L+G ++ED+ +
Sbjct: 348 DSIQAELSARVMELAPAGMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIEDV--QG 405
Query: 435 VDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 476
D + FRRL+F + +VQSEA L++D SHR
Sbjct: 406 DDKRY----------FRRLIFLSNRNVVQSEARLLQD-VSHR 436
|
|
| RGD|1311526 Mettl13 "methyltransferase like 13" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 161/462 (34%), Positives = 235/462 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L + L I P ++LV GCGNS LS
Sbjct: 10 EFGSADYWEKFFQHRG-KKTFEWYGTYLELCEVLHKYI-----KPKEKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ F D TF V+LDKG
Sbjct: 64 EQLYDVGYQDIMNIDISEVVIKQMKERNGSRRPHMSFLKMDMTHME-FPDATFQVVLDKG 122
Query: 144 GLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E E + ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 123 TLDAVLTDEEEKTLRQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVR 182
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 254
VH + Q S +EP SL F V K V F+ C + Q +
Sbjct: 183 VHQVTNSQDQVSEAEPRFSLPVFAFVMTKFRP-VPGSALQIFEL----CTQEQGKPVR-- 235
Query: 255 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLL 314
LES ++ + L+ A G + ++S +L G G+ ++ V
Sbjct: 236 LESADRLAEAVRERQHYAWLCSQLRRKAAG-LGSVS----LDLCSGDTGEPRYTLHVVDN 290
Query: 315 DARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASM 374
A + S + +FI+P+ R EWLF EEG+ + S+ RL+ V L SM
Sbjct: 291 PAVKPSRDNHF--AIFIIPQGRETEWLFGMEEGRKQLASSAGFRRLVTVALHRGQRYDSM 348
Query: 375 DEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 434
+ IQ +LS V +LAP Q+PF+ G I R V +A S+L+G ++ED+ E
Sbjct: 349 ESIQAELSARVMELAPAGMPPKQQVPFLSVGGDIGVRTVQQRAHSALSGDYVIEDVQGE- 407
Query: 435 VDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 476
D + FRRL+F + +VQSEA L++D SHR
Sbjct: 408 -DRRY----------FRRLIFLSNRSVVQSEARLLKD-VSHR 437
|
|
| UNIPROTKB|F1PDJ6 METTL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 6.8e-69, Sum P(2) = 6.8e-69
Identities = 161/462 (34%), Positives = 232/462 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
DF S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 DFGSVDYWEKFFQQRG-KKAFEWYGSYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M RN R M + MDMT M+ F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQME-FPDASFQVVLDKG 122
Query: 144 GLDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 123 TLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVR 182
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 254
VH + Q +EP SL F + K V F+ + + K E
Sbjct: 183 VHQVANSQDQVLEAEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAEQ 241
Query: 255 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLL 314
L + R++Y+ L S QL K + ++S +L G G+ ++ V
Sbjct: 242 LAEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCDGDTGEPRYTLHVV-- 287
Query: 315 DARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASM 374
D+ + +FI+P+ R EWLF EEG+ + ++ RLI V L M
Sbjct: 288 DSPTVKPSRDNHFAIFIIPQGRETEWLFGMEEGRKQLAATAGFRRLITVALHRGQQYEGM 347
Query: 375 DEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 434
D IQ +LS V +LAP Q+PF+ G I R V HQ S L+G +VED+ +
Sbjct: 348 DSIQAELSARVMELAPAGMPSQQQVPFLSVGGDIGVRTVQHQNCSPLSGSYVVEDV--QG 405
Query: 435 VDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 476
D + FRRL+F + +VQSEA L++D +SHR
Sbjct: 406 DDKHY----------FRRLIFLSNRNVVQSEARLLKD-ASHR 436
|
|
| UNIPROTKB|B4E2X3 METTL13 "cDNA FLJ56024" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 159/462 (34%), Positives = 231/462 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 9 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 62
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+ F D +F V+LDKG
Sbjct: 63 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQME-FPDASFQVVLDKG 121
Query: 144 GLDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 122 TLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVR 181
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 254
VH + Q +EP SL F + K V F+ + + K E
Sbjct: 182 VHQVANSQDQVLEAEPQFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQRKPVRLESAER 240
Query: 255 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLL 314
L Q R++Y+ L S QL K + ++S +L G G+ ++ V
Sbjct: 241 LAEAVQERQQYAW----LCS----QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV-- 286
Query: 315 DARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASM 374
D+ + +FI+P+ R EWLF +EG+ + S+ RLI V L SM
Sbjct: 287 DSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESM 346
Query: 375 DEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 434
D IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+ +
Sbjct: 347 DHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV--QG 404
Query: 435 VDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 476
D + FRRL+F + +VQSEA L++D SH+
Sbjct: 405 DDKRY----------FRRLIFLSNRNVVQSEARLLKD-VSHK 435
|
|
| UNIPROTKB|Q8N6R0 METTL13 "Methyltransferase-like protein 13" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 159/462 (34%), Positives = 231/462 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M N R M + MDMT M+ F D +F V+LDKG
Sbjct: 64 EQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQME-FPDASFQVVLDKG 122
Query: 144 GLDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++H+L F R GW +
Sbjct: 123 TLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVR 182
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 254
VH + Q +EP SL F + K V F+ + + K E
Sbjct: 183 VHQVANSQDQVLEAEPQFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQRKPVRLESAER 241
Query: 255 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLL 314
L Q R++Y+ L S QL K + ++S +L G G+ ++ V
Sbjct: 242 LAEAVQERQQYAW----LCS----QLRRKARLGSVS----LDLCDGDTGEPRYTLHVV-- 287
Query: 315 DARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASM 374
D+ + +FI+P+ R EWLF +EG+ + S+ RLI V L SM
Sbjct: 288 DSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESM 347
Query: 375 DEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 434
D IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+ +
Sbjct: 348 DHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV--QG 405
Query: 435 VDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 476
D + FRRL+F + +VQSEA L++D SH+
Sbjct: 406 DDKRY----------FRRLIFLSNRNVVQSEARLLKD-VSHK 436
|
|
| UNIPROTKB|F1S7S8 METTL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 161/462 (34%), Positives = 231/462 (50%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+F S + W+KFF RG +FEWY + +L L I P ++LV GCGNS LS
Sbjct: 10 EFGSVDYWEKFFQQRG-KKAFEWYGTYLELCGVLHKYI-----KPREKVLVIGCGNSELS 63
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
E LYD G+ I N+D S+VVI M RN R + + MDMT M+ F D +F V+LDKG
Sbjct: 64 EQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQME-FPDASFQVVLDKG 122
Query: 144 GLDALMEPELGHKLG--NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200
LDA++ E L ++ L+EV R+L+ GG+++C++LA++HVL F R GW +
Sbjct: 123 TLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHVLKKAVGHFSREGWMVR 182
Query: 201 VHAIP----QKSSSEP--SLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 254
VH + Q SEP SL F + K V F+ + + K E
Sbjct: 183 VHQVANSQDQLLDSEPRFSLPVFAFIMTKFRP-VPGSALQIFELCAQEQGKPVRLESAER 241
Query: 255 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLL 314
L + R++Y+ L S QL K + ++S +L G G+ ++ V
Sbjct: 242 LAEAVRERQQYAW----LCS----QLYRKAGLGSVS----LDLCNGDTGEPRYTLHVV-- 287
Query: 315 DARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASM 374
D+ + +FI+P+ R EWLF EEG+ + S+ RLI V L M
Sbjct: 288 DSPTVKASRDSHFAIFIIPQGRETEWLFGMEEGRKQLAASAGFRRLITVALHRGQQYEGM 347
Query: 375 DEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYEN 434
D IQ +LS V +LAP Q+PF+ G I R V HQ S L+G ++ED+ +
Sbjct: 348 DSIQAELSARVMELAPAGMPAQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDV--QG 405
Query: 435 VDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHR 476
D + FRRL+F + +VQSEA L++D SHR
Sbjct: 406 DDRRY----------FRRLIFLSNRNVVQSEARLLKD-VSHR 436
|
|
| FB|FBgn0032873 CG2614 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 83/222 (37%), Positives = 125/222 (56%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ +L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLELCDQIHKYI-----KPADRILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFD 137
GNS+LS +YD GF ITN+D S + + ML N + R +M++ MD T+M F DE+F
Sbjct: 58 GNSKLSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAM-TFPDESFS 116
Query: 138 VILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF---P 191
V LDKG LDAL EPE + N Y E+ R +++GG++V ++L + H+L L P
Sbjct: 117 VSLDKGTLDALFADDEPETRAVVEN-YFKEILRTMRNGGRYVGISLLQEHILNFLLDFLP 175
Query: 192 KFRFGWKMSVHAI------PQKSSSEP-SLQTFMVVADKENS 226
K ++ VH + +K++ + +L F+VVA K S
Sbjct: 176 KHNCMLRI-VHCLGVEQANKEKNADDALTLPVFVVVATKFKS 216
|
|
| UNIPROTKB|Q29LW1 GA15401 "Methyltransferase-like protein 13" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 2.4e-60, Sum P(3) = 2.4e-60
Identities = 126/421 (29%), Positives = 203/421 (48%)
Query: 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGC 77
L +T +F + W++FF RG +FEWY E+ L D + I P +IL+ GC
Sbjct: 4 LPKTREEFAQTDYWNEFFKKRG-EKAFEWYGEYLDLCDHIHKYI-----KPVDKILMLGC 57
Query: 78 GNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFD 137
GNS+LS +YD+ + ITN+D S V + ML +N R R DM++ MD T+M F DE+F
Sbjct: 58 GNSKLSMDMYDSEYRDITNIDISPVAVKKMLEQNARTRPDMKFLQMDATAM-TFPDESFS 116
Query: 138 VILDKGGLDALM---EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL---FP 191
V LDKG LDAL PE + N Y E+ R +++GG++ C++L + H+L L P
Sbjct: 117 VALDKGTLDALFVDDAPETKAVVEN-YFKEILRTMRNGGRYFCVSLLQEHILNFLVEFLP 175
Query: 192 KFRFGWKMSVHAIP-QKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFG 250
+ ++ VH + ++++ E + D V + + + F + + FG
Sbjct: 176 RHNCMLRI-VHCLGVEQANKEKNAD------DAMKMPVFVVIATKFKSLPMPILE---FG 225
Query: 251 IHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGC-RFELILGGEGDFCFSY 309
+ + Q E S S+ + S++ L G ++ G L L + Y
Sbjct: 226 LGN---DKMQRFTESSELSNAVRSVQKAALVFNGLARSSIAGHDEVTLDLYRPSENTPRY 282
Query: 310 RAVLLDARENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSH 369
+LD G Y FIVP+ R EWLF + G+ + S+K RL +V L
Sbjct: 283 SIYILDQAAARGLNKY--AAFIVPQGREIEWLFGTPSGRKKLQASAKFQRLAVVTLHRDQ 340
Query: 370 ASASMDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVED 429
+++E+Q +L V LAP + QIP++ G + R + S ++G +E+
Sbjct: 341 VYNTLEEVQAELGDTVFSLAPHGHIK--QIPYLSLGSDVGKRETLISGFSKISGEFRIEE 398
Query: 430 L 430
+
Sbjct: 399 V 399
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A5PK19 | MET13_BOVIN | 2, ., 1, ., 1, ., - | 0.3282 | 0.8173 | 0.9027 | yes | no |
| Q91YR5 | MET13_MOUSE | 2, ., 1, ., 1, ., - | 0.3222 | 0.8044 | 0.8896 | yes | no |
| A5WVX1 | MET13_DANRE | 2, ., 1, ., 1, ., - | 0.3035 | 0.8445 | 0.9449 | yes | no |
| Q8N6R0 | MET13_HUMAN | 2, ., 1, ., 1, ., - | 0.3286 | 0.8121 | 0.8969 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 772 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-12 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-10 | |
| COG0421 | 282 | COG0421, SpeE, Spermidine synthase [Amino acid tra | 2e-09 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-07 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 9e-06 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-05 | |
| PRK04457 | 262 | PRK04457, PRK04457, spermidine synthase; Provision | 3e-05 | |
| PRK00811 | 283 | PRK00811, PRK00811, spermidine synthase; Provision | 5e-04 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.002 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDET 135
GCG L+E L G +T VD S +ML R R+ ++ V D + F DE+
Sbjct: 4 GCGTGLLAEALARRGGARVTGVDLSP----EMLAL-ARKRAPRKFVVGDAEDLP-FPDES 57
Query: 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177
FDV++ L L +PE + L E+ R+LK GGK V
Sbjct: 58 FDVVVSSLVLHHLPDPE-------RALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-10
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQV 130
+L GCG L+ L +T VD S V + + +D + D +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177
DE+FDVI+ D + + ++L E +RLLK GG V
Sbjct: 62 EADESFDVII----SDPPLHHLVEDLA--RFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 50/176 (28%)
Query: 545 KAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFT----QDKSLKVH 597
+ ++IG G G L E + P I VE+D ++ LA Y D +++
Sbjct: 79 RVLIIGGGDGGT---LREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII 135
Query: 598 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS 657
I DG++F+R+ + D++I+D P
Sbjct: 136 IDDGVEFLRD--------------------------------CEEKFDVIIVDSTDPVG- 162
Query: 658 SGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLF 713
PA F + AL E G+F+ + S +D I+ + +F
Sbjct: 163 -----PAEALFTEEFYEGCRRALKEDGIFVAQ--AGSPFLQDEEIALAYRNVSRVF 211
|
Length = 282 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR--SDMRWR 121
++L GCG L+ L + G + +D S+ I + N + ++ +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-KENAKKLGYENVEFI 59
Query: 122 VMDMTSMQ--VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179
D+ + D +FDV++ L+ L +P+ + L E+ R+LK GG +
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPD-------KVLEEIIRVLKPGGVLIVSD 112
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNV 112
R LISL+G P ++L CG ++ L + G + +D S ML
Sbjct: 40 RRALISLLGIK---PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS----ESMLEVA- 91
Query: 113 RDR------SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK 166
R++ ++ + V D ++ F D +FD + GL + + + + L E+
Sbjct: 92 REKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGLRNVTDID-------KALKEMY 143
Query: 167 RLLKSGGKFVCL 178
R+LK GG+ + L
Sbjct: 144 RVLKPGGRLLVL 155
|
Length = 238 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-06
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131
IL GCG R+ L AG +T VD SK + R +R+ V D + F
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLP-F 59
Query: 132 MDETFD-VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 173
+ +FD VI LD L +L L E RLL+ GG
Sbjct: 60 EEGSFDLVICAGLSLDYLSPKQLR-----ALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
P ++L GCG L+ L +T VD S ++ ++ R N + R +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEML-ELARENAKLALGPRITFVQGD 59
Query: 127 SMQVFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
+ E FD + GG L+E L + LLK GG+ V
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE----------LLDALASLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 69 PPQILVPGCGNSRLSEHLYDAG----FHGITNVDFSKVVISDMLRRNV---RDRSDMRWR 121
++L PG G+ AG G V+ + RR + +R
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVG---VELDPEAA-ALARRRLALAGLAPRVRVV 56
Query: 122 VMDMTSMQVFMDETFDVILDKGG----LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177
V D + D +FD++L G +P+ L +++L+ RLLK GG V
Sbjct: 57 VGDARELLELPDGSFDLVL---GNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
Query: 178 LT 179
+T
Sbjct: 114 IT 115
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|179854 PRK04457, PRK04457, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 542 KSVKAVV-IGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHI 598
+ ++ IGLG G L F++ +P AVE++ ++ +A ++F + +V
Sbjct: 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF-ELPENGERFEVIE 123
Query: 599 TDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIID-VDS---P 654
DG +++ + S+ D++++D D
Sbjct: 124 ADGAEYIAVHRHST--------------------------------DVILVDGFDGEGII 151
Query: 655 DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFN-HLF 713
D F ++ALS G+F+VNL SR + D + R++ F +
Sbjct: 152 D----------ALCTQPFFDDCRNALSSDGIFVVNLWSRDKRY-DRYLERLESSFEGRVL 200
Query: 714 CLQLEEDVNLVLFGLSS 730
L E N+ +F S
Sbjct: 201 ELPAESHGNVAVFAFKS 217
|
Length = 262 |
| >gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 31/121 (25%), Positives = 42/121 (34%), Gaps = 43/121 (35%)
Query: 572 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 626
VE+D ++ + Y G D +++ I DGIKFV E T+
Sbjct: 106 VEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE------TEN---------- 149
Query: 627 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 686
D +II VDS D PA F K AL E G+F
Sbjct: 150 ----------------SFD-VII-VDSTDPVG----PAEGLFTKEFYENCKRALKEDGIF 187
Query: 687 I 687
+
Sbjct: 188 V 188
|
Length = 283 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 76 GCGNSRLSEHLYDAGFHG-ITNVDFSKVVISDMLRRNVRDRSD----MRWRVMDMTSMQV 130
GCG L L +A T VD S + R +R V+D +
Sbjct: 4 GCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLD- 62
Query: 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 175
+FDV++ L L +P L ++RLLK GG
Sbjct: 63 --PGSFDVVVASNVLHHLADPR-------AVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 772 | |||
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 100.0 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.97 | |
| PLN02823 | 336 | spermine synthase | 99.91 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 99.9 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 99.89 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.87 | |
| PLN02366 | 308 | spermidine synthase | 99.86 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.82 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.76 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.76 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.75 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 99.72 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.69 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.68 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.66 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.65 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.64 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.64 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.63 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.62 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.58 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.58 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.58 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.58 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.57 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.56 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.54 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.53 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.51 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.51 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.49 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.49 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.48 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 99.48 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.46 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.46 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.44 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.44 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.44 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.42 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.42 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.41 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.4 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.4 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.39 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.39 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.39 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.38 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 99.37 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.37 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.37 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.37 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.36 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.36 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.35 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.35 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.33 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.32 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.32 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.32 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.31 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.3 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.29 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.29 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.29 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.28 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.26 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.26 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.25 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.24 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.24 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.23 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.23 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.23 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.22 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.21 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.21 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.21 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.19 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.19 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.19 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.19 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.18 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.16 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.16 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.16 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.15 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.14 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.14 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.14 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.13 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.13 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.11 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.11 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.1 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.1 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.09 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.09 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.08 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.08 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.08 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.07 | |
| PLN02476 | 278 | O-methyltransferase | 99.06 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.05 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.05 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.05 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.05 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.04 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.04 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.03 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.03 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.02 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.01 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.01 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.01 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.01 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.01 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.0 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.0 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.99 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.99 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.99 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.98 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.97 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.96 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.95 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.94 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.94 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.92 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.91 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.9 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.88 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.87 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.86 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.85 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.85 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.84 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.84 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.83 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.83 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.82 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.82 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.81 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.79 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.79 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.77 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.77 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.77 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.75 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.74 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.73 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.72 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.72 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.71 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.71 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.7 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.7 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.67 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.67 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.66 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.66 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.66 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.65 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.64 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.63 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.62 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.62 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.61 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.61 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.6 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.6 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.6 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.59 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.58 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.58 | |
| PLN02366 | 308 | spermidine synthase | 98.57 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.57 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.57 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.56 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.56 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.56 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.55 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.55 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.55 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.54 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.54 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.53 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.53 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.53 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.53 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.53 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.52 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.52 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.52 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.51 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.51 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.49 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.49 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.49 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.48 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.48 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.47 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.47 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.47 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.47 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.46 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.46 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.46 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.46 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.45 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.44 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.44 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.44 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.44 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.43 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.43 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.42 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.41 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.41 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.41 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.4 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.39 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.39 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.38 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.38 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.38 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.37 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.37 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.37 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.36 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.35 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.35 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.35 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.34 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.32 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.31 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.31 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.31 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.31 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.3 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.29 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.28 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.28 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.28 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.27 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.27 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.27 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.27 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.26 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.26 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.25 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.25 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.25 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.24 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.24 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.23 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.23 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.22 | |
| PLN02476 | 278 | O-methyltransferase | 98.22 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.22 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.22 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.21 | |
| PLN02823 | 336 | spermine synthase | 98.21 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.21 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.2 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.2 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.19 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.18 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.18 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.18 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.17 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.17 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.17 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.16 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.16 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.16 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.16 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.16 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.14 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.13 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.13 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.12 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.11 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.11 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.11 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.1 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.09 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.08 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.07 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.06 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.06 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.06 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.05 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.05 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.04 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.04 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.02 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.02 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.02 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.01 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.01 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.01 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.98 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.97 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.97 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.97 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.96 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.96 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 97.95 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.94 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 97.94 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.93 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.93 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.93 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.92 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.91 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.89 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.88 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.88 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.88 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 97.87 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.86 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.85 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.85 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.85 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.85 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.84 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.82 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.81 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.81 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.8 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.79 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.79 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.77 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.77 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.77 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.77 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.77 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.76 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.75 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.75 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.75 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.75 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.75 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.74 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.73 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.7 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.68 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.68 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.64 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.64 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.64 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.64 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.62 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.62 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.62 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.61 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.61 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.61 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.59 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.56 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.55 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.54 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.52 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.52 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.52 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.51 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.47 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.46 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.45 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.44 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.44 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.44 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.42 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.41 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.41 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.41 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.4 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.39 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.37 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.36 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.35 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.32 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.32 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.3 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.28 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.27 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.27 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.26 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 97.24 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.24 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.21 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.18 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.14 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.14 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.13 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.11 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.11 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.1 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.09 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.09 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.06 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.06 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.06 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.06 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.05 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.96 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.96 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.93 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.91 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.88 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.88 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 96.87 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.87 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.85 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 96.85 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.82 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.81 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.78 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.76 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.7 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.7 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.63 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.62 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.56 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.5 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.5 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 96.47 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.43 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.41 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.41 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.39 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 96.38 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.34 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.27 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.21 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 96.13 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.12 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.08 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.02 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.88 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.86 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 95.85 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.85 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.83 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.73 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.61 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.46 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 95.4 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 95.23 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.21 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.18 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.18 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.17 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.1 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.03 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.0 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.99 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 94.97 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 94.91 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.8 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 94.74 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.67 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.66 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.65 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 94.52 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.47 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.28 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.26 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 94.21 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 94.21 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.02 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.96 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 93.91 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 93.87 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 93.83 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 93.72 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.61 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.56 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 93.48 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 93.44 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.37 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.27 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 93.27 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 93.22 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 93.22 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.16 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.07 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.93 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 92.72 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 92.72 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 92.67 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 92.54 |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=572.16 Aligned_cols=451 Identities=41% Similarity=0.648 Sum_probs=413.2
Q ss_pred hcccccCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCC-eEEEEcCCCchhHHHHHHcCCCeEEE
Q 004133 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPP-QILVPGCGNSRLSEHLYDAGFHGITN 96 (772)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~-~ILDlGCG~G~ls~~La~~g~~~V~g 96 (772)
+|+....|.+..||+.||..++ ...++||+.+..++..|..++. +.. ++|.+|||++.+++.+++.||.+|++
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~ 76 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITN 76 (482)
T ss_pred CcccccccCcchhhhhhccccC-CChHHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCcee
Confidence 7889999999999999999986 6899999999999999999985 455 99999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchH---HHHHHHHHHHhccccCe
Q 004133 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHK---LGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 97 vDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~---~~~~~l~ei~rvLkpGG 173 (772)
+|+|+.+++.|..++....+.+.|..+|+..+. |++++||+|+++|++|++..++.... .+..++.+++|+|++||
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~g 155 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGG 155 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCC
Confidence 999999999999998877889999999999999 99999999999999999998876655 58899999999999999
Q ss_pred EEEEEEcCchhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCCccccccccccccCCCccCccchhhHHH
Q 004133 174 KFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 253 (772)
Q Consensus 174 ~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 253 (772)
+++.+++.+
T Consensus 156 k~~svtl~~----------------------------------------------------------------------- 164 (482)
T KOG2352|consen 156 KYISVTLVQ----------------------------------------------------------------------- 164 (482)
T ss_pred EEEEEEeee-----------------------------------------------------------------------
Confidence 999998775
Q ss_pred HHHHhhhhhhhhcCCCcccchhhhhhccccccccccCCCceEEEEeCCCCCceeeEEEEEEeCCCCCCCCcccEEEEEee
Q 004133 254 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVP 333 (772)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~y~~~v~D~~~~~~~~~~~~a~fiVP 333 (772)
+||
T Consensus 165 -----------------------------------------------------------------------------~vp 167 (482)
T KOG2352|consen 165 -----------------------------------------------------------------------------VVP 167 (482)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 899
Q ss_pred CCCccccccCChhhHHHHHHhcCCCEEEEEEecCCCCCCc--hHHHHHhhhHHHHhcCCCCCCCCCCccEEecCCCceee
Q 004133 334 KTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS--MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHR 411 (772)
Q Consensus 334 ~gre~ewlfst~eG~~~l~~sa~~~RLi~v~l~~~~~~~~--~~~vk~el~~~v~~l~p~~~~~~~~ip~l~~~~~i~~r 411 (772)
+||+++|+|+++.|++++..+++..||++|.+++++.|.. +++++..+++.+..+.|+++++..+.|+++.|+++
T Consensus 168 ~~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls~g~d~--- 244 (482)
T KOG2352|consen 168 QGRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILSIGEDV--- 244 (482)
T ss_pred CCCCeeeeecCccchhhhhhhccCcceEEEEeccCccccchHHhhhccccccceeecccccCChhhhhccccccccc---
Confidence 9999999999999999999999999999999999999998 89999999999999999999888899999877533
Q ss_pred eEEEEEecCCccCEEEEEeecccCCCCcccCCCCCCceeeeEEecCCCCceecceEeeccCCCCCcchhhhhhhcccccc
Q 004133 412 NVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSK 491 (772)
Q Consensus 412 ~~~~~~~s~~~g~~~Vedv~~e~~~~~~~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~ 491 (772)
..|||.+..|.|++|||++..
T Consensus 245 -------------------------------------~~~~l~~~~n~nv~q~~~k~~---------------------- 265 (482)
T KOG2352|consen 245 -------------------------------------GVRRLPPCGNMNVVQSEAKKD---------------------- 265 (482)
T ss_pred -------------------------------------ccccccCCCCcceecCchhcc----------------------
Confidence 356666666999999996110
Q ss_pred ccccCcccCCCCCCcceeecCCccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEE
Q 004133 492 SKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEA 571 (772)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~ 571 (772)
...||+|+||+.|++|++|+.+... ...+....+||+|+|||.||+||+.++|..++++
T Consensus 266 -------------------r~~~l~s~~h~~m~~g~aL~~n~~~--~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ 324 (482)
T KOG2352|consen 266 -------------------RKPELASQYHQMMIGGLALIMNRPP--QKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITA 324 (482)
T ss_pred -------------------cCcccCcchhhhhhccceeccccCc--hhccccCcEEEEecCCCccccceeeecCccceeE
Confidence 1128999999999999999987654 2346778999999999999999999999999999
Q ss_pred EEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeC
Q 004133 572 VELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV 651 (772)
Q Consensus 572 VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~ 651 (772)
||+||.|+++|+.||||.++.|.+||+.||++|++++.+. ..++.+||+|++|+
T Consensus 325 ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~--------------------------~~~~~~~dvl~~dv 378 (482)
T KOG2352|consen 325 VEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKS--------------------------QQEDICPDVLMVDV 378 (482)
T ss_pred EEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhc--------------------------cccccCCcEEEEEC
Confidence 9999999999999999998889999999999999998732 12368999999999
Q ss_pred CCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEecCC
Q 004133 652 DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 652 ~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
|++| +.||+|||+.|++..||..++..|.|.|+|++|+++|+..++.++...|+++|+++|.+++++++|.|++|+..+
T Consensus 379 ds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~N~il~~~~~~ 457 (482)
T KOG2352|consen 379 DSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDVNEILIGQMPP 457 (482)
T ss_pred CCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCCceeEEeecCh
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Cc
Q 004133 732 SC 733 (772)
Q Consensus 732 ~~ 733 (772)
..
T Consensus 458 ~~ 459 (482)
T KOG2352|consen 458 KQ 459 (482)
T ss_pred hc
Confidence 54
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=266.88 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=183.0
Q ss_pred eeeeEEecCCCCceecceEeeccCCCCCcchhhhhhhccccccccccCcccCCCCCCcceeecCCccchHHHHHHHHHHh
Q 004133 449 KFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT 528 (772)
Q Consensus 449 ~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~ 528 (772)
-+|.|.| +.+.+||.+.+. +|..|.++|+++|++++.
T Consensus 26 ~~R~L~f--~~~~~qs~~~~~-----------------------------------------~P~~l~~~y~~~m~~~l~ 62 (262)
T PRK04457 26 GVRSLHL--GSDTVQSSMRID-----------------------------------------DPSELELAYTRAMMGFLL 62 (262)
T ss_pred CEEEEEE--CCCcceeeeecC-----------------------------------------CcccccCHHHHHHHHHHh
Confidence 4999999 667999987764 466788999999997765
Q ss_pred hhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHh
Q 004133 529 LISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVRE 607 (772)
Q Consensus 529 l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~ 607 (772)
+. +.+.+||+||+|+|+++.+++..+|..+|++||+||+|+++|+++|++.. +++++++++||.+|+..
T Consensus 63 ~~----------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 63 FN----------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred cC----------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 42 45689999999999999999999999999999999999999999999864 58999999999999976
Q ss_pred hcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 608 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
.. .+||+|++|++++. .+|..+.+.+|++.++++|+|||+++
T Consensus 133 ~~--------------------------------~~yD~I~~D~~~~~------~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 133 HR--------------------------------HSTDVILVDGFDGE------GIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred CC--------------------------------CCCCEEEEeCCCCC------CCccccCcHHHHHHHHHhcCCCcEEE
Confidence 43 57999999987653 24778999999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhccc-eEEEeecCCceEEEEEecC-CCcCCCCcHHHHHHHHhhhcCCC
Q 004133 688 VNLVSRSQATKDMVISRMKMVFNH-LFCLQLEEDVNLVLFGLSS-ESCIKDNSFPEAAVQLGKLVKFQ 753 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF~~-v~~~~~~~~~N~vl~a~~~-~~~~~~~~l~~~a~~l~~~~~~~ 753 (772)
+|++.++... ..++++++++|++ ++.++..++.|.|+||++. +.......|.++|+.|++.++++
T Consensus 175 in~~~~~~~~-~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~~l~~~~~~~ 241 (262)
T PRK04457 175 VNLWSRDKRY-DRYLERLESSFEGRVLELPAESHGNVAVFAFKSAPKELRWDKLRKRAKKLENEHGLD 241 (262)
T ss_pred EEcCCCchhH-HHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 9999887654 6679999999985 7888888889999999885 44566677999999999877765
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=225.32 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC----CCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~----~~~ 592 (772)
+.||+.|+ ++++..+ +.+++||+||+|+|++++.+..+.+..+|++|||||.|+++|++||.+. .++
T Consensus 87 ~~YhE~l~-h~~l~~~--------~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dp 157 (336)
T PLN02823 87 FVYHESLV-HPALLHH--------PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDK 157 (336)
T ss_pred HHHHHHHH-hHHHhhC--------CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCC
Confidence 45998665 4444443 6788999999999999999988877779999999999999999999764 479
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++||++||++.. .+||+||+|+..+ .. .+|+..|++.+|
T Consensus 158 rv~v~~~Da~~~L~~~~--------------------------------~~yDvIi~D~~dp--~~--~~~~~~Lyt~eF 201 (336)
T PLN02823 158 RLELIINDARAELEKRD--------------------------------EKFDVIIGDLADP--VE--GGPCYQLYTKSF 201 (336)
T ss_pred ceEEEEChhHHHHhhCC--------------------------------CCccEEEecCCCc--cc--cCcchhhccHHH
Confidence 99999999999996642 6799999998543 22 135788999999
Q ss_pred HH-HHHHccCCCcEEEEEecCC----ChhHHHHHHHHHHHhccceEEEee--c--CCceEEEEEecCCCc-CCCCcHHHH
Q 004133 673 LL-TVKDALSEQGLFIVNLVSR----SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSESC-IKDNSFPEA 742 (772)
Q Consensus 673 l~-~~~~~L~~~Gilv~Nl~~~----~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~vl~a~~~~~~-~~~~~l~~~ 742 (772)
++ .++++|+|+|++++|..+. .......++++++++|++++.+.. + .+....++|++.+.. ++...+.++
T Consensus 202 ~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~ 281 (336)
T PLN02823 202 YERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSR 281 (336)
T ss_pred HHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHh
Confidence 99 9999999999999998653 255678899999999999877763 2 233567888876532 344445444
Q ss_pred H
Q 004133 743 A 743 (772)
Q Consensus 743 a 743 (772)
.
T Consensus 282 ~ 282 (336)
T PLN02823 282 I 282 (336)
T ss_pred h
Confidence 3
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=209.97 Aligned_cols=188 Identities=21% Similarity=0.375 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC----CC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~----~~ 592 (772)
+.|| .|++.+++.++ +++++|||||+|.|++++.+.++.+..++++|||||.|+++||+||+... |+
T Consensus 60 ~~yh-Eml~h~~~~ah--------~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dp 130 (282)
T COG0421 60 FIYH-EMLAHVPLLAH--------PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDP 130 (282)
T ss_pred HHHH-HHHHhchhhhC--------CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCC
Confidence 4555 57777777776 77789999999999999999999988899999999999999999997665 89
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++||.+||++.. .+||+||+|.+.+ . .|.+.|++.+|
T Consensus 131 Rv~i~i~Dg~~~v~~~~--------------------------------~~fDvIi~D~tdp--~----gp~~~Lft~eF 172 (282)
T COG0421 131 RVEIIIDDGVEFLRDCE--------------------------------EKFDVIIVDSTDP--V----GPAEALFTEEF 172 (282)
T ss_pred ceEEEeccHHHHHHhCC--------------------------------CcCCEEEEcCCCC--C----CcccccCCHHH
Confidence 99999999999999975 4799999987655 2 27899999999
Q ss_pred HHHHHHccCCCcEEEEEecCCC--hhHHHHHHHHHHHhccc--eEEEeecC--Cc-eEEEEEecCCC-cCC-CCcHHHHH
Q 004133 673 LLTVKDALSEQGLFIVNLVSRS--QATKDMVISRMKMVFNH--LFCLQLEE--DV-NLVLFGLSSES-CIK-DNSFPEAA 743 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~~--~~~~~~v~~~l~~vF~~--v~~~~~~~--~~-N~vl~a~~~~~-~~~-~~~l~~~a 743 (772)
++.++++|+++|+++.|.-+.. .+....+...++++|+. .|...++. .. -.+++++.... .+. .+....++
T Consensus 173 y~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~~~~~~~~~~ 252 (282)
T COG0421 173 YEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLKSLDALQARA 252 (282)
T ss_pred HHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeecCCCCcccchhHHHHHH
Confidence 9999999999999999932211 13345667888999984 33333332 22 34666663332 222 22344455
Q ss_pred HHHhhhcCC
Q 004133 744 VQLGKLVKF 752 (772)
Q Consensus 744 ~~l~~~~~~ 752 (772)
..+ ..+++
T Consensus 253 ~~~-~~~~y 260 (282)
T COG0421 253 LAL-LTLKY 260 (282)
T ss_pred hhh-hhhcc
Confidence 555 44443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=210.47 Aligned_cols=170 Identities=24% Similarity=0.385 Sum_probs=132.7
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~ 591 (772)
...||+.|+ ++++..+ +++++||+||+|+|++++.+.++.+..+|++|||||.|+++|++||+. ..|
T Consensus 59 e~~y~e~l~-h~~~~~~--------~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d 129 (246)
T PF01564_consen 59 EFIYHEMLV-HPPLLLH--------PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDD 129 (246)
T ss_dssp HHHHHHHHH-HHHHHHS--------SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGS
T ss_pred hHHHHHHHh-hhHhhcC--------CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCC
Confidence 367888766 4444443 688999999999999999999987777999999999999999999954 258
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+|++++++||+.||++.. ..+||+||+|+.+++ +|+..+++.+
T Consensus 130 ~r~~i~~~Dg~~~l~~~~-------------------------------~~~yDvIi~D~~dp~------~~~~~l~t~e 172 (246)
T PF01564_consen 130 PRVRIIIGDGRKFLKETQ-------------------------------EEKYDVIIVDLTDPD------GPAPNLFTRE 172 (246)
T ss_dssp TTEEEEESTHHHHHHTSS-------------------------------ST-EEEEEEESSSTT------SCGGGGSSHH
T ss_pred CceEEEEhhhHHHHHhcc-------------------------------CCcccEEEEeCCCCC------CCcccccCHH
Confidence 999999999999999975 128999999998753 2455599999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ecC-CceEEEEEecCC
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSE 731 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~vl~a~~~~ 731 (772)
|++.++++|+|+|++++|..+. .......+.++++++|+++..+. ++. ..+...|+..+.
T Consensus 173 f~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~ 237 (246)
T PF01564_consen 173 FYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASK 237 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEES
T ss_pred HHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeC
Confidence 9999999999999999998543 45667788999999999766554 444 334444554443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=202.99 Aligned_cols=168 Identities=24% Similarity=0.337 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-----CCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQ 590 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-----~~~ 590 (772)
.+.||+ |+++++++.+ +++.+||+||+|+|.++..+.++.+..+|++|||||.|+++|++||. ..+
T Consensus 59 e~~Y~e-~l~h~~~~~~--------~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~ 129 (283)
T PRK00811 59 EFIYHE-MMTHVPLFAH--------PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYD 129 (283)
T ss_pred hhhHHH-HhhhHHHhhC--------CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccccc
Confidence 367988 5556666654 67889999999999999988887666699999999999999999993 336
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
++|++++++||++|++.. ..+||+||+|+..+. +|+..+++.
T Consensus 130 d~rv~v~~~Da~~~l~~~--------------------------------~~~yDvIi~D~~dp~------~~~~~l~t~ 171 (283)
T PRK00811 130 DPRVELVIGDGIKFVAET--------------------------------ENSFDVIIVDSTDPV------GPAEGLFTK 171 (283)
T ss_pred CCceEEEECchHHHHhhC--------------------------------CCcccEEEECCCCCC------CchhhhhHH
Confidence 899999999999999773 267999999875442 367789999
Q ss_pred HHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--cC---CceEEEEEecC
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSS 730 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~vl~a~~~ 730 (772)
+|++.++++|+|||++++|..+. +......++++++++|+++..+.. +. +....++|++.
T Consensus 172 ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 172 EFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred HHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEeecC
Confidence 99999999999999999997543 455677889999999999877663 22 22345777774
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=199.96 Aligned_cols=169 Identities=21% Similarity=0.329 Sum_probs=134.0
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~ 591 (772)
.+.||. |++++++..+ +++.+||+||+|+|++++.+.++.+..+|++||||+.|+++|++||.. .++
T Consensus 74 e~~Y~e-~l~h~~l~~~--------~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~d 144 (308)
T PLN02366 74 ECAYQE-MITHLPLCSI--------PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDD 144 (308)
T ss_pred HHHHHH-HHHHHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCC
Confidence 456876 6666776654 678999999999999999999885556999999999999999999942 258
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+|++++++||++|+++.. +.+||+||+|++.+. .|+..|++.+
T Consensus 145 pRv~vi~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~------~~~~~L~t~e 187 (308)
T PLN02366 145 PRVNLHIGDGVEFLKNAP-------------------------------EGTYDAIIVDSSDPV------GPAQELFEKP 187 (308)
T ss_pred CceEEEEChHHHHHhhcc-------------------------------CCCCCEEEEcCCCCC------CchhhhhHHH
Confidence 999999999999998753 257999999886542 2678899999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhcc-ceEE--EeecC---CceEEEEEecC
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFN-HLFC--LQLEE---DVNLVLFGLSS 730 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~-~v~~--~~~~~---~~N~vl~a~~~ 730 (772)
|++.++++|+|||++++|.-+. .......++++++++|+ .+.. ..++. +....++|++.
T Consensus 188 f~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 188 FFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 9999999999999999876432 35566788999999994 4433 23332 33557788776
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-19 Score=191.22 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-------
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 589 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------- 589 (772)
+-||.+|+. .++..+ ++|.+||+||+|+|.+++.+.++.+..+|++|||||+|+++|+++|.+.
T Consensus 134 ~iYHE~Lvh-p~m~~h--------~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 134 QIYHEALVH-PIMSKV--------IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred HHHHHHHHH-HHHHhC--------CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 558887765 344443 6789999999999999888888866679999999999999999976543
Q ss_pred CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc
Q 004133 590 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 669 (772)
Q Consensus 590 ~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~ 669 (772)
.++|++++++||++|++... .+||+||+|+..+ .. .++..+++
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~--------------------------------~~YDVIIvDl~DP--~~---~~~~~LyT 247 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPS--------------------------------SLYDVIIIDFPDP--AT---ELLSTLYT 247 (374)
T ss_pred CCCceEEEECcHHHHHHhcC--------------------------------CCccEEEEcCCCc--cc---cchhhhhH
Confidence 58999999999999997743 5799999997543 21 24678999
Q ss_pred HHHHHHHHHccCCCcEEEEEecCCC--hhHHHHHHHHHHHhccceEEEee--c--CCceEEEEEecCCC
Q 004133 670 GSFLLTVKDALSEQGLFIVNLVSRS--QATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSES 732 (772)
Q Consensus 670 ~~fl~~~~~~L~~~Gilv~Nl~~~~--~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~vl~a~~~~~ 732 (772)
.+|++.++++|+|||+|+++..+.. ......+.++++++|..+..+.. + .+....++|++.+.
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCcc
Confidence 9999999999999999999864442 22335578999999997666543 2 23356777877653
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-18 Score=163.76 Aligned_cols=167 Identities=29% Similarity=0.480 Sum_probs=125.4
Q ss_pred CCCCHHHHHHHHHhcC-----CCCccc-cccchhhHHHHHHHhhcCCC-----CCCCCeEEEEcCCCchhHHHHHHcCCC
Q 004133 24 DFTSKENWDKFFTIRG-----IGDSFE-WYAEWPQLRDPLISLIGAPT-----SSPPPQILVPGCGNSRLSEHLYDAGFH 92 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~-----~~~~~e-W~~~~~~l~~~l~~~l~~~~-----~~~~~~ILDlGCG~G~ls~~La~~g~~ 92 (772)
..+.++||++.|..+. +++.-| ||+. .....+..|+.... .+...+|||+|||||.+...|++.||.
T Consensus 14 ~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~ 91 (227)
T KOG1271|consen 14 KLGTKSYWDAAYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQ 91 (227)
T ss_pred ccchHHHHHHHHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCC
Confidence 4578999999997653 222233 9986 33333444442210 133459999999999999999999986
Q ss_pred e-EEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccccccCccch-HHHHHHHHHHHhc
Q 004133 93 G-ITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGH-KLGNQYLSEVKRL 168 (772)
Q Consensus 93 ~-V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~-~~~~~~l~ei~rv 168 (772)
. ++|+|+|+.+++.|+..+....- .++|.+.|+++.. +..+.||+|+++|+++++.-..+.+ ..+..++..+.+.
T Consensus 92 ~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~l 170 (227)
T KOG1271|consen 92 SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKL 170 (227)
T ss_pred CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhc
Confidence 5 99999999999999877755443 3999999999987 8899999999999999987533222 3347899999999
Q ss_pred cccCeEEEEEEcCchhhhhcccccccC
Q 004133 169 LKSGGKFVCLTLAESHVLGLLFPKFRF 195 (772)
Q Consensus 169 LkpGG~~ii~~~~~~~~~~~l~~~~~~ 195 (772)
|+|||+|++.+.. +...+|...|..
T Consensus 171 l~~~gifvItSCN--~T~dELv~~f~~ 195 (227)
T KOG1271|consen 171 LSPGGIFVITSCN--FTKDELVEEFEN 195 (227)
T ss_pred cCCCcEEEEEecC--ccHHHHHHHHhc
Confidence 9999999998754 344566666643
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-18 Score=173.52 Aligned_cols=124 Identities=24% Similarity=0.429 Sum_probs=107.9
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccC
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTS 127 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~ 127 (772)
.......+...+.. .++.+|||+|||||.++..+++. |..+|+++|+|+.|++.++++....+. +++|+++|+++
T Consensus 36 ~~~Wr~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 36 HRLWRRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN 112 (238)
T ss_pred hHHHHHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh
Confidence 33444555666554 47899999999999999999987 656899999999999999999865433 49999999999
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
|| |+|++||+|.+...|+++.+ .+++|+|++|||||||+++|..++++.
T Consensus 113 LP-f~D~sFD~vt~~fglrnv~d-------~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 113 LP-FPDNSFDAVTISFGLRNVTD-------IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CC-CCCCccCEEEeeehhhcCCC-------HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99 99999999999999999986 689999999999999999999999874
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-17 Score=173.80 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC----CCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg----~~~~ 591 (772)
...||+.| ++++++.+ +++.+||+||+|+|.++..+..+.+..++++||+|+.|++.|+++|. ...+
T Consensus 55 e~~y~e~l-~~~~l~~~--------~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~ 125 (270)
T TIGR00417 55 EFIYHEMI-AHVPLFTH--------PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDD 125 (270)
T ss_pred HHHHHHHh-hhhHhhcC--------CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccC
Confidence 36687654 45555543 56779999999999999988887666799999999999999999983 2357
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
++++++++||++|++... .+||+||+|...+. .|+..+++.+
T Consensus 126 ~~v~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~~~------~~~~~l~~~e 167 (270)
T TIGR00417 126 PRVDLQIDDGFKFLADTE--------------------------------NTFDVIIVDSTDPV------GPAETLFTKE 167 (270)
T ss_pred CceEEEECchHHHHHhCC--------------------------------CCccEEEEeCCCCC------CcccchhHHH
Confidence 899999999999998743 57999999875442 2567789999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--c---CCceEEEEEecC
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E---EDVNLVLFGLSS 730 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~---~~~N~vl~a~~~ 730 (772)
|++.++++|+|||++++|..+. .......+.++++++|+++..+.. + .+....++|++.
T Consensus 168 f~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 168 FYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred HHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 9999999999999999996543 245567788999999999766543 2 334667888873
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=167.90 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=119.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQ 590 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~~ 590 (772)
.+-||. |+++.+|.+| ++|++|||||.|.|+..+-+.++ |. +|+.||||++|+++|++|| ++ +
T Consensus 55 EfiYHE-mLvHppl~~h--------~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~-~ 122 (262)
T PRK00536 55 LHIESE-LLAHMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVK-N 122 (262)
T ss_pred hhhHHH-HHHHHHHhhC--------CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhh-c
Confidence 356775 5667778776 89999999999999998888887 44 9999999999999999998 33 7
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
|||+++++ ++.+.. ..+||+||+|. . .++
T Consensus 123 DpRv~l~~-----~~~~~~-------------------------------~~~fDVIIvDs--~-------------~~~ 151 (262)
T PRK00536 123 NKNFTHAK-----QLLDLD-------------------------------IKKYDLIICLQ--E-------------PDI 151 (262)
T ss_pred CCCEEEee-----hhhhcc-------------------------------CCcCCEEEEcC--C-------------CCh
Confidence 99999997 333321 25799999974 1 348
Q ss_pred HHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ecC-CceEEEEEecCC
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSE 731 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~vl~a~~~~ 731 (772)
+|++.++++|+|+|++|...-+. .......+.++++++|+.+..+. ++. +....++|++..
T Consensus 152 ~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~ 217 (262)
T PRK00536 152 HKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_pred HHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCC
Confidence 99999999999999999986554 35667888999999999765553 222 345577787653
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=166.15 Aligned_cols=118 Identities=25% Similarity=0.445 Sum_probs=88.8
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCccccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~ 132 (772)
.+.+.+.. .++.+|||+|||||.++..+++. + ...|+|+|+|+.|++.++++.... ..+++|+++|++++| ++
T Consensus 38 ~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~ 113 (233)
T PF01209_consen 38 KLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FP 113 (233)
T ss_dssp HHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-
T ss_pred HHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CC
Confidence 34455543 57889999999999999999886 3 347999999999999999887643 348999999999999 99
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++||+|++...++.+.+ ..++++|++|+|||||++++++++.+.
T Consensus 114 d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 999999999999998876 578999999999999999999998774
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-15 Score=169.22 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=93.5
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC--cccccC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQVFMD 133 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~--l~~~~~ 133 (772)
.+...+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.+++.. ...++++++++|+.+ ++ +++
T Consensus 28 ~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~-~~~ 101 (475)
T PLN02336 28 EILSLLPP---YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLN-ISD 101 (475)
T ss_pred HHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccC-CCC
Confidence 34555543 356799999999999999999875 47999999999999876543 334679999999974 56 778
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++||+|++..+++++.+++ ...++++++++|||||++++...
T Consensus 102 ~~fD~I~~~~~l~~l~~~~-----~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKE-----VENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCEEEEehhhhHHhCCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999999999996643 67999999999999999988653
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=158.77 Aligned_cols=141 Identities=19% Similarity=0.282 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 004133 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (772)
Q Consensus 29 ~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~ 108 (772)
+||+++|+... .-|... .....+..++......++.+|||+|||.|+.+..|+++|+ +|+|+|+|+.+|+.+.
T Consensus 1 ~~Wd~ry~~~~----~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 1 EFWHERWQEGQ----IGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFF 73 (213)
T ss_pred ChHHHHHhcCC----CCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence 48999997653 336432 2223333443321112567999999999999999999999 5999999999999864
Q ss_pred HHhcc-------------CCCCcEEEEeeccCccccc-CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeE
Q 004133 109 RRNVR-------------DRSDMRWRVMDMTSMQVFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 174 (772)
Q Consensus 109 ~~~~~-------------~~~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~ 174 (772)
+.+.. ...++++.++|+.+++ .. .+.||.|++..+++++..+. +..+++.+.++|||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~~fD~i~D~~~~~~l~~~~-----R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 74 AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT-AADLGPVDAVYDRAALIALPEEM-----RQRYAAHLLALLPPGAR 147 (213)
T ss_pred HHcCCCcceeccccceeeecCceEEEEccCCCCC-cccCCCcCEEEechhhccCCHHH-----HHHHHHHHHHHcCCCCe
Confidence 43211 2346899999999987 32 46899999999999885433 78999999999999999
Q ss_pred EEEEEcCc
Q 004133 175 FVCLTLAE 182 (772)
Q Consensus 175 ~ii~~~~~ 182 (772)
++++++..
T Consensus 148 ~ll~~~~~ 155 (213)
T TIGR03840 148 QLLITLDY 155 (213)
T ss_pred EEEEEEEc
Confidence 88877653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=173.85 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-------
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 589 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------- 589 (772)
..||+.++ ..++..+ +++++||+||+|+|.++..+.++.+..+|++||+||+|+++|+++|.+.
T Consensus 281 ~~y~e~l~-~~~l~~~--------~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~ 351 (521)
T PRK03612 281 YRYHEALV-HPAMAAS--------ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL 351 (521)
T ss_pred HHHHHHHH-HHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc
Confidence 44777654 4444433 6788999999999999998887644369999999999999999965332
Q ss_pred CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc
Q 004133 590 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 669 (772)
Q Consensus 590 ~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~ 669 (772)
+|+|++++++||++|+++.. .+||+||+|...+. . ..+..+++
T Consensus 352 ~dprv~vi~~Da~~~l~~~~--------------------------------~~fDvIi~D~~~~~--~---~~~~~L~t 394 (521)
T PRK03612 352 DDPRVTVVNDDAFNWLRKLA--------------------------------EKFDVIIVDLPDPS--N---PALGKLYS 394 (521)
T ss_pred CCCceEEEEChHHHHHHhCC--------------------------------CCCCEEEEeCCCCC--C---cchhccch
Confidence 47899999999999997643 57999999864432 1 11467999
Q ss_pred HHHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHh-ccceEEEe--ecCC-ceEEEEEecC
Q 004133 670 GSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCLQ--LEED-VNLVLFGLSS 730 (772)
Q Consensus 670 ~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~v-F~~v~~~~--~~~~-~N~vl~a~~~ 730 (772)
.+|++.++++|+|||++++|..++ .......+.++++++ | .+..+. ++.- .....+|++.
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~as~~ 460 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLAGAG 460 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHeeeCC
Confidence 999999999999999999997544 345556788999999 8 543332 2222 2236667665
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=153.92 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=106.1
Q ss_pred CHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~ 106 (772)
+.++|+++|.... .-|... ...+.+.+++......++.+|||+|||.|+.+..|+++|+ +|+|||+|+.+|+.
T Consensus 2 ~~~~Wd~rw~~~~----~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 2 DPDFWHEKWAENQ----IGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred CHhHHHHHHcCCC----CCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 3679999998763 225332 3444555555321123567999999999999999999999 59999999999998
Q ss_pred HHHHhcc-------------CCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCe
Q 004133 107 MLRRNVR-------------DRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 107 a~~~~~~-------------~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 173 (772)
+.+.... ...++++.++|+.+++....+.||.|++..+++++.... +.++++.+.++|+|||
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-----R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 75 FFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-----RERYVQQLAALLPAGC 149 (218)
T ss_pred HHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-----HHHHHHHHHHHcCCCC
Confidence 7543211 134689999999998612236899999999999885533 8899999999999998
Q ss_pred EEEEEEc
Q 004133 174 KFVCLTL 180 (772)
Q Consensus 174 ~~ii~~~ 180 (772)
+++++++
T Consensus 150 ~~~l~~~ 156 (218)
T PRK13255 150 RGLLVTL 156 (218)
T ss_pred eEEEEEE
Confidence 7665443
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=152.65 Aligned_cols=165 Identities=17% Similarity=0.291 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 004133 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (772)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~ 105 (772)
.+.+||+++|++...+ |... ...+.|.+++......++.+||++|||.|..+..|++.|+. |+|+|+|+.+|+
T Consensus 7 ~~~~fW~~rw~~~~~~----f~~~--~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~ 79 (226)
T PRK13256 7 NNNQYWLDRWQNDDVG----FCQE--SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVL 79 (226)
T ss_pred CCHHHHHHHHhcCCCC----CccC--CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHH
Confidence 3578999999977433 6544 34455555554432235689999999999999999999995 999999999999
Q ss_pred HHHHHhc-------------cCCCCcEEEEeeccCccccc---CCCccEEEecccccccccCccchHHHHHHHHHHHhcc
Q 004133 106 DMLRRNV-------------RDRSDMRWRVMDMTSMQVFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 169 (772)
Q Consensus 106 ~a~~~~~-------------~~~~~v~f~~~D~~~l~~~~---~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvL 169 (772)
.+.+.+. ....++++.++|+.+++ .. .+.||+|++.++|.++..+ .+.++.+.+.++|
T Consensus 80 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~-~~~~~~~~fD~VyDra~~~Alpp~-----~R~~Y~~~l~~lL 153 (226)
T PRK13256 80 SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP-KIANNLPVFDIWYDRGAYIALPND-----LRTNYAKMMLEVC 153 (226)
T ss_pred HHHHHcCCCcceecccccceeccCceEEEEccCcCCC-ccccccCCcCeeeeehhHhcCCHH-----HHHHHHHHHHHHh
Confidence 9866431 12347899999999986 32 2689999999999999653 3899999999999
Q ss_pred ccCeEEEEEEcCchh--------h-hhcccccccCCcEEEEEE
Q 004133 170 KSGGKFVCLTLAESH--------V-LGLLFPKFRFGWKMSVHA 203 (772)
Q Consensus 170 kpGG~~ii~~~~~~~--------~-~~~l~~~~~~~w~~~~~~ 203 (772)
+|||.++++++..+. + ..++...|...|.+..-.
T Consensus 154 ~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~ 196 (226)
T PRK13256 154 SNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELID 196 (226)
T ss_pred CCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEee
Confidence 999999998874221 1 124444555556655543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=134.58 Aligned_cols=95 Identities=29% Similarity=0.513 Sum_probs=81.9
Q ss_pred EEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCc
Q 004133 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPE 152 (772)
Q Consensus 73 LDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~ 152 (772)
||+|||+|..+..+++.+..+|+++|+|+.+++.++++... ..+.+.++|+++++ +++++||+|++.++++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~~~~-- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLP-FPDNSFDVVFSNSVLHHLED-- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSS-S-TT-EEEEEEESHGGGSSH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCc-cccccccccccccceeeccC--
Confidence 89999999999999999555899999999999999887743 45669999999999 99999999999999999933
Q ss_pred cchHHHHHHHHHHHhccccCeEEEE
Q 004133 153 LGHKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 153 ~~~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
..++++++.|+|||||++++
T Consensus 76 -----~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 -----PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----HHHHHHHHHHHEEEEEEEEE
T ss_pred -----HHHHHHHHHHHcCcCeEEeC
Confidence 68999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=156.37 Aligned_cols=120 Identities=25% Similarity=0.340 Sum_probs=99.6
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhc----cCCCCcEEEEeeccC
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNV----RDRSDMRWRVMDMTS 127 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~----~~~~~v~f~~~D~~~ 127 (772)
...+.+++.. .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++.. ....+++++++|+.+
T Consensus 62 r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 62 KRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 3334444543 56889999999999999988876 4 2479999999999999987642 123479999999999
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
++ +++++||+|++..+++++.+ ...++++++|+|||||++++.++..+.
T Consensus 139 lp-~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 139 LP-FDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred CC-CCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 99 99999999999999998865 578999999999999999999988643
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=147.33 Aligned_cols=114 Identities=25% Similarity=0.376 Sum_probs=93.5
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~ 134 (772)
.+.+.+.. .++.+|||+|||+|.++..|++.|+ +|+|+|+|+.|++.++++....+ .++++.+.|+.+++ + ++
T Consensus 21 ~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~ 94 (197)
T PRK11207 21 EVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-F-DG 94 (197)
T ss_pred HHHHhccc---CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC-c-CC
Confidence 34455544 4678999999999999999999987 69999999999999987765443 35899999998887 5 46
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+||+|++..+++++...+ ...+++++.++|||||+++++.+
T Consensus 95 ~fD~I~~~~~~~~~~~~~-----~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CcCEEEEecchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEE
Confidence 799999999998875432 78999999999999999766543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=157.97 Aligned_cols=107 Identities=20% Similarity=0.366 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..|++. |. +|+|+|+|+.+++.++++....+ .+++|+++|+.+++ +++++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECC
Confidence 46789999999999999999986 44 79999999999999987765433 46999999999999 9999999999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++|+.+ ..+++++++|+|||||++++.++..
T Consensus 195 ~~~h~~d-------~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 195 SGEHMPD-------KRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred chhccCC-------HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 9999865 5789999999999999999988764
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=146.60 Aligned_cols=130 Identities=19% Similarity=0.290 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC------CeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccCcccccCCC
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~------~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~l~~~~~~s 135 (772)
.+++++||++||||.++..+.+. +. .+|+.+||++.|++.++++..+.. ..+.|+++|++++| |++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCc
Confidence 67899999999999999888876 22 679999999999999998874422 24899999999999 99999
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
||.....+.+....+ .++.++|++|||||||+|.|..|++.. .+.+..|...|.+.+-++.+
T Consensus 178 ~D~yTiafGIRN~th-------~~k~l~EAYRVLKpGGrf~cLeFskv~--~~~l~~fy~~ysf~VlpvlG 239 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTH-------IQKALREAYRVLKPGGRFSCLEFSKVE--NEPLKWFYDQYSFDVLPVLG 239 (296)
T ss_pred ceeEEEecceecCCC-------HHHHHHHHHHhcCCCcEEEEEEccccc--cHHHHHHHHhhhhhhhchhh
Confidence 999999999998877 679999999999999999999998643 23445555566666644443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-14 Score=142.15 Aligned_cols=114 Identities=27% Similarity=0.398 Sum_probs=93.0
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCc
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETF 136 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sf 136 (772)
+.+.+.. .++.++||+|||.|+.+.+|++.|+ +|+++|+|+.+++.+++.+.....+++..+.|+.+.. ++ +.|
T Consensus 22 v~~a~~~---~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPL---LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-FP-EEY 95 (192)
T ss_dssp HHHHCTT---S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--T-TTE
T ss_pred HHHHHhh---cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-cc-CCc
Confidence 4444444 3578999999999999999999999 6999999999999998887777778999999999988 64 789
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|+|++..+++++..+. +.++++.+...++|||++++.++.
T Consensus 96 D~I~st~v~~fL~~~~-----~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 96 DFIVSTVVFMFLQREL-----RPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEEESSGGGS-GGG-----HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CEEEEEEEeccCCHHH-----HHHHHHHHHhhcCCcEEEEEEEec
Confidence 9999999999987654 789999999999999999987653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-15 Score=150.95 Aligned_cols=140 Identities=26% Similarity=0.377 Sum_probs=103.6
Q ss_pred CHHHHHHHHHhcCCCCccccccc--hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAE--WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~--~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I 104 (772)
+.+||+++|++...+ |... .+.+...+.. +.. .++.+||.+|||.|.....|+++|+ +|+|+|+|+.+|
T Consensus 2 ~~~~W~~~w~~~~~~----w~~~~~~p~L~~~~~~-l~~---~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai 72 (218)
T PF05724_consen 2 DPEFWEERWQEGQTP----WDQGEPNPALVEYLDS-LAL---KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAI 72 (218)
T ss_dssp HHHHHHHHHHTT--T----T--TTSTHHHHHHHHH-HTT---STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHH
T ss_pred CHHHHHHHHhcCCCC----CCCCCCCHHHHHHHHh-cCC---CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHH
Confidence 368999999987433 6543 3344444444 222 5678999999999999999999998 699999999999
Q ss_pred HHHHHHhcc-------------CCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhcccc
Q 004133 105 SDMLRRNVR-------------DRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 171 (772)
Q Consensus 105 ~~a~~~~~~-------------~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkp 171 (772)
+.+.+.+.. ...++++.++|+.+++.-..++||+|++.+.|.++.... +.++.+.+.++|+|
T Consensus 73 ~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-----R~~Ya~~l~~ll~p 147 (218)
T PF05724_consen 73 EQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-----RERYAQQLASLLKP 147 (218)
T ss_dssp HHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-----HHHHHHHHHHCEEE
T ss_pred HHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-----HHHHHHHHHHHhCC
Confidence 998554321 123578999999998722235899999999999997644 89999999999999
Q ss_pred CeEEEEEEc
Q 004133 172 GGKFVCLTL 180 (772)
Q Consensus 172 GG~~ii~~~ 180 (772)
||.++++++
T Consensus 148 ~g~~lLi~l 156 (218)
T PF05724_consen 148 GGRGLLITL 156 (218)
T ss_dssp EEEEEEEEE
T ss_pred CCcEEEEEE
Confidence 999555544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=131.49 Aligned_cols=106 Identities=27% Similarity=0.371 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc--cCCCCcEEEEeec-cCcccccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDM-TSMQVFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~--~~~~~v~f~~~D~-~~l~~~~~~sfDvVi~~~ 143 (772)
|+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++.. ....+++|+++|+ .... ..+.||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECC
Confidence 5789999999999999999993 34479999999999999998883 3456899999999 3333 346799999999
Q ss_pred -cccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 144 -GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 144 -~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++++...+ ...++++.+.+.|+|||++++.+
T Consensus 79 ~~~~~~~~~~----~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLD----ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccccccchh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 566454321 26889999999999999999875
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-14 Score=142.76 Aligned_cols=114 Identities=19% Similarity=0.301 Sum_probs=93.4
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~s 135 (772)
.+...+.. .++.+|||+|||+|.++..+++.|+ +|+++|+|+.|++.++++....+.++.+.++|+...+ + +++
T Consensus 21 ~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~ 94 (195)
T TIGR00477 21 AVREAVKT---VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-L-NED 94 (195)
T ss_pred HHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-c-cCC
Confidence 34555554 3568999999999999999999987 6999999999999998776555556888889987766 4 368
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
||+|++..+++++..+. ...++++++++|||||+++++.+
T Consensus 95 fD~I~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGR-----VPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCEEEEecccccCCHHH-----HHHHHHHHHHHhCCCcEEEEEEe
Confidence 99999999998875432 67999999999999999777654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-14 Score=140.08 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHhcCCCCcc--ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHH
Q 004133 26 TSKENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (772)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~ 103 (772)
.+.++|++.+.+. ++-.| .||.... ....+...+.. ..-.++||+|||+|.++..|+.+. ..++++|+|+.+
T Consensus 4 ~~~~~l~~~la~~-DPW~~~~~~YE~~K-~~~~l~aaLp~---~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~A 77 (201)
T PF05401_consen 4 DNYQLLNRELAND-DPWGFETSWYERRK-YRATLLAALPR---RRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRA 77 (201)
T ss_dssp SHHHHHHHHHTSS-SGGGTTT-HHHHHH-HHHHHHHHHTT---SSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHH
T ss_pred cHHHHHHHHhCCC-CCCCCCCCHHHHHH-HHHHHHHhcCc---cccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHH
Confidence 4678999998876 23222 1444311 11223333543 355799999999999999999984 579999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 104 ISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 104 I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+.|+++.. ..++++|.++|+.+.. +.+.||+|+...+++++.+.++ +..++..+...|+|||.+++.++..
T Consensus 78 l~~Ar~Rl~-~~~~V~~~~~dvp~~~--P~~~FDLIV~SEVlYYL~~~~~----L~~~l~~l~~~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 78 LARARERLA-GLPHVEWIQADVPEFW--PEGRFDLIVLSEVLYYLDDAED----LRAALDRLVAALAPGGHLVFGHARD 149 (201)
T ss_dssp HHHHHHHTT-T-SSEEEEES-TTT-----SS-EEEEEEES-GGGSSSHHH----HHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred HHHHHHhcC-CCCCeEEEECcCCCCC--CCCCeeEEEEehHhHcCCCHHH----HHHHHHHHHHHhCCCCEEEEEEecC
Confidence 999999985 4579999999998864 8899999999999999975322 7889999999999999999988754
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-14 Score=145.41 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=97.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||-|.+++.|++.|+ +|||+|+|+.+|+.|+..+......+.|.+..+.++. ...++||+|++..++.|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 789999999999999999999996 7999999999999999888777778889999999987 55689999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+.++ ..+++.+.+++||||.+++.+...
T Consensus 137 v~dp-------~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 137 VPDP-------ESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cCCH-------HHHHHHHHHHcCCCcEEEEecccc
Confidence 9885 479999999999999999999874
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=140.89 Aligned_cols=126 Identities=23% Similarity=0.307 Sum_probs=101.7
Q ss_pred cchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEee
Q 004133 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMD 124 (772)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D 124 (772)
.........+...+.. .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++.... ..+++++++|
T Consensus 28 ~~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d 104 (231)
T TIGR02752 28 QRHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN 104 (231)
T ss_pred CchHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3333344445556654 56789999999999999999876 3 247999999999999998876433 2478999999
Q ss_pred ccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 125 MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+.+++ +++++||+|++..+++++.+ ..++++++.++|+|||++++.+..++.
T Consensus 105 ~~~~~-~~~~~fD~V~~~~~l~~~~~-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 105 AMELP-FDDNSFDYVTIGFGLRNVPD-------YMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred hhcCC-CCCCCccEEEEecccccCCC-------HHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 99988 88899999999998888765 568999999999999999998876544
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-14 Score=127.32 Aligned_cols=96 Identities=30% Similarity=0.477 Sum_probs=81.1
Q ss_pred EEEEcCCCchhHHHHHHc---CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccc-cc
Q 004133 72 ILVPGCGNSRLSEHLYDA---GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG-LD 146 (772)
Q Consensus 72 ILDlGCG~G~ls~~La~~---g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~-l~ 146 (772)
|||+|||+|..+..+++. +. .+++|+|+|+.|++.++++....+.+++|+++|+.+++ +.+++||+|++.+. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 799999999999999886 32 57999999999999999888766679999999999999 88999999999554 88
Q ss_pred ccccCccchHHHHHHHHHHHhccccCe
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG 173 (772)
++.+++ +.++++++.++|||||
T Consensus 80 ~~~~~~-----~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEE-----LEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHH-----HHHHHHHHHHTEEEEE
T ss_pred CCCHHH-----HHHHHHHHHHHhCCCC
Confidence 875543 8999999999999998
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=143.99 Aligned_cols=109 Identities=17% Similarity=0.296 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|..+..++.. +. +|+|+|+|+.|++.++++... ..++.|.++|+.+.+ +++++||+|++..++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~-~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKD-FPENTFDMIYSRDAI 127 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCC-CCCCCeEEEEEhhhH
Confidence 67899999999999999988765 44 799999999999999887643 457999999999988 889999999998888
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.|+...+ ...++++++++|||||++++..+...
T Consensus 128 ~h~~~~d-----~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 128 LHLSYAD-----KKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred HhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 7764322 67999999999999999999887543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=142.52 Aligned_cols=115 Identities=20% Similarity=0.347 Sum_probs=96.5
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~ 134 (772)
..+.+.+.. .+..+|||+|||+|.++..+...|. +|+++|+|+.|++.++++. ....|+++|+.+++ ++++
T Consensus 32 ~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~-~~~~ 102 (251)
T PRK10258 32 DALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD----AADHYLAGDIESLP-LATA 102 (251)
T ss_pred HHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCc-CCCC
Confidence 334444433 3568999999999999999988775 7999999999999987664 23578999999999 8899
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
+||+|++..+++++.+ ...++.++.++|+|||.+++.++....+
T Consensus 103 ~fD~V~s~~~l~~~~d-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 103 TFDLAWSNLAVQWCGN-------LSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred cEEEEEECchhhhcCC-------HHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 9999999999988765 5689999999999999999999887654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=149.27 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..|+..|. +|+|||+|+.+++.++++..... .+++|+++|+.+++ +.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHH
Confidence 567999999999999999998876 69999999999999987653322 37999999999998 788899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.+ ...+++++.++|||||.+++.++..
T Consensus 209 eHv~d-------~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 209 EHVAN-------PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HhcCC-------HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 99987 3689999999999999999998764
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=142.41 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=118.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-------CCCCCCCeEEEEccHHHHHHhhcccCc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-------GFTQDKSLKVHITDGIKFVREMKSSSA 613 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-------g~~~~~rl~v~i~Dg~~~l~~~~~~~~ 613 (772)
+...+|||+|.|.|...+-|.+.....+|+-||+||.|+++|++.- |--.|+|++|+++||.+|++..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---- 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---- 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc----
Confidence 5668999999999999888888744679999999999999998543 22268999999999999999976
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 614 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+||+||+|+-+++..+ -..+++.+|+..++++|+++|++|+.--+.
T Consensus 364 ----------------------------~~fD~vIVDl~DP~tps-----~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 364 ----------------------------DMFDVVIVDLPDPSTPS-----IGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ----------------------------ccccEEEEeCCCCCCcc-----hhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 58999999995553211 467899999999999999999999987554
Q ss_pred --ChhHHHHHHHHHHHhccceEEEe--ecC-CceEEEEEecCCC
Q 004133 694 --SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSES 732 (772)
Q Consensus 694 --~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~vl~a~~~~~ 732 (772)
.+..+=.+.+++++.=-.++-+. ++. +..-.++|.+.+.
T Consensus 411 y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~ 454 (508)
T COG4262 411 YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDA 454 (508)
T ss_pred ccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccC
Confidence 23333446777777654433332 333 3345777777664
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=130.79 Aligned_cols=107 Identities=26% Similarity=0.383 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHH-cC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc-ccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYD-AG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV-FMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~-~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~-~~~~sfDvVi~~ 142 (772)
+.+.+|||+|||+|.++..+++ .+ ..+++|+|+|+.||+.|++++.... .+++|.++|+.+++. ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 3578999999999999999994 32 3579999999999999998765443 479999999999762 12 799999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++++++.+ ...+++++.++|++||++++..+.
T Consensus 81 ~~l~~~~~-------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD-------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC-------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99988866 468999999999999999998877
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=143.24 Aligned_cols=147 Identities=22% Similarity=0.342 Sum_probs=106.5
Q ss_pred hcccccCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C---CCe
Q 004133 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G---FHG 93 (772)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g---~~~ 93 (772)
+|..........||.+.+..+ ..|.+.+.|..+...+...+......+..+|||+|||+|.++..+++. + ...
T Consensus 38 l~~~~~~~~~~~d~~~~~~ar---~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~ 114 (272)
T PRK11088 38 LPVQHKRSKDPGDNKEMMQAR---RAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQ 114 (272)
T ss_pred ccccccCCCCCCcCHHHHHHH---HHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCe
Confidence 454334444556777777655 334444555556655545443211134578999999999999988775 1 236
Q ss_pred EEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCe
Q 004133 94 ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 94 V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 173 (772)
++|+|+|+.|++.|+++. +++.|.++|+.+++ +++++||+|++... + ..+++++|+|||||
T Consensus 115 v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp-~~~~sfD~I~~~~~------~--------~~~~e~~rvLkpgG 175 (272)
T PRK11088 115 LFGLDISKVAIKYAAKRY----PQVTFCVASSHRLP-FADQSLDAIIRIYA------P--------CKAEELARVVKPGG 175 (272)
T ss_pred EEEECCCHHHHHHHHHhC----CCCeEEEeecccCC-CcCCceeEEEEecC------C--------CCHHHHHhhccCCC
Confidence 999999999999886553 57899999999999 99999999997432 1 24578999999999
Q ss_pred EEEEEEcCchhhh
Q 004133 174 KFVCLTLAESHVL 186 (772)
Q Consensus 174 ~~ii~~~~~~~~~ 186 (772)
++++++.+..|..
T Consensus 176 ~li~~~p~~~~l~ 188 (272)
T PRK11088 176 IVITVTPGPRHLF 188 (272)
T ss_pred EEEEEeCCCcchH
Confidence 9999988876653
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-13 Score=140.90 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=93.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..+++.|. +|+++|+|+.|++.|+++....+ .+++++++|+.+++.+.+++||+|++..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 467999999999999999999976 69999999999999988775443 468999999988743567899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++.+ ...+++++.++|||||++++..+....
T Consensus 123 ~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 123 EWVAD-------PKSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred HhhCC-------HHHHHHHHHHHcCCCeEEEEEEECccH
Confidence 99866 358999999999999999988776543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-13 Score=143.06 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..++..|+ +|+|+|+|+.+++.++++....+.++++.+.|+.... + +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhh
Confidence 346999999999999999999987 6999999999999998887666668999999998876 4 689999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+..+. ...+++++.++|+|||+++++.
T Consensus 197 l~~~~-----~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 LNRER-----IPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCHHH-----HHHHHHHHHHhcCCCcEEEEEE
Confidence 75432 7899999999999999977654
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-13 Score=144.07 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=93.3
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHH--hccCCCCcEEEEeeccCcccccC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~--~~~~~~~v~f~~~D~~~l~~~~~ 133 (772)
.+..++.. .++.+|||+|||+|.++..++..|...|+|+|+|+.++.+++.. ......++.|+.+|+.+++ + +
T Consensus 113 ~l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~ 187 (322)
T PRK15068 113 RVLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-L 187 (322)
T ss_pred HHHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-c
Confidence 34455543 35789999999999999999999877799999999999865433 2222457999999999998 6 7
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++||+|++.++++|..+ ...+|++++++|+|||.+++.++
T Consensus 188 ~~FD~V~s~~vl~H~~d-------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRS-------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CCcCEEEECChhhccCC-------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 89999999999999865 46899999999999999998764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=149.19 Aligned_cols=108 Identities=22% Similarity=0.337 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++......+++|.++|+.+++ +++++||+|++.+++.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCccc
Confidence 467899999999999999888763237999999999999998776544557999999999988 8889999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+.+ ...++++++|+|||||++++.++..
T Consensus 344 h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 344 HIQD-------KPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccCC-------HHHHHHHHHHHcCCCeEEEEEEecc
Confidence 9976 4689999999999999999988754
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=133.74 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..|... +..+++|+|+|+.|++.|+++. +++.+.++|+.+ + +++++||+|++.+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~-~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-P-FKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-C-CCCCCEEEEEECChh
Confidence 35679999999999999999886 4457999999999999997654 467899999988 7 889999999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+.++ ...++++++.|++ ++++++..+-
T Consensus 116 ~hl~p~-----~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 116 IHINPD-----NLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hhCCHH-----HHHHHHHHHHhhc--CcEEEEEEee
Confidence 998532 2789999999998 4566666543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=136.30 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~---g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.++++..... .+++++++|+.+++ ++ .+|+|++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-IE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-CC--CCCEEehh
Confidence 5789999999999999888762 23479999999999999998875432 37999999999887 54 59999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.+++++..++ ...++++++++|||||.+++.+
T Consensus 133 ~~l~~l~~~~-----~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 133 FTLQFLEPSE-----RQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hHHHhCCHHH-----HHHHHHHHHHhcCCCCEEEEEE
Confidence 9999886432 6789999999999999999986
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-12 Score=125.70 Aligned_cols=111 Identities=30% Similarity=0.480 Sum_probs=92.0
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~ 132 (772)
+...+..+... ..++.+|||+|||+|.++..+++.|+ +++|+|+|+.+++. ..+.+...+..... .+
T Consensus 9 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~-~~ 75 (161)
T PF13489_consen 9 YADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPP-FP 75 (161)
T ss_dssp HHHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHH-CH
T ss_pred HHHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhh-cc
Confidence 44445555532 14688999999999999999988888 79999999999876 35566777666666 78
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++||+|++..+|+|+.+ ...+++++.++|||||++++.+....
T Consensus 76 ~~~fD~i~~~~~l~~~~d-------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPD-------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESSGGGSSH-------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHHHhhccc-------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999999999986 57999999999999999999987653
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-12 Score=135.77 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.++++ +++|+++|+.+++ ++++||+|++..++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--~~~~fD~v~~~~~l 99 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK--PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC--CCCCceEEEEehhh
Confidence 467899999999999999998872 24799999999999988642 5889999998875 56799999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++.+ ...++++++++|||||++++...
T Consensus 100 ~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 100 QWVPE-------HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhCCC-------HHHHHHHHHHhCCCCcEEEEEcC
Confidence 99865 46899999999999999988754
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-12 Score=126.57 Aligned_cols=139 Identities=17% Similarity=0.064 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|..+..++.. +..+|+++|+|+.|++.++++...... +++++++|+.+++ . .++||+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~~~~- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTSRAV- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEEccc-
Confidence 4789999999999999988864 335799999999999999887755443 5999999999987 5 779999998642
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEEEEEcCCCCCCCCCcceEEEEEEe
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADK 223 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K 223 (772)
.+ ...+++.++++|||||++++..... ....+.... ..+|.+...-..+.+ +..-++++.+++|
T Consensus 122 ---~~-------~~~~l~~~~~~LkpGG~lv~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 186 (187)
T PRK00107 122 ---AS-------LSDLVELCLPLLKPGGRFLALKGRD--PEEEIAELPKALGGKVEEVIELTLP--GLDGERHLVIIRK 186 (187)
T ss_pred ---cC-------HHHHHHHHHHhcCCCeEEEEEeCCC--hHHHHHHHHHhcCceEeeeEEEecC--CCCCcEEEEEEec
Confidence 12 5689999999999999999886442 222222211 127765443333222 2223566777665
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=138.69 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH--HhccCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~--~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++..|...|+|+|+|+.|+.+++. +......++.+..+++.+++ . ..+||+|++.++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~gv 197 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMGV 197 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcch
Confidence 4678999999999999999988887779999999999986532 22233457889999999988 4 458999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++|+.+ ...+|++++++|||||.+++.++.
T Consensus 198 L~H~~d-------p~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 198 LYHRKS-------PLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred hhccCC-------HHHHHHHHHHhcCCCCEEEEEEEE
Confidence 999866 468999999999999999998753
|
Known examples to date are restricted to the proteobacteria. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-12 Score=133.74 Aligned_cols=100 Identities=23% Similarity=0.354 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.++++. +++.|..+|+.++. ++++||+|++..++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~--~~~~fD~v~~~~~l 103 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ--PPQALDLIFANASL 103 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC--CCCCccEEEEccCh
Confidence 56789999999999999999886 3457999999999999997664 46899999998775 45699999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++.+ ...++++++++|||||++++..
T Consensus 104 ~~~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 104 QWLPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhCCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 99865 4689999999999999998864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=131.50 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+||.+|+|+|+++..+... +..+|++||+++..+++|++.+.+. ...+++++.+|..+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~----------- 606 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAR----------- 606 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcC-----------
Confidence 479999999999999988876 3347999999999999999998432 22589999999999987642
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~-Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.+||+||+|--.-.....+.- ....=.-.+++..+.++|+|||++++-...
T Consensus 607 ---------------------~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 607 ---------------------EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ---------------------CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 569999997432111000000 000001245788888999999999875433
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-12 Score=135.70 Aligned_cols=148 Identities=23% Similarity=0.343 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 591 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~~~ 591 (772)
+.| +-|++.+++..+ ++|+++||||.|.|...+-...|-..-.|+.+|||..|+++.++|+ |+ ++
T Consensus 105 ~~Y-qemi~~l~l~s~--------~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~ 174 (337)
T KOG1562|consen 105 FAY-QEMIAHLALCSH--------PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EG 174 (337)
T ss_pred ccc-eeeeeccccccC--------CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CC
Confidence 445 468888888765 7899999999999988776666633458999999999999999999 65 78
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+++.+++|||..|++..+ ...||+||+|.+ |+.+ |...++...
T Consensus 175 ~~v~l~iGDG~~fl~~~~-------------------------------~~~~dVii~dss--dpvg----pa~~lf~~~ 217 (337)
T KOG1562|consen 175 KKVKLLIGDGFLFLEDLK-------------------------------ENPFDVIITDSS--DPVG----PACALFQKP 217 (337)
T ss_pred CceEEEeccHHHHHHHhc-------------------------------cCCceEEEEecC--Cccc----hHHHHHHHH
Confidence 999999999999999986 367999999664 4433 788899999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccc
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNH 711 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~ 711 (772)
+++.+++.|+++|+++..--|- ...+.+...+..+.+|+.
T Consensus 218 ~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~ 259 (337)
T KOG1562|consen 218 YFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDL 259 (337)
T ss_pred HHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCc
Confidence 9999999999999998653221 233445556666778883
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-12 Score=128.60 Aligned_cols=150 Identities=21% Similarity=0.285 Sum_probs=112.8
Q ss_pred CHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-C--CeEEEEeCCHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-F--HGITNVDFSKVV 103 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~--~~V~gvDiS~~~ 103 (772)
...|||.+|.... ..| +.+..-+...+..++.... ++..+|||+|||.|.....+.+.. . -.|+++|+|+.+
T Consensus 35 ~~k~wD~fy~~~~--~rF--fkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A 109 (264)
T KOG2361|consen 35 ASKYWDTFYKIHE--NRF--FKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109 (264)
T ss_pred hhhhhhhhhhhcc--ccc--cchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHH
Confidence 4679999998774 222 4444444444555554311 223389999999999998887752 1 359999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeeccCcc---cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 104 ISDMLRRNVRDRSDMRWRVMDMTSMQ---VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 104 I~~a~~~~~~~~~~v~f~~~D~~~l~---~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
|+..++.......++.-.+.|++... ....+++|+|++..+|.++.++. ...++++++++|||||.+++-+|
T Consensus 110 i~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-----~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-----MQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred HHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-----HHHHHHHHHHHhCCCcEEEEeec
Confidence 99887665444456777777877632 25678999999999999997644 88999999999999999999999
Q ss_pred Cchhhh
Q 004133 181 AESHVL 186 (772)
Q Consensus 181 ~~~~~~ 186 (772)
+...+.
T Consensus 185 g~~Dla 190 (264)
T KOG2361|consen 185 GRYDLA 190 (264)
T ss_pred ccchHH
Confidence 977654
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=132.09 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.++++. .++++|+.++| +++++||+|++..++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp-~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALP-FRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCC-CCCCCEEEEEecChhhc
Confidence 46899999999999999998873237999999999999886542 46899999999 99999999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+.+ ..+++++++|+|||. ++++.++.+
T Consensus 123 ~~d-------~~~~l~e~~RvLkp~--~~ile~~~p 149 (226)
T PRK05785 123 SDN-------IEKVIAEFTRVSRKQ--VGFIAMGKP 149 (226)
T ss_pred cCC-------HHHHHHHHHHHhcCc--eEEEEeCCC
Confidence 765 578999999999994 334444443
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=126.14 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcE-EEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMR-WRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~-f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.....|||+|||||..-.+.-.....+||++|.++.|-+.+.+.+.+.. +++. |++++.++++.+++++||+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3456789999999999876654444479999999999999988876554 4676 9999999999889999999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+...+ ..+.|+++.|+|||||+++++....
T Consensus 155 LCSve~-------~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 155 LCSVED-------PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EeccCC-------HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 998876 4699999999999999999987543
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=134.85 Aligned_cols=117 Identities=20% Similarity=0.319 Sum_probs=99.6
Q ss_pred HHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCC
Q 004133 58 ISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 58 ~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~ 134 (772)
...++++...|+++|||||||-|.++.++++. |. +|+|+++|+++.+.++++....+. ++++...|..++. +
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e 136 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----E 136 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----c
Confidence 33344444589999999999999999999998 55 799999999999999997765544 5889999988876 4
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.||.|++.++++|+-... ...+|+.++++|+|||++++.++..++
T Consensus 137 ~fDrIvSvgmfEhvg~~~-----~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 137 PFDRIVSVGMFEHVGKEN-----YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ccceeeehhhHHHhCccc-----HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 499999999999997643 789999999999999999999988765
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-12 Score=131.46 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~---g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++.... ..+++++++|+.+++ ++ .+|+|++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IK--NASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC--CCCEEeee
Confidence 6789999999999999988875 2347999999999999998876432 236899999999887 54 58999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+++++.+.+ ...++++++++|||||++++.+.
T Consensus 130 ~~l~~~~~~~-----~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHHH-----HHHHHHHHHHhcCCCeEEEEeec
Confidence 9999885432 57899999999999999998864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-12 Score=138.87 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=89.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.|++.++++.. ..+++++.+|+.+++ +++++||+|++.+++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLP-FPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCC-CCCCceeEEEEcChh
Confidence 35789999999999999888775 34579999999999999987653 347899999999998 889999999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++.+ ...++++++++|||||+++++..
T Consensus 189 ~~~~d-------~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 189 EYWPD-------PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhCCC-------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 98765 35799999999999999988653
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=130.04 Aligned_cols=107 Identities=23% Similarity=0.341 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.+.+|||+|||+|.++..+++.+. .+++++|+|+.+++.++++.. +++.++++|+.+.+ +++++||+|++..+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLP-LEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCC-CCCCceeEEEEhhhhh
Confidence 347999999999999999988753 458999999999998877663 47899999999998 8889999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
++.+ ...+++++.++|+|||++++.++....+
T Consensus 110 ~~~~-------~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 110 WCDD-------LSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred hccC-------HHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 8865 4689999999999999999998876554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.5e-12 Score=133.15 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=90.2
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCccccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~ 132 (772)
.+..++++...+|+.+|||||||.|.++..+++. |. +|+|+.+|+...+.++++....+ ..+++.+.|..+++
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 3445556656689999999999999999999998 86 69999999999999998886555 36899999998877
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.+||.|++.+++.|+.... +..+|+.+.++|||||++++.++...
T Consensus 126 -~~fD~IvSi~~~Ehvg~~~-----~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVGRKN-----YPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp --S-SEEEEESEGGGTCGGG-----HHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred -CCCCEEEEEechhhcChhH-----HHHHHHHHHHhcCCCcEEEEEecccc
Confidence 3999999999999995433 78999999999999999997765543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-12 Score=132.54 Aligned_cols=101 Identities=24% Similarity=0.408 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--------CcEEEEeeccCcccccCCCccEEE
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--------DMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--------~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
+.+|||+|||+|.+++.|++.|. +|+|||.++.||+.|+... ...| +++|.+.|++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhcc----cccceee
Confidence 47899999999999999999996 6999999999999998774 2222 3667778887766 4599999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+..+++|+.++ ..+++.+.++|||||++++.+...
T Consensus 164 csevleHV~dp-------~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 164 CSEVLEHVKDP-------QEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred eHHHHHHHhCH-------HHHHHHHHHHhCCCCceEeeehhh
Confidence 99999999874 689999999999999999998764
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=126.59 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=97.2
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
...+...+.. .++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++......++++.+.|+.+++ +
T Consensus 8 ~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~ 83 (241)
T PRK08317 8 RARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-F 83 (241)
T ss_pred HHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-C
Confidence 3344455544 578899999999999999998862 357999999999999998774344568999999999988 8
Q ss_pred cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++++||+|++..+++++.+ ...+++++.++|||||.+++...
T Consensus 84 ~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEEEEec
Confidence 8899999999999999876 46899999999999999998764
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=122.34 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.|++.++++....+ .+++++++|+.++. .+++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-L 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-h
Confidence 46899999999999999887663 3579999999999998877654433 36999999999875 467999999865 3
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+. ...+++.+.++|+|||++++..-
T Consensus 119 ~~----------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 AS----------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred hC----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 22 45788999999999999998753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=132.01 Aligned_cols=107 Identities=18% Similarity=0.302 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|..+..++.. |. .+|+++|+|+.+++.++++.... ..+++|.++|+.+++ +++++||+|++..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcC
Confidence 57899999999999988777664 43 36999999999999998876433 247899999999998 8889999999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++++..+ ...++++++++|||||++++.++.
T Consensus 155 v~~~~~d-------~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 155 VINLSPD-------KERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred cccCCCC-------HHHHHHHHHHHcCCCcEEEEEEee
Confidence 9987654 468999999999999999998754
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=142.30 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++....+.++.++++|+.+++ .+++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 5789999999999999888875 3357999999999999998876544557888999998875 2678899999999988
Q ss_pred ccccc----Cc--cchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALME----PE--LGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~----~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++.. .. .......+++++++++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 86532 00 0122378999999999999999999863
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=125.32 Aligned_cols=108 Identities=24% Similarity=0.363 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
.++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++.... ..++.+..+|+.+++ ++.++||+|++.
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~ 128 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIA 128 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEe
Confidence 467899999999999999998875 368999999999999998876442 346899999999988 778899999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.+++++.+ ...+++++.++|+|||+++++++..
T Consensus 129 ~~l~~~~~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 129 FGLRNVPD-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccccCCC-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 88887765 5689999999999999999887654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=130.49 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCch----hHHHHHHcC------CCeEEEEeCCHHHHHHHHHHhcc------------------------
Q 004133 68 PPPQILVPGCGNSR----LSEHLYDAG------FHGITNVDFSKVVISDMLRRNVR------------------------ 113 (772)
Q Consensus 68 ~~~~ILDlGCG~G~----ls~~La~~g------~~~V~gvDiS~~~I~~a~~~~~~------------------------ 113 (772)
++.+|+|+|||+|. ++..+++.+ ..+|+|+|+|+.||+.|++..-.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 444454431 13699999999999999864210
Q ss_pred ----CCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 114 ----DRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 114 ----~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
-...++|.++|+.+.+ ++.++||+|++.++++++..+. ..+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~~~-----~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDEPT-----QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCHHH-----HHHHHHHHHHHhCCCeEEEEEC
Confidence 0136899999999988 7789999999999999986533 6799999999999999999864
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-11 Score=119.36 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++......++++.++|+.+.. .++||+|+++..++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYL 93 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCC
Confidence 3567999999999999999999876 7999999999999998887655567889999987754 35899999988776
Q ss_pred ccccCc--------------cchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 147 ALMEPE--------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 147 ~l~~~~--------------~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
...... .+......+++++.++|||||+++++.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 554321 1112357899999999999999998875543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.7e-13 Score=118.43 Aligned_cols=96 Identities=26% Similarity=0.363 Sum_probs=62.5
Q ss_pred EEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccc-cCCCccEEEecccccccc
Q 004133 73 LVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVF-MDETFDVILDKGGLDALM 149 (772)
Q Consensus 73 LDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~-~~~sfDvVi~~~~l~~l~ 149 (772)
||+|||+|.++..+.+. ...+++++|+|+.|++.++++..... ........+..+.... ..++||+|++..+++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 44579999999999988877775543 2344444444443201 235999999999999993
Q ss_pred cCccchHHHHHHHHHHHhccccCeEE
Q 004133 150 EPELGHKLGNQYLSEVKRLLKSGGKF 175 (772)
Q Consensus 150 ~~~~~~~~~~~~l~ei~rvLkpGG~~ 175 (772)
+ ...+++.++++|||||+|
T Consensus 81 ~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------HHHHHHHHTTT-TSS-EE
T ss_pred h-------HHHHHHHHHHHcCCCCCC
Confidence 3 689999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-11 Score=109.98 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=87.0
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQV 130 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~ 130 (772)
+...+...+.. .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.... ..++++...|+.+...
T Consensus 7 ~~~~~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 7 VRALTLSKLRL---RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 33444455443 45679999999999999999987 3357999999999999998766433 2468899998875321
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
...++||+|+..+.... ..+++++++++|||||++++..+
T Consensus 84 ~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGGL----------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hhcCCCCEEEECCcchh----------HHHHHHHHHHHcCCCCEEEEEec
Confidence 34468999998654321 46899999999999999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-09 Score=123.12 Aligned_cols=131 Identities=16% Similarity=0.089 Sum_probs=93.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..+-+|.||+|.|.....++...|+..+.+||+....+.-|-+...-..-.+++++.+|+..+.....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~------------ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP------------ 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC------------
Confidence 34568999999999988999999999999999999877666554311122578898888765544443
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
+..+|-|.+- =+||..--.-.-..+++++||+.+++.|+|||.+- +.+.+..+.+.+
T Consensus 415 -------------------~~sv~~i~i~--FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~--~~TD~~~y~~~~ 471 (506)
T PRK01544 415 -------------------NNSLDGIYIL--FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV--FASDIENYFYEA 471 (506)
T ss_pred -------------------cccccEEEEE--CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHH
Confidence 3568999883 34442111112345999999999999999999887 445677776665
Q ss_pred HHHHHH
Q 004133 702 ISRMKM 707 (772)
Q Consensus 702 ~~~l~~ 707 (772)
+..+.+
T Consensus 472 ~~~~~~ 477 (506)
T PRK01544 472 IELIQQ 477 (506)
T ss_pred HHHHHh
Confidence 666554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=120.03 Aligned_cols=107 Identities=24% Similarity=0.384 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++..+. .+++++|+++.+++.++++.. ...++++..+|+.+++ ++.++||+|++..+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALP-FEDNSFDAVTIAFG 115 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCC-CCCCcEEEEEEeee
Confidence 4678999999999999999988754 379999999999999987764 4457899999999988 77889999999988
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++..+ ...+++++.++|+|||++++.++..
T Consensus 116 ~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 116 LRNVTD-------IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eCCccc-------HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 887755 5689999999999999999887643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-11 Score=124.28 Aligned_cols=132 Identities=16% Similarity=0.131 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeec-cCcc-cccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM-TSMQ-VFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~-~~l~-~~~~~sfDvVi~~~ 143 (772)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.++++..... .+++|+++|+ ..++ .+++++||+|+...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5789999999999999999876 34579999999999999988765433 5799999999 6554 25678999999865
Q ss_pred cccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEE
Q 004133 144 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200 (772)
Q Consensus 144 ~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~ 200 (772)
...+...... .......+++++.++|||||++++.+.....+. .++..+ ..+|...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE-YMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH-HHHHHHHhCccccc
Confidence 4433221100 000146799999999999999999876544443 333333 2356444
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-11 Score=123.01 Aligned_cols=107 Identities=21% Similarity=0.400 Sum_probs=90.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
.++++||.||.+.|..+.++...+| +.+|++||+||...++|+++| |+ +++++++.+||.+++.+....
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~----- 116 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELAND----- 116 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHT-----
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhc-----
Confidence 4678999999999999999999887 579999999999999999998 55 579999999999999987520
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.....||+||+|++..++ .++|+.+.++|++||++++.
T Consensus 117 ----------------------~~~~~fD~VFiDa~K~~y-------------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 117 ----------------------GEEGQFDFVFIDADKRNY-------------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp ----------------------TTTTSEEEEEEESTGGGH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------cCCCceeEEEEcccccch-------------hhHHHHHhhhccCCeEEEEc
Confidence 112579999999977643 78999999999999999986
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-11 Score=131.89 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++.. ...+++...|..++ +++||.|++.+++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l----~~~fD~Ivs~~~~ 238 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL----NGQFDRIVSVGMF 238 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc----CCCCCEEEEeCch
Confidence 67899999999999999999886 54 79999999999999988773 34578888887654 3689999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++.... ...+++++.++|||||++++.+++.+
T Consensus 239 ehvg~~~-----~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 239 EHVGPKN-----YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hhCChHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 9884422 57899999999999999999887644
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-10 Score=114.30 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=88.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l 128 (772)
+.....+...+.. .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++..... .+++++++|+..
T Consensus 17 ~~~r~~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~- 92 (187)
T PRK08287 17 EEVRALALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI- 92 (187)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-
Confidence 3455555566654 567899999999999999998873 3479999999999999987664332 468999988753
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
. + .++||+|++.+.... ...+++++.++|+|||++++.....
T Consensus 93 ~-~-~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 93 E-L-PGKADAIFIGGSGGN----------LTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred h-c-CcCCCEEEECCCccC----------HHHHHHHHHHhcCCCeEEEEEEecH
Confidence 3 3 368999998765432 4578899999999999998865443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=109.72 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=84.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..+||.||+|.|.++..+.+.+|..+|++||++|.+++.|++.+ .....++++++.+|+ .+....
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------------- 67 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------------- 67 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-------------
Confidence 46899999999999999999889999999999999999999998 223478999999999 432222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+||+|+++..... .+ ...=-...+|+.+++.|+|||+|+++.
T Consensus 68 -------------------~~~~D~v~~~~~~~~---~~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 -------------------LEPFDLVICSGFTLH---FL---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------------------SSCEEEEEECSGSGG---GC---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCCEEEECCCccc---cc---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 256999999551110 00 000122578999999999999999974
|
... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.5e-11 Score=122.11 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc----CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~----g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++.. ..++++.++++.+++ +++++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~-~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELV-AEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--cCCCeEEEEeccccc-ccCCCccEEEE
Confidence 35689999999999999888752 43 379999999999999977652 346888888888888 67889999999
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+.+++|+.+++ ...+++++.|+++ |.+++.++..+
T Consensus 136 ~~~lhh~~d~~-----~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHLDDAE-----VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecCChHH-----HHHHHHHHHHhcC--eeEEEeccccC
Confidence 99999996643 5689999999998 66666666654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-11 Score=122.78 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=86.8
Q ss_pred eEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 71 QILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++.... ..++++...|+.+.+ ++ ++||+|++..++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CC-CCCCEeehHHHHHh
Confidence 79999999999999998863 347999999999999998876443 246899999997776 54 58999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+.+ ...+|++++++|||||++++.++.
T Consensus 80 ~~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 IKD-------KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCC-------HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 855 578999999999999999988753
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=8e-11 Score=116.83 Aligned_cols=123 Identities=21% Similarity=0.288 Sum_probs=93.5
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhccCCCC-cEEEEeeccCcccc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQVF 131 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~-~V~gvDiS~~~I~~a~~~~~~~~~~-v~f~~~D~~~l~~~ 131 (772)
...+.+++.. .+..+|||+|||+|.++..++..+.. +|+++|+++.+++.++++....... +++...|+.+..
T Consensus 20 t~lL~~~l~~---~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-- 94 (170)
T PF05175_consen 20 TRLLLDNLPK---HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-- 94 (170)
T ss_dssp HHHHHHHHHH---HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--
T ss_pred HHHHHHHHhh---ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--
Confidence 3455666654 35789999999999999999998543 6999999999999998877665544 899999998754
Q ss_pred cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++++||+|+++..++.-.. ++.....+++++..++|||||.++++.....
T Consensus 95 ~~~~fD~Iv~NPP~~~~~~--~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 95 PDGKFDLIVSNPPFHAGGD--DGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp CTTCEEEEEE---SBTTSH--CHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cccceeEEEEccchhcccc--cchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 5789999999887654322 1233478999999999999999976654433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=117.83 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|.|+|||+|..+..|+++ +-..|+|+|-|+.||+.|+++. ++++|..+|+.+.. +...+|+++++.+|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~--p~~~~dllfaNAvl 102 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWK--PEQPTDLLFANAVL 102 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcC--CCCccchhhhhhhh
Confidence 56789999999999999999998 5567999999999999996655 78999999999997 78899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++.+ ...+|..+...|.|||.+.+-.
T Consensus 103 qWlpd-------H~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 103 QWLPD-------HPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhccc-------cHHHHHHHHHhhCCCceEEEEC
Confidence 99987 4689999999999999998753
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=119.11 Aligned_cols=127 Identities=17% Similarity=0.318 Sum_probs=103.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEE-ccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHI-TDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i-~Dg~~~l~~~~~~~~~~ 615 (772)
..+++||.||.+.|..+.++....| +.++++||+||+..+.|+++| |+ ++++.++. +|+++.+....
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~~l~~~~------ 129 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALDVLSRLL------ 129 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHHHHHhcc------
Confidence 4679999999999999999999998 779999999999999999998 54 67799999 69999998732
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE-EecCCC
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLVSRS 694 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl~~~~ 694 (772)
...||+||+|++.+++ +.||+.+.++|+|||++|+ |+.-+.
T Consensus 130 -------------------------~~~fDliFIDadK~~y-------------p~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 130 -------------------------DGSFDLVFIDADKADY-------------PEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred -------------------------CCCccEEEEeCChhhC-------------HHHHHHHHHHhCCCcEEEEeecccCC
Confidence 3679999999998865 8999999999999999997 443321
Q ss_pred ----h--hHHHHHHHHHHHhccceE
Q 004133 695 ----Q--ATKDMVISRMKMVFNHLF 713 (772)
Q Consensus 695 ----~--~~~~~v~~~l~~vF~~v~ 713 (772)
+ .-....+..+++.+..+.
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~~ 196 (219)
T COG4122 172 RVADPSIRDARTQVRGVRDFNDYLL 196 (219)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHh
Confidence 2 233455666666665433
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=120.46 Aligned_cols=129 Identities=15% Similarity=0.217 Sum_probs=96.1
Q ss_pred cccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHH-HHH-c-CCCeEEEEeCCHHHHHHHHHHhcc-C--CCC
Q 004133 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEH-LYD-A-GFHGITNVDFSKVVISDMLRRNVR-D--RSD 117 (772)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~-La~-~-g~~~V~gvDiS~~~I~~a~~~~~~-~--~~~ 117 (772)
|-+|..|..+...-...+......++.+|||+|||.|.++.. ++. . ....++|+|+++.+++.|++.+.. . ..+
T Consensus 99 Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~r 178 (296)
T PLN03075 99 FPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKR 178 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCC
Confidence 556777777666554444332123678999999998866533 332 2 234699999999999999887743 2 347
Q ss_pred cEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 118 MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 118 v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++|.++|+.+.. -..+.||+|++. ++.++...+ ..++++.++++|+|||++++-+
T Consensus 179 V~F~~~Da~~~~-~~l~~FDlVF~~-ALi~~dk~~-----k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 179 MFFHTADVMDVT-ESLKEYDVVFLA-ALVGMDKEE-----KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cEEEECchhhcc-cccCCcCEEEEe-ccccccccc-----HHHHHHHHHHhcCCCcEEEEec
Confidence 999999999865 345789999998 777664333 6899999999999999999987
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=116.50 Aligned_cols=111 Identities=20% Similarity=0.138 Sum_probs=85.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~ 127 (772)
.+...+.+.+.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++....+. ++++..+|+.+
T Consensus 59 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 344445555543 57889999999999999888875 2 34799999999999999887754432 48999999987
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.. ....+||+|++..++.++ .+++.++|+|||++++..
T Consensus 136 ~~-~~~~~fD~Ii~~~~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 136 GL-EKHAPFDAIIVTAAASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CC-ccCCCccEEEEccCcchh-------------hHHHHHhcCcCcEEEEEE
Confidence 55 456799999998876544 246789999999997754
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=119.57 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCCCccc--cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFE--WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~e--W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~ 105 (772)
.+.|++.|.... -..+. +...+......+..++......++.+|||+|||+|.++..+++.+. .|+++|+|+.|++
T Consensus 22 ~~~w~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~ 99 (230)
T PRK07580 22 FDRWARIYSDAP-VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVE 99 (230)
T ss_pred cchHHHhhCcCc-hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 357887776531 11110 1112223333444554321124678999999999999999998876 5999999999999
Q ss_pred HHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeE
Q 004133 106 DMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 174 (772)
Q Consensus 106 ~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~ 174 (772)
.++++..... .++.|.++|+ + ..+++||+|++..+++++..+. ...+++.+.+.+++++.
T Consensus 100 ~a~~~~~~~~~~~~i~~~~~d~---~-~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 100 EARERAPEAGLAGNITFEVGDL---E-SLLGRFDTVVCLDVLIHYPQED-----AARMLAHLASLTRGSLI 161 (230)
T ss_pred HHHHHHHhcCCccCcEEEEcCc---h-hccCCcCEEEEcchhhcCCHHH-----HHHHHHHHHhhcCCeEE
Confidence 9988775443 3689999984 3 3467899999999998765433 67888999887754443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=121.75 Aligned_cols=125 Identities=21% Similarity=0.324 Sum_probs=96.3
Q ss_pred ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHH--HHhccCCCCcEEEE
Q 004133 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML--RRNVRDRSDMRWRV 122 (772)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~--~~~~~~~~~v~f~~ 122 (772)
||..++. -..+..++.. -.+.+|||||||+|..+..++..|.+.|+|+|.+.-...+.+ +++......+.+.-
T Consensus 97 EWrSd~K--W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp 171 (315)
T PF08003_consen 97 EWRSDWK--WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP 171 (315)
T ss_pred cccccch--HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC
Confidence 4655432 2335566643 468899999999999999999999989999999998877643 33332223344444
Q ss_pred eeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 123 MDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 123 ~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.-+.+++ . .+.||+|++.|+|.|..+| ..+|.+++..|++||.+++-|+.-+
T Consensus 172 lgvE~Lp-~-~~~FDtVF~MGVLYHrr~P-------l~~L~~Lk~~L~~gGeLvLETlvi~ 223 (315)
T PF08003_consen 172 LGVEDLP-N-LGAFDTVFSMGVLYHRRSP-------LDHLKQLKDSLRPGGELVLETLVID 223 (315)
T ss_pred cchhhcc-c-cCCcCEEEEeeehhccCCH-------HHHHHHHHHhhCCCCEEEEEEeeec
Confidence 6778888 4 7899999999999999886 4799999999999999999887543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=118.74 Aligned_cols=112 Identities=19% Similarity=0.197 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.++++....+.+++++++|+.+. +++++||+|+++..+.
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCCC
Confidence 46789999999999999999888766899999999999999877655455688999998764 4678999999875432
Q ss_pred cccc--------------CccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 147 ALME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~l~~--------------~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.... ..+.......+++++.++||+||+++++.-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1111 011122357789999999999999998643
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-10 Score=112.97 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=88.5
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
+++......+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .++.++++|+.+
T Consensus 27 ~~r~~~l~~l~~---~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 27 EIRALALSKLRL---RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHcCC---CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 444444445544 67899999999999999988764 3 3579999999999999987765543 478999999987
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
......+.||.|++.+... . ...+++.+.++|||||++++.....
T Consensus 104 ~l~~~~~~~D~V~~~~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 104 ILFTINEKFDRIFIGGGSE-----K-----LKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred hHhhcCCCCCEEEECCCcc-----c-----HHHHHHHHHHHcCCCcEEEEEeecH
Confidence 4212346899999854221 1 5689999999999999998754443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=118.00 Aligned_cols=137 Identities=19% Similarity=0.280 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCccccccc-----hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAE-----WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~-----~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~ 102 (772)
-..|+..|... ....|... ...+...+..++.. ...++.+|||+|||+|.++..++..+. .|+|+|+|+.
T Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~ 88 (219)
T TIGR02021 14 FQRWARIYGSG---DPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQ 88 (219)
T ss_pred HHHHHHhhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHH
Confidence 46787777643 11222111 12333344555542 013578999999999999999998865 7999999999
Q ss_pred HHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 103 VISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 103 ~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
|++.++++..... .++.|.++|+.+++ ++||+|++..++.++.... ...+++++.+++++++++.+.
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~~~~l~~~~~~~-----~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVCMDVLIHYPASD-----MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEEhhHHHhCCHHH-----HHHHHHHHHHHhCCCEEEEEC
Confidence 9999988875443 37899999988764 7899999999988774422 678999999999877665543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=122.97 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=83.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC------CCCcEEEEeec
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMDM 125 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~------~~~v~f~~~D~ 125 (772)
.....+..++......++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++.... ..++.|.+.|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3444455555431112568999999999999999999886 6999999999999998886432 23578888887
Q ss_pred cCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 126 ~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
.++ +++||+|++..++.|+.++. ...+++.+.+ +.+||.++
T Consensus 207 ~~l----~~~fD~Vv~~~vL~H~p~~~-----~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESL----SGKYDTVTCLDVLIHYPQDK-----ADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhc----CCCcCEEEEcCEEEecCHHH-----HHHHHHHHHh-hcCCEEEE
Confidence 654 47899999999998875532 4567777775 45565544
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=124.71 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=92.2
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccCc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~l 128 (772)
..++.+++.. ....+|||+|||+|.++..+++.+ ..+|+++|+|+.|++.++++..... .++++...|+.+.
T Consensus 217 trllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 4456666654 345699999999999999998873 3579999999999999987764333 2578888888653
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++.++||+|+++..++..... ......++|+.+.++|+|||.++++..
T Consensus 294 --~~~~~fDlIlsNPPfh~~~~~--~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 --VEPFRFNAVLCNPPFHQQHAL--TDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred --CCCCCEEEEEECcCcccCccC--CHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 345689999999887754321 122367899999999999999999863
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.1e-10 Score=115.97 Aligned_cols=123 Identities=16% Similarity=0.243 Sum_probs=86.8
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEee
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D 124 (772)
|......+...+..-++.....++.+|||+|||+|.++..+++. +...|+++|+++.|++.+.+++.. ..++.++.+|
T Consensus 50 ~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~D 128 (226)
T PRK04266 50 WNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILAD 128 (226)
T ss_pred ECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEECC
Confidence 55544455554544222222368899999999999999999886 334799999999999988766533 4689999999
Q ss_pred ccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 125 MTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 125 ~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+.+... ...++||+|+.... .+ .....+++++.++|||||++++.
T Consensus 129 ~~~~~~~~~l~~~~D~i~~d~~-----~p----~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 129 ARKPERYAHVVEKVDVIYQDVA-----QP----NQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCCcchhhhccccCCEEEECCC-----Ch----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 976210 11356999985321 11 11356789999999999999993
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-10 Score=122.49 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccC-cccccCCC----ccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTS-MQVFMDET----FDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~-l~~~~~~s----fDv 138 (772)
++.+|||+|||+|..+..|++.. ..+|+++|+|+.|++.+++++....+ ++.++++|+.+ ++ ++... ..+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEE
Confidence 56799999999999999998873 24699999999999999888755444 46778999987 34 33322 234
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++...++.++..++ ..++|++++++|+|||+|++..
T Consensus 142 ~~~gs~~~~~~~~e-----~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEE-----AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHH-----HHHHHHHHHHhcCCCCEEEEec
Confidence 44445666665433 6899999999999999998754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.2e-10 Score=121.61 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=95.2
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV 130 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~ 130 (772)
.+...+..+... .++.+|||+|||+|.++..++..|. .++|+|+++.|++.++.++...+ .++.+.++|+.+++
T Consensus 169 ~la~~~~~l~~~---~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~- 243 (329)
T TIGR01177 169 KLARAMVNLARV---TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP- 243 (329)
T ss_pred HHHHHHHHHhCC---CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-
Confidence 344444444443 5788999999999999988877775 69999999999999987764332 34789999999998
Q ss_pred ccCCCccEEEeccccccccc--CccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 131 FMDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~--~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+.+++||+|+++..+..-.. ..........+++++.++|||||++++.......
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 77889999998654322111 1111233689999999999999999988765443
|
This family is found exclusively in the Archaea. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=112.55 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
.++.+|||+|||+|.++..+++. + ...|++||+++ +. ..++++++++|+++.+ .+.+++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 46789999999999999999887 2 24799999998 21 2357999999999853 15678999
Q ss_pred EEEecccccccccCccc----hHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 138 VILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
+|++..+.++...+..+ ......+|+++.++|||||.|++..+....+
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCH
Confidence 99997766654322100 0113679999999999999999988775543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-10 Score=105.97 Aligned_cols=112 Identities=24% Similarity=0.334 Sum_probs=87.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
+.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.+..... .++++.++|+.+.. .+++++||+|+.+..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 36899999999999999999885589999999999999988775543 46999999998864 3678999999998777
Q ss_pred cccccC-ccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~-~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
...... .........+++++.++|||||.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 543221 11122467899999999999999998763
|
... |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-10 Score=115.67 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+.+.+. +++++|+++.+++.++++.......+.+...|+.+.+...++.||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999988875 699999999999999877654445678888888876423457999999999998
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+..+ ...+++.+.++|+|||++++..+.
T Consensus 126 ~~~~-------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPD-------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCC-------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 8865 467899999999999999987654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=108.38 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=88.0
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccC-
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS- 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~- 127 (772)
......+..++.. .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++..... .+++++.+|+.+
T Consensus 26 ~~v~~~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 3555556666654 57789999999999999988865 23579999999999999987764432 468999999865
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
++ .....+|.++..+. . . ...+++++.++|+|||++++.......+
T Consensus 103 ~~-~~~~~~d~v~~~~~-----~-~-----~~~~l~~~~~~LkpgG~li~~~~~~~~~ 148 (196)
T PRK07402 103 LA-QLAPAPDRVCIEGG-----R-P-----IKEILQAVWQYLKPGGRLVATASSLEGL 148 (196)
T ss_pred Hh-hCCCCCCEEEEECC-----c-C-----HHHHHHHHHHhcCCCeEEEEEeecHHHH
Confidence 22 22234676554221 1 1 5689999999999999999988765443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-10 Score=113.92 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=87.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccC
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~ 127 (772)
+.+...+...+.. .++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.++++....+ .+++++++|+..
T Consensus 62 p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 4555556666654 67899999999999999988876 32 479999999999999988875443 479999999987
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.. .+.+.||+|+....... +.+.+.+.|||||++++..
T Consensus 139 ~~-~~~~~fD~I~~~~~~~~-------------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GY-EENAPYDRIYVTAAGPD-------------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CC-CcCCCcCEEEECCCccc-------------chHHHHHhhCCCcEEEEEE
Confidence 65 56789999998765432 2346677899999988853
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.5e-10 Score=120.80 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=104.3
Q ss_pred CCCCHHHHHHHHHhcC-----CCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEE
Q 004133 24 DFTSKENWDKFFTIRG-----IGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNV 97 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~-----~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gv 97 (772)
.|...+||..+ .... .+..|.|-. .+.-...+...+.. ....+|||+|||+|.++..+++.+ ..+|+++
T Consensus 152 ~~~~~~~~~~y-~~~~l~i~~~pgvFs~~~-lD~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~v 226 (342)
T PRK09489 152 VFDADKFWKEY-QVDGLTVKTLPGVFSRDG-LDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLS 226 (342)
T ss_pred CCcccccceee-ecCCEEEEeCCCCCCCCC-CCHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEE
Confidence 36666777643 2211 122344422 22333455565543 345699999999999999999873 3479999
Q ss_pred eCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEE
Q 004133 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 98 DiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
|+|+.|++.++++........++...|+.+. ..+.||+|+++..+|..... .......+++++.++|||||.+++
T Consensus 227 Dis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~g~~~--~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 227 DVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHDGIQT--SLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred ECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccCCccc--cHHHHHHHHHHHHHhcCcCCEEEE
Confidence 9999999999887766555667888887652 35789999999888764321 123368999999999999999988
Q ss_pred EEcC
Q 004133 178 LTLA 181 (772)
Q Consensus 178 ~~~~ 181 (772)
+...
T Consensus 302 Van~ 305 (342)
T PRK09489 302 VANA 305 (342)
T ss_pred EEeC
Confidence 7644
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.1e-10 Score=113.85 Aligned_cols=111 Identities=16% Similarity=0.064 Sum_probs=85.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l 128 (772)
.....+.+++.. .++.+|||+|||+|.++..|++... .+|+++|+++.+++.+++++...+ .+++++++|+.+.
T Consensus 64 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 64 HMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence 344455556654 6789999999999999999988732 359999999999999988875543 4799999999875
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. ...++||+|+....... +.+.+.+.|+|||++++..
T Consensus 141 ~-~~~~~fD~Ii~~~~~~~-------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 W-EPLAPYDRIYVTAAGPK-------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred C-cccCCCCEEEEcCCccc-------------ccHHHHHhcCcCcEEEEEE
Confidence 4 34578999997654432 3456788999999998764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.6e-10 Score=118.73 Aligned_cols=105 Identities=16% Similarity=0.287 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++...... .+.+...|.. . ..+++||+|+++..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~-~~~~~fDlVvan~~ 234 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--Q-PIEGKADVIVANIL 234 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--c-ccCCCceEEEEecC
Confidence 36789999999999999999888877899999999999999887754432 3455555532 3 34679999998754
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.+. +..++.++.++|||||++++..+....
T Consensus 235 ~~~----------l~~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 235 AEV----------IKELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred HHH----------HHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 332 467899999999999999998776443
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=111.54 Aligned_cols=138 Identities=18% Similarity=0.107 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHH
Q 004133 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (772)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I 104 (772)
|-...||+..|.....+-...-+...+.+...+..++.. .++.+|||+|||+|.++..++..+ .+++++|+++.++
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~ 113 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ 113 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH
Confidence 333456666665442110000011233455556666654 578999999999999998887774 3799999999999
Q ss_pred HHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 105 SDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 105 ~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+.+++++...+ .++++.++|+.+.. ...++||+|++...+.+ +.+.+.+.|+|||++++...
T Consensus 114 ~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~~-------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 114 WEAKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAAAPE-------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccCchh-------------hhHHHHHhcCCCcEEEEEEc
Confidence 99988775433 36899999987643 24578999998765443 33567899999999988764
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-10 Score=112.76 Aligned_cols=102 Identities=23% Similarity=0.351 Sum_probs=82.6
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC-cccccCC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQVFMDE 134 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~-l~~~~~~ 134 (772)
.+..++ .|+.+|||+|||.|.+..+|.+..-...+|+|+++..+..+.++ .+..+++|+.+ +..|+++
T Consensus 6 ~I~~~I-----~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 6 IIAEWI-----EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHc-----CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCC
Confidence 466677 47899999999999999999886334699999999998877544 47899999976 4458999
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+||.||.+.+|.++..+ ..+|+|+.|+ |...++.
T Consensus 75 sFD~VIlsqtLQ~~~~P-------~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRP-------DEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred CccEEehHhHHHhHhHH-------HHHHHHHHHh---cCeEEEE
Confidence 99999999999999875 4788888777 4444443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-10 Score=113.87 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc--cccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--VFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~--~~~~~sfDvVi~~~ 143 (772)
...+|||+|||+|.++..++.. +..+|+|+|+++.+++.|+++..... .+++++++|+.++. .++++++|.|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999987 34579999999999999987764432 47999999998753 13567899998765
Q ss_pred cccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 144 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 144 ~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
...+...... ..-....++++++++|||||.+++.+-....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~ 137 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL 137 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 4333211000 0000257999999999999999998866543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-09 Score=109.83 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=118.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||.|.|+++.+|....+.++|++||+++.+.+.|++...+. -.+|++|+.+|--+|.+...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~---------- 112 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV---------- 112 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----------
Confidence 4578999999999999999999988899999999999999999998664 36899999999999977754
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCC-cCCcC---------CCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAAD---------FVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s-~Pp~~---------f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||+||+ +.+-...+-. |+.+. ..-+++++.++.+|+|+|.+.+
T Consensus 113 ---------------------~~~fD~Ii~--NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~- 168 (248)
T COG4123 113 ---------------------FASFDLIIC--NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF- 168 (248)
T ss_pred ---------------------ccccCEEEe--CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-
Confidence 247999998 3333222322 44443 4468899999999999999985
Q ss_pred ecCCChhHHHHHHHHHHH-hccc---eEEEe-ecCCceEEEEEecCCCc
Q 004133 690 LVSRSQATKDMVISRMKM-VFNH---LFCLQ-LEEDVNLVLFGLSSESC 733 (772)
Q Consensus 690 l~~~~~~~~~~v~~~l~~-vF~~---v~~~~-~~~~~N~vl~a~~~~~~ 733 (772)
+.|...+ ..++..+++ -|.- ++.++ .+...|.||+...-...
T Consensus 169 -V~r~erl-~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 169 -VHRPERL-AEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred -EecHHHH-HHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 3354443 457888877 4441 22332 24568899988766543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-10 Score=118.30 Aligned_cols=132 Identities=19% Similarity=0.212 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--C-----CcEEEEeeccCcc-----cccCC
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--S-----DMRWRVMDMTSMQ-----VFMDE 134 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~-----~v~f~~~D~~~l~-----~~~~~ 134 (772)
++.+.+|++|||-|......-..|...++|+||++..|++|++++..-. . .+.|+++|.+.-. .+.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3688999999999999988888888889999999999999999874321 1 3689999987622 14566
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEE
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 201 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 201 (772)
+||+|-+..++|+....+ ..+..+|.++.+.|+|||+||...-...-+...+-..-...|.-.+
T Consensus 196 ~fDivScQF~~HYaFete---e~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdi 259 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETE---ESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDI 259 (389)
T ss_pred CcceeeeeeeEeeeeccH---HHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhccee
Confidence 699999999999876643 3478999999999999999998776555555444433222444444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=116.13 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=90.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+++||.||.|.|..+.++....| ..+|+++|+||+..++|+++| |+ .++++++.||+.++|.+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~------ 188 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQ------ 188 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh------
Confidence 4578999999999999999988765 568999999999999999998 66 46899999999999987531
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+||+|++...+ .++++.+.++|++||+++++
T Consensus 189 ---------------------~~~~~~FD~VFIDa~K~~Y-------------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 189 ---------------------NGEGSSYDFAFVDADKRMY-------------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ---------------------cccCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCcEEEEe
Confidence 0112579999999986543 88999999999999999975
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=113.24 Aligned_cols=105 Identities=24% Similarity=0.344 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCccccc-CCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFM-DETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l 145 (772)
.+.+|||+|||+|.++..+++.+. .++++|+++.+++.++++...... ++++.+.|+.+.+ .. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA-EKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-cCCCCCccEEEehhHH
Confidence 478999999999999999988776 599999999999999887755444 6899999998876 33 3789999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++..+ ...+++++.++|+|||.+++.+..
T Consensus 123 ~~~~~-------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHVPD-------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhCCC-------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 88865 468999999999999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.05 E-value=9e-10 Score=120.11 Aligned_cols=121 Identities=23% Similarity=0.271 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc-------CC----CCcEEEEeeccCcc---cccC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------DR----SDMRWRVMDMTSMQ---VFMD 133 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~-------~~----~~v~f~~~D~~~l~---~~~~ 133 (772)
++.+|||+|||-|.........+...++|+|+|+..|++|++|+.. .. -...|+++|..... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6899999999999998888888888999999999999999999821 11 14567888887532 1333
Q ss_pred --CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccc
Q 004133 134 --ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 191 (772)
Q Consensus 134 --~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~ 191 (772)
..||+|-+...+|+....+ ..++.+|+.+.+.|+|||+||..+.....+...+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese---~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESE---EKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSH---HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred cCCCcceeehHHHHHHhcCCH---HHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 4999999999999988754 447889999999999999999999887666444433
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=115.50 Aligned_cols=111 Identities=19% Similarity=0.127 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|+++....+ .+++|+++|+.+. +++++||+|+++..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCC
Confidence 45799999999999999999863 3479999999999999988875443 3689999998653 35568999998632
Q ss_pred c------cccc------------cCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 145 L------DALM------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 145 l------~~l~------------~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
. ..+. ..+++...+..+++++.++|+|||++++..-
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 1111 1112234468899999999999999987653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=113.73 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+.+|||+|||+|.++..++.. +..+++|+|+|+.+++.++++...... ++++.++|+.+ . +++++||+|+++..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-P-LPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-c-CcCCceeEEEECCCC
Confidence 3569999999999999999886 334799999999999999877654333 58999999987 4 567899999986543
Q ss_pred cccc------cC-------------ccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALM------EP-------------ELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~------~~-------------~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.... .. .++......+++++.++|+|||++++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3211 00 0011124578999999999999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=117.50 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++....+ .+++++.+|+.+.+ ++ .+|+|+..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-CC--CCCEEEeEh
Confidence 567899999999999999998873 347999998 789998887765433 36899999998766 54 379999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++...++. ..+++++++++|+|||++++.++.
T Consensus 224 ~lh~~~~~~-----~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 224 ILYSANEQL-----STIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhhcCChHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 888765432 578999999999999999999753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=105.72 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCC---cEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD---MRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~---v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++....... +.+.+.|+.+. +.+.+||+|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECC
Confidence 467799999999999999999886 47999999999999998776443322 88999998774 4556899999876
Q ss_pred cccccc--------------cCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 144 GLDALM--------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 144 ~l~~l~--------------~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+.... ....+......+++++.++|||||.+++...
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 543211 0011122357789999999999999887653
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-09 Score=117.31 Aligned_cols=124 Identities=10% Similarity=0.060 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc-CCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM-DETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++.. +..+|+++|+|+.|++.++++....+.+++++++|+.+.. ++ .++||+|+++-..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~-l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD-MPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc-cccCCCccEEEECCCC
Confidence 4569999999999999998875 4457999999999999998887655568999999997654 32 4689999986642
Q ss_pred c------------------ccccCccchHHHHHHHHHHHhccccCeEEEEE-EcCchhhhhccccc
Q 004133 146 D------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL-TLAESHVLGLLFPK 192 (772)
Q Consensus 146 ~------------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~-~~~~~~~~~~l~~~ 192 (772)
- ++...+++...+.++++.+.++|+|||.+++. .+.|......++..
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 1 11112233344778999999999999998763 45555544455444
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=113.81 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=105.2
Q ss_pred CCCeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC--CCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg--~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+|+.||.|.| +...+++.++|+.+++++|+||++++.|++++. ..-.++++++.+|+.+....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---------- 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---------- 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc----------
Confidence 6789999999966 444455578899999999999999999999993 22368999999999884211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
..+||+|++++-- +|.-+ --..+|+.+.+.|+|||+|++-.......+
T Consensus 193 -----------------------l~~FDlVF~~ALi-----~~dk~----~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~ 240 (296)
T PLN03075 193 -----------------------LKEYDVVFLAALV-----GMDKE----EKVKVIEHLGKHMAPGALLMLRSAHGARAF 240 (296)
T ss_pred -----------------------cCCcCEEEEeccc-----ccccc----cHHHHHHHHHHhcCCCcEEEEecccchHhh
Confidence 2569999998521 11000 118899999999999999998764333333
Q ss_pred HHHHH-HHHHHhccceEEEeecCC-ceEEEEEecCCC
Q 004133 698 KDMVI-SRMKMVFNHLFCLQLEED-VNLVLFGLSSES 732 (772)
Q Consensus 698 ~~~v~-~~l~~vF~~v~~~~~~~~-~N~vl~a~~~~~ 732 (772)
...++ ...-+-|..+..++..++ +|.|+|+.+...
T Consensus 241 LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 241 LYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred cCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeecC
Confidence 22211 222236776666665444 699999988653
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=115.55 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~-~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++.. ....++.+.++|+.+. +.+++||+|+++..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~--~~~~~fD~Iv~npP 184 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP--LPGGRFDLIVSNPP 184 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc--CCCCceeEEEECCC
Confidence 467899999999999999998873 4579999999999999988765 2345799999998664 34678999998543
Q ss_pred ccc-------------------cccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 145 LDA-------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 145 l~~-------------------l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
... +....++.....++++++.++|+|||++++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 211 11111223346889999999999999998754
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=113.90 Aligned_cols=124 Identities=17% Similarity=0.261 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~--v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.+++..++.|...++|+|+.+.+++.++.+...++-. +.....+....+ ..++||+|+++=.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--~~~~~DvIVANIL 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--ENGPFDVIVANIL 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--ccCcccEEEehhh
Confidence 368999999999999999999999988999999999999998887655433 333334443333 3469999998663
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 203 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~ 203 (772)
-+- +..+...+.+.|||||+++++-.-..+ .+.....+ ..+|.+..+.
T Consensus 239 A~v----------l~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 AEV----------LVELAPDIKRLLKPGGRLILSGILEDQ-AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHH----------HHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHHHHHhCCCeEeEEE
Confidence 222 578999999999999999998876555 33333333 3466555444
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=114.83 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=82.8
Q ss_pred CeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc-
Q 004133 70 PQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL- 145 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l- 145 (772)
.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++....+ .+++++++|+.+. +++++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 68999999999999999887 33579999999999999988875443 3599999998763 345689999986321
Q ss_pred -----c------------ccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 -----D------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 -----~------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. ++...+++...+..+++++.++|+|||++++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 011112233457889999999999999999854
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-09 Score=112.84 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=92.4
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|......+...|..-++.....++.+|||+|||+|.++..+++. | ...|+++|+|+.|++.+.+.+. ..+++.++..
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~ 188 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIE 188 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEEC
Confidence 76666677777766555444578899999999999999999987 3 3469999999998877766653 3478999999
Q ss_pred eccCcc--cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 124 DMTSMQ--VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 124 D~~~l~--~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
|+.... .+..++||+|++... ..+ ....++.++.++|||||+|++.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva---~pd------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA---QPD------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC---Ccc------hHHHHHHHHHHhccCCCEEEEE
Confidence 987521 023468999987653 111 1456777899999999999984
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=112.36 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.++++....... +...+. ..+.+||+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~------~~~~~~-~~~~~fD~Vvani~~~ 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE------LNVYLP-QGDLKADVIVANILAN 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC------ceEEEc-cCCCCcCEEEEcCcHH
Confidence 367899999999999999888888767999999999999998877543321 111112 1223799999864322
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
. +..+++++.++|||||++++..+...
T Consensus 191 ~----------~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 191 P----------LLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred H----------HHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 1 56789999999999999999876643
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=111.98 Aligned_cols=106 Identities=15% Similarity=0.286 Sum_probs=87.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+++||.||.|.|+.+.++....+ ..+|+++|+||..+++|+++| |+ +++++++.+|+.+++.+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~~l~~------ 138 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALDQLLN------ 138 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHHh------
Confidence 4578999999999988777777654 679999999999999999998 55 47899999999999987641
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
......||+|++|++...+ ..+++.+.+.|+|||++++
T Consensus 139 ---------------------~~~~~~fD~VfiDa~k~~y-------------~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 139 ---------------------NDPKPEFDFAFVDADKPNY-------------VHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred ---------------------CCCCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCeEEEE
Confidence 0013579999999875432 5789999999999999986
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=112.26 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=89.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+++||.||.+.|..+.++....| ..+|+++|+||...++|+++| |+ .+++++++||+.++|.+....
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~----- 150 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIED----- 150 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhc-----
Confidence 4678999999999988888887764 679999999999999999999 55 579999999999999886410
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+||+|++...+ ..+|+.+.++|++||++++.
T Consensus 151 ---------------------~~~~~~fD~iFiDadK~~Y-------------~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 151 ---------------------GKYHGTFDFIFVDADKDNY-------------INYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ---------------------cccCCcccEEEecCCHHHh-------------HHHHHHHHHhcCCCeEEEEc
Confidence 0012579999999986532 78899999999999999864
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=115.44 Aligned_cols=123 Identities=16% Similarity=0.287 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++...++.|.++|+++|+++.+++.+++++..++..-.+.+....+ ...+.||+|+++-..+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKFDLVVANILAD 236 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-EEEEEEES-HH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccCCEEEECCCHH
Confidence 4678999999999999999999999899999999999999998876665444444432222 3458999999876555
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEE
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 203 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~ 203 (772)
- +..++..+.++|+|||+++++-+..... ..+...+..+|.+....
T Consensus 237 v----------L~~l~~~~~~~l~~~G~lIlSGIl~~~~-~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 237 V----------LLELAPDIASLLKPGGYLILSGILEEQE-DEVIEAYKQGFELVEER 282 (295)
T ss_dssp H----------HHHHHHHCHHHEEEEEEEEEEEEEGGGH-HHHHHHHHTTEEEEEEE
T ss_pred H----------HHHHHHHHHHhhCCCCEEEEccccHHHH-HHHHHHHHCCCEEEEEE
Confidence 4 4578899999999999999987765432 23344443366554433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=97.57 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+||.+|+|.|.++..+.+.. ..++++||+||..+++|+..+... -+++++++++|..++.+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~------------- 67 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP------------- 67 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-------------
Confidence 479999999999999999987 679999999999999999998433 25789999999999874443
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+||+|+.|..-.... .. -....-....|++.+.+.|+|+|++++-+.
T Consensus 68 ------------------~~~~D~Iv~npP~~~~~-~~-~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 68 ------------------DGKFDLIVTNPPYGPRS-GD-KAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp ------------------TT-EEEEEE--STTSBT-T-----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------------------CceeEEEEECCCCcccc-cc-chhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 47899999966332110 00 011122567999999999999999998653
|
... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=117.27 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc-ccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-QVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l-~~~~~~sfDvVi~~~ 143 (772)
..+..+||||||+|.++..++.. +..+++|+|+++.+++.+.++....+ .++.++++|+..+ ..++++++|.|+.+.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 34679999999999999999987 34579999999999999988775543 4899999999764 127789999999765
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
...|.... ...-....++++++|+|+|||.+.+.|-..+.+
T Consensus 201 PdPW~Kkr-HRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 PVPWDKKP-HRRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCccccc-hhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 44332211 000013689999999999999999988766544
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=107.98 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC-cccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~-l~~~~~~sfDvVi~~~~l~ 146 (772)
++.+|||+|||+|.++..+++.+...++|+|+|+.+++.++++ +++++++|+.+ ++.+++++||+|++.++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 5689999999999999998876444689999999999887532 47899999976 4226678999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhcccc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKS 171 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkp 171 (772)
++.+ ...+++++.|++++
T Consensus 87 ~~~d-------~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRN-------PEEILDEMLRVGRH 104 (194)
T ss_pred cCcC-------HHHHHHHHHHhCCe
Confidence 9866 46788998887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-09 Score=105.59 Aligned_cols=122 Identities=22% Similarity=0.339 Sum_probs=94.9
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC-cccccC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQVFMD 133 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~-l~~~~~ 133 (772)
..-.+++.... ....-|||||||+|..+..|.+.|. ..+|+|||+.|++.|.++-. .-.++.+|+-. +| |..
T Consensus 38 eRaLELLalp~-~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~----egdlil~DMG~Glp-frp 110 (270)
T KOG1541|consen 38 ERALELLALPG-PKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL----EGDLILCDMGEGLP-FRP 110 (270)
T ss_pred HHHHHHhhCCC-CCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh----hcCeeeeecCCCCC-CCC
Confidence 33344444322 2367899999999999999999895 69999999999999986432 23578888865 77 999
Q ss_pred CCccEEEecccccccccCc----cchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 134 ETFDVILDKGGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~----~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++||-||+...+.++.+.. ++...+..+|..++.+|++|++.++-.|...
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 9999999999888876533 2223478899999999999999999887654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.97 E-value=4e-09 Score=92.82 Aligned_cols=102 Identities=29% Similarity=0.366 Sum_probs=82.6
Q ss_pred eEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHh-ccCCCCcEEEEeeccCcccccCCCccEEEecccccccc
Q 004133 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN-VRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALM 149 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~-~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~ 149 (772)
+|||+|||+|.++..++..+..+++++|+++.+++.+++.. ......+++...|+.+......++||+|++..+++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 58999999999999998754568999999999999887433 22345789999999987612567899999999988741
Q ss_pred cCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 150 EPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 150 ~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
. ....+++.+.+.|+|||.+++.
T Consensus 81 ~------~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 E------DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h------HHHHHHHHHHHHcCCCCEEEEE
Confidence 1 1679999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.1e-09 Score=110.99 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=88.2
Q ss_pred CeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccc-
Q 004133 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGL- 145 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l- 145 (772)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++....+. +++|+++|+.+. ++..+||+|+++...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCCC
Confidence 699999999999999999873 34799999999999999887654433 499999999763 455589999986321
Q ss_pred ------------c-----ccccCccchHHHHHHHHHHHhccccCeEEEEEE-cCchhhhhcccc
Q 004133 146 ------------D-----ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFP 191 (772)
Q Consensus 146 ------------~-----~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~-~~~~~~~~~l~~ 191 (772)
. ++...+++...+..+++++.++|+|||++++.. +.|.+....++.
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~ 257 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR 257 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence 1 111222333458899999999999999998754 444554444443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=105.95 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=71.1
Q ss_pred EEEeCCHHHHHHHHHHhccC----CCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccc
Q 004133 95 TNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 170 (772)
Q Consensus 95 ~gvDiS~~~I~~a~~~~~~~----~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLk 170 (772)
+|+|+|+.|++.|+++.... ..+++|+++|+.+++ +++++||+|++..+++++.+ ..+++++++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~~d-------~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNVVD-------RLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcCCC-------HHHHHHHHHHHcC
Confidence 58999999999997765321 246999999999999 99999999999999998865 5799999999999
Q ss_pred cCeEEEEEEcCchh
Q 004133 171 SGGKFVCLTLAESH 184 (772)
Q Consensus 171 pGG~~ii~~~~~~~ 184 (772)
|||++++.++..++
T Consensus 73 pGG~l~i~d~~~~~ 86 (160)
T PLN02232 73 PGSRVSILDFNKSN 86 (160)
T ss_pred cCeEEEEEECCCCC
Confidence 99999999988654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=102.74 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEE
Q 004133 518 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 597 (772)
Q Consensus 518 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~ 597 (772)
-+++.|+-.+.+.. .+ +.+.+||.||+|+|.++..+....|..+|++||+++.+++.|++...-..-++++++
T Consensus 28 ~~~~~~~d~l~l~~-~l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAP-YL------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHh-hc------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 45666665554432 12 236789999999999999888888889999999999999999987622212349999
Q ss_pred EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHH
Q 004133 598 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK 677 (772)
Q Consensus 598 i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~ 677 (772)
.+|+.++-. ..+||+|+++... .+ ..+++.+.
T Consensus 101 ~~d~~~~~~----------------------------------~~~fDlV~~~~~~--------~~------~~~l~~~~ 132 (187)
T PRK00107 101 HGRAEEFGQ----------------------------------EEKFDVVTSRAVA--------SL------SDLVELCL 132 (187)
T ss_pred eccHhhCCC----------------------------------CCCccEEEEcccc--------CH------HHHHHHHH
Confidence 999876411 2579999985321 01 68999999
Q ss_pred HccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecC
Q 004133 678 DALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEE 719 (772)
Q Consensus 678 ~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~ 719 (772)
+.|+|||.|++=...........+...+.-.-..+|.+.++.
T Consensus 133 ~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 133 PLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred HhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 999999999976644433333333344434445667776543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.5e-09 Score=95.67 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.||+|.|.++..+.+.+|..+|++||+++.+++.|++++....-++++++.+|+..++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 85 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-------------- 85 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--------------
Confidence 468999999999999999999888899999999999999998763222346899989876543322
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+||+|+++... .. ..++++.+.+.|+|||.|++++.
T Consensus 86 ------------------~~~~D~v~~~~~~-----------~~--~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 ------------------LPEPDRVFIGGSG-----------GL--LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ------------------cCCCCEEEECCcc-----------hh--HHHHHHHHHHHcCCCCEEEEEec
Confidence 2479999984311 11 25899999999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.3e-09 Score=106.97 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=94.5
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeeccCcc-ccc
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ-VFM 132 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~--~~~~v~f~~~D~~~l~-~~~ 132 (772)
|..+... ....+|||+|||+|.++..++++ ...+|++||+.+.+.+.|++.... ...+++++++|+.++. ...
T Consensus 36 L~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 4455544 34789999999999999999998 546799999999999999877643 2347999999999875 233
Q ss_pred CCCccEEEecccccccccC--ccch---------HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 133 DETFDVILDKGGLDALMEP--ELGH---------KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~--~~~~---------~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+||+|+++-.+...... +++. ...+.+++...++|||||++.++.-.
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 4579999999887655443 1111 12789999999999999999988643
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=107.26 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=100.3
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCc-EEEEeeccCccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQV 130 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v-~f~~~D~~~l~~ 130 (772)
=..+|.+.+.. ....+|||+|||+|-++..+++.. ..+++.+|++..+|+-++++...+...- .+...|+..--
T Consensus 146 GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 146 GSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred HHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 34556666654 456699999999999999999984 5679999999999999988886665544 56666665533
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhccccccc
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFR 194 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~ 194 (772)
.+ +||.|+++-.+|.=..- ......+++....+.|++||.+.++..+.......+-+.|.
T Consensus 222 -~~-kfd~IisNPPfh~G~~v--~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 222 -EG-KFDLIISNPPFHAGKAV--VHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred -cc-cccEEEeCCCccCCcch--hHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 33 99999999999854332 22336699999999999999999988766554444444443
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=102.08 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+ ..++++++++|+.+.+ .+++++||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 578899999999999999888762 3469999999853 1246889999988742 13567899
Q ss_pred EEEeccccccc----ccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 138 VILDKGGLDAL----MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 138 vVi~~~~l~~l----~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+|++.+..++. .+..........+++.+.++|+|||++++..+...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence 99986543210 00000011246899999999999999998765543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.9e-09 Score=101.84 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=93.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..+....|..+|++||+++..++.|++.+....-+.++++.+|..+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--------------- 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--------------- 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---------------
Confidence 56789999999999999999999998999999999999999998843322239999999865422
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
..+||+|+... +-. .|. ......-..|++.+++.|+|+|.|++-. .+.... +.
T Consensus 96 -------------------~~~fD~Iv~NP--P~~-~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~-~~~~~~-~~- 148 (170)
T PF05175_consen 96 -------------------DGKFDLIVSNP--PFH-AGG--DDGLDLLRDFIEQARRYLKPGGRLFLVI-NSHLGY-ER- 148 (170)
T ss_dssp -------------------TTCEEEEEE-----SB-TTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH-HH-
T ss_pred -------------------ccceeEEEEcc--chh-ccc--ccchhhHHHHHHHHHHhccCCCEEEEEe-ecCCCh-HH-
Confidence 36799999942 100 000 0011235889999999999999987644 333332 22
Q ss_pred HHHHHHhccceEEEe
Q 004133 702 ISRMKMVFNHLFCLQ 716 (772)
Q Consensus 702 ~~~l~~vF~~v~~~~ 716 (772)
.+++.|..+..+.
T Consensus 149 --~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 149 --LLKELFGDVEVVA 161 (170)
T ss_dssp --HHHHHHS--EEEE
T ss_pred --HHHHhcCCEEEEE
Confidence 2788998777665
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-08 Score=103.77 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHH
Q 004133 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVV 103 (772)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~ 103 (772)
+..+++--+.|...+....-.+|....-+..++ +.. .+..+|||+|||+|.++..++.. +..+|+++|+++.|
T Consensus 27 ~~~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~---~~~---~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~a 100 (279)
T PHA03411 27 YEEKEFCYNNYHGDGLGGSGAFFTPEGLAWDFT---IDA---HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEF 100 (279)
T ss_pred cCcHHHHHHhcccccccCceeEcCCHHHHHHHH---hcc---ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 446666666665442112223444433332322 222 34579999999999999888775 23579999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccch-----------HH--HHHHHHHHHhccc
Q 004133 104 ISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGH-----------KL--GNQYLSEVKRLLK 170 (772)
Q Consensus 104 I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~-----------~~--~~~~l~ei~rvLk 170 (772)
++.++++. ++++|+++|+.++. ...+||+|+++..+.++...+... .. ..+.+..+.++|+
T Consensus 101 l~~Ar~n~----~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~ 174 (279)
T PHA03411 101 ARIGKRLL----PEAEWITSDVFEFE--SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIV 174 (279)
T ss_pred HHHHHHhC----cCCEEEECchhhhc--ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheec
Confidence 99887653 47899999999875 357899999999888764422111 00 3678899999999
Q ss_pred cCeEEEEEEcCch
Q 004133 171 SGGKFVCLTLAES 183 (772)
Q Consensus 171 pGG~~ii~~~~~~ 183 (772)
|+|.++++--+.+
T Consensus 175 p~G~~~~~yss~~ 187 (279)
T PHA03411 175 PTGSAGFAYSGRP 187 (279)
T ss_pred CCceEEEEEeccc
Confidence 9998877644433
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-09 Score=106.46 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=78.1
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
..++|+|||||.-+.-++.. +++|+++|+|++||+.+++.....+. ..++...++.++. -.+++.|+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhhhHHh
Confidence 38999999999777777776 78899999999999988654422222 2334444555554 34899999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCe-EEEEEEcCc
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAE 182 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG-~~ii~~~~~ 182 (772)
+. .++++++++|+||+.| .+.+-.|.+
T Consensus 113 Fd--------le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 113 FD--------LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred hc--------hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 85 4789999999999876 666666664
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.7e-08 Score=98.02 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=98.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...++|.||+|.|.+...+....|...+++||+++.+++.|++...-..-.+++++.+|+.++.....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~------------ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF------------ 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC------------
Confidence 45689999999999999999999999999999999999999876522112479999999999875532
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
....+|.|+++.-.+.+. -......++..+|++.+.+.|+|||.|.+.. ........+
T Consensus 84 ------------------~~~~~d~v~~~~pdpw~k--~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~ 141 (194)
T TIGR00091 84 ------------------PDGSLSKVFLNFPDPWPK--KRHNKRRITQPHFLKEYANVLKKGGVIHFKT--DNEPLFEDM 141 (194)
T ss_pred ------------------CCCceeEEEEECCCcCCC--CCccccccCCHHHHHHHHHHhCCCCEEEEEe--CCHHHHHHH
Confidence 124699999965322111 0001234667899999999999999998754 445555556
Q ss_pred HHHHHHhc
Q 004133 702 ISRMKMVF 709 (772)
Q Consensus 702 ~~~l~~vF 709 (772)
++.+.+..
T Consensus 142 ~~~~~~~~ 149 (194)
T TIGR00091 142 LKVLSEND 149 (194)
T ss_pred HHHHHhCC
Confidence 66666653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-08 Score=103.21 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-cccCCCccEEEeccccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-VFMDETFDVILDKGGLD 146 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l~ 146 (772)
..+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++++...+ .++.++|+.+.. ....++||+|+++-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999998875 33479999999999999987764432 589999987632 01135799999875432
Q ss_pred c------c-------------ccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 147 A------L-------------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~------l-------------~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
- + ....++...+..+++.+.++|+|||++++..-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 1 11112233467899999999999999997754
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-08 Score=98.56 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=78.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+||.||+|+|.++..+....|..+|++||+++.+++.|++.. |+ ++++++.+|+.++. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~---~---------- 106 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ---H---------- 106 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc---c----------
Confidence 57899999999999999888888889999999999999988764 44 35999999987751 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|+++.. . . -..+++.+.+.|+|||.+++-.
T Consensus 107 ---------------------~~~fD~I~s~~~-~----~---------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 ---------------------EEQFDVITSRAL-A----S---------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---------------------cCCccEEEehhh-h----C---------HHHHHHHHHHhcCCCCEEEEEc
Confidence 257999998541 1 1 1578899999999999999764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=93.75 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=94.1
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l 128 (772)
.+++......|.. .+++.++|+|||+|.++.+++..+ ..+|+++|-++.+++..+++..+- .++++.+.+|+-+.
T Consensus 20 ~EIRal~ls~L~~---~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRP---RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCC---CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 4556555566654 789999999999999999998553 357999999999999887665432 46899999999875
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
- -...+||.|+..+.- . ++.+|+.+...|||||+++.....-++..
T Consensus 97 L-~~~~~~daiFIGGg~-~----------i~~ile~~~~~l~~ggrlV~naitlE~~~ 142 (187)
T COG2242 97 L-PDLPSPDAIFIGGGG-N----------IEEILEAAWERLKPGGRLVANAITLETLA 142 (187)
T ss_pred h-cCCCCCCEEEECCCC-C----------HHHHHHHHHHHcCcCCeEEEEeecHHHHH
Confidence 3 122279999998872 2 57899999999999999998766655443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=112.57 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=89.4
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc-ccCC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV-FMDE 134 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~-~~~~ 134 (772)
+...+.. .++.+|||+|||+|..+..++..+. ..|+++|+|+.+++.+++++...+.+++++++|+.+++. +..+
T Consensus 236 ~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 236 AATLLAP---QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHcCC---CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccC
Confidence 3444543 5789999999999999999988742 479999999999999988886666668899999987641 2357
Q ss_pred CccEEEecccccc---cc-cCc----cch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 135 TFDVILDKGGLDA---LM-EPE----LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 135 sfDvVi~~~~l~~---l~-~~~----~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+||.|+....... +. .++ ..+ ....+++..+.++|||||++++.+.+
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 8999995432211 10 000 000 12457999999999999999988754
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=99.43 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++... ..+++++++|+.+++ +++..||.|+++-.++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCC-ccccCCCEEEECCCcc
Confidence 467899999999999999999985 4799999999999999877643 458999999999998 7777899999876554
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-08 Score=98.11 Aligned_cols=131 Identities=13% Similarity=0.181 Sum_probs=93.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHh-hcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE-MKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~-~~~~~~~~~~~~~ 620 (772)
...+||.||+|.|.++..|...+|..+|++||+++.+++.|++.+....-++++++++|+.+.+.. ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~----------- 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP----------- 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-----------
Confidence 457899999999999999999889889999999999999999887432235799999999555443 22
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
...||+|++.. +++.......-.......+|+.+.+.|+|||+|++-. ........
T Consensus 109 --------------------~~~~D~V~~~~--~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~ 164 (202)
T PRK00121 109 --------------------DGSLDRIYLNF--PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEY 164 (202)
T ss_pred --------------------ccccceEEEEC--CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHH
Confidence 35699999843 1110000000112345889999999999999999643 45555555
Q ss_pred HHHHHHH
Q 004133 701 VISRMKM 707 (772)
Q Consensus 701 v~~~l~~ 707 (772)
+++.+++
T Consensus 165 ~~~~~~~ 171 (202)
T PRK00121 165 MLEVLSA 171 (202)
T ss_pred HHHHHHh
Confidence 5666554
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=107.34 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc------CCCCcEEEEeeccCcccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~------~~~~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
.+.+||++|||+|..+..+.+. +..+|++||+++.+++.+++.+.. ..++++++.+|+.+.-....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 567899999999999999876532 356899999999874313467899999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...+-.+... . .-....+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~-~--~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPA-E--GLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCch-h--hhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 7543222111 0 0113678999999999999998753
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-08 Score=118.24 Aligned_cols=152 Identities=16% Similarity=0.051 Sum_probs=101.9
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
||-+....+..+.++. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .+++|++
T Consensus 522 ~flDqr~~R~~~~~~~------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~ 595 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ 595 (702)
T ss_pred ECHHHHHHHHHHHHhc------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE
Confidence 4555445555555554 367999999999999999999887789999999999999988875543 2589999
Q ss_pred eeccCcccccCCCccEEEecccccccccC----ccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCc
Q 004133 123 MDMTSMQVFMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGW 197 (772)
Q Consensus 123 ~D~~~l~~~~~~sfDvVi~~~~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w 197 (772)
+|+.+...-..++||+|++......-... ......+..++..+.++|+|||.+++.+... ++... ...+ ..++
T Consensus 596 ~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-~~~~~-~~~~~~~g~ 673 (702)
T PRK11783 596 ADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-GFKMD-EEGLAKLGL 673 (702)
T ss_pred ccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-cCChh-HHHHHhCCC
Confidence 99977420125689999875432211000 0011226788999999999999998776543 22221 1112 2356
Q ss_pred EEEEEEcC
Q 004133 198 KMSVHAIP 205 (772)
Q Consensus 198 ~~~~~~~~ 205 (772)
.++.....
T Consensus 674 ~~~~i~~~ 681 (702)
T PRK11783 674 KAEEITAK 681 (702)
T ss_pred eEEEEecC
Confidence 66665543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-08 Score=106.45 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=84.1
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccC
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~ 127 (772)
+.+...+.+.+.. .++.+|||+|||+|.++..+++. +. ..|+++|+++.+++.++++....+ .++.++++|+.+
T Consensus 66 p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 66 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 3444555555544 57789999999999999999886 22 359999999999999987764433 468999999887
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.. ...++||+|++...+.. ....+.++|+|||++++..
T Consensus 143 ~~-~~~~~fD~Ii~~~g~~~-------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GV-PEFAPYDVIFVTVGVDE-------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cc-cccCCccEEEECCchHH-------------hHHHHHHhcCCCCEEEEEe
Confidence 65 45578999998654432 3345678999999988754
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=101.82 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=84.5
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecc
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMT 126 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~ 126 (772)
.+.+...+.++++. .|+++|||||||+|..+..|+.. |. ..|+++|+.+..++.|+++....+ .++.++++|..
T Consensus 57 ~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 57 APSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp -HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred HHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence 35566667777775 79999999999999999998886 43 359999999999999998886544 38999999987
Q ss_pred CcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 127 SMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 127 ~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.-- -....||.|+.......++ ..+.+.|++||++++..
T Consensus 134 ~g~-~~~apfD~I~v~~a~~~ip-------------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 134 EGW-PEEAPFDRIIVTAAVPEIP-------------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GTT-GGG-SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEE
T ss_pred hcc-ccCCCcCEEEEeeccchHH-------------HHHHHhcCCCcEEEEEE
Confidence 643 3567899999988775442 35677899999999864
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-08 Score=103.27 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
++.+|||+|||+|.++..++.. +..+|+++|+++.+++.+++.+... .++++++++|+.+.-.-..++||+|+...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 4579999999999999988876 4457999999999999998876432 36799999998764202246899998643
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
++....++ .-....+++++.++|+|||++++..+..+.
T Consensus 145 ~~~~~~~~--~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 145 FDGEGIID--ALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred CCCCCCcc--ccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 22110000 001368999999999999999987665543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.6e-08 Score=110.42 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=88.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcE--EEEeeccCcccc
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMR--WRVMDMTSMQVF 131 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~--f~~~D~~~l~~~ 131 (772)
..+...+.. .++.+|||+|||+|..+..++.. +...|+++|+++.+++.++++....+..+. +..+|..+.+ +
T Consensus 228 ~~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~-~ 303 (426)
T TIGR00563 228 QWVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS-Q 303 (426)
T ss_pred HHHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc-c
Confidence 344455544 57899999999999999998876 434799999999999999888765544433 3667766554 3
Q ss_pred --cCCCccEEEec------ccccccccCc--cch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 132 --MDETFDVILDK------GGLDALMEPE--LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 132 --~~~sfDvVi~~------~~l~~l~~~~--~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
..++||.|+.. |++...++-. ..+ ....++|.++.++|||||+++++|.+-
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 46789999853 3443322100 000 124689999999999999999988764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.9e-08 Score=94.27 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=80.8
Q ss_pred cccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
+|-|.....+...+.......+.-.+.+|+|+|||||.++...+-.|...|+|+|+.+.+++.++++..+...++.|.++
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~ 100 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVA 100 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEc
Confidence 34455545555555444433233456789999999999999999899888999999999999999888776668999999
Q ss_pred eccCcccccCCCccEEEeccccccccc
Q 004133 124 DMTSMQVFMDETFDVILDKGGLDALME 150 (772)
Q Consensus 124 D~~~l~~~~~~sfDvVi~~~~l~~l~~ 150 (772)
|+.+.. ..||.|+.+-.+.....
T Consensus 101 dv~~~~----~~~dtvimNPPFG~~~r 123 (198)
T COG2263 101 DVSDFR----GKFDTVIMNPPFGSQRR 123 (198)
T ss_pred chhhcC----CccceEEECCCCccccc
Confidence 999877 67899998888776544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.8e-08 Score=96.98 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=91.0
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ 129 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~ 129 (772)
+.+...+.+.+.. .++.+|||||||+|..+.-|++..- +|+.+|..+...+.|++++...+. ++.+.++|-..--
T Consensus 58 P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 58 PHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred cHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 4555666677765 7899999999999999999999844 799999999999999988865543 7999999998742
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
-....||.|+.......++. .+.+.||+||++++-.-
T Consensus 134 -~~~aPyD~I~Vtaaa~~vP~-------------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 -PEEAPYDRIIVTAAAPEVPE-------------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -CCCCCcCEEEEeeccCCCCH-------------HHHHhcccCCEEEEEEc
Confidence 24589999999887776643 56778999999988653
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=108.29 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=89.9
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCccccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFM 132 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~ 132 (772)
.+...+.. .++.+|||+|||+|..+..++.. +...|+++|+|+.+++.+++++...+. ++++.++|+.+++.+.
T Consensus 228 ~~~~~l~~---~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 228 IVPLLMEL---EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV 304 (431)
T ss_pred HHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence 34444543 57889999999999999988875 234799999999999999888765443 5889999998865344
Q ss_pred CCCccEEEecccc---ccccc-Ccc----ch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 133 DETFDVILDKGGL---DALME-PEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 133 ~~sfDvVi~~~~l---~~l~~-~~~----~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++||.|+..... ..+.. ++. .+ ....++|..+.++|||||++++.|.+-
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 6789999863322 11111 100 00 124678999999999999999988764
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.9e-08 Score=101.51 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++++....+ .++++.+.|+.+++ ...+.||+|+...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcC
Confidence 57889999999999999988875 2 2469999999999999988875544 36899999998876 4566799998532
Q ss_pred cccc---cc-cCcc----ch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDA---LM-EPEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~---l~-~~~~----~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.... +. +++. .+ ....++|+.+.++|||||+++..+.+-
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2111 11 1100 00 123569999999999999999887653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=106.01 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=92.0
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
||-+....+..+..+. ++.+|||+|||+|.++...+..|..+|+++|+|+.+++.+++++...+ .++++++
T Consensus 204 ~flDqr~~R~~~~~~~------~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~ 277 (396)
T PRK15128 204 YYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277 (396)
T ss_pred cChhhHHHHHHHHHhc------CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 5555444555555543 467999999999999988776677689999999999999988776544 2689999
Q ss_pred eeccCcc-cc--cCCCccEEEecccccccccCc--cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 123 MDMTSMQ-VF--MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 123 ~D~~~l~-~~--~~~sfDvVi~~~~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+.+.- .+ ..++||+|++......-.... .....+..++..+.++|+|||.++..+.+
T Consensus 278 ~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 278 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9998752 12 246899999765432211100 00012567777889999999999987754
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=100.91 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=88.6
Q ss_pred eEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccc--
Q 004133 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLD-- 146 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~-- 146 (772)
+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+ .++.+++.|+..-- .++||+|+++-..=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---CCceeEEEeCCCCCCC
Confidence 799999999999999998843 479999999999999988876655 45566666766532 24899999765421
Q ss_pred ----------------ccccCccchHHHHHHHHHHHhccccCeEEEEEE-cCchhhhhccccccc
Q 004133 147 ----------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFPKFR 194 (772)
Q Consensus 147 ----------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~-~~~~~~~~~l~~~~~ 194 (772)
++....++...+.+++.++.+.|+|||.+++.. +.+......++....
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~ 254 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTG 254 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcC
Confidence 111122333458999999999999999988754 566555555555444
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=95.36 Aligned_cols=117 Identities=10% Similarity=0.120 Sum_probs=86.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|+|.++..+....|..+|++||+++.+++.|++.+....-++++++.+|+... .
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---~------------ 94 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---L------------ 94 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---c------------
Confidence 3456899999999999999998888889999999999999999875221114699999986321 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+++.... .-..+++.+.+.|+|||.++++.+.... ...
T Consensus 95 --------------------~~~~D~v~~~~~~~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~ 139 (187)
T PRK08287 95 --------------------PGKADAIFIGGSGG-------------NLTAIIDWSLAHLHPGGRLVLTFILLEN--LHS 139 (187)
T ss_pred --------------------CcCCCEEEECCCcc-------------CHHHHHHHHHHhcCCCeEEEEEEecHhh--HHH
Confidence 14699999853111 1167899999999999999998754322 234
Q ss_pred HHHHHHH
Q 004133 701 VISRMKM 707 (772)
Q Consensus 701 v~~~l~~ 707 (772)
+...+++
T Consensus 140 ~~~~l~~ 146 (187)
T PRK08287 140 ALAHLEK 146 (187)
T ss_pred HHHHHHH
Confidence 4555544
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-07 Score=93.65 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=89.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+||.+|+|+|.++..+.... +..+|++||+++.+++.|++.+.... .+++.++.+|+.+++....
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~--------- 109 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN--------- 109 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC---------
Confidence 345689999999999988887654 55699999999999999987752211 3678999999988775532
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
..||+|++..... .-..+++.+.+.|+|+|.+++... ..+..
T Consensus 110 -----------------------~~~D~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~ 151 (198)
T PRK00377 110 -----------------------EKFDRIFIGGGSE-------------KLKEIISASWEIIKKGGRIVIDAI--LLETV 151 (198)
T ss_pred -----------------------CCCCEEEECCCcc-------------cHHHHHHHHHHHcCCCcEEEEEee--cHHHH
Confidence 4699999853211 116789999999999999998664 22333
Q ss_pred HHHHHHHHHh
Q 004133 699 DMVISRMKMV 708 (772)
Q Consensus 699 ~~v~~~l~~v 708 (772)
..+...+++.
T Consensus 152 ~~~~~~l~~~ 161 (198)
T PRK00377 152 NNALSALENI 161 (198)
T ss_pred HHHHHHHHHc
Confidence 4556666543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-09 Score=104.97 Aligned_cols=101 Identities=24% Similarity=0.318 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
.+-.++||+|||||..+..|.+.- ..++|+|||+.|++.|.++-. -=+..++|+..+. ...++.||+|.+..+|
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~----YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGL----YDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccc----hHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 346799999999999999998873 369999999999998866531 1233444444322 1356789999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.++-. ++.++--+...|+|||.|.++.
T Consensus 199 ~YlG~-------Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PYLGA-------LEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred Hhhcc-------hhhHHHHHHHhcCCCceEEEEe
Confidence 99876 6789999999999999998875
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.3e-08 Score=109.65 Aligned_cols=114 Identities=23% Similarity=0.156 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEec-
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDK- 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~- 142 (772)
.++.+|||+|||+|..+..+++. +...|+++|+|+.+++.+++++...+. +++++++|+.++. ++++||+|+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 57789999999999999888764 234799999999999999888755443 5899999998875 56789999852
Q ss_pred -----cccccc------ccCccc---hHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 143 -----GGLDAL------MEPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 143 -----~~l~~l------~~~~~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++..- ..+++- .....++|.++.++|||||++++.|.+-
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 222110 000000 0113478999999999999999988764
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=97.50 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=96.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+|+..|.|+|+|+++|.... |..+|+.+|++++.++.|++.| |+ .+++++..+|..+.+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~~~~--------- 161 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREGIDE--------- 161 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEeccccccccc---------
Confidence 345799999999999999999755 5579999999999999999987 55 56689999998776333
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
..||+|++|+-.+ .++++.+++.|+|||.+++-+.+- +
T Consensus 162 -------------------------~~vDav~LDmp~P---------------W~~le~~~~~Lkpgg~~~~y~P~v--e 199 (256)
T COG2519 162 -------------------------EDVDAVFLDLPDP---------------WNVLEHVSDALKPGGVVVVYSPTV--E 199 (256)
T ss_pred -------------------------cccCEEEEcCCCh---------------HHHHHHHHHHhCCCcEEEEEcCCH--H
Confidence 3699999988444 899999999999999999876543 3
Q ss_pred HHHHHHHHHHHh-ccceE
Q 004133 697 TKDMVISRMKMV-FNHLF 713 (772)
Q Consensus 697 ~~~~v~~~l~~v-F~~v~ 713 (772)
..+.++..|++. |-++-
T Consensus 200 Qv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 200 QVEKTVEALRERGFVDIE 217 (256)
T ss_pred HHHHHHHHHHhcCccchh
Confidence 445568888887 66533
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-07 Score=94.92 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~----g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+.+|||+|||+|.++..++.. +..+|+++|+++.+++.|+++. +++.|...|+.+.+ + +++||+||++-
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~-~-~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTTE-F-DTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhccc-c-cCCccEEEECC
Confidence 4679999999999999988764 2347999999999999997654 35899999998776 4 57999999988
Q ss_pred cccccccCcc-----chHHHHHHHHHHHhccccCeE
Q 004133 144 GLDALMEPEL-----GHKLGNQYLSEVKRLLKSGGK 174 (772)
Q Consensus 144 ~l~~l~~~~~-----~~~~~~~~l~ei~rvLkpGG~ 174 (772)
-+.-+..... +......+++.+.+++++|+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 8765442211 113366788999997777764
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-07 Score=98.34 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=94.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEe-eccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~-D~~~l 128 (772)
+.+...+.++... +++..|||.-||||.+.....-.|. +++|+|++..|++.++.++..-+ ....+..+ |++++
T Consensus 183 P~lAR~mVNLa~v---~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARV---KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhcc---ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 3455555555554 6788999999999999999888887 69999999999999987774332 34555555 99999
Q ss_pred ccccCCCccEEEeccccccccc--CccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 129 QVFMDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~--~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+ +++.+||.|+.....---.. .+.-..++.++|+.++++||+||++++...
T Consensus 259 p-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 P-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred C-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9 99999999986433221111 111134589999999999999999998875
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.9e-08 Score=93.37 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=85.0
Q ss_pred CCCeEEEEcccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
+..+||.||+|.|.+...|. ...|..++++||+++.+++.|++.+ ++ ++++++++|..+ +...-
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~-l~~~~-------- 70 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIED-LPQEL-------- 70 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTC-GCGCS--------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhc-ccccc--------
Confidence 46789999999999999999 5667889999999999999999965 55 389999999877 33210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc-HHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~-~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
...||+|+....- ..+-+ ..+|+.+.+.|+++|++++.......+
T Consensus 71 -----------------------~~~~D~I~~~~~l-----------~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 71 -----------------------EEKFDIIISNGVL-----------HHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp -----------------------STTEEEEEEESTG-----------GGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred -----------------------CCCeeEEEEcCch-----------hhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 1579999985311 12222 579999999999999999887664444
Q ss_pred HH
Q 004133 697 TK 698 (772)
Q Consensus 697 ~~ 698 (772)
..
T Consensus 117 ~~ 118 (152)
T PF13847_consen 117 LP 118 (152)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=105.90 Aligned_cols=124 Identities=22% Similarity=0.224 Sum_probs=89.0
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc--
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV-- 130 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~-- 130 (772)
.+...+.. .++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++++....+ .+++++++|+.+++.
T Consensus 243 l~~~~l~~---~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 243 LVAPLLDP---QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHhCC---CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 34444543 57899999999999999999876 2 2479999999999999988875544 368999999987641
Q ss_pred -ccCCCccEEEec------ccccccccCc--cch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 131 -FMDETFDVILDK------GGLDALMEPE--LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 131 -~~~~sfDvVi~~------~~l~~l~~~~--~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+..++||.|+.. |++..-.+.. ..+ ....++|.++.++|||||+++..|.+-
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 235789999853 2333221100 000 114688999999999999999887553
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=106.02 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=87.0
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc-cc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-VF 131 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-~~ 131 (772)
.+...+.. .++.+|||+|||+|..+..+++. +...|+++|+++.+++.++++....+ .+++++++|+.++. .+
T Consensus 241 lv~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDP---KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 44445543 56789999999999999999875 23579999999999999988775544 35899999998863 12
Q ss_pred cCCCccEEEecccccc---cc-cCc----cch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 132 MDETFDVILDKGGLDA---LM-EPE----LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~---l~-~~~----~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+ ++||+|+....... +. .++ ..+ .....+++.+.++|||||+++..+.+
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 78999986532211 10 000 000 01356899999999999999976644
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-07 Score=95.93 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=103.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|.|.|..+.++....++ ..|++||+++..++.+++.+....-.+++++.+|+..+-..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~------------- 137 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA------------- 137 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-------------
Confidence 4468999999999999998887753 58999999999999999887321124689999999775221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCCCcEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLF 686 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~~Gil 686 (772)
...||+|++|+-.+. .|+-...+.. ...++|+.+.+.|+|||.+
T Consensus 138 --------------------~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l 195 (264)
T TIGR00446 138 --------------------VPKFDAILLDAPCSG--EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVL 195 (264)
T ss_pred --------------------ccCCCEEEEcCCCCC--CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 135999999984431 2322222221 3467999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhccceE
Q 004133 687 IVNLVSRSQATKDMVISRMKMVFNHLF 713 (772)
Q Consensus 687 v~Nl~~~~~~~~~~v~~~l~~vF~~v~ 713 (772)
+.-..+.+.+..+.+++.+.+.++...
T Consensus 196 vYstcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 196 VYSTCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EEEeCCCChHHHHHHHHHHHHhCCCcE
Confidence 998878888888889999988877644
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-07 Score=93.48 Aligned_cols=105 Identities=19% Similarity=0.141 Sum_probs=81.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..+....|..+|++||+||.+++.|++++....-++++++.+|+.+.+....
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~------------ 107 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA------------ 107 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC------------
Confidence 44689999999999999888877888999999999999999987521112469999999977544322
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
..+|.|++|... . -..+++.+.+.|+|||.|+++...
T Consensus 108 --------------------~~~d~v~~~~~~-----~---------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 --------------------PAPDRVCIEGGR-----P---------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --------------------CCCCEEEEECCc-----C---------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 336778875311 0 168999999999999999998764
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-07 Score=97.80 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=79.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++..|...+|..+|++||++|.+++.|++. +++++.+|+.++. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~----------- 86 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK---P----------- 86 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC---C-----------
Confidence 456799999999999999999998888999999999999999863 4788899986541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...||+|++..-- .-+ | -...+++.+.+.|+|||.+++++..
T Consensus 87 --------------------~~~fD~v~~~~~l----~~~--~----d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 --------------------KPDTDVVVSNAAL----QWV--P----EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------------------CCCceEEEEehhh----hhC--C----CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 2569999983211 111 1 1277999999999999999998754
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.8e-07 Score=96.08 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=84.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+.+||.+|+|+|+++..+....|..+|++||+++.++++|++..... -+++++++.+|..+.+ .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---~----------- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---P----------- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc---C-----------
Confidence 346899999999999999999999899999999999999999987321 1468999999986543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC--CCCC-----CcCCcCC--------CcHHHHHHHHHccCCCcE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS--SSGM-----TCPAADF--------VEGSFLLTVKDALSEQGL 685 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~--~~g~-----s~Pp~~f--------~~~~fl~~~~~~L~~~Gi 685 (772)
..+||+|+.|---... ...+ ..|...+ .-..++..+.+.|+|||.
T Consensus 187 --------------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 187 --------------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred --------------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 2469999986310000 0001 0111111 125688999999999999
Q ss_pred EEEEec
Q 004133 686 FIVNLV 691 (772)
Q Consensus 686 lv~Nl~ 691 (772)
+++.+.
T Consensus 247 l~~e~g 252 (284)
T TIGR03533 247 LVVEVG 252 (284)
T ss_pred EEEEEC
Confidence 999885
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-07 Score=87.51 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHh---cCCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~---Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+..+++.||.|+|+++..+....|..+|+++|-|++.++..++. ||+ +++.++.+||-++|.+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~L~~~--------- 100 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEALPDL--------- 100 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHhhcCC---------
Confidence 344689999999999999988888999999999999999998866 574 78999999999998764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
..+|.||+-- . .++ ++.|+.+..+|+++|.+|+|.+.-...
T Consensus 101 ------------------------~~~daiFIGG----g-~~i---------~~ile~~~~~l~~ggrlV~naitlE~~- 141 (187)
T COG2242 101 ------------------------PSPDAIFIGG----G-GNI---------EEILEAAWERLKPGGRLVANAITLETL- 141 (187)
T ss_pred ------------------------CCCCEEEECC----C-CCH---------HHHHHHHHHHcCcCCeEEEEeecHHHH-
Confidence 2599999922 1 233 889999999999999999999765433
Q ss_pred HHHHHHHHHHhcc-ceEEEee
Q 004133 698 KDMVISRMKMVFN-HLFCLQL 717 (772)
Q Consensus 698 ~~~v~~~l~~vF~-~v~~~~~ 717 (772)
...++.+++.=- ++..+.+
T Consensus 142 -~~a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 142 -AKALEALEQLGGREIVQVQI 161 (187)
T ss_pred -HHHHHHHHHcCCceEEEEEe
Confidence 233555544322 5555543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=6e-07 Score=95.79 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=99.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.+|+|.|.++..+...+|..+++++|+++.+++.|++.+......+++++.+|..+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-------------- 172 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-------------- 172 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--------------
Confidence 345789999999999999999999989999999999999999999762234679999998743211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC--CC------CcCCcCCC--------cHHHHHHHHHccCCCc
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GM------TCPAADFV--------EGSFLLTVKDALSEQG 684 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~--g~------s~Pp~~f~--------~~~fl~~~~~~L~~~G 684 (772)
..+||+|+.+.--..... .+ ..|...+. -..+++.+.+.|+|||
T Consensus 173 --------------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG 232 (275)
T PRK09328 173 --------------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGG 232 (275)
T ss_pred --------------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCC
Confidence 257999998531110000 00 01112222 2568888899999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHH-hccceEEEeecCCceEEEEEe
Q 004133 685 LFIVNLVSRSQATKDMVISRMKM-VFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 685 ilv~Nl~~~~~~~~~~v~~~l~~-vF~~v~~~~~~~~~N~vl~a~ 728 (772)
.+++....... ..+...+++ -|..+..+.--.+.++++++.
T Consensus 233 ~l~~e~g~~~~---~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 233 WLLLEIGYDQG---EAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred EEEEEECchHH---HHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 99997633222 233344433 355555444233456666653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-06 Score=89.34 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=78.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+.+.. |..+|++||++|.+++.|++.+.-..-++++++.+|+.++- .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~----------- 110 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--F----------- 110 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--C-----------
Confidence 345799999999999999888775 56799999999999999998863222257999999986531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...+||+|++...-. .+.. ...+|+.+.+.|+|||.+++
T Consensus 111 --------------------~~~~fD~V~~~~~l~----~~~~------~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 --------------------DDNSFDYVTIGFGLR----NVPD------YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred --------------------CCCCccEEEEecccc----cCCC------HHHHHHHHHHHcCcCeEEEE
Confidence 135799999743111 1111 25789999999999999886
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.2e-07 Score=101.93 Aligned_cols=135 Identities=9% Similarity=0.112 Sum_probs=89.7
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc----c
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----Q 129 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l----~ 129 (772)
..+..++.. .++.+|||+|||+|.++..++..+ ..|+|+|+|+.|++.|++++...+ .+++|.++|+.+. +
T Consensus 287 ~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 287 ARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344444443 467899999999999999999886 579999999999999988765433 3699999999753 2
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
+.+++||+|+....-.- ....++.+.+ ++|++.+++. .....+.+.+......+|.+.-....+
T Consensus 363 -~~~~~fD~Vi~dPPr~g----------~~~~~~~l~~-~~~~~ivyvS-Cnp~tlaRDl~~L~~~gY~l~~i~~~D 426 (443)
T PRK13168 363 -WALGGFDKVLLDPPRAG----------AAEVMQALAK-LGPKRIVYVS-CNPATLARDAGVLVEAGYRLKRAGMLD 426 (443)
T ss_pred -hhcCCCCEEEECcCCcC----------hHHHHHHHHh-cCCCeEEEEE-eChHHhhccHHHHhhCCcEEEEEEEec
Confidence 44578999986432211 2345555555 5787765544 444444444333323466665544433
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-07 Score=96.98 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|||||+|+|.++..+++. +.-+++..|. |.+++.+++ ..+++++.+|+. -+ +|. +|+++.+++|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~-~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DP-LPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TC-CSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hh-hcc--ccceeeehhh
Confidence 45579999999999999999887 4447999998 778888866 568999999999 45 565 9999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccC--eEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpG--G~~ii~~~~ 181 (772)
|...+++ ...+|+++++.|+|| |++++++..
T Consensus 169 h~~~d~~-----~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 169 HDWSDED-----CVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGS-HHH-----HHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhcchHH-----HHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9987654 789999999999999 999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.7e-07 Score=92.51 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
...+.||.|||-|+.+..+.-.-|..|..+|..+..++.|++....... -.++.+.-+.++. .+..+||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-CCCCcEeEEEehHhhc
Confidence 4579999999999999888666688999999999999999877654333 3678899999887 4567999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh-----------hh---hcccccc-cCCcEEEEEEcCCCCCCC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-----------VL---GLLFPKF-RFGWKMSVHAIPQKSSSE 211 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~-----------~~---~~l~~~~-~~~w~~~~~~~~~~~~~~ 211 (772)
|+.+.+ ..++|+.+...|+|||.+++-...... +. +.+.+-| ..++.+......... ++
T Consensus 134 hLTD~d-----lv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~f-P~ 207 (218)
T PF05891_consen 134 HLTDED-----LVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGF-PK 207 (218)
T ss_dssp GS-HHH-----HHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT---T
T ss_pred cCCHHH-----HHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCC-Cc
Confidence 998865 899999999999999999884322110 00 0122222 236666555544322 34
Q ss_pred CCcceEEEEEE
Q 004133 212 PSLQTFMVVAD 222 (772)
Q Consensus 212 ~~l~~f~~~~~ 222 (772)
.-+|+++|..+
T Consensus 208 ~L~pV~myaLr 218 (218)
T PF05891_consen 208 ELYPVRMYALR 218 (218)
T ss_dssp TS-EEEEEEEE
T ss_pred cceEEEEEEeC
Confidence 67888888653
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.3e-07 Score=97.86 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
.+.+||++|||+|.++..+.+.+ ..+++++|+++.+++.+++.+.. ..++++++.+|..+.-....++||+|+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999998888874 56899999999999999876532 2357888888876632123578999997
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
......- ... .-....+++.+.++|+|||++++..
T Consensus 152 D~~~~~~-~~~--~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVG-PAE--TLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCC-ccc--chhHHHHHHHHHHHhCCCcEEEEcC
Confidence 5542211 110 0114688999999999999999863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.3e-07 Score=100.48 Aligned_cols=138 Identities=13% Similarity=0.191 Sum_probs=105.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|.|.|..+..+....+ ..+|+++|+++..++.+++.+ |+ .+++++.+|+..+-...
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~~--------- 304 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEYV--------- 304 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhhh---------
Confidence 446899999999999998888763 469999999999999999886 54 35899999998763221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~~ 683 (772)
..+||.|++|+-.+. .|+..-.++. +..+.|..+.+.|+||
T Consensus 305 -----------------------~~~fD~Vl~DaPCsg--~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 305 -----------------------QDTFDRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred -----------------------hccCCEEEECCCCCC--CccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999985542 2332222221 3577899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccceEEEe
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
|.+++-..+..++..+.++..+-+-++.....+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVID 392 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEec
Confidence 999999988888888888888877676654333
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.3e-07 Score=96.41 Aligned_cols=147 Identities=14% Similarity=0.197 Sum_probs=97.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+||.+|+|.|+++..+...+|..+|++||+++.++++|++..... ..++++++.+|..+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---------------- 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---------------- 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----------------
Confidence 6899999999999999999999999999999999999999987321 14679999999866431
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCC-CCCC-----CcCCcCCC--------cHHHHHHHHHccCCCcEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDS-SSGM-----TCPAADFV--------EGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~-~~d~-~~g~-----s~Pp~~f~--------~~~fl~~~~~~L~~~Gilv 687 (772)
..+||+|+.+-- .+.. ...+ ..|...+. -..+++.+.+.|+|||.++
T Consensus 199 ------------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 199 ------------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred ------------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 146999998521 0000 0000 11222221 2578899999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEecC
Q 004133 688 VNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSS 730 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~~ 730 (772)
+.+... .. .+.+.+.. . ....+....+.-.++++..+
T Consensus 261 ~E~g~~-~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 297 (307)
T PRK11805 261 VEVGNS-RV---HLEEAYPD-V-PFTWLEFENGGDGVFLLTRE 297 (307)
T ss_pred EEECcC-HH---HHHHHHhh-C-CCEEEEecCCCceEEEEEHH
Confidence 987432 22 22333332 1 12234444555666666644
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.9e-07 Score=97.95 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcc-cccCCCccEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ-VFMDETFDVI 139 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~-~~~~~sfDvV 139 (772)
..+.+||++|||.|.++..+++.. ..+|+.+|+++.+++.+++.+.. ..++++++.+|+...- ..+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 356899999999999999998873 46799999999999999886532 2468999999986542 1235789999
Q ss_pred EecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+....-..... ..-....+++.++++|+|||+++..
T Consensus 170 i~D~~dp~~~~---~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPA---QELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCch---hhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 97443221110 0011467899999999999999763
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-07 Score=95.30 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=81.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|....|..+|++||+++.+++.|++.+ ++++++.+|+.++. .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~---~----------- 90 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ---P----------- 90 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC---C-----------
Confidence 3457899999999999999999888889999999999999999885 35889999987652 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
..+||+|+....- ..+ + -...+|+.+.+.|+|||.+++.+..
T Consensus 91 --------------------~~~fD~v~~~~~l----~~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 91 --------------------PQALDLIFANASL----QWL---P---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred --------------------CCCccEEEEccCh----hhC---C---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 2479999974211 111 0 1368999999999999999998643
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-07 Score=94.99 Aligned_cols=112 Identities=16% Similarity=0.024 Sum_probs=83.1
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l- 128 (772)
..++..++.. .++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|++++...+ .+++++.+|+.+.
T Consensus 57 g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 3344444443 45789999999999988877764 34579999999999999988876544 3689999999874
Q ss_pred ccc----cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 129 QVF----MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 129 ~~~----~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+.+ +.++||+|+... -. ..+..+++.+.++|+|||.+++-
T Consensus 134 ~~l~~~~~~~~fD~VfiDa----~k------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDA----DK------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHhCCCCCCCCEEEECC----CH------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 111 246899998632 11 12678999999999999987764
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-07 Score=99.01 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHH--h------ccCCCCcEEEEeeccCcccccCCCccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--N------VRDRSDMRWRVMDMTSMQVFMDETFDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~--~------~~~~~~v~f~~~D~~~l~~~~~~sfDv 138 (772)
.+.+||++|||+|..+..+.+.+ ..+|++||+++.|++.|++. + .-..++++++.+|+.+.-....+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45799999999999998888863 46899999999999999751 1 113568999999999842134578999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
|+.... +.... ....-....+++.+++.|+|||++++..-
T Consensus 230 IIvDl~-DP~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 230 IIIDFP-DPATE-LLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEcCC-Ccccc-chhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 997632 11100 00001136789999999999999988753
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=97.08 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=92.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC---CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg---~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+||.||+|.|.++..+....|..+|++||+++.+++.|++.+. .....+++++.+|+...+ .
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---~----------- 295 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E----------- 295 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---C-----------
Confidence 58999999999999999999999999999999999999998873 211247899999986532 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+++ .+-.. +.. ... -....++..++++|+|||.|.+=. .+...
T Consensus 296 --------------------~~~fDlIlsN--PPfh~-~~~-~~~-~ia~~l~~~a~~~LkpGG~L~iV~-nr~l~---- 345 (378)
T PRK15001 296 --------------------PFRFNAVLCN--PPFHQ-QHA-LTD-NVAWEMFHHARRCLKINGELYIVA-NRHLD---- 345 (378)
T ss_pred --------------------CCCEEEEEEC--cCccc-Ccc-CCH-HHHHHHHHHHHHhcccCCEEEEEE-ecCcC----
Confidence 2469999993 22110 100 011 124678999999999999887642 34333
Q ss_pred HHHHHHHhccceEEE
Q 004133 701 VISRMKMVFNHLFCL 715 (772)
Q Consensus 701 v~~~l~~vF~~v~~~ 715 (772)
....|++.|..+..+
T Consensus 346 y~~~L~~~fg~~~~v 360 (378)
T PRK15001 346 YFHKLKKIFGNCTTI 360 (378)
T ss_pred HHHHHHHHcCCceEE
Confidence 346677789877554
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-07 Score=93.79 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++.+|....+ ..+|++||++|.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~------------ 143 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP------------ 143 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc------------
Confidence 3457999999999999999988865 357999999999999999887322225799999998654211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...||+|+++.... .....+.+.|+|||.+++.+.
T Consensus 144 ---------------------~~~fD~Ii~~~~~~----------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 ---------------------LAPYDRIYVTAAGP----------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ---------------------cCCCCEEEEcCCcc----------------cccHHHHHhcCcCcEEEEEEc
Confidence 24699999964221 123457788999999999764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-07 Score=95.13 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+.+||.||+|.|.++..|.... .+|++||+++.+++.|++...-. ..++++++.+|..+.....
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~----------- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL----------- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----------
Confidence 345799999999999999998863 58999999999999999886311 2467999999998763221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
...||+|++.. .-..+..| ..+|+.+.+.|+|||++++-.+..+.
T Consensus 110 ---------------------~~~fD~V~~~~----vl~~~~~~------~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 110 ---------------------ETPVDLILFHA----VLEWVADP------KSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred ---------------------CCCCCEEEehh----HHHhhCCH------HHHHHHHHHHcCCCeEEEEEEECccH
Confidence 25799999732 11111112 57899999999999999876655543
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-06 Score=95.26 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++++....+ .+++|+++|+.++.....+.||+|+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 46899999999999999999987 479999999999999988775444 369999999987641134579999875
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-07 Score=92.80 Aligned_cols=110 Identities=12% Similarity=0.208 Sum_probs=78.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|||.|+..+++.. .+|+++|+++..+++|+.|---. .-.+........+ ..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-gv~i~y~~~~~ed----l~------------ 119 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-GVNIDYRQATVED----LA------------ 119 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-cccccchhhhHHH----HH------------
Confidence 45799999999999999999885 79999999999999999886210 0112222232222 22
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
..+.+||+|++ -+.-.-+.-| ..|++.|.+.++|||++++-.+.|+...
T Consensus 120 -----------------~~~~~FDvV~c----mEVlEHv~dp------~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 120 -----------------SAGGQFDVVTC----MEVLEHVPDP------ESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred -----------------hcCCCccEEEE----hhHHHccCCH------HHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 01368999986 2211112223 6799999999999999999888887554
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=93.00 Aligned_cols=132 Identities=18% Similarity=0.225 Sum_probs=103.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+..+||....|-|..+....+.. ..+|..||-||.|+++|+-+- ++ .+.+++++.||+.+++++..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~-------- 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFD-------- 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCC--------
Confidence 456799999999998877666553 238999999999999997654 33 24489999999999999976
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC----
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR---- 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~---- 693 (772)
+..||+||.|- +- -. -..++++++|++.+.+.|++||-+.--+-.+
T Consensus 203 -----------------------D~sfDaIiHDP--PR--fS---~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry 252 (287)
T COG2521 203 -----------------------DESFDAIIHDP--PR--FS---LAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY 252 (287)
T ss_pred -----------------------ccccceEeeCC--Cc--cc---hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc
Confidence 57899999954 21 11 2458999999999999999999988666433
Q ss_pred -ChhHHHHHHHHHHHh-ccce
Q 004133 694 -SQATKDMVISRMKMV-FNHL 712 (772)
Q Consensus 694 -~~~~~~~v~~~l~~v-F~~v 712 (772)
.......|.++|+++ |..|
T Consensus 253 rG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 253 RGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred ccCChhHHHHHHHHhcCceee
Confidence 345678899999988 5433
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.6e-07 Score=93.49 Aligned_cols=117 Identities=12% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.+|+|+|.++..+....|..+++++|+++.+++.|++.+....-++++++.+|+.+.+ .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~------------ 151 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---P------------ 151 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---c------------
Confidence 4468999999999999999999898899999999999999998863222247999999986632 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC--CCC------cCCcCC--------CcHHHHHHHHHccCCCcE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GMT------CPAADF--------VEGSFLLTVKDALSEQGL 685 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~--g~s------~Pp~~f--------~~~~fl~~~~~~L~~~Gi 685 (772)
..+||+|+.+.--..... .+. .|...+ .-..+++.+.+.|+|||.
T Consensus 152 -------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 152 -------------------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred -------------------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 257999998531100000 000 000000 114788999999999999
Q ss_pred EEEEecC
Q 004133 686 FIVNLVS 692 (772)
Q Consensus 686 lv~Nl~~ 692 (772)
+++....
T Consensus 213 ~~~~~~~ 219 (251)
T TIGR03534 213 LLLEIGY 219 (251)
T ss_pred EEEEECc
Confidence 9998743
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-07 Score=93.44 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=86.6
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCC
Q 004133 514 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKS 593 (772)
Q Consensus 514 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~r 593 (772)
++..+|..+++..++-. ....+||.||.|.|..+..|.+... +|.+||+++...+.|++.+.--.-.+
T Consensus 54 tis~P~~vA~m~~~L~~----------~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 54 TISAPHMVARMLQLLEL----------KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred eecCcHHHHHHHHHhCC----------CCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 56667777766543321 4568999999999999999999874 89999999999999999882111234
Q ss_pred eEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHH
Q 004133 594 LKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL 673 (772)
Q Consensus 594 l~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl 673 (772)
+.|+++||..-... ...||.|++-+-... .|..|
T Consensus 122 V~v~~gDG~~G~~~---------------------------------~aPyD~I~Vtaaa~~-------vP~~L------ 155 (209)
T COG2518 122 VTVRHGDGSKGWPE---------------------------------EAPYDRIIVTAAAPE-------VPEAL------ 155 (209)
T ss_pred eEEEECCcccCCCC---------------------------------CCCcCEEEEeeccCC-------CCHHH------
Confidence 99999999775333 256999999664432 24433
Q ss_pred HHHHHccCCCcEEEEEec
Q 004133 674 LTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 674 ~~~~~~L~~~Gilv~Nl~ 691 (772)
.+.|++||.+++-+-
T Consensus 156 ---l~QL~~gGrlv~PvG 170 (209)
T COG2518 156 ---LDQLKPGGRLVIPVG 170 (209)
T ss_pred ---HHhcccCCEEEEEEc
Confidence 345999999998775
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-07 Score=92.88 Aligned_cols=107 Identities=23% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe-----------------------
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM----------------------- 123 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~----------------------- 123 (772)
.+..+|||||-+|.++..+++. |...|.|+||.+..|+.|++... ....+++.+.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r-~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR-FPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc-ccccccccccCCCcccccccccccccccccccc
Confidence 4579999999999999999997 77789999999999999987652 2212222111
Q ss_pred ---------------------eccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 124 ---------------------DMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 124 ---------------------D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+.+ +....||+|+|-.+--|+.- ..++.-+..+|+.|.++|.|||++++--
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~---~~~~~fDiIlcLSiTkWIHL-NwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLD---MIQPEFDIILCLSITKWIHL-NWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccCCcchhcccccEEEecchhhh---hccccccEEEEEEeeeeEec-ccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 1221 34578999998665444332 1122338999999999999999999863
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=92.50 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=76.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.||+|+|.++..+.+..+ ..+|++||++|.+++.|++.+....-++++++.+|+.....
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-------------- 141 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-------------- 141 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------------
Confidence 457899999999999998888764 46999999999999999998732223579999999865311
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....||+|+++.... +..+.+.+.|+|||.+++.+
T Consensus 142 -------------------~~~~fD~I~~~~~~~----------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 -------------------ENAPYDRIYVTAAGP----------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred -------------------cCCCcCEEEECCCcc----------------cchHHHHHhhCCCcEEEEEE
Confidence 125699999965322 11235566899999999976
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-07 Score=98.78 Aligned_cols=108 Identities=17% Similarity=0.220 Sum_probs=82.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.||+|+|.+...|... +.+|++||+++.+++.|++++... ...+++++.+|+.++-..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------- 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------- 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------------
Confidence 3458999999999998888763 468999999999999999987542 235799999998665211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..+||+|+. .+...-+..| ..||+.+++.|+|||.+++..+.+.
T Consensus 196 --------------------~~~FD~Vi~----~~vLeHv~d~------~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 --------------------GRKFDAVLS----LEVIEHVANP------AEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred --------------------cCCCCEEEE----hhHHHhcCCH------HHHHHHHHHHcCCCcEEEEEECCcC
Confidence 357999986 1111111112 6899999999999999999887665
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=95.96 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=99.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+.+|.||+|.|.....++...|...+.+||+++.+++.|.+......-++++++.+|+..++...+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~----------- 189 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP----------- 189 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC-----------
Confidence 345689999999999999999999999999999999999999877633222569999999998765443
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
+..+|.|++- -+|+... .+...++...|++.+++.|+|||.+.+.. .+..+...
T Consensus 190 --------------------~~s~D~I~ln--FPdPW~K--krHRRlv~~~fL~e~~RvLkpGG~l~l~T--D~~~y~~~ 243 (390)
T PRK14121 190 --------------------SNSVEKIFVH--FPVPWDK--KPHRRVISEDFLNEALRVLKPGGTLELRT--DSELYFEF 243 (390)
T ss_pred --------------------CCceeEEEEe--CCCCccc--cchhhccHHHHHHHHHHHcCCCcEEEEEE--ECHHHHHH
Confidence 3679999983 3443211 12345778999999999999999998754 55566565
Q ss_pred HHHHHHHh
Q 004133 701 VISRMKMV 708 (772)
Q Consensus 701 v~~~l~~v 708 (772)
+++.+.+.
T Consensus 244 ~~e~~~~~ 251 (390)
T PRK14121 244 SLELFLKL 251 (390)
T ss_pred HHHHHHhC
Confidence 56665544
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=93.22 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=81.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCC---CCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~---~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.||+|+|.++..|.+.+ |..+|++||+++.|++.|++..... ..++++++.+|+.+. .
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p------- 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL----P------- 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC----C-------
Confidence 345789999999999999888775 5579999999999999998765321 135799999997543 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..+..||+|++-.-- ..+. --..+|+++.+.|+|||.|++--+...
T Consensus 141 ----------------------~~~~sfD~V~~~~~l----~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 141 ----------------------FDDCYFDAITMGYGL----RNVV------DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ----------------------CCCCCEeEEEEeccc----ccCC------CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 123679999872211 1111 127899999999999999887655543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=6e-07 Score=94.56 Aligned_cols=102 Identities=11% Similarity=0.169 Sum_probs=77.5
Q ss_pred CCCCeEEEEcccccHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHE--CMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~--~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|+|.+...|.. ..|..++++||++|.|++.|++.+.- ....+++++.+|..++ .
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~----~-------- 122 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A-------- 122 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC----C--------
Confidence 3457899999999998887877 35788999999999999999998732 2245899999997553 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC----cHHHHHHHHHccCCCcEEEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~----~~~fl~~~~~~L~~~Gilv~N 689 (772)
...+|+|++-. .-+++ -..+++.+.+.|+|||.|++-
T Consensus 123 -----------------------~~~~D~vv~~~------------~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 -----------------------IENASMVVLNF------------TLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -----------------------CCCCCEEehhh------------HHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 13488877521 11122 257999999999999999874
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-07 Score=97.13 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..|||+|||+|.++..-++.|.++|+++|.|.-+ +.|.+....+.. -++++.+.+.++. +|-++.|+|++-++-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhhh
Confidence 578999999999999999999999999999999966 677666654433 4899999999997 888999999998887
Q ss_pred cccccCccchHHHHHHHHHHH----hccccCeEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVK----RLLKSGGKFV 176 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~----rvLkpGG~~i 176 (772)
.++.- +.+|..+. +.|+|||.++
T Consensus 138 y~Ll~--------EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLY--------ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHH--------hhhhhhhhhhhhhccCCCceEc
Confidence 77643 45665554 8999999875
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=94.07 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=98.7
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+||.+|+|+|+++..+...+|..+|++||+++.++++|++..... ..++++++.+|..+.+ .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~------------- 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---A------------- 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---c-------------
Confidence 6899999999999999999999889999999999999999886321 2357999999976532 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CC-----CCcCCcCC--------CcHHHHHHHHHccCCCcEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SG-----MTCPAADF--------VEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~--~g-----~s~Pp~~f--------~~~~fl~~~~~~L~~~Gilv 687 (772)
..+||+|+.+----... .. ...|...+ .-..++..+.+.|+|||+++
T Consensus 180 ------------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 180 ------------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred ------------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 13699999852100000 00 01122222 23568888999999999999
Q ss_pred EEecCCChhHHHHHHHHHHH--hccceEEEeecCCceEEEEEe
Q 004133 688 VNLVSRSQATKDMVISRMKM--VFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~--vF~~v~~~~~~~~~N~vl~a~ 728 (772)
+.+...... .+.+.+.. -|..+..++--.+..+++++.
T Consensus 242 ~e~g~~q~~---~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 242 CEIGNWQQK---SLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred EEECccHHH---HHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 988543222 33333442 355555544344566777764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.1e-07 Score=91.48 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCchhH----HHHHHc-----C-CCeEEEEeCCHHHHHHHHHH-----------------h--ccCC---
Q 004133 68 PPPQILVPGCGNSRLS----EHLYDA-----G-FHGITNVDFSKVVISDMLRR-----------------N--VRDR--- 115 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls----~~La~~-----g-~~~V~gvDiS~~~I~~a~~~-----------------~--~~~~--- 115 (772)
+..+|+..||++|.-. ..+.+. + .-+|+|+|+|+.+|+.|++- + ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999644 333341 2 12699999999999999742 1 0001
Q ss_pred -------CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 116 -------SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 116 -------~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..++|.+.|+.+.+ .+.+.||+|+|.++|-++..+. ..++++.+++.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-~~~~~fD~I~CRNVlIYF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-PPFGRFDLIFCRNVLIYFDPET-----QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS-HHH-----HHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCC-cccCCccEEEecCEEEEeCHHH-----HHHHHHHHHHHcCCCCEEEEec
Confidence 36899999999943 4678999999999999996543 7899999999999999998864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7e-08 Score=96.71 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
....++|+|||-|.+...|...|..+++-+|.|-.|++.++.. ......+.+.++|-+.++ |.++++|+|++...+||
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHW 149 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEEEEEecchhccc-ccccchhhhhhhhhhhh
Confidence 4568999999999999999999888899999999999988533 233345788999999999 99999999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
..+ +...+..++..|||+|.|+..-++.+...+
T Consensus 150 ~Nd-------LPg~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 150 TND-------LPGSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred hcc-------CchHHHHHHHhcCCCccchhHHhccccHHH
Confidence 876 567889999999999999999888776543
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-06 Score=88.41 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=95.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.+|+|.|.++..|....+..+|.+||+++.|++.+.+...- .+++.++.+|+........
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~~~----------- 137 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERYAH----------- 137 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchhhh-----------
Confidence 345689999999999999999988756899999999998866555421 2568889999753100000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC------
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~------ 694 (772)
-...||+|++|+..++ ....+++.+++.|+|||.|++.+..+.
T Consensus 138 -------------------l~~~~D~i~~d~~~p~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~ 186 (226)
T PRK04266 138 -------------------VVEKVDVIYQDVAQPN------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD 186 (226)
T ss_pred -------------------ccccCCEEEECCCChh------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCC
Confidence 0135999998754221 014468999999999999999654322
Q ss_pred -hhHHHHHHHHHHHh-ccceEEEeecC--CceEEEEE
Q 004133 695 -QATKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFG 727 (772)
Q Consensus 695 -~~~~~~v~~~l~~v-F~~v~~~~~~~--~~N~vl~a 727 (772)
....+..++.+.+. |..+....... ..+..+++
T Consensus 187 ~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 187 PKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEE
Confidence 12234456777665 77666555432 23444444
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=99.09 Aligned_cols=133 Identities=14% Similarity=0.198 Sum_probs=97.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|+|.|..+..+.... +..+|++||+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~-------- 318 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKFA-------- 318 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccchhc--------
Confidence 34689999999999999888876 5679999999999999999876 54 249999999977632221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC-CcCCcC-C------------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAAD-F------------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~-s~Pp~~-f------------~~~~fl~~~~~~L~~~ 683 (772)
..||+|++|...+. .|+ ..-|.. + +..++|+.+.+.|+||
T Consensus 319 ------------------------~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 319 ------------------------EKFDKILVDAPCSG--LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred ------------------------ccCCEEEEcCCCCC--CeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999974321 121 111111 1 2357899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
|.+++...+-..+..+.++..+.+..+.
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~~ 400 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHPE 400 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCCC
Confidence 9999988777666666677766555443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=88.51 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
++.+|||+|||+|.++..++.++..+|+++|+++.+++.+++++...+ .+++++++|+.+.-....++||+|+....+.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 467999999999999987666666789999999999999987764433 3689999999763202345799999866632
Q ss_pred ccccCccchHHHHHHHHHHHh--ccccCeEEEEEEcCc
Q 004133 147 ALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLAE 182 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~r--vLkpGG~~ii~~~~~ 182 (772)
.- ....+++.+.. +|+|+|.+++....+
T Consensus 133 ~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 133 KG--------LLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CC--------hHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 11 13455565554 489999888776543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=89.73 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
...+||.||+|.|.++..+.+..+ ..+|++||++|.+++.|++.+.-. ..++++++.+|+.+.+..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------------ 139 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------------ 139 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------------
Confidence 346899999999999988888764 458999999999999999877321 235799999998764221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...||+|+++.... .+...+.+.|+|||.|++.+.
T Consensus 140 ---------------------~~~fD~Ii~~~~~~----------------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 ---------------------HAPFDAIIVTAAAS----------------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ---------------------CCCccEEEEccCcc----------------hhhHHHHHhcCcCcEEEEEEc
Confidence 24699999964321 122456788999999998763
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=94.04 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhH----HHHHHc-C----CCeEEEEe
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS----EHLYDA-G----FHGITNVD 98 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls----~~La~~-g----~~~V~gvD 98 (772)
.+.|+.....-- -..-.+|.+...+.. +...+... ....+|...||+||.-. ..+.+. + .-+|+|+|
T Consensus 79 ~~e~~~li~~lt-ineT~FFRd~~~f~~-L~~~~~~~--~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atD 154 (287)
T PRK10611 79 SAEWQAFINALT-TNLTAFFREAHHFPI-LAEHARRR--SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASD 154 (287)
T ss_pred HHHHHHHHHHhh-CCCCCccCCcHHHHH-HHHHHHhc--CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEE
Confidence 456666554431 122224444433333 33333221 23479999999999644 333332 1 12599999
Q ss_pred CCHHHHHHHHHHh------------------cc--------------CCCCcEEEEeeccCccccc-CCCccEEEecccc
Q 004133 99 FSKVVISDMLRRN------------------VR--------------DRSDMRWRVMDMTSMQVFM-DETFDVILDKGGL 145 (772)
Q Consensus 99 iS~~~I~~a~~~~------------------~~--------------~~~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l 145 (772)
+|+.+|+.|++-. .. -...++|.+.|+.+.+ ++ .+.||+|++.+++
T Consensus 155 Is~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~-~~~~~~fD~I~cRNvl 233 (287)
T PRK10611 155 IDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQ-WAVPGPFDAIFCRNVM 233 (287)
T ss_pred CCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCC-CccCCCcceeeHhhHH
Confidence 9999999997531 00 0135789999998865 43 6889999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.|+..+. ..++++.+++.|+|||++++-.
T Consensus 234 iyF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 234 IYFDKTT-----QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred hcCCHHH-----HHHHHHHHHHHhCCCcEEEEeC
Confidence 9885543 7899999999999999876653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-06 Score=88.36 Aligned_cols=105 Identities=12% Similarity=0.221 Sum_probs=77.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.+...+.+.+ |+.++++||+++.|++.|++.+.- ....+++++.+|..++ .
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----E--------- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----C---------
Confidence 45689999999999988888764 678999999999999999988632 2345799999998764 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
...+|+|++.. . ..- +++.. -..+|+.+.+.|+|||.|++-
T Consensus 120 ----------------------~~~~d~v~~~~--~--l~~--~~~~~--~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 120 ----------------------IKNASMVILNF--T--LQF--LPPED--RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ----------------------CCCCCEEeeec--c--hhh--CCHHH--HHHHHHHHHHhcCCCeEEEEe
Confidence 13478776521 0 000 01111 257999999999999999976
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.5e-07 Score=91.36 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeeccCc-c-cccCCCccEEEeccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSM-Q-VFMDETFDVILDKGG 144 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-~~~~v~f~~~D~~~l-~-~~~~~sfDvVi~~~~ 144 (772)
...+||||||.|.+...++.. +-.+++|+|++...+..+.++... ...|+.++++|+..+ . .++++++|.|+....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999999999987 556899999999999999877754 446899999999883 2 245689998876442
Q ss_pred ccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 145 LDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 145 l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
=-+...... ..-.-..+++.++++|+|||.+.+.|=..+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~ 139 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA 139 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 222111000 00014689999999999999999988665443
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.8e-06 Score=92.81 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=98.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..++|.||+|+|.++..+....|..+|++||+||.++++|++..... ..+++++.+|..+.. ..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~gDl~e~~--l~------------- 315 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-GARVEFAHGSWFDTD--MP------------- 315 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEcchhccc--cc-------------
Confidence 35899999999999999998888899999999999999999987422 237999999975431 00
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCC-CCCCCCCC------cCCcCCC--------cHHHHHHHHHccCCCcEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMT------CPAADFV--------EGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~-~d~~~g~s------~Pp~~f~--------~~~fl~~~~~~L~~~Gilv 687 (772)
...+||+|+.+--- +.....+. -|...+. -..+++.+.+.|+|+|.++
T Consensus 316 -----------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 316 -----------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred -----------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 02469999985411 00000000 1111221 2467777788999999998
Q ss_pred EEecCCChhHHHHHHHHHHHh-ccceEEEeecCCceEEEEEec
Q 004133 688 VNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~ 729 (772)
+-+.. ...+.+.+.+.+. |..+...+--.+..+++++..
T Consensus 379 lEiG~---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 379 LEHGF---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred EEECc---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 75532 2234455555543 655555554445677777653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.8e-06 Score=100.06 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=101.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+.+||.||+|+|+++..+...+|..+|++||++|.++++|++.. ++ +++++++.+|..+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~~~~------------ 203 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFENIE------------ 203 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhhhCc------------
Confidence 346899999999999999998889999999999999999999886 43 4689999999765421
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC------CcCCcCCC--------cHHHHHHHHHccCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM------TCPAADFV--------EGSFLLTVKDALSE 682 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~--~g~------s~Pp~~f~--------~~~fl~~~~~~L~~ 682 (772)
..+||+|+.+.---... ..+ .-|..+++ -..+++.+.+.|+|
T Consensus 204 ----------------------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~ 261 (506)
T PRK01544 204 ----------------------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP 261 (506)
T ss_pred ----------------------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC
Confidence 24699999843100000 000 01222222 24467788899999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHh-ccceEEEeecCCceEEEEEecCC
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
||.+++-+-... .+.+.+.+.+. |..+..++--.+..+++++....
T Consensus 262 gG~l~lEig~~q---~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~~ 308 (506)
T PRK01544 262 NGKIILEIGFKQ---EEAVTQIFLDHGYNIESVYKDLQGHSRVILISPIN 308 (506)
T ss_pred CCEEEEEECCch---HHHHHHHHHhcCCCceEEEecCCCCceEEEecccc
Confidence 999998653222 23344444443 55455555445667888887765
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.5e-07 Score=109.49 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-----------------CCcEEEEeeccCccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-----------------SDMRWRVMDMTSMQV 130 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-----------------~~v~f~~~D~~~l~~ 130 (772)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++..+. .+++|+++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~- 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC- 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-
Confidence 4689999999999999998873 3579999999999999987764321 25899999998743
Q ss_pred cc-CCCccEEEecccc----------------------------ccccc---CccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 131 FM-DETFDVILDKGGL----------------------------DALME---PELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 131 ~~-~~sfDvVi~~~~l----------------------------~~l~~---~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
-. ...||+|+++-.. .++.. ++++...+++++.++.++|+|||.+++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 2369999975441 01111 1334455899999999999999998875
Q ss_pred E-cCchhhhh-ccccc
Q 004133 179 T-LAESHVLG-LLFPK 192 (772)
Q Consensus 179 ~-~~~~~~~~-~l~~~ 192 (772)
. +.|..... .++..
T Consensus 278 iG~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 278 MGGRPGQAVCERLFER 293 (1082)
T ss_pred ECccHHHHHHHHHHHH
Confidence 4 34444333 35543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-06 Score=87.28 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=97.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH--HHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~--l~~~~~~~~~~~~~ 618 (772)
...+||.||+|+|..+..+.+..+ ..+|++||++|. ...+.++++.+|..+. +.+...
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~-------- 111 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLE-------- 111 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHH--------
Confidence 346899999999999998888764 469999999992 1124589999997663 222210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-----CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
......||+|+.|....- .|. |..+. +...+|+.+.+.|+|||.|++-++..
T Consensus 112 -------------------~~~~~~~D~V~S~~~~~~--~g~--~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 112 -------------------RVGDSKVQVVMSDMAPNM--SGT--PAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -------------------HhCCCCCCEEecCCCCcc--CCC--hHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 001367999999763221 111 11110 12578999999999999999977544
Q ss_pred ChhHHHHHHHHHHHhccceEEEeec----CCceEEEEEec
Q 004133 694 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 729 (772)
Q Consensus 694 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~vl~a~~ 729 (772)
+ . ...++..++..|..+..++.. +.....++|.+
T Consensus 169 ~-~-~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~ 206 (209)
T PRK11188 169 E-G-FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 206 (209)
T ss_pred c-C-HHHHHHHHHhCceEEEEECCccccccCceeEEEeec
Confidence 2 2 244688999999999988743 23445566653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-07 Score=79.49 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=71.0
Q ss_pred EEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccc
Q 004133 547 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 626 (772)
Q Consensus 547 LviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~ 626 (772)
|.||+|.|..+..|... +..+++++|+++.+++.|++.+. ..++.+..+|..++ .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~---~~~~~~~~~d~~~l----~----------------- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK---NEGVSFRQGDAEDL----P----------------- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT---TSTEEEEESBTTSS----S-----------------
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc---ccCchheeehHHhC----c-----------------
Confidence 78999999999999999 77899999999999999999885 35567888886554 1
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-CcHHHHHHHHHccCCCcEEEE
Q 004133 627 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 627 ~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..+..||+|+.-- . + ..+ --..+++.+++.|+|||.+++
T Consensus 56 ------------~~~~sfD~v~~~~--~-----~----~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 56 ------------FPDNSFDVVFSNS--V-----L----HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------------S-TT-EEEEEEES--H-----G----GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------ccccccccccccc--c-----e----eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 1247899998721 1 0 011 236799999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.3e-06 Score=80.60 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=95.5
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
.++..+...++. ..+..|||+|.|||-++..+..+|. .+++.+++|+..+....+++ +.++++.+|+.++.
T Consensus 35 ~lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~l~ 107 (194)
T COG3963 35 ILARKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFDLR 107 (194)
T ss_pred HHHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhhHH
Confidence 444555555554 5678999999999999999999874 56999999999998776654 67789999998875
Q ss_pred ----cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 130 ----VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 130 ----~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+.+..||.|++.--+-.++. ....++++++...|.+||.++..+|+
T Consensus 108 ~~l~e~~gq~~D~viS~lPll~~P~-----~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 108 TTLGEHKGQFFDSVISGLPLLNFPM-----HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHhhcCCCeeeeEEeccccccCcH-----HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 356788999998766655543 23679999999999999999999998
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=85.26 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=94.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
++.+||.+|+|.|.++..+....+ +|++||++|.+++.|++.+... ..+++++.+|..+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~---------------- 79 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV---------------- 79 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------------
Confidence 446899999999999998888765 8999999999999999987532 235788888865431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC-----------cCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-----------ADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp-----------~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+||+|+.+.--.........++ ..-.-..|++.+.+.|+|||.+++..
T Consensus 80 -------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 146999998531100000000000 00123678999999999999999876
Q ss_pred cCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEe
Q 004133 691 VSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 691 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~ 728 (772)
.+... ...++..+++.-=.+..+.-..-.++.+++-
T Consensus 141 ~~~~~--~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 141 SSLNG--EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred eccCC--hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 44332 2345666655432333333344456666654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=89.96 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=82.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++.++...+|..++++||+++.+++.|++.+. ++++++.+|..+..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~--------------- 93 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP--------------- 93 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC---------------
Confidence 34578999999999999999999998899999999999999999876 37889999875531
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|+....-. ... -...+|..+++.|+|||.+++..+..
T Consensus 94 ------------------~~~~~fD~vi~~~~l~----~~~------~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 94 ------------------LEDSSFDLIVSNLALQ----WCD------DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred ------------------CCCCceeEEEEhhhhh----hcc------CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 0135799999742111 000 12679999999999999999887544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=90.29 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=88.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
+.+||.+|+|.|.++..+....|..+|++||+||.+++.|++.... ..++++.+|..+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---~~~~~~~~D~~~~l~~~~------------- 150 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---AGGTVHEGDLYDALPTAL------------- 150 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCEEEEeechhhcchhc-------------
Confidence 4589999999999999999888888999999999999999998753 125789999877654321
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCC-CCCCCCCCcCCc--------CC--------CcHHHHHHHHHccCCCcE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAA--------DF--------VEGSFLLTVKDALSEQGL 685 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~-~d~~~g~s~Pp~--------~f--------~~~~fl~~~~~~L~~~Gi 685 (772)
..+||+|++|.-- +...... .+|. .+ +-..++..+.+.|+|+|.
T Consensus 151 ------------------~~~fDlVv~NPPy~~~~~~~~-~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 151 ------------------RGRVDILAANAPYVPTDAIAL-MPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred ------------------CCCEeEEEECCCCCCchhhhc-CCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 1469999997511 1000000 0111 11 135788888999999999
Q ss_pred EEEEecCCChhHHHHHHHHHHH
Q 004133 686 FIVNLVSRSQATKDMVISRMKM 707 (772)
Q Consensus 686 lv~Nl~~~~~~~~~~v~~~l~~ 707 (772)
+++-.... ....++..+++
T Consensus 212 l~l~~~~~---~~~~v~~~l~~ 230 (251)
T TIGR03704 212 LLVETSER---QAPLAVEAFAR 230 (251)
T ss_pred EEEEECcc---hHHHHHHHHHH
Confidence 99765322 23456666654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=89.55 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-C-CcEEEEeeccCcc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTSMQ 129 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~-~v~f~~~D~~~l~ 129 (772)
..++..++.. .|+++|||.|.|+|.++..|+.. +..+|+..|+-+...+.|++++.... . ++++...|+.+..
T Consensus 83 ~~~I~~~~gi---~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 83 AGYIVARLGI---SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHHHcCC---CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 4456666665 79999999999999999999974 34689999999999999998886532 2 4899999999976
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
+++ .||+|+. |. ++| -++++.++++|||||.+++..-.-+++.+
T Consensus 160 -~~~-~vDav~L----Dm-p~P-------W~~le~~~~~Lkpgg~~~~y~P~veQv~k 203 (256)
T COG2519 160 -DEE-DVDAVFL----DL-PDP-------WNVLEHVSDALKPGGVVVVYSPTVEQVEK 203 (256)
T ss_pred -ccc-ccCEEEE----cC-CCh-------HHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence 444 8998873 32 222 47999999999999999998876666555
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-06 Score=97.62 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=98.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.+|.|.|+.+..+....+..+|+++|+++.+++.+++.+ |+. .++.++.+|+.......
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~~---------- 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQWA---------- 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccccccc----------
Confidence 446899999999999999999887679999999999999998876 552 23444556654321000
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC-CcCCcCC-------------CcHHHHHHHHHccCCCc
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAADF-------------VEGSFLLTVKDALSEQG 684 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~-s~Pp~~f-------------~~~~fl~~~~~~L~~~G 684 (772)
....||.|++|+-.+. .|+ .--|... +..++|..+.+.|+|||
T Consensus 306 ---------------------~~~~fD~VllDaPcSg--~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG 362 (426)
T TIGR00563 306 ---------------------ENEQFDRILLDAPCSA--TGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG 362 (426)
T ss_pred ---------------------cccccCEEEEcCCCCC--CcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1357999999985432 232 1112111 14689999999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhccce
Q 004133 685 LFIVNLVSRSQATKDMVISRMKMVFNHL 712 (772)
Q Consensus 685 ilv~Nl~~~~~~~~~~v~~~l~~vF~~v 712 (772)
.||+...+-+++..+.++..+-+-++..
T Consensus 363 ~lvystcs~~~~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 363 TLVYATCSVLPEENSEQIKAFLQEHPDF 390 (426)
T ss_pred EEEEEeCCCChhhCHHHHHHHHHhCCCC
Confidence 9999998888888888888887777653
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.9e-07 Score=103.40 Aligned_cols=110 Identities=19% Similarity=0.139 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHH--hc------cCCCCcEEEEeeccCcccccCCCccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRR--NV------RDRSDMRWRVMDMTSMQVFMDETFDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~--~~------~~~~~v~f~~~D~~~l~~~~~~sfDv 138 (772)
++.+|||+|||+|..+..+.+.+. .+|+++|+++.+++.+++. .. -..++++++++|+.+.-...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 467999999999999999988754 6899999999999999873 11 12468999999998742134579999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+....-...... ..-....+++.++++|||||++++..
T Consensus 377 Ii~D~~~~~~~~~--~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPAL--GKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcch--hccchHHHHHHHHHhcCCCeEEEEec
Confidence 9986432211100 00113568999999999999998864
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=89.77 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=85.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+++.+||.||+|+|-++..+.+..+..+|+++|+++.|+++|++...=..-..++++++||.+.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L---------------- 113 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL---------------- 113 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC----------------
Confidence 3678999999999999999999998889999999999999999998421112299999999764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
+.++..||++.+.- . -..+.- -+..|+.+.+.|+|||.+++.=.+.
T Consensus 114 -----------------Pf~D~sFD~vt~~f-g---lrnv~d------~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 114 -----------------PFPDNSFDAVTISF-G---LRNVTD------IDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred -----------------CCCCCccCEEEeee-h---hhcCCC------HHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 12368899998832 1 111111 2779999999999999888765444
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.9e-06 Score=95.47 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=96.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|.|.|..+..+....+..+|+++|+++.+++.+++.+.-. +-+++++.+|+.+......
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~~~~~~~~~------------ 310 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDARDPAQWWD------------ 310 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCcccchhhcc------------
Confidence 456899999999999999998887679999999999999999887321 1236899999876422111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCCCcEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~~Gilv 687 (772)
...||.|++|.-.+. .|.....++. ....+|..+.+.|+|||.++
T Consensus 311 -------------------~~~fD~Vl~D~Pcs~--~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 311 -------------------GQPFDRILLDAPCSA--TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred -------------------cCCCCEEEECCCCCc--ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 256999999884331 2221111111 12478999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhccc
Q 004133 688 VNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
+...+-.....+.++..+.+-.+.
T Consensus 370 ystcs~~~~Ene~~v~~~l~~~~~ 393 (427)
T PRK10901 370 YATCSILPEENEQQIKAFLARHPD 393 (427)
T ss_pred EEeCCCChhhCHHHHHHHHHhCCC
Confidence 988766666555666665554443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=90.76 Aligned_cols=95 Identities=24% Similarity=0.365 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
...++||||+|.|..+..++.. |++|++.+.|..|....+++. |.+.|..+.. -.+.+||+|.+-++||-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w~-~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKG--------FTVLDIDDWQ-QTDFKFDVISCLNVLDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCC--------CeEEehhhhh-ccCCceEEEeehhhhhc
Confidence 4578999999999999999775 778999999998866554321 3445555555 34568999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...| ..+|++|++.|+|+|++++..
T Consensus 164 c~~P-------~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 164 CDRP-------LTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred cCCH-------HHHHHHHHHHhCCCCEEEEEE
Confidence 8775 589999999999999998764
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=86.29 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=82.5
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC--CC--------eEEEEeCCHHHHHHHHHHhccCCC--CcE
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FH--------GITNVDFSKVVISDMLRRNVRDRS--DMR 119 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g--~~--------~V~gvDiS~~~I~~a~~~~~~~~~--~v~ 119 (772)
.+...+..+... .++..|||.-||+|.+..+.+..+ .. +++|+|+++.+++.+++++...+. .+.
T Consensus 15 ~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 15 TLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 455555555554 578899999999999998876652 22 288999999999999888754433 589
Q ss_pred EEEeeccCcccccCCCccEEEecccccccccC-ccchHHHHHHHHHHHhcccc
Q 004133 120 WRVMDMTSMQVFMDETFDVILDKGGLDALMEP-ELGHKLGNQYLSEVKRLLKS 171 (772)
Q Consensus 120 f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~-~~~~~~~~~~l~ei~rvLkp 171 (772)
+.+.|+++++ +.++++|+|+.+-....-... .+...++..+++++.++|++
T Consensus 92 ~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 92 FIQWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEE--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999 889999999987766543321 12245588999999999999
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-06 Score=96.62 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=99.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|.|.|..+.++....+ ..+|++||+++.+++.+++.+ |+ .+++++.+|+..+. .
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~---~-------- 315 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS---P-------- 315 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc---c--------
Confidence 346899999999999888887664 358999999999999999887 54 36899999987752 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC----C----------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD----F----------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~----f----------~~~~fl~~~~~~L~~~ 683 (772)
...||+|++|+-.+. .|+..-.++ + ....+|..+.+.|+||
T Consensus 316 -----------------------~~~fD~Vl~D~Pcsg--~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 316 -----------------------EEQPDAILLDAPCTG--TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred -----------------------CCCCCEEEEcCCCCC--cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999874331 222211111 1 1346899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
|++++...+-.++..+.++..+-+..+.
T Consensus 371 G~lvystcs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 371 GVLVYATCSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999999888888878888888776654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=91.86 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=68.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.|++.++++... .+++++++|+.+++ +
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~-~ 101 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVD-L 101 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCC-H
Confidence 444555555544 5678999999999999999999875 799999999999999876632 68999999999987 6
Q ss_pred cCCCccEEEeccc
Q 004133 132 MDETFDVILDKGG 144 (772)
Q Consensus 132 ~~~sfDvVi~~~~ 144 (772)
++-.+|.|+++-.
T Consensus 102 ~~~~~~~vv~NlP 114 (272)
T PRK00274 102 SELQPLKVVANLP 114 (272)
T ss_pred HHcCcceEEEeCC
Confidence 5433588887654
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-06 Score=91.60 Aligned_cols=141 Identities=14% Similarity=0.165 Sum_probs=94.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.||+|.|.++..+....|..+|++||+++.+++.|++.+... .-..+++.+|+...+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l~~~~~~~D~~~~~----------------- 258 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GLEGEVFASNVFSDI----------------- 258 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEccccccc-----------------
Confidence 35799999999999999999999889999999999999999887431 123467777775421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHH
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 702 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 702 (772)
..+||+|+++- +-. .|+. ...-....|+..+.+.|+|||.|++= ..+...+ .
T Consensus 259 ------------------~~~fDlIvsNP--PFH-~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iV-an~~l~y-~--- 310 (342)
T PRK09489 259 ------------------KGRFDMIISNP--PFH-DGIQ--TSLDAAQTLIRGAVRHLNSGGELRIV-ANAFLPY-P--- 310 (342)
T ss_pred ------------------CCCccEEEECC--Ccc-CCcc--ccHHHHHHHHHHHHHhcCcCCEEEEE-EeCCCCh-H---
Confidence 25699999832 110 0110 00012378999999999999988642 2233322 2
Q ss_pred HHHHHhccceEEEeecCCceEEEEEecC
Q 004133 703 SRMKMVFNHLFCLQLEEDVNLVLFGLSS 730 (772)
Q Consensus 703 ~~l~~vF~~v~~~~~~~~~N~vl~a~~~ 730 (772)
..+.+.|.++-.+. .+..=.|+-|.+.
T Consensus 311 ~~l~~~Fg~~~~la-~~~~f~v~~a~~~ 337 (342)
T PRK09489 311 DLLDETFGSHEVLA-QTGRFKVYRAIMT 337 (342)
T ss_pred HHHHHHcCCeEEEE-eCCCEEEEEEEcc
Confidence 34456798776554 3333456666543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-06 Score=97.25 Aligned_cols=126 Identities=9% Similarity=0.093 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc-cc--ccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-QV--FMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l-~~--~~~~sfDvVi~~ 142 (772)
.++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++++...+ .+++|+++|+.+. +. +.+++||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456899999999999999999875 479999999999999988765433 4799999999763 11 335679999853
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEc
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 204 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~ 204 (772)
..-..+ ...+++.+.+ ++|++.+++ +.....+.+.+......+|.+.....
T Consensus 370 PPr~G~---------~~~~l~~l~~-l~~~~ivyv-sc~p~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 370 PPRKGC---------AAEVLRTIIE-LKPERIVYV-SCNPATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred cCCCCC---------CHHHHHHHHh-cCCCEEEEE-cCCHHHHHHHHHHHHHCCeeEEEEEE
Confidence 321111 2456666554 788875544 44433333332222233565554443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=89.26 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=92.0
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc-c-cc
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ-V-FM 132 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~-~-~~ 132 (772)
+..+++. .....+||||||.|.+...+|.. +-.+++||++....+..|.++....+. |+.+++.|+..+- . ++
T Consensus 40 ~~~~f~~---~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 40 WSALFGN---NNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred HHHHhCC---CCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC
Confidence 4455543 22358999999999999999998 456899999999999999998887777 9999999998743 2 34
Q ss_pred CCCccEEEecccccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 133 DETFDVILDKGGLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++.|-|+....=-|....-. ..-....+++.+.++|+|||.+.+.|=....
T Consensus 117 ~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 117 DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 559998886543222211000 0001568999999999999999998855443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.3e-06 Score=93.82 Aligned_cols=110 Identities=11% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-C-CCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-D-KSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~-~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+||.+|.|+|++...+... +..+|++||+++.+++.|++++.+.. + ++++++.+|+.+++++...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------- 289 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh----------
Confidence 478999999999986554432 34489999999999999999985431 2 4799999999999977541
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-----cHHHHHHHHHccCCCcEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-----~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+.+||+||+|.-.-... ...+. -.+++..+.++|+|||+|+.
T Consensus 290 -------------------~~~~fDlVilDPP~f~~~------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 290 -------------------RGEKFDVIVMDPPKFVEN------KSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred -------------------cCCCCCEEEECCCCCCCC------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 135799999964321110 00111 23456678899999999886
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=90.80 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=80.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|...+ ..+|++||++|.+++.|++.+.. .++++++.+|..+. .
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~----~----------- 112 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK----D----------- 112 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC----C-----------
Confidence 445789999999999998887765 45999999999999999998764 46899999987531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.....||+|+. ++... + +... -..+|+.+.+.|+|||.|++.-+.
T Consensus 113 ------------------~~~~~FD~V~s~~~l~h-----~--~~~d--~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 ------------------FPENTFDMIYSRDAILH-----L--SYAD--KKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred ------------------CCCCCeEEEEEhhhHHh-----C--CHHH--HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11367999997 32111 0 1011 267999999999999999987554
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.38 E-value=7e-06 Score=82.76 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=92.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH--HHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~--l~~~~~~~~~~~~ 617 (772)
....+||+||+|+|.++..+...+ +..+|++||++|.+ .. ++++++.+|..+. +.....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~---~~i~~~~~d~~~~~~~~~l~~------- 92 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI---ENVDFIRGDFTDEEVLNKIRE------- 92 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC---CCceEEEeeCCChhHHHHHHH-------
Confidence 345789999999999998888776 45689999999965 22 4578888886532 111110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC----CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....+||+|++|.... ..|..+. ... .-..++..+.+.|+|||.+++.....
T Consensus 93 --------------------~~~~~~~D~V~~~~~~~--~~g~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 93 --------------------RVGDDKVDVVMSDAAPN--ISGYWDI-DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred --------------------HhCCCCccEEEcCCCCC--CCCCccc-cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 00135799999975211 1111000 001 12578999999999999999976433
Q ss_pred ChhHHHHHHHHHHHhccceEEEee--cCCce--EEEEEe
Q 004133 694 SQATKDMVISRMKMVFNHLFCLQL--EEDVN--LVLFGL 728 (772)
Q Consensus 694 ~~~~~~~v~~~l~~vF~~v~~~~~--~~~~N--~vl~a~ 728 (772)
.....++..++..|..+..++. ..+.| .+++|.
T Consensus 150 --~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 150 --EEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred --ccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 2234578888888977666653 33333 456664
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=79.02 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=69.6
Q ss_pred EEEEcccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 546 AVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 546 vLviGlG~G~l~~~L~~~~---p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
||.||+|+|...+.+...+ |..++++||+|+.+++.|++++.- ...+++++++|..++- ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~~~~~~~~D~~~l~-~~-------------- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGPKVRFVQADARDLP-FS-------------- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTTTSEEEESCTTCHH-HH--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCCceEEEECCHhHCc-cc--------------
Confidence 6899999999999999887 447999999999999999999832 2237999999997752 21
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC---cHHHHHHHHHccCCCc
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQG 684 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~---~~~fl~~~~~~L~~~G 684 (772)
..+||+|++ . +. ....|- -..+|+.+.++|+|||
T Consensus 65 ------------------~~~~D~v~~----~----~~--~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 ------------------DGKFDLVVC----S----GL--SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ------------------SSSEEEEEE---------TT--GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ------------------CCCeeEEEE----c----CC--ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 358999998 1 00 012222 2678999999999998
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-06 Score=94.34 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=80.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+.+||.||+|.|.++..|.+.+ ..+|++||+++.+++.|++...-. ..++++++++|+.+. .
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~----~---------- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ----P---------- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC----C----------
Confidence 345789999999999999999876 569999999999999998875211 246799999998653 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+..||+|+.-. +. .-+ | -...+++.+.+.|+|||.|++-.+
T Consensus 182 -------------------~~~~~FD~V~s~~-~~---~h~--~----d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 -------------------FEDGQFDLVWSME-SG---EHM--P----DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -------------------CCCCCccEEEECC-ch---hcc--C----CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1136799998711 11 111 1 126899999999999999998654
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-06 Score=89.80 Aligned_cols=118 Identities=13% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|+|+|.++..+... +..+|++||+||.+++.|++.+... -..++.+..+|... ..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----~~----------- 222 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----PI----------- 222 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----cc-----------
Confidence 3478999999999999888765 4458999999999999999987432 13456666665211 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+.++... .-..++..+.+.|+|||.|++--+.. .....
T Consensus 223 --------------------~~~fDlVvan~~~~-------------~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~ 267 (288)
T TIGR00406 223 --------------------EGKADVIVANILAE-------------VIKELYPQFSRLVKPGGWLILSGILE--TQAQS 267 (288)
T ss_pred --------------------CCCceEEEEecCHH-------------HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHH
Confidence 25799999854211 11578999999999999999865433 23355
Q ss_pred HHHHHHHhcc
Q 004133 701 VISRMKMVFN 710 (772)
Q Consensus 701 v~~~l~~vF~ 710 (772)
+.+.+++.|.
T Consensus 268 v~~~~~~~f~ 277 (288)
T TIGR00406 268 VCDAYEQGFT 277 (288)
T ss_pred HHHHHHccCc
Confidence 6777776554
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-06 Score=84.80 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccC-c--ccccCCCccE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTS-M--QVFMDETFDV 138 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~-l--~~~~~~sfDv 138 (772)
..+.+|||+|||+|..+..++.. +..+|+..|..+ .++.++.+...+. .++.+...|..+ . .......||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46789999999999999999988 667899999999 8888877765433 578888888765 1 1123468999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|++..+++.-.. ...+++.+.++|+++|.+++..
T Consensus 123 IlasDv~Y~~~~-------~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 123 ILASDVLYDEEL-------FEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEES--S-GGG-------HHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEecccchHHH-------HHHHHHHHHHHhCCCCEEEEEe
Confidence 999998875322 7889999999999999855543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-06 Score=90.85 Aligned_cols=87 Identities=9% Similarity=0.162 Sum_probs=70.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
.+...+...++. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... ..+++++++|+.+++ +
T Consensus 16 ~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~-~ 89 (258)
T PRK14896 16 RVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVD-L 89 (258)
T ss_pred HHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCC-c
Confidence 444555555543 5678999999999999999999854 799999999999999877643 468999999999887 5
Q ss_pred cCCCccEEEeccccc
Q 004133 132 MDETFDVILDKGGLD 146 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~ 146 (772)
+ .||.|+++-..+
T Consensus 90 ~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 P--EFNKVVSNLPYQ 102 (258)
T ss_pred h--hceEEEEcCCcc
Confidence 4 489999876654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.7e-08 Score=87.06 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=57.8
Q ss_pred EEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccc
Q 004133 547 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 626 (772)
Q Consensus 547 LviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~ 626 (772)
|.||+|.|.+...|...+|..++++||++|.+++.|++.+.-...........+-.+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD------------------ 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc------------------
Confidence 68999999999999999999999999999999988888874322222222222111111110
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEE
Q 004133 627 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 686 (772)
Q Consensus 627 ~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gil 686 (772)
...+||+|+.= ..-.-+. --..+|+.+++.|+|||+|
T Consensus 63 -------------~~~~fD~V~~~----~vl~~l~------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 -------------PPESFDLVVAS----NVLHHLE------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------------C----SEEEEE-----TTS--S-------HHHHHHHHTTT-TSS-EE
T ss_pred -------------cccccceehhh----hhHhhhh------hHHHHHHHHHHHcCCCCCC
Confidence 12589999861 1111111 2268999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7e-07 Score=93.13 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=71.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+.+||.+|+|+|.++..|.+.. |..+|++||+++.|+++|++...-....+++++++|+.+. .
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l----p---------- 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL----P---------- 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----------------
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh----c----------
Confidence 456799999999999999888775 5679999999999999999886321224899999998664 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-cHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+..||+|.+-- |+. .+- -...|+.+.+.|+|||.+++-=
T Consensus 112 -------------------~~d~sfD~v~~~f-------glr----n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 112 -------------------FPDNSFDAVTCSF-------GLR----NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -------------------S-TT-EEEEEEES--------GG----G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCceeEEEHHh-------hHH----hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 1247799999722 221 111 3679999999999999887533
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.9e-06 Score=91.33 Aligned_cols=125 Identities=9% Similarity=0.099 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
++.+|||+|||+|.++..++..+ ..|+|+|+++.+++.|++++...+ .+++|.++|+.+...-...+||+|+..-.-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999876 479999999999999987764443 3789999999774301224699988654321
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
.+ ...+++.+.+ ++|++.+++.. ....+.+.+... .+|.+......+
T Consensus 312 G~---------~~~~l~~l~~-~~p~~ivyvsc-~p~TlaRDl~~L--~gy~l~~~~~~D 358 (374)
T TIGR02085 312 GI---------GKELCDYLSQ-MAPKFILYSSC-NAQTMAKDIAEL--SGYQIERVQLFD 358 (374)
T ss_pred CC---------cHHHHHHHHh-cCCCeEEEEEe-CHHHHHHHHHHh--cCceEEEEEEec
Confidence 11 2355555543 68887666553 334444432222 367666555444
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=91.14 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|+++.++.+.+ +++|++|.++++-.+.|++.. |+ .++++|..+|-.++
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~------------- 124 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDL------------- 124 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG--------------
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeecccc-------------
Confidence 456799999999999999999997 679999999999999999887 54 57899999996554
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
..+||.|+. .+|...-..=.-+.|++.+.+.|+|||.+++..++....
T Consensus 125 -----------------------~~~fD~IvS--------i~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 125 -----------------------PGKFDRIVS--------IEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp -------------------------S-SEEEE--------ESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred -----------------------CCCCCEEEE--------EechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 147999874 122111111123789999999999999999987765443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=85.87 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=92.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHH----HHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLT----MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~----v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
...+||.||+|.|.++..+..... .-+|.+||+++. ++++|++. +++..+++|+..-. ...
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------~NI~~I~~Da~~p~-~y~------- 197 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------PNIVPIIEDARYPQ-KYR------- 197 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCCEEEECCccChh-hhh-------
Confidence 446899999999999999999874 348999999996 55665432 46889999976421 111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC--
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS-- 694 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~-- 694 (772)
.....+|+|++|+...| -...++.+++..|+|+|.|++-+-.++
T Consensus 198 ----------------------~~~~~vDvV~~Dva~pd------------q~~il~~na~r~LKpGG~~vI~ika~~id 243 (293)
T PTZ00146 198 ----------------------MLVPMVDVIFADVAQPD------------QARIVALNAQYFLKNGGHFIISIKANCID 243 (293)
T ss_pred ----------------------cccCCCCEEEEeCCCcc------------hHHHHHHHHHHhccCCCEEEEEEeccccc
Confidence 00136999999984322 114566789999999999998433221
Q ss_pred ----h-hHHHHHHHHHHHh-ccceEEEeec--CCceEEEEEec
Q 004133 695 ----Q-ATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLS 729 (772)
Q Consensus 695 ----~-~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~vl~a~~ 729 (772)
+ +.+..-++.|++. |.-+-.+.++ ...+.++++..
T Consensus 244 ~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 244 STAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVY 286 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEE
Confidence 1 1122335778887 8865555543 23445555543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-06 Score=86.87 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=73.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.+|+|.|.++.+|.+. ..+|++||+++.+++.|++...-..-.+++++++|..++ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--~~------------- 92 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL--TF------------- 92 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC--Cc-------------
Confidence 3578999999999999999886 358999999999999999876322224588888886543 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...||+|+.=. . .. ..++. .-..+++.+++.|+|||.+++
T Consensus 93 -------------------~~~fD~I~~~~--~--~~--~~~~~--~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 -------------------DGEYDFILSTV--V--LM--FLEAK--TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -------------------CCCcCEEEEec--c--hh--hCCHH--HHHHHHHHHHHHcCCCcEEEE
Confidence 24599998611 0 00 00111 126899999999999998543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-05 Score=81.36 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=80.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+.+||.+|+|.|.++..+....|. .+++++|+++.+++.+++.+. ...+++++.+|..+.. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--~------------ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--F------------ 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--C------------
Confidence 5679999999999998888888775 699999999999999999887 3567999999986642 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
....||+|++...-. .+. . -..+++.+++.|+|||.+++-
T Consensus 103 -------------------~~~~~D~i~~~~~~~----~~~----~--~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 103 -------------------EDNSFDAVTIAFGLR----NVT----D--IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred -------------------CCCcEEEEEEeeeeC----Ccc----c--HHHHHHHHHHHcCCCcEEEEE
Confidence 125699998732111 111 1 267999999999999998863
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.2e-06 Score=85.89 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=90.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHH--HHHhhcccCcc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIK--FVREMKSSSAT 614 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~--~l~~~~~~~~~ 614 (772)
....+||.-|.|+|+|+.+|.+.. |..+|...|+.++-++.|++.| |+ ++++++++.|..+ |-.+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~~~g~~~~------- 109 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVCEEGFDEE------- 109 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GGCG--STT-------
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEecceeccccccc-------
Confidence 456799999999999999998654 7779999999999999999998 55 5689999999653 2001
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHcc-CCCcEEEEEecCC
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL-SEQGLFIVNLVSR 693 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L-~~~Gilv~Nl~~~ 693 (772)
-...+|+||+|+-++ .+.+..+++.| ++||.+++-+.+-
T Consensus 110 -------------------------~~~~~DavfLDlp~P---------------w~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 110 -------------------------LESDFDAVFLDLPDP---------------WEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp --------------------------TTSEEEEEEESSSG---------------GGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred -------------------------ccCcccEEEEeCCCH---------------HHHHHHHHHHHhcCCceEEEECCCH
Confidence 125799999999554 66799999999 8999999776544
Q ss_pred ChhHHHHHHHHHHH-hccceEEE
Q 004133 694 SQATKDMVISRMKM-VFNHLFCL 715 (772)
Q Consensus 694 ~~~~~~~v~~~l~~-vF~~v~~~ 715 (772)
+....++..|++ -|.++..+
T Consensus 150 --eQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 150 --EQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp --HHHHHHHHHHHHTTEEEEEEE
T ss_pred --HHHHHHHHHHHHCCCeeeEEE
Confidence 334555777766 46654443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.5e-06 Score=77.02 Aligned_cols=110 Identities=11% Similarity=0.163 Sum_probs=78.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~-ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
.+..++.+.+.. ..+.+|||+|||.|. ++..|++.|+ +|+++|+++.+++.++++ .+++++.|+++.+
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~- 71 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPN- 71 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCC-
Confidence 455556666544 356899999999995 8999998887 799999999999888654 3789999999876
Q ss_pred cc-CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 131 FM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 131 ~~-~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+. -+.+|+|++.. ++++ +...+-++++-+ |.-+++..++.+.
T Consensus 72 ~~~y~~a~liysir-----pp~e-----l~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 72 LEIYKNAKLIYSIR-----PPRD-----LQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred HHHHhcCCEEEEeC-----CCHH-----HHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 32 35789988733 1211 445555555543 5667777777654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.2e-06 Score=85.27 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=74.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++.+|.... .++++||+++.+++.|++.+.-..-.+++++.+|+.+.+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------------- 140 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-------------- 140 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--------------
Confidence 345789999999999888888775 3799999999999999998732112358999999743211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
....||+|+++... ..+.+.+.+.|+|||.+++.+.
T Consensus 141 -------------------~~~~fD~I~~~~~~----------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 -------------------AYAPFDRILVTAAA----------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------------------cCCCcCEEEEccCc----------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 12569999996421 1223456789999999999875
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.1e-06 Score=84.59 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=85.2
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CCCc-EEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDM-RWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v-~f~~~D~~~l 128 (772)
-+...|.+++.. .+.+|||||||||..+.+++.. ..-.-.-.|..+..+.-........ .+++ .-+..|+++.
T Consensus 13 pIl~vL~~~l~~----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPD----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHHhCc----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 566677788753 2335999999999999999987 3334677888887765444433222 2232 3456788776
Q ss_pred ccc--------cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 129 QVF--------MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 129 ~~~--------~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+ . ..++||.|++..++|-..... .+.+|+.+.++|++||.+++.
T Consensus 89 ~-w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~-----~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 89 P-WPWELPAPLSPESFDAIFCINMLHISPWSA-----VEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred C-CccccccccCCCCcceeeehhHHHhcCHHH-----HHHHHHHHHHhCCCCCEEEEe
Confidence 4 2 245899999999998776543 789999999999999998775
|
The function of this family is unknown. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.6e-06 Score=89.94 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=92.2
Q ss_pred ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEE
Q 004133 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWR 121 (772)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~ 121 (772)
-||-+....+..+.++. .+.+|||+-|=||.++...+..|..+|++||.|..+++.+++++.-++ ..++|+
T Consensus 106 GlFlDqR~nR~~v~~~~------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~ 179 (286)
T PF10672_consen 106 GLFLDQRENRKWVRKYA------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFI 179 (286)
T ss_dssp SS-GGGHHHHHHHHHHC------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEE
T ss_pred eEcHHHHhhHHHHHHHc------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE
Confidence 37777778888887775 367999999999999999888888889999999999999998876544 368999
Q ss_pred EeeccCcc-c-ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 122 VMDMTSMQ-V-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 122 ~~D~~~l~-~-~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++|+.+.- . -..+.||+||..-.-.. .....-...+.+++..+.++|+|||.+++++.+.
T Consensus 180 ~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 180 QGDVFKFLKRLKKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp ES-HHHHHHHHHHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred ecCHHHHHHHHhcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 99998732 0 13468998885332111 1111112237789999999999999998877663
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=79.57 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=82.7
Q ss_pred ccccccchhhHHHHHHHhhcCC-CCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEE
Q 004133 43 SFEWYAEWPQLRDPLISLIGAP-TSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWR 121 (772)
Q Consensus 43 ~~eW~~~~~~l~~~l~~~l~~~-~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~ 121 (772)
.+|-|...+.+..-+...++.. +.-.+.+++|+|||.|-++.....-+...|.|+||.+.+++.+.+++..-..++.++
T Consensus 22 ~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL 101 (185)
T KOG3420|consen 22 LLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLL 101 (185)
T ss_pred hhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhhee
Confidence 3455666667766665555442 224688999999999999976665566779999999999999988776666688999
Q ss_pred EeeccCcccccCCCccEEEecccccccc
Q 004133 122 VMDMTSMQVFMDETFDVILDKGGLDALM 149 (772)
Q Consensus 122 ~~D~~~l~~~~~~sfDvVi~~~~l~~l~ 149 (772)
++|+.++. +..+.||.++.+..+..-.
T Consensus 102 qcdildle-~~~g~fDtaviNppFGTk~ 128 (185)
T KOG3420|consen 102 QCDILDLE-LKGGIFDTAVINPPFGTKK 128 (185)
T ss_pred eeeccchh-ccCCeEeeEEecCCCCccc
Confidence 99999998 7889999999877765443
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=9e-06 Score=87.16 Aligned_cols=146 Identities=15% Similarity=0.154 Sum_probs=95.0
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 624 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 624 (772)
+||.||.|+|+++..|....|+.+|+++||+|..+++|++......-.++.++.+ ++.....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~---dlf~~~~--------------- 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQS---DLFEPLR--------------- 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEee---ecccccC---------------
Confidence 8999999999999999999999999999999999999998862211144455544 4544432
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC----------------CCCcCCcC-CCcHHHHHHHHHccCCCcEEE
Q 004133 625 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS----------------GMTCPAAD-FVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~----------------g~s~Pp~~-f~~~~fl~~~~~~L~~~Gilv 687 (772)
.+||+|+. +.+--.. .+-.-+.. -+-..|+..+.+.|+|+|+++
T Consensus 175 -----------------~~fDlIVs--NPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 175 -----------------GKFDLIVS--NPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred -----------------CceeEEEe--CCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 37999986 2221000 00000000 134678899999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhc--cceEEEeecCCceEEEEEecC
Q 004133 688 VNLVSRSQATKDMVISRMKMVF--NHLFCLQLEEDVNLVLFGLSS 730 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF--~~v~~~~~~~~~N~vl~a~~~ 730 (772)
+-.-..... .+.+.+.+.. ..+...+-..+.+.++.+...
T Consensus 236 le~g~~q~~---~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 236 LEIGLTQGE---AVKALFEDTGFFEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred EEECCCcHH---HHHHHHHhcCCceEEEEEecCCCceEEEEEEec
Confidence 877433333 3444444443 445555545566777766543
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=91.70 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=100.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|.|.|..+.++....+ ..+|+++|+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~-------- 320 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKP-------- 320 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccc--------
Confidence 446899999999999988888764 458999999999999998876 54 358999999887632110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcC-C------------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD-F------------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P-p~~-f------------~~~~fl~~~~~~L~~~ 683 (772)
.....||.|++|+-.+- .|+..- |.. + +..++|..+.+.|+||
T Consensus 321 ---------------------~~~~~fD~Vl~DaPCSg--~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 321 ---------------------QWRGYFDRILLDAPCSG--LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred ---------------------cccccCCEEEEeCCCCc--ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 01246999999985431 122111 111 1 1468899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccce
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNHL 712 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v 712 (772)
|.+|+...+-.++..+.++..+-+-++..
T Consensus 378 G~lvystcsi~~~Ene~~v~~~l~~~~~~ 406 (434)
T PRK14901 378 GTLVYATCTLHPAENEAQIEQFLARHPDW 406 (434)
T ss_pred CEEEEEeCCCChhhHHHHHHHHHHhCCCc
Confidence 99999887777777777787776666543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.3e-06 Score=83.38 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=75.8
Q ss_pred CCeEEEEcccccHHHHH-HHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMF-LHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~-L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..+||.+|+|+|+++.. +... ..+|++||+|+..++.|++.+....-++++++.+|..+++...
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~------------- 118 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP------------- 118 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-------------
Confidence 36899999999999975 4443 2589999999999999999863322247999999999887542
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHc--cCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDA--LSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~--L~~~Gilv~Nl~ 691 (772)
...||+|++|- + ...| +..+.++.+... |.++|++++-..
T Consensus 119 -------------------~~~fDlV~~DP--P-y~~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 119 -------------------GTPHNVVFVDP--P-FRKG--------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -------------------CCCceEEEECC--C-CCCC--------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 14599999943 1 1111 245566766664 799999997654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-06 Score=88.34 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=91.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....++|.||+|.|++..++.+.+ +++|++|.++++..+.|++.+ |+ ..+++|...|=.++
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~------------- 134 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDF------------- 134 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEecccccc-------------
Confidence 566899999999999999999998 789999999999999999976 66 36899999987765
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
..+||-|+. .++.--. .=.-+.||..+++.|+|||.+++..+.....
T Consensus 135 -----------------------~e~fDrIvSvgmfEhvg---------~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 135 -----------------------EEPFDRIVSVGMFEHVG---------KENYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred -----------------------ccccceeeehhhHHHhC---------cccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 244999873 2222110 0123899999999999999999888765432
Q ss_pred HH-HHHHHHHHHhccc
Q 004133 697 TK-DMVISRMKMVFNH 711 (772)
Q Consensus 697 ~~-~~v~~~l~~vF~~ 711 (772)
.. ....=..+-+||.
T Consensus 183 ~~~~~~~~i~~yiFPg 198 (283)
T COG2230 183 EFRRFPDFIDKYIFPG 198 (283)
T ss_pred ccccchHHHHHhCCCC
Confidence 21 1112233556774
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-05 Score=84.10 Aligned_cols=111 Identities=13% Similarity=0.177 Sum_probs=76.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|+|.++..+....+ .+|++||+||.+++.|++.+.... ..++.+..+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------------- 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------------- 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------------
Confidence 3567999999999999988877543 379999999999999999874321 122222111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 699 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 699 (772)
+.+||+|+.++... .-..++..+.+.|+|||.+++.-+.. ....
T Consensus 177 ---------------------~~~fD~Vvani~~~-------------~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~ 220 (250)
T PRK00517 177 ---------------------DLKADVIVANILAN-------------PLLELAPDLARLLKPGGRLILSGILE--EQAD 220 (250)
T ss_pred ---------------------CCCcCEEEEcCcHH-------------HHHHHHHHHHHhcCCCcEEEEEECcH--hhHH
Confidence 12599999854321 12578899999999999999864333 2234
Q ss_pred HHHHHHHHh
Q 004133 700 MVISRMKMV 708 (772)
Q Consensus 700 ~v~~~l~~v 708 (772)
.+...+++.
T Consensus 221 ~v~~~l~~~ 229 (250)
T PRK00517 221 EVLEAYEEA 229 (250)
T ss_pred HHHHHHHHC
Confidence 556666665
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.7e-06 Score=85.29 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=88.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMT 126 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~ 126 (772)
+.=..++..+++. .|+++|||.|.|+|.++..|+.. +..+|+..|+.+..++.|++++...+. ++++.+.|+.
T Consensus 26 pkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 26 PKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred CchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 3444556677766 79999999999999999999976 345799999999999999988866554 6899999998
Q ss_pred Cccccc---CCCccEEEecccccccccCccchHHHHHHHHHHHhcc-ccCeEEEEEEcCchhhhhc
Q 004133 127 SMQVFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL-KSGGKFVCLTLAESHVLGL 188 (772)
Q Consensus 127 ~l~~~~---~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvL-kpGG~~ii~~~~~~~~~~~ 188 (772)
+.. |. +..||.|+. |- ++| -.++..+.++| |+||++++.+-+-+.+.+.
T Consensus 103 ~~g-~~~~~~~~~DavfL----Dl-p~P-------w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~ 155 (247)
T PF08704_consen 103 EEG-FDEELESDFDAVFL----DL-PDP-------WEAIPHAKRALKKPGGRICCFSPCIEQVQKT 155 (247)
T ss_dssp CG---STT-TTSEEEEEE----ES-SSG-------GGGHHHHHHHE-EEEEEEEEEESSHHHHHHH
T ss_pred ccc-ccccccCcccEEEE----eC-CCH-------HHHHHHHHHHHhcCCceEEEECCCHHHHHHH
Confidence 755 53 367898763 32 222 25889999999 8999999998776665553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-06 Score=87.20 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=73.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||.|+|..+..|...... .+|++||++|.+++.|++.+.-..-.+++++++||..-...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------ 138 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------ 138 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------
Confidence 34579999999999999999988654 37999999999999999998322234899999999754322
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...||.|++.+-..+ .| ..+.+.|++||.+|+-+-.
T Consensus 139 ---------------------~apfD~I~v~~a~~~-------ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 ---------------------EAPFDRIIVTAAVPE-------IP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ---------------------G-SEEEEEESSBBSS------------------HHHHHTEEEEEEEEEEESS
T ss_pred ---------------------CCCcCEEEEeeccch-------HH---------HHHHHhcCCCcEEEEEEcc
Confidence 246999999543321 12 2345569999999998753
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.3e-06 Score=87.31 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=77.4
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
++||.||+|.|.++..+.+.+|..+++++|+++.+++.|++.+.- ..+++++++.+|..+. ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~---~~------------- 64 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD---PF------------- 64 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC---CC-------------
Confidence 379999999999999998888888999999999999999988721 1256889998886332 00
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|+.-- +...... ...+|+.+++.|+|||.+++--
T Consensus 65 ------------------~~~fD~I~~~~--------~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 65 ------------------PDTYDLVFGFE--------VIHHIKD--KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ------------------CCCCCEeehHH--------HHHhCCC--HHHHHHHHHHHcCCCCEEEEEE
Confidence 14699998511 1000111 2789999999999999999754
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.1e-06 Score=85.94 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=67.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
.+...+.+.+.. .++.+|||+|||+|.++..|++.+. .|+++|+++.+++.++++... ..+++++++|+.+++ +
T Consensus 16 ~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~-~ 89 (253)
T TIGR00755 16 SVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVD-L 89 (253)
T ss_pred HHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCC-h
Confidence 444445555543 5678999999999999999999875 599999999999999876633 568999999999987 5
Q ss_pred cCCCcc---EEEecccc
Q 004133 132 MDETFD---VILDKGGL 145 (772)
Q Consensus 132 ~~~sfD---vVi~~~~l 145 (772)
+ .|| +|+++-.+
T Consensus 90 ~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPY 104 (253)
T ss_pred h--HcCCcceEEEcCCh
Confidence 4 466 77765443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=84.38 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=91.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.|...|....|..+|+.||+|..-++.||+......-++..|+.+|..+=
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------------------ 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------------------ 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------------------
Confidence 34999999999999999999999999999999999999999998443223336666664331
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHH
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 702 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 702 (772)
. ..+||+||. +.+-. .|.. ....+..+++..++++|++||-|-+=. .+... .-
T Consensus 221 ----------------v-~~kfd~Iis--NPPfh-~G~~--v~~~~~~~~i~~A~~~L~~gGeL~iVa-n~~l~----y~ 273 (300)
T COG2813 221 ----------------V-EGKFDLIIS--NPPFH-AGKA--VVHSLAQEIIAAAARHLKPGGELWIVA-NRHLP----YE 273 (300)
T ss_pred ----------------c-cccccEEEe--CCCcc-CCcc--hhHHHHHHHHHHHHHhhccCCEEEEEE-cCCCC----hH
Confidence 1 237999998 22211 1111 112344599999999999999654311 14444 35
Q ss_pred HHHHHhccceEEEe
Q 004133 703 SRMKMVFNHLFCLQ 716 (772)
Q Consensus 703 ~~l~~vF~~v~~~~ 716 (772)
..|+++|.++..+.
T Consensus 274 ~~L~~~Fg~v~~la 287 (300)
T COG2813 274 KKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHhcCCEEEEE
Confidence 67888999888775
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.2e-06 Score=93.81 Aligned_cols=131 Identities=21% Similarity=0.142 Sum_probs=96.0
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
+|-+....+..+..++ .+.+||++-|=||.++.+.+..|..+||+||.|..+|+.|++++.-++ ....|++
T Consensus 201 fFlDqR~~R~~l~~~~------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGELA------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhhc------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 4444455555566665 378999999999999999999998889999999999999998876554 2578999
Q ss_pred eeccCccc---ccCCCccEEEecccccc-cccCc-cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 123 MDMTSMQV---FMDETFDVILDKGGLDA-LMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 123 ~D~~~l~~---~~~~sfDvVi~~~~l~~-l~~~~-~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.++-. -...+||+|+....-.. -...+ .....+..++..+.++|+|||.++.++...
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99988521 12359999885322111 11111 011237889999999999999999988664
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-05 Score=79.56 Aligned_cols=141 Identities=14% Similarity=0.192 Sum_probs=96.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+.-.+++.+|+|.|.|+.-|...- -+++++|+++..++.|++..+ .-++++++++|--++..
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~P-------------- 103 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFWP-------------- 103 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCCC--------------
Confidence 455789999999999999998774 489999999999999999985 34789999998765521
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc-----HHHHHHHHHccCCCcEEEEEecCC--
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-----GSFLLTVKDALSEQGLFIVNLVSR-- 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~-----~~fl~~~~~~L~~~Gilv~Nl~~~-- 693 (772)
..+||+|++ ++ -..|++ ..++..+...|+|||.||+=-+..
T Consensus 104 --------------------~~~FDLIV~----SE--------VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~ 151 (201)
T PF05401_consen 104 --------------------EGRFDLIVL----SE--------VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN 151 (201)
T ss_dssp --------------------SS-EEEEEE----ES---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred --------------------CCCeeEEEE----eh--------HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence 367999998 22 123343 247888999999999999855421
Q ss_pred -----ChhHHHHHHHHHHHhccceEEEeecC---CceEEEEEecCC
Q 004133 694 -----SQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLFGLSSE 731 (772)
Q Consensus 694 -----~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~vl~a~~~~ 731 (772)
...-.+.++..|++.|..|-.+.+.. +.+-++..+.++
T Consensus 152 c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 152 CRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp HHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE--
T ss_pred ccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecCC
Confidence 11224778899999999888777643 345566666554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=82.98 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC--
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-- 127 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~-- 127 (772)
+...+.+.+.......+..|||+|||+|.++..++.. +...+++||.|+.+|..|.+++.... ..+..+..+++.
T Consensus 133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 133 WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA 212 (328)
T ss_pred HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence 3344444443322234568999999999999988876 55579999999999999977764332 245555444433
Q ss_pred --cccccCCCccEEEeccccc-------------------ccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 128 --MQVFMDETFDVILDKGGLD-------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 128 --l~~~~~~sfDvVi~~~~l~-------------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
......+++|+++++-..- ++....++...+..++.-+.|+|+|||.+.+...
T Consensus 213 ~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 213 SDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1124568999999765421 1111223334478899999999999999888765
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.4e-06 Score=82.81 Aligned_cols=110 Identities=13% Similarity=0.241 Sum_probs=88.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
-++++++.||.=+|..+...+..+| ..+|+++|+|+.-.+++.+...+. .+..+++++++|.+-|.++-.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~-------- 143 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA-------- 143 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh--------
Confidence 4678999999999966665566666 469999999999999997776332 367899999999999988752
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+...||.+|+|+|...+ ..+++.+-++|++||+++++-
T Consensus 144 -------------------~~~~~tfDfaFvDadK~nY-------------~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 -------------------DGESGTFDFAFVDADKDNY-------------SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred -------------------cCCCCceeEEEEccchHHH-------------HHHHHHHHhhcccccEEEEec
Confidence 1235789999999987643 489999999999999999864
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=85.21 Aligned_cols=102 Identities=9% Similarity=0.015 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-ccc----cCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QVF----MDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~----~~~sfD 137 (772)
.+..+|||+|||+|..+..++.. + -..|+.+|.++..++.|++.+.+.+ .+++++.+|+.+. +.+ ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45689999999999999999874 2 2369999999999999988876544 3699999999773 211 136899
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+|+..+ - ...+..+++.+.++|+|||.+++-
T Consensus 197 ~VFIDa----~------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA----D------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC----C------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 998533 1 123789999999999999998764
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.2e-06 Score=94.58 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=81.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|+|.++..|...+|+.++++||+++.|++.|++.... ...+++++.+|+.++-....
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g~~ie~I~gDa~dLp~~fe------------ 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EGRSWNVIKGDAINLSSSFE------------ 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cCCCeEEEEcchHhCccccC------------
Confidence 35799999999999988888888999999999999999999987532 23468889999877311111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeC-----CCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDV-----DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~-----~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
+..||+|+... .+--+..+...++ =.-..+|+.+.+.|+|||.+++.-
T Consensus 485 -------------------deSFDvVVsn~vLH~L~syIp~~g~~f~~--edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 485 -------------------KESVDTIVYSSILHELFSYIEYEGKKFNH--EVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -------------------CCCEEEEEEchHHHhhhhhcccccccccH--HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 35699998621 0000000000000 022689999999999999999863
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9e-06 Score=81.56 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=84.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+|..||+|.|..+..|++.+|...|+++|-||+|++.|++.. +.+++..+|...|-.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p-------------- 89 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP-------------- 89 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC--------------
Confidence 5678999999999999999999999999999999999999998875 568999999999821
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
....|+|+..+ .-.-+ | -..+.|..+...|.|||+|++.+...
T Consensus 90 --------------------~~~~dllfaNA----vlqWl---p---dH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 90 --------------------EQPTDLLFANA----VLQWL---P---DHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred --------------------CCccchhhhhh----hhhhc---c---ccHHHHHHHHHhhCCCceEEEECCCc
Confidence 25688887632 11111 1 13678999999999999999999765
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.4e-06 Score=88.96 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|+|.+...+.+.++..++++||+++.+++.|++.+. .++++++.+|+.+. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l----p------------ 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL----P------------ 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC----C------------
Confidence 3468999999999988888887777899999999999999999875 35688999997653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.....||+|+... ...-+ | -....|+.+.+.|+|||.+++
T Consensus 174 -----------------~~~~sFDvVIs~~----~L~~~--~----d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 -----------------FPTDYADRYVSAG----SIEYW--P----DPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred -----------------CCCCceeEEEEcC----hhhhC--C----CHHHHHHHHHHhcCCCcEEEE
Confidence 1135799998721 00001 1 125689999999999999876
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.7e-06 Score=88.86 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
...+||.+|+|.|..+.++.+. +..+|+.||+++.+++.+++.+.. ..++++++.+|+.+.-....++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4569999999999999988886 456899999999999999876632 2468999999998852134578999996
Q ss_pred cccccccccCccchHH-HHHHHH-HHHhccccCeEEEEE
Q 004133 142 KGGLDALMEPELGHKL-GNQYLS-EVKRLLKSGGKFVCL 178 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~-~~~~l~-ei~rvLkpGG~~ii~ 178 (772)
.. .+-..... ...+ -..+++ .+.+.|+|||++++.
T Consensus 183 D~-~dp~~~~~-~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DL-ADPVEGGP-CYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cC-CCccccCc-chhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 53 12110000 0001 346777 899999999998865
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-06 Score=90.77 Aligned_cols=137 Identities=21% Similarity=0.274 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a 107 (772)
++|.-..|....+.-.-.-+..|+.... ++... ..+..+||+|||+|.....- ....++|.|++...+..+
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~q----fl~~~--~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~a 81 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQ----FLDSQ--PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGA 81 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHH----HHhcc--CCcceeeecccCCcccCcCC---Ccceeeecchhhhhcccc
Confidence 4566666665431101112333344443 33321 34789999999999876421 222489999999888777
Q ss_pred HHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 108 LRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 108 ~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++.. ......+|+.++| +.+.+||.++...+++|+.... .+..+++++.|+|+|||..++..++..
T Consensus 82 k~~~-----~~~~~~ad~l~~p-~~~~s~d~~lsiavihhlsT~~----RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 82 KRSG-----GDNVCRADALKLP-FREESFDAALSIAVIHHLSTRE----RRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred ccCC-----CceeehhhhhcCC-CCCCccccchhhhhhhhhhhHH----HHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 4332 1167889999999 9999999999999999998743 478999999999999999888777643
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.6e-05 Score=79.02 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=80.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
...+||.||+|.|.++..+....| ..+++++|+++.+++.|++.+.-. .+++++++.+|..+.. .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----------- 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F----------- 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----------
Confidence 347899999999999999988887 679999999999999999998532 2467899988876531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
....||+|++...-. .+. -...+|+.+.+.|+|||.+++.
T Consensus 118 --------------------~~~~~D~I~~~~~l~----~~~------~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 118 --------------------PDNSFDAVTIAFGLR----NVP------DIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred --------------------CCCCccEEEEecccc----cCC------CHHHHHHHHHHhccCCcEEEEE
Confidence 135799998732111 111 1368899999999999988764
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.9e-06 Score=84.44 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-ccc----cCCCccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QVF----MDETFDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~----~~~sfDv 138 (772)
...+|||+||++|.-+..++.. + -.+|+.+|+++...+.|++.+...+ .+++++.+|+.+. +.+ ..++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4679999999999999999975 2 2579999999999999988775443 3799999999873 211 1358999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+..+ -.. .+..+++.+.++|+|||.+++-.
T Consensus 125 VFiDa----~K~------~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKR------NYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGG------GHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----ccc------chhhHHHHHhhhccCCeEEEEcc
Confidence 98533 221 26789999999999999998754
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.9e-06 Score=83.59 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=86.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeE----EEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK----VHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~----v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
-.+..+|.||+-.|.|+..++..|....|.+||||+..++.|+++.-+..+.... ...+++..|..-..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~------- 129 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ------- 129 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-------
Confidence 4568899999999999999999998889999999999999999998664332222 23444444422211
Q ss_pred cccccccccccCCCCCCCCCC--------------CCCCCceeEEEE-------eCCCCCCCCCCCcCCcCCCcHHHHHH
Q 004133 617 MSVVHGNEITSNNTRSCNGNC--------------TASNARVDILII-------DVDSPDSSSGMTCPAADFVEGSFLLT 675 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~yD~Iiv-------D~~~~d~~~g~s~Pp~~f~~~~fl~~ 675 (772)
...++.+..++...|.. .....+||+|++ -++-+| .|| ..||..
T Consensus 130 ----~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD--~GL---------~~ff~k 194 (288)
T KOG2899|consen 130 ----RNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD--DGL---------RRFFRK 194 (288)
T ss_pred ----cccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc--HHH---------HHHHHH
Confidence 11111111111111110 124678999984 455555 466 899999
Q ss_pred HHHccCCCcEEEEE
Q 004133 676 VKDALSEQGLFIVN 689 (772)
Q Consensus 676 ~~~~L~~~Gilv~N 689 (772)
+.++|.|||+||+-
T Consensus 195 is~ll~pgGiLvvE 208 (288)
T KOG2899|consen 195 ISSLLHPGGILVVE 208 (288)
T ss_pred HHHhhCcCcEEEEc
Confidence 99999999999974
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-05 Score=86.35 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=75.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||+||+|+|.....+.... +..+|++||+++.+++.|++.+.-..-++++++.+|..+. .
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~---------- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----P---------- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----C----------
Confidence 455799999999998776666554 4568999999999999999875211124788999986432 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+..||+|+...--. . .+ -...+++.+.+.|+|||.|++.
T Consensus 142 -------------------~~~~~fD~Vi~~~v~~-----~--~~---d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 -------------------VADNSVDVIISNCVIN-----L--SP---DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -------------------CCCCceeEEEEcCccc-----C--CC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 1135799999743111 0 01 1267899999999999999874
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=87.59 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||+||+|.|.++..+.+..+. ..|++||++|.+++.|++.+.-..-+++.++.+|+.+.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------------- 146 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------------- 146 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-------------
Confidence 4568999999999999999887753 47999999999999999875321225689999998765322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|+++.... +....+.+.|+|||.+++.+
T Consensus 147 --------------------~~~fD~Ii~~~g~~----------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 --------------------FAPYDVIFVTVGVD----------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------------------cCCccEEEECCchH----------------HhHHHHHHhcCCCCEEEEEe
Confidence 13599999963211 12234567899999988765
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.7e-06 Score=82.29 Aligned_cols=128 Identities=19% Similarity=0.326 Sum_probs=76.2
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~ 125 (772)
|-.. ..+.+.+++... .+...|-|+|||.+.++..+. .++ .|...|+-. . +-.+..+|+
T Consensus 55 WP~n---Pvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva------------~--n~~Vtacdi 113 (219)
T PF05148_consen 55 WPVN---PVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA------------P--NPRVTACDI 113 (219)
T ss_dssp SSS----HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS-------------S--STTEEES-T
T ss_pred CCCC---cHHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC------------C--CCCEEEecC
Confidence 7554 345567777651 345799999999999997653 344 599999854 1 224778999
Q ss_pred cCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh-hhcccccc-cCCcEEEEEE
Q 004133 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 203 (772)
Q Consensus 126 ~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 203 (772)
.+.| +++++.|+++....|..- . ...++.|+.|+|||||.+.+......-. .+.+.... ..|+.+....
T Consensus 114 a~vP-L~~~svDv~VfcLSLMGT---n-----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 114 ANVP-LEDESVDVAVFCLSLMGT---N-----WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp TS-S---TT-EEEEEEES---SS---------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ccCc-CCCCceeEEEEEhhhhCC---C-----cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 9999 999999999876555332 2 7899999999999999999987654311 12222222 3367666654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=85.51 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHhc-cCCCCcEE--EEeeccCcccc-----cCC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV-RDRSDMRW--RVMDMTSMQVF-----MDE 134 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~----g-~~~V~gvDiS~~~I~~a~~~~~-~~~~~v~f--~~~D~~~l~~~-----~~~ 134 (772)
++..|+|+|||+|+-+..|.+. + ...++++|+|..+++.+.++.. ...+.+++ +++|.++.-.+ ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 5678999999999887665553 2 2369999999999999998887 56676666 88888773101 123
Q ss_pred CccEEEecc-cccccccCccchHHHHHHHHHHHh-ccccCeEEEEE
Q 004133 135 TFDVILDKG-GLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCL 178 (772)
Q Consensus 135 sfDvVi~~~-~l~~l~~~~~~~~~~~~~l~ei~r-vLkpGG~~ii~ 178 (772)
...+++.-| ++..+..++ ...+|+++++ .|+|||.|++.
T Consensus 156 ~~r~~~flGSsiGNf~~~e-----a~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPE-----AAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCHHH-----HHHHHHHHHHhhCCCCCEEEEe
Confidence 456776655 677765544 7899999999 99999998774
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=84.33 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=75.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..|... ..++++||++|.+++.|++.+. ...++++|+... .
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~----~------------ 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL----P------------ 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC----c------------
Confidence 4578999999999998888765 3689999999999999998753 246778886442 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+..||+|+....- ..+ + --..+|..+.+.|+|||.|++..+..
T Consensus 99 -----------------~~~~~fD~V~s~~~l----~~~--~----d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 99 -----------------LATATFDLAWSNLAV----QWC--G----NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -----------------CCCCcEEEEEECchh----hhc--C----CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 113579999873211 001 1 12689999999999999999987654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=81.57 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=79.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+...+ |..+++++|+++.+++.|++.... ..++++++.+|...+- .
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--~----------- 83 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--F----------- 83 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--C-----------
Confidence 445789999999999998888877 677999999999999999988322 2457888888864420 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....||+|+...--. .+.. ...+++.+.+.|+|||.+++-.
T Consensus 84 --------------------~~~~~D~v~~~~~~~----~~~~------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRVLQ----HLED------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred --------------------CCCCceEEEEechhh----ccCC------HHHHHHHHHHHhcCCcEEEEEe
Confidence 135799999843111 1111 2679999999999999988643
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.9e-06 Score=81.86 Aligned_cols=106 Identities=9% Similarity=-0.086 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-ccc-cC-CCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QVF-MD-ETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~-~~-~sfDvVi~~ 142 (772)
.+.++||++||+|.++..++.+|...|+++|.++.+++.++++..... .+++++++|+.+. ..+ .. ..||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999999999998789999999999999987765443 2588999999653 211 12 247888875
Q ss_pred ccccccccCccchHHHHHHHHHHH--hccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~~ii~~~~ 181 (772)
-.+..- ....+++.+. .+|+++|.+++-+..
T Consensus 129 PPy~~~--------~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNG--------ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCC--------cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 544321 1334444443 478899988776543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=81.89 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=96.9
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 624 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 624 (772)
-+|.||+|.|.....++...|+..+.+||+....+..|.+......-+++.++.+||..++...-.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~-------------- 85 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFP-------------- 85 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHST--------------
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhccc--------------
Confidence 689999999999999999999999999999999998887776322347899999999999988651
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHH
Q 004133 625 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISR 704 (772)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~ 704 (772)
+...|-|.+ .=+||-.--.-.-..+++++||..+.+.|+|||.+- +.+.+..+.+.+++.
T Consensus 86 ----------------~~~v~~i~i--~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~--~~TD~~~y~~~~~~~ 145 (195)
T PF02390_consen 86 ----------------PGSVDRIYI--NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY--FATDVEEYAEWMLEQ 145 (195)
T ss_dssp ----------------TTSEEEEEE--ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEE--EEES-HHHHHHHHHH
T ss_pred ----------------CCchheEEE--eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHHH
Confidence 367999988 334432111111246899999999999999999875 556778887777787
Q ss_pred HHHh
Q 004133 705 MKMV 708 (772)
Q Consensus 705 l~~v 708 (772)
+.+.
T Consensus 146 ~~~~ 149 (195)
T PF02390_consen 146 FEES 149 (195)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7774
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.8e-05 Score=77.74 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
+..+||.+|+|.|.+...+... ..+|+++|++|.+++.|++.+... .+.++.++.+|..+.+ .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~---------- 87 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---R---------- 87 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---c----------
Confidence 3468999999999999988887 469999999999999998876332 1222888888865421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC--CC--------CCCcCC-cCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS--SS--------GMTCPA-ADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~--~~--------g~s~Pp-~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...||+|+.+.--... .. ...+.. ....-..+++.+.+.|+|+|.+++
T Consensus 88 ---------------------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 88 ---------------------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ---------------------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 1369999974210000 00 000000 011235689999999999999988
Q ss_pred EecC
Q 004133 689 NLVS 692 (772)
Q Consensus 689 Nl~~ 692 (772)
.+.+
T Consensus 147 ~~~~ 150 (188)
T PRK14968 147 LQSS 150 (188)
T ss_pred EEcc
Confidence 7644
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=81.97 Aligned_cols=117 Identities=20% Similarity=0.155 Sum_probs=87.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEE-eec
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRV-MDM 125 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~-~D~ 125 (772)
++...++..++.. .+..+|||+|.+.|.-+.+|+.. + ..++|.+|+++++++.|++++.+.+. .+..+. +|+
T Consensus 45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 3444555555544 46789999999999999999886 3 35799999999999999988865443 477777 577
Q ss_pred cCcc-cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 126 TSMQ-VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 126 ~~l~-~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+.- ....++||+|+. |+-. ..+..+|+.+.++|+|||.+++-..
T Consensus 122 l~~l~~~~~~~fDliFI----DadK------~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 122 LDVLSRLLDGSFDLVFI----DADK------ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHHHhccCCCccEEEE----eCCh------hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 6643 134689999985 3222 2267999999999999999988543
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.1e-05 Score=68.77 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=77.7
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 624 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 624 (772)
+++.+|.|.|.+...+.. .+..++.++|+++..++.+++........+++++.+|..++... .
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------- 63 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-A--------------- 63 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-c---------------
Confidence 479999999998887777 56679999999999999998433222456799999998887541 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 625 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||+|+++..-... .-....+++.+.+.|+++|.+++-
T Consensus 64 ----------------~~~~d~i~~~~~~~~~---------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 ----------------DESFDVIISDPPLHHL---------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----------------CCceEEEEEccceeeh---------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2569999985432210 124488999999999999999864
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=82.67 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCc-EEEEeeccCcccccC-----CCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQVFMD-----ETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v-~f~~~D~~~l~~~~~-----~sfDvVi~ 141 (772)
++.++||+|||+|.++..+++.|...|+++|+++.|+....+. .+++ .+...|+..+. ..+ ..+|+++.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~----~~~v~~~~~~ni~~~~-~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ----DERVKVLERTNIRYVT-PADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc----CCCeeEeecCCcccCC-HhHcCCCceeeeEEEe
Confidence 5679999999999999999999888899999999888753222 2332 24444555433 222 24444443
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
. +..++..+.+.|++ |.++..
T Consensus 150 S---------------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 150 S---------------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred e---------------hHhHHHHHHHHhCc-CeEEEE
Confidence 1 24578899999999 776554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-06 Score=88.87 Aligned_cols=109 Identities=17% Similarity=0.285 Sum_probs=73.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 623 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 623 (772)
.+||.+|+|||.|..-|.+.. ..|++||+.+.++++|+++-.. +|-+.--+.--++|+....
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~--dP~~~~~~~y~l~~~~~~~-------------- 152 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKM--DPVLEGAIAYRLEYEDTDV-------------- 152 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhc--Cchhccccceeeehhhcch--------------
Confidence 579999999999999998885 6899999999999999999533 3222111111122332221
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 624 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
+....+||+|++ .+.-.-+.-| .+|+..+.++|+|+|.+++-.+.|.
T Consensus 153 --------------E~~~~~fDaVvc----sevleHV~dp------~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 153 --------------EGLTGKFDAVVC----SEVLEHVKDP------QEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred --------------hhcccccceeee----HHHHHHHhCH------HHHHHHHHHHhCCCCceEeeehhhh
Confidence 111356999986 2110001112 8899999999999999998776664
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=83.51 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc----------------------------------
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---------------------------------- 113 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~---------------------------------- 113 (772)
.+.+||..|||-|+++..++..|+ .+.|.|+|--|+-..+=.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 467999999999999999999999 599999999997433211110
Q ss_pred -------CCCCcEEEEeeccCcccccC---CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEE
Q 004133 114 -------DRSDMRWRVMDMTSMQVFMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 114 -------~~~~v~f~~~D~~~l~~~~~---~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
...++....+|+.+.- .++ ++||+|+....+|...+ +..+++.|.++|||||+.|=
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y-~~~~~~~~~d~VvT~FFIDTA~N-------i~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVY-GPDENKGSFDVVVTCFFIDTAEN-------IIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcccccCCCCceeEecCccEEec-CCcccCCcccEEEEEEEeechHH-------HHHHHHHHHHHhccCCEEEe
Confidence 0114556666766654 233 69999998877776544 88999999999999996654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-05 Score=87.29 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=69.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~ 129 (772)
.+...+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... ..+++++++|+.+..
T Consensus 23 ~i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 344445555544 5788999999999999999998864 6999999999999998877543 357999999998876
Q ss_pred cccCCCccEEEeccccc
Q 004133 130 VFMDETFDVILDKGGLD 146 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~ 146 (772)
+ ..||+|+++...+
T Consensus 99 -~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 -F--PYFDVCVANVPYQ 112 (294)
T ss_pred -c--cccCEEEecCCcc
Confidence 4 3689988765443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-05 Score=76.65 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
...-+||+|||+|-.+..|++. +..-+.++|+++.+++..++.+..++.++..++.|+.+- +..++.|+++-+-..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~--l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG--LRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh--hccCCccEEEECCCc
Confidence 4567899999999999999887 445689999999999887777766667788999998774 345899988755433
Q ss_pred cccc--------------cCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEEE
Q 004133 146 DALM--------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 201 (772)
Q Consensus 146 ~~l~--------------~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~ 201 (772)
---. ...++.+...+++..+-.+|.|.|.|+++....... +++.... ..+|..++
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p-~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP-KEILKILEKKGYGVRI 190 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH-HHHHHHHhhcccceeE
Confidence 2111 122334447888999999999999999998775433 3333322 23555554
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=86.57 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=98.8
Q ss_pred cceeecCC-ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHH
Q 004133 506 NQLKVYHG-YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 584 (772)
Q Consensus 506 ~~~~~d~~-~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~ 584 (772)
..+.+||+ -...-+|..--..|-++... ..+..+||.+|+|+|.|++...... ..+|.+||+||..++.|++
T Consensus 130 ~~I~idPg~AFGTG~H~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~ 202 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARE 202 (295)
T ss_dssp EEEEESTTSSS-SSHCHHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHH
Confidence 45778886 44555554322222222221 1344699999999999999888874 3489999999999999999
Q ss_pred hcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC
Q 004133 585 YFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 663 (772)
Q Consensus 585 ~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P 663 (772)
+..+.. .++++++.. .+ ....+||+|+..+...
T Consensus 203 N~~~N~~~~~~~v~~~------~~-------------------------------~~~~~~dlvvANI~~~--------- 236 (295)
T PF06325_consen 203 NAELNGVEDRIEVSLS------ED-------------------------------LVEGKFDLVVANILAD--------- 236 (295)
T ss_dssp HHHHTT-TTCEEESCT------SC-------------------------------TCCS-EEEEEEES-HH---------
T ss_pred HHHHcCCCeeEEEEEe------cc-------------------------------cccccCCEEEECCCHH---------
Confidence 984321 335655310 01 1137899999866433
Q ss_pred CcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEec
Q 004133 664 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 664 p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~ 729 (772)
.=...+..+.++|+|+|.|++.=+- .+..+.+.+.+++-| .........+++.+..+
T Consensus 237 ----vL~~l~~~~~~~l~~~G~lIlSGIl--~~~~~~v~~a~~~g~---~~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 237 ----VLLELAPDIASLLKPGGYLILSGIL--EEQEDEVIEAYKQGF---ELVEEREEGEWVALVFK 293 (295)
T ss_dssp ----HHHHHHHHCHHHEEEEEEEEEEEEE--GGGHHHHHHHHHTTE---EEEEEEEETTEEEEEEE
T ss_pred ----HHHHHHHHHHHhhCCCCEEEEcccc--HHHHHHHHHHHHCCC---EEEEEEEECCEEEEEEE
Confidence 1145667778889999999975332 233456677775522 23333344566665543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=82.78 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.++..+... +..+|++||+|+.+++.|++.+... ..+++++.+|..+++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~~---------------- 98 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAVE---------------- 98 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhcc----------------
Confidence 468999999999998888875 3358999999999999999876321 1257889998766421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCCCCCCC--cCCcCC--------CcHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMT--CPAADF--------VEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~-~~d~~~g~s--~Pp~~f--------~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...||+|+.+.- ......+.. .|...+ .-..+++.+.+.|++||.+++-..
T Consensus 99 ------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 99 ------------------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ------------------CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 256999999641 111000000 000000 125688899999999999997443
Q ss_pred CCChhHHHHHHHHHHH
Q 004133 692 SRSQATKDMVISRMKM 707 (772)
Q Consensus 692 ~~~~~~~~~v~~~l~~ 707 (772)
... ....++..+++
T Consensus 161 ~~~--~~~~~~~~l~~ 174 (223)
T PRK14967 161 ELS--GVERTLTRLSE 174 (223)
T ss_pred ccc--CHHHHHHHHHH
Confidence 322 12334555543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-05 Score=85.34 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=103.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.++.|-|+-+..|+..+.+ ..|+++|+++.-++..++.+ |+ .++.+...|+..+-...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~-------- 180 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAAL-------- 180 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhc--------
Confidence 34568999999999999999888754 48999999999998888665 65 45889999998763332
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 682 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~ 682 (772)
...||.|++|+-.+. .||-.-.++. +..+.|..+.+.|+|
T Consensus 181 ------------------------~~~fD~ILvDaPCSG--~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp 234 (470)
T PRK11933 181 ------------------------PETFDAILLDAPCSG--EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP 234 (470)
T ss_pred ------------------------hhhcCeEEEcCCCCC--CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 246999999995542 2333222221 247889999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
||++|....+-+++..+.+++.+.+-++.
T Consensus 235 GG~LVYSTCT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 235 GGTLVYSTCTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 99999999888888888889888776664
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=81.02 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.+|+|.|.++.+|... ..+|++||++|.+++.|++...- .+-.+++.+.|...+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~--~~------------- 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAR-ENLPLRTDAYDINAA--AL------------- 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHH-hCCCceeEeccchhc--cc-------------
Confidence 4579999999999999999875 35899999999999999876631 111266666665332 01
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~-~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||+|+.-. ... + ++. .-..+++.+++.|+|||.+++.
T Consensus 92 -------------------~~~fD~I~~~~~~~~-----~--~~~--~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -------------------NEDYDFIFSTVVFMF-----L--QAG--RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -------------------cCCCCEEEEeccccc-----C--CHH--HHHHHHHHHHHHhCCCcEEEEE
Confidence 14699998621 100 0 111 1257999999999999985543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=85.15 Aligned_cols=95 Identities=13% Similarity=0.240 Sum_probs=72.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC---CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF---VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~---~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.++..|...++. ..+++||+++.+++.|++.+ +++++.++|+.+. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~l----p--------- 146 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRL----P--------- 146 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccC----C---------
Confidence 4467999999999999988887764 37999999999999998875 3578888986542 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+..||+|+. +++ +.++..+++.|+|||.|++-..
T Consensus 147 --------------------~~~~sfD~I~~-~~~----------------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 147 --------------------FADQSLDAIIR-IYA----------------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred --------------------CcCCceeEEEE-ecC----------------CCCHHHHHhhccCCCEEEEEeC
Confidence 11367999985 111 1235778999999999997543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.7e-05 Score=81.37 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=102.5
Q ss_pred cceeecCC-ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHH
Q 004133 506 NQLKVYHG-YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 584 (772)
Q Consensus 506 ~~~~~d~~-~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~ 584 (772)
..+++||+ -...-||-.-...+-++ +... ..+.+||.+|+|+|.|+....... -.++.++|+||.-+++|++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT~lcL~~L----e~~~--~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTTSLCLEAL----EKLL--KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred eEEEEccccccCCCCChhHHHHHHHH----HHhh--cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHH
Confidence 45788997 34455664333222222 2221 467899999999999988877764 4489999999999999999
Q ss_pred hcCCCCCC-CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC
Q 004133 585 YFGFTQDK-SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 663 (772)
Q Consensus 585 ~Fg~~~~~-rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P 663 (772)
..-+..-+ ..++-..+..+. ....+||+|+..+-..
T Consensus 204 Na~~N~v~~~~~~~~~~~~~~----------------------------------~~~~~~DvIVANILA~--------- 240 (300)
T COG2264 204 NARLNGVELLVQAKGFLLLEV----------------------------------PENGPFDVIVANILAE--------- 240 (300)
T ss_pred HHHHcCCchhhhcccccchhh----------------------------------cccCcccEEEehhhHH---------
Confidence 88542111 111111111111 1235799999866332
Q ss_pred CcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHH-HHhccceEEEeecCCceEEEEEe
Q 004133 664 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRM-KMVFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 664 p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l-~~vF~~v~~~~~~~~~N~vl~a~ 728 (772)
.-..+...++.+|+|||.+++.=+-.+ ..++|.+.+ +.-|..+-... ...++.+..
T Consensus 241 ----vl~~La~~~~~~lkpgg~lIlSGIl~~--q~~~V~~a~~~~gf~v~~~~~---~~eW~~i~~ 297 (300)
T COG2264 241 ----VLVELAPDIKRLLKPGGRLILSGILED--QAESVAEAYEQAGFEVVEVLE---REEWVAIVG 297 (300)
T ss_pred ----HHHHHHHHHHHHcCCCceEEEEeehHh--HHHHHHHHHHhCCCeEeEEEe---cCCEEEEEE
Confidence 115788899999999999997643333 356677777 44565544433 234555544
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=84.98 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
..+.-|||+|||+|.++...+..|.++|++|+.|+ |.+.|++..+.+. .++..+.+.+++.. + .+..|++|+-.+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~DviISEPM 252 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVIISEPM 252 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEEEeccc
Confidence 35678999999999999999999999999999887 7778877665443 36889999999987 4 478999998665
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
-..+.++ ..++.++ ..++.|||.|.++
T Consensus 253 G~mL~NE----RMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 253 GYMLVNE----RMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred hhhhhhH----HHHHHHH-HHHhhcCCCCccc
Confidence 4444331 1123333 4569999999875
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.1e-05 Score=85.82 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++.++.+.+ +.+|++||+++.+++.|++... +..+++..+|..+. .
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D~~~l----~----------- 226 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA---GLPVEIRLQDYRDL----N----------- 226 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECchhhc----C-----------
Confidence 345689999999999999998876 4599999999999999998763 22478888886442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..||+|+.- ++......-.-..+++.+.+.|+|||.+++..+...
T Consensus 227 ---------------------~~fD~Ivs~--------~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 227 ---------------------GQFDRIVSV--------GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred ---------------------CCCCEEEEe--------CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 469999751 110000000125789999999999999998765543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.7e-05 Score=80.46 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=78.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.++..+....+..+|++||++|.+++.|++.+ ++++++.+|..++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---------------- 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---------------- 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----------------
Confidence 46899999999999888877766679999999999999999864 368999999988742
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCC---CCCCCcC------CcCCC-cHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDV-DSPDS---SSGMTCP------AADFV-EGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~-~~~d~---~~g~s~P------p~~f~-~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+||+||.+. +.... ...+ .+ .-..+ -..|+..+...|.|+|.+.+-..
T Consensus 124 ------------------~~kFDlIIsNPPF~~l~~~d~~~~-~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 124 ------------------NEKFDVVISNPPFGKINTTDTKDV-FEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred ------------------cCCCcEEEEcCCccccCchhhhhh-hhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 24699999843 11100 0000 00 00112 26899999999999997776544
Q ss_pred C
Q 004133 692 S 692 (772)
Q Consensus 692 ~ 692 (772)
+
T Consensus 185 s 185 (279)
T PHA03411 185 G 185 (279)
T ss_pred c
Confidence 3
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.9e-05 Score=80.76 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.+...+.... .+++++|+++.+++.|++.+... ..+++++.+|..++....
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~------------ 111 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-GLKIDYRQTTAEELAAEH------------ 111 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-CCceEEEecCHHHhhhhc------------
Confidence 345789999999999988887753 58999999999999999887432 225788888887765332
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..+||+|++...-. .+.. ...+|+.+.+.|+|+|.+++....+.
T Consensus 112 --------------------~~~fD~Ii~~~~l~----~~~~------~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 112 --------------------PGQFDVVTCMEMLE----HVPD------PASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred --------------------CCCccEEEEhhHhh----ccCC------HHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 25799998732111 1111 26789999999999999998876544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.7e-05 Score=94.04 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=86.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC----------------CCCCeEEEEccHHHHHH
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----------------QDKSLKVHITDGIKFVR 606 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~----------------~~~rl~v~i~Dg~~~l~ 606 (772)
..+||.||+|.|+++..|...+|..+|++||++|.++++|++..... ..+|++++.+|..+.++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999998889999999999999998886321 12589999999987753
Q ss_pred hhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC----CCCC---------------cCCcCC
Q 004133 607 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS----SGMT---------------CPAADF 667 (772)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~----~g~s---------------~Pp~~f 667 (772)
.. +.+||+|+... +.-. ..|+ .|...+
T Consensus 199 ~~--------------------------------~~~fDlIVSNP--PYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL 244 (1082)
T PLN02672 199 DN--------------------------------NIELDRIVGCI--PQILNPNPEAMSKLVTENASEEFLYSLSNYCAL 244 (1082)
T ss_pred cc--------------------------------CCceEEEEECC--CcCCCcchhhcChhhhhccccccccccCccccc
Confidence 21 13589988622 1000 0110 011222
Q ss_pred Cc-----------HHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 668 VE-----------GSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 668 ~~-----------~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
.. ..++..+.+.|+|+|.+++++-.+..+
T Consensus 245 ~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 245 QGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 22 677888888999999999999655444
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.04 E-value=3e-05 Score=84.35 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....++|.||+|.|.++..+.+.+|..+++++|+ |.+++.|+++..- ...+|++++.+|..+. ..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~~----------- 213 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY----------- 213 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--CC-----------
Confidence 4557999999999999999999999999999998 7899999887521 1257899999997542 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+|+|++-- . +..-+. =.-..+|+.+.+.|+|||.+++-
T Consensus 214 ----------------------~~~D~v~~~~--~-----lh~~~~-~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 ----------------------PEADAVLFCR--I-----LYSANE-QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred ----------------------CCCCEEEeEh--h-----hhcCCh-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 2369887611 0 000000 01146899999999999998765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6e-05 Score=79.83 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=80.3
Q ss_pred CCeEEEEcCCCchhH----HHHHHcC------CCeEEEEeCCHHHHHHHHHHh-----c--------------cC--C--
Q 004133 69 PPQILVPGCGNSRLS----EHLYDAG------FHGITNVDFSKVVISDMLRRN-----V--------------RD--R-- 115 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls----~~La~~g------~~~V~gvDiS~~~I~~a~~~~-----~--------------~~--~-- 115 (772)
..+|.-.||++|.-. ..|.+.+ .-+|+++|+|..+|+.|+.-. . +. +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 679999999999644 3333332 136999999999999987321 0 00 0
Q ss_pred -------CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 116 -------SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 116 -------~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..+.|...|+.+.+ +..+.||+|+|..+|-++..+. ..++++.++..|+|||++++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYFd~~~-----q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYFDEET-----QERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEeeCHHH-----HHHHHHHHHHHhCCCCEEEEcc
Confidence 24778888888766 5667899999999999996543 6899999999999999998764
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.4e-05 Score=89.05 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=72.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHhc--cCCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 69 PPQILVPGCGNSRLSEHLYDAG-----FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g-----~~~V~gvDiS~~~I~~a~~~~~--~~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
+..|||+|||+|-++...++.+ ..+|++|+-++.++...+++.. .....++++.+|+++.. .....|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--lpekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--LPEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--HSS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--CCCceeEEEE
Confidence 4689999999999998777664 4579999999998877655522 23467999999999998 3459999997
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
-.+= .+.+.|- ....|....|.|||||+++
T Consensus 265 ElLG-sfg~nEl----~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNEL----SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTS----HHHHHHHGGGGEEEEEEEE
T ss_pred eccC-Ccccccc----CHHHHHHHHhhcCCCCEEe
Confidence 5543 3333231 5567888999999999886
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=85.61 Aligned_cols=45 Identities=36% Similarity=0.476 Sum_probs=38.6
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHHh
Q 004133 541 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 541 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 585 (772)
+.+.+|+.+|+|+| +|++.|.+.++ ..+|+++|+|+.+++.|++-
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 45689999999999 57888888765 46899999999999999974
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.5e-05 Score=79.60 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHhccCCC-Cc-EEEEeeccCcccc--cCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDRS-DM-RWRVMDMTSMQVF--MDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g--~~~V~gvDiS~~~I~~a~~~~~~~~~-~v-~f~~~D~~~l~~~--~~~sfDvVi 140 (772)
.+.+||||.||.|+........ + ..+|...|+|+..|+..++.....+. ++ +|.++|+.+...+ .+...++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5689999999999988776655 3 35799999999999999887765543 44 9999999985422 245679999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..|.++.+.+.+ .+...+..+.+.|.|||++|...
T Consensus 215 VsGL~ElF~Dn~----lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDND----LVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHH----HHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999887643 36778999999999999998775
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.8e-05 Score=77.27 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=95.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+-+|.||+|.|.....++...|+..+.+||+-..++..|-+...-..-++++++.+||.+++.....
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~------------ 116 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP------------ 116 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC------------
Confidence 35789999999999999999999999999999999999988877322223899999999999999761
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
+...|-|.+ +=+||..---=--..++.++|++.+++.|+|||.|-+= +.+..+.+.
T Consensus 117 ------------------~~sl~~I~i--~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a--TD~~~y~e~ 172 (227)
T COG0220 117 ------------------DGSLDKIYI--NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA--TDNEEYFEW 172 (227)
T ss_pred ------------------CCCeeEEEE--ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE--ecCHHHHHH
Confidence 347888887 33554211100013599999999999999999999853 455555444
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.6e-05 Score=83.49 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.++||-+=.=+|+.+.+.... ++ +|+.||++...+++|++++.+. ...+.+++++|+++|++....
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~--------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER--------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh---------
Confidence 589999999999887655544 34 9999999999999999999554 356799999999999999762
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+.+||+||+|--+=.-+..+. ....=--...+..+.++|+|||++++-..++
T Consensus 287 --------------------~g~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 287 --------------------RGEKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred --------------------cCCcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 3578999999642211110000 0000012456777888999999998755444
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.5e-05 Score=76.47 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=83.3
Q ss_pred ccCCCCeEEEEcccccHHHHHHHHhCCC------CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004133 539 SVGKSVKAVVIGLGAGLLPMFLHECMPF------VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 539 ~~~~~~~vLviGlG~G~l~~~L~~~~p~------~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
..+...++|.+++|+|-++--+.++.+. .+|+++||+|.|+.++++.- ++.++.++.++.+||.+. .
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L----p 172 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL----P 172 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC----C
Confidence 4566689999999999777767776665 69999999999999999887 888888999999999774 1
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+..||+..+-- .- -...-| ...|+.+.+.|+|||.|.+=
T Consensus 173 -----------------------------Fdd~s~D~yTiaf-GI---RN~th~------~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 173 -----------------------------FDDDSFDAYTIAF-GI---RNVTHI------QKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred -----------------------------CCCCcceeEEEec-ce---ecCCCH------HHHHHHHHHhcCCCcEEEEE
Confidence 1246788887621 11 111112 67899999999999988843
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.8e-05 Score=75.33 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=51.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...++|.||.|.|.++..+... ..++++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~ 71 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKF 71 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcC
Confidence 3468999999999999999887 35899999999999999999853 46899999999876
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.4e-05 Score=80.21 Aligned_cols=113 Identities=15% Similarity=0.018 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l 128 (772)
...++..++.. ....+|||+|+++|.-+..++.. + -.+|+.+|+++...+.|++.....+ .+++++.+|+.+.
T Consensus 67 ~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 67 EGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH
Confidence 33444444443 35679999999999999988875 2 2479999999999999988776543 5799999998773
Q ss_pred -cccc-----CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 129 -QVFM-----DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 129 -~~~~-----~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+.+. .++||+|+..+ - ...+..+++.+.++|+|||.+++-
T Consensus 144 L~~l~~~~~~~~~fD~iFiDa----d------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDA----D------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHhccccCCcccEEEecC----C------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 2111 36899998532 2 222678999999999999998763
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.7e-05 Score=78.58 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|.+...+.... .+++++|+++.+++.|++.+.-....++++..+|+.++....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------------- 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG------------- 109 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-------------
Confidence 46789999999999888777654 469999999999999999875322226888889988774331
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+||+|++.-.-. .+.. ...+|+.+.+.|+++|.+++....+
T Consensus 110 -------------------~~~~D~i~~~~~l~----~~~~------~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 110 -------------------AKSFDVVTCMEVLE----HVPD------PQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -------------------CCCccEEEehhHHH----hCCC------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 25799998732111 1111 2679999999999999998876544
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.6e-05 Score=79.08 Aligned_cols=121 Identities=20% Similarity=0.318 Sum_probs=83.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~ 134 (772)
..+.+.|... .....|-|+|||.+.++. .. ...|+..|+-. .+-.++.+|+.+.| ++|+
T Consensus 169 d~ii~~ik~r--~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a--------------~~~~V~~cDm~~vP-l~d~ 227 (325)
T KOG3045|consen 169 DVIIRKIKRR--PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA--------------VNERVIACDMRNVP-LEDE 227 (325)
T ss_pred HHHHHHHHhC--cCceEEEecccchhhhhh---cc-ccceeeeeeec--------------CCCceeeccccCCc-CccC
Confidence 3445555441 346789999999999886 22 34699999743 24467889999999 9999
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh-hhcccccc-cCCcEEEEEEc
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHAI 204 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~~ 204 (772)
+.|+++....|.. . . +..++.|+.|+|++||.+++........ ...+.+.+ ..|+.+....+
T Consensus 228 svDvaV~CLSLMg--t-n-----~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 228 SVDVAVFCLSLMG--T-N-----LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cccEEEeeHhhhc--c-c-----HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh
Confidence 9999886544422 1 1 7899999999999999999987553211 11233333 33666655554
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.1e-05 Score=79.18 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCeEEEEcccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 543 SVKAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~---p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
..+||.+|+|+|.++..+.+.. +..+|++||||+.++++|++.. +++.++.+|...+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~ 109 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTT 109 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcc
Confidence 5799999999999999888764 3569999999999999999764 3588999998754
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.96 E-value=2e-05 Score=82.87 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=91.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHH
Q 004133 23 GDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (772)
Q Consensus 23 ~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~ 102 (772)
..|....|-+.+|.... +...+ ..-.......+.+.+.. +...+.++||+|||+-.....-+..-+.+|+..|+++.
T Consensus 14 ~~FdP~~Yl~~yY~~~~-~~~~~-~~~~~~~L~~l~~~f~~-g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~ 90 (256)
T PF01234_consen 14 EEFDPRAYLDTYYSFPS-GDDAE-DEILLFFLKNLHETFSS-GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ 90 (256)
T ss_dssp HHB-HHHHHHHHHSTSS-S-CHH-HHHHHHHHHHHHHHHHT-SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH
T ss_pred hcCCHHHHHHHhcCCCc-cCccc-chhHHHHHHHHHHHhCc-cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh
Confidence 34666677777776442 11110 00001122233333432 12346799999999965543333335678999999999
Q ss_pred HHHHHHHHhccCC-----------------------------CCc-EEEEeeccCcccccC-----CCccEEEecccccc
Q 004133 103 VISDMLRRNVRDR-----------------------------SDM-RWRVMDMTSMQVFMD-----ETFDVILDKGGLDA 147 (772)
Q Consensus 103 ~I~~a~~~~~~~~-----------------------------~~v-~f~~~D~~~l~~~~~-----~sfDvVi~~~~l~~ 147 (772)
-++..++...... ..+ .++..|+++.+.+.. ..||+|++..+|++
T Consensus 91 N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~ 170 (256)
T PF01234_consen 91 NREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLES 170 (256)
T ss_dssp HHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHH
T ss_pred hHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHH
Confidence 9987765543211 013 366788888652332 25999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
...+. ....++++++.++|||||.|++....
T Consensus 171 a~~d~---~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 171 ACKDL---DEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp H-SSH---HHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HcCCH---HHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 86533 23889999999999999999998654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4e-05 Score=76.68 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=83.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHhccCC-----------CC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDR-----------SD 117 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g--~~~V~gvDiS~~~I~~a~~~~~~~~-----------~~ 117 (772)
.+...+.++|... ..|+.++||+|.|+|.++..++.. | +.+.+|||.-+..++.++++..+.. .+
T Consensus 67 ~mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 3444444554410 158999999999999999888754 3 3345999999999999987764322 46
Q ss_pred cEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 118 MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 118 v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+.++++|..... -+...||.|..... ..+..+++...|++||++++-.
T Consensus 146 l~ivvGDgr~g~-~e~a~YDaIhvGAa-------------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGY-AEQAPYDAIHVGAA-------------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccC-CccCCcceEEEccC-------------ccccHHHHHHhhccCCeEEEee
Confidence 889999999876 67889999987522 2356678888999999998754
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.9e-05 Score=79.95 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=73.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------------~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...+||++|+|.|--+.+|+.+ +..|++||++|..++.|.+.-++. ...+++++++|..++-...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 3469999999999999999886 358999999999999876555542 2357888899887751110
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...||.|+- . . .-+. -|+. .-..+++.+.+.|+|||.+++
T Consensus 111 -------------------------------~~~fD~i~D-~--~---~~~~-l~~~-~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 -------------------------------LGPVDAVYD-R--A---ALIA-LPEE-MRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -------------------------------CCCcCEEEe-c--h---hhcc-CCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 145888753 1 1 0011 1222 235699999999999996443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=83.96 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=72.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
+.+||.||+|.|..+.+|... ..+|++||+++.+++.|++...-. .-++++...|....- .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~~--~-------------- 181 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSAS--I-------------- 181 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhccc--c--------------
Confidence 458999999999999999875 369999999999999998876321 225788888764420 0
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..+||+|+.-..- +..++. .-..+++.+.+.|+|||++++
T Consensus 182 ------------------~~~fD~I~~~~vl------~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 ------------------QEEYDFILSTVVL------MFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ------------------cCCccEEEEcchh------hhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 2579999872100 000111 125789999999999998665
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.7e-05 Score=77.28 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=49.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 603 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~ 603 (772)
+.+.+||.||+|.|.+...|...+|..++++||+++.+++.|++++ ++++++.+|+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 4557899999999999999999888889999999999999999875 246788888654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0001 Score=68.42 Aligned_cols=102 Identities=27% Similarity=0.358 Sum_probs=73.6
Q ss_pred EEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeeccC--cccccC-CCccEEEeccc
Q 004133 72 ILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS--MQVFMD-ETFDVILDKGG 144 (772)
Q Consensus 72 ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~~~--v~f~~~D~~~--l~~~~~-~sfDvVi~~~~ 144 (772)
+||+|||+|... .+..... ..++++|+++.++..++..... ... +.+...|... ++ +.. ..||++ ....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP-FEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC-CCCCCceeEE-eeee
Confidence 999999999976 3333321 2689999999999885544422 222 6889999887 66 666 489999 4444
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
..+... ....+.++.++|+|+|.+++.......
T Consensus 128 ~~~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 128 VLHLLP-------PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred ehhcCC-------HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 433322 368999999999999999998776443
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.2e-05 Score=77.72 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=82.4
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccC-c
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTS-M 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~-l 128 (772)
.+.+.+..++... .-++.++||+-||+|.++.+.+.+|...|+.||.++.+++.++++...-.. .++.+++|+.. +
T Consensus 27 rvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 27 RVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred HHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 3444444444421 025799999999999999999999999999999999999999887754332 47888888654 2
Q ss_pred ccc--cCCCccEEEecccccccccCccchHHHHHHHHHHH--hccccCeEEEEEEcCc
Q 004133 129 QVF--MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLAE 182 (772)
Q Consensus 129 ~~~--~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~~ii~~~~~ 182 (772)
... ....||+|+..-....-. .+..+++.+. .+|+++|.+++-+...
T Consensus 106 ~~~~~~~~~fDiIflDPPY~~~~-------~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFLDPPYAKGL-------YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHCTS-EEEEEE--STTSCH-------HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HhhcccCCCceEEEECCCcccch-------HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 211 468999998644333211 0366777776 8999999998887554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00024 Score=77.39 Aligned_cols=174 Identities=15% Similarity=0.240 Sum_probs=102.6
Q ss_pred ccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--------CCCeEEEEeCCHHHHHHHHHHhccCC---
Q 004133 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNVRDR--- 115 (772)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--------g~~~V~gvDiS~~~I~~a~~~~~~~~--- 115 (772)
|-....+..++.+++.. .++.+|||++||+|.+...+.+. ...+++|+|+++.++..++-+..-..
T Consensus 28 ~~TP~~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp C---HHHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred eehHHHHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 44556788888888865 56778999999999998877662 33479999999999988765542222
Q ss_pred CCcEEEEeeccCccccc-CCCccEEEeccccccc--ccCc---cc---------hHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 116 SDMRWRVMDMTSMQVFM-DETFDVILDKGGLDAL--MEPE---LG---------HKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 116 ~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l~~l--~~~~---~~---------~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
....+...|....+.+. ...||+|+++..+... .... +. ...--.++..+.+.|++||++.++.-
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 23468888887655222 5789999987776544 1100 00 01123588999999999999877653
Q ss_pred Cch--------hhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCC
Q 004133 181 AES--------HVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 181 ~~~--------~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
..- .+++.++.. .+...+..++..-=.....+..+.+++|.+.
T Consensus 185 ~~~L~~~~~~~~iR~~ll~~---~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 185 NGFLFSSSSEKKIRKYLLEN---GYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp HHHHHGSTHHHHHHHHHHHH---EEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred chhhhccchHHHHHHHHHhh---chhhEEeecccceecccCcCceEEEEeeccc
Confidence 211 122223322 3444555565321123667788888888764
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00011 Score=81.78 Aligned_cols=122 Identities=15% Similarity=0.152 Sum_probs=77.1
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCc-cccc--------------C
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM-QVFM--------------D 133 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l-~~~~--------------~ 133 (772)
.+|||++||+|.++..+++. ...|+++|+++.+++.++++....+. +++|+++|+.+. +.+. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988775 55899999999999999887654433 799999999773 1011 1
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
..||+|+..-.-.- ...++++.+.+ |++ ++.++.....+.+.+.. +..+|.+.-....+
T Consensus 287 ~~~D~v~lDPPR~G---------~~~~~l~~l~~---~~~-ivyvSC~p~tlarDl~~-L~~gY~l~~v~~~D 345 (362)
T PRK05031 287 YNFSTIFVDPPRAG---------LDDETLKLVQA---YER-ILYISCNPETLCENLET-LSQTHKVERFALFD 345 (362)
T ss_pred CCCCEEEECCCCCC---------CcHHHHHHHHc---cCC-EEEEEeCHHHHHHHHHH-HcCCcEEEEEEEcc
Confidence 25898875333111 12455555544 544 55555554444433322 11256555444333
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=3e-05 Score=80.11 Aligned_cols=104 Identities=16% Similarity=0.075 Sum_probs=74.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------------~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...+||++|+|.|.-+.+|+.+ +.+|++||++|..++.|.+.-++. ...+++++++|..++-...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 3469999999999999999886 358999999999999876554443 2467889999987762110
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
...||.|+- .. .-+..||.. -..+++.+.++|+|||.++
T Consensus 114 -------------------------------~~~fd~v~D---~~---~~~~l~~~~--R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 -------------------------------LADVDAVYD---RA---ALIALPEEM--RERYVQQLAALLPAGCRGL 152 (218)
T ss_pred -------------------------------CCCeeEEEe---hH---hHhhCCHHH--HHHHHHHHHHHcCCCCeEE
Confidence 146888873 11 112223322 4789999999999998533
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00022 Score=77.38 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=75.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
+.+.+||.+|+|+|..+..|...++ ..++++||++++|++.|++...-. +.-++..+++|..+.+.-...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~-------- 133 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE-------- 133 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc--------
Confidence 3457899999999999998888876 579999999999999998876311 223466688997765332210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
.......+++.+. . .+.. ++.. ...||+.+++.|+|||.|++-+
T Consensus 134 --------------------~~~~~~~~~~~gs--~---~~~~-~~~e--~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 134 --------------------PAAGRRLGFFPGS--T---IGNF-TPEE--AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred --------------------cccCCeEEEEecc--c---ccCC-CHHH--HHHHHHHHHHhcCCCCEEEEec
Confidence 0011223333321 1 1111 1111 2579999999999999999655
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.2e-05 Score=72.00 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.+...++... . ++++||+++.+++. ..+.....+.... .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~-~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~--~------------- 73 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG-F-EVTGVDISPQMIEK----------RNVVFDNFDAQDP--P------------- 73 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT-S-EEEEEESSHHHHHH----------TTSEEEEEECHTH--H-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-C-EEEEEECCHHHHhh----------hhhhhhhhhhhhh--h-------------
Confidence 567899999999999999887764 3 99999999999998 1112222222111 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
.....||+|++- +.-..+.- -..+|+.+++.|+|||++++....+..
T Consensus 74 ------------------~~~~~fD~i~~~----~~l~~~~d------~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 74 ------------------FPDGSFDLIICN----DVLEHLPD------PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp ------------------CHSSSEEEEEEE----SSGGGSSH------HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred ------------------ccccchhhHhhH----HHHhhccc------HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 013689999972 11111211 378999999999999999999987753
|
... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=80.54 Aligned_cols=122 Identities=13% Similarity=0.141 Sum_probs=77.5
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc-c------c--cC------
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ-V------F--MD------ 133 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~-~------~--~~------ 133 (772)
.+|||++||+|.++..|++. ...|+|+|+++.+++.++++....+. +++|+++|+.+.- . + ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 47999999999999988876 45899999999999999887755443 6899999998742 0 0 01
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
..||+|+..-. ..+ ....+++.+.+ |+ .++.++.....+.+.+-... .+|.+......+
T Consensus 278 ~~~d~v~lDPP-------R~G--~~~~~l~~l~~---~~-~ivYvsC~p~tlaRDl~~L~-~~Y~l~~v~~~D 336 (353)
T TIGR02143 278 YNCSTIFVDPP-------RAG--LDPDTCKLVQA---YE-RILYISCNPETLKANLEQLS-ETHRVERFALFD 336 (353)
T ss_pred CCCCEEEECCC-------CCC--CcHHHHHHHHc---CC-cEEEEEcCHHHHHHHHHHHh-cCcEEEEEEEcc
Confidence 13788775322 111 12455555544 54 55556555555555433222 235555544433
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.9e-05 Score=79.65 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=72.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+++.||.|.|.++.-+.+.+|+++++++|+ |.|++.|++ .+|++++-+|-. ...
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f---~~~------------ 156 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF---DPL------------ 156 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT---TCC------------
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH---hhh------------
Confidence 4557899999999999999999999999999999 999999999 689999999865 232
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC--cEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~--Gilv~N 689 (772)
+. +|++++=--=.+ . |+. --...|++++..|+|| |.++|.
T Consensus 157 --------------------P~-~D~~~l~~vLh~----~--~d~--~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 --------------------PV-ADVYLLRHVLHD----W--SDE--DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --------------------SS-ESEEEEESSGGG----S---HH--HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --------------------cc-ccceeeehhhhh----c--chH--HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 23 999997110000 0 000 1256799999999988 877654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00017 Score=75.06 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|+|.++..|.+.+ ..+|++||+++.|++.|++.- ..+++|+.+. .
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l----p------------ 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL----P------------ 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC----C------------
Confidence 46799999999999999998886 469999999999999998741 2456776542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 683 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~ 683 (772)
..+.+||+|++-. .-..+.. -+..++.+++.|+|.
T Consensus 106 -----------------~~d~sfD~v~~~~----~l~~~~d------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 106 -----------------FRDKSFDVVMSSF----ALHASDN------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred -----------------CCCCCEEEEEecC----hhhccCC------HHHHHHHHHHHhcCc
Confidence 1247899999811 1111111 267999999999994
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.4e-06 Score=92.89 Aligned_cols=99 Identities=22% Similarity=0.288 Sum_probs=69.1
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCe--EEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~--V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
..+||+|||.|.++.+|.+++... +.--|..+..++.|.++- ...-+-.+--..+| |++++||+|.+..++..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----vpa~~~~~~s~rLP-fp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----VPAMIGVLGSQRLP-FPSNAFDMVHCSRCLIP 193 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----cchhhhhhcccccc-CCccchhhhhccccccc
Confidence 478999999999999999986421 111244445555554332 22222233345789 99999999999888765
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
....+ ..+|-++-|+|+|||+|+...
T Consensus 194 W~~~~------g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 194 WHPND------GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred chhcc------cceeehhhhhhccCceEEecC
Confidence 54432 358899999999999988764
|
; GO: 0008168 methyltransferase activity |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=80.42 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHH---HhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAE---DYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~---~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.++..+....+. .|++||+++.++..++ ++.+ .+.+++++.+|..++ .
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~l----p--------- 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQL----P--------- 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHC----C---------
Confidence 3478999999999999888887654 6999999999886432 3333 256799998886543 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
. ...||+|++= ....-+..| ..+|+.+++.|+|||.|++..
T Consensus 186 --------------------~-~~~FD~V~s~----~vl~H~~dp------~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 --------------------A-LKAFDTVFSM----GVLYHRRSP------LDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred --------------------C-cCCcCEEEEC----ChhhccCCH------HHHHHHHHHhcCCCcEEEEEE
Confidence 0 2569999961 000011112 679999999999999999864
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.8e-05 Score=87.27 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+++|+|||-|..+.+++..+...++|+|+++.-+..+....... .....++..|+.+++ |++++||.+....+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCcEEEEee
Confidence 567799999999999999998876567999999998887775544322 224567999999999 99999999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..|..+ ....++|++|+++|||++++..+.
T Consensus 188 ~~~~~~-------~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 188 VCHAPD-------LEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cccCCc-------HHHHHHHHhcccCCCceEEeHHHH
Confidence 999877 569999999999999999987655
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00036 Score=74.77 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=85.6
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CC
Q 004133 514 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QD 591 (772)
Q Consensus 514 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~ 591 (772)
||..--.+.++...+ +.++||.+=.=+|+...+.... +-.+|+.||++...+++|++.+.+. +.
T Consensus 108 FlDqR~nR~~v~~~~-------------~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~ 173 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-------------KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDL 173 (286)
T ss_dssp -GGGHHHHHHHHHHC-------------TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred cHHHHhhHHHHHHHc-------------CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 555666777775532 3479999999999888776543 3348999999999999999998443 34
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-Cc-
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VE- 669 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-~~- 669 (772)
++++++.+|+.+|+++... ..+||+||+|--+=. ...| +.
T Consensus 174 ~~~~~~~~Dvf~~l~~~~~------------------------------~~~fD~IIlDPPsF~--------k~~~~~~~ 215 (286)
T PF10672_consen 174 DRHRFIQGDVFKFLKRLKK------------------------------GGRFDLIILDPPSFA--------KSKFDLER 215 (286)
T ss_dssp TCEEEEES-HHHHHHHHHH------------------------------TT-EEEEEE--SSEE--------SSTCEHHH
T ss_pred cceEEEecCHHHHHHHHhc------------------------------CCCCCEEEECCCCCC--------CCHHHHHH
Confidence 6899999999999987641 358999999752211 1111 12
Q ss_pred --HHHHHHHHHccCCCcEEEEEecCC
Q 004133 670 --GSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 670 --~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
...+..+.++|+|||+|++-..+.
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 345777888899999987655433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00017 Score=72.86 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=77.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..++|.+++|+|+++..+..... .+|++||+|+..++++++.+... -.++++++.+|+.++++....
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~----------- 117 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK----------- 117 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-----------
Confidence 46899999999999988887754 38999999999999999887322 135799999999999866431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHH--ccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~--~L~~~Gilv~Nl~ 691 (772)
....||+|++|-.-. .-.....++.+.+ .|+++|++|+--.
T Consensus 118 ------------------~~~~~dvv~~DPPy~-----------~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 118 ------------------KPTFDNVIYLDPPFF-----------NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ------------------cCCCceEEEECcCCC-----------CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 123489999843111 1123455555543 5899999997653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00025 Score=71.80 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
.++..|+||||-.|.++..+++. |. ..|+++|+.| + ...+++.++++|+++-+ .+....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----~-----~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----M-----KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----c-----ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 57899999999999999999887 32 2499999988 2 33457999999999855 23445679
Q ss_pred EEEecccccccc----cCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 138 VILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 138 vVi~~~~l~~l~----~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+|++-..-..-- +......+...+++-+..+|+|||.|++-.|-...
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 999654431100 10001123667788888999999999998876543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00027 Score=73.61 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=75.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+.+||.||+|+|.++..|... .+..+|++||++|.+++.|++.... +++++++.|+-.. .. .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~l-~~-~------- 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDEL-VA-E------- 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---CCCeEEEEecccc-cc-c-------
Confidence 45679999999999988888754 3456999999999999999987642 3466666654332 11 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
+.+||+|++-. .-.- ++++. -..+|+.+.+.++ |.+++|-..+...
T Consensus 127 ------------------------~~~fD~V~~~~----~lhh--~~d~~--~~~~l~~~~r~~~--~~~~i~dl~~~~~ 172 (232)
T PRK06202 127 ------------------------GERFDVVTSNH----FLHH--LDDAE--VVRLLADSAALAR--RLVLHNDLIRSRL 172 (232)
T ss_pred ------------------------CCCccEEEECC----eeec--CChHH--HHHHHHHHHHhcC--eeEEEeccccCHH
Confidence 35799999821 1000 11111 2469999999887 6777777777653
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00011 Score=82.14 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=80.0
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 623 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 623 (772)
.+||.++.|.|.++..+....+..+|+++|+||..++.+++...+..-+.++++.+|+.+++.. .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~-------------- 123 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-E-------------- 123 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-c--------------
Confidence 5799999999999988877766558999999999999999988443334577999999998754 2
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 624 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.+||+|++|-+ |. | .+|+..+...++++|++.+-
T Consensus 124 ------------------~~fD~V~lDP~------Gs--~------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 124 ------------------RKFDVVDIDPF------GS--P------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------------------CCCCEEEECCC------CC--c------HHHHHHHHHHhcCCCEEEEE
Confidence 45999999754 11 2 67899988889999999975
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=82.83 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEE---
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVIL--- 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi--- 140 (772)
.++.+|||++||.|.-+.+++.. +-..|++.|+++.-++.++++..+.+ .++.+...|...+.....+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 58899999999999999998886 23469999999999999988776544 3678888898876423346799998
Q ss_pred -ecccccccccCcc----c-------hHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 141 -DKGGLDALMEPEL----G-------HKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 -~~~~l~~l~~~~~----~-------~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|.+.-..-.+++. . ...-.++|..+.++|||||+++.+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 3322111111110 0 012478999999999999999998876
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=78.84 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=52.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHh
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE 607 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~ 607 (772)
+.+||.+|+|.|.++..|... ..+|++||+++.+++.|++......-++++++.+|+.++...
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA 236 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh
Confidence 478999999999999999884 368999999999999999886221124799999999988643
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.9e-05 Score=84.86 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCeEEEEcccccHHHHHHHHhC----CCCcEEEEEcCHHHHHHHHHh---cCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~----p~~~i~~VEiDp~v~~vA~~~---Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
...|++||.|.|.|.++..+.. ...+|.+||.+|..+...++. -|+ +++++|+.+|..++ +.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v--~l------- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREV--EL------- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTS--CH-------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCC--CC-------
Confidence 4679999999999998887664 346999999999766555332 244 57899999998887 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
..++|+||.-.-.+- | -.+ +.++.|..+.+.|+|+|+++
T Consensus 256 -------------------------pekvDIIVSElLGsf---g----~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 -------------------------PEKVDIIVSELLGSF---G----DNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -------------------------SS-EEEEEE---BTT---B----TTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred -------------------------CCceeEEEEeccCCc---c----ccc-cCHHHHHHHHhhcCCCCEEe
Confidence 258999998664331 1 122 44788999999999999988
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.3e-05 Score=78.42 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------c-cc--CCCc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------V-FM--DETF 136 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~-~~--~~sf 136 (772)
++.++||+||++|.++..+.+++ ...|+|+|+.+. ...+.+.++++|+++.. . +. .+.|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999987 457999999884 12245667777776532 1 12 2689
Q ss_pred cEEEecccccccccCccc----hHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 137 DVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
|+|++.+..+.......+ ..+....+.-+...|+|||.|++-.+..++.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 999988855443321111 1235666667778899999999988876554
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0003 Score=73.06 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=65.5
Q ss_pred CCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEe
Q 004133 64 PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 64 ~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
...++.+.|||+|.|||.++..|.+.|. +|+++++.+.|+.+..++..... ..++++++|+.+.+ + ..||.+|+
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~--P~fd~cVs 129 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-L--PRFDGCVS 129 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-C--cccceeec
Confidence 3347899999999999999999999986 69999999999999988875443 47899999998876 3 47999997
Q ss_pred cccc
Q 004133 142 KGGL 145 (772)
Q Consensus 142 ~~~l 145 (772)
+-..
T Consensus 130 NlPy 133 (315)
T KOG0820|consen 130 NLPY 133 (315)
T ss_pred cCCc
Confidence 5543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=77.21 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCC-CccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDE-TFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~-sfDvVi 140 (772)
...+||-+|-|.|..+..+.+.. ..+|+.||+++.+++.+++-+.. ..++++++..|....-.-..+ .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999998874 57899999999999999765431 346899999999874312234 899998
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
....-..... . .-....+++.+++.|+|||++++-.
T Consensus 156 ~D~~dp~~~~-~--~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPA-P--NLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCG-G--GGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCc-c--cccCHHHHHHHHhhcCCCcEEEEEc
Confidence 5332211000 0 0113689999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00017 Score=82.28 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=78.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~----------- 358 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW----------- 358 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-----------
Confidence 34689999999999999988764 48999999999999999987432235799999999998765421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+..||+|++|.-- .| +..++++.+.+ |++++++.+
T Consensus 359 ------------------~~~~~D~vi~dPPr----~G--------~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 359 ------------------AGQIPDVLLLDPPR----KG--------CAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred ------------------cCCCCCEEEECcCC----CC--------CCHHHHHHHHh-cCCCEEEEE
Confidence 12469999995321 12 34788887664 889887665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=79.65 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=71.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v---A~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|+|.+...+....+. .|++||+++.++.. ++++.+ .+.++.+...|..+. .
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~l----p--------- 184 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQL----H--------- 184 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHC----C---------
Confidence 4579999999999988877776543 79999999999864 344443 346777777764332 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
....||+|++= ....-+..| ..+|+.+++.|+|||.|++...
T Consensus 185 ---------------------~~~~FD~V~s~----gvL~H~~dp------~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 ---------------------ELYAFDTVFSM----GVLYHRKSP------LEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ---------------------CCCCcCEEEEc----chhhccCCH------HHHHHHHHHhcCCCCEEEEEEE
Confidence 01469999861 100111112 5799999999999999998743
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=77.53 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...++|.+|+|+|+++..+... ..+++++|+|+.+++.|+..+ |+. .++++.+|+.+. .
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~---~i~~~~~D~~~l----~--------- 243 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIE---DFFVKRGDATKL----P--------- 243 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCC---CCeEEecchhcC----C---------
Confidence 4468999999999887665443 468999999999999999775 552 288999998653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC---CCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD---FVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~---f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|+.|.--+.. .+. ... -+-..+|+.+++.|+|||.+++-+...
T Consensus 244 --------------------~~~~~~D~Iv~dPPyg~~-~~~---~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 --------------------LSSESVDAIATDPPYGRS-TTA---AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred --------------------cccCCCCEEEECCCCcCc-ccc---cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 012579999996421111 000 111 124789999999999999999877544
|
This family is found exclusively in the Archaea. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=77.69 Aligned_cols=125 Identities=20% Similarity=0.225 Sum_probs=91.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC------C---------------------------------
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF------H--------------------------------- 92 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~------~--------------------------------- 92 (772)
.+...+..+-+. .++..++|+=||+|++.++.+..+. .
T Consensus 178 tLAaAil~lagw---~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 178 TLAAAILLLAGW---KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred HHHHHHHHHcCC---CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 344444444444 4567999999999999988877641 1
Q ss_pred -eEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccccccCc-cchHHHHHHHHHHHhc
Q 004133 93 -GITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRL 168 (772)
Q Consensus 93 -~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~-~~~~~~~~~l~ei~rv 168 (772)
.++|+|+++.+|+.|+.++...+. .++|.++|+.+++ -+-+.+|+||++....-=...+ .-..++..+.+.+++.
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~-~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLK-EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCC-CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 278999999999999888765543 5999999999987 3338999999977654322211 1123577888888899
Q ss_pred cccCeEEEEEEc
Q 004133 169 LKSGGKFVCLTL 180 (772)
Q Consensus 169 LkpGG~~ii~~~ 180 (772)
++-.+++++++.
T Consensus 334 ~~~ws~~v~tt~ 345 (381)
T COG0116 334 LAGWSRYVFTTS 345 (381)
T ss_pred hcCCceEEEEcc
Confidence 998889888874
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.9e-05 Score=73.99 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=84.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeE-EEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK-VHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~-v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+|.+|+|+|.--.|.-.. |..+||.+|-+|.|-++|.+-+.=.....+. ++++||.+. .+++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~l~----------- 142 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQLA----------- 142 (252)
T ss_pred CccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cccc-----------
Confidence 3456899999999876654332 6779999999999999999988433344455 889998774 2222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeC--CCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDV--DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~--~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
+.+||+|+.-+ .|-. .| ...|++++++|+|||.+++-=. -....
T Consensus 143 --------------------d~s~DtVV~TlvLCSve------~~------~k~L~e~~rlLRpgG~iifiEH--va~~y 188 (252)
T KOG4300|consen 143 --------------------DGSYDTVVCTLVLCSVE------DP------VKQLNEVRRLLRPGGRIIFIEH--VAGEY 188 (252)
T ss_pred --------------------cCCeeeEEEEEEEeccC------CH------HHHHHHHHHhcCCCcEEEEEec--ccccc
Confidence 47899998533 2221 12 7899999999999999886322 22222
Q ss_pred HHHHHHHHHhccc
Q 004133 699 DMVISRMKMVFNH 711 (772)
Q Consensus 699 ~~v~~~l~~vF~~ 711 (772)
......+++++..
T Consensus 189 ~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 189 GFWNRILQQVAEP 201 (252)
T ss_pred hHHHHHHHHHhch
Confidence 3334445566654
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00015 Score=81.12 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=80.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~ 129 (772)
.+...+.+.+... .++.+|||++||+|..+..++.. +...|+++|+++.+++.++++...++ .++++.++|+..+.
T Consensus 43 dl~~~v~~~~~~~--~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 43 DISVLVLRAFGPK--LPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred hHHHHHHHHHHhh--cCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 3444445554320 13468999999999999999775 55579999999999999987764433 35679999997753
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
...+.||+|+.... -. -..++....+.+++||.+++.
T Consensus 121 -~~~~~fD~V~lDP~----Gs-------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 121 -HEERKFDVVDIDPF----GS-------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -hhcCCCCEEEECCC----CC-------cHHHHHHHHHHhcCCCEEEEE
Confidence 11467999876431 11 246778877888999988877
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.4e-05 Score=79.92 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=67.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
.+...+...+.. .++..+||.+||+|..+..+++.. ...|+|+|.++.|++.+++++.. ..+++++++|+.++.
T Consensus 6 Vll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 6 VLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK 81 (296)
T ss_pred ccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence 444455556553 578899999999999999999873 35799999999999999888755 567999999999865
Q ss_pred cccCC---CccEEEecc
Q 004133 130 VFMDE---TFDVILDKG 143 (772)
Q Consensus 130 ~~~~~---sfDvVi~~~ 143 (772)
..... ++|.|+...
T Consensus 82 ~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 82 EVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHcCCCccCEEEECC
Confidence 22222 789777533
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.6e-05 Score=76.28 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+... ..+|++||++|.+++.|++.+... ..+++.++++|..+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------------
Confidence 35678999999999999998875 358999999999999999987432 224789999986543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..+||+|+. ++... .|+.. -..+++.+.+.+++++++.+
T Consensus 117 ---------------------~~~fD~ii~~~~l~~-------~~~~~--~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 ---------------------CGEFDIVVCMDVLIH-------YPASD--MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ---------------------CCCcCEEEEhhHHHh-------CCHHH--HHHHHHHHHHHhCCCEEEEE
Confidence 145999986 22111 01222 25578888888887666654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.8e-05 Score=77.91 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEEeeccCcc-cccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ-VFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~~D~~~l~-~~~~~sfDvVi~~ 142 (772)
+.+.+|||.+.|-|..+...+++|...|+-++-++.+++.|.-+--+.. ..++.+.+|+.+.- .|+|++||+|+-.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4589999999999999999999998789999999999987743221111 25799999998742 4889999999842
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..=..+.. + --..++.+|++|+|||||+++-.+
T Consensus 213 PPRfS~Ag-e---LYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 213 PPRFSLAG-E---LYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCccchhh-h---HhHHHHHHHHHHHcCcCCcEEEEe
Confidence 22111111 0 014688999999999999998654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=73.87 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++..|||+.||-|.++..++.. ....|+++|++|.+++.++++...+. ..+...++|+.++. +.+.||.|++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--CccccCEEEECC
Confidence 46899999999999999999984 34579999999999999987765443 35889999999987 378999988754
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
.-.. ..++..+.+++++||.+-
T Consensus 178 p~~~-----------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESS-----------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSG-----------GGGHHHHHHHEEEEEEEE
T ss_pred hHHH-----------HHHHHHHHHHhcCCcEEE
Confidence 3222 358888999999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=76.33 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=80.6
Q ss_pred CeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccC-----CCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~-----~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+||.+|-|.|..+.++.+.. ..+++.||+.+.+|+.+++.+... .++++.+..|..+.-.-..++||+|+...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999984 578999999999999998776432 36889999999875312234899999644
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+=. . .+. ..-.-..+++.+++.|+++|+++.-
T Consensus 158 tdp-~-gp~-~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V-GPA-EALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C-Ccc-cccCCHHHHHHHHHhcCCCcEEEEe
Confidence 322 1 110 0001368999999999999999987
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00026 Score=79.22 Aligned_cols=101 Identities=8% Similarity=0.073 Sum_probs=76.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.++..+... ..+|++||+|+..++.|++......-++++++.+|..+++....
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~------------- 298 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM------------- 298 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC-------------
Confidence 368999999999998888754 36899999999999999988733222479999999999875422
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..||+|++|- |..=+..++++.+.. ++|++++.+-.
T Consensus 299 -------------------~~~D~vi~DP------------Pr~G~~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 299 -------------------SAPELVLVNP------------PRRGIGKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred -------------------CCCCEEEECC------------CCCCCcHHHHHHHHh-cCCCeEEEEEe
Confidence 3499999962 222234777777754 78998887643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00047 Score=72.95 Aligned_cols=96 Identities=13% Similarity=0.236 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~-----~~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
..+.+||-+|.|.|..+.++.+..- +|+.|||.+.+++.+++-+. -..|+++++.. +. . -..++||+||.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~-~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--D-LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--h-ccCCcCCEEEE
Confidence 3568999999999999999999864 79999999999998876331 23456776642 11 1 12468999996
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
-.+ .+ ..+++.++|.|+|||.++.-+
T Consensus 146 Ds~----~~--------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 146 LQE----PD--------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCC----CC--------hHHHHHHHHhcCCCcEEEECC
Confidence 543 22 367899999999999999853
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0004 Score=72.22 Aligned_cols=124 Identities=16% Similarity=0.242 Sum_probs=83.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEc----cHHHHHHhhcccCcccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHIT----DGIKFVREMKSSSATDE 616 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~----Dg~~~l~~~~~~~~~~~ 616 (772)
++..+|.+|+|+|+++.++.+.+|..+|++||.+++.+.+|.+... +.-..++.|+.- |...- .
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~---~-------- 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE---H-------- 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc---c--------
Confidence 3447999999999999999999999999999999999999998861 223567777743 22111 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeC--------CCCCCCCCCCcCCcCCC--------cHHHHHHHHHcc
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV--------DSPDSSSGMTCPAADFV--------EGSFLLTVKDAL 680 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~--------~~~d~~~g~s~Pp~~f~--------~~~fl~~~~~~L 680 (772)
.....++|+|+..- -.-+++.+..-|+.++. -..++..+.+.|
T Consensus 217 ---------------------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 217 ---------------------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred ---------------------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 01136788887521 00112223333333332 245778888999
Q ss_pred CCCcEEEEEecCC--ChhH
Q 004133 681 SEQGLFIVNLVSR--SQAT 697 (772)
Q Consensus 681 ~~~Gilv~Nl~~~--~~~~ 697 (772)
.|||.+.+++..+ ++..
T Consensus 276 q~gg~~~le~~~~~~~~~l 294 (328)
T KOG2904|consen 276 QPGGFEQLELVERKEHSYL 294 (328)
T ss_pred ccCCeEEEEecccccCcHH
Confidence 9999999999844 4444
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00028 Score=76.89 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CC--CcEEEE-eeccCcc-c--ccCCCccEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RS--DMRWRV-MDMTSMQ-V--FMDETFDVI 139 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~--~v~f~~-~D~~~l~-~--~~~~sfDvV 139 (772)
++.++||||||+|.+...++.. ...+++|+|+++.+++.|+++.... .. .+++.. .|..++. . .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4689999999999888777665 2247999999999999998877554 22 466643 3443322 0 246789999
Q ss_pred Eecccccccc
Q 004133 140 LDKGGLDALM 149 (772)
Q Consensus 140 i~~~~l~~l~ 149 (772)
+++--++.-.
T Consensus 194 vcNPPf~~s~ 203 (321)
T PRK11727 194 LCNPPFHASA 203 (321)
T ss_pred EeCCCCcCcc
Confidence 9998877543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00033 Score=80.24 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.....
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~----------- 363 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW----------- 363 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh-----------
Confidence 34689999999999999998875 58999999999999999887322224699999999988744220
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....||+|++|. + ..|+ .+.++.+.+ |++++++.+-.
T Consensus 364 ------------------~~~~fD~Vi~dP--P--r~g~---------~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 364 ------------------ALGGFDKVLLDP--P--RAGA---------AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ------------------hcCCCCEEEECc--C--CcCh---------HHHHHHHHh-cCCCeEEEEEe
Confidence 124699999953 1 1122 456666655 68899877654
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00038 Score=69.94 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=96.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+..|||-||.|.|....|+++.-|. +=..+|..|.|++--|++ |-.+-+++.+..|-=.+.+.++.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~-gw~ek~nViil~g~WeDvl~~L~----------- 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDW-GWREKENVIILEGRWEDVLNTLP----------- 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhc-ccccccceEEEecchHhhhcccc-----------
Confidence 46689999999999999999999776 677899999999998887 55566777777775555666654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE-EEecCCChhHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI-VNLVSRSQATKD 699 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv-~Nl~~~~~~~~~ 699 (772)
++.||=|+.|.++.-+.. ..+|.+.+-++|+|+|+|. +|..+-+..+..
T Consensus 167 --------------------d~~FDGI~yDTy~e~yEd----------l~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~ 216 (271)
T KOG1709|consen 167 --------------------DKHFDGIYYDTYSELYED----------LRHFHQHVVRLLKPEGVFSYFNGLGADNLMFY 216 (271)
T ss_pred --------------------ccCcceeEeechhhHHHH----------HHHHHHHHhhhcCCCceEEEecCcccchhhhh
Confidence 466999999998763211 3778999999999999998 688777665433
Q ss_pred HHHHHHHHhccceEEEee
Q 004133 700 MVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 700 ~v~~~l~~vF~~v~~~~~ 717 (772)
. ++..+..+++
T Consensus 217 ~-------vy~~lV~iev 227 (271)
T KOG1709|consen 217 D-------VYKILVMIEV 227 (271)
T ss_pred h-------hhheeEEEEe
Confidence 2 4555555544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00044 Score=75.34 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=50.8
Q ss_pred cCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEE-ccHHHH
Q 004133 540 VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHI-TDGIKF 604 (772)
Q Consensus 540 ~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i-~Dg~~~ 604 (772)
.+...++|.||+|+|++...|....+..+++++||||..++.|++..... -..+++++. .|.-.+
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i 179 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI 179 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh
Confidence 35678999999999977777777777889999999999999999988543 245788865 344333
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.62 E-value=3.7e-05 Score=69.81 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=48.4
Q ss_pred EEEcccccHHHHHHHHhCCCC---cEEEEEcCH---HHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 547 VVIGLGAGLLPMFLHECMPFV---GIEAVELDL---TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 547 LviGlG~G~l~~~L~~~~p~~---~i~~VEiDp---~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
|.||...|..+.++...++.. ++.+||.++ ..-++.++ .++ .++++++.+|..+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~--~~~~~~~~g~s~~~l~~~~----------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL--SDRVEFIQGDSPDFLPSLP----------- 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHH-----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC--CCeEEEEEcCcHHHHHHcC-----------
Confidence 468888887777777665543 699999999 45555544 343 4679999999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..++|+|++|.+.... .....|+.+..+|+|||++++.
T Consensus 67 --------------------~~~~dli~iDg~H~~~-----------~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 67 --------------------DGPIDLIFIDGDHSYE-----------AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --------------------H--EEEEEEES---HH-----------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred --------------------CCCEEEEEECCCCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence 2679999999864321 2366788999999999999975
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=75.23 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=73.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+-++.+|+|.|-.+..++.++ -+|.++|++++|+++|++++... .+-..+..-+|+++++.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--------------- 96 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--------------- 96 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC---------------
Confidence 3478999999998888999986 47999999999999999999643 11122333333333321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-CCcHHHHHHHHHccCCCc-EEEEEecC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKDALSEQG-LFIVNLVS 692 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~-f~~~~fl~~~~~~L~~~G-ilv~Nl~~ 692 (772)
...+.|+|++ .+ ..+ |--++|++.+++.|+++| ++++....
T Consensus 97 ------------------~e~SVDlI~~----Aq--------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 97 ------------------GEESVDLITA----AQ--------AVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ------------------CCcceeeehh----hh--------hHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 1367999986 21 122 335889999999997755 88887765
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00037 Score=71.28 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc----------cCCCCcEEEEeeccCcccccC--
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV----------RDRSDMRWRVMDMTSMQVFMD-- 133 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~----------~~~~~v~f~~~D~~~l~~~~~-- 133 (772)
.+++.++|||||.|......+-. ++...+||++.+...+.|..... ....++++..+|+.+.+ +..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~-~~~~~ 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD-FVKDI 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH-HHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH-hHhhh
Confidence 67899999999999998776654 88789999999988876653211 11236788889988754 221
Q ss_pred -CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 134 -ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 134 -~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
..-|+|+++.+.. +++ +...|.++..-||+|-++|..
T Consensus 120 ~s~AdvVf~Nn~~F---~~~-----l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTCF---DPD-----LNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TTT----HH-----HHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEecccc---CHH-----HHHHHHHHHhcCCCCCEEEEC
Confidence 3469999988653 212 556678888899999887754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00025 Score=71.30 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=78.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...++|.+=.|+|++..-..... ..+|+.||.|+..+.+.++... +...++.+++.+|+..++.....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------- 110 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------- 110 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH----------
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc----------
Confidence 35789999999999987554442 3499999999999999998872 22245799999999999987631
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC--cHHHHHHHH--HccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSFLLTVK--DALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~--~~~fl~~~~--~~L~~~Gilv~Nl~~~ 693 (772)
...+||+|++|- |-..- -.+.++.+. ..|+++|++++-...+
T Consensus 111 -------------------~~~~fDiIflDP------------PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 -------------------KGEKFDIIFLDP------------PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -------------------CTS-EEEEEE--------------STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred -------------------cCCCceEEEECC------------CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 147899999952 33222 266777776 7889999999877554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00034 Score=77.93 Aligned_cols=101 Identities=14% Similarity=0.197 Sum_probs=82.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
+.+||.+..|.|....-.....++ .+|+++|++|..++.+++...+..-+.++++.+|+..++....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~------------ 112 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN------------ 112 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC------------
Confidence 368999999999888877666433 4899999999999999998855433468999999999987643
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.+||+|++|-+.. | ..|+..+.+.++++|++.+-
T Consensus 113 --------------------~~fDvIdlDPfGs--------~------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 113 --------------------RKFHVIDIDPFGT--------P------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --------------------CCCCEEEeCCCCC--------c------HHHHHHHHHhcccCCEEEEE
Confidence 5699999976432 2 57999999999999999975
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00033 Score=73.66 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=69.6
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~ 132 (772)
+...+...... .+++.|||||+|.|.++..|++++. .|+++++++.+++..+++.. ...+++.+.+|+.+.+ ++
T Consensus 18 v~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d-~~ 91 (259)
T COG0030 18 VIDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFD-FP 91 (259)
T ss_pred HHHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCc-ch
Confidence 34445555544 5689999999999999999999976 59999999999999987764 4568999999999988 66
Q ss_pred CC-CccEEEecccc
Q 004133 133 DE-TFDVILDKGGL 145 (772)
Q Consensus 133 ~~-sfDvVi~~~~l 145 (772)
.- .++.|+++--.
T Consensus 92 ~l~~~~~vVaNlPY 105 (259)
T COG0030 92 SLAQPYKVVANLPY 105 (259)
T ss_pred hhcCCCEEEEcCCC
Confidence 53 67888875543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00022 Score=75.78 Aligned_cols=147 Identities=14% Similarity=0.214 Sum_probs=77.2
Q ss_pred CCCeEEEEccccc-HHHHHHH-HhCCCCcEEEEEcCHHHHHHHHHhcC--CCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAG-LLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G-~l~~~L~-~~~p~~~i~~VEiDp~v~~vA~~~Fg--~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.|.+|+.||.|.= ..+.+|+ .+.+...|+.+|+||+.++.|++-.+ +.-+.+++++.+|+.+.-.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--------- 190 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--------- 190 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---------
Confidence 5679999999854 4444444 45677899999999999999987654 112789999999987653222
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
..||+|++-+--+ |..- --.+.|+.+.+.++||.++++=-...-..+
T Consensus 191 ------------------------~~~DvV~lAalVg-----~~~e----~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~ 237 (276)
T PF03059_consen 191 ------------------------KEYDVVFLAALVG-----MDAE----PKEEILEHLAKHMAPGARLVVRSAHGLRSF 237 (276)
T ss_dssp ---------------------------SEEEE-TT-S-------------SHHHHHHHHHHHS-TTSEEEEEE--GGGGG
T ss_pred ------------------------ccCCEEEEhhhcc-----cccc----hHHHHHHHHHhhCCCCcEEEEecchhhHHH
Confidence 4699999954333 2111 237899999999999999997532222222
Q ss_pred HHHHHH--HHHHhccceEEEeecC-CceEEEEEecCC
Q 004133 698 KDMVIS--RMKMVFNHLFCLQLEE-DVNLVLFGLSSE 731 (772)
Q Consensus 698 ~~~v~~--~l~~vF~~v~~~~~~~-~~N~vl~a~~~~ 731 (772)
....++ .++ -|..+..++..+ =+|.|+|+.+..
T Consensus 238 LYp~vd~~~l~-gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 238 LYPVVDPEDLR-GFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp SS----TGGGT-TEEEEEEE---TT---EEEEE----
T ss_pred cCCCCChHHCC-CeEEEEEECCCCCceeEEEEEEecc
Confidence 221121 122 566555555444 479999998754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00023 Score=71.76 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
++.++|.||+|.|--+.||+... ..|++||+++.-++.+++.-.- ++-.++....|--++ .
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~----~------------ 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDF----D------------ 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCB----S------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhc----c------------
Confidence 56899999999999999999984 5899999999988877665421 112378888874332 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC-------
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------- 694 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~------- 694 (772)
-...||+|+..+-- +-.+++.+ +..++.+++.++|||++++......
T Consensus 91 ------------------~~~~yD~I~st~v~------~fL~~~~~--~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~ 144 (192)
T PF03848_consen 91 ------------------FPEEYDFIVSTVVF------MFLQRELR--PQIIENMKAATKPGGYNLIVTFMETPDYPCPS 144 (192)
T ss_dssp -------------------TTTEEEEEEESSG------GGS-GGGH--HHHHHHHHHTEEEEEEEEEEEEB--SSS--SS
T ss_pred ------------------ccCCcCEEEEEEEe------ccCCHHHH--HHHHHHHHhhcCCcEEEEEEEecccCCCCCCC
Confidence 12579999864311 22233333 7789999999999999888653221
Q ss_pred -hhHHHHHHHHHHHhccceEEEe
Q 004133 695 -QATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 695 -~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
.++.- --..|+..|...-.+.
T Consensus 145 ~~~f~~-~~~EL~~~y~dW~il~ 166 (192)
T PF03848_consen 145 PFPFLL-KPGELREYYADWEILK 166 (192)
T ss_dssp --S--B--TTHHHHHTTTSEEEE
T ss_pred CCCccc-CHHHHHHHhCCCeEEE
Confidence 11111 1256777887644333
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=65.92 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=94.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~ 129 (772)
.++..+..++... .-.+.++||+-+|+|.++.+.+.+|...++.||.+..++...+++...-. .++.++.+|+...-
T Consensus 28 rVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 3344444444320 02679999999999999999999999899999999999999988775544 57889999998531
Q ss_pred -ccc-CCCccEEEecccccccccCccchHHHHHHHHH--HHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcC
Q 004133 130 -VFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSE--VKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 205 (772)
Q Consensus 130 -~~~-~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~e--i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~ 205 (772)
... .+.||+|+..-.+..=.-+ ....+.. -..+|+|+|.++|-.-....+ .....+|.+.-+..+
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~------~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~-----~~~~~~~~~~r~k~y 175 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLD------KELALLLLEENGWLKPGALIVVEHDKDVEL-----PELPANFELHREKKY 175 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhh------HHHHHHHHHhcCCcCCCcEEEEEeCCCcCc-----cccCCCeEEEEEeec
Confidence 011 2259999976555411100 1223333 457899999999886543211 122335666555544
Q ss_pred C
Q 004133 206 Q 206 (772)
Q Consensus 206 ~ 206 (772)
+
T Consensus 176 G 176 (187)
T COG0742 176 G 176 (187)
T ss_pred C
Confidence 4
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=67.74 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=93.6
Q ss_pred EEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC-cccccCCCccEEEecccccc
Q 004133 72 ILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-MQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 72 ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~-l~~~~~~sfDvVi~~~~l~~ 147 (772)
|.|+||-.|.++.+|.+.|. ..++++|+++.-++.|++.....+ ..+++..+|-.+ ++ +.+..|.|+..|+=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~--~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK--PGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC--CCCCCCEEEEecCCHH
Confidence 68999999999999999975 469999999999999998876554 368999999654 43 3344799988886655
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCC
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
+ +..+|+.....++....|++.........+.++.. .+|.+.-..+-.. ....|-+..+.+...
T Consensus 79 l---------I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~--~gf~I~~E~lv~e----~~~~YeIi~~~~~~~ 142 (205)
T PF04816_consen 79 L---------IIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE--NGFEIIDEDLVEE----NGRFYEIIVAERGEE 142 (205)
T ss_dssp H---------HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH--TTEEEEEEEEEEE----TTEEEEEEEEEESSS
T ss_pred H---------HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH--CCCEEEEeEEEeE----CCEEEEEEEEEeCCC
Confidence 4 66889988888887778888877766655544333 3788887776532 224445555555443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.001 Score=70.72 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=87.5
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
...+...+.+.++. .++..|||+|+|.|.++..|.+.+ .+++++|+++.+++..+++.. ..++++++.+|+.++.
T Consensus 15 ~~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccc
Confidence 34666777777765 578999999999999999999998 689999999999999988764 5678999999999987
Q ss_pred cccC---CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccc
Q 004133 130 VFMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 191 (772)
Q Consensus 130 ~~~~---~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~ 191 (772)
..+ .....|+++-.. ++ ...++..+...-+ -|+.-++.+.|..+.+.+..
T Consensus 90 -~~~~~~~~~~~vv~NlPy-~i---------s~~il~~ll~~~~-~g~~~~~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 90 -LYDLLKNQPLLVVGNLPY-NI---------SSPILRKLLELYR-FGRVRMVLMVQKEVAERLLA 142 (262)
T ss_dssp -GGGHCSSSEEEEEEEETG-TG---------HHHHHHHHHHHGG-GCEEEEEEEEEHHHHHHHHT
T ss_pred -cHHhhcCCceEEEEEecc-cc---------hHHHHHHHhhccc-ccccceEEEEehhhhhhccC
Confidence 443 344566665433 22 2345555555333 34444444445555555544
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00078 Score=71.59 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=76.9
Q ss_pred ccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhH-HHHHHc-CC-CeEEEEeCCHHHHHHHHHHhcc---CCC
Q 004133 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS-EHLYDA-GF-HGITNVDFSKVVISDMLRRNVR---DRS 116 (772)
Q Consensus 43 ~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls-~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~---~~~ 116 (772)
.|.+|..|..+...=...+.......+.+|+=||||.=-++ ..|++. +. ..|+|+|+++.+++.+++.... -..
T Consensus 95 ~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 95 SFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp TSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 35567777766655444554421123459999999987777 444443 32 3699999999999999776541 245
Q ss_pred CcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 117 DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 117 ~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++|+++|..+.+ ..-..||+|+.......-..+ ..++|..+.+.++||.++++-+
T Consensus 175 ~m~f~~~d~~~~~-~dl~~~DvV~lAalVg~~~e~------K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 175 RMSFITADVLDVT-YDLKEYDVVFLAALVGMDAEP------KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp SEEEEES-GGGG--GG----SEEEE-TT-S----S------HHHHHHHHHHHS-TTSEEEEEE
T ss_pred CeEEEecchhccc-cccccCCEEEEhhhcccccch------HHHHHHHHHhhCCCCcEEEEec
Confidence 7999999998876 555789999865544322222 5799999999999999988874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00063 Score=75.53 Aligned_cols=134 Identities=14% Similarity=0.213 Sum_probs=79.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV 130 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~ 130 (772)
.+...+.++++. .++ +|||+-||.|.++..|++.. .+|+|||+++.+++.|++++..++ .+++|.++++.++..
T Consensus 184 ~l~~~~~~~l~~---~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 184 KLYEQALEWLDL---SKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCC
T ss_pred HHHHHHHHHhhc---CCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhH
Confidence 334445556653 334 89999999999999998874 579999999999999988876544 479999988765420
Q ss_pred ---------------ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccC
Q 004133 131 ---------------FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF 195 (772)
Q Consensus 131 ---------------~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~ 195 (772)
.....+|+|+.. +|..+. -..+++.+.+ + .+++.++.....+.+.+-. +..
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilD-------PPR~G~--~~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~~-L~~ 324 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILD-------PPRAGL--DEKVIELIKK---L-KRIVYVSCNPATLARDLKI-LKE 324 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE----------TT-S--CHHHHHHHHH---S-SEEEEEES-HHHHHHHHHH-HHC
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEc-------CCCCCc--hHHHHHHHhc---C-CeEEEEECCHHHHHHHHHH-Hhh
Confidence 112357877531 221111 1234444433 2 4788888776666554432 223
Q ss_pred CcEEEEEEc
Q 004133 196 GWKMSVHAI 204 (772)
Q Consensus 196 ~w~~~~~~~ 204 (772)
+|.+.....
T Consensus 325 ~y~~~~v~~ 333 (352)
T PF05958_consen 325 GYKLEKVQP 333 (352)
T ss_dssp CEEEEEEEE
T ss_pred cCEEEEEEE
Confidence 666554443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=6.9e-05 Score=75.83 Aligned_cols=103 Identities=18% Similarity=0.342 Sum_probs=80.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+.-.++|.||+|+|...--|+.+. .++++|||+..|++.|.+.=.+ + ++.++|+..|++...
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y---D--~L~~Aea~~Fl~~~~----------- 185 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY---D--TLYVAEAVLFLEDLT----------- 185 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch---H--HHHHHHHHHHhhhcc-----------
Confidence 446789999999999988888875 4799999999999999887655 2 567789999988654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
+.+||+|.. ||.. +.+.+ +.++-.+...|+|||+|++.+-.
T Consensus 186 --------------------~er~DLi~AaDVl~--YlG~L---------e~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 186 --------------------QERFDLIVAADVLP--YLGAL---------EGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred --------------------CCcccchhhhhHHH--hhcch---------hhHHHHHHHhcCCCceEEEEecc
Confidence 478999964 3321 11222 67888999999999999998743
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=71.13 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~ 604 (772)
...+||.||.|.|.++..|.... .+|++||+|+.+++.+++.+... ..++++++.+|+.++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 44689999999999999998864 47999999999999999988432 246899999999875
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00087 Score=73.08 Aligned_cols=59 Identities=20% Similarity=0.088 Sum_probs=47.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-----CCCCeEEEEccHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGI 602 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-----~~~rl~v~i~Dg~ 602 (772)
...+||.||+|+|.++..|... +.+|++||+++.|++.|++.+... ...+++++.+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3569999999999999888876 358999999999999999886321 1346788888853
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00044 Score=69.16 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
+...|||.||+|.|.|..+|.+. .+++..+||+|++-+..|.+. | +.|+.+|.-+-|....
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-G------v~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-G------VSVIQGDLDEGLADFP 72 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-C------CCEEECCHHHhHhhCC
Confidence 34589999999999999999997 578999999999988888665 3 5899999988877755
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00045 Score=74.74 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=84.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l 148 (772)
-...+|+|.|.|+.+..+.. -|.+|-++++....+..+...+. +.++.+-+|+.+-. | +-|+|+.+++|+++
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~~--P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQDT--P--KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc---CCcceecccccccC--C--CcCeEEEEeecccC
Confidence 47899999999999999988 57679999999988887755552 55899999998753 3 34699999999999
Q ss_pred ccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 149 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 149 ~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+.+ ..++|++++..|+|||.+++....
T Consensus 250 tDed-----cvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 250 TDED-----CVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred ChHH-----HHHHHHHHHHhCCCCCEEEEEecc
Confidence 8765 899999999999999999998763
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=74.20 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=53.4
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhh
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREM 608 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~ 608 (772)
.++|.+++|.|+++..|.... .+|++||+++.+++.|++......-++++++.+|+.++++..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAM 270 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 469999999999999888875 389999999999999999873322247999999999998764
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=72.56 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++..|||+-||-|.++..++..|...|+++|++|.+++.++++...++. .+..+++|+.... ..-+.||-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hccccCCEEEeCCC
Confidence 35899999999999999999999876699999999999999887754432 4889999999987 44488999997654
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
-. ...++..+.+.+++||++-+..+.++..
T Consensus 266 ~~-----------a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 KS-----------AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred Cc-----------chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 32 2478888899999999999998887654
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00091 Score=68.25 Aligned_cols=140 Identities=20% Similarity=0.222 Sum_probs=96.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCH----HHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDL----TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp----~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
....+||-+|...|+..+++..... ...|.+||..| .++.+|++.- ++--+++||..--+-..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~------NIiPIl~DAr~P~~Y~~------ 139 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP------NIIPILEDARHPEKYRM------ 139 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST------TEEEEES-TTSGGGGTT------
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC------ceeeeeccCCChHHhhc------
Confidence 3457999999999999999999875 66999999999 7788888764 46778999975322211
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC--
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR-- 693 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~-- 693 (772)
--..+|+|+.|+..++. .+-+..+++..|++||.+++-+-++
T Consensus 140 ------------------------lv~~VDvI~~DVaQp~Q------------a~I~~~Na~~fLk~gG~~~i~iKa~si 183 (229)
T PF01269_consen 140 ------------------------LVEMVDVIFQDVAQPDQ------------ARIAALNARHFLKPGGHLIISIKARSI 183 (229)
T ss_dssp ------------------------TS--EEEEEEE-SSTTH------------HHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred ------------------------ccccccEEEecCCChHH------------HHHHHHHHHhhccCCcEEEEEEecCcc
Confidence 12579999999976652 2678889999999999888765332
Q ss_pred -----ChhHHHHHHHHHHHh-ccceEEEee--cCCceEEEEEe
Q 004133 694 -----SQATKDMVISRMKMV-FNHLFCLQL--EEDVNLVLFGL 728 (772)
Q Consensus 694 -----~~~~~~~v~~~l~~v-F~~v~~~~~--~~~~N~vl~a~ 728 (772)
..+.+...+++|++. |.-+-.+.+ -+..+.+++|.
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 234556678888874 764444444 34455666654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0007 Score=66.45 Aligned_cols=130 Identities=20% Similarity=0.343 Sum_probs=82.2
Q ss_pred CCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|+|-|.+..-|++. |+. .+++||.++..+++|+.-- |+ ++.+++.+.|..+= +
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~--~---------- 131 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDP--D---------- 131 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCC--c----------
Confidence 3449999999999887766654 333 6999999999999997544 44 34488888886542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEE----EeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILI----IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii----vD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
....+||+|+ .|+-+--+.. |...+ .-++..+.+.|+|+|+|++--.
T Consensus 132 ---------------------~~~~qfdlvlDKGT~DAisLs~d~----~~~r~--~~Y~d~v~~ll~~~gifvItSC-- 182 (227)
T KOG1271|consen 132 ---------------------FLSGQFDLVLDKGTLDAISLSPDG----PVGRL--VVYLDSVEKLLSPGGIFVITSC-- 182 (227)
T ss_pred ---------------------ccccceeEEeecCceeeeecCCCC----cccce--eeehhhHhhccCCCcEEEEEec--
Confidence 1136688876 2322111000 11111 4578889999999999998542
Q ss_pred ChhHHHHHHHHHHHh-ccceEEEe
Q 004133 694 SQATKDMVISRMKMV-FNHLFCLQ 716 (772)
Q Consensus 694 ~~~~~~~v~~~l~~v-F~~v~~~~ 716 (772)
.-..+++++.+..- |..++.++
T Consensus 183 -N~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 183 -NFTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred -CccHHHHHHHHhcCCeEEEEeec
Confidence 23345556665544 54444443
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=73.40 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=53.4
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHh
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE 607 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~ 607 (772)
.++|.+|+|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 469999999999999999886 38999999999999999988443334699999999999865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=65.83 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=86.5
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|......+...+..-++....+++.+||-+|..+|....++.+. | -..|++|++|+...+.....+ +.++|+--+..
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-~~R~NIiPIl~ 129 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-KKRPNIIPILE 129 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-HHSTTEEEEES
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-ccCCceeeeec
Confidence 76666788887877666444578999999999999999999886 4 346999999998887775444 56789999999
Q ss_pred eccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 124 DMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 124 D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+..... ..-+..|+|+..-. . +...+-+..++...||+||.+++..
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa----Q-----p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA----Q-----PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S----S-----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCC----C-----hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9987541 22357888875321 1 1226778888899999999998764
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00058 Score=76.11 Aligned_cols=100 Identities=8% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
+.+|||+.||+|..+..++.. |...|+++|+++.+++.++++...... ++++.+.|+..+-......||+|.... +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999987 677899999999999999887754433 578999999876412236799987533 2
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
-. -..+++.+.+.+++||.+++..
T Consensus 124 ---Gs-------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GT-------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CC-------cHHHHHHHHHhcccCCEEEEEe
Confidence 11 1368999999999999887763
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00033 Score=71.32 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=67.8
Q ss_pred CCCCeEEEEcccccHHHHH-HHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHH-HHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMF-LHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-KFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~-L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~-~~l~~~~~~~~~~~~~ 618 (772)
....++|..|.|.|-.+.- |...+ -+|+.||..+..++.|+++++- ..+++.-+..=|+ +|..+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P~----------- 119 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTPE----------- 119 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG---------------
T ss_pred CCcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccCC-----------
Confidence 4567899999999988764 44443 5899999999999999999975 2344444433333 34211
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEE--EecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV--NLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~--Nl~~~ 693 (772)
..+||+|.+=-- -.+|.+ .+||+.|+..|+|+|++++ |+...
T Consensus 120 ----------------------~~~YDlIW~QW~-----------lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 120 ----------------------EGKYDLIWIQWC-----------LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp ----------------------TT-EEEEEEES------------GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred ----------------------CCcEeEEEehHh-----------hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 368999998221 123333 4689999999999999997 66543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0009 Score=69.23 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEcc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITD 600 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~D 600 (772)
...+||.||+|.|.++..|.... .+++++|+++.+++.|++.+.-. ..+++.++.+|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 45689999999999998888764 46999999999999999987432 22578999998
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=65.73 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=68.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+.|+.+|+|+|.|..-..-..+. +|.+||+||+.+++|++.-+- ...++++.++|..+|
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~------------------ 105 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF------------------ 105 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc------------------
Confidence 356999999999987766655444 999999999999999988742 345799999998887
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHcc
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL 680 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L 680 (772)
..++|.+|.+ .+ -|.. -.+ -+..||+.+.+.-
T Consensus 106 ------------------~~~~dtvimN--PP---FG~~--~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 106 ------------------RGKFDTVIMN--PP---FGSQ--RRH-ADRPFLLKALEIS 137 (198)
T ss_pred ------------------CCccceEEEC--CC---Cccc--ccc-CCHHHHHHHHHhh
Confidence 3668888872 22 1221 222 6789999888765
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=74.37 Aligned_cols=123 Identities=14% Similarity=0.172 Sum_probs=82.2
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVF 131 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~ 131 (772)
+.....+++.. .++.++||+=||.|.++..|++.. .+|+|+|+++.+++.|++++..++. +++|..+|+.+...-
T Consensus 281 l~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 281 LYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHhh---cCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 33444555554 567899999999999999999764 4799999999999999888765543 699999999987511
Q ss_pred --cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhccc
Q 004133 132 --MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF 190 (772)
Q Consensus 132 --~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~ 190 (772)
....+|.|+..- |..+. -..+++.+.+. +|-. ++.++.....+.+.+.
T Consensus 357 ~~~~~~~d~VvvDP-------PR~G~--~~~~lk~l~~~-~p~~-IvYVSCNP~TlaRDl~ 406 (432)
T COG2265 357 WWEGYKPDVVVVDP-------PRAGA--DREVLKQLAKL-KPKR-IVYVSCNPATLARDLA 406 (432)
T ss_pred ccccCCCCEEEECC-------CCCCC--CHHHHHHHHhc-CCCc-EEEEeCCHHHHHHHHH
Confidence 235789887522 11110 12455555554 3433 4445555555555433
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=70.00 Aligned_cols=126 Identities=14% Similarity=0.071 Sum_probs=80.1
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcE---EEEee
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMR---WRVMD 124 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~---f~~~D 124 (772)
|..+...+.++-.......+.+|||+|||+|.-+....+. ...+++++|.|+.|++.++..... .+... +....
T Consensus 15 YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~~~~~~~~~~ 93 (274)
T PF09243_consen 15 YAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNNRNAEWRRVL 93 (274)
T ss_pred HHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-ccccccchhhhhh
Confidence 3344444444332221235679999999999877655543 456799999999999988766532 22211 11111
Q ss_pred ccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 125 MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
..+.. +....|+|++.++|.-+.+ + .+..+++.+-+.+.+ .++++.-+.+.-
T Consensus 94 ~~~~~--~~~~~DLvi~s~~L~EL~~-~----~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 94 YRDFL--PFPPDDLVIASYVLNELPS-A----ARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hcccc--cCCCCcEEEEehhhhcCCc-h----HHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 11111 2223499999999998876 2 267888888777765 888998877643
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0005 Score=72.27 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=53.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...|+.||-|.|+|+..|.+.. .+|++||||+.++.+-++.+. ..++++|+.+|++++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence 5789999999999999999986 369999999999999999997 357899999999987
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=67.48 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCchhHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCC-ccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDET-FDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~-~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~s-fDvVi~~~~l 145 (772)
+.+++|||.|.|--+..|+= ..-.+||-+|....=+...+.....-+ ++++++++-++++. .+.. ||+|.+..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~--~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG--QEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc--cccccCcEEEeehcc
Confidence 58999999999999888773 233459999998877766655443333 46999999999986 3233 9999986543
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. +..+++-+...+|+||.++..-
T Consensus 146 ~-----------L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 146 S-----------LNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred c-----------hHHHHHHHHHhcccCCcchhhh
Confidence 2 5678889999999999986543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0017 Score=76.09 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=62.4
Q ss_pred hhhHHHHHHHhhcCC-C---CCCCCeEEEEcCCCchhHHHHHHcC--------C-CeEEEEeCCHHHHHHHHHHhccCC-
Q 004133 50 WPQLRDPLISLIGAP-T---SSPPPQILVPGCGNSRLSEHLYDAG--------F-HGITNVDFSKVVISDMLRRNVRDR- 115 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~-~---~~~~~~ILDlGCG~G~ls~~La~~g--------~-~~V~gvDiS~~~I~~a~~~~~~~~- 115 (772)
...+...+...+... . .....+|||+|||+|.+...+++.. . .+++|+|+++.++..++.++....
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~ 88 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL 88 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence 345555555554220 0 0134699999999999998877641 1 468999999999998877654332
Q ss_pred CCcEEEEeeccCcc----cccCCCccEEEeccccccc
Q 004133 116 SDMRWRVMDMTSMQ----VFMDETFDVILDKGGLDAL 148 (772)
Q Consensus 116 ~~v~f~~~D~~~l~----~~~~~sfDvVi~~~~l~~l 148 (772)
......+.|..... .-..+.||+|+.+-..--+
T Consensus 89 ~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 89 LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred CCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 23455555543211 0112579999987766543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=61.53 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHH-----cCCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccCcccccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYD-----AGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQVFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~-----~g~~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~l~~~~~~sfD 137 (772)
.+...|+|+|||.|.++..|+. ....+|++||.++..++.+.++..... .++++..+++.+.. .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCe
Confidence 4678999999999999999988 433479999999999999987765433 35677777766543 356778
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+++.-++-.-+. ..+++...+ ++-.++++
T Consensus 102 ~~vgLHaCG~Ls---------~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDLS---------DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccchH---------HHHHHHHHH---cCCCEEEE
Confidence 888766655553 345555555 55555443
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0016 Score=78.39 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=76.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-------CC-----CCcEEEEEcCHH---HHHH-----------HHH----hc----
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-------MP-----FVGIEAVELDLT---MLNL-----------AED----YF---- 586 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-------~p-----~~~i~~VEiDp~---v~~v-----------A~~----~F---- 586 (772)
....+|+.+|.|+|.-...+... -| .+++..||.+|. -+.- ++. |-
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 44588999999999433222221 23 358999998762 1111 111 10
Q ss_pred CCC----CC--CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC
Q 004133 587 GFT----QD--KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 660 (772)
Q Consensus 587 g~~----~~--~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~ 660 (772)
|+. ++ =++++++||+.+.+.+.. .++|+|++|.|++..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~--------------------------------~~~d~~~lD~FsP~~---- 179 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLD--------------------------------ARADAWFLDGFAPAK---- 179 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhcc--------------------------------ccccEEEeCCCCCcc----
Confidence 210 12 267799999999998864 469999999999853
Q ss_pred CcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 661 TCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 661 s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
.+++.+.++|..++++++|+|+|+
T Consensus 180 ---np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 180 ---NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ---ChhhccHHHHHHHHHHhCCCCEEE
Confidence 688999999999999999999999
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0031 Score=61.27 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=81.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.....||.+|-|+|.++..+..+ .+...++++|.+++-+..-.+.|. ..+++.||+...=...+
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~---------- 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLG---------- 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHh----------
Confidence 44568999999999988866554 466799999999999999888873 35699999987533333
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
+..+..||.||.-+ +...+ | -=.+.+.|+.+..+|..||.++.=..+
T Consensus 112 ------------------e~~gq~~D~viS~l----Pll~~--P--~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 ------------------EHKGQFFDSVISGL----PLLNF--P--MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ------------------hcCCCeeeeEEecc----ccccC--c--HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22368899999733 11101 1 113678999999999999999966655
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=60.37 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=64.0
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
.-++++++||+.+.|++.. ..+|+|+.|.+++.. .+++.+.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~--------------------------------~~~Da~ylDgFsP~~-------nPelWs~ 70 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLD--------------------------------ARFDAWYLDGFSPAK-------NPELWSE 70 (124)
T ss_dssp TEEEEEEES-HHHHHHHB---------------------------------T-EEEEEE-SS-TTT-------SGGGSSH
T ss_pred CEEEEEEEcHHHHHHHhCc--------------------------------ccCCEEEecCCCCcC-------CcccCCH
Confidence 3578999999999999975 679999999999853 6789999
Q ss_pred HHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEec
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~ 729 (772)
++|+.+.++++++|+++- .+.... |-..|.++==+|...+-...-.+++.|..
T Consensus 71 e~~~~l~~~~~~~~~l~T--ys~a~~----Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLAT--YSSAGA----VRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHEEEEEEEEE--S--BHH----HHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHhCCCcEEEE--eechHH----HHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 999999999999999883 333333 34445555334665554344556666653
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0041 Score=66.91 Aligned_cols=161 Identities=13% Similarity=0.118 Sum_probs=117.3
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CC
Q 004133 513 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GF 588 (772)
Q Consensus 513 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~ 588 (772)
+++..+=..+|+.+..|.. ....+||.+..|-|+=+..+...++ ...|+++|+++.=+...+.++ |.
T Consensus 65 G~~~vQd~sS~l~~~~L~~---------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~ 135 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP---------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV 135 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT---------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CcEEecccccccccccccc---------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC
Confidence 4444444455665554432 3446799999999987778888876 569999999999988887765 54
Q ss_pred CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---
Q 004133 589 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA--- 665 (772)
Q Consensus 589 ~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~--- 665 (772)
..+.++..|+..+..... ...||.|++|+-.+.. +-+.-.|.
T Consensus 136 ---~~v~~~~~D~~~~~~~~~-------------------------------~~~fd~VlvDaPCSg~-G~i~r~p~~~~ 180 (283)
T PF01189_consen 136 ---FNVIVINADARKLDPKKP-------------------------------ESKFDRVLVDAPCSGL-GTIRRNPDIKW 180 (283)
T ss_dssp ---SSEEEEESHHHHHHHHHH-------------------------------TTTEEEEEEECSCCCG-GGTTTCTTHHH
T ss_pred ---ceEEEEeecccccccccc-------------------------------ccccchhhcCCCccch-hhhhhccchhh
Confidence 568888899999976654 2469999999955521 11222222
Q ss_pred ----------CCCcHHHHHHHHHcc----CCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEee
Q 004133 666 ----------DFVEGSFLLTVKDAL----SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 666 ----------~f~~~~fl~~~~~~L----~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~ 717 (772)
..+..+.|+.+.+.| +|||.+|.-..+-.++..+.+++.+-+.++.....++
T Consensus 181 ~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~ 246 (283)
T PF01189_consen 181 RRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPI 246 (283)
T ss_dssp HE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECC
T ss_pred cccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 134778999999999 9999999998877888888899988888877655543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.004 Score=61.34 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=87.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+.=++.||+|+|....||.... |+....+.||+|...++.++---. +..++.+++.|-..-|+.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl~~~l~~------------- 108 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRVHIDVVRTDLLSGLRN------------- 108 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCCccceeehhHHhhhcc-------------
Confidence 35668999999999999999876 566788999999999986655432 345688999987666554
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-----------------CCcHHHHHHHHHccCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-----------------FVEGSFLLTVKDALSEQ 683 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~-----------------f~~~~fl~~~~~~L~~~ 683 (772)
.+.|++++. .+ + +..++.. =+...+|..+..+|+|.
T Consensus 109 ---------------------~~VDvLvfN--PP-Y---Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~ 161 (209)
T KOG3191|consen 109 ---------------------ESVDVLVFN--PP-Y---VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPR 161 (209)
T ss_pred ---------------------CCccEEEEC--CC-c---CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcC
Confidence 458888862 11 1 0011111 13577888999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHH
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKM 707 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~ 707 (772)
|+|-++...++.. ++++..++.
T Consensus 162 Gv~Ylv~~~~N~p--~ei~k~l~~ 183 (209)
T KOG3191|consen 162 GVFYLVALRANKP--KEILKILEK 183 (209)
T ss_pred ceEEeeehhhcCH--HHHHHHHhh
Confidence 9999998776654 345555543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0051 Score=68.36 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=104.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
....+||.+..+-|+=+..|.+..++ ..|+++|+|+.=++..+... |+ .++.++..|+..+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~~~~~~~------ 225 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARRLAELLP------ 225 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccccccccccc------
Confidence 34578999999988777788888765 35699999998888887765 65 348899999987754432
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCC-cCCcC-------------CCcHHHHHHHHHccC
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAAD-------------FVEGSFLLTVKDALS 681 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s-~Pp~~-------------f~~~~fl~~~~~~L~ 681 (772)
...+||.|++|+-.+. .|+- --|.. =+..++|..+.+.|+
T Consensus 226 ------------------------~~~~fD~iLlDaPCSg--~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk 279 (355)
T COG0144 226 ------------------------GGEKFDRILLDAPCSG--TGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK 279 (355)
T ss_pred ------------------------ccCcCcEEEECCCCCC--CcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1236999999995542 2322 11221 247789999999999
Q ss_pred CCcEEEEEecCCChhHHHHHHHHHHHhccceEEE
Q 004133 682 EQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 715 (772)
Q Consensus 682 ~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~ 715 (772)
|||.||.-..+..++..+.++..+-+-.+.+-..
T Consensus 280 ~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~ 313 (355)
T COG0144 280 PGGVLVYSTCSLTPEENEEVVERFLERHPDFELE 313 (355)
T ss_pred CCCEEEEEccCCchhcCHHHHHHHHHhCCCceee
Confidence 9999999999999998899998887776654433
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00091 Score=71.59 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||.||+|.|.++..|....+ +|++||+|+.+++.+++.+. +++++++.+|+.++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~ 99 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKV 99 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcC
Confidence 446899999999999999999864 89999999999999999774 26899999999875
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=66.35 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=44.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||.||+|.|.+...+.... ...+++||+++.+++.|++. +++++.+|..+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~ 67 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEG 67 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhc
Confidence 34689999999999988887664 45789999999999998752 467888887654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0023 Score=64.31 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=74.2
Q ss_pred eEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccccc
Q 004133 71 QILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l 148 (772)
+++|+|+|.|--+..|+=. +..+++.+|....=+...+.....-+ .++++++..+++ . ....+||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EYRESFDVVTARAVAP-- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TTTT-EEEEEEESSSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-ccCCCccEEEeehhcC--
Confidence 8999999999988777654 44579999999987766654443322 469999999999 3 4678999999876543
Q ss_pred ccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 149 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 149 ~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...+++-+...|++||++++.-
T Consensus 127 ---------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 ---------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ---------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---------HHHHHHHHHHhcCCCCEEEEEc
Confidence 5688999999999999998874
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0021 Score=64.60 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=75.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHHhcCCC----------CCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYFGFT----------QDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~Fg~~----------~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...+.|.||.|+|.|+.....+... ...++||.=|++++.+++..... +..++.+++|||+.--.+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 4578999999999998877765533 34499999999999999876221 347899999999875222
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||.|.+-+..+ +..+.+.+.|+++|-+++-
T Consensus 160 -------------------------------~a~YDaIhvGAaa~----------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 -------------------------------QAPYDAIHVGAAAS----------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred -------------------------------cCCcceEEEccCcc----------------ccHHHHHHhhccCCeEEEe
Confidence 46799999965433 3356667779999888876
Q ss_pred ec
Q 004133 690 LV 691 (772)
Q Consensus 690 l~ 691 (772)
+.
T Consensus 193 ~~ 194 (237)
T KOG1661|consen 193 VG 194 (237)
T ss_pred ec
Confidence 64
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0052 Score=60.70 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe-eccCcc-------cccCCCc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSMQ-------VFMDETF 136 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~-D~~~l~-------~~~~~sf 136 (772)
.|+++|||+||..|.++.-..++ +..-|.|||+-. ......+.++++ |+++.. ..++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----------ccCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 57899999999999999877765 234599999854 122335666666 888743 3677889
Q ss_pred cEEEecccccccc----cCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 137 DVILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 137 DvVi~~~~l~~l~----~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
|+|++...-.+-- +......+...++.-....++|+|.|+|-.|....
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 9999744322111 10001122445556666788999999999987653
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00092 Score=66.83 Aligned_cols=143 Identities=19% Similarity=0.204 Sum_probs=87.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccH-----HHHHHhhcccCcc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG-----IKFVREMKSSSAT 614 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg-----~~~l~~~~~~~~~ 614 (772)
+...+||.||.+-|+.+.++.+.. +..+|.+||+-+. .+.+.+..+.+|. .+.+.+..
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~----- 85 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLL----- 85 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSH-----
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhc-----
Confidence 466899999999999999999987 5669999999988 1113344444443 22332221
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC---cCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp---~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....++|+|+.|+-..- .|..... ..-+....+..+...|++||.||+-+.
T Consensus 86 -----------------------~~~~~~~dlv~~D~~~~~--~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 -----------------------PESGEKFDLVLSDMAPNV--SGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp -----------------------GTTTCSESEEEE---------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred -----------------------cccccCcceeccccccCC--CCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 011368999999983221 1110000 001223344566677999999999887
Q ss_pred CCChhHHHHHHHHHHHhccceEEEeecC---CceEEEE
Q 004133 692 SRSQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLF 726 (772)
Q Consensus 692 ~~~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~vl~ 726 (772)
..... . .++..++..|..+..++... ..|+.++
T Consensus 141 ~~~~~-~-~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 141 KGPEI-E-ELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp SSTTS-H-HHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred cCccH-H-HHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 64444 3 78999999999999988643 3455444
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0041 Score=62.26 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=94.4
Q ss_pred cccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEE
Q 004133 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (772)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~ 122 (772)
-+|......+...+..=++....+++.+||=+|..+|+...++.+. |-..+++|++|+.+.......+ ..++|+--+.
T Consensus 52 R~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL 130 (231)
T COG1889 52 REWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPIL 130 (231)
T ss_pred eeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeee
Confidence 3487777788887777666545578999999999999999999887 5456999999999988886665 4577898899
Q ss_pred eeccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 123 MDMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 123 ~D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
.|+..... +--+..|+|+..- . .+...+-+..++...||+||..++.
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~DV----A-----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQDV----A-----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cccCCcHHhhhhcccccEEEEec----C-----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 99987541 2235678877421 1 2223677888999999999977664
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.003 Score=62.05 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=57.4
Q ss_pred EEEEcCHHHHHHHHHhcCCC---CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeE
Q 004133 570 EAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDI 646 (772)
Q Consensus 570 ~~VEiDp~v~~vA~~~Fg~~---~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~ 646 (772)
++||+++.|+++|++..... ..++++++++|+.+. . ..+..||+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p-----------------------------~~~~~fD~ 47 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----P-----------------------------FDDCEFDA 47 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----C-----------------------------CCCCCeeE
Confidence 47999999999998765321 135799999998764 1 11367999
Q ss_pred EEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 647 LIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 647 IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
|++-.-- ..+. --..+|+.+++.|+|||.|++--++..
T Consensus 48 v~~~~~l----~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 48 VTMGYGL----RNVV------DRLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred EEecchh----hcCC------CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 9973210 1111 127899999999999999987655543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0024 Score=66.17 Aligned_cols=135 Identities=8% Similarity=0.066 Sum_probs=87.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------------~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...+|||.|+|-|--..||+.+. .+|++||++|.-++.+.+..++. ...+++++++|..++=...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~- 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA- 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence 34799999999999999999873 58999999999999987644332 2457899999887751100
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
....+||+|.- . . .-..+ |+ =.-..+.+.+.++|+|||.+++-
T Consensus 120 -----------------------------~~~~~fD~VyD-r--a-~~~Al---pp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 -----------------------------NNLPVFDIWYD-R--G-AYIAL---PN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred -----------------------------cccCCcCeeee-e--h-hHhcC---CH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 01246898753 1 1 11112 22 24578999999999999977654
Q ss_pred ecCCCh----hHHHHHHHHHHHhccceEEEe
Q 004133 690 LVSRSQ----ATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 690 l~~~~~----~~~~~v~~~l~~vF~~v~~~~ 716 (772)
....+. ..+.--...+++.|...+.+.
T Consensus 163 ~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 163 VMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred EEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 433221 111111356677776554443
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00014 Score=72.36 Aligned_cols=95 Identities=19% Similarity=0.354 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
.+.++||+|+|+|..+..++.. +.+|++.+.|..|+.+.+++. |-+....+.. -.+-+||+|.+-..||-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~--------ynVl~~~ew~-~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN--------YNVLTEIEWL-QTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC--------Cceeeehhhh-hcCceeehHHHHHHHHh
Confidence 3579999999999999988775 567999999998888775443 2222222222 23446999999999987
Q ss_pred cccCccchHHHHHHHHHHHhcccc-CeEEEEEE
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKS-GGKFVCLT 179 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkp-GG~~ii~~ 179 (772)
..++ -++|+.|+.+|+| +|+.|+.-
T Consensus 182 c~~p-------~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 182 CFDP-------FKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hcCh-------HHHHHHHHHHhccCCCcEEEEE
Confidence 7664 4899999999999 88887654
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0029 Score=65.47 Aligned_cols=134 Identities=14% Similarity=0.145 Sum_probs=84.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC------------CCCCCeEEEEccHHHHHHhh
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------TQDKSLKVHITDGIKFVREM 608 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~------------~~~~rl~v~i~Dg~~~l~~~ 608 (772)
..+.+|||.|+|-|.-..+|+... .+|++||++|..++.|.+.-+. ..+.++++.++|-.++=...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 445689999999999999999873 5999999999999998554332 13467899999987751111
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE-
Q 004133 609 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI- 687 (772)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv- 687 (772)
..+||+|.= .. .-..+ |+ =.-..+.+.++++|+|+|.+.
T Consensus 114 --------------------------------~g~fD~iyD---r~-~l~Al---pp-~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 --------------------------------VGKFDLIYD---RT-FLCAL---PP-EMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp --------------------------------HHSEEEEEE---CS-STTTS----G-GGHHHHHHHHHHCEEEEEEEEE
T ss_pred --------------------------------cCCceEEEE---ec-ccccC---CH-HHHHHHHHHHHHHhCCCCcEEE
Confidence 247999972 11 11222 23 356889999999999999833
Q ss_pred EEec-C---CChhHHHHHHHHHHHhccceEEEe
Q 004133 688 VNLV-S---RSQATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 688 ~Nl~-~---~~~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
+-+. . .....+.--.+.+.+.|..-+.+.
T Consensus 154 i~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~ 186 (218)
T PF05724_consen 154 ITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIE 186 (218)
T ss_dssp EEEES-CSCSSSSS----HHHHHHHHTTTEEEE
T ss_pred EEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEE
Confidence 2222 1 111122222456666676544443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.004 Score=67.15 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=55.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...++..++|+|.-+..+.+.+| ..+|.++|.||.+++.|++.+. +.+|++++.+|..++.....
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~--~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK--PFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc--cCCcEEEEeCCHHHHHHHHH
Confidence 35799999999999999998886 6799999999999999998763 24689999999999876654
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0056 Score=61.22 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...++|.+=.|+|+|..-..... -.+++.||.|.....+.+++.. +....+.+++..|+..+++....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~---------- 111 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT---------- 111 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----------
Confidence 45789999999999987655543 3499999999999999999973 32368899999999999888651
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc-HHHHHH--HHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLT--VKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~-~~fl~~--~~~~L~~~Gilv~Nl~ 691 (772)
...||+|++|- +- ...++. ..-+.. -...|+|+|++++-.-
T Consensus 112 --------------------~~~FDlVflDP--Py--------~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 112 --------------------REPFDLVFLDP--PY--------AKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred --------------------CCcccEEEeCC--CC--------ccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 13599999953 11 122442 222222 2356999999998653
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.013 Score=56.00 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=77.2
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCC-CccEEEecccccccccCccc----hHHHHHHHHHH
Q 004133 93 GITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDE-TFDVILDKGGLDALMEPELG----HKLGNQYLSEV 165 (772)
Q Consensus 93 ~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~-sfDvVi~~~~l~~l~~~~~~----~~~~~~~l~ei 165 (772)
+|++.||-+.+|+..++++..... +++++..+=.++..+-+. ++|+|+- -|.|++..+.. +..-..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF--NLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE--EESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 489999999999999999876543 688888877776633344 8998764 35566553311 22366889999
Q ss_pred HhccccCeEEEEEEcC-chhh------hhccccccc-CCcEEEEEEcCCCCCCCCCcceEEEEEEe
Q 004133 166 KRLLKSGGKFVCLTLA-ESHV------LGLLFPKFR-FGWKMSVHAIPQKSSSEPSLQTFMVVADK 223 (772)
Q Consensus 166 ~rvLkpGG~~ii~~~~-~~~~------~~~l~~~~~-~~w~~~~~~~~~~~~~~~~l~~f~~~~~K 223 (772)
.++|+|||++.++.|. .+.- ...++.... ..|.+..+...+. ..-|++++.++|
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~----~~~pp~l~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQ----KNNPPLLVIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-----SS---EEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCC----CCCCCEEEEEEC
Confidence 9999999999998876 3321 123344443 3788877776553 335777777765
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0023 Score=65.05 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc---cCCCccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF---MDETFDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~---~~~sfDvVi~~~~l 145 (772)
..++|||||=+...... ..++-+|+.||+.+ . .-.+.+.|+.+.| . +++.||+|....+|
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns------------~--~~~I~qqDFm~rp-lp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNS------------Q--HPGILQQDFMERP-LPKNESEKFDVISLSLVL 114 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCC------------C--CCCceeeccccCC-CCCCcccceeEEEEEEEE
Confidence 47999999976554432 23444699999976 0 1235677777766 4 47899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeE-----EEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGK-----FVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~-----~ii~~ 179 (772)
.+++++.. +-.|+..+++.|+|+|. ++++.
T Consensus 115 NfVP~p~~----RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 115 NFVPDPKQ----RGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred eeCCCHHH----HHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 99987553 88999999999999999 76664
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0053 Score=61.89 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC-cccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~-l~~~~~~sfDvVi~~~~l 145 (772)
..+.+||++|-|-|.....+.......=+.|+..+.++++|+...-....++....+-..+ ++.++++.||-|+-...-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 3689999999999999988877765556889999999999987765555677777775554 223678999988743222
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
.+..+ ...+.+.+.|+|||+|+|-..
T Consensus 180 e~yEd-------l~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYED-------LRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHH-------HHHHHHHHhhhcCCCceEEEe
Confidence 22222 678889999999999998544
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0019 Score=68.61 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||.||.|.|.++..|.+.. .+|++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 44789999999999999999883 4899999999999999998853 46899999998764
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0072 Score=63.11 Aligned_cols=118 Identities=15% Similarity=0.223 Sum_probs=86.5
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~ 129 (772)
..++..+++. .|+.+|||-|.|+|.++..+++. +-.+++-.|+-+.-.++|++.+..+ ..++++.+-|++...
T Consensus 94 ia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 4566777776 79999999999999999999886 2357999999998888888877554 357999999999876
Q ss_pred ccc--CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCe-EEEEEEcCchhhhh
Q 004133 130 VFM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAESHVLG 187 (772)
Q Consensus 130 ~~~--~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG-~~ii~~~~~~~~~~ 187 (772)
|. +..+|.|+. |...+ -.++-.+..+||.+| ++++.+-+-+.+.+
T Consensus 171 -F~~ks~~aDaVFL----DlPaP--------w~AiPha~~~lk~~g~r~csFSPCIEQvqr 218 (314)
T KOG2915|consen 171 -FLIKSLKADAVFL----DLPAP--------WEAIPHAAKILKDEGGRLCSFSPCIEQVQR 218 (314)
T ss_pred -ccccccccceEEE----cCCCh--------hhhhhhhHHHhhhcCceEEeccHHHHHHHH
Confidence 55 467888763 32222 245666777888766 66666655444433
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0016 Score=64.02 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=50.9
Q ss_pred eEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc-cccCCC-ccEEEec
Q 004133 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-VFMDET-FDVILDK 142 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~-~~~~~s-fDvVi~~ 142 (772)
.|+|+.||-|..+..+++. +..|++||+++..++.++.++.-- ..+++|+++|+.++. .+.... ||+|+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998 557999999999999997776433 237999999999864 122222 8999854
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0057 Score=61.98 Aligned_cols=132 Identities=21% Similarity=0.227 Sum_probs=89.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEcc---HHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD---GIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~D---g~~~l~~~~~~~~~~~~ 617 (772)
+.+.=||.||+|+|.....|...- ....+|||+|.|+++|.+ +.-+. .++.+| |+.|
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~--~e~eg---dlil~DMG~Glpf------------- 108 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE--RELEG---DLILCDMGEGLPF------------- 108 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH--hhhhc---CeeeeecCCCCCC-------------
Confidence 456679999999998888887663 589999999999999986 22122 334444 3322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-e----CCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILII-D----VDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D----~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
....||.+|. - +.+.|.+. ..+.-.-..|+..+...|+.++-.|+.+..
T Consensus 109 ----------------------rpGtFDg~ISISAvQWLcnA~~s~----~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 109 ----------------------RPGTFDGVISISAVQWLCNADKSL----HVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ----------------------CCCccceEEEeeeeeeecccCccc----cChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 2356787652 1 12223222 123333367999999999999999999999
Q ss_pred CChhHHHHHH-HHHHHhccceEEEeec
Q 004133 693 RSQATKDMVI-SRMKMVFNHLFCLQLE 718 (772)
Q Consensus 693 ~~~~~~~~v~-~~l~~vF~~v~~~~~~ 718 (772)
.+.+..+++. +.+++=|.--..++-+
T Consensus 163 en~~q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 163 ENEAQIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred cchHHHHHHHHHHHhhccCCceeeecc
Confidence 9888888877 4556668764444433
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0016 Score=66.27 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.....|+++-.|-|..+..++.+.+...|.++|++|..++..++...+. -..++.++.+|+.+++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~------------ 167 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE------------ 167 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T------------
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc------------
Confidence 3457899999999988777887666678999999999999999887332 246899999999999772
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
..+|-||++.-.. ..+||..+..+++++|++-
T Consensus 168 ----------------------~~~drvim~lp~~--------------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 ----------------------GKFDRVIMNLPES--------------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------------------T-EEEEEE--TSS--------------GGGGHHHHHHHEEEEEEEE
T ss_pred ----------------------cccCEEEECChHH--------------HHHHHHHHHHHhcCCcEEE
Confidence 4699999954221 2579999999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0082 Score=61.46 Aligned_cols=114 Identities=17% Similarity=0.033 Sum_probs=80.9
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~ 127 (772)
+...++..++.. ..+.+.||+|.=||.-+..++.. .-..|+++|+.+...+.+.+..... ...++++++++.+
T Consensus 60 d~g~fl~~li~~---~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 60 DKGQFLQMLIRL---LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred HHHHHHHHHHHH---hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 333444444443 34679999998888777666665 2246999999999999886655433 3479999998876
Q ss_pred c-c----cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 128 M-Q----VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 128 l-~----~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
. + ....++||+++. |+-.+ .+..++++..++||+||++++-
T Consensus 137 sLd~l~~~~~~~tfDfaFv----DadK~------nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFV----DADKD------NYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hHHHHHhcCCCCceeEEEE----ccchH------HHHHHHHHHHhhcccccEEEEe
Confidence 2 1 235688999874 33322 2568999999999999999874
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0057 Score=60.94 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=72.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC---CCCCeEEEEccHHHHH-HhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFV-REMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~---~~~rl~v~i~Dg~~~l-~~~~~~~~~~~ 616 (772)
...++||.||.|.|...+.+....+..+|++-|+++ +++..+...... ...++++..-|=-+-+ ....
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~------- 115 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL------- 115 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH-------
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc-------
Confidence 567899999999999998888886667999999999 888888776432 2456666654411111 1111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
....||+||. |+-- ..-.-+.++..++.+|+++|.+++-...|..
T Consensus 116 -----------------------~~~~~D~IlasDv~Y-----------~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~ 161 (173)
T PF10294_consen 116 -----------------------EPHSFDVILASDVLY-----------DEELFEPLVRTLKRLLKPNGKVLLAYKRRRK 161 (173)
T ss_dssp -----------------------S-SSBSEEEEES--S------------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-T
T ss_pred -----------------------ccccCCEEEEecccc-----------hHHHHHHHHHHHHHHhCCCCEEEEEeCEecH
Confidence 1357999986 3311 1123488999999999999887776666644
Q ss_pred hHHHHHHHHHHH
Q 004133 696 ATKDMVISRMKM 707 (772)
Q Consensus 696 ~~~~~v~~~l~~ 707 (772)
.. ..+++++++
T Consensus 162 ~~-~~F~~~~~k 172 (173)
T PF10294_consen 162 SE-QEFFDRLKK 172 (173)
T ss_dssp GG-CHHHHHH--
T ss_pred HH-HHHHHHhhh
Confidence 33 345666654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0027 Score=67.13 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=52.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||.||.|.|.++..|.+..+ .+++||+|+.+++.+++.++. .++++++.+|+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 457899999999999999999875 599999999999999998864 57899999998764
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0072 Score=63.79 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=70.3
Q ss_pred CCeEEEEcCCCc--hhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeeccCccccc-----CCCcc
Q 004133 69 PPQILVPGCGNS--RLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQVFM-----DETFD 137 (772)
Q Consensus 69 ~~~ILDlGCG~G--~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~--v~f~~~D~~~l~~~~-----~~sfD 137 (772)
-...||||||-= ....+.++. .-.+|+.+|+.+.++..++..+.. .++ ..++.+|+.+..... .+-+|
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-NPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-CCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 368999999953 344556554 445799999999999999887743 345 889999999854111 12233
Q ss_pred -----EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 138 -----VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 138 -----vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.++..++|+++.+.++ -..++..+...|.||.++++.....+
T Consensus 148 ~~rPVavll~~vLh~v~D~~d----p~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDD----PAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCT----HHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccC----HHHHHHHHHHhCCCCceEEEEecCCC
Confidence 5778899999977544 57899999999999999999887654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0059 Score=60.90 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
-.+.+|||+|.|+|..+..-+..|...|+..|+.+..+...+-+.+.++.++.|...|+.- .+..||+++...++.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeeceec
Confidence 3578999999999999999999998889999999888776655555566678888888765 357899999887765
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
.-.. ..+++....++...|-.+++-+-+.++..+
T Consensus 154 ~~~~-------a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk 187 (218)
T COG3897 154 NHTE-------ADRLIPWKDRLAEAGAAVLVGDPGRAYLPK 187 (218)
T ss_pred CchH-------HHHHHHHHHHHHhCCCEEEEeCCCCCCCch
Confidence 4322 567777444444445555555555555443
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.019 Score=63.81 Aligned_cols=116 Identities=23% Similarity=0.192 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCccc-ccC-CCccEEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQV-FMD-ETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~---~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~-~~~-~sfDvVi 140 (772)
.|+.+|||+.++.|.=+.+++.... ..|+++|.++.=++.++.+...-+. ++...+.|...++. ... +.||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 7899999999999999988888632 2369999999999988887755443 46788888776541 222 3599998
Q ss_pred e------ccccccccc------Cccc---hHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 141 D------KGGLDALME------PELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 141 ~------~~~l~~l~~------~~~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
. .|++.--++ +++- ...-.++|..+.++|||||+++..|.+-
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 4 333311111 0000 0125689999999999999999988764
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0028 Score=64.45 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHHh
Q 004133 541 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 541 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 585 (772)
+.+.+|...|+++| +|+|.|.+..+ ..+|.+.|||+.+++.|++=
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 47789999999999 89999998432 35999999999999999753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0033 Score=62.03 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=53.5
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
-.+..+|.|+|.|+++..+.- -+|.+||.||...+.|++...++.+.++.|+.+||+.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 457899999999999888873 48999999999999999998888889999999999998
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.014 Score=62.81 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc-cccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ-VFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~-~~~~~sfDvVi~~ 142 (772)
.++..|||+++|.|.=+..+++. +-..|++.|+++.-+..++.+....+. ++...+.|..... ......||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 68899999999999999888886 235799999999999988877755443 5677778888762 1234469999842
Q ss_pred c------ccccccc------Cccch---HHHHHHHHHHHhcc----ccCeEEEEEEcCc
Q 004133 143 G------GLDALME------PELGH---KLGNQYLSEVKRLL----KSGGKFVCLTLAE 182 (772)
Q Consensus 143 ~------~l~~l~~------~~~~~---~~~~~~l~ei~rvL----kpGG~~ii~~~~~ 182 (772)
. ++..-.+ +++-. ..-.++|+.+.+.+ ||||+++..|.+-
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 2 2221110 11000 12568999999999 9999999998764
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.089 Score=52.97 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=71.6
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHH---HHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM---LNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v---~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
+++.||.|+|.=...|.=.+|+.+++.||-...= ++.+....|+ ++++++.+.+-+ ...
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~--~~~------------- 112 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE--PEY------------- 112 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH--TTT-------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc--ccc-------------
Confidence 7999999999555556667899999999999864 4455566788 469999998877 111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+||+|+.=+.++ . ..+++.+...|+++|.+++---
T Consensus 113 -------------------~~~fd~v~aRAv~~--------l------~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 113 -------------------RESFDVVTARAVAP--------L------DKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -------------------TT-EEEEEEESSSS--------H------HHHHHHHGGGEEEEEEEEEEES
T ss_pred -------------------CCCccEEEeehhcC--------H------HHHHHHHHHhcCCCCEEEEEcC
Confidence 37899999866554 1 6789999999999999987543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0095 Score=63.32 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHh--ccC-C--------------------------C--
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN--VRD-R--------------------------S-- 116 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~--~~~-~--------------------------~-- 116 (772)
.+.+||..|||.|+++..|+..|+. +-|=++|--|+---.=.+ ... + |
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 4679999999999999999999984 777788877763211000 000 0 0
Q ss_pred ----------CcEEEEeeccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 117 ----------DMRWRVMDMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 117 ----------~v~f~~~D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
.++...+|+.+.-. -..++||+|+....+|.-.+ +-.+++.|..+|||||+.+=+
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~N-------ileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHN-------ILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHH-------HHHHHHHHHHhccCCcEEEec
Confidence 11112234333210 11246999998766665433 789999999999999998643
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0075 Score=63.00 Aligned_cols=61 Identities=28% Similarity=0.276 Sum_probs=51.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIK 603 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~ 603 (772)
..+--||.||-|+|.|+.-|.+.. .+|.+||+||.|+.--.+.+ |.+....++|++||.+.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 455679999999999999998885 58999999999887666655 77667899999999655
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.06 Score=56.46 Aligned_cols=128 Identities=15% Similarity=0.180 Sum_probs=88.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
.....|+.-|.|.|++..++.+.. |-.++...|.+..-.+-|++.| |+ ++.+++.+.|--.- .
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~~----G------- 170 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCGS----G------- 170 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeecccC----C-------
Confidence 345689999999999999888776 6669999999999999999999 54 56788887763210 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
| ......+|+|++|+-++. +.+-.+..+|+.+|.-++|+ ++.-+
T Consensus 171 ---F-----------------~~ks~~aDaVFLDlPaPw---------------~AiPha~~~lk~~g~r~csF-SPCIE 214 (314)
T KOG2915|consen 171 ---F-----------------LIKSLKADAVFLDLPAPW---------------EAIPHAAKILKDEGGRLCSF-SPCIE 214 (314)
T ss_pred ---c-----------------cccccccceEEEcCCChh---------------hhhhhhHHHhhhcCceEEec-cHHHH
Confidence 0 111357999999986652 33334455888888777776 34444
Q ss_pred HHHHHHHHHHH-hccceEEEee
Q 004133 697 TKDMVISRMKM-VFNHLFCLQL 717 (772)
Q Consensus 697 ~~~~v~~~l~~-vF~~v~~~~~ 717 (772)
..+...+.|.+ =|-++..+.+
T Consensus 215 Qvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 215 QVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred HHHHHHHHHHhCCCceEEEEEe
Confidence 44444555555 4666665554
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.016 Score=60.64 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=68.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...++|.||.|.|..+.-++.++. +|.+-|+++.|...-++. |+ +|+ |..+|- +.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k-g~------~vl--~~~~w~-~~------------- 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK-GF------TVL--DIDDWQ-QT------------- 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC-CC------eEE--ehhhhh-cc-------------
Confidence 567899999999999999988874 599999999997665442 44 455 333341 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
+.+||+|.+ ++--|-. ..| ...|+.+++.|+|+|++++-++
T Consensus 149 -------------------~~~fDvIsc-LNvLDRc---~~P------~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 149 -------------------DFKFDVISC-LNVLDRC---DRP------LTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred -------------------CCceEEEee-hhhhhcc---CCH------HHHHHHHHHHhCCCCEEEEEEE
Confidence 367999964 1111110 013 7889999999999999997664
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.01 Score=64.12 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHh------c--cCCCCcEEEEeeccCcccccCCCccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRN------V--RDRSDMRWRVMDMTSMQVFMDETFDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~------~--~~~~~v~f~~~D~~~l~~~~~~sfDv 138 (772)
...++|-+|.|.|.-..++.+.+ +.+|+-+|.+|.||+.++... . -..++++.+..|+.++-.-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 35699999999999999999984 788999999999999886321 1 12367899999998854234568998
Q ss_pred EEecccccccccCccchHH----HHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~----~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
||.. +.+|.+ +.. -..+..-+.|.|+++|.+++-.
T Consensus 369 vIVD-----l~DP~t-ps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVD-----LPDPST-PSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEe-----CCCCCC-cchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 8742 223221 111 3466777889999999998764
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.056 Score=55.18 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=102.7
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~ 133 (772)
+..++.. +.++.|+||-.+.+..+|.+.+ ...++++|+++..++.|.+....... .++..++|-...- -.+
T Consensus 10 va~~V~~-----~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~ 83 (226)
T COG2384 10 VANLVKQ-----GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELE 83 (226)
T ss_pred HHHHHHc-----CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-Ccc
Confidence 5556643 5569999999999999999985 46699999999999999887755443 5666667764322 234
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCCCCCCCCC
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPS 213 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~ 213 (772)
..+|+|+..|+-..+ +..++++-.+-|+.=-+|++..-.++..+++++.. .+|.+....+... ..
T Consensus 84 d~~d~ivIAGMGG~l---------I~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~--~~~~I~~E~ileE----~~ 148 (226)
T COG2384 84 DEIDVIVIAGMGGTL---------IREILEEGKEKLKGVERLILQPNIHTYELREWLSA--NSYEIKAETILEE----DG 148 (226)
T ss_pred CCcCEEEEeCCcHHH---------HHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHh--CCceeeeeeeecc----cC
Confidence 589999988866555 66888888888875456666655544444433332 2799999888753 23
Q ss_pred cceEEEEEEecC
Q 004133 214 LQTFMVVADKEN 225 (772)
Q Consensus 214 l~~f~~~~~K~~ 225 (772)
.-|=+.++.+..
T Consensus 149 kiYEIlv~e~~~ 160 (226)
T COG2384 149 KIYEILVVEKSS 160 (226)
T ss_pred eEEEEEEEecCC
Confidence 444556666654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=63.93 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.++||+||++|.++..|.++|. .|++||..+ +.... ...++++....|..... .+.+.+|.+++..+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-----l~~~L-~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmve- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-----MAQSL-MDTGQVEHLRADGFKFR-PPRKNVDWLVCDMVE- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-----cCHhh-hCCCCEEEEeccCcccC-CCCCCCCEEEEeccc-
Confidence 4789999999999999999999998 799999665 22222 34568999998887765 236789998874432
Q ss_pred ccccCccchHHHHHHHHHHHhccccC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSG 172 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpG 172 (772)
.| .++.+-|.+.|..|
T Consensus 281 ---~P-------~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 ---KP-------ARVAELMAQWLVNG 296 (357)
T ss_pred ---CH-------HHHHHHHHHHHhcC
Confidence 21 35556666666544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0083 Score=58.96 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=47.2
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
.|+.+.+|+|.-+..++..+ .+|.+||+||.-++.|+... |. .++++++.+|..+++++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~ 65 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLK 65 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhcc
Confidence 47888889888888777775 47999999999999999876 54 6789999999999877754
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.014 Score=62.40 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=69.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHH---HHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN---LAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~---vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
+.++||.||+|.|.-.--+.+..+. .|.++|-++--.- +++++.|. +. .......|++.+.. .
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~--~~-~~~~lplgvE~Lp~-~--------- 180 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQ--DP-PVFELPLGVEDLPN-L--------- 180 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCC--Cc-cEEEcCcchhhccc-c---------
Confidence 4579999999999887666665443 7888887765433 44555563 22 23344577777655 2
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..||+||+ --.---+..| .+.|..+++.|++||.+|+-..
T Consensus 181 -----------------------~~FDtVF~----MGVLYHrr~P------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 181 -----------------------GAFDTVFS----MGVLYHRRSP------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred -----------------------CCcCEEEE----eeehhccCCH------HHHHHHHHHhhCCCCEEEEEEe
Confidence 56999986 1111113334 7899999999999999997654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0055 Score=65.22 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=53.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
....|+.||-|.|.++..|.+.. .++++||+|+...+.-++.|. .+++++++.+|+.+|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 45789999999999999999987 689999999999999999887 578999999999986
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0049 Score=66.26 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCCeEEEEccccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHHh
Q 004133 542 KSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 542 ~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiDp~v~~vA~~~ 585 (772)
.+.||...|+++| +++|.|.+.++ ..+|.+.|||+.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 4589999999999 89999998754 35899999999999999764
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0088 Score=59.08 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~-~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
.+.+.|+|+|+|.++...+.. ..+|++|+..+...+.|.++.. ....+++.+++|+.+.. | +.-|+|+|-. |+.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEm-lDT 107 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEM-LDT 107 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHH-hhH
Confidence 479999999999999877766 4579999999998888866642 33458999999999988 6 5679988643 443
Q ss_pred -cccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 148 -LMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 148 -l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+...+ ....++.+...||.++.++
T Consensus 108 aLi~E~-----qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 108 ALIEEK-----QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred Hhhccc-----ccHHHHHHHHHhhcCCccc
Confidence 33322 3466777777888888765
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.015 Score=61.86 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=39.9
Q ss_pred CCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHHh
Q 004133 542 KSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 542 ~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 585 (772)
.+.+|...|+++| +++|.|.+.+| ..+|++.|||..+++.|+.=
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 5889999999999 99999999996 36999999999999999753
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.026 Score=61.06 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=66.7
Q ss_pred chhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC
Q 004133 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (772)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~ 127 (772)
..+.+...+..++.. .++..++|.-||.|..+..+++. +...|+|+|.++.+++.++++......++++++++..+
T Consensus 4 H~pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 4 HQSVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CcchhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 344555566666654 57889999999999999999886 33679999999999999988775444578888888877
Q ss_pred cc----cccCCCccEEEe
Q 004133 128 MQ----VFMDETFDVILD 141 (772)
Q Consensus 128 l~----~~~~~sfDvVi~ 141 (772)
+. .....++|.|+.
T Consensus 81 l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILV 98 (305)
T ss_pred HHHHHHhcCCCcccEEEE
Confidence 54 112345776654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.1 Score=52.48 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=97.1
Q ss_pred CCcceeecCCccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHH----H
Q 004133 504 SGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM----L 579 (772)
Q Consensus 504 ~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v----~ 579 (772)
..+.|.+..+.|+. +++-||-.++ -....+||=||..+|+.++.+....+...|.+||..|.+ +
T Consensus 50 eYR~Wnp~RSKLaA----aIl~Gl~~~p--------i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 50 EYREWNPRRSKLAA----AILKGLKNFP--------IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred ceeeeCcchhHHHH----HHHcCcccCC--------cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence 34556666666643 3444443222 255679999999999999999999987799999999976 4
Q ss_pred HHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCC
Q 004133 580 NLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSG 659 (772)
Q Consensus 580 ~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g 659 (772)
.+|++. +++--+.+||..=-+-.. --...|+|+.|+-.++.
T Consensus 118 ~~a~~R------~Ni~PIL~DA~~P~~Y~~------------------------------~Ve~VDviy~DVAQp~Q--- 158 (231)
T COG1889 118 DVAEKR------PNIIPILEDARKPEKYRH------------------------------LVEKVDVIYQDVAQPNQ--- 158 (231)
T ss_pred HHHHhC------CCceeeecccCCcHHhhh------------------------------hcccccEEEEecCCchH---
Confidence 555553 556778888864321111 02569999999976653
Q ss_pred CCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC-------hhHHHHHHHHHHHhc
Q 004133 660 MTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS-------QATKDMVISRMKMVF 709 (772)
Q Consensus 660 ~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~-------~~~~~~v~~~l~~vF 709 (772)
..-+..++...|+++|-+++-+-.|+ .+.++.-+.+|.+-+
T Consensus 159 ---------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 159 ---------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ---------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence 26688899999999995554443332 334454566666554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.018 Score=54.84 Aligned_cols=59 Identities=5% Similarity=-0.075 Sum_probs=47.2
Q ss_pred eEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc
Q 004133 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~ 129 (772)
.+||+|||.|..+..++..+. .+++++|.++.+++.++++..... .++++....+.+-+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCC
Confidence 489999999999999988764 379999999999999987764432 45888887776543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0051 Score=55.67 Aligned_cols=97 Identities=18% Similarity=0.077 Sum_probs=43.2
Q ss_pred EEEcCCCchhHHHHHHc----CCCeEEEEeCCHH---HHHHHHHHhccCCCCcEEEEeeccCc-ccccCCCccEEEeccc
Q 004133 73 LVPGCGNSRLSEHLYDA----GFHGITNVDFSKV---VISDMLRRNVRDRSDMRWRVMDMTSM-QVFMDETFDVILDKGG 144 (772)
Q Consensus 73 LDlGCG~G~ls~~La~~----g~~~V~gvDiS~~---~I~~a~~~~~~~~~~v~f~~~D~~~l-~~~~~~sfDvVi~~~~ 144 (772)
||+|+..|..+..+++. +..+++++|..+. .-+.+++ .....+++++.+|..+. +.++.++||+++.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68998888888777664 2236999999994 3333322 11234699999998764 2244679999886442
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
-.+ ......++.+.+.|+|||++++-+
T Consensus 79 H~~--------~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY--------EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--------HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCH--------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 111 126788999999999999998764
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.012 Score=66.67 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=55.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCc
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM 128 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l 128 (772)
..+.+++.. ..+..+||+-||||.++..+++ +...|+||++++.+++.|+.++..++. +.+|+++-++++
T Consensus 373 s~i~e~~~l---~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 373 STIGEWAGL---PADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHhCC---CCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 334444443 5567899999999999999876 466899999999999999877755544 899999966664
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.031 Score=60.76 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=47.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~ 604 (772)
+.+.||.+|+|+|.|.+|.++.. -.+|.+||-+... +.|++-+.-. .++.++++.|..-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 45789999999999999999997 4599999998766 8888776221 245788887765443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.021 Score=57.96 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc---cccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---VFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~---~~~~~sfDvVi~ 141 (772)
....|+|.-||-|..+..++..+. .|++||+++.-|.-|+.++.-- ..+++|+++|+.++- .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 356899999999999999998876 5999999999998776655321 137999999998853 133344556654
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.029 Score=58.51 Aligned_cols=82 Identities=21% Similarity=0.124 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|+|+|||-=-++...... .-..|+|+||+..+++...+-....+...++...|+..-+ +....|+.+..-++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~--~~~~~DlaLllK~l 181 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP--PKEPADLALLLKTL 181 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH--TTSEESEEEEET-H
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC--CCCCcchhhHHHHH
Confidence 35789999999998888766554 2247999999999999887766666778899999998865 67889999988888
Q ss_pred ccccc
Q 004133 146 DALME 150 (772)
Q Consensus 146 ~~l~~ 150 (772)
..+..
T Consensus 182 p~le~ 186 (251)
T PF07091_consen 182 PCLER 186 (251)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.033 Score=52.92 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=44.0
Q ss_pred CCCCeEEEEcccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHH
Q 004133 541 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 603 (772)
Q Consensus 541 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~ 603 (772)
.+..++|+||+|.|. ++..|.+. +..|++||++|..++.|++. .++++++|-.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~ 69 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFN 69 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCC
Confidence 445789999999995 88888865 35999999999999988776 25788888654
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.041 Score=57.58 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-------CC--CCCeEEEEccHHHHHHhhc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------TQ--DKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-------~~--~~rl~v~i~Dg~~~l~~~~ 609 (772)
+..++||.+=.|.|.....+... +.+|+.||-+|.+..+.++.+.- .. ..|++++.+|+.+||+...
T Consensus 87 g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 87 DYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 44568999999999998877766 35699999999999998876632 11 1689999999999998754
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.062 Score=59.12 Aligned_cols=147 Identities=14% Similarity=0.224 Sum_probs=91.2
Q ss_pred CCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCC-----CCCCeEEEEccHHHHHHhhcc
Q 004133 542 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFT-----QDKSLKVHITDGIKFVREMKS 610 (772)
Q Consensus 542 ~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~-----~~~rl~v~i~Dg~~~l~~~~~ 610 (772)
...+||.||+| ||=|..|..... ..+.+|||+++.++-|++.. +.. .+-...++.+|... ..+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~--~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS--ESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC--SHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc--chhhh
Confidence 66899999999 888999988753 48999999999999998776 100 01234567777642 11110
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc----HHHHHHHHHccCCCcEE
Q 004133 611 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLF 686 (772)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~----~~fl~~~~~~L~~~Gil 686 (772)
.+ .....+||+|=+=. + -+-.|-+ ..||+++.+.|+|||+|
T Consensus 138 --------~~-----------------~~~~~~FDvVScQF-a---------lHY~Fese~~ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 138 --------KL-----------------PPRSRKFDVVSCQF-A---------LHYAFESEEKARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp --------TS-----------------SSTTS-EEEEEEES-----------GGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred --------hc-----------------cccCCCcceeehHH-H---------HHHhcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 00 01135899996511 1 1223332 45999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHH--------hcc-ceEEEeecCC------ceEEEEEecCCC
Q 004133 687 IVNLVSRSQATKDMVISRMKM--------VFN-HLFCLQLEED------VNLVLFGLSSES 732 (772)
Q Consensus 687 v~Nl~~~~~~~~~~v~~~l~~--------vF~-~v~~~~~~~~------~N~vl~a~~~~~ 732 (772)
+.-++. .. .++.+|++ .|. .+|.+..+.+ ++...|-+....
T Consensus 183 IgT~~d--~~---~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v 238 (331)
T PF03291_consen 183 IGTTPD--SD---EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAV 238 (331)
T ss_dssp EEEEE---HH---HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCS
T ss_pred EEEecC--HH---HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcC
Confidence 987743 22 24555555 222 5888877666 777778776653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.24 Score=52.78 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=96.2
Q ss_pred ecCCccchHHHHHHHHHHh----hhhhhhhhhcccCCCCeEEEEccccc-HHHHHHHHhCCC--CcEEEEEcCHHHHHHH
Q 004133 510 VYHGYLASSYHMGIISGFT----LISSYLESVASVGKSVKAVVIGLGAG-LLPMFLHECMPF--VGIEAVELDLTMLNLA 582 (772)
Q Consensus 510 ~d~~~L~~~Y~~~m~~~l~----l~~~~~~~~~~~~~~~~vLviGlG~G-~l~~~L~~~~p~--~~i~~VEiDp~v~~vA 582 (772)
+|..||...=.+++=---. ++...+......+.|.+||.|-.|.| .+.-.|..+ |. .+|..+|.+|.-++.+
T Consensus 99 iDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g 177 (311)
T PF12147_consen 99 IDRNYLNAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKG 177 (311)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHH
Confidence 7888888766665521111 11111222223589999999999999 554555555 44 6999999999999998
Q ss_pred HHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCC
Q 004133 583 EDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSG 659 (772)
Q Consensus 583 ~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g 659 (772)
++.- |+ .+-++++.+||.+.-.-.+ -..+++++|+ +|
T Consensus 178 ~~li~~~gL--~~i~~f~~~dAfd~~~l~~------------------------------l~p~P~l~iV--------sG 217 (311)
T PF12147_consen 178 RALIAERGL--EDIARFEQGDAFDRDSLAA------------------------------LDPAPTLAIV--------SG 217 (311)
T ss_pred HHHHHHcCC--ccceEEEecCCCCHhHhhc------------------------------cCCCCCEEEE--------ec
Confidence 8775 66 3446999999988522211 1366889887 12
Q ss_pred CCcCCcCCCc----HHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHH
Q 004133 660 MTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMK 706 (772)
Q Consensus 660 ~s~Pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~ 706 (772)
+ -.-|-+ ..-|.-+.++|.|||.+|.---+-++.+ +++...|.
T Consensus 218 L---~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-e~IAr~Lt 264 (311)
T PF12147_consen 218 L---YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-EMIARVLT 264 (311)
T ss_pred c---hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-HHHHHHHh
Confidence 2 122222 3357778899999999997653344442 33334433
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.067 Score=56.02 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=63.7
Q ss_pred HHHhhcCCCCCCCC--eEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC------C----CCcEEEEee
Q 004133 57 LISLIGAPTSSPPP--QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------R----SDMRWRVMD 124 (772)
Q Consensus 57 l~~~l~~~~~~~~~--~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~------~----~~v~f~~~D 124 (772)
+.+.+.. +++. +|||+-+|.|..+..++..|.. |+++|-++.+....+..+... . .+++.+.+|
T Consensus 78 l~kAvgl---k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 78 VAKAVGI---KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHhCC---CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4444443 4555 9999999999999999999986 999999999887766554331 1 357888888
Q ss_pred ccCcccccCCCccEEEecccccc
Q 004133 125 MTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
..++-.-...+||+|+.--++.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 87742112347999997776654
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.031 Score=56.04 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=66.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC--------CCCcEEEEeeccCcccccCCCccEE
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--------RSDMRWRVMDMTSMQVFMDETFDVI 139 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~--------~~~v~f~~~D~~~l~~~~~~sfDvV 139 (772)
.-.+.|||||.|.+...|+.. +-.-|.|.+|-..+-+..+.+.... .+++.....++...- .+-|.--
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l---pn~f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL---PNFFEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc---cchhhhc
Confidence 468999999999999999887 3345899998887777666554221 235666666554421 1222211
Q ss_pred EecccccccccCcc----chH--HHHHHHHHHHhccccCeEEEEEEc
Q 004133 140 LDKGGLDALMEPEL----GHK--LGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 140 i~~~~l~~l~~~~~----~~~--~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
-..-.+..+.++-- ... .-..++.+..-+|++||.++.++-
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 11112222222110 000 034788999999999999988763
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.093 Score=54.25 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCC-cEEEEeeccCcc--cccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQ--VFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~-v~f~~~D~~~l~--~~~~~sfDvVi~~~ 143 (772)
.++..+||+|.-||.++..+.++|.+.|+++|..-..+..-.+ ..++ +.+...|+..+. .+. +..|++++.-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----NDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh----cCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 4678999999999999999999999999999998866643322 2333 334555666554 122 3567777654
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.|-. ...+|..+..+++++|-++...
T Consensus 153 SFIS----------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 153 SFIS----------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ehhh----------HHHHHHHHHHhcCCCceEEEEe
Confidence 4432 4689999999999999887664
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.074 Score=57.43 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-----CcEEEEeeccCcccccCCCccEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-----DMRWRVMDMTSMQVFMDETFDVI 139 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-----~v~f~~~D~~~l~~~~~~sfDvV 139 (772)
..+.+|||+|.|.|.-...+.+. -..+++.++.|+..-+..-.......+ +..=++.|-..++ ....|++|
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp--~ad~ytl~ 189 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP--AADLYTLA 189 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC--ccceeehh
Confidence 34567999999999888777665 234577888887543322222111111 1222333434444 34567776
Q ss_pred EecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
|. ++-+..+.. +.-+..+++.+..++.|||.++++.-+.+.-.
T Consensus 190 i~---~~eLl~d~~-ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 190 IV---LDELLPDGN-EKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hh---hhhhccccC-cchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 65 344333221 11155599999999999999999998876533
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.28 Score=57.02 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C----CCeEEEEeCCHHH
Q 004133 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G----FHGITNVDFSKVV 103 (772)
Q Consensus 29 ~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g----~~~V~gvDiS~~~ 103 (772)
+|--..|........-|.|.. ..+..++.+.+.. .+..+|.|..||+|.+.....+. + ...++|.++.+..
T Consensus 151 E~ll~~fa~~~~k~~GEfyTP-~~v~~liv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t 226 (489)
T COG0286 151 EYLLRKFAEAEGKEAGEFYTP-REVSELIVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTT 226 (489)
T ss_pred HHHHHHHHHhcCCCCCccCCh-HHHHHHHHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHH
Confidence 455556665532333565554 5677777777764 46679999999999888665553 1 2459999999999
Q ss_pred HHHHHHHhccCCC--CcEEEEeeccCcccc----cCCCccEEEecccccccccCc------------------cchHHHH
Q 004133 104 ISDMLRRNVRDRS--DMRWRVMDMTSMQVF----MDETFDVILDKGGLDALMEPE------------------LGHKLGN 159 (772)
Q Consensus 104 I~~a~~~~~~~~~--~v~f~~~D~~~l~~~----~~~sfDvVi~~~~l~~l~~~~------------------~~~~~~~ 159 (772)
...++.+..-++. ++....+|-..-+.+ ..+.||.|+++..+....... .......
T Consensus 227 ~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (489)
T COG0286 227 YRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADL 306 (489)
T ss_pred HHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHH
Confidence 9888776644433 245566655544412 346799999877664111000 0001137
Q ss_pred HHHHHHHhccccCeEEEEEEc
Q 004133 160 QYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 160 ~~l~ei~rvLkpGG~~ii~~~ 180 (772)
..++.+...|+|||+.-++..
T Consensus 307 af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 307 AFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred HHHHHHHHhcCCCceEEEEec
Confidence 899999999999996655543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.061 Score=63.10 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC--------CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP--------FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p--------~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||..|+|+|.+...+....+ ...+.++|||+..+..|+............++.+|.+..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc
Confidence 456899999999977776665553 147899999999999998775432223467777776654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.28 Score=49.94 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=70.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhcc------------------
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVR------------------ 113 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~---g~~~V~gvDiS~~~I~~a~~~~~~------------------ 113 (772)
+.++..+.......+.++-|..||.|.+.--+.-. ...+|++.|+++.+++.|++++.-
T Consensus 38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 34555555443356789999999999988554332 356799999999999999766210
Q ss_pred -------------------------CCCCcEEEEeeccCcc---cc-cCCCccEEEecccccccccCcc--chHHHHHHH
Q 004133 114 -------------------------DRSDMRWRVMDMTSMQ---VF-MDETFDVILDKGGLDALMEPEL--GHKLGNQYL 162 (772)
Q Consensus 114 -------------------------~~~~v~f~~~D~~~l~---~~-~~~sfDvVi~~~~l~~l~~~~~--~~~~~~~~l 162 (772)
........+.|+++.. .. .....|+|+..-....+.+.+. +..-...||
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 0124568888998833 01 2234699987555544444332 223388999
Q ss_pred HHHHhccccCeEEEE
Q 004133 163 SEVKRLLKSGGKFVC 177 (772)
Q Consensus 163 ~ei~rvLkpGG~~ii 177 (772)
+.++.+|-.++++.+
T Consensus 198 ~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 198 NSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHCCS-TT-EEEE
T ss_pred HHHHhhCCCCcEEEE
Confidence 999999954444444
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.066 Score=60.68 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHH----HHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPM----FLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QD 591 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~----~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~ 591 (772)
..|-+|+..+|.=.. +.+++.....++++|.|=|=|.. ........+++.+||-+|..+-.-.. ..+. =+
T Consensus 346 ~~Yq~Ai~~AL~Drv----pd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~ 420 (649)
T KOG0822|consen 346 DQYQQAILKALLDRV----PDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD 420 (649)
T ss_pred HHHHHHHHHHHHhhC----cccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc
Confidence 458888887754111 11223346678999999995443 33344456799999999987766544 3332 36
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
.+++++-+|-+.|-.- ..+.|+|+..+-.+-.. .=+++|
T Consensus 421 ~~Vtii~~DMR~w~ap---------------------------------~eq~DI~VSELLGSFGD--------NELSPE 459 (649)
T KOG0822|consen 421 NRVTIISSDMRKWNAP---------------------------------REQADIIVSELLGSFGD--------NELSPE 459 (649)
T ss_pred CeeEEEeccccccCCc---------------------------------hhhccchHHHhhccccC--------ccCCHH
Confidence 8999999999998311 25689998766443222 225699
Q ss_pred HHHHHHHccCCCcEEEEEecC------CChhHHHHHHHHHHH--hccceEEEe
Q 004133 672 FLLTVKDALSEQGLFIVNLVS------RSQATKDMVISRMKM--VFNHLFCLQ 716 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~------~~~~~~~~v~~~l~~--vF~~v~~~~ 716 (772)
.|.-+...|+|+||.+=--.+ .++-++.. +..... .|...|.+.
T Consensus 460 CLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~-v~a~~~~~~fe~~YVV~ 511 (649)
T KOG0822|consen 460 CLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQE-VKATNDPNAFEAPYVVL 511 (649)
T ss_pred HHHHHHhhcCCCceEccchhhhhhcccccHHHHHH-HHhcCCccccccceEEE
Confidence 999999999999998822111 12333333 344443 787766654
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.034 Score=56.61 Aligned_cols=106 Identities=9% Similarity=0.024 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-----CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc------c-cCCC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV------F-MDET 135 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-----g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~------~-~~~s 135 (772)
.++.|+|+|.-+|.-+..+++. +..+|+|||+.-............-.++++++++|..+... . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5689999999999888777653 34679999995433221111111123689999999988541 0 1123
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+|+.-. +|.... ..+.|+....++++|+++++.+..
T Consensus 112 ~vlVilDs--~H~~~h------vl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 112 PVLVILDS--SHTHEH------VLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SEEEEESS------SS------HHHHHHHHHHT--TT-EEEETSHH
T ss_pred ceEEEECC--CccHHH------HHHHHHHhCccCCCCCEEEEEecc
Confidence 34555322 111111 567778899999999999987644
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.5 Score=48.64 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHH---HHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT---MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~---v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
+.+++.||.|+|.=...|+=.+|+.+||.||-... -++.+.+..|+ ++++++.+.+-+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i~~~RaE~~~~~------------ 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENVEIVHGRAEEFGQE------------ 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEEehhhHhhcccc------------
Confidence 68999999999933333555789999999999875 45666777787 6799999988777222
Q ss_pred ccccccccCCCCCCCCCCCCCCCc-eeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~-yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
.+ ||+|..=+... | ..+.+-+...|++||.+++-......+..
T Consensus 133 ----------------------~~~~D~vtsRAva~-----L---------~~l~e~~~pllk~~g~~~~~k~~~~~~e~ 176 (215)
T COG0357 133 ----------------------KKQYDVVTSRAVAS-----L---------NVLLELCLPLLKVGGGFLAYKGLAGKDEL 176 (215)
T ss_pred ----------------------cccCcEEEeehccc-----h---------HHHHHHHHHhcccCCcchhhhHHhhhhhH
Confidence 23 99999865544 1 56777888889998887654433333332
Q ss_pred HHH---HHHHHHhccceEEEeecC
Q 004133 699 DMV---ISRMKMVFNHLFCLQLEE 719 (772)
Q Consensus 699 ~~v---~~~l~~vF~~v~~~~~~~ 719 (772)
... ...+.-.+..++.+.++.
T Consensus 177 ~e~~~a~~~~~~~~~~~~~~~~p~ 200 (215)
T COG0357 177 PEAEKAILPLGGQVEKVFSLTVPE 200 (215)
T ss_pred HHHHHHHHhhcCcEEEEEEeecCC
Confidence 222 222222334555555544
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.1 Score=56.03 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+-||.+|.|.|.|.+|..+.. ..+|.+||.+. |.+.|++-. +-.-.+|+.|+-|-.. +..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiE----die----------- 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIE----DIE----------- 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccc----ccc-----------
Confidence 34568999999999999998885 44999999875 677777765 2223578998877432 222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH---HHHHHHHccCCCcEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS---FLLTVKDALSEQGLFI 687 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~---fl~~~~~~L~~~Gilv 687 (772)
-..+.|+||. +|.+-| ++.+. -+..+++-|+|+|...
T Consensus 240 -------------------LPEk~DviIS-----EPMG~m------L~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 240 -------------------LPEKVDVIIS-----EPMGYM------LVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred -------------------CchhccEEEe-----ccchhh------hhhHHHHHHHHHHHhhcCCCCccc
Confidence 1378999996 443333 33343 3445778999999765
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.35 Score=50.33 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=59.6
Q ss_pred CCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
..++||+||=+.- +|+..|.. .| .+|++||||+.+++.-++.. |+ .++.+..|-++=+.+.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~-~~-~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~-------- 109 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTG-LP-KRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEEL-------- 109 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTT--------
T ss_pred cCCEEEEEcCCcHHHHHHHhhC-CC-CeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHH--------
Confidence 4588999996654 55555533 34 59999999999998876554 66 39999999887765532
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCc-EEEEEecCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVSRS 694 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~G-ilv~Nl~~~~ 694 (772)
..+||+++.|- +....|| .-|+....+.|+..| ...+.+..++
T Consensus 110 -----------------------~~~fD~f~TDP--PyT~~G~---------~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 110 -----------------------RGKFDVFFTDP--PYTPEGL---------KLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp -----------------------SS-BSEEEE-----SSHHHH---------HHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred -----------------------hcCCCEEEeCC--CCCHHHH---------HHHHHHHHHHhCCCCceEEEEEecCc
Confidence 37899999953 2222233 568899999997766 5555554444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.0064 Score=58.31 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=47.4
Q ss_pred CcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 117 DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 117 ~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+.+++-...... |.+++.|+|++.+++.|+.-.+ ...++++++|+|||||++-|..-
T Consensus 30 ~vdlvc~As~e~~-F~dns~d~iyaeHvlEHlt~~E-----g~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 30 EVDLVCRASNESM-FEDNSVDAIYAEHVLEHLTYDE-----GTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred ccchhhhhhhhcc-CCCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHHhCcCcEEEEEcC
Confidence 4455544444556 9999999999999999998755 68999999999999999998753
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.32 Score=55.48 Aligned_cols=112 Identities=12% Similarity=0.176 Sum_probs=82.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+++.+=+|.|..+..|.... .+|++||++|..++.|++.-....-.+++++.+|+.++.....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~------------ 358 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW------------ 358 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc------------
Confidence 44679999999999999998553 5899999999999999988744434559999999999987753
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
....+|+||+|- |..|+ ++++++.+.+ +.|..|+- +.|....+.+.
T Consensus 359 ------------------~~~~~d~VvvDP----PR~G~--------~~~~lk~l~~-~~p~~IvY--VSCNP~TlaRD 404 (432)
T COG2265 359 ------------------EGYKPDVVVVDP----PRAGA--------DREVLKQLAK-LKPKRIVY--VSCNPATLARD 404 (432)
T ss_pred ------------------ccCCCCEEEECC----CCCCC--------CHHHHHHHHh-cCCCcEEE--EeCCHHHHHHH
Confidence 136799999953 23343 4788887776 55555554 44555555444
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.076 Score=50.51 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=44.8
Q ss_pred EEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEc
Q 004133 546 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT 599 (772)
Q Consensus 546 vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~ 599 (772)
++.||.|.|..+.++....|..+|.+||.+|.+.+.+++.+....-++++++..
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~ 55 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNA 55 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 789999999999999999888899999999999999999874322234666654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.24 Score=54.38 Aligned_cols=121 Identities=11% Similarity=0.154 Sum_probs=89.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.....|+.+=.|.|..+.-++... ..+|.++||+|.-++..++..-+.. .+++..+.||+.+++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~----------- 254 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL----------- 254 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-----------
Confidence 346789998888885555555543 2359999999999999999996653 456999999999997663
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 699 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 699 (772)
..+|-||+-... .+.+|+..+.+.|+++|++-+-...++....+
T Consensus 255 ----------------------~~aDrIim~~p~--------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 255 ----------------------GVADRIIMGLPK--------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE 298 (341)
T ss_pred ----------------------ccCCEEEeCCCC--------------cchhhHHHHHHHhhcCcEEEEEeccchhhccc
Confidence 348999982211 34789999999999999999888777666433
Q ss_pred HHHHHHHHhc
Q 004133 700 MVISRMKMVF 709 (772)
Q Consensus 700 ~v~~~l~~vF 709 (772)
.....+....
T Consensus 299 ~~~~~i~~~~ 308 (341)
T COG2520 299 RPEKRIKSAA 308 (341)
T ss_pred chHHHHHHHH
Confidence 3344444444
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.32 Score=49.60 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=93.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHH-----HHHHhhcccCccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-----KFVREMKSSSATD 615 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~-----~~l~~~~~~~~~~ 615 (772)
....|+.||.--|+...++.++... .+|.+||++|.-. .+.+..+.+|.. +=|.+.-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l------ 107 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEAL------ 107 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHc------
Confidence 4578999999999999999988754 4699999998532 233666666543 3332221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcC--CCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD--FVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P-p~~--f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
....+|+|+.|....- .|...- ... -+....++.+...|+++|.|++=+.-
T Consensus 108 ------------------------~~~~~DvV~sD~ap~~--~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 108 ------------------------GGAPVDVVLSDMAPNT--SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ------------------------CCCCcceEEecCCCCc--CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 1345899999987642 232111 111 23455667777899999999988764
Q ss_pred CChhHHHHHHHHHHHhccceEEEeecC----CceEEEEEe
Q 004133 693 RSQATKDMVISRMKMVFNHLFCLQLEE----DVNLVLFGL 728 (772)
Q Consensus 693 ~~~~~~~~v~~~l~~vF~~v~~~~~~~----~~N~vl~a~ 728 (772)
... .+.++..+++.|..|...+... .....++|.
T Consensus 162 g~~--~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~ 199 (205)
T COG0293 162 GED--FEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAK 199 (205)
T ss_pred CCC--HHHHHHHHHHhhceeEEecCccccCCCceEEEEEe
Confidence 322 2557999999999988877532 333445554
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.3 Score=48.63 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=93.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEE----ccHHHHHHhhcccCcccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI----TDGIKFVREMKSSSATDE 616 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i----~Dg~~~l~~~~~~~~~~~ 616 (772)
+..+||.+|..-|+......+.. |+..|.+|||-+ +- +-+...++. .|-.-+.+-..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~--p~~Ga~~i~~~dvtdp~~~~ki~e------- 130 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE--PPEGATIIQGNDVTDPETYRKIFE------- 130 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc--CCCCcccccccccCCHHHHHHHHH-------
Confidence 35689999999999998777765 888999999843 21 122233333 34444332211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC----cHHHHHHHHHccCCCcEEEEEecC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~----~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.-.+.+.|+|+.|...... |+.- -.+.. -.+.|.-+...+.|+|.|++-+|.
T Consensus 131 ---------------------~lp~r~VdvVlSDMapnaT--Gvr~-~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 131 ---------------------ALPNRPVDVVLSDMAPNAT--GVRI-RDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred ---------------------hCCCCcccEEEeccCCCCc--Ccch-hhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 0124789999999876532 3210 11111 122444455667899999999998
Q ss_pred CChhHHHHHHHHHHHhccceEEEeec----CCceEEEEEecCC
Q 004133 693 RSQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLSSE 731 (772)
Q Consensus 693 ~~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~vl~a~~~~ 731 (772)
.+.. ..+..+|+++|..|..++.. +.....++|++-.
T Consensus 187 g~e~--~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 187 GSEE--ALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFK 227 (232)
T ss_pred CCch--HHHHHHHHHHhhhcEeeCCccccccccceeeeeeecc
Confidence 7655 34578999999999988753 3455677777654
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.37 Score=53.50 Aligned_cols=100 Identities=23% Similarity=0.201 Sum_probs=73.2
Q ss_pred eEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEc-cHHHHHHhhcccCcccccccccc
Q 004133 545 KAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT-DGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 545 ~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~-Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
+|+|+|.| -|.++..+.+.++..+|.++|+++.=++.|++++|.. .+..... |...-+.+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t------------- 234 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELT------------- 234 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHh-------------
Confidence 89999999 6888788888888889999999999999999999752 1111111 4444444433
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+..+|++|- .++ ....++.+.+.++++|.+++.-+..
T Consensus 235 -----------------~g~g~D~vie--~~G--------------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 235 -----------------GGRGADVVIE--AVG--------------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred -----------------CCCCCCEEEE--CCC--------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 1356999986 222 1568999999999999988765543
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.25 Score=53.28 Aligned_cols=48 Identities=33% Similarity=0.473 Sum_probs=43.3
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC
Q 004133 541 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT 589 (772)
Q Consensus 541 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~ 589 (772)
....+|||+|.| .|.++...++.+.-.+|.++|+++.-+++|++ ||..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~ 216 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT 216 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe
Confidence 456799999999 78888888999988899999999999999999 9974
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.07 Score=58.09 Aligned_cols=91 Identities=24% Similarity=0.284 Sum_probs=65.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
-..++.+|.|.|.+...+...+|. |.+|+.|..-+-.++.+++ + .+.-+.+|+++= .
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~---~-------------- 234 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD---T-------------- 234 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---Ccceeccccccc---C--------------
Confidence 356899999999888888888876 8889998776666666665 2 267777887552 2
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEE-----eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILII-----DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~Iiv-----D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
++-|+|++ |..+.| + ..||++|++.|.|+|.+++
T Consensus 235 -------------------P~~daI~mkWiLhdwtDed-----------c--vkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 235 -------------------PKGDAIWMKWILHDWTDED-----------C--VKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred -------------------CCcCeEEEEeecccCChHH-----------H--HHHHHHHHHhCCCCCEEEE
Confidence 23467775 333222 1 6799999999999997775
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.12 Score=53.81 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 581 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v 581 (772)
....+|.||+|+|.++.+|.+. +..+|++||+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 4568999999999999999987 44589999999977754
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.28 Score=54.48 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc--cccCCCccEEE
Q 004133 66 SSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--VFMDETFDVIL 140 (772)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~--~~~~~sfDvVi 140 (772)
+.|+-+|||+.+..|.=+.+++.. +-..|++-|.+..-+...+.++.+.+ .+......|...++ .|+. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 578999999999999877777664 33459999999988887777664433 34556667776654 2444 899998
Q ss_pred ecccccc--ccc-Cc------------cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 141 DKGGLDA--LME-PE------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 141 ~~~~l~~--l~~-~~------------~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
....... +.. +. ....+-+++|..+..++++||+++..|.+-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 3322222 111 00 011236788899999999999999988763
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.22 Score=55.39 Aligned_cols=129 Identities=13% Similarity=0.160 Sum_probs=76.9
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 623 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 623 (772)
.++|.+=+|.|.++..|+... .+|.+||+++..++.|++...+..-++++++.+++-++.........+..
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~------- 268 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNR------- 268 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTT-------
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHh-------
Confidence 379999999999988898876 48999999999999999998655457799999998877544321000000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHH
Q 004133 624 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 703 (772)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~ 703 (772)
..........+|+||+|- |..|+ +..+++.+.+ +. =++-+.|....+.+. +.
T Consensus 269 ----------~~~~~~~~~~~d~vilDP----PR~G~--------~~~~~~~~~~-~~----~ivYvSCnP~tlaRD-l~ 320 (352)
T PF05958_consen 269 ----------LKGIDLKSFKFDAVILDP----PRAGL--------DEKVIELIKK-LK----RIVYVSCNPATLARD-LK 320 (352)
T ss_dssp ----------GGGS-GGCTTESEEEE-------TT-S--------CHHHHHHHHH-SS----EEEEEES-HHHHHHH-HH
T ss_pred ----------hhhhhhhhcCCCEEEEcC----CCCCc--------hHHHHHHHhc-CC----eEEEEECCHHHHHHH-HH
Confidence 000001124699999952 33444 4777777764 32 245566666665555 45
Q ss_pred HHHHhc
Q 004133 704 RMKMVF 709 (772)
Q Consensus 704 ~l~~vF 709 (772)
.|.+-|
T Consensus 321 ~L~~~y 326 (352)
T PF05958_consen 321 ILKEGY 326 (352)
T ss_dssp HHHCCE
T ss_pred HHhhcC
Confidence 565533
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.096 Score=54.12 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=71.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+||.||+|.|.+.--|.+..|+ ..|.++|-+|..+++-+++-++.+ .++...+-| +....
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~D-------lt~~~--------- 135 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWD-------LTSPS--------- 135 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhccccee-------ccchh---------
Confidence 38999999999666666666676 899999999999999999988754 334333333 11000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
-. ...+...+|+|.+ =+.|. + ||... ...+.++.+.|+|||.+++-=.
T Consensus 136 --------~~-----~~~~~~svD~it~IFvLSA-----i--~pek~--~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 136 --------LK-----EPPEEGSVDIITLIFVLSA-----I--HPEKM--QSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred --------cc-----CCCCcCccceEEEEEEEec-----c--ChHHH--HHHHHHHHHHhCCCcEEEEeec
Confidence 00 0112356887743 11222 1 22222 6789999999999999986433
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.24 Score=49.65 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=69.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCc---------EEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVG---------IEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~---------i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
....++.-=+|+|+++.-.....++.. +.++|+|+.+++.|++.+ |+ ...+.+...|+.++- ..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~~i~~~~~D~~~l~--~~ 103 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--EDYIDFIQWDARELP--LP 103 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGG--GT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CCceEEEecchhhcc--cc
Confidence 345799999999999876666555555 899999999999999887 44 456899999988763 11
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---CCCcHHHHHHHHHccCCCcEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA---DFVEGSFLLTVKDALSEQGLF 686 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~---~f~~~~fl~~~~~~L~~~Gil 686 (772)
...+|+|+.|.-= |...... .-+-..|++.+++.|++..++
T Consensus 104 -------------------------------~~~~d~IvtnPPy-----G~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 104 -------------------------------DGSVDAIVTNPPY-----GRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp -------------------------------TSBSCEEEEE--S-----TTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred -------------------------------cCCCCEEEECcch-----hhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 2579999996522 2222211 123456888888989884444
Q ss_pred E
Q 004133 687 I 687 (772)
Q Consensus 687 v 687 (772)
+
T Consensus 148 l 148 (179)
T PF01170_consen 148 L 148 (179)
T ss_dssp E
T ss_pred E
Confidence 3
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.18 Score=54.84 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-------CCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-------MPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSS 611 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-------~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~ 611 (772)
....+|+.-.+|+|.+...+.+. .+...+.++|+|+..+.+|+-.+-+. ......+..+|.+.--...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~--- 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI--- 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT---
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc---
Confidence 34457999999999877666553 36679999999999999998765322 2233568888865421110
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC-----------CCCCCcCCcCCCcHHHHHHHHHcc
Q 004133 612 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS-----------SSGMTCPAADFVEGSFLLTVKDAL 680 (772)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~-----------~~g~s~Pp~~f~~~~fl~~~~~~L 680 (772)
...+||+||...-=+.. ......++..-.+..|++.+.+.|
T Consensus 122 ----------------------------~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 173 (311)
T PF02384_consen 122 ----------------------------KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLL 173 (311)
T ss_dssp ----------------------------ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTE
T ss_pred ----------------------------cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhc
Confidence 13679999974311100 000001122223446999999999
Q ss_pred CCCcEEEEEec
Q 004133 681 SEQGLFIVNLV 691 (772)
Q Consensus 681 ~~~Gilv~Nl~ 691 (772)
+++|.+++=+.
T Consensus 174 k~~G~~~~Ilp 184 (311)
T PF02384_consen 174 KPGGRAAIILP 184 (311)
T ss_dssp EEEEEEEEEEE
T ss_pred ccccceeEEec
Confidence 99998776554
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.47 Score=51.45 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=53.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
..++..=+|+|.-+..+.+.+|..+|.++|.||.+++.|++.+. ...+|++++.++-.++.+.+.
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHH
Confidence 46888889999988888888777899999999999999998763 124699999999888766553
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.32 Score=54.03 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=105.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....|||.+...-|.=+.+++.++.+. .|.+-|.+..-+..-+..+ |+ .+.-+...||.+|-++.-
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~------- 309 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEF------- 309 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCccccccccc-------
Confidence 445789999999887778888887664 8889998888777766654 65 467888899997732211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--------------CCcHHHHHHHHHccCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------FVEGSFLLTVKDALSE 682 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~--------------f~~~~fl~~~~~~L~~ 682 (772)
...||=|++|+-.+- .|+-.-++. -+..+.|..+...+++
T Consensus 310 ------------------------~~~fDRVLLDAPCSG--tgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~ 363 (460)
T KOG1122|consen 310 ------------------------PGSFDRVLLDAPCSG--TGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA 363 (460)
T ss_pred ------------------------CcccceeeecCCCCC--CcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC
Confidence 237999999985542 123222222 2467788889999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhccceEEEee
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~ 717 (772)
||+||....+-..+..+.+++.+-.-|+++-..+.
T Consensus 364 GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~ 398 (460)
T KOG1122|consen 364 GGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPT 398 (460)
T ss_pred CcEEEEEeeecchhhhHHHHHHHHHhCCceEeccc
Confidence 99999999888888889999999999998777664
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.3 Score=48.93 Aligned_cols=112 Identities=9% Similarity=0.083 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHH------HHHHHHh-ccCCCCcEEEEeeccCcccccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVI------SDMLRRN-VRDRSDMRWRVMDMTSMQVFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I------~~a~~~~-~~~~~~v~f~~~D~~~l~~~~~~sfD 137 (772)
+++++|+|+=.|.|.++.-+... |. ..|++.-..+... ..++... .....+.+.+-.+...+. +.+..|
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~d 124 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKLD 124 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCccc
Confidence 78999999999999999988775 32 2466655444311 1111111 011234555555555554 445567
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++.....+-+.....++....++...+++.|||||.|++.+.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 6665443333332222233478999999999999999999863
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.49 Score=51.87 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=78.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....++|.||.+.|+.+..|.+.. .+|++||..|.--. +..+++++.+.+|++.|...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-------L~~~~~V~h~~~d~fr~~p~------------- 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-------LMDTGQVEHLRADGFKFRPP------------- 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-------hhCCCCEEEEeccCcccCCC-------------
Confidence 345789999999999999999873 59999996663222 23579999999999998432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC--cEEEEEecCCC---h
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVNLVSRS---Q 695 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~--Gilv~Nl~~~~---~ 695 (772)
...+|++++|+-.. | ...++.+.+-|..| .-+|+|+-=.- -
T Consensus 268 --------------------~~~vDwvVcDmve~--------P------~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~ 313 (357)
T PRK11760 268 --------------------RKNVDWLVCDMVEK--------P------ARVAELMAQWLVNGWCREAIFNLKLPMKKRY 313 (357)
T ss_pred --------------------CCCCCEEEEecccC--------H------HHHHHHHHHHHhcCcccEEEEEEEcCCCCCH
Confidence 25699999998654 2 46677777777554 57788874322 2
Q ss_pred hHHHHHHHHHHHhc
Q 004133 696 ATKDMVISRMKMVF 709 (772)
Q Consensus 696 ~~~~~v~~~l~~vF 709 (772)
+.....++.+.+.+
T Consensus 314 ~~v~~~l~~i~~~l 327 (357)
T PRK11760 314 EEVRQCLELIEEQL 327 (357)
T ss_pred HHHHHHHHHHHHHH
Confidence 22233445555544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.071 Score=51.71 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeeccCcc-cccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ-VFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~----~~~v~f~~~D~~~l~-~~~~~sfDvVi 140 (772)
.+.+|||+|.|--.++-.|... ....|...|-.+..++..++....+ ..++..+..+...-. .....+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4679999999976666444332 4457999999999998876554322 112222222222111 13456999999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccc
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 191 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~ 191 (772)
+..++..-.. ...+.+.|.++|+|.|+-++.+--...-+..+..
T Consensus 109 aADClFfdE~-------h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d 152 (201)
T KOG3201|consen 109 AADCLFFDEH-------HESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD 152 (201)
T ss_pred eccchhHHHH-------HHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence 9877654322 6789999999999999977665444343333333
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.37 Score=49.73 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc--ccCCCccEEEe
Q 004133 66 SSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV--FMDETFDVILD 141 (772)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~--~~~~sfDvVi~ 141 (772)
.+|+.+||-||+++|+...+..+. |. .-|+++++|+..=...... ++.++|+--+.-|+..... +.-.-.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nm-AkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINM-AKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHH-hhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 478999999999999998888876 32 3499999998765555333 3556788888888876430 11223444443
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+-..+....-+.-+..-.||+||.|++.-
T Consensus 233 ---------Dvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 233 ---------DVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ---------cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 22223334555567888999999998764
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.57 Score=50.62 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC---CCCcEEEEeecc----C-cccccCCCccE
Q 004133 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMT----S-MQVFMDETFDV 138 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~---~~~v~f~~~D~~----~-l~~~~~~sfDv 138 (772)
..++||||||.+..-..|... |+ +++|+|+++..++.|++....+ ...++++...-. + +. .+++.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~-~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII-QPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST-T--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh-cccceeeE
Confidence 468999999999665444433 66 7999999999999998887655 235666544221 1 11 23468999
Q ss_pred EEecccccccc
Q 004133 139 ILDKGGLDALM 149 (772)
Q Consensus 139 Vi~~~~l~~l~ 149 (772)
.+|+.-|+.-.
T Consensus 181 tmCNPPFy~s~ 191 (299)
T PF05971_consen 181 TMCNPPFYSSQ 191 (299)
T ss_dssp EEE-----SS-
T ss_pred EecCCccccCh
Confidence 99988887653
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.18 Score=51.35 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCCCeEEEEcccccHHHHHHHH---hC-CCCcEEEEEcCHHHH-HHHHHhcCCCCCCCeEEEEccHHH--HHHhhcccCc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHE---CM-PFVGIEAVELDLTML-NLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSA 613 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~---~~-p~~~i~~VEiDp~v~-~vA~~~Fg~~~~~rl~v~i~Dg~~--~l~~~~~~~~ 613 (772)
-+|..|+.+|.--|+-..|.+. .+ +..+|.+||||..-. ..|.+.-.+ .+|+++++||..+ .+.....
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~--- 105 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM--SPRITFIQGDSIDPEIVDQVRE--- 105 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSSTHHHHTSGS---
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc--cCceEEEECCCCCHHHHHHHHH---
Confidence 4678899999986644444432 33 667999999975332 333333233 5899999999764 2222210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 614 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
........+||.|.+-.- .+ -..-|+.....+++|+.+||
T Consensus 106 ------------------------~~~~~~~vlVilDs~H~~---------~h--vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 106 ------------------------LASPPHPVLVILDSSHTH---------EH--VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ------------------------S----SSEEEEESS-------------SS--HHHHHHHHHHT--TT-EEEE
T ss_pred ------------------------hhccCCceEEEECCCccH---------HH--HHHHHHHhCccCCCCCEEEE
Confidence 011345678888765331 11 14556778999999999985
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.35 Score=49.61 Aligned_cols=99 Identities=23% Similarity=0.342 Sum_probs=70.5
Q ss_pred EEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 546 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 546 vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
|..||+-=|.||.+|.+...-.++.++|+.+.-++-|++.. |+ .++++++.+||++-+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~~~-------------- 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLKPG-------------- 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--GG--------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccCCC--------------
Confidence 57899999999999999977668999999999999999875 55 579999999999976552
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...|.|++- || -.-+-.++|+.....+...--||+.=.
T Consensus 65 -------------------e~~d~ivIA--------GM----GG~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 65 -------------------EDVDTIVIA--------GM----GGELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp -------------------G---EEEEE--------EE-----HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred -------------------CCCCEEEEe--------cC----CHHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 236888871 33 112457788888887876667887543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.26 Score=50.33 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=40.4
Q ss_pred cccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004133 550 GLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 550 GlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
|+|||++ .|..++ ..|.+|||||.-+..|+... |.+ +|+++++||-++......
T Consensus 104 g~gGnti-qfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 104 GVGGNTI-QFALQG---PYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLK 160 (263)
T ss_pred cCCchHH-HHHHhC---CeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHh
Confidence 5555554 333333 36999999999999999886 663 399999999988877764
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.2 Score=51.23 Aligned_cols=105 Identities=22% Similarity=0.173 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc--------CC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA--------GF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VF 131 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~--------g~--~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~ 131 (772)
-.+++|+....|.++..|.+. +. ..|++||+.+ | ..-+.+.-+++|+++.. .|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----M-----aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----M-----APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----C-----CccCceEEeecccCCHhHHHHHHHHh
Confidence 368999999999999887664 11 1299999866 2 23457888999999854 46
Q ss_pred cCCCccEEEecccccccccCc-cc---hHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 132 MDETFDVILDKGGLDALMEPE-LG---HKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~-~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
..+.-|+|++.|.-+.---.+ ++ ..++..+|.-...+|||||.|+.--|...
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 677999999988755321111 01 13477888889999999999987655443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.07 E-value=1.6 Score=45.50 Aligned_cols=107 Identities=19% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc-ccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-QVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l-~~~~~~sfDvVi~~~~l 145 (772)
.+.+||-+|=+.- .|..++-. ..++|+.+|+.+..|+..++.+.+.+.+++....|+.+. |.--.++||+++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~T---- 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFT---- 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEe----
Confidence 5789999995553 33444433 356899999999999999888877777899999999883 3122489999875
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+|.....-+..++......||.-|......++..
T Consensus 119 ----DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 119 ----DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp -------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred ----CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 2232334478899999999997774455555543
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.26 Score=54.10 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcCC-CchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe-eccCcccccCCCccEEEec
Q 004133 66 SSPPPQILVPGCG-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 66 ~~~~~~ILDlGCG-~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~-D~~~l~~~~~~sfDvVi~~ 142 (772)
.+|+.+|+-+|+| -|.++.++++. | .+|+++|.|+.-.+.|++.-. -.++.. |...++ --.+.||+|++.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-----d~~i~~~~~~~~~-~~~~~~d~ii~t 236 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-----DHVINSSDSDALE-AVKEIADAIIDT 236 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-----cEEEEcCCchhhH-HhHhhCcEEEEC
Confidence 3689999999988 34677888884 8 579999999998888865532 123332 222222 112349999874
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
-. . ..+....+.|++||+++++-+.
T Consensus 237 v~-~-------------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 VG-P-------------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CC-h-------------hhHHHHHHHHhcCCEEEEECCC
Confidence 43 2 4667788899999999999766
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.49 Score=53.08 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=71.7
Q ss_pred CCCeEEEEcccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+.++|.-=.|+|.= .++..+.-...+|++-|+||..+++.++...+. +++++++...||...+...
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~---------- 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR---------- 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS----------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc----------
Confidence 345777766677743 345555434459999999999999999986332 2348999999999998632
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||+|=+|-+.+ | ..||..+-+.++.||+|.+-
T Consensus 119 ----------------------~~~fD~IDlDPfGS--------p------~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 119 ----------------------QERFDVIDLDPFGS--------P------APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ----------------------TT-EEEEEE--SS----------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------cccCCEEEeCCCCC--------c------cHhHHHHHHHhhcCCEEEEe
Confidence 36799999987766 3 78999999999999999975
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.6 Score=50.06 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=62.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.-.+..=+|+|+-+..+.+.+|.. +++++|-||..++.|++.+- ..++|++++.+.-..+-.....
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~-~~~~r~~~v~~~F~~l~~~l~~------------ 91 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK-EFDGRVTLVHGNFANLAEALKE------------ 91 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh-ccCCcEEEEeCcHHHHHHHHHh------------
Confidence 456788899999999888888865 69999999999999999863 1258999998875555444331
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCC
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSP 654 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~ 654 (772)
....++|-|++|+--+
T Consensus 92 ----------------~~i~~vDGiL~DLGVS 107 (314)
T COG0275 92 ----------------LGIGKVDGILLDLGVS 107 (314)
T ss_pred ----------------cCCCceeEEEEeccCC
Confidence 1136799999998443
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.087 Score=55.83 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc--------CCCCcEEEEeecc---CcccccCC-
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------DRSDMRWRVMDMT---SMQVFMDE- 134 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~--------~~~~v~f~~~D~~---~l~~~~~~- 134 (772)
..+.+|||+|||.|...+.....|...+...|++...++.-.--+.. ......+...-.+ +......+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 35789999999999999988888866799999999888422110000 0001111111111 11101123
Q ss_pred -CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 135 -TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 135 -sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.||+|.+.-++...... ...+.......++++|+++...
T Consensus 195 ~~ydlIlsSetiy~~~~~------~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSL------AVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCcchh------hhhHhhhhhhcCCccchhhhhh
Confidence 78998888887766542 1222677778889999987653
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.26 Score=50.15 Aligned_cols=108 Identities=12% Similarity=0.187 Sum_probs=68.1
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHh---cCCCC-CCCeEEEEccH-HHHHHhhcccCccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQ-DKSLKVHITDG-IKFVREMKSSSATDEMSV 619 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~---Fg~~~-~~rl~v~i~Dg-~~~l~~~~~~~~~~~~~~ 619 (772)
+||.||.|+|--+.+...++|++.-.--|+|+....--+.| .+++. -+-+.+=+.+. -.+...
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~------------ 95 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELP------------ 95 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccc------------
Confidence 69999999999999999999999999999999986444444 34431 11122211111 111000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.......||+|+. -+.-... |.. ....+++.+.+.|++||+|++-
T Consensus 96 -----------------~~~~~~~~D~i~~--~N~lHI~-----p~~-~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 96 -----------------APLSPESFDAIFC--INMLHIS-----PWS-AVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred -----------------cccCCCCcceeee--hhHHHhc-----CHH-HHHHHHHHHHHhCCCCCEEEEe
Confidence 0112467999986 1111111 111 2478999999999999999953
|
The function of this family is unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 772 | ||||
| 2pxx_A | 215 | Human Putative Methyltransferase Mgc2408 Length = 2 | 4e-21 |
| >pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 772 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 3e-49 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 8e-23 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 8e-14 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-13 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-12 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 3e-12 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 4e-12 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 5e-12 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 3e-11 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 6e-11 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 8e-11 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 2e-10 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 2e-10 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 6e-10 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 1e-09 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 2e-09 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 3e-09 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 3e-09 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 5e-09 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 6e-09 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 6e-09 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 7e-09 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 7e-09 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 7e-09 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 9e-09 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 2e-08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-08 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 2e-08 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 5e-08 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 6e-08 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 8e-08 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 1e-07 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 2e-07 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 2e-07 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 3e-07 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 5e-07 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 6e-07 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 6e-07 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 9e-07 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 1e-06 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 1e-06 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 1e-06 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 2e-06 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 2e-06 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 3e-06 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 4e-06 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 4e-06 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 5e-06 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 6e-06 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 6e-06 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 2e-05 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-04 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 5e-05 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 6e-05 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 6e-05 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 6e-05 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 7e-05 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 1e-04 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 1e-04 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 2e-04 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 2e-04 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 2e-04 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 2e-04 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 3e-04 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 3e-04 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 4e-04 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 4e-04 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 5e-04 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 5e-04 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 3e-49
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
+ E WD+ + ++W+ ++ R L + P +ILV GCGNS LS
Sbjct: 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL-----RPEDRILVLGCGNSALS 57
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143
L+ GF +T+VD+S VV++ M +RW MD+ + F +FDV+L+KG
Sbjct: 58 YELFLGGFPNVTSVDYSSVVVAAMQACY-AHVPQLRWETMDVRKLD-FPSASFDVVLEKG 115
Query: 144 GLDALMEPELGHKLG--------NQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF 195
LDAL+ E +Q LSEV R+L GG+F+ +T A H + + +
Sbjct: 116 TLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYY 175
Query: 196 GWKMSVHAIPQKSSSEPSLQTFMVVADK 223
GW + + + K
Sbjct: 176 GWSLRHATY------GSGFHFHLYLMHK 197
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 8e-23
Identities = 32/194 (16%), Positives = 60/194 (30%), Gaps = 44/194 (22%)
Query: 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD 600
++ +G GA + + + P VELD + L+ ++F + +K+ + D
Sbjct: 88 ASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDD 147
Query: 601 GIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 660
+ A D++I DV +
Sbjct: 148 ARMVAES-------------------------------FTPASRDVIIRDVFAGAI---- 172
Query: 661 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ-ATKDMVISRMKMVFNHLF------ 713
+F F L+ GL++ N S ++ M VF H+
Sbjct: 173 --TPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPP 230
Query: 714 CLQLEEDVNLVLFG 727
L+ N++L G
Sbjct: 231 MLKGRRYGNIILMG 244
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 8e-14
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 19/156 (12%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
+ W+K + W ++ L+ +S P + LVPGCG +
Sbjct: 32 EEGGWEKCWEEEITP----WDQGRAT--PLIVHLVDT-SSLPLGRALVPGCGGGHDVVAM 84
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWRVMDMTSMQVFMDETFDVILDKG 143
+ +D S+ + + D+ + E FD+I D
Sbjct: 85 ASPERF-VVGLDISESAL-AKANETYGSSPKAEYFSFVKEDVFTW--RPTELFDLIFDYV 140
Query: 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179
A+ + + + LLK G+ + L
Sbjct: 141 FFCAIEPE-----MRPAWAKSMYELLKPDGELITLM 171
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 15/137 (10%)
Query: 45 EWYAEW----PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFS 100
DP LI + IL G G R + HL G I ++ +
Sbjct: 14 FDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQ-IEGLEPA 72
Query: 101 KVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQ 160
+ ++ + + + +T + + + +L L + EL
Sbjct: 73 ----TRLVELARQTHPSVTFHHGTITDLS-DSPKRWAGLLAWYSLIHMGPGELP-----D 122
Query: 161 YLSEVKRLLKSGGKFVC 177
L ++ ++ GG +
Sbjct: 123 ALVALRMAVEDGGGLLM 139
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 2e-12
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 16/140 (11%)
Query: 43 SFEWYAE-WPQLRDPLISLIGAPT---SSPPP--QILVPGCGNSRLSEHLYDAGFHGITN 96
E YA+ W L + G + P +IL GCG R+ +L G +
Sbjct: 15 HSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHD-VLG 73
Query: 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHK 156
D ++ +D + RW V D++ Q + FD+I+ G + + +
Sbjct: 74 TDLD----PILIDYAKQDFPEARWVVGDLSVDQ-ISETDFDLIVSAGNVMGFLAEDGREP 128
Query: 157 LGNQYLSEVKRLLKSGGKFV 176
L+ + R L + G+ V
Sbjct: 129 A----LANIHRALGADGRAV 144
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 3e-12
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 24/175 (13%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ + + F +S E+ + L L+ + ++L CG S L D
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLED 58
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGG 144
GF + VD S+ DM+ R + R S++ + V D + F D+TFD ++
Sbjct: 59 YGFE-VVGVDISE----DMIRKAREYAKSRESNVEFIVGDARKLS-FEDKTFDYVIFIDS 112
Query: 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKM 199
+ EL NQ EV+R+LK GKF+ L L P+ + +
Sbjct: 113 IVHFEPLEL-----NQVFKEVRRVLKPSGKFIMYF----TDLRELLPRLKESLVV 158
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 4e-12
Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 15/164 (9%)
Query: 20 QTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGN 79
+ + F E+ +K + + W I ++L GCG+
Sbjct: 5 ECMTKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGD 64
Query: 80 SRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQVFMDETFD 137
+ L G+ VD S M++ + + D+ + D++S+ F +E F+
Sbjct: 65 GYGTYKLSRTGYK-AVGVDIS----EVMIQKGKERGEGPDLSFIKGDLSSLP-FENEQFE 118
Query: 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181
I+ L+ EP + L+E+KR+LKS G L
Sbjct: 119 AIMAINSLEWTEEPL-------RALNEIKRVLKSDGYACIAILG 155
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 5e-12
Identities = 30/133 (22%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
YAE L +G +IL GCG +E + AGF + D S
Sbjct: 22 TAYAERQPRSATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFD-VDATDGSP--- 75
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSE 164
++ R R M + + +D + L + EL L
Sbjct: 76 -ELAAE-ASRRLGRPVRTMLFHQLD--AIDAYDAVWAHACLLHVPRDELA-----DVLKL 126
Query: 165 VKRLLKSGGKFVC 177
+ R LK GG F
Sbjct: 127 IWRALKPGGLFYA 139
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-11
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 25/158 (15%)
Query: 31 WDKFFTIRGIGDSFE---WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLY 87
WD+ F+ E + P +IL G R + L
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQI-------------PQGKILCLAEGEGRNACFLA 48
Query: 88 DAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147
G+ +T VD S V ++ + + ++ + + ++ I+ +
Sbjct: 49 SLGYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD-IVADAWEGIVS---IFC 103
Query: 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185
+ L + +V + LK GG F+ A +
Sbjct: 104 HLPSSLRQQ----LYPKVYQGLKPGGVFILEGFAPEQL 137
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 6e-11
Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 25/153 (16%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
E +D + E + + ++L CG + L +
Sbjct: 10 EYYDTIYR-----RRIERVKAEIDFVEEIFKEDAKR---EVRRVLDLACGTGIPTLELAE 61
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGG 144
G+ + +D + +ML RR ++R+ + + D+ + FD +
Sbjct: 62 RGYE-VVGLDLHE----EMLRVARRKAKERNLKIEFLQGDVLEIAF--KNEFDAVTMFFS 114
Query: 145 -LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
+ E +L + S+V LK GG F+
Sbjct: 115 TIMYFDEEDL-----RKLFSKVAEALKPGGVFI 142
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 8e-11
Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 33/175 (18%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
++++F + F + +E ++ L P + + G G R + L
Sbjct: 22 NEYERWFLVH----RFAYLSELQAVKCLL----------PEGRGVEIGVGTGRFAVPLKI 67
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148
V+ S+ M R R + ++ DE+FD L + +
Sbjct: 68 K-----IGVEPSE----RMAEI-ARKR-GVFVLKGTAENLP-LKDESFDFALMVTTICFV 115
Query: 149 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 203
+PE + L E R+LK GG + + LG + K + +A
Sbjct: 116 DDPE-------RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNA 163
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-10
Identities = 22/157 (14%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125
S+ +L G G ++ + ++ S + + + + + D+
Sbjct: 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI 80
Query: 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185
+ F DE+ + G + + + ++ + + E+KR+LK GG L
Sbjct: 81 RKLP-FKDESMSFVYSYGTIFHMRKNDV-----KEAIDEIKRVLKPGGLACINFLTTKD- 133
Query: 186 LGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVAD 222
++ G K+ Q E + +++ + +
Sbjct: 134 -----ERYNKGEKIGEGEFLQLERGEKVIHSYVSLEE 165
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 21/154 (13%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+D F I + + ++ + +L G G L+ L
Sbjct: 14 HTYDSFVQGEDIQYKEVF-----AHYEDILEDVVNK---SFGNVLEFGVGTGNLTNKLLL 65
Query: 89 AGFHGITNVDFSKVVISDMLRR-NVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147
AG + ++ S+ +M + + D S +V + D I+
Sbjct: 66 AGRT-VYGIEPSR----EMRMIAKEKLPKEFSITEGDFLSFEV--PTSIDTIVSTYAFHH 118
Query: 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181
L + E +++ +LL GGK V
Sbjct: 119 LTDDEKN-----VAIAKYSQLLNKGGKIVFADTI 147
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 6e-10
Identities = 26/141 (18%), Positives = 56/141 (39%), Gaps = 24/141 (17%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR----------NVRDRSDMRWRVMDM 125
GCG+ ++S L G+ +T +D + + +R N + ++V +
Sbjct: 38 GCGSGKISLELASKGYS-VTGIDINS----EAIRLAETAARSPGLNQKTGGKAEFKVENA 92
Query: 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185
+S+ F D +FD + + L ++ +P+ ++ + EV R+LK G +
Sbjct: 93 SSLS-FHDSSFDFAVMQAFLTSVPDPKER----SRIIKEVFRVLKPGAYLYLVEF--GQN 145
Query: 186 LGLLFPKFRFGWKMSVHAIPQ 206
L + R+ +
Sbjct: 146 WHLKLYRKRYLH--DFPITKE 164
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-09
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125
P + L GCGN R S +L G+ + D + + I + R ++ RV+D+
Sbjct: 32 KPGKTLDLGCGNGRNSLYLAANGYD-VDAWDKNAMSI-ANVERIKSIENLDNLHTRVVDL 89
Query: 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179
++ D +D IL L L + ++ ++R K GG + +
Sbjct: 90 NNLT--FDRQYDFILSTVVLMFLEAKTIP-----GLIANMQRCTKPGGYNLIVA 136
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
+ ++ Q + L+ L+ P IL GCG +L+E + +G + D +
Sbjct: 37 DKHSFVWQYGEDLLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGAE-VLGTDNA---- 88
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSE 164
+ M+ + ++ + + V D + +V D+ D + L + EPE ++
Sbjct: 89 ATMIEKARQNYPHLHFDVADARNFRV--DKPLDAVFSNAMLHWVKEPE-------AAIAS 139
Query: 165 VKRLLKSGGKFVCLTLA 181
+ + LKSGG+FV
Sbjct: 140 IHQALKSGGRFVAEFGG 156
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 38/191 (19%)
Query: 1 MGKKKKNQSSSSSSATDLLQTLGDFTSKENW-DKFFT-----IRGIGDSFEWYAEWPQLR 54
M + + + A LL ++G+ ++ D+ + D E+
Sbjct: 20 MSNQLERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRDLIQDADGTSEAREFATRT 79
Query: 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML------ 108
P +L G RL+ D G+ +T ++ S + +L
Sbjct: 80 GP-----------VSGPVLELAAGMGRLTFPFLDLGWE-VTALELS----TSVLAAFRKR 123
Query: 109 --RRNVRDRSDMRWRVMDMTSMQVFMDETFD-VILDKGGLDALMEPELGHKLGNQYLSEV 165
R DM++ + D+ F V++ G ++ L E + + V
Sbjct: 124 LAEAPADVRDRCTLVQGDMSAFAL--DKRFGTVVISSGSINELDEADR-----RGLYASV 176
Query: 166 KRLLKSGGKFV 176
+ L+ GGKF+
Sbjct: 177 REHLEPGGKFL 187
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 28/147 (19%), Positives = 43/147 (29%), Gaps = 21/147 (14%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
+D F+ RG YA L+ SS +L CG EH
Sbjct: 12 YDLFYLGRGKD-----YAAEASDIADLVRSRTPEASS----LLDVACGTGTHLEHFTKEF 62
Query: 91 FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG-LDALM 149
++ S DML + D DM ++ F ++ + L
Sbjct: 63 GD-TAGLELS----EDMLTHARKRLPDATLHQGDMRDFRL--GRKFSAVVSMFSSVGYLK 115
Query: 150 EPELGHKLGNQYLSEVKRLLKSGGKFV 176
E ++ L+ GG V
Sbjct: 116 TTEELGAA----VASFAEHLEPGGVVV 138
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 5e-09
Identities = 23/156 (14%), Positives = 58/156 (37%), Gaps = 8/156 (5%)
Query: 32 DKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF 91
D T+ +++++ ++ A P ++L GCG R S +L G+
Sbjct: 84 DLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGY 143
Query: 92 HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEP 151
+T+ D ++ I+ + ++ ++ + D+ + + E +D I+ L
Sbjct: 144 D-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANI--QENYDFIVSTVVFMFLNRE 200
Query: 152 ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187
+ + +K GG + + + +
Sbjct: 201 RV-----PSIIKNMKEHTNVGGYNLIVAAMSTDDVP 231
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 6e-09
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 15/126 (11%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127
P +L G G L G V+ S+ ML R + W +
Sbjct: 36 PGESLLEVGAGTGYWLRRLPYPQKVG---VEPSE----AMLAVGRRRAPEATWVRAWGEA 88
Query: 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187
+ F E+FDV+L L+ + + E L E +R+L+ GG V L
Sbjct: 89 LP-FPGESFDVVLLFTTLEFVEDVERV-------LLEARRVLRPGGALVVGVLEALSPWA 140
Query: 188 LLFPKF 193
L+ +
Sbjct: 141 ALYRRL 146
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 6e-09
Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127
P ++L G G + S L + GF + VD SK +ML R++
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQERGFE-VVLVDPSK----EMLEVA-REKGVKNVVEAKAED 107
Query: 128 MQVFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186
+ F F+ +L G L + + SE++R+L G + L
Sbjct: 108 LP-FPSGAFEAVLALGDVLSYVENKDKA-------FSEIRRVLVPDGLLIATVDNFYTFL 159
Query: 187 GLLFPKFRF 195
+ K +
Sbjct: 160 QQMIEKDAW 168
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 7e-09
Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 21/153 (13%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
++++ + + + EW +L+ L +L GCG + + G
Sbjct: 14 FEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQK-------TVLDLGCGFGWHCIYAAEHG 66
Query: 91 FHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148
+ +D S ML + + + + + + ++V+L L +
Sbjct: 67 AKKVLGIDLS----ERMLTEAKRKTTSPVVCYEQKAIEDIA-IEPDAYNVVLSSLALHYI 121
Query: 149 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181
+ +V LKS G F+
Sbjct: 122 ASFD-------DICKKVYINLKSSGSFIFSVEH 147
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 27/169 (15%), Positives = 45/169 (26%), Gaps = 23/169 (13%)
Query: 9 SSSSSSATDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSP 68
+ SS++A G+ +D + Y L+ +S
Sbjct: 2 AHSSATAGPQADYSGEIAEL--YDLVH-----QGKGKDYHREAADLAALVRRHSPKAAS- 53
Query: 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128
+L CG HL D+ + ++ S +DML R D DM
Sbjct: 54 ---LLDVACGTGMHLRHLADSFGT-VEGLELS----ADMLAIARRRNPDAVLHHGDMRDF 105
Query: 129 QVFMDETFDVILDKGG-LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
+ F + + L L + G V
Sbjct: 106 SL--GRRFSAVTCMFSSIGHLAGQAELDAA----LERFAAHVLPDGVVV 148
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 7e-09
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 18/166 (10%)
Query: 24 DFTSKENWDKFF--TIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSR 81
D + W++++ T+ W A + + +P ++ CGN
Sbjct: 12 DINVADAWEQYWNKTLVNSTPVL-WDANVERAVVVDLPRFE-LLFNPELPLIDFACGNGT 69
Query: 82 LSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSM---QVFMDETF 136
++ L + +D S L +++ +R++D E
Sbjct: 70 QTKFLSQFFPR-VIGLDVS----KSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIG 124
Query: 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182
D + + + ++ LL G + L
Sbjct: 125 DANI----YMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 9e-09
Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 26/157 (16%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+D F + P + L + + +L G + HL
Sbjct: 20 SEYDATF-------VPYMDSAAPAALERLRAG------NIRGDVLELASGTGYWTRHLSG 66
Query: 89 AGFHGITNVDFSKVVISDMLRR-NVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147
+T +D S ++M+ ++ +R D+ D +D + L
Sbjct: 67 LADR-VTALDGS----AEMIAEAGRHGLDNVEFRQQDLFDWTP--DRQWDAVFFAHWLAH 119
Query: 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184
+ + + V+ + GG + + +
Sbjct: 120 VPDDRFE-----AFWESVRSAVAPGGVVEFVDVTDHE 151
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 27/171 (15%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ W R ++ I P ++L GCG L L D
Sbjct: 22 QAWIDAV--RHGAIESRRQVTDQ----AILLAILGR---QPERVLDLGCGEGWLLRALAD 72
Query: 89 AGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146
G VD ++ R + +V + + +D+I
Sbjct: 73 RGIE-AVGVDGD----RTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLIC---ANF 124
Query: 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 197
AL+ ++ + LS ++ LL GG V TL H + ++ GW
Sbjct: 125 ALLHQDII-----ELLSAMRTLLVPGGALVIQTL---HPWSVADGDYQDGW 167
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 21/141 (14%)
Query: 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101
+ + AEWP LR L + G +I+ GCG ++ G + +D S
Sbjct: 24 EGLDGAAEWPALRAMLPEVGGL-------RIVDLGCGFGWFCRWAHEHGASYVLGLDLS- 75
Query: 102 VVISDMLR--RNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGN 159
ML R + + + D+ + ++FD+ L + +
Sbjct: 76 ---EKMLARARAAGPDTGITYERADLDKLH-LPQDSFDLAYSSLALHYVEDVA------- 124
Query: 160 QYLSEVKRLLKSGGKFVCLTL 180
+ V + L GG FV T
Sbjct: 125 RLFRTVHQALSPGGHFVFSTE 145
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 26/152 (17%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
+DK + Y +W L CG L+E+L
Sbjct: 10 YDKLI------RADVDYKKWSDFIIEKCVENNLVFDD----YLDLACGTGNLTENLCPKF 59
Query: 91 FHGITNVDFSKVVISDML---RRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGG-L 145
+ VD S+ +ML R + R D++++ ++ FD+I
Sbjct: 60 KN-TWAVDLSQ----EMLSEAENKFRSQGLKPRLACQDISNLN--INRKFDLITCCLDST 112
Query: 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177
+ +++ + L +Y V LK GG F+
Sbjct: 113 NYIIDSD---DL-KKYFKAVSNHLKEGGVFIF 140
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 18/168 (10%)
Query: 39 GIGDSFEWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNV 97
IG + ++ + +I+L+ P I G G S L + G + V
Sbjct: 7 SIGKQYSQTRVPDIRIVNAIINLLNLP---KGSVIADIGAGTGGYSVALANQGLF-VYAV 62
Query: 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKL 157
+ S M ++ + W ++ D++ D ++ + E
Sbjct: 63 EPS----IVMRQQ-AVVHPQVEWFTGYAENLA-LPDKSVDGVISILAIHHFSHLEKS--- 113
Query: 158 GNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 205
E++R+++ G + L+ F F W+ ++ +P
Sbjct: 114 ----FQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLP 157
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 32/167 (19%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLI---------SLIGAPTSSPPPQILVPGC 77
S + F ++ + R I S+ A + P IL G
Sbjct: 2 SLSEIKRKFD--------AVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGA 53
Query: 78 GNSRLSEHLYDAGFHG-ITNVDFSKVVISDML---RRNVRDRSDMRWRVMDMTSMQVFMD 133
G LS L + T VD S+ ML + R +++ D + +
Sbjct: 54 GTGLLSAFLMEKYPEATFTLVDMSE----KMLEIAKNRFRGNLKVKYIEADYSKYD--FE 107
Query: 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
E +D+++ + L + + + +LK G F+ L
Sbjct: 108 EKYDMVVSALSIHHLEDEDKK-----ELYKRSYSILKESGIFINADL 149
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 8e-08
Identities = 13/102 (12%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDET 135
G G R++++L + ++ K ++ + +R + ++ + M + T
Sbjct: 101 GAGIGRITKNLLTKLYATTDLLEPVKHML-EEAKRELAGMPVGKFILASMETAT-LPPNT 158
Query: 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177
+D+I+ + L + + ++ ++ L G
Sbjct: 159 YDLIVIQWTAIYLTDADF-----VKFFKHCQQALTPNGYIFF 195
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 21/144 (14%)
Query: 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFS 100
++ + L L P P ++L GCG + L IT++D S
Sbjct: 14 EALRLSEQAETLEKLLHHDTVYP---PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDIS 70
Query: 101 KVVISDML---RRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGH 155
+ L R N ++++ ++ S+ F D +FD I L+ L PE
Sbjct: 71 ----PESLEKARENTEKNGIKNVKFLQANIFSLP-FEDSSFDHIFVCFVLEHLQSPE--- 122
Query: 156 KLGNQYLSEVKRLLKSGGKFVCLT 179
+ L +K++LK GG +
Sbjct: 123 ----EALKSLKKVLKPGGTITVIE 142
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 20/143 (13%)
Query: 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKVVIS 105
+ LRD +++ + +L GCG + DA +D SK
Sbjct: 64 AGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK---- 119
Query: 106 DMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 165
++ + + + V + F D + D I+ + A E+
Sbjct: 120 VAIKAAAKRYPQVTFCVASSHRLP-FSDTSMDAIIR---IYAP-----------CKAEEL 164
Query: 166 KRLLKSGGKFVCLTLAESHVLGL 188
R++K GG + T H++ L
Sbjct: 165 ARVVKPGGWVITATPGPRHLMEL 187
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 34/161 (21%)
Query: 31 WDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG 90
W + IGD+ AE+ + L+ L+ ++L CG S L + G
Sbjct: 31 WQLY-----IGDTRSRTAEY---KAWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEEG 79
Query: 91 FHGITNVDFSKVVISDML---RRNVRDR-----------SDMRWRVMDMTSMQVFMDETF 136
F +T+VD S ML + +R + W +D V + F
Sbjct: 80 FS-VTSVDAS----DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD---VPAGDGF 131
Query: 137 DVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
D ++ G L + + L + +++ GG V
Sbjct: 132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 3e-07
Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR-SDMRWRVM 123
P L G G R++ L G+ +D + ML R+ + ++
Sbjct: 39 EEPVFLELGVGTGRIALPLIARGYR-YIALDAD----AAMLEVFRQKIAGVDRKVQVVQA 93
Query: 124 DMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT-LAE 182
D ++ DE+ ++ + + L+E R+LK GG + AE
Sbjct: 94 DARAIP-LPDESVHGVIVVHLWHLVPDWPKV-------LAEAIRVLKPGGALLEGWDQAE 145
Query: 183 SHVLGLLFPKFR 194
+ L ++R
Sbjct: 146 ASPEWTLQERWR 157
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR---SDMRWR 121
+ +I GCG + L A + IT +D I ++ N ++
Sbjct: 45 TDDAKIADIGCGTGGQTLFL--ADYVKGQITGIDLFPDFI-EIFNENAVKANCADRVKGI 101
Query: 122 VMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
M ++ F +E D+I +G + + + ++E + LK GG
Sbjct: 102 TGSMDNLP-FQNEELDLIWSEGAIYNIGFE--------RGMNEWSKYLKKGGFIA 147
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 6e-07
Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 19/118 (16%)
Query: 63 APTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122
+ +P ++L GCG+ + DFS ++L+ +
Sbjct: 43 SRLLTPQTRVLEAGCGHGPDAARFGPQAAR-WAAYDFS----PELLKLARANAPHADVYE 97
Query: 123 MDMTSMQVFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179
+ F +I+ + G + + + L F+ +
Sbjct: 98 WNGKGELPAGLGAPFGLIVSRRGPTS-------------VILRLPELAAPDAHFLYVG 142
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 6e-07
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDR---SDMRWR 121
+ I GCG + L AG +T +DF I D+ RN R + +
Sbjct: 45 TEKSLIADIGCGTGGQTMVL--AGHVTGQVTGLDFLSGFI-DIFNRNARQSGLQNRVTGI 101
Query: 122 VMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
V M + F +E D+I +G + + + L+E ++ LK GG
Sbjct: 102 VGSMDDLP-FRNEELDLIWSEGAIYNIGFE--------RGLNEWRKYLKKGGYLA 147
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 9e-07
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 22/141 (15%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
+ E + L + + L GC +E L +T +D I
Sbjct: 32 NPF-ERERHTQLLRLSLSSG---AVSNGLEIGCAAGAFTEKLAPHCKR-LTVIDVMPRAI 86
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALME-----PELGHKLGN 159
+ + S + W D+ Q E FD+I+ + E ++
Sbjct: 87 -GRACQRTKRWSHISWAATDIL--QFSTAELFDLIV-------VAEVLYYLEDMTQMR-- 134
Query: 160 QYLSEVKRLLKSGGKFVCLTL 180
+ + ++L GG V +
Sbjct: 135 TAIDNMVKMLAPGGHLVFGSA 155
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML----RRNVRDRSDMRWRVM 123
P +I GCG + L D + +T VD S +ML + + + + V
Sbjct: 33 PGKRIADIGCGTGTATLLLAD-HYE-VTGVDLS----EEMLEIAQEKAMETNRHVDFWVQ 86
Query: 124 DMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
DM ++ + + + L+ L + RLL GGK +
Sbjct: 87 DMRELE-LPEPVDAITILCDSLNYLQTEADVKQT----FDSAARLLTDGGKLL 134
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 31/159 (19%)
Query: 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSE 84
+ I G + L+ ++L G ++
Sbjct: 7 HHHHHHMYVTSQIHAKGSDLAKLMQIAALK-------------GNEEVLDVATGGGHVAN 53
Query: 85 HLYDAGFHGITNVDFSKVVISDML---RRNVRDR--SDMRWRVMDMTSMQVFMDETFDVI 139
+ D ++ D+L R + + + D M F DE F ++
Sbjct: 54 AFAPFVKK-VVAFDLTE----DILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIV 107
Query: 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178
+ P +SE R+LK GG+ + +
Sbjct: 108 TCRIAAHHFPNPASF-------VSEAYRVLKKGGQLLLV 139
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 49/178 (27%)
Query: 545 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 596
+ +++G G G L E + +E V++D ++ +A+ + G D +
Sbjct: 80 RVLIVGGGEGAT---LREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVL 136
Query: 597 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 656
I D ++ + R D++I +D D
Sbjct: 137 VIDDARAYLERTEE--------------------------------RYDVVI--IDLTD- 161
Query: 657 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV---NLVSRSQATKDMVISRMKMVFNH 711
G PA F VK L+ G+ + ++ +V ++ F +
Sbjct: 162 PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRY 219
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 60 LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-- 117
L P + L G G R+++ L F + VD ++ + + + +
Sbjct: 71 LREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFL-VQAKTYLGEEGKRV 129
Query: 118 MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177
+ + +++DVI + + L + L ++L K L+ G V
Sbjct: 130 RNYFCCGLQDFT-PEPDSYDVIWIQWVIGHLTDQHL-----AEFLRRCKGSLRPNGIIVI 183
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQVFMD 133
GCG AG VD ++V I+D R N++ R + +R D + +
Sbjct: 72 GCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 131
Query: 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLL 189
+ FDVI + + + + R L+ GG F+ + +L
Sbjct: 132 KEFDVISSQFSFHYAFSTS---ESLDIAQRNIARHLRPGGYFIMTVPSRDVILERY 184
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDET 135
GCGN ++L + + +D + L+ V+++ D + D D +
Sbjct: 25 GCGNGFYCKYLLEFATK-LYCIDINV----IALKE-VKEKFDSVITLSDPKE---IPDNS 75
Query: 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178
D IL + + + +SEVKR+LK G+ + +
Sbjct: 76 VDFILFANSFHDMDDKQ-------HVISEVKRILKDDGRVIII 111
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 25/164 (15%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ K Y + +I+ G + G G LS L
Sbjct: 11 KKGAKNMDEISKTLFAPIYPII---AENIINRFGIT----AGTCIDIGSGPGALSIALAK 63
Query: 89 AGFHGITNVDFSKVVISDML---RRNVRDR---SDMRWRVMDMTSMQVFMDETFDVILDK 142
I +DFSK M +N+ D ++ D+ ++ D D+I+ +
Sbjct: 64 QSDFSIRALDFSK----HMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSR 118
Query: 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186
G + + E+ R+LKSGGK + L
Sbjct: 119 GSVFFWEDVA-------TAFREIYRILKSGGKTYIGGGFGNKEL 155
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDML---RRNVRDR--SDMRWRVMDMTSMQV 130
G G + VD + +M+ +++ ++R++ S+
Sbjct: 29 GAGAGHTALAFSPYVQE-CIGVDAT----KEMVEVASSFAQEKGVENVRFQQGTAESLP- 82
Query: 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178
F D++FD+I + + + + EV R+LK G+F+ +
Sbjct: 83 FPDDSFDIITCRYAAHHFSDVR-------KAVREVARVLKQDGRFLLV 123
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 5e-06
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 33/174 (18%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEW--PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSE 84
+ E+W + + R I ++ E L+ L + + ++ P CG + +
Sbjct: 32 TLEDWKEKWVTRHIS----FHQEQGHQLLKKHLDTFLKGQ---SGLRVFFPLCGKAIEMK 84
Query: 85 HLYDAGFHGITNVDFSKVVISDMLRRNVRD------------------RSDMRWRVMDMT 126
D G + V+ S++ I + + +
Sbjct: 85 WFADRGHT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143
Query: 127 SMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
+ FD I D+G L A+ + Y + LL+ +++ L
Sbjct: 144 DLPRANIGKFDRIWDRGALVAINPGDHDR-----YADIILSLLRKEFQYLVAVL 192
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 47/151 (31%)
Query: 545 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYFGFT----QDKSLKVH 597
+ ++IG G G + L E + +E V++D ++ ++ +F D V
Sbjct: 98 RVLIIGGGDGGV---LREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVR 154
Query: 598 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS 657
+ DG+ FVR+ + D++I +D+ D +
Sbjct: 155 VGDGLAFVRQ-------------------------------TPDNTYDVVI--IDTTDPA 181
Query: 658 SGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688
PA+ +F V L G+
Sbjct: 182 G----PASKLFGEAFYKDVLRILKPDGICCN 208
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 41/121 (33%)
Query: 572 VELDLTMLNLAEDYFGFT----QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITS 627
E+D ++ A Y T D ++ I +G ++VR+ K+
Sbjct: 120 CEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKN----------------- 162
Query: 628 NNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687
D++I +DS D ++G F DAL E G+F
Sbjct: 163 ---------------EFDVII--IDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFS 202
Query: 688 V 688
Sbjct: 203 A 203
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 76 GCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMD 133
G G ++ +G +D ++ +M V + + + D+ + + F +
Sbjct: 63 GSGLGGGCMYI--NEKYGAHTHGIDICSNIV-NMANERVSGNNKIIFEANDILTKE-FPE 118
Query: 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
FD+I + + AL N+ + + LK G +
Sbjct: 119 NNFDLIYSRDAILALSLENK-----NKLFQKCYKWLKPTGTLL 156
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 5e-05
Identities = 66/456 (14%), Positives = 127/456 (27%), Gaps = 135/456 (29%)
Query: 202 HAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEALESENQ- 260
H I K + +L+ F + K+ V F L N F + +++E +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMV-----QKFVEEVLR--INYKF-LMSPIKTEQRQ 104
Query: 261 ---TRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDAR 317
R Y D LY+ D Q+ AK ++ R +
Sbjct: 105 PSMMTRMYIEQRDRLYN--DNQVFAKYNV------SRLQ--------------------- 135
Query: 318 ENSGPFMYNCGVFIVPKTRAHEWLFSSEEGQWLVVE----SSKAARLIMVLLDTSHASAS 373
P + + L + ++++ S K + V L
Sbjct: 136 ---------------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS------- 173
Query: 374 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVEDLVYE 433
++Q + + L + + M+ +++Q + T
Sbjct: 174 -YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-------KLLYQIDPNWT----------S 215
Query: 434 NVDPEFSRIWPSEDLK--FRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSK 491
D + ++ RRL+ + LL+ +V+ + + +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSK----PYENCLLVLL------NVQNAKAWNAFNLS 265
Query: 492 SKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT------LISSYLE-SVASVGKSV 544
K T R + + L S H T L+ YL+ + + V
Sbjct: 266 CKILLTTRFKQVT-DFLSAATTTHISLDHH--SMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 545 KAV---VIGL-GAGLLPM------FLH-ECMPFVGIEAVELDLTMLNLAE--DYFG---- 587
+ + + + H C +E L +L AE F
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 588 FTQDKSLKVHITDGIKFVREM--KSSSATDEMSVVH 621
F HI + + +D M VV+
Sbjct: 381 FPPS----AHIPTI---LLSLIWFDVIKSDVMVVVN 409
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 61/468 (13%), Positives = 120/468 (25%), Gaps = 189/468 (40%)
Query: 18 LLQTLGDFTSKENWDKF-------FTIRGIG---------------DSFEWYAEWPQLRD 55
LL L + + + W+ F T R D +++
Sbjct: 247 LL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR 115
L+ + P ++ + ++ +I++ +R +
Sbjct: 306 LLLKYLDCRPQDLPREV----LTTNPRR----------LS-------IIAESIRDGL-AT 343
Query: 116 SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 175
D W+ V D+ +I + L+ L EP E +++
Sbjct: 344 WD-NWK-------HVNCDKLTTII--ESSLNVL-EPA-----------EYRKMFDR---- 377
Query: 176 VCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSS 235
L+ +FP S H IP ++ S V+ V +
Sbjct: 378 ----LS-------VFPP-------SAH-IP--------TILLSLIWFDVIKSDVMVVVNK 410
Query: 236 FDHSSLDCNKNQAFGIHEALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNL------ 289
SL K + S+ + L K ++N
Sbjct: 411 LHKYSL-VEK---------------------QPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 290 -----SPGCRFE---LILGGEGDFCFSY-----------------RAVLLDARENSGPFM 324
+ F+ LI + +S+ R V LD R
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR------- 501
Query: 325 YNCGVFIVPKTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASASMDEIQKDLSPL 384
F+ K R + W S ++ L + + L
Sbjct: 502 -----FLEQKIRH-------DSTAWNASGS-----ILNTLQQLKFYKPYICDNDPKYERL 544
Query: 385 VKQLAPGKDDQGAQIPFMM-AGDGI---KHRNVVHQATSSLTGPIIVE 428
V + + F+ + + K+ +++ A + I E
Sbjct: 545 VNAI----------LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 18/117 (15%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDML---RRNVRDR---SDMR 119
P + CG L + G + +D+ + L R +
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYD----PEALDGATRLAAGHALAGQIT 173
Query: 120 WRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
D + E +D++ G + EP+ + + LK GG V
Sbjct: 174 LHRQDAWKLDT--REGYDLLTSNGLN--IYEPDDARVT--ELYRRFWQALKPGGALV 224
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 54/178 (30%)
Query: 545 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 596
K ++IG G G + L E + +E+ E+D ++ +++ + G+ L +
Sbjct: 98 KVLIIGGGDGGV---LREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTL 153
Query: 597 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 656
H+ DG +F+++ + D++I DS D
Sbjct: 154 HVGDGFEFMKQ--------------------------------NQDAFDVII--TDSSDP 179
Query: 657 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV---NLVSRSQATKDMVISRMKMVFNH 711
PA + S+ +K AL E G+ K+M + +F
Sbjct: 180 MG----PAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMR-QFCQSLFPV 232
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 6e-05
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVV 103
+ ++ L++ + T P I+ GCG L L G T +D
Sbjct: 5 YNDDYVSF---LVNTVWKIT--KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSG--- 56
Query: 104 ISDML---RRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGN 159
+L R R D + D T +++ ++ +D+ + L + PE
Sbjct: 57 -ETLLAEARELFRLLPYDSEFLEGDATEIEL--NDKYDIAICHAFLLHMTTPE------- 106
Query: 160 QYLSEVKRLLKSGGKFVCL 178
L ++ +K GGK +C
Sbjct: 107 TMLQKMIHSVKKGGKIICF 125
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 49/152 (32%)
Query: 545 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 596
K +VIG G G + L E IE E+D ++++++ +F G+ +D + +
Sbjct: 123 KVLVIGGGDGGV---LREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-EDPRVNL 178
Query: 597 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 656
I DG+ F++ A+ D +I+D P
Sbjct: 179 VIGDGVAFLKN-------------------------------AAEGSYDAVIVDSSDPIG 207
Query: 657 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688
PA + E F +V AL G+
Sbjct: 208 ------PAKELFEKPFFQSVARALRPGGVVCT 233
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 7e-05
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 19/138 (13%)
Query: 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN---- 111
L + P ++LVP CG S+ L G+H + + S+ +
Sbjct: 10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQP 68
Query: 112 ---------VRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYL 162
V + D ++ D+ + AL +Y+
Sbjct: 69 HITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMR-----ERYV 123
Query: 163 SEVKRLLKSGGKFVCLTL 180
++ L+ + +TL
Sbjct: 124 QHLEALMPQACSGLLITL 141
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 44 FEW----YAEWPQLR-DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNV 97
W Y ++ R P L+ GCG +E L D IT +
Sbjct: 4 MAWSAQQYLKFEDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGI 63
Query: 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVIL 140
D DML + + + D+ + + + D++
Sbjct: 64 DSD----DDMLEKAADRLPNTNFGKADLATWKP--AQKADLLY 100
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 44/122 (36%)
Query: 572 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 626
E+D T++ +++ YF G+ +DK + V I D KF+ + +
Sbjct: 108 CEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTN---------------- 150
Query: 627 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 686
D++I VDS D PA +F + +AL G
Sbjct: 151 ----------------TYDVII--VDSSDPIG----PAETLFNQNFYEKIYNALKPNGYC 188
Query: 687 IV 688
+
Sbjct: 189 VA 190
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 50/152 (32%)
Query: 545 KAVVIGLGAGLLPMFLHECMPFVGIEA---VELDLTMLNLAEDYF-----GFTQDKSLKV 596
+ ++IG G G + L E + +E E+D ++++A+ + GF L +
Sbjct: 111 RVLIIGGGDGGI---LREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-SHPKLDL 166
Query: 597 HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 656
DG +F++ K D++I D P
Sbjct: 167 FCGDGFEFLKNHK--------------------------------NEFDVIITDSSDPVG 194
Query: 657 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688
PA S+ ++DAL E G+
Sbjct: 195 ------PAESLFGQSYYELLRDALKEDGILSS 220
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 42/121 (34%)
Query: 572 VELDLTMLNLAEDYFGFT----QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITS 627
V++D ++ ++ + D + V + DG + + +
Sbjct: 105 VDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSE------------------ 146
Query: 628 NNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687
+ D+++ VDS + PA + F + AL E G+F+
Sbjct: 147 --------------NQYDVIM--VDSTEPVG----PAVNLFTKGFYAGIAKALKEDGIFV 186
Query: 688 V 688
Sbjct: 187 A 187
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 44/122 (36%)
Query: 572 VELDLTMLNLAEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 626
E+D T++ +++ YF G+ +DK + V I D KF+ + +
Sbjct: 146 CEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTN---------------- 188
Query: 627 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 686
D++I VDS D PA +F + +AL G
Sbjct: 189 ----------------TYDVII--VDSSDPIG----PAETLFNQNFYEKIYNALKPNGYC 226
Query: 687 IV 688
+
Sbjct: 227 VA 228
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 18/125 (14%), Positives = 44/125 (35%), Gaps = 16/125 (12%)
Query: 76 GCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDET 135
GC + L + + G ++ ++ + + + + ++ M + +E
Sbjct: 40 GCSSGALGAAIKENGTR-VSGIEAFPEAA-EQAKEKLDH---VVLGDIETMDMP-YEEEQ 93
Query: 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL---AESHVLGLLFPK 192
FD ++ L+ L +P + +VK +K G + S + LL
Sbjct: 94 FDCVIFGDVLEHLFDPW-------AVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGN 146
Query: 193 FRFGW 197
+ +
Sbjct: 147 WTYTE 151
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 76 GCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQVF 131
GCG + + L A +T + S+ ++ R + + D + F
Sbjct: 69 GCGIGKPAVRL--ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-F 125
Query: 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
D +FD + L++L + + + L E+ R+L+ GG
Sbjct: 126 EDASFDAVW---ALESLHH--MPDR--GRALREMARVLRPGGTVA 163
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 15/128 (11%)
Query: 55 DPLISLIGAPTSSPPPQ-ILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRN 111
+ L S + L G G + L G I ++ + V N
Sbjct: 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFL--VRKFGVSIDCLNIAPVQNKRNEEYN 125
Query: 112 VRDRSD--MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 169
+ + + + D ++D I DA + K + E R+L
Sbjct: 126 NQAGLADNITVKYGSFLEIP-CEDNSYDFIW---SQDAFLH--SPDK--LKVFQECARVL 177
Query: 170 KSGGKFVC 177
K G
Sbjct: 178 KPRGVMAI 185
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 49/127 (38%)
Query: 572 VELDLTMLNLAEDYF----------GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621
VE+D ++ +++D + + K+ I DG +F++
Sbjct: 104 VEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------------- 149
Query: 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALS 681
N D++I DS D PA F V DAL+
Sbjct: 150 -------------------NRGFDVII--ADSTDPVG----PAKVLFSEEFYRYVYDALN 184
Query: 682 EQGLFIV 688
G+++
Sbjct: 185 NPGIYVT 191
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-04
Identities = 21/156 (13%), Positives = 43/156 (27%), Gaps = 25/156 (16%)
Query: 64 PTSSPPPQILVPGCGNSRLSEHL-------YDAGFHGITNVDFSKVVISDMLRRNVRDRS 116
+ +IL G G + + Y V+ S I+ + V S
Sbjct: 48 GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAK-YKELVAKTS 106
Query: 117 D-----MRWRVMD-----MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK 166
+ W ++ + +D I L + + L
Sbjct: 107 NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP-------ATLKFFH 159
Query: 167 RLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVH 202
LL + K + + ++ S L+ K+ +
Sbjct: 160 SLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDL 195
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 13/107 (12%)
Query: 76 GCGNSRLSEHLYDA-GFHG-ITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVF 131
G G +L G G + +D + ++ + V ++ + +
Sbjct: 45 GTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV-NYAWEKVNKLGLKNVEVLKSEENKIP-L 102
Query: 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178
D T D I EL ++L E+KR+ K +
Sbjct: 103 PDNTVDFIFMAFTF-----HELSEP--LKFLEELKRVAKPFAYLAII 142
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 772 | |||
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.93 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.9 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.87 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 99.86 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.85 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.83 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.8 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.79 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.79 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.78 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.77 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.77 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.76 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.71 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.71 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.71 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.68 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.68 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.64 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.64 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.63 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.61 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.61 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.61 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.61 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.6 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.59 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.58 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.58 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.58 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.57 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.57 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.57 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.56 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.56 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.56 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.56 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.55 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.55 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.55 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.55 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.54 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.54 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.54 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.54 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.53 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.53 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.53 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.53 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.53 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.52 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.52 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.52 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.52 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.52 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.51 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.51 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.51 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.51 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.51 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.51 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.5 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.5 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.5 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.5 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.5 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.49 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.49 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.48 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.48 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.47 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.47 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.47 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.46 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.46 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.46 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.45 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.45 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.44 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.44 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.43 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.42 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.42 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.42 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.42 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.41 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.41 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.4 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.4 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.4 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.4 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.4 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.39 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.39 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.39 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.38 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.38 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.38 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.38 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.37 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.36 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.36 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.36 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.35 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.35 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.35 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.35 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.35 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.34 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.34 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.34 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.33 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.33 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.32 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.32 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.31 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.3 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.3 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.3 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.3 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.3 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.3 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.29 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.28 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.28 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.28 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.28 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.27 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.27 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.27 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.27 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.27 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.26 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.26 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.25 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.25 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.25 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.24 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.24 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.23 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.23 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.23 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.23 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.22 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.22 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.22 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.22 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.21 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.2 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.2 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.2 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.19 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.19 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.19 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.19 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.19 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.19 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.18 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.18 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.18 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.17 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.16 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.15 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.15 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.15 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.15 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.14 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.14 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.14 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.14 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.14 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.13 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.13 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.13 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.13 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.13 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.12 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.12 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.12 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.12 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.12 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.12 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.12 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.11 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.11 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.11 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.11 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.1 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.1 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.1 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.1 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.1 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.1 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.09 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.09 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.09 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.08 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.07 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.07 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.07 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.07 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.07 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.07 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.06 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.06 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.06 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.06 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.05 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.05 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.04 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.04 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.04 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.04 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.04 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.03 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.02 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.02 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.02 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.02 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.02 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.01 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.01 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.0 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.0 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.0 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.99 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.99 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.99 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.99 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.99 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.99 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.99 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.98 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.98 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.98 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.98 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.98 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.98 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.97 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.97 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.97 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.96 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.96 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.96 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.96 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.96 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.96 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.96 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.96 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.95 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.95 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.94 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.92 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.92 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.92 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.9 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.9 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.9 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.89 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.88 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.87 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.86 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.86 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.85 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.85 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.85 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.85 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.84 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.84 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.84 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.84 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.83 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.83 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.83 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.83 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.82 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.81 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.8 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.79 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.79 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.78 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.76 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.76 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.76 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.74 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.74 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.73 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.73 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.73 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.73 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.72 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.72 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.72 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.71 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.71 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.71 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.71 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.7 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.7 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.69 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.68 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.68 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.67 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.67 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.67 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.66 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.66 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.66 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.65 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.65 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.64 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.64 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.63 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.63 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.63 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.63 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.62 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.62 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.62 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.6 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.6 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.6 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.6 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.59 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.59 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.58 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.58 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.57 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.57 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.56 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.56 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.56 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.56 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.55 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.55 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.54 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.54 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.54 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.54 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.54 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.54 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.53 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.53 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.53 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.53 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.53 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.53 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.53 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.52 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.52 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.52 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.52 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.52 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.52 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.52 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.51 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.51 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.51 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.51 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.51 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.5 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.5 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.5 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.49 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.49 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.48 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.48 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.48 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.48 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.48 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.47 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.46 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.46 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.46 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.46 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.45 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.44 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.44 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.44 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.44 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.44 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.44 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.44 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.43 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.43 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.42 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.42 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.42 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.41 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.41 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.41 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.4 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.4 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.4 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.4 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.39 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.39 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.38 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.38 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.38 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.37 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.37 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.37 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.37 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.37 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.37 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.36 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.36 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.36 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.36 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.36 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.35 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.34 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.34 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.34 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.33 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.33 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.33 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.33 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.32 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.32 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.32 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.32 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.32 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.32 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.32 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.32 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.31 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.31 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.31 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.31 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.3 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.3 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.3 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.3 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.29 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.29 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.29 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.29 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.29 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.28 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.28 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.28 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.27 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.26 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.26 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.25 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.25 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.24 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.24 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.24 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.24 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.24 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.24 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.22 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.22 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.22 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.22 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.22 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.21 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.21 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.21 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.2 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.2 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.2 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.19 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.18 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.18 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.17 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.16 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.15 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.15 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.15 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.14 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.14 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.14 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.13 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 98.12 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.12 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.12 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.12 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.11 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.1 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.09 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.09 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.08 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.08 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.06 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.06 |
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=238.13 Aligned_cols=182 Identities=20% Similarity=0.281 Sum_probs=153.0
Q ss_pred ecCCccchHHHHHHHHHHhhh--hhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC
Q 004133 510 VYHGYLASSYHMGIISGFTLI--SSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 587 (772)
Q Consensus 510 ~d~~~L~~~Y~~~m~~~l~l~--~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 587 (772)
-|+.++.+.||+.|+..+.++ .+ ..+++.+||+||+|+|.++++|.+.+|..+|++|||||.|+++|+++|+
T Consensus 61 ~dP~~le~~Y~e~m~~~~~~l~~~~------p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~ 134 (317)
T 3gjy_A 61 GQPQALEFEYMRWIATGARAFIDAH------QDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFD 134 (317)
T ss_dssp TCTTCCCSHHHHHHHHHHHHHHHHH------SCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSC
T ss_pred CCCcchhhHHHHHHHHHHHhhcccC------CCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcc
Confidence 357889999999999876652 12 1123449999999999999999998899999999999999999999999
Q ss_pred CCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC
Q 004133 588 FTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF 667 (772)
Q Consensus 588 ~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f 667 (772)
+..++|++++++||++|++... ..+||+||+|++.... ++..+
T Consensus 135 ~~~~~rv~v~~~Da~~~l~~~~-------------------------------~~~fDvIi~D~~~~~~------~~~~L 177 (317)
T 3gjy_A 135 IPRAPRVKIRVDDARMVAESFT-------------------------------PASRDVIIRDVFAGAI------TPQNF 177 (317)
T ss_dssp CCCTTTEEEEESCHHHHHHTCC-------------------------------TTCEEEEEECCSTTSC------CCGGG
T ss_pred ccCCCceEEEECcHHHHHhhcc-------------------------------CCCCCEEEECCCCccc------cchhh
Confidence 8778999999999999997653 3679999999876631 46889
Q ss_pred CcHHHHHHHHHccCCCcEEEEEecCCC-hhHHHHHHHHHHHhccceEEEeec------CCceEEEEEecCCCcC
Q 004133 668 VEGSFLLTVKDALSEQGLFIVNLVSRS-QATKDMVISRMKMVFNHLFCLQLE------EDVNLVLFGLSSESCI 734 (772)
Q Consensus 668 ~~~~fl~~~~~~L~~~Gilv~Nl~~~~-~~~~~~v~~~l~~vF~~v~~~~~~------~~~N~vl~a~~~~~~~ 734 (772)
++.+||+.++++|+|||+|++|+.+.. ......++.+|+++|+++..+... +..|.|++|++.+...
T Consensus 178 ~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As~~plp~ 251 (317)
T 3gjy_A 178 TTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGSDTEFFS 251 (317)
T ss_dssp SBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEESSCCCC
T ss_pred hHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEECCCCCc
Confidence 999999999999999999999997543 355678899999999999888642 5689999999887544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=220.48 Aligned_cols=170 Identities=20% Similarity=0.345 Sum_probs=138.9
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQ 590 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~~ 590 (772)
.+.||..|+ +++|..+ ++|++|||||+|+|++++.+.++.+..+|++|||||.|+++|++|| |.-+
T Consensus 66 e~~YhE~l~-h~~l~~~--------p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~ 136 (294)
T 3o4f_A 66 EFIYHEMMT-HVPLLAH--------GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYD 136 (294)
T ss_dssp HHHHHHHHH-HHHHHHS--------SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG
T ss_pred HHHHHHHHH-HHHHhhC--------CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccC
Confidence 367887555 4555554 7899999999999999999999988889999999999999999998 3347
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
|+|++++++||++||++.. .+||+||+|+.++. + |+..|++.
T Consensus 137 dpRv~v~~~Dg~~~l~~~~--------------------------------~~yDvIi~D~~dp~--~----~~~~L~t~ 178 (294)
T 3o4f_A 137 DPRFKLVIDDGVNFVNQTS--------------------------------QTFDVIISDCTDPI--G----PGESLFTS 178 (294)
T ss_dssp CTTEEEEESCTTTTTSCSS--------------------------------CCEEEEEESCCCCC--C----TTCCSSCC
T ss_pred CCcEEEEechHHHHHhhcc--------------------------------ccCCEEEEeCCCcC--C----CchhhcCH
Confidence 8999999999999987643 67999999887653 1 57889999
Q ss_pred HHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ec---CCceEEEEEecCCC
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE---EDVNLVLFGLSSES 732 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~---~~~N~vl~a~~~~~ 732 (772)
+|++.++++|+|+|+++++.-+. +......++++++++|+.+..+. ++ .+.....+|++...
T Consensus 179 eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as~~~~ 247 (294)
T 3o4f_A 179 AFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDA 247 (294)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEESCTT
T ss_pred HHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcceeheeEECCCc
Confidence 99999999999999999987554 34455678999999999876654 33 34556778887653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=195.57 Aligned_cols=190 Identities=32% Similarity=0.609 Sum_probs=157.4
Q ss_pred CCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHH
Q 004133 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~ 103 (772)
.|...+||+++|........++|+..+..+...+..++ .++.+|||+|||+|.++..+++.|..+|+++|+|+.+
T Consensus 3 ~~~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~ 77 (215)
T 2pxx_A 3 GYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL-----RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVV 77 (215)
T ss_dssp GGGCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGC-----CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHH
T ss_pred cccchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhc-----CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHH
Confidence 57789999999987743456889999888888887776 3578999999999999999999887679999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCc--------cchHHHHHHHHHHHhccccCeEE
Q 004133 104 ISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPE--------LGHKLGNQYLSEVKRLLKSGGKF 175 (772)
Q Consensus 104 I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~--------~~~~~~~~~l~ei~rvLkpGG~~ 175 (772)
++.++++... .+++++.++|+.+++ +++++||+|++.++++++.... ........+++++.++|||||++
T Consensus 78 ~~~a~~~~~~-~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 155 (215)
T 2pxx_A 78 VAAMQACYAH-VPQLRWETMDVRKLD-FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRF 155 (215)
T ss_dssp HHHHHHHTTT-CTTCEEEECCTTSCC-SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHhccc-CCCcEEEEcchhcCC-CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEE
Confidence 9999887743 468999999999998 8889999999999998876211 01123689999999999999999
Q ss_pred EEEEcCchhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCC
Q 004133 176 VCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 176 ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
++.++..+++...++......|.+....+. ...++|+|++++.+.
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 200 (215)
T 2pxx_A 156 ISMTSAAPHFRTRHYAQAYYGWSLRHATYG------SGFHFHLYLMHKGGK 200 (215)
T ss_dssp EEEESCCHHHHHHHHCCGGGCEEEEEEEES------GGGCEEEEEEEETCC
T ss_pred EEEeCCCcHHHHHHHhccccCcEEEEEEec------CcceEEEEEEEeCCC
Confidence 999999998888777766668988877762 247788999988654
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-21 Score=206.28 Aligned_cols=174 Identities=12% Similarity=0.102 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC--------
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------- 588 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-------- 588 (772)
+.||++|+... +.. .++++|||||+|+|++++.+.++.+ .+|++|||||+|+++|++||..
T Consensus 190 ~~Y~e~l~h~~-l~~---------~~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~ 258 (381)
T 3c6k_A 190 LAYTRAIMGSG-KED---------YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDN 258 (381)
T ss_dssp HHHHHHHTTTT-CCC---------CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSS
T ss_pred HHHHHHHHHHH-hhc---------CCCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhcc
Confidence 45888877543 332 3578999999999999999998855 6999999999999999999842
Q ss_pred CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC
Q 004133 589 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV 668 (772)
Q Consensus 589 ~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~ 668 (772)
+.++|++++++||++||++... .+.+||+||+|+++...+.+...|+..++
T Consensus 259 pr~~rv~vii~Da~~fl~~~~~-----------------------------~~~~yDvIIvDl~D~~~s~~p~g~a~~Lf 309 (381)
T 3c6k_A 259 LKGDCYQVLIEDCIPVLKRYAK-----------------------------EGREFDYVINDLTAVPISTSPEEDSTWEF 309 (381)
T ss_dssp SEETTEEEEESCHHHHHHHHHH-----------------------------HTCCEEEEEEECCSSCCCCC----CHHHH
T ss_pred ccccceeeehHHHHHHHHhhhh-----------------------------ccCceeEEEECCCCCcccCcccCcchHHH
Confidence 2357899999999999987541 13679999999987654444455677899
Q ss_pred cHHHHHHHHHccCCCcEEEEEecCC-ChhHHHHHHHHHHHhccceEEE----eecC--CceEEEEEecC
Q 004133 669 EGSFLLTVKDALSEQGLFIVNLVSR-SQATKDMVISRMKMVFNHLFCL----QLEE--DVNLVLFGLSS 730 (772)
Q Consensus 669 ~~~fl~~~~~~L~~~Gilv~Nl~~~-~~~~~~~v~~~l~~vF~~v~~~----~~~~--~~N~vl~a~~~ 730 (772)
+.+||+.++++|+|+|+++.+.-+. .......+.++++++|+.+... .++. +.....+|++.
T Consensus 310 t~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~ 378 (381)
T 3c6k_A 310 LRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK 378 (381)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence 9999999999999999999875333 2344567789999999976332 2232 34556666654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=195.90 Aligned_cols=168 Identities=17% Similarity=0.288 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQ 590 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~~ 590 (772)
.+.||+.|. .+++..+ +.+.+||+||+|+|.++..+..+.+..+|++||+||.|+++|+++| ++ .
T Consensus 58 e~~y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~ 127 (275)
T 1iy9_A 58 EFVYHEMVA-HVPLFTH--------PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-D 127 (275)
T ss_dssp HHHHHHHHH-HHHHHHS--------SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-T
T ss_pred hhHHHHHHH-HHHHhhC--------CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-C
Confidence 367888554 4444433 5678999999999999999998877789999999999999999998 44 5
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
++|++++++||++|+.... .+||+|++|...+. .|+..+++.
T Consensus 128 ~~rv~v~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~~------~~~~~l~~~ 169 (275)
T 1iy9_A 128 DPRVDVQVDDGFMHIAKSE--------------------------------NQYDVIMVDSTEPV------GPAVNLFTK 169 (275)
T ss_dssp STTEEEEESCSHHHHHTCC--------------------------------SCEEEEEESCSSCC------SCCCCCSTT
T ss_pred CCceEEEECcHHHHHhhCC--------------------------------CCeeEEEECCCCCC------CcchhhhHH
Confidence 7899999999999987632 57999999876532 267888999
Q ss_pred HHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ec---CCceEEEEEecCC
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE---EDVNLVLFGLSSE 731 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~---~~~N~vl~a~~~~ 731 (772)
+|++.++++|+|||++++|..+. +......++++++++|+++..+. ++ .+.+.+++|++..
T Consensus 170 ~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ask~~ 237 (275)
T 1iy9_A 170 GFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKY 237 (275)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSC
T ss_pred HHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEeeCCC
Confidence 99999999999999999997653 45667888999999999876654 33 3456678888753
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-19 Score=193.17 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=140.9
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-----CC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----TQ 590 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-----~~ 590 (772)
.+.||+.|.. +++..+ +.+.+||+||+|+|.++..+.++.|..+|++||+||.++++|+++|.. ..
T Consensus 60 e~~Y~e~l~~-~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~ 130 (314)
T 1uir_A 60 EYIYHETLVH-PAMLTH--------PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD 130 (314)
T ss_dssp HHHHHHHHHH-HHHHHS--------SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG
T ss_pred hhHHHHHHHH-HHHhcC--------CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccccc
Confidence 3568887653 344433 567899999999999999999987778999999999999999999842 13
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
+++++++++|+.+++.... .+||+|++|..... ++.+|+..++..
T Consensus 131 ~~~v~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~~---~~~~~~~~l~~~ 175 (314)
T 1uir_A 131 DPRAVLVIDDARAYLERTE--------------------------------ERYDVVIIDLTDPV---GEDNPARLLYTV 175 (314)
T ss_dssp CTTEEEEESCHHHHHHHCC--------------------------------CCEEEEEEECCCCB---STTCGGGGGSSH
T ss_pred CCceEEEEchHHHHHHhcC--------------------------------CCccEEEECCCCcc---cccCcchhccHH
Confidence 6899999999999987632 57999999875532 234577888899
Q ss_pred HHHHHHHHccCCCcEEEEEecCC---ChhHHHHHHHHHHHhccceEEEe--e--cCCceEEEEEecCCC--cCCCCcHHH
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSR---SQATKDMVISRMKMVFNHLFCLQ--L--EEDVNLVLFGLSSES--CIKDNSFPE 741 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~---~~~~~~~v~~~l~~vF~~v~~~~--~--~~~~N~vl~a~~~~~--~~~~~~l~~ 741 (772)
+|++.++++|+|||+|++|..+. +......+.+.++++|+++..+. + ..+.+.+++|++... ......+.+
T Consensus 176 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~~~~as~~~~p~~~~~~~~~~ 255 (314)
T 1uir_A 176 EFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEA 255 (314)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESSSCTTCCCTTHHHH
T ss_pred HHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEEEEEEECCCCcccCCHHHHHH
Confidence 99999999999999999997553 34567788999999999865543 2 344677889988732 333334544
Q ss_pred HHH
Q 004133 742 AAV 744 (772)
Q Consensus 742 ~a~ 744 (772)
+..
T Consensus 256 ~~~ 258 (314)
T 1uir_A 256 RIR 258 (314)
T ss_dssp HHH
T ss_pred Hhh
Confidence 433
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=182.65 Aligned_cols=166 Identities=23% Similarity=0.360 Sum_probs=130.3
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc----CCC--
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFT-- 589 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F----g~~-- 589 (772)
.+.||+.|. .+++..+ +.+.+||+||+|+|.++..+..+ |..+|++||+||.++++|+++| ++.
T Consensus 58 ~~~y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~ 127 (281)
T 1mjf_A 58 ERSYHEPLV-HPAMLAH--------PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEA 127 (281)
T ss_dssp THHHHHHHH-HHHHHHS--------SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHH
T ss_pred chHHHHHHH-HHHHhhC--------CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccc
Confidence 366888765 3333332 45689999999999999999988 8789999999999999999999 321
Q ss_pred ----CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc
Q 004133 590 ----QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA 665 (772)
Q Consensus 590 ----~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~ 665 (772)
.+++++++++|+.+++.. . .+||+|++|..... +|+.
T Consensus 128 ~~~~~~~~v~~~~~D~~~~l~~-~--------------------------------~~fD~Ii~d~~~~~------~~~~ 168 (281)
T 1mjf_A 128 MLNGKHEKAKLTIGDGFEFIKN-N--------------------------------RGFDVIIADSTDPV------GPAK 168 (281)
T ss_dssp HHTTCCSSEEEEESCHHHHHHH-C--------------------------------CCEEEEEEECCCCC----------
T ss_pred cccCCCCcEEEEECchHHHhcc-c--------------------------------CCeeEEEECCCCCC------Ccch
Confidence 468999999999999876 4 56999999876431 2567
Q ss_pred CCCcHHHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--c--CCceEEEEEecC
Q 004133 666 DFVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSS 730 (772)
Q Consensus 666 ~f~~~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~vl~a~~~ 730 (772)
.+++.+|++.++++|+|||++++|..+. .......+.+.++++|+++..+.. + .+.+.+++|++.
T Consensus 169 ~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~~~~as~~ 239 (281)
T 1mjf_A 169 VLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKG 239 (281)
T ss_dssp -TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred hhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence 7889999999999999999999997543 556677889999999998766542 3 356788999886
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-18 Score=179.16 Aligned_cols=168 Identities=22% Similarity=0.327 Sum_probs=133.1
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC----CC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~----~~ 591 (772)
.+.||. |++.+++..+ +.+.+||+||+|+|.++..+.++.|..+|++||+||.|+++|+++|... ++
T Consensus 61 e~~Y~e-~l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~ 131 (283)
T 2i7c_A 61 EFAYHE-MMTHVPMTVS--------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 131 (283)
T ss_dssp HHHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGS
T ss_pred hhhHHH-HHHHHHHhcC--------CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCC
Confidence 356876 5666665543 5678999999999999999998877789999999999999999998542 36
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
++++++++|+.+++.... .+||+||+|.... . .|+..+++.+
T Consensus 132 ~~v~~~~~D~~~~l~~~~--------------------------------~~fD~Ii~d~~~~--~----~~~~~l~~~~ 173 (283)
T 2i7c_A 132 KRVNVFIEDASKFLENVT--------------------------------NTYDVIIVDSSDP--I----GPAETLFNQN 173 (283)
T ss_dssp TTEEEEESCHHHHHHHCC--------------------------------SCEEEEEEECCCT--T----TGGGGGSSHH
T ss_pred CcEEEEECChHHHHHhCC--------------------------------CCceEEEEcCCCC--C----CcchhhhHHH
Confidence 899999999999987642 5799999987543 2 2567788999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ecC--Cce-EEEEEecC
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE--DVN-LVLFGLSS 730 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~--~~N-~vl~a~~~ 730 (772)
|++.++++|+|||++++|..+. .......++++++++|+++..+. ++. +.+ ..++|++.
T Consensus 174 ~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~s~~ 239 (283)
T 2i7c_A 174 FYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKT 239 (283)
T ss_dssp HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEEEeCC
Confidence 9999999999999999997643 45566788999999999765443 443 244 47777765
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=181.58 Aligned_cols=144 Identities=18% Similarity=0.325 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 004133 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (772)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~ 105 (772)
.+.+||+++|.... ..+.+....+.+...+...+.. .++.+|||+|||+|.++..|++.|+ +|+|||+|+.||+
T Consensus 31 ~~~~~Wd~~y~~~~--~~~~~~~~~~~l~~~~~~~~~~---~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~ 104 (252)
T 2gb4_A 31 LTLEDWKEKWVTRH--ISFHQEQGHQLLKKHLDTFLKG---QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIR 104 (252)
T ss_dssp CCHHHHHHHHHHTC--CTTCCTTCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHH
T ss_pred CCHHHHHHHHhcCC--CCcccCCCCHHHHHHHHHhccC---CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHH
Confidence 36899999998763 2222222233444544444321 3678999999999999999999998 7999999999999
Q ss_pred HHHHHhcc------------------CCCCcEEEEeeccCcccccC-CCccEEEecccccccccCccchHHHHHHHHHHH
Q 004133 106 DMLRRNVR------------------DRSDMRWRVMDMTSMQVFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVK 166 (772)
Q Consensus 106 ~a~~~~~~------------------~~~~v~f~~~D~~~l~~~~~-~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~ 166 (772)
.|++++.. ...+++|.++|+.+++ +.+ ++||+|++.++++++..++ ...+++++.
T Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~-~~~~~~FD~V~~~~~l~~l~~~~-----~~~~l~~~~ 178 (252)
T 2gb4_A 105 EFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP-RANIGKFDRIWDRGALVAINPGD-----HDRYADIIL 178 (252)
T ss_dssp HHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG-GGCCCCEEEEEESSSTTTSCGGG-----HHHHHHHHH
T ss_pred HHHHhcccccccccccccccccccccCCCceEEEECccccCC-cccCCCEEEEEEhhhhhhCCHHH-----HHHHHHHHH
Confidence 99877631 2468999999999998 664 8999999999999986543 678999999
Q ss_pred hccccCeEEEEEEcC
Q 004133 167 RLLKSGGKFVCLTLA 181 (772)
Q Consensus 167 rvLkpGG~~ii~~~~ 181 (772)
++|||||+++++++.
T Consensus 179 ~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 179 SLLRKEFQYLVAVLS 193 (252)
T ss_dssp HTEEEEEEEEEEEEE
T ss_pred HHcCCCeEEEEEEEe
Confidence 999999999876643
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=179.99 Aligned_cols=167 Identities=17% Similarity=0.286 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC----CCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~----~~~ 592 (772)
+.||. |++.+++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|... .++
T Consensus 92 ~~Y~e-~l~~l~l~~~--------~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~ 162 (314)
T 2b2c_A 92 FSYQE-MLAHLPMFAH--------PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162 (314)
T ss_dssp SHHHH-HHHHHHHHHS--------SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCT
T ss_pred hHHHH-HHHHHHHhhC--------CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCC
Confidence 56876 5666665443 5678999999999999999998878889999999999999999999432 368
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++|+.+++... ..+||+||+|.... . .|+..+++.+|
T Consensus 163 rv~~~~~D~~~~l~~~--------------------------------~~~fD~Ii~d~~~~--~----~~~~~l~t~~~ 204 (314)
T 2b2c_A 163 KLDLFCGDGFEFLKNH--------------------------------KNEFDVIITDSSDP--V----GPAESLFGQSY 204 (314)
T ss_dssp TEEEECSCHHHHHHHC--------------------------------TTCEEEEEECCC-------------------H
T ss_pred CEEEEEChHHHHHHhc--------------------------------CCCceEEEEcCCCC--C----CcchhhhHHHH
Confidence 9999999999998763 25799999987533 1 25667888999
Q ss_pred HHHHHHccCCCcEEEEEecC--CChhHHHHHHHHHHHhccceEEEe--ecC--Cce-EEEEEecC
Q 004133 673 LLTVKDALSEQGLFIVNLVS--RSQATKDMVISRMKMVFNHLFCLQ--LEE--DVN-LVLFGLSS 730 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~--~~~~~~~~v~~~l~~vF~~v~~~~--~~~--~~N-~vl~a~~~ 730 (772)
++.++++|+|||+++++..+ .+......+.+.++++|+++..+. ++. +++ .+++|++.
T Consensus 205 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~ 269 (314)
T 2b2c_A 205 YELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKN 269 (314)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEEEeCC
Confidence 99999999999999998733 244566778999999999765443 333 234 57778766
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=178.35 Aligned_cols=169 Identities=19% Similarity=0.242 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC----CCCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg----~~~~~ 592 (772)
+.||..|. .+++..+ +.+.+||+||+|+|.++..+..+.|..+|++||+||.++++|+++|. -..++
T Consensus 74 ~~y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~ 144 (296)
T 1inl_A 74 FMYHEMLA-HVPMFLH--------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP 144 (296)
T ss_dssp HHHHHHHH-HHHHHHS--------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHHHHh-HHHHhcC--------CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCC
Confidence 56887544 4444432 45689999999999999999988777899999999999999999982 12368
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
+++++++|+.+++... ..+||+|++|+..+. . .|+..+++.+|
T Consensus 145 ~v~~~~~D~~~~l~~~--------------------------------~~~fD~Ii~d~~~~~-~----~~~~~l~~~~~ 187 (296)
T 1inl_A 145 RAEIVIANGAEYVRKF--------------------------------KNEFDVIIIDSTDPT-A----GQGGHLFTEEF 187 (296)
T ss_dssp TEEEEESCHHHHGGGC--------------------------------SSCEEEEEEEC---------------CCSHHH
T ss_pred ceEEEECcHHHHHhhC--------------------------------CCCceEEEEcCCCcc-c----CchhhhhHHHH
Confidence 9999999999997653 257999999875431 1 25677889999
Q ss_pred HHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ec---CCceEEEEEecCC
Q 004133 673 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LE---EDVNLVLFGLSSE 731 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~---~~~N~vl~a~~~~ 731 (772)
++.++++|+|||+|+++..+. +......++++++++|+++..+. ++ .+.+.+++|++..
T Consensus 188 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~as~~~ 253 (296)
T 1inl_A 188 YQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGI 253 (296)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSC
T ss_pred HHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEecCCC
Confidence 999999999999999997653 45667888999999999876654 22 3456677888753
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=166.83 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC----CCCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg----~~~~~ 592 (772)
..|+..|. .+++..+ +.+.+||+||+|+|.++..+.++.+..+|++||+||.++++|++++. -..++
T Consensus 79 ~~y~e~l~-~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~ 149 (304)
T 3bwc_A 79 FVYHEVLG-HTSLCSH--------PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADP 149 (304)
T ss_dssp HHHHHHHH-HHHHTTS--------SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHHHHh-hhhhhcC--------CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCC
Confidence 56776544 4444332 46689999999999999999988777899999999999999999982 12468
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
+++++++|+.+++.... ..+||+|++|..... .|+..+++.+|
T Consensus 150 ~v~~~~~D~~~~~~~~~-------------------------------~~~fDvIi~d~~~~~------~~~~~l~~~~~ 192 (304)
T 3bwc_A 150 RATVRVGDGLAFVRQTP-------------------------------DNTYDVVIIDTTDPA------GPASKLFGEAF 192 (304)
T ss_dssp TEEEEESCHHHHHHSSC-------------------------------TTCEEEEEEECC---------------CCHHH
T ss_pred cEEEEECcHHHHHHhcc-------------------------------CCceeEEEECCCCcc------ccchhhhHHHH
Confidence 99999999999976522 257999999875432 25778889999
Q ss_pred HHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHh-ccceEEEee--c---CCceEEEEEecC
Q 004133 673 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCLQL--E---EDVNLVLFGLSS 730 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~v-F~~v~~~~~--~---~~~N~vl~a~~~ 730 (772)
|+.++++|+|||+|+++..+. .......+.+.++++ |+.+..+.. + .+....++|++.
T Consensus 193 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~~ 258 (304)
T 3bwc_A 193 YKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSKK 258 (304)
T ss_dssp HHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEESS
T ss_pred HHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEEEeCC
Confidence 999999999999999997653 345567789999999 997766543 3 344557778876
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=168.47 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc-------------CCCCcEEEEeeccCcccccC
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------------DRSDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~-------------~~~~v~f~~~D~~~l~~~~~ 133 (772)
.++.+|||+|||+|..+..|++.|+ +|+|+|+|+.||+.|++++.. ...+++|+++|+.+++ +.+
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~-~~~ 98 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT-ARD 98 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST-HHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC-ccc
Confidence 4678999999999999999999987 799999999999999887642 2458999999999998 765
Q ss_pred -CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 134 -ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 134 -~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++||+|++.++++++..++ ..+++++++|+|||||+++++++
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~-----~~~~l~~~~r~LkpgG~~~l~~~ 141 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADM-----RERYVQHLEALMPQACSGLLITL 141 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHH-----HHHHHHHHHHHSCSEEEEEEEEE
T ss_pred CCCEEEEEECcchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEE
Confidence 8999999999999885432 67899999999999999555543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-16 Score=169.03 Aligned_cols=167 Identities=18% Similarity=0.267 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~~ 592 (772)
..||. |++.+++..+ +.+.+||+||+|+|.++..+.++.|..+|++||+||.++++|+++|.. ..++
T Consensus 79 ~~y~e-~l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~ 149 (304)
T 2o07_A 79 FSYQE-MIANLPLCSH--------PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS 149 (304)
T ss_dssp HHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred hHHHH-HHHHHHHhhC--------CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCC
Confidence 55775 5555555432 567899999999999999999887778999999999999999999842 1368
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
+++++++|+.+++.... .+||+||+|..... .|+..+.+.+|
T Consensus 150 rv~v~~~Da~~~l~~~~--------------------------------~~fD~Ii~d~~~~~------~~~~~l~~~~~ 191 (304)
T 2o07_A 150 KLTLHVGDGFEFMKQNQ--------------------------------DAFDVIITDSSDPM------GPAESLFKESY 191 (304)
T ss_dssp TEEEEESCHHHHHHTCS--------------------------------SCEEEEEEECC-----------------CHH
T ss_pred cEEEEECcHHHHHhhCC--------------------------------CCceEEEECCCCCC------CcchhhhHHHH
Confidence 99999999999987632 57999999875431 24566788999
Q ss_pred HHHHHHccCCCcEEEEEecC--CChhHHHHHHHHHHHhccceEEE--eecC---CceEEEEEecC
Q 004133 673 LLTVKDALSEQGLFIVNLVS--RSQATKDMVISRMKMVFNHLFCL--QLEE---DVNLVLFGLSS 730 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~--~~~~~~~~v~~~l~~vF~~v~~~--~~~~---~~N~vl~a~~~ 730 (772)
|+.++++|+|||+|+++..+ ........+.+.++++|+++... .++. +...+++|++.
T Consensus 192 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~as~~ 256 (304)
T 2o07_A 192 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKN 256 (304)
T ss_dssp HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred HHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEEEeCC
Confidence 99999999999999998744 34556677889999999976443 2333 22346677765
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-16 Score=166.39 Aligned_cols=168 Identities=22% Similarity=0.332 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~~ 592 (772)
+.||.. +..+++..+ +.+.+||+||+|+|.++..+.++.|..+|++||+||.++++|++++.. ..++
T Consensus 100 ~~y~e~-l~~~~l~~~--------~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~ 170 (321)
T 2pt6_A 100 FAYHEM-MTHVPMTVS--------KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDK 170 (321)
T ss_dssp HHHHHH-HHHHHHHHS--------SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGST
T ss_pred hHHHHH-HHHHHHhcC--------CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCC
Confidence 568764 444554432 456899999999999999999887788999999999999999999853 1368
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
+++++++|+.+++.... .+||+|++|...+ . .|+..+++.+|
T Consensus 171 ~v~~~~~D~~~~l~~~~--------------------------------~~fDvIi~d~~~p--~----~~~~~l~~~~~ 212 (321)
T 2pt6_A 171 RVNVFIEDASKFLENVT--------------------------------NTYDVIIVDSSDP--I----GPAETLFNQNF 212 (321)
T ss_dssp TEEEEESCHHHHHHHCC--------------------------------SCEEEEEEECCCS--S----SGGGGGSSHHH
T ss_pred cEEEEEccHHHHHhhcC--------------------------------CCceEEEECCcCC--C----CcchhhhHHHH
Confidence 99999999999987632 5799999987432 1 25667888999
Q ss_pred HHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ecC--CceE-EEEEecCC
Q 004133 673 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE--DVNL-VLFGLSSE 731 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~--~~N~-vl~a~~~~ 731 (772)
++.+++.|+|||+++++..+. +......++++++++|+++..+. ++. ++++ .++|++..
T Consensus 213 l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~as~~~ 278 (321)
T 2pt6_A 213 YEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTD 278 (321)
T ss_dssp HHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred HHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEEeeCCC
Confidence 999999999999999997654 45567788999999999865554 332 2344 56777653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=164.31 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~~ 592 (772)
+.||..|. .+++..+ +.+.+||+||+|+|.++..+..+ + .+|++||+||.|+++|+++|.. ..++
T Consensus 56 ~~y~e~l~-~~~~~~~--------~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~ 124 (262)
T 2cmg_A 56 HIESELLA-HMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNK 124 (262)
T ss_dssp HHHHHHHH-HHHHTTS--------SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCT
T ss_pred HHHHHHHH-HHhhhcC--------CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCC
Confidence 56876544 4444332 46789999999999999988888 7 8999999999999999999843 1468
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++||.+|+ .+||+||+|+. | | ..|
T Consensus 125 rv~~~~~D~~~~~------------------------------------~~fD~Ii~d~~--d-------p------~~~ 153 (262)
T 2cmg_A 125 NFTHAKQLLDLDI------------------------------------KKYDLIFCLQE--P-------D------IHR 153 (262)
T ss_dssp TEEEESSGGGSCC------------------------------------CCEEEEEESSC--C-------C------HHH
T ss_pred eEEEEechHHHHH------------------------------------hhCCEEEECCC--C-------h------HHH
Confidence 9999999998874 24999999842 2 1 239
Q ss_pred HHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--c-CCceEEEEEecCCCc
Q 004133 673 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E-EDVNLVLFGLSSESC 733 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~-~~~N~vl~a~~~~~~ 733 (772)
++.+++.|+|||+++++..+. +......+.++++++|+++..+.. + .+.+.+++|++...+
T Consensus 154 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~vP~~g~~~~~~as~~~~p 219 (262)
T 2cmg_A 154 IDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKTHP 219 (262)
T ss_dssp HHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECCTTCTTCCEEEEEEESSCCT
T ss_pred HHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEEccCCCcccEEEEeeCCCCc
Confidence 999999999999999986543 334567788999999998766542 2 455667788876433
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=149.48 Aligned_cols=133 Identities=20% Similarity=0.339 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHH
Q 004133 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~ 103 (772)
.|...+||+..|.... .. ..+...+.. .++.+|||+|||+|.++..+++.|. +|+++|+|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~---~~----------~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~ 66 (199)
T 2xvm_A 4 VIRDENYFTDKYELTR---TH----------SEVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMS 66 (199)
T ss_dssp CCCCTTHHHHHHTCCC---CC----------HHHHHHTTT---SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHH
T ss_pred EEechHHHhhhhcccc---cc----------HHHHHHhhc---cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHH
Confidence 3567789999886541 11 124455544 4678999999999999999999876 79999999999
Q ss_pred HHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 104 ISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 104 I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++.++++..... .++++.++|+.+++ + +++||+|++..+++++...+ ...+++++.++|||||++++++.
T Consensus 67 ~~~a~~~~~~~~~~~~~~~~~d~~~~~-~-~~~~D~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 67 IANVERIKSIENLDNLHTRVVDLNNLT-F-DRQYDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp HHHHHHHHHHHTCTTEEEEECCGGGCC-C-CCCEEEEEEESCGGGSCGGG-----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCcEEEEcchhhCC-C-CCCceEEEEcchhhhCCHHH-----HHHHHHHHHHhcCCCeEEEEEEe
Confidence 999988765433 37999999999998 6 88999999999999986433 68999999999999999887654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=162.04 Aligned_cols=168 Identities=21% Similarity=0.366 Sum_probs=127.8
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQ 590 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~~ 590 (772)
.+.||. |+..+++..+ +.+.+||+||+|+|.++..|..+.|..+|++||+||.++++|+++| |+ .
T Consensus 103 e~~y~e-~L~~l~l~~~--------~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~ 172 (334)
T 1xj5_A 103 ECAYQE-MITHLPLCSI--------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-E 172 (334)
T ss_dssp HHHHHH-HHHHHHHTTS--------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-G
T ss_pred chHHHH-HHHHHHHhhC--------CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-C
Confidence 466877 4555555432 5678999999999999999999877789999999999999999998 33 4
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
+++++++++|+.+++.... ..+||+|++|...+ . .++..++..
T Consensus 173 ~~rv~~~~~D~~~~l~~~~-------------------------------~~~fDlIi~d~~~p--~----~~~~~l~~~ 215 (334)
T 1xj5_A 173 DPRVNLVIGDGVAFLKNAA-------------------------------EGSYDAVIVDSSDP--I----GPAKELFEK 215 (334)
T ss_dssp STTEEEEESCHHHHHHTSC-------------------------------TTCEEEEEECCCCT--T----SGGGGGGSH
T ss_pred CCcEEEEECCHHHHHHhcc-------------------------------CCCccEEEECCCCc--c----CcchhhhHH
Confidence 6799999999999987643 25799999987533 1 145567789
Q ss_pred HHHHHHHHccCCCcEEEEEecC--CChhHHHHHHHHHHHhccceEE---EeecCC---ceEEEEEecC
Q 004133 671 SFLLTVKDALSEQGLFIVNLVS--RSQATKDMVISRMKMVFNHLFC---LQLEED---VNLVLFGLSS 730 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~--~~~~~~~~v~~~l~~vF~~v~~---~~~~~~---~N~vl~a~~~ 730 (772)
+||+.++++|+|||+|+++.-+ ........++++++++|+.+.. ..++.- ....++|++.
T Consensus 216 ~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~~~vP~y~~g~~gf~~as~~ 283 (334)
T 1xj5_A 216 PFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTE 283 (334)
T ss_dssp HHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECS
T ss_pred HHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCccccceEEEeCCcccCCceEEEEcccC
Confidence 9999999999999999997433 3444556778999999995332 233332 3456777764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-13 Score=157.90 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=84.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+||.+|+|+|.++..+.... ..+|++||+++.+++.|++.+ |+ .+++++++.+|+.+++....
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl-~~~~v~~i~~D~~~~l~~~~---------- 607 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGL-TGRAHRLIQADCLAWLREAN---------- 607 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC-CSTTEEEEESCHHHHHHHCC----------
T ss_pred CCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHhcC----------
Confidence 4689999999999998887743 347999999999999999987 44 23589999999999987742
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-----CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+||+|++|.-.-..+.. .... .-.+++..+.+.|+|||+|++-...+
T Consensus 608 ----------------------~~fD~Ii~DPP~f~~~~~----~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 608 ----------------------EQFDLIFIDPPTFSNSKR----MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp ----------------------CCEEEEEECCCSBC-----------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred ----------------------CCccEEEECCccccCCcc----chhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 679999997532110000 0011 13567889999999999999766543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=155.67 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=108.5
Q ss_pred CHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~ 106 (772)
..+||+++|.... ..|... .....+..++.... .++.+|||+|||+|.++..++..|. +|+|+|+|+.+++.
T Consensus 32 ~~~~w~~~~~~~~----~~~~~~--~~~~~l~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~ 103 (235)
T 3lcc_A 32 EEGGWEKCWEEEI----TPWDQG--RATPLIVHLVDTSS-LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAK 103 (235)
T ss_dssp HHHHHHHHHHTTC----CTTCCS--SCCHHHHHHHHTTC-SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHH
T ss_pred CHHHHHHHHhcCC----CCcccC--CCCHHHHHHHHhcC-CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence 4679999998753 124422 11222333332211 2456999999999999999988766 69999999999999
Q ss_pred HHHHhccC--CCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 107 MLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 107 a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++++.... ..+++|.++|+.+++ ++++||+|++..+++++...+ ...+++++.++|||||++++..+..
T Consensus 104 a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 104 ANETYGSSPKAEYFSFVKEDVFTWR--PTELFDLIFDYVFFCAIEPEM-----RPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp HHHHHTTSGGGGGEEEECCCTTTCC--CSSCEEEEEEESSTTTSCGGG-----HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHhhccCCCcceEEEECchhcCC--CCCCeeEEEEChhhhcCCHHH-----HHHHHHHHHHHCCCCcEEEEEEecc
Confidence 98887542 246999999999987 567999999999999986433 6899999999999999999988754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=153.25 Aligned_cols=139 Identities=21% Similarity=0.373 Sum_probs=101.6
Q ss_pred CHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~ 106 (772)
..+||+.+|.... .....++. .+..++. ++.+|||+|||+|.++..++..|. +|+|+|+|+.+++.
T Consensus 2 ~~~yw~~~~~~~~-~~~~~~~~-------~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~ 67 (235)
T 3sm3_A 2 PESYWEKVSGKNI-PSSLDLYP-------IIHNYLQ-----EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRL 67 (235)
T ss_dssp -----------------CCCCT-------THHHHCC-----TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred chhHHHHHhhccC-CCHHHHHH-------HHHHhCC-----CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHH
Confidence 3579999887542 22222222 2555553 578999999999999999999976 79999999999999
Q ss_pred HHHHhccCCC------CcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 107 MLRRNVRDRS------DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 107 a~~~~~~~~~------~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++++...... ++++.++|+.+++ +++++||+|++..+++++.+++ ....+++++.++|||||++++.++
T Consensus 68 a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 68 AETAARSPGLNQKTGGKAEFKVENASSLS-FHDSSFDFAVMQAFLTSVPDPK----ERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp HHHHTTCCSCCSSSSCEEEEEECCTTSCC-SCTTCEEEEEEESCGGGCCCHH----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhcCCccccCcceEEEEecccccC-CCCCceeEEEEcchhhcCCCHH----HHHHHHHHHHHHcCCCeEEEEEEC
Confidence 9887754433 5799999999998 8899999999999999987632 155899999999999999999988
Q ss_pred Cchh
Q 004133 181 AESH 184 (772)
Q Consensus 181 ~~~~ 184 (772)
....
T Consensus 143 ~~~~ 146 (235)
T 3sm3_A 143 GQNW 146 (235)
T ss_dssp BCCT
T ss_pred Ccch
Confidence 7543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=155.95 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++.... ..++++.++|+.+++ +++++||+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-CCCCCEEEEEEcchhh
Confidence 57899999999999999998887668999999999999998887543 346899999999998 7888999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++.++. ...+++++.++|||||++++.+..
T Consensus 158 ~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 158 HLTDQH-----LAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hCCHHH-----HHHHHHHHHHhcCCCeEEEEEEcc
Confidence 986533 568999999999999999997754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=151.65 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=111.9
Q ss_pred CHHHHHHHHHhcCCCCccc----cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHH
Q 004133 27 SKENWDKFFTIRGIGDSFE----WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~e----W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~ 102 (772)
+.++|++.|... +.+. |+.. ..+...+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.
T Consensus 13 ~~~~~~~~~~~~---~~w~~~~~~~~~-~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~ 84 (216)
T 3ofk_A 13 TYQSLERELAND---DPWRLDDNPFER-ERHTQLLRLSLSS---GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPR 84 (216)
T ss_dssp HHHHHHHHHTSS---SGGGTTTCHHHH-HHHHHHHHHHTTT---SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHH
T ss_pred hHHHHHHHhcCC---CCcccccCHhHH-HHHHHHHHHHccc---CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHH
Confidence 578999999765 2222 2221 1233444445544 5678999999999999999999875 7999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 103 VISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 103 ~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++.++++... .+++++.++|+.+++ ++++||+|++..+++++.+++ ....+++++.++|||||++++.+...
T Consensus 85 ~~~~a~~~~~~-~~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 85 AIGRACQRTKR-WSHISWAATDILQFS--TAELFDLIVVAEVLYYLEDMT----QMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp HHHHHHHHTTT-CSSEEEEECCTTTCC--CSCCEEEEEEESCGGGSSSHH----HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHHhccc-CCCeEEEEcchhhCC--CCCCccEEEEccHHHhCCCHH----HHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999887743 458999999999987 678999999999999997632 25788999999999999999987654
Q ss_pred h
Q 004133 183 S 183 (772)
Q Consensus 183 ~ 183 (772)
.
T Consensus 158 ~ 158 (216)
T 3ofk_A 158 A 158 (216)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=157.99 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=97.0
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+...|..+.. .+.+|||+|||+|.++..|++.+. +|+|+|+|+.|++.|+ ..++++|.++|+.+++
T Consensus 27 ~~l~~~l~~~~~-----~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~-----~~~~v~~~~~~~e~~~- 94 (257)
T 4hg2_A 27 RALFRWLGEVAP-----ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQAL-----RHPRVTYAVAPAEDTG- 94 (257)
T ss_dssp HHHHHHHHHHSS-----CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCC-----CCTTEEEEECCTTCCC-
T ss_pred HHHHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhh-----hcCCceeehhhhhhhc-
Confidence 355566666653 357999999999999999999875 7999999999997663 3468999999999999
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++++||+|++..++|++. ..+++++++|+|||||+|++..+....
T Consensus 95 ~~~~sfD~v~~~~~~h~~~--------~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 95 LPPASVDVAIAAQAMHWFD--------LDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp CCSSCEEEEEECSCCTTCC--------HHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred ccCCcccEEEEeeehhHhh--------HHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 9999999999999998873 357999999999999999999887543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-15 Score=155.91 Aligned_cols=107 Identities=18% Similarity=0.152 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC---CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG---FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g---~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
.++.+|||+|||+|.++..|++.. ..+|+|+|+|+.||+.|+++....+ .+++|+++|+.+++ + +.||+|++
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-~--~~~d~v~~ 145 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I--ENASMVVL 145 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-C--CSEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-c--ccccccee
Confidence 478999999999999999998861 1369999999999999998875433 47999999999987 5 46999999
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+++++..++ ...+|++++|+|||||+|++.+..
T Consensus 146 ~~~l~~~~~~~-----~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 146 NFTLQFLEPSE-----RQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp ESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeeeeecCchh-----HhHHHHHHHHHcCCCcEEEEEecc
Confidence 99999986543 678999999999999999987644
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=150.62 Aligned_cols=105 Identities=16% Similarity=0.247 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.++++.. ..++++.++|+.+++ +++++||+|++..+++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 119 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIA-IEPDAYNVVLSSLALH 119 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCC-CCTTCEEEEEEESCGG
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCC-CCCCCeEEEEEchhhh
Confidence 5788999999999999999999987689999999999999988764 568999999999998 8899999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++.+ ...+++++.++|||||++++....
T Consensus 120 ~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 120 YIAS-------FDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp GCSC-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhh-------HHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9854 579999999999999999988655
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=145.98 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=108.1
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a 107 (772)
.++|+..+... |...+..+...+...+.. .++ +|||+|||+|.++..+++.+..+|+|+|+|+.+++.+
T Consensus 14 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a 82 (219)
T 3dlc_A 14 AKNMDEISKTL-------FAPIYPIIAENIINRFGI---TAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIA 82 (219)
T ss_dssp HHHHHHHHHTT-------TTTHHHHHHHHHHHHHCC---CEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHH
T ss_pred hhhHHHHHHHh-------hccccHHHHHHHHHhcCC---CCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHH
Confidence 45676666543 122244556666666654 344 9999999999999999987334799999999999999
Q ss_pred HHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 108 LRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 108 ~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++..... .++++.++|+.+++ +++++||+|++..+++++.+ ...+++++.++|||||++++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 83 LKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSRGSVFFWED-------VATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp HHHHHHTTCTTTEEEEECBTTBCS-SCTTCEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHhccccCceEEEEcCHHHCC-CCcccccEEEECchHhhccC-------HHHHHHHHHHhCCCCCEEEEEecc
Confidence 88875543 37999999999999 89999999999999999854 578999999999999999987643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-15 Score=150.42 Aligned_cols=117 Identities=26% Similarity=0.386 Sum_probs=101.2
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+...+..++. ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++. ...+++++++|+.+++
T Consensus 41 ~~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~d~~~~~- 111 (242)
T 3l8d_A 41 STIIPFFEQYVK-----KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG--EGPDLSFIKGDLSSLP- 111 (242)
T ss_dssp TTHHHHHHHHSC-----TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT--CBTTEEEEECBTTBCS-
T ss_pred HHHHHHHHHHcC-----CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc--ccCCceEEEcchhcCC-
Confidence 355566666663 578999999999999999999976 7999999999999997764 3468999999999998
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++++||+|++.++++++.+ ...++++++++|+|||++++.++...
T Consensus 112 ~~~~~fD~v~~~~~l~~~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 112 FENEQFEAIMAINSLEWTEE-------PLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp SCTTCEEEEEEESCTTSSSC-------HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCCCCccEEEEcChHhhccC-------HHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 88999999999999999855 56899999999999999999886543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=158.52 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHhcCCCC----ccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeC
Q 004133 24 DFTSKENWDKFFTIRGIGD----SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF 99 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~----~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDi 99 (772)
.|....||+.+|....... ..+| +...+.+++.. ...++.+|||+|||+|.++..++..|+.+|+|+|+
T Consensus 14 ~~~~~~~~~~~y~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~ 86 (263)
T 2a14_A 14 HFLPRDYLATYYSFDGSPSPEAEMLKF------NLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDF 86 (263)
T ss_dssp HCCHHHHHHHHCCCCCSCCHHHHHHHH------HHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEES
T ss_pred ccCHHHHHHHhcCCCcccchhhHHHHH------HHHHHHHHhcC-CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccc
Confidence 3667889999997652111 1223 22334444422 12467899999999999988887778778999999
Q ss_pred CHHHHHHHHHHhccCCC------------------------------CcE-EEEeeccCcccc---cCCCccEEEecccc
Q 004133 100 SKVVISDMLRRNVRDRS------------------------------DMR-WRVMDMTSMQVF---MDETFDVILDKGGL 145 (772)
Q Consensus 100 S~~~I~~a~~~~~~~~~------------------------------~v~-f~~~D~~~l~~~---~~~sfDvVi~~~~l 145 (772)
|+.||+.+++++..... ++. +.++|+.+...+ ..++||+|++..+|
T Consensus 87 s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l 166 (263)
T 2a14_A 87 TDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM 166 (263)
T ss_dssp CHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred cHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHH
Confidence 99999999876533211 133 899999984213 25799999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++... ......++++++++|||||+|++...
T Consensus 167 ~~i~~~---~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 167 ECACCS---LDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHCSS---HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhcCC---HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 987432 11267899999999999999999864
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=149.32 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=108.9
Q ss_pred CHHHHHHHHHhcC-CCCccccccc-hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHH
Q 004133 27 SKENWDKFFTIRG-IGDSFEWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (772)
Q Consensus 27 ~~~yWd~~y~~~~-~~~~~eW~~~-~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I 104 (772)
..++|+++|.... .....-|... .......+..++.. ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.|+
T Consensus 15 ~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~ 91 (245)
T 3ggd_A 15 VADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELL--FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSAL 91 (245)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTCCCGGGTHHHHHHHHTTT--SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHH
T ss_pred hHHHHHHHHHhcccCCccceecchhHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHH
Confidence 4667777776531 0111223222 22333444444432 24678999999999999999999877 799999999999
Q ss_pred HHHHHHhccCCCCcEEEEeeccCcccccC-----CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 105 SDMLRRNVRDRSDMRWRVMDMTSMQVFMD-----ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 105 ~~a~~~~~~~~~~v~f~~~D~~~l~~~~~-----~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+.+++++ ...+++|+++|+.+++ +.. ..||+|++..+++++...+ ...+++++.++|||||++++.+
T Consensus 92 ~~a~~~~--~~~~~~~~~~d~~~~~-~~~~~~~~~~~d~v~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 92 EIAAKEN--TAANISYRLLDGLVPE-QAAQIHSEIGDANIYMRTGFHHIPVEK-----RELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp HHHHHHS--CCTTEEEEECCTTCHH-HHHHHHHHHCSCEEEEESSSTTSCGGG-----HHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHhC--cccCceEEECcccccc-cccccccccCccEEEEcchhhcCCHHH-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 9998877 3348999999999976 332 3499999999999986433 6899999999999999999998
Q ss_pred cCchh
Q 004133 180 LAESH 184 (772)
Q Consensus 180 ~~~~~ 184 (772)
+..+.
T Consensus 164 ~~~~~ 168 (245)
T 3ggd_A 164 LGTGC 168 (245)
T ss_dssp ECTTH
T ss_pred CCccc
Confidence 77543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-15 Score=154.04 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++.... .++++.++|+.+++ +++++||+|++..+++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETAT-LPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCC-CCSSCEEEEEEESCGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCC-CCCCCeEEEEEcchhh
Confidence 568899999999999999999887667999999999999998887443 67999999999998 8889999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++.+.+ ...+++++.++|||||++++.+.
T Consensus 170 ~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 170 YLTDAD-----FVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 985422 67999999999999999999874
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=152.15 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++....+ .++++.++|+.+++ +++++||+|++.+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~ 158 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQD 158 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-CCCCCEeEEEecc
Confidence 57889999999999999999987 65 79999999999999988764433 47999999999999 8999999999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++++.+ ...+++++.++|||||++++.+....
T Consensus 159 ~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 159 AFLHSPD-------KLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp CGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hhhhcCC-------HHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999866 57999999999999999999876543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=146.70 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=92.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.++++.. .++++.++|+.+++ ++ ++||+|++..+++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~-~~-~~fD~v~~~~~l~ 117 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFE-VP-TSIDTIVSTYAFH 117 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCC-CC-SCCSEEEEESCGG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcC-CC-CCeEEEEECcchh
Confidence 3678999999999999999999876 79999999999999988763 57999999999998 77 9999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++.+++ ...+++++.++|||||++++.+..
T Consensus 118 ~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 118 HLTDDE-----KNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp GSCHHH-----HHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred cCChHH-----HHHHHHHHHHhcCCCCEEEEEecc
Confidence 997643 345999999999999999998743
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=145.68 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=99.6
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~ 132 (772)
....+..++.. .+.+|||+|||+|.++..++..|. +|+|+|+|+.|++.++++. ++++++++|+.+++ ++
T Consensus 30 ~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~-~~ 99 (203)
T 3h2b_A 30 DRVLIEPWATG----VDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH----PSVTFHHGTITDLS-DS 99 (203)
T ss_dssp THHHHHHHHHH----CCSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC----TTSEEECCCGGGGG-GS
T ss_pred HHHHHHHHhcc----CCCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC----CCCeEEeCcccccc-cC
Confidence 34455666643 378999999999999999999977 6999999999999997763 47999999999998 88
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++||+|++..+++++...+ ...+++++.++|||||++++..+...
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 100 PKRWAGLLAWYSLIHMGPGE-----LPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp CCCEEEEEEESSSTTCCTTT-----HHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred CCCeEEEEehhhHhcCCHHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 99999999999999986433 68999999999999999999886644
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=154.25 Aligned_cols=119 Identities=12% Similarity=0.202 Sum_probs=101.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHH--cCCCeEEEEeCCHHHHHHHHHHhccC---CCCcEEEEeecc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD--AGFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMT 126 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~--~g~~~V~gvDiS~~~I~~a~~~~~~~---~~~v~f~~~D~~ 126 (772)
.+...+..+.. .++.+|||+|||+|.++..+++ .+..+|+|+|+|+.+++.++++.... ..+++|+++|+.
T Consensus 24 ~~~~~l~~~~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 24 DFYKMIDEYHD----GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHCC----SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHhc----CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 55556666654 3689999999999999999996 34568999999999999998887654 568999999999
Q ss_pred CcccccC------CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 127 SMQVFMD------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 127 ~l~~~~~------~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++ +++ ++||+|++..+++++ + ...+++++.++|||||++++.++..+
T Consensus 100 ~~~-~~~~~~~~~~~fD~V~~~~~l~~~-~-------~~~~l~~~~~~LkpgG~l~i~~~~~~ 153 (299)
T 3g5t_A 100 DFK-FLGADSVDKQKIDMITAVECAHWF-D-------FEKFQRSAYANLRKDGTIAIWGYADP 153 (299)
T ss_dssp CCG-GGCTTTTTSSCEEEEEEESCGGGS-C-------HHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_pred hCC-ccccccccCCCeeEEeHhhHHHHh-C-------HHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 998 777 899999999999999 4 57999999999999999999766543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-15 Score=152.90 Aligned_cols=118 Identities=14% Similarity=0.245 Sum_probs=99.6
Q ss_pred HHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCc
Q 004133 58 ISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETF 136 (772)
Q Consensus 58 ~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sf 136 (772)
..++......++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.++++.... +++++.++|+.+++ +++++|
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~-~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN-NKIIFEANDILTKE-FPENNF 121 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC-TTEEEEECCTTTCC-CCTTCE
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC-CCeEEEECccccCC-CCCCcE
Confidence 33333333367889999999999999999987 65 7999999999999998877544 78999999999998 889999
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
|+|++..+++++..++ ...+++++.++|||||++++.++..+
T Consensus 122 D~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 122 DLIYSRDAILALSLEN-----KNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp EEEEEESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred EEEeHHHHHHhcChHH-----HHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 9999999999984322 68999999999999999999886543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-15 Score=147.71 Aligned_cols=136 Identities=20% Similarity=0.253 Sum_probs=103.0
Q ss_pred HHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 004133 30 NWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR 109 (772)
Q Consensus 30 yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~ 109 (772)
||+++|.... ..|..........+...+ .++ +|||+|||+|.++..+++.|. +|+++|+|+.+++.+++
T Consensus 1 ~W~~~y~~~~----~~~~~~~~~~l~~~~~~~-----~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~ 69 (202)
T 2kw5_A 1 MWDERFSQSE----YVYGTEPNDFLVSVANQI-----PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQ 69 (202)
T ss_dssp CCCCCCCCCC----CCCCCCCCSSHHHHHHHS-----CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHH
T ss_pred Chhhhhcccc----hhhccCchHHHHHHHHhC-----CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence 5777776442 223333223232333333 245 999999999999999999876 79999999999999988
Q ss_pred HhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 110 RNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 110 ~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+......++.+.++|+.+++ +++++||+|++.. .++.. .....+++++.++|||||++++.++....
T Consensus 70 ~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~--~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 70 LAQEKGVKITTVQSNLADFD-IVADAWEGIVSIF--CHLPS-----SLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp HHHHHTCCEEEECCBTTTBS-CCTTTCSEEEEEC--CCCCH-----HHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred HHHhcCCceEEEEcChhhcC-CCcCCccEEEEEh--hcCCH-----HHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 87655568999999999998 8889999999843 33321 12689999999999999999999877544
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=149.65 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++... +++++++|+.++. ++++||+|++.+++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~ 115 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD---GITYIHSRFEDAQ--LPRRYDNIVLTHVLEH 115 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGCC--CSSCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHcC--cCCcccEEEEhhHHHh
Confidence 567999999999999999998876 699999999999999887643 7999999999874 6789999999999999
Q ss_pred cccCccchHHHHHHHHHHH-hccccCeEEEEEEcCchh
Q 004133 148 LMEPELGHKLGNQYLSEVK-RLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~-rvLkpGG~~ii~~~~~~~ 184 (772)
+.+ ...+++++. ++|||||++++.+.....
T Consensus 116 ~~~-------~~~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 116 IDD-------PVALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp CSS-------HHHHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred hcC-------HHHHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 965 468999999 999999999998866543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=149.59 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=97.2
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~s 135 (772)
+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++..... ++++|.++|+.+++ +++++
T Consensus 29 l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~ 103 (260)
T 1vl5_A 29 LMQIAAL---KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDER 103 (260)
T ss_dssp HHHHHTC---CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTC
T ss_pred HHHHhCC---CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC-CCCCC
Confidence 4445544 5788999999999999999998865 79999999999999988775443 47999999999999 89999
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
||+|++..+++++.+ ...+|+++.++|||||++++.+..
T Consensus 104 fD~V~~~~~l~~~~d-------~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 104 FHIVTCRIAAHHFPN-------PASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp EEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEEEhhhhHhcCC-------HHHHHHHHHHHcCCCCEEEEEEcC
Confidence 999999999999965 468999999999999999997654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=148.66 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=100.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~ 129 (772)
.....+...+.. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++....+ +++++.++|+.+++
T Consensus 32 ~~~~~~l~~l~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 109 (267)
T 3kkz_A 32 EVTLKALSFIDN--LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109 (267)
T ss_dssp HHHHHHHTTCCC--CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HHHHHHHHhccc--CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC
Confidence 344444455441 25788999999999999999999866689999999999999988875544 46999999999998
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++++||+|++.++++++ + ...+++++.++|||||++++.+..
T Consensus 110 -~~~~~fD~i~~~~~~~~~-~-------~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 110 -FRNEELDLIWSEGAIYNI-G-------FERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp -CCTTCEEEEEESSCGGGT-C-------HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred -CCCCCEEEEEEcCCceec-C-------HHHHHHHHHHHcCCCCEEEEEEee
Confidence 889999999999999998 3 468999999999999999998753
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=147.16 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=98.9
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~ 129 (772)
.....+...+.. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.++++....+. +++++++|+.+++
T Consensus 32 ~~~~~~l~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 109 (257)
T 3f4k_A 32 EATRKAVSFINE--LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109 (257)
T ss_dssp HHHHHHHTTSCC--CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHHHHhc--CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence 444444455432 246789999999999999999998655899999999999999888755442 4999999999999
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++++||+|++.++++++ + ...+++++.++|||||++++.+.
T Consensus 110 -~~~~~fD~v~~~~~l~~~-~-------~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 110 -FQNEELDLIWSEGAIYNI-G-------FERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp -SCTTCEEEEEEESCSCCC-C-------HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -CCCCCEEEEEecChHhhc-C-------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 889999999999999998 3 46899999999999999999874
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=140.30 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=117.8
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCC------CCcEEEEeec
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR------SDMRWRVMDM 125 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~------~~v~f~~~D~ 125 (772)
....+..++.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.++++..... .++++.++|+
T Consensus 17 ~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 93 (219)
T 3jwg_A 17 RLGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL 93 (219)
T ss_dssp HHHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred HHHHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence 33445555543 4678999999999999999998753 589999999999999988864332 2799999999
Q ss_pred cCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh--------------------
Q 004133 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-------------------- 185 (772)
Q Consensus 126 ~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~-------------------- 185 (772)
..++ +++++||+|++..+++++.+++ ...+++++.++|||||+++.........
T Consensus 94 ~~~~-~~~~~fD~V~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 3jwg_A 94 VYRD-KRFSGYDAATVIEVIEHLDENR-----LQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWT 167 (219)
T ss_dssp SSCC-GGGTTCSEEEEESCGGGCCHHH-----HHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBC
T ss_pred cccc-cccCCCCEEEEHHHHHhCCHHH-----HHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeec
Confidence 8888 7789999999999999996533 5799999999999999776655432200
Q ss_pred hhccc----ccc-cCCcEEEEEEcCCCCCCCCCcceEEEEEEecC
Q 004133 186 LGLLF----PKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 225 (772)
Q Consensus 186 ~~~l~----~~~-~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~ 225 (772)
..++. ... ..+|.+....+..... .-..+.-+-+++|..
T Consensus 168 ~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~-~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 168 RKEFQTWAVKVAEKYGYSVRFLQIGEIDD-EFGSPTQMGVFTLGA 211 (219)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEESCCCT-TSCCSEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCccc-cCCCCeEEEEEeccC
Confidence 00111 111 2367777777654332 345666677777753
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=148.77 Aligned_cols=136 Identities=17% Similarity=0.141 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a 107 (772)
.++|+..+.... ..|......+...+...+ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+
T Consensus 19 a~~yd~~~~~~~----~~~~~~~~~~~~~l~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a 88 (263)
T 3pfg_A 19 AELYDLVHQGKG----KDYHREAADLAALVRRHS-----PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIA 88 (263)
T ss_dssp HHHHHHHHHHTT----CCHHHHHHHHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhhcCC----CCHHHHHHHHHHHHHhhC-----CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHH
Confidence 467877776431 113222233444444444 2468999999999999999999876 799999999999999
Q ss_pred HHHhccCCCCcEEEEeeccCcccccCCCccEEEecc-cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 108 LRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 108 ~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~-~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++. ++++++++|+.+++ + +++||+|++.. +++++.++++ ...+++++.++|||||++++..+..+
T Consensus 89 ~~~~----~~~~~~~~d~~~~~-~-~~~fD~v~~~~~~l~~~~~~~~----~~~~l~~~~~~L~pgG~l~i~~~~~~ 155 (263)
T 3pfg_A 89 RRRN----PDAVLHHGDMRDFS-L-GRRFSAVTCMFSSIGHLAGQAE----LDAALERFAAHVLPDGVVVVEPWWFP 155 (263)
T ss_dssp HHHC----TTSEEEECCTTTCC-C-SCCEEEEEECTTGGGGSCHHHH----HHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred HhhC----CCCEEEECChHHCC-c-cCCcCEEEEcCchhhhcCCHHH----HHHHHHHHHHhcCCCcEEEEEeccCh
Confidence 8775 37999999999998 5 78999999998 9999864322 67899999999999999999765433
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=150.27 Aligned_cols=159 Identities=16% Similarity=0.224 Sum_probs=116.8
Q ss_pred chhcccccCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEE
Q 004133 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (772)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~ 95 (772)
..+|..+.+-...++|+.++... ...+..+...+...+.. .++.+|||+|||+|.++..+++.|. +|+
T Consensus 16 ~~~~~~y~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~ 83 (293)
T 3thr_A 16 EGIPDQYADGEAARVWQLYIGDT--------RSRTAEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVT 83 (293)
T ss_dssp TTSCCTTTTCHHHHHHHHHHTCC--------SCBCHHHHHHHHHHHHH---TTCCEEEETTCTTSHHHHHHHHTTC-EEE
T ss_pred ccChhhhcCchHHHHHHHHHhcC--------cchHHHHHHHHHHHhcc---cCCCEEEEecCCCCHHHHHHHHCCC-eEE
Confidence 33554443333455888877433 22234555666666654 4678999999999999999999987 799
Q ss_pred EEeCCHHHHHHHHHHhccCC-----CCcEEEEeeccCccc--ccCCCccEEEec-ccccccccCccchHHHHHHHHHHHh
Q 004133 96 NVDFSKVVISDMLRRNVRDR-----SDMRWRVMDMTSMQV--FMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKR 167 (772)
Q Consensus 96 gvDiS~~~I~~a~~~~~~~~-----~~v~f~~~D~~~l~~--~~~~sfDvVi~~-~~l~~l~~~~~~~~~~~~~l~ei~r 167 (772)
|+|+|+.|++.++++..... .++.+.++|+.+++. +++++||+|++. .+++++.+.........++++++++
T Consensus 84 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~ 163 (293)
T 3thr_A 84 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 163 (293)
T ss_dssp EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHH
Confidence 99999999999987653222 368899999987641 367899999998 7999987621112236899999999
Q ss_pred ccccCeEEEEEEcCchhhh
Q 004133 168 LLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 168 vLkpGG~~ii~~~~~~~~~ 186 (772)
+|||||++++.......+.
T Consensus 164 ~LkpgG~l~~~~~~~~~~~ 182 (293)
T 3thr_A 164 MVRPGGLLVIDHRNYDYIL 182 (293)
T ss_dssp TEEEEEEEEEEEECHHHHH
T ss_pred HcCCCeEEEEEeCCHHHHh
Confidence 9999999999887655544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-14 Score=137.45 Aligned_cols=105 Identities=25% Similarity=0.388 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEec-ccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDK-GGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~-~~l 145 (772)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++. +++++.++|+.+++ +++++||+|++. .++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~----~~~~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 118 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF----PEARWVVGDLSVDQ-ISETDFDLIVSAGNVM 118 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTSEEEECCTTTSC-CCCCCEEEEEECCCCG
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC----CCCcEEEcccccCC-CCCCceeEEEECCcHH
Confidence 3678999999999999999999875 7999999999999997765 36899999999988 788999999998 567
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++..+. ...+++++.++|+|||++++.....
T Consensus 119 ~~~~~~~-----~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 119 GFLAEDG-----REPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred hhcChHH-----HHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 7664322 6789999999999999999876554
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-14 Score=143.34 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=100.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
......+..++.. ..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.++++..... +++++++|+.+++
T Consensus 29 ~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~ 105 (234)
T 3dtn_A 29 DDFYGVSVSIASV--DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYD 105 (234)
T ss_dssp HHHHHHHHHTCCC--SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCC
T ss_pred HHHHHHHHHHhhc--CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccC
Confidence 3444555566542 2467899999999999999999883 3479999999999999988874433 8999999999998
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++ ++||+|++..+++++.+++ ...++++++++|||||++++.++..+
T Consensus 106 -~~-~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 106 -FE-EKYDMVVSALSIHHLEDED-----KKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp -CC-SCEEEEEEESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred -CC-CCceEEEEeCccccCCHHH-----HHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 66 8999999999999996532 45799999999999999999886543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=147.05 Aligned_cols=134 Identities=15% Similarity=0.081 Sum_probs=104.4
Q ss_pred CHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~ 106 (772)
..+||..+.... ......+...+..++... .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.
T Consensus 10 ~~~~y~~~~~~~--------~~~~~~~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~ 78 (240)
T 3dli_A 10 TSDYYFLFEEKF--------RGSRELVKARLRRYIPYF--KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKF 78 (240)
T ss_dssp --CHHHHHHHHH--------TCCHHHHHHHHGGGGGGT--TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHH
T ss_pred hHHHHHHHHHHh--------CCCHHHHHHHHHHHHhhh--cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 345666655432 223334555555555431 4678999999999999999999877 59999999999998
Q ss_pred HHHHhccCCCCcEEEEeeccCc--ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 107 MLRRNVRDRSDMRWRVMDMTSM--QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 107 a~~~~~~~~~~v~f~~~D~~~l--~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
++++ +++.++|+.++ + +++++||+|++..+++++..++ ...+++++.++|||||++++.+.....
T Consensus 79 a~~~-------~~~~~~d~~~~~~~-~~~~~fD~i~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (240)
T 3dli_A 79 CEGK-------FNVVKSDAIEYLKS-LPDKYLDGVMISHFVEHLDPER-----LFELLSLCYSKMKYSSYIVIESPNPTS 145 (240)
T ss_dssp HHTT-------SEEECSCHHHHHHT-SCTTCBSEEEEESCGGGSCGGG-----HHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred HHhh-------cceeeccHHHHhhh-cCCCCeeEEEECCchhhCCcHH-----HHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence 8654 78999999886 6 7889999999999999997543 689999999999999999998876543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-14 Score=147.78 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..++..|. +|+|+|+|+.+++.++++....+.++++.++|+.+++ + +++||+|++..++++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN-I-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-C-CSCEEEEEECSSGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc-c-cCCccEEEEccchhh
Confidence 578999999999999999999987 7999999999999999887666668999999999988 5 889999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+..+. ...+++++.++|||||+++++..
T Consensus 197 ~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 197 LNRER-----VPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp SCGGG-----HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhcCCCcEEEEEEe
Confidence 86544 67999999999999999877654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-14 Score=142.25 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=97.0
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC------CCcEEEEeecc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR------SDMRWRVMDMT 126 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~------~~v~f~~~D~~ 126 (772)
...+..++.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.+++++.... .++++.++|+.
T Consensus 18 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 18 MNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 3445555543 467899999999999999999974 3589999999999999988874332 27999999998
Q ss_pred CcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 127 SMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 127 ~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
..+ +++++||+|++..+++++.++. ...+++++.++|||||++++...
T Consensus 95 ~~~-~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 95 YQD-KRFHGYDAATVIEVIEHLDLSR-----LGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp SCC-GGGCSCSEEEEESCGGGCCHHH-----HHHHHHHHHTTTCCSEEEEEEEB
T ss_pred ccc-ccCCCcCEEeeHHHHHcCCHHH-----HHHHHHHHHHHcCCCEEEEEccC
Confidence 887 7778999999999999996533 67999999999999997776654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.8e-14 Score=136.84 Aligned_cols=152 Identities=9% Similarity=0.083 Sum_probs=103.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEec-cc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDK-GG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~-~~ 144 (772)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+ .++++++.|+.+++.+.+++||+|++. +.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 468899999999999999999985 479999999999999988875433 579999988888653557899999876 32
Q ss_pred ccccccC-ccchHHHHHHHHHHHhccccCeEEEEEEcCchh-------hhhccccccc-CCcEEEEEEcCCCCCCCCCcc
Q 004133 145 LDALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-------VLGLLFPKFR-FGWKMSVHAIPQKSSSEPSLQ 215 (772)
Q Consensus 145 l~~l~~~-~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~-------~~~~l~~~~~-~~w~~~~~~~~~~~~~~~~l~ 215 (772)
+...... ...+.....+++++.++|||||++++..+.... ....++.... .+|.+....... ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~ 175 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN----QINTP 175 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS----CSSCC
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc----cCCCC
Confidence 2210000 001122568899999999999999998875321 1112333332 357776666543 22356
Q ss_pred eEEEEEEe
Q 004133 216 TFMVVADK 223 (772)
Q Consensus 216 ~f~~~~~K 223 (772)
++++.+.|
T Consensus 176 ~~~~~i~~ 183 (185)
T 3mti_A 176 PFLVMLEK 183 (185)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEe
Confidence 67777666
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-14 Score=143.99 Aligned_cols=128 Identities=19% Similarity=0.221 Sum_probs=104.3
Q ss_pred chhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc
Q 004133 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (772)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l 128 (772)
.+......+..++... ..++.+|||+|||+|.++..+++.|. +++|+|+|+.|++.++++......++++.++|+.++
T Consensus 19 ~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 96 (246)
T 1y8c_A 19 DYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL 96 (246)
T ss_dssp CHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC
T ss_pred cHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC
Confidence 4445566666666541 12678999999999999999999876 699999999999999888765555899999999998
Q ss_pred ccccCCCccEEEecc-cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 129 QVFMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~-~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+ ++ ++||+|++.. +++++.+++ ....+++++.++|||||++++.......
T Consensus 97 ~-~~-~~fD~v~~~~~~l~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 147 (246)
T 1y8c_A 97 N-IN-RKFDLITCCLDSTNYIIDSD----DLKKYFKAVSNHLKEGGVFIFDINSYYK 147 (246)
T ss_dssp C-CS-CCEEEEEECTTGGGGCCSHH----HHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred C-cc-CCceEEEEcCccccccCCHH----HHHHHHHHHHHhcCCCcEEEEEecCHHH
Confidence 8 66 8999999998 999985422 2679999999999999999986665443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-14 Score=143.03 Aligned_cols=111 Identities=28% Similarity=0.372 Sum_probs=94.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++......+++++++|+.+++ +++++||+|++..++++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-SCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC-CCCCcEEEEEEcCchHh
Confidence 478999999999999999999876 7999999999999998887665678999999999988 88899999999988544
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
....+ ...+++++.++|||||++++.+......
T Consensus 116 ~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 148 (227)
T 1ve3_A 116 FEPLE-----LNQVFKEVRRVLKPSGKFIMYFTDLREL 148 (227)
T ss_dssp CCHHH-----HHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred CCHHH-----HHHHHHHHHHHcCCCcEEEEEecChHHH
Confidence 33211 5789999999999999999988765443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-14 Score=143.91 Aligned_cols=114 Identities=17% Similarity=0.291 Sum_probs=98.8
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~ 134 (772)
..+..++.. .++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.++++... .++++.++|+.+++ ++++
T Consensus 33 ~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~-~~~~ 106 (243)
T 3bkw_A 33 PALRAMLPE---VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKLH-LPQD 106 (243)
T ss_dssp HHHHHHSCC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGCC-CCTT
T ss_pred HHHHHhccc---cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhcc-CCCC
Confidence 346666654 46789999999999999999998775799999999999999877633 47999999999998 8889
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+||+|++..+++++.+ ...++++++++|||||++++.+..
T Consensus 107 ~fD~v~~~~~l~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 107 SFDLAYSSLALHYVED-------VARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp CEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CceEEEEeccccccch-------HHHHHHHHHHhcCcCcEEEEEeCC
Confidence 9999999999999854 579999999999999999998754
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=145.24 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a 107 (772)
.+||+..|.... ..+......+..++......++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.+
T Consensus 9 a~~yd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a 79 (252)
T 1wzn_A 9 AEYYDTIYRRRI--------ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVA 79 (252)
T ss_dssp GGGHHHHTHHHH--------HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcch--------hhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHH
Confidence 468888776431 11122233344443322224678999999999999999999886 799999999999999
Q ss_pred HHHhccCCCCcEEEEeeccCcccccCCCccEEEeccc-ccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 108 LRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG-LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 108 ~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~-l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++......++++.++|+.+++ ++ ++||+|++... +.++..+ ....+++++.++|||||++++..
T Consensus 80 ~~~~~~~~~~v~~~~~d~~~~~-~~-~~fD~v~~~~~~~~~~~~~-----~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 80 RRKAKERNLKIEFLQGDVLEIA-FK-NEFDAVTMFFSTIMYFDEE-----DLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp HHHHHHTTCCCEEEESCGGGCC-CC-SCEEEEEECSSGGGGSCHH-----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhcCCceEEEECChhhcc-cC-CCccEEEEcCCchhcCCHH-----HHHHHHHHHHHHcCCCeEEEEec
Confidence 9887666668999999999987 54 78999998643 4443221 26899999999999999998754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-14 Score=150.05 Aligned_cols=151 Identities=16% Similarity=0.164 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHH
Q 004133 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~ 103 (772)
.|...+||+.+|..........++.. .....+..++.. ...++.+|||+|||+|.++..++..+..+|+|+|+|+.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~ 91 (265)
T 2i62_A 15 HFNPRDYLEKYYSFGSRHCAENEILR--HLLKNLFKIFCL-GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQN 91 (265)
T ss_dssp HCCHHHHHHHHHCCCSSCHHHHHHHH--HHHHHHHHHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHH
T ss_pred hcCHHHHHHHHhCcCCcchhHHHHHH--hhHHHHHHHhcc-cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHH
Confidence 35667899999976521100011111 111223333332 124678999999999999999988876679999999999
Q ss_pred HHHHHHHhccCCC------------------------------Cc-EEEEeeccCcccccC---CCccEEEecccccccc
Q 004133 104 ISDMLRRNVRDRS------------------------------DM-RWRVMDMTSMQVFMD---ETFDVILDKGGLDALM 149 (772)
Q Consensus 104 I~~a~~~~~~~~~------------------------------~v-~f~~~D~~~l~~~~~---~sfDvVi~~~~l~~l~ 149 (772)
++.++++...... ++ ++.++|+.+...+++ ++||+|++..+++++.
T Consensus 92 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~ 171 (265)
T 2i62_A 92 LWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC 171 (265)
T ss_dssp HHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC
T ss_pred HHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc
Confidence 9999887643211 17 899999998752355 8999999999999664
Q ss_pred cCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 150 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 150 ~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.. ......+++++.++|||||++++...
T Consensus 172 ~~---~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 172 PD---LPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp SS---HHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CC---hHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 42 11267999999999999999999874
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-14 Score=141.83 Aligned_cols=111 Identities=16% Similarity=0.268 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCCchhH-HHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLS-EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls-~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++ ..++..|. +|+|+|+|+.+++.++++......++++.++|+.+++ +++++||+|++.+++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGTI 99 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-SCTTCEEEEEECSCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC-CCCCceeEEEEcChH
Confidence 35789999999999985 44555565 7999999999999998887655578999999999998 888999999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++...+ ...++++++++|||||++++.++..+.
T Consensus 100 ~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 100 FHMRKND-----VKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred HhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 9884222 689999999999999999999877543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-14 Score=144.91 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=98.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
......+...+.. .++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++....+ .+++|.++|+.+
T Consensus 22 ~~~~~~l~~~~~~---~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 97 (256)
T 1nkv_A 22 EEKYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 97 (256)
T ss_dssp HHHHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence 3445556666654 57889999999999999999887 54 79999999999999988875544 369999999999
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++ + +++||+|++.++++++.+ ...++++++++|||||++++.+.
T Consensus 98 ~~-~-~~~fD~V~~~~~~~~~~~-------~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 98 YV-A-NEKCDVAACVGATWIAGG-------FAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CC-C-SSCEEEEEEESCGGGTSS-------SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CC-c-CCCCCEEEECCChHhcCC-------HHHHHHHHHHHcCCCeEEEEecC
Confidence 98 6 889999999999998865 36899999999999999998763
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.5e-14 Score=143.15 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=99.8
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~ 133 (772)
..+...+.. .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+ +++++.++|+.+++ +++
T Consensus 11 ~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~ 85 (239)
T 1xxl_A 11 GLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPD 85 (239)
T ss_dssp HHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCT
T ss_pred chHHHHhCc---CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCC
Confidence 345555554 6789999999999999999998875 79999999999999988764433 47999999999998 889
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++||+|++..+++++.+ ...+++++.++|||||++++.+...
T Consensus 86 ~~fD~v~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSD-------VRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp TCEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred CcEEEEEECCchhhccC-------HHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 99999999999999865 5789999999999999999987654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=152.71 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-------CcEEEEeec------cCcc-cccC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-------DMRWRVMDM------TSMQ-VFMD 133 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-------~v~f~~~D~------~~l~-~~~~ 133 (772)
++.+|||+|||+|..+..++..+..+|+|+|+|+.||+.|++++..... +++|.+.|+ .+++ .+++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4689999999999877767666656899999999999999988754332 267889888 3331 1567
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
++||+|++..+++++.+.++ ...++++++++|||||+|++.+.....+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~----~~~~l~~~~r~LkpGG~~i~~~~~~~~~ 175 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRH----YATVMNNLSELTASGGKVLITTMDGDKL 175 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTT----HHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred CCeeEEEECchHHHhCCHHH----HHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 89999999999988755432 5799999999999999999988775543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=152.76 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=100.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~ 127 (772)
.....+...+.. ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++..... .+++|+++|+.+
T Consensus 70 ~~~~~~~~~~~~----~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 70 SEAREFATRTGP----VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHHHHHHHCC----CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred HHHHHHHHhhCC----CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence 444445555543 345999999999999999999986 69999999999999998876554 579999999999
Q ss_pred cccccCCCccEEEec-ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 128 MQVFMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 128 l~~~~~~sfDvVi~~-~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
++ + +++||+|++. .+++++..+ ....+|+++.++|||||++++.++..+...
T Consensus 145 ~~-~-~~~fD~v~~~~~~~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 197 (299)
T 3g2m_A 145 FA-L-DKRFGTVVISSGSINELDEA-----DRRGLYASVREHLEPGGKFLLSLAMSEAAE 197 (299)
T ss_dssp CC-C-SCCEEEEEECHHHHTTSCHH-----HHHHHHHHHHHHEEEEEEEEEEEECCHHHH
T ss_pred CC-c-CCCcCEEEECCcccccCCHH-----HHHHHHHHHHHHcCCCcEEEEEeecCcccc
Confidence 98 5 7899988854 556665432 268999999999999999999998877654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=142.73 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.....+++++.++|+.+++ +++++||+|++..+++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-LPDESVHGVIVVHLWH 115 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-SCTTCEEEEEEESCGG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-CCCCCeeEEEECCchh
Confidence 4678999999999999999998865 7999999999999998887444568999999999998 8899999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
++.+ ...+++++.++|||||++++.
T Consensus 116 ~~~~-------~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVPD-------WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCTT-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCC-------HHHHHHHHHHHCCCCcEEEEE
Confidence 9865 578999999999999999887
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=139.59 Aligned_cols=102 Identities=25% Similarity=0.350 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..+ +..+++++|+|+.+++.++++. +++++.++|+.+++ +++++||+|++..++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 107 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALP-FPGESFDVVLLFTTLEF 107 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCC-SCSSCEEEEEEESCTTT
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCC-CCCCcEEEEEEcChhhh
Confidence 6789999999999999887 5557999999999999998775 57899999999998 88999999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+.+ ...+++++.++|||||++++.+.....
T Consensus 108 ~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 108 VED-------VERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp CSC-------HHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred cCC-------HHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 865 578999999999999999999876543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-14 Score=142.62 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=98.5
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~ 133 (772)
+...+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.++++..... .++++.++|+.+++ +++
T Consensus 29 ~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~ 104 (219)
T 3dh0_A 29 VLKEFGL---KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-LPD 104 (219)
T ss_dssp HHHHHTC---CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-SCS
T ss_pred HHHHhCC---CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-CCC
Confidence 4444543 567899999999999999999874 3479999999999999988875433 47999999999998 889
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++||+|++..+++++.+ ...+++++.++|||||++++.++..
T Consensus 105 ~~fD~v~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~ 146 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSE-------PLKFLEELKRVAKPFAYLAIIDWKK 146 (219)
T ss_dssp SCEEEEEEESCGGGCSS-------HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred CCeeEEEeehhhhhcCC-------HHHHHHHHHHHhCCCeEEEEEEecc
Confidence 99999999999999855 5789999999999999999987653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=133.76 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++ .+++++.++| ++ +++++||+|++..+++
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~v~~~~~d---~~-~~~~~~D~v~~~~~l~ 86 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK----FDSVITLSDP---KE-IPDNSVDFILFANSFH 86 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH----CTTSEEESSG---GG-SCTTCEEEEEEESCST
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh----CCCcEEEeCC---CC-CCCCceEEEEEccchh
Confidence 4678999999999999999999875 899999999999999776 4589999999 66 7889999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++.+ ...+++++.++|||||++++.++...
T Consensus 87 ~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 87 DMDD-------KQHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp TCSC-------HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cccC-------HHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 9854 57999999999999999999987643
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-14 Score=140.36 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=96.2
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~s 135 (772)
.+...+... .++.+|||+|||+|.++..++..|. +|+|+|+|+.+++.+++ ....++++.++|+.++ +++++
T Consensus 36 ~~~~~l~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~---~~~~~~~~~~~d~~~~--~~~~~ 107 (218)
T 3ou2_A 36 AALERLRAG--NIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR---HGLDNVEFRQQDLFDW--TPDRQ 107 (218)
T ss_dssp HHHHHHTTT--TSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG---GCCTTEEEEECCTTSC--CCSSC
T ss_pred HHHHHHhcC--CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh---cCCCCeEEEecccccC--CCCCc
Confidence 344555421 4668999999999999999999876 79999999999998866 2336899999999987 47899
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
||+|++..+++++.++. ...+++++.++|||||++++.++..
T Consensus 108 ~D~v~~~~~l~~~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 108 WDAVFFAHWLAHVPDDR-----FEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EEEEEEESCGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred eeEEEEechhhcCCHHH-----HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999999999987643 5799999999999999999998775
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=139.16 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++. ++.+.++|+.+++ ++++||+|++..+++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 113 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD--AIDAYDAVWAHACLL 113 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC--CCSCEEEEEECSCGG
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC--CCCcEEEEEecCchh
Confidence 3578999999999999999999876 7999999999999998876 5788999999987 688999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++..++ ...+++++.++|||||++++....
T Consensus 114 ~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 114 HVPRDE-----LADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCHHH-----HHHHHHHHHHhcCCCcEEEEEEcC
Confidence 986322 679999999999999999988654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=143.82 Aligned_cols=108 Identities=19% Similarity=0.329 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+ .++++.++|+.+++ +++++||+|++..+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-FEDASFDAVWALES 138 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-CCCCCccEEEEech
Confidence 5788999999999999999988633479999999999999988875443 36999999999999 88999999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++++.+ ...+++++.++|||||++++.++..
T Consensus 139 l~~~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 139 LHHMPD-------RGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp TTTSSC-------HHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred hhhCCC-------HHHHHHHHHHHcCCCeEEEEEEeec
Confidence 999865 4689999999999999999987653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=145.40 Aligned_cols=106 Identities=23% Similarity=0.360 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++..... +++++.++|+.+++ +++++||+|++..+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-FEDSSFDHIFVCFV 114 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-SCTTCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-CCCCCeeEEEEech
Confidence 578899999999999999999883 3579999999999999988875543 47999999999998 88999999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++++.+ ...+++++.++|||||++++.+.
T Consensus 115 l~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 115 LEHLQS-------PEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp GGGCSC-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcCC-------HHHHHHHHHHHcCCCcEEEEEEc
Confidence 999976 46899999999999999999864
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-14 Score=145.59 Aligned_cols=117 Identities=17% Similarity=0.247 Sum_probs=99.8
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
+..+...+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++ .+++|.++|+.+++
T Consensus 19 ~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-----~~~~~~~~d~~~~~ 89 (261)
T 3ege_A 19 DIRIVNAIINLLNL---PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVH-----PQVEWFTGYAENLA 89 (261)
T ss_dssp CHHHHHHHHHHHCC---CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCC-----TTEEEECCCTTSCC
T ss_pred cHHHHHHHHHHhCC---CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhc-----cCCEEEECchhhCC
Confidence 34566677777764 5789999999999999999998765 799999999998766433 28999999999999
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++++||+|++..+++++.+ ...++++++++|| ||++++.++..+.
T Consensus 90 -~~~~~fD~v~~~~~l~~~~~-------~~~~l~~~~~~Lk-gG~~~~~~~~~~~ 135 (261)
T 3ege_A 90 -LPDKSVDGVISILAIHHFSH-------LEKSFQEMQRIIR-DGTIVLLTFDIRL 135 (261)
T ss_dssp -SCTTCBSEEEEESCGGGCSS-------HHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred -CCCCCEeEEEEcchHhhccC-------HHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence 88999999999999999955 5799999999999 9999998887544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=144.42 Aligned_cols=110 Identities=24% Similarity=0.439 Sum_probs=95.0
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCc
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETF 136 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sf 136 (772)
+...+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++. +++++.++|+.+++ + +++|
T Consensus 49 l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~-~-~~~f 118 (279)
T 3ccf_A 49 LLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY----PHLHFDVADARNFR-V-DKPL 118 (279)
T ss_dssp HHHHHCC---CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCC-C-SSCE
T ss_pred HHHHhCC---CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC----CCCEEEECChhhCC-c-CCCc
Confidence 4455544 4678999999999999999998654 7999999999999997765 57999999999998 6 6899
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
|+|++..+++++.+ ...+++++.++|||||++++.+....
T Consensus 119 D~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 119 DAVFSNAMLHWVKE-------PEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp EEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CEEEEcchhhhCcC-------HHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 99999999999865 56899999999999999999877644
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-14 Score=143.76 Aligned_cols=111 Identities=19% Similarity=0.093 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc--ccccCCCccEEEe-cc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QVFMDETFDVILD-KG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l--~~~~~~sfDvVi~-~~ 143 (772)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++......+++++++|+.++ + +++++||+|++ ..
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT-LPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG-SCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcc-cCCCceEEEEECCc
Confidence 36789999999999999999887666899999999999999988866667899999999998 7 88999999998 44
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+ ..... .......++++++|+|||||+|++..+.
T Consensus 138 ~~-~~~~~--~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PL-SEETW--HTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CC-BGGGT--TTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cc-chhhh--hhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 44 22221 1222567899999999999999987654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=144.04 Aligned_cols=109 Identities=15% Similarity=0.232 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++..|. +|+|+|+|+.+++.++++....+ ++++++++|+.+++.+.+++||+|++.+++
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 467999999999999999999876 79999999999999988875543 479999999999865678999999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++.+ ...+++++.++|||||++++.++....
T Consensus 147 ~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (285)
T 4htf_A 147 EWVAD-------PRSVLQTLWSVLRPGGVLSLMFYNAHG 178 (285)
T ss_dssp GGCSC-------HHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred hcccC-------HHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence 99965 468999999999999999999876543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.5e-13 Score=131.43 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=111.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....+ .+++++++|+.+++.+.+++||+|++.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence 46789999999999999999887 34589999999999999988875543 479999999988753566899999987
Q ss_pred ccccccccC--ccchHHHHHHHHHHHhccccCeEEEEEEcCch-------hhhhcccccc-cCCcEEEEEEcCCCCCCCC
Q 004133 143 GGLDALMEP--ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES-------HVLGLLFPKF-RFGWKMSVHAIPQKSSSEP 212 (772)
Q Consensus 143 ~~l~~l~~~--~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~-------~~~~~l~~~~-~~~w~~~~~~~~~~~~~~~ 212 (772)
..+....+. .........+++++.++|||||++++..+... .....++... ..+|.+....+.. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~----~~ 176 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN----QA 176 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT----CC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc----Cc
Confidence 655110000 01112256799999999999999999886531 1122333333 3468777776654 23
Q ss_pred CcceEEEEEEecC
Q 004133 213 SLQTFMVVADKEN 225 (772)
Q Consensus 213 ~l~~f~~~~~K~~ 225 (772)
..++|+++++|..
T Consensus 177 ~~pp~~~~~~~~~ 189 (197)
T 3eey_A 177 NCPPILVCIEKIS 189 (197)
T ss_dssp SCCCEEEEEEECC
T ss_pred cCCCeEEEEEEcc
Confidence 4678888888754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=140.10 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a 107 (772)
.++|+..+.... ..|......+...+..++ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+
T Consensus 9 a~~yd~~~~~~~----~~~~~~~~~~~~~l~~~~-----~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a 78 (239)
T 3bxo_A 9 ADVYDLFYLGRG----KDYAAEASDIADLVRSRT-----PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHA 78 (239)
T ss_dssp HHHHHHHHHHHT----CCHHHHHHHHHHHHHHHC-----TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHH
T ss_pred HHHHHHHhhccH----hhHHHHHHHHHHHHHHhc-----CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHH
Confidence 568888876541 113222233444454444 3578999999999999999998865 799999999999999
Q ss_pred HHHhccCCCCcEEEEeeccCcccccCCCccEEEe-cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 108 LRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILD-KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 108 ~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~-~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++. +++++.++|+.+++ + +++||+|++ ..+++++.+++ ....+++++.++|||||++++.++..
T Consensus 79 ~~~~----~~~~~~~~d~~~~~-~-~~~~D~v~~~~~~~~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 79 RKRL----PDATLHQGDMRDFR-L-GRKFSAVVSMFSSVGYLKTTE----ELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp HHHC----TTCEEEECCTTTCC-C-SSCEEEEEECTTGGGGCCSHH----HHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred HHhC----CCCEEEECCHHHcc-c-CCCCcEEEEcCchHhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 8765 46899999999988 5 789999995 55888885432 26799999999999999999876543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=143.11 Aligned_cols=115 Identities=21% Similarity=0.285 Sum_probs=95.2
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+...+..++. ++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++.. . .+.++|+.+++
T Consensus 42 ~~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~---~--~~~~~d~~~~~- 109 (260)
T 2avn_A 42 RLIGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV---K--NVVEAKAEDLP- 109 (260)
T ss_dssp HHHHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC---S--CEEECCTTSCC-
T ss_pred HHHHHHHHHhcC-----CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC---C--CEEECcHHHCC-
Confidence 344555555552 578999999999999999999876 79999999999999987763 1 28999999998
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++++||+|++.+++.++..+ ...+++++.++|||||++++.+....
T Consensus 110 ~~~~~fD~v~~~~~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 110 FPSGAFEAVLALGDVLSYVEN------KDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp SCTTCEEEEEECSSHHHHCSC------HHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred CCCCCEEEEEEcchhhhcccc------HHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 889999999998877666432 57899999999999999999887643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=146.03 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccc-cCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVF-MDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~-~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.++++..... .++++.++|+.+++ + ++++||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-MDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-CCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc-cCCCCCcCEEEECc
Confidence 3678999999999999999988887689999999999999988875443 35899999999988 7 688999999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
+++++... ......+++++.++|||||++++.+.....+.
T Consensus 142 ~l~~~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 181 (298)
T 1ri5_A 142 SFHYAFST---SESLDIAQRNIARHLRPGGYFIMTVPSRDVIL 181 (298)
T ss_dssp CGGGGGSS---HHHHHHHHHHHHHTEEEEEEEEEEEECHHHHH
T ss_pred hhhhhcCC---HHHHHHHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence 99874221 11267999999999999999999987755443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=144.85 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=95.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++....+ .+++|.++|+.+++ +++++||+|++..
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-FDKGAVTASWNNE 193 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-CCCCCEeEEEECC
Confidence 57889999999999999999988 65 69999999999999988876544 36999999999998 8899999999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++++ + ...+++++.++|||||++++.+.....
T Consensus 194 ~l~~~-~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 194 STMYV-D-------LHDLFSEHSRFLKVGGRYVTITGCWNP 226 (312)
T ss_dssp CGGGS-C-------HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred chhhC-C-------HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence 99998 3 479999999999999999998865443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=132.94 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCC-CchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCG-NSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG-~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+||| +|.++..++..+..+|+|+|+|+.+++.++++....+.+++++++|+..+..+++++||+|+++..+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 468999999999 9999999998833479999999999999998876665689999999865543667899999988665
Q ss_pred cccccCc------------cchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEEEEEcCCCCCCCC
Q 004133 146 DALMEPE------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQKSSSEP 212 (772)
Q Consensus 146 ~~l~~~~------------~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~~~~~~~~~~ 212 (772)
......+ .+......+++++.++|||||+++++..........+...+ ..+|.+....... .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-----g 208 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKV-----G 208 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECC-----C
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecC-----C
Confidence 5432211 11222578999999999999999987655443333343333 3377776665533 1
Q ss_pred CcceEEEEEEecCC
Q 004133 213 SLQTFMVVADKENS 226 (772)
Q Consensus 213 ~l~~f~~~~~K~~~ 226 (772)
.....+...+|...
T Consensus 209 ~~~~~~l~f~~~~~ 222 (230)
T 3evz_A 209 TRWRHSLIFFKGIS 222 (230)
T ss_dssp C-CEEEEEEECCC-
T ss_pred CeEEEEEEEecccc
Confidence 23344555565433
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=141.72 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++......+++|.++|+.+++ + +++||+|++..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~v~~~~~ 98 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-L-NDKYDIAICHAF 98 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-C-SSCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-c-CCCeeEEEECCh
Confidence 56789999999999999999987 2 247999999999999999887665668999999999988 6 579999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++++.+ ...++++++++|||||++++.+..
T Consensus 99 l~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMTT-------PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCSS-------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCCC-------HHHHHHHHHHHcCCCCEEEEEecc
Confidence 999865 469999999999999999998755
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-13 Score=137.52 Aligned_cols=121 Identities=22% Similarity=0.299 Sum_probs=99.6
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
......+..++. ++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.++++......++++.++|+.+++
T Consensus 21 ~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~- 92 (243)
T 3d2l_A 21 PEWVAWVLEQVE-----PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE- 92 (243)
T ss_dssp HHHHHHHHHHSC-----TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC-
T ss_pred HHHHHHHHHHcC-----CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC-
Confidence 345555666664 4689999999999999999887 57999999999999999887655678999999999988
Q ss_pred ccCCCccEEEecc-cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 131 FMDETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 131 ~~~~sfDvVi~~~-~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
++ ++||+|++.. +++++.+.+ ....+++++.++|||||++++.......
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 142 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEA----DVKQTFDSAARLLTDGGKLLFDVHSPYK 142 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHH----HHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred CC-CCcCEEEEeCCchhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEcCCHHH
Confidence 55 8999999986 888875422 2678999999999999999987655433
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=129.51 Aligned_cols=119 Identities=13% Similarity=-0.015 Sum_probs=96.7
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l 128 (772)
..+...+...+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++....+ .+++++++|+.+.
T Consensus 26 ~~i~~~~l~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 102 (204)
T 3e05_A 26 QEVRAVTLSKLRL---QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG 102 (204)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT
T ss_pred HHHHHHHHHHcCC---CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 4555566666654 578999999999999999999985 3579999999999999988764433 5799999999775
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
. ...++||+|++...+. . ...+++++.++|||||++++......
T Consensus 103 ~-~~~~~~D~i~~~~~~~---~-------~~~~l~~~~~~LkpgG~l~~~~~~~~ 146 (204)
T 3e05_A 103 L-DDLPDPDRVFIGGSGG---M-------LEEIIDAVDRRLKSEGVIVLNAVTLD 146 (204)
T ss_dssp C-TTSCCCSEEEESCCTT---C-------HHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred h-hcCCCCCEEEECCCCc---C-------HHHHHHHHHHhcCCCeEEEEEecccc
Confidence 4 3447899999887765 1 57899999999999999999876644
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.9e-13 Score=141.11 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=95.4
Q ss_pred CCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEec
Q 004133 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
..++.+|||+|||+|.++..+++. | .+|+|+|+|+.+++.++++....+ .++++.++|+.++ +++||+|++.
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~fD~v~~~ 144 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DEPVDRIVSL 144 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CCCCSEEEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CCCccEEEEc
Confidence 367889999999999999999998 7 479999999999999998875543 2699999999765 5899999999
Q ss_pred ccccccccCcc--chHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 143 GGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 143 ~~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.+++++.+++. +......+++++.++|||||++++.++..+
T Consensus 145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 99999976421 112367999999999999999999887654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=144.41 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=102.3
Q ss_pred hhcccccCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEE
Q 004133 17 DLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITN 96 (772)
Q Consensus 17 ~lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~g 96 (772)
.+-.-...|....||+.+|.... .....--.........+..++... ..++.+|||+|||+|..+..++..+..+|+|
T Consensus 22 ~~~~~y~~~~~~~y~~~~y~~~~-~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~g 99 (289)
T 2g72_A 22 AVASAYQRFEPRAYLRNNYAPPR-GDLCNPNGVGPWKLRCLAQTFATG-EVSGRTLIDIGSGPTVYQLLSACSHFEDITM 99 (289)
T ss_dssp HHHHHGGGCCHHHHHHHHHSTTT-TCCSSTTSHHHHHHHHHHHHHHTS-CSCCSEEEEETCTTCCGGGTTGGGGCSEEEE
T ss_pred HHHHHHhccCHHHHHHHHhcCcc-cchhhhhHHHHHHHHHHHHHhCCC-CCCCCeEEEECCCcChHHHHhhccCCCeEEE
Confidence 34444445666688888886542 110000000111223344444320 1257899999999999665454443458999
Q ss_pred EeCCHHHHHHHHHHhccCCC-------------------------------CcEEEEeeccC-cc----cccCCCccEEE
Q 004133 97 VDFSKVVISDMLRRNVRDRS-------------------------------DMRWRVMDMTS-MQ----VFMDETFDVIL 140 (772)
Q Consensus 97 vDiS~~~I~~a~~~~~~~~~-------------------------------~v~f~~~D~~~-l~----~~~~~sfDvVi 140 (772)
+|+|+.|++.++++...... .++++++|+.+ ++ .+++++||+|+
T Consensus 100 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~ 179 (289)
T 2g72_A 100 TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALV 179 (289)
T ss_dssp ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEE
T ss_pred eCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEE
Confidence 99999999999876532110 14577789988 54 13456799999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+..+++++.... .....+|++++|+|||||+|++..
T Consensus 180 ~~~~l~~~~~~~---~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 180 SAFCLEAVSPDL---ASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp EESCHHHHCSSH---HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ehhhhhhhcCCH---HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999964420 116799999999999999999874
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=140.50 Aligned_cols=114 Identities=18% Similarity=0.087 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-cccC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-VFMD 133 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-~~~~ 133 (772)
..+...+. .++.+|||||||+|..+..+++.+..++|+||+|+.|++.|+++......++.++.+|+.++. .+++
T Consensus 51 ~~~a~~~~----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~ 126 (236)
T 3orh_A 51 HALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD 126 (236)
T ss_dssp HHHHHHHT----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT
T ss_pred HHHHHhhc----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc
Confidence 33444554 378899999999999999998875557999999999999999988777778999999987642 2778
Q ss_pred CCccEEEeccc-----ccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 134 ETFDVILDKGG-----LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 134 ~sfDvVi~~~~-----l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++||.|+...+ +.++.+ ...++++++|+|||||+|++..
T Consensus 127 ~~FD~i~~D~~~~~~~~~~~~~-------~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 127 GHFDGILYDTYPLSEETWHTHQ-------FNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp TCEEEEEECCCCCBGGGTTTHH-------HHHHHHTHHHHEEEEEEEEECC
T ss_pred cCCceEEEeeeecccchhhhcc-------hhhhhhhhhheeCCCCEEEEEe
Confidence 99999974322 223222 6789999999999999998654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=129.95 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=94.6
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-C-CcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~-~v~f~~~D~~~l 128 (772)
..+...+...+.. .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+ . +++++++|+.+.
T Consensus 41 ~~~~~~~l~~l~~---~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 41 SPMRALTLAALAP---RRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHHHHHHHHhcCC---CCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 3555556666665 5788999999999999999999854 79999999999999988875443 3 699999999984
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
. ...+.||+|++.+.+ . .. +++++.++|||||++++........
T Consensus 117 ~-~~~~~~D~v~~~~~~----~-------~~-~l~~~~~~LkpgG~lv~~~~~~~~~ 160 (204)
T 3njr_A 117 L-ADLPLPEAVFIGGGG----S-------QA-LYDRLWEWLAPGTRIVANAVTLESE 160 (204)
T ss_dssp G-TTSCCCSEEEECSCC----C-------HH-HHHHHHHHSCTTCEEEEEECSHHHH
T ss_pred c-ccCCCCCEEEECCcc----c-------HH-HHHHHHHhcCCCcEEEEEecCcccH
Confidence 3 244689999987644 1 45 9999999999999999988775543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=135.68 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.|++.++++ .+++++.++|+.+++ ++++||+|++..++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~----~~~~~~~~~d~~~~~--~~~~fD~v~~~~~l 105 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR----LPNTNFGKADLATWK--PAQKADLLYANAVF 105 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----STTSEEEECCTTTCC--CSSCEEEEEEESCG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----CCCcEEEECChhhcC--ccCCcCEEEEeCch
Confidence 57789999999999999999887 234699999999999999776 357999999999987 67899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++.+ ...++++++++|||||++++.+..
T Consensus 106 ~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 106 QWVPD-------HLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp GGSTT-------HHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hhCCC-------HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99855 578999999999999999998754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=137.16 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=94.8
Q ss_pred HhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCC
Q 004133 59 SLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 59 ~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~s 135 (772)
.++......++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++....+ .++++.++|+.+++ ++
T Consensus 55 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~ 129 (287)
T 1kpg_A 55 LALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----EP 129 (287)
T ss_dssp HHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----CC
T ss_pred HHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----CC
Confidence 3344333367889999999999999999854 76 79999999999999988875433 47999999997654 78
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
||+|++.++++++..++ ...+++++.++|||||++++.++...
T Consensus 130 fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHER-----YDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp CSEEEEESCGGGTCTTT-----HHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred eeEEEEeCchhhcChHH-----HHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 99999999999995433 67999999999999999999886644
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.4e-13 Score=133.71 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..++.. +++|+|+.+++.++++ ++++.++|+.+++ +++++||+|++..++++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLP-LKDESFDFALMVTTICF 114 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCC-SCTTCEEEEEEESCGGG
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCC-CCCCCeeEEEEcchHhh
Confidence 4789999999999999988654 9999999999988765 6899999999998 88899999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+.+ ...+++++.++|+|||++++.+.....
T Consensus 115 ~~~-------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 144 (219)
T 1vlm_A 115 VDD-------PERALKEAYRILKKGGYLIVGIVDRES 144 (219)
T ss_dssp SSC-------HHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ccC-------HHHHHHHHHHHcCCCcEEEEEEeCCcc
Confidence 855 568999999999999999998866543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-13 Score=139.03 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=87.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc---
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV--- 130 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~--- 130 (772)
...+...+.. .++.+|||+|||+|.++..|++.|. +|+++|+|+.|++.++++.... ++.+|+.+++.
T Consensus 34 ~~~il~~l~l---~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 34 RENDIFLENI---VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-----CVTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHTTTC---CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSCCC
T ss_pred HHHHHHhcCC---CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-----cceeeeeecccccc
Confidence 3345555544 5788999999999999999999986 7999999999999998887433 34455554430
Q ss_pred -ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 131 -FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 131 -~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..+++||+|++..+++++..++ ...+++++.++| |||++++..
T Consensus 105 ~~~~~~fD~Vv~~~~l~~~~~~~-----~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLINRFTTEE-----ARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp GGGTTCCSEEEEESCGGGSCHHH-----HHHHHHHHHHHH-TTSEEEEEE
T ss_pred cccCCCccEEEEhhhhHhCCHHH-----HHHHHHHHHHhC-cCcEEEEEe
Confidence 1257999999999999885533 678999999999 999998764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=138.58 Aligned_cols=116 Identities=10% Similarity=0.138 Sum_probs=96.3
Q ss_pred HhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCC
Q 004133 59 SLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 59 ~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~s 135 (772)
..+......++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++....+ .++++.++|+.+++ ++
T Consensus 81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~ 155 (318)
T 2fk8_A 81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----EP 155 (318)
T ss_dssp HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC----CC
T ss_pred HHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC----CC
Confidence 3343333367889999999999999999987 76 79999999999999988875443 46999999997764 78
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
||+|++..+++++..++ ...+++++.++|||||++++.++....
T Consensus 156 fD~v~~~~~l~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHEN-----YDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp CSEEEEESCGGGTCGGG-----HHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred cCEEEEeChHHhcCHHH-----HHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 99999999999985432 679999999999999999998876543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-13 Score=133.51 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=87.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc---ccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---QVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l---~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++ .++.+.++|+.++ +...+++||+|++..
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECc
Confidence 3568999999999999999999876 799999999999999765 4678999998887 412344599999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++ ..+ ...++++++++|||||++++.++....
T Consensus 125 ~l~-~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 125 ALL-HQD-------IIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp CCC-SSC-------CHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred hhh-hhh-------HHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 998 333 468999999999999999999876543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-13 Score=130.83 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=90.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++..... .+++++++|+.++. .+++++||+|++...+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 678999999999999998888887789999999999999988875443 47999999998864 1347899999998776
Q ss_pred cccccCccchHHHHHHHHHHHh--ccccCeEEEEEEcCc
Q 004133 146 DALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLAE 182 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~~ii~~~~~ 182 (772)
++... ....+++++.+ +|+|||++++.+...
T Consensus 124 ~~~~~------~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 124 NVDSA------DVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TSCHH------HHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred Ccchh------hHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 65421 16789999999 999999999987554
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-13 Score=130.01 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=96.2
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l 128 (772)
..+...+...+.. .++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++..... .++++.++|+.+
T Consensus 19 ~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~- 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE- 93 (192)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-
Confidence 3556666666654 578899999999999999999887 689999999999999988765443 479999999987
Q ss_pred ccccC-CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 129 QVFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 129 ~~~~~-~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
. +++ ++||+|++.+++++ ...+++++.++|+|||++++.+.....
T Consensus 94 ~-~~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~l~~gG~l~~~~~~~~~ 139 (192)
T 1l3i_A 94 A-LCKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILLET 139 (192)
T ss_dssp H-HTTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred h-cccCCCCCEEEECCchHH----------HHHHHHHHHHhcCCCcEEEEEecCcch
Confidence 2 333 68999998877643 468999999999999999998876544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-13 Score=147.61 Aligned_cols=115 Identities=19% Similarity=0.184 Sum_probs=92.4
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQV 130 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~ 130 (772)
....+.+.+.. .++.+|||+|||+|.++..+++.|..+|+|+|+|+ |++.|+++....+ .+++++++|+.+++
T Consensus 52 ~~~~i~~~~~~---~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~- 126 (340)
T 2fyt_A 52 YRDFIYQNPHI---FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH- 126 (340)
T ss_dssp HHHHHHHCGGG---TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-
T ss_pred HHHHHHhhhhh---cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-
Confidence 33445554433 46789999999999999999998877899999997 9999988775443 57999999999998
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+++++||+|++..+...+.... ....++.++.++|||||+++
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~~~~----~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLLFES----MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCSCEEEEEECCCBTTBTTTC----HHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcEEEEEEcCchhhccCHH----HHHHHHHHHHhhcCCCcEEE
Confidence 8889999999977544443322 16789999999999999987
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=131.48 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=85.9
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc--
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-- 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l-- 128 (772)
.+...+...+. ....++.+|||+|||+|.++..+++. |..+|+|+|+|+.|++.+.+++.. ..++.++++|+.+.
T Consensus 42 ~l~~~~~~~l~-~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-~~~v~~~~~d~~~~~~ 119 (210)
T 1nt2_A 42 KLAAMILKGHR-LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFDASKPWK 119 (210)
T ss_dssp HHHHHHHTSCC-CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSCTTCGGG
T ss_pred HHHHHHHhhcc-cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-CCCeEEEEcCCCCchh
Confidence 44444444443 22357889999999999999999886 334799999999999888766533 35789999999874
Q ss_pred --ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 129 --QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 129 --~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+ +. ++||+|++.. ..++ ....++++++++|||||++++..
T Consensus 120 ~~~-~~-~~fD~V~~~~-----~~~~----~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 120 YSG-IV-EKVDLIYQDI-----AQKN----QIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp TTT-TC-CCEEEEEECC-----CSTT----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcc-cc-cceeEEEEec-----cChh----HHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 33 7999999862 1111 14566999999999999999884
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-13 Score=141.53 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc--------CCCCcEEEEeeccCcc---ccc--CC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------DRSDMRWRVMDMTSMQ---VFM--DE 134 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~--------~~~~v~f~~~D~~~l~---~~~--~~ 134 (772)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.++++... ...+++|+++|+.+++ .++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5789999999999999999887666899999999999999887643 2236899999999874 133 45
Q ss_pred CccEEEeccccccc-ccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 135 TFDVILDKGGLDAL-MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 135 sfDvVi~~~~l~~l-~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
+||+|++..+++++ .+.+ ....+++++.++|||||++++.+.....+..
T Consensus 114 ~fD~V~~~~~l~~~~~~~~----~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~ 163 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYE----QADMMLRNACERLSPGGYFIGTTPNSFELIR 163 (313)
T ss_dssp CEEEEEEETCGGGGGGSHH----HHHHHHHHHHTTEEEEEEEEEEEECHHHHHH
T ss_pred CEEEEEEecchhhccCCHH----HHHHHHHHHHHHhCCCcEEEEecCChHHHHH
Confidence 99999999999988 3311 2579999999999999999999987655443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.2e-12 Score=132.34 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=99.9
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls-~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~ 122 (772)
+|..|..+...-..++.. .++.+|||+|||+|.++ ..++.. |. +|+|+|+|+.|++.|+++....+ .+++|++
T Consensus 103 y~~~~~~l~~~E~~la~l---~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~ 178 (298)
T 3fpf_A 103 FYPRYLELLKNEAALGRF---RRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVIT 178 (298)
T ss_dssp THHHHHHHHHHHHHHTTC---CTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CcccHHHHHHHHHHHcCC---CCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 444444444333334443 68999999999999876 445553 54 79999999999999998875433 5899999
Q ss_pred eeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhccc----ccccCCcE
Q 004133 123 MDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF----PKFRFGWK 198 (772)
Q Consensus 123 ~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~----~~~~~~w~ 198 (772)
+|+.+++ +++||+|+.... . ++ ..++++++.|+|||||++++..... ++..+. .....+|.
T Consensus 179 gDa~~l~---d~~FDvV~~~a~---~--~d-----~~~~l~el~r~LkPGG~Lvv~~~~~--~r~~l~~~v~~~~~~gf~ 243 (298)
T 3fpf_A 179 GDETVID---GLEFDVLMVAAL---A--EP-----KRRVFRNIHRYVDTETRIIYRTYTG--MRAILYAPVSDDDITGFR 243 (298)
T ss_dssp SCGGGGG---GCCCSEEEECTT---C--SC-----HHHHHHHHHHHCCTTCEEEEEECCG--GGGGSSCCCCTGGGTTEE
T ss_pred CchhhCC---CCCcCEEEECCC---c--cC-----HHHHHHHHHHHcCCCcEEEEEcCcc--hhhhccccCChhhhhhhh
Confidence 9998865 689999997554 1 12 5799999999999999999987532 122111 12233677
Q ss_pred EEEEEcCC
Q 004133 199 MSVHAIPQ 206 (772)
Q Consensus 199 ~~~~~~~~ 206 (772)
......+.
T Consensus 244 ~~~~~~p~ 251 (298)
T 3fpf_A 244 RAGVVLPS 251 (298)
T ss_dssp EEEEECCC
T ss_pred heeEECCC
Confidence 77666554
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=145.35 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC---------CCCcEEEEeeccCc------c
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---------RSDMRWRVMDMTSM------Q 129 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~---------~~~v~f~~~D~~~l------~ 129 (772)
.++.+|||+|||+|.++..+++. ...+|+|+|+|+.+++.++++.... .++++|+++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46789999999999999999886 2347999999999999998775321 26899999999997 7
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++++||+|++..+++++.+ ...++++++++|||||++++.++.
T Consensus 162 -~~~~~fD~V~~~~~l~~~~d-------~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 162 -VPDSSVDIVISNCVCNLSTN-------KLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp -CCTTCEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -CCCCCEEEEEEccchhcCCC-------HHHHHHHHHHHcCCCCEEEEEEec
Confidence 88999999999999999865 579999999999999999998654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=133.22 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=92.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
+.+...+...+.. .++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++..... ++++.++|+.+..
T Consensus 56 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~~- 129 (231)
T 1vbf_A 56 LNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLGY- 129 (231)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGCC-
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCccccc-
Confidence 3455556666654 578899999999999999999987 589999999999999988875444 8999999998843
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+++||+|++..+++++. +++.++|+|||++++....
T Consensus 130 ~~~~~fD~v~~~~~~~~~~-------------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 130 EEEKPYDRVVVWATAPTLL-------------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEEECS
T ss_pred ccCCCccEEEECCcHHHHH-------------HHHHHHcCCCcEEEEEEcC
Confidence 3568999999999988763 3688999999999998754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.6e-13 Score=141.20 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCchhHHHHH--HcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLY--DAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La--~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
.++.+|||+|||+|.++..++ ..+..+|+|+|+|+.+++.++++....+. +++|+++|+.+++ ++ ++||+|++.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~fD~v~~~ 194 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-TR-EGYDLLTSN 194 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-CC-SCEEEEECC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-cc-CCeEEEEEC
Confidence 468899999999999999985 23345799999999999999988755443 4999999999998 77 999999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++++++.+++ ....+++++.++|||||++++.++..+
T Consensus 195 ~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 195 GLNIYEPDDA----RVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp SSGGGCCCHH----HHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred ChhhhcCCHH----HHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 9999986643 145689999999999999999876654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=129.93 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=93.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~ 129 (772)
+.....+...+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++....+ .++++.++|+.+..
T Consensus 63 ~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 63 PYMVARMTELLEL---TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 4555566666654 678999999999999999999985 479999999999999988875433 47999999999876
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+++||+|++..+++++.. ++.++|||||++++..-.
T Consensus 139 -~~~~~~D~i~~~~~~~~~~~-------------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 -QARAPFDAIIVTAAPPEIPT-------------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp -GGGCCEEEEEESSBCSSCCT-------------HHHHTEEEEEEEEEEECS
T ss_pred -ccCCCccEEEEccchhhhhH-------------HHHHhcccCcEEEEEEcC
Confidence 56789999999999888743 578999999999987654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.3e-12 Score=123.82 Aligned_cols=133 Identities=10% Similarity=0.129 Sum_probs=102.0
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~ 129 (772)
..+...+...+.. .++.+|||+|||+|.++..++. +..+++++|+|+.+++.++++....+ .++++.++|+.+ +
T Consensus 21 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~ 95 (183)
T 2yxd_A 21 EEIRAVSIGKLNL---NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V 95 (183)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H
T ss_pred HHHHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c
Confidence 3555666666654 5778999999999999999988 45589999999999999988875444 479999999988 5
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEEEEE
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 203 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~ 203 (772)
+++++||+|++..+ .. ...+++++.++ |||++++.+.......+ +...+ ..+|.+....
T Consensus 96 -~~~~~~D~i~~~~~----~~-------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~-~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 96 -LDKLEFNKAFIGGT----KN-------IEKIIEILDKK--KINHIVANTIVLENAAK-IINEFESRGYNVDAVN 155 (183)
T ss_dssp -GGGCCCSEEEECSC----SC-------HHHHHHHHHHT--TCCEEEEEESCHHHHHH-HHHHHHHTTCEEEEEE
T ss_pred -ccCCCCcEEEECCc----cc-------HHHHHHHHhhC--CCCEEEEEecccccHHH-HHHHHHHcCCeEEEEE
Confidence 67789999999877 11 57899999999 99999999876554433 22222 2356666543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-13 Score=144.76 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+ |++.|+++....+. +++++++|+.+++ +++++||+|++..+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWM 142 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCC
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccc
Confidence 35789999999999999999999887899999995 99999887755443 4999999999998 88899999999876
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
.+++..... ...++.++.++|||||+++
T Consensus 143 ~~~l~~~~~----~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 143 GYCLFYESM----LNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp BBTBTBTCC----HHHHHHHHHHHEEEEEEEE
T ss_pred cccccCchh----HHHHHHHHHHhCCCCCEEc
Confidence 665544332 6789999999999999987
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-12 Score=123.66 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=91.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l 128 (772)
.+...+...+.. .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++....+. ++ ++++|+.+
T Consensus 12 ~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~- 86 (178)
T 3hm2_A 12 HVRALAISALAP---KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR- 86 (178)
T ss_dssp HHHHHHHHHHCC---CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-
T ss_pred HHHHHHHHHhcc---cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-
Confidence 445555666654 57789999999999999999887 345799999999999999887654432 57 88888865
Q ss_pred ccccC--CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 129 QVFMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 129 ~~~~~--~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
. +++ ++||+|++.+.+++ ..+++++.++|||||++++.++..+.
T Consensus 87 ~-~~~~~~~~D~i~~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~~~~~~~ 132 (178)
T 3hm2_A 87 A-FDDVPDNPDVIFIGGGLTA-----------PGVFAAAWKRLPVGGRLVANAVTVES 132 (178)
T ss_dssp G-GGGCCSCCSEEEECC-TTC-----------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred h-hhccCCCCCEEEECCcccH-----------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence 2 344 89999999888876 15899999999999999998876544
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-12 Score=129.85 Aligned_cols=124 Identities=21% Similarity=0.242 Sum_probs=99.1
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|......+...+..-++....+|+++|||+|||+|.++..+++. |. ..|+++|+|+.|++.+++++ ...+++..+..
T Consensus 55 w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a-~~~~ni~~V~~ 133 (233)
T 4df3_A 55 WNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVV-RDRRNIFPILG 133 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHS-TTCTTEEEEES
T ss_pred ECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh-HhhcCeeEEEE
Confidence 76666678887877777666789999999999999999999987 43 57999999999999998776 44568999999
Q ss_pred eccCcc--cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 124 DMTSMQ--VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 124 D~~~l~--~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+.+.. .+..+++|+|++.... . + ....++.+++++|||||++++..
T Consensus 134 d~~~p~~~~~~~~~vDvVf~d~~~--~---~----~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 134 DARFPEKYRHLVEGVDGLYADVAQ--P---E----QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCCC--T---T----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eccCccccccccceEEEEEEeccC--C---h----hHHHHHHHHHHhccCCCEEEEEE
Confidence 987643 1566889998853221 1 1 15689999999999999998864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-12 Score=128.32 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++.|..+|+++|+|+.+++.++++...... ++++.++|+.+.. +++||+|++...+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~fD~i~~~~~~ 135 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV---DGKFDLIVANILA 135 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---CSCEEEEEEESCH
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---CCCceEEEECCcH
Confidence 36789999999999999999988777899999999999999888754443 4999999997743 5899999998766
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++ ...+++++.++|+|||++++.++...
T Consensus 136 ~~----------~~~~l~~~~~~L~~gG~l~~~~~~~~ 163 (205)
T 3grz_A 136 EI----------LLDLIPQLDSHLNEDGQVIFSGIDYL 163 (205)
T ss_dssp HH----------HHHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred HH----------HHHHHHHHHHhcCCCCEEEEEecCcc
Confidence 54 35789999999999999999876644
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=139.04 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=87.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-------------------------------
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR------------------------------- 115 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~------------------------------- 115 (772)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.||+.|+++.....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5789999999999999999987 44589999999999999987753221
Q ss_pred ----------------------------CCcEEEEeeccCcc----cccCCCccEEEecccccccccCccchHHHHHHHH
Q 004133 116 ----------------------------SDMRWRVMDMTSMQ----VFMDETFDVILDKGGLDALMEPELGHKLGNQYLS 163 (772)
Q Consensus 116 ----------------------------~~v~f~~~D~~~l~----~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ 163 (772)
.+++|.++|+.+.. .+.+++||+|++..++.|+.-. .++....++|+
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~-~~~~~~~~~l~ 204 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLN-WGDEGLKRMFR 204 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHH-HHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhc-CCHHHHHHHHH
Confidence 37999999998643 1467899999999999777410 00112789999
Q ss_pred HHHhccccCeEEEEEE
Q 004133 164 EVKRLLKSGGKFVCLT 179 (772)
Q Consensus 164 ei~rvLkpGG~~ii~~ 179 (772)
+++++|||||++++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999999864
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=136.94 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCchhHHHH----HHcC-CCe--EEEEeCCHHHHHHHHHHhccC--CCCcEE--EEeeccCcc-----c
Q 004133 67 SPPPQILVPGCGNSRLSEHL----YDAG-FHG--ITNVDFSKVVISDMLRRNVRD--RSDMRW--RVMDMTSMQ-----V 130 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~L----a~~g-~~~--V~gvDiS~~~I~~a~~~~~~~--~~~v~f--~~~D~~~l~-----~ 130 (772)
.++.+|||+|||+|.++..+ ...+ ... ++++|+|+.|++.++++.... ..++.+ .++++.+++ .
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45679999999999866533 3322 223 499999999999998887432 234444 455555432 1
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++++||+|++..+++++.+ ..++|++++|+|||||++++.....
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d-------~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD-------IPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC-------HHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cCCCceeEEEEeeeeeecCC-------HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 45789999999999999976 5689999999999999999987654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=135.22 Aligned_cols=119 Identities=12% Similarity=0.062 Sum_probs=96.0
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~ 123 (772)
|+.........+..++ .++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.|++++...+. +++|+++
T Consensus 108 f~~~~~~~~~~l~~~~-----~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~ 182 (278)
T 2frn_A 108 FSPANVKERVRMAKVA-----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182 (278)
T ss_dssp CCGGGHHHHHHHHHHC-----CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EcCCcHHHHHHHHHhC-----CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC
Confidence 5555445555666665 35889999999999999999998765799999999999999887754432 4899999
Q ss_pred eccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 124 DMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 124 D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+.++. . +++||+|++..... ...+++++.++|||||++++.++..
T Consensus 183 D~~~~~-~-~~~fD~Vi~~~p~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 183 DNRDFP-G-ENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp CTTTCC-C-CSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CHHHhc-c-cCCccEEEECCchh-----------HHHHHHHHHHHCCCCeEEEEEEeec
Confidence 999987 4 78999998853311 2478899999999999999988875
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.5e-12 Score=137.94 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=90.7
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc-------c---CCCCcEEEEee
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-------R---DRSDMRWRVMD 124 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~-------~---~~~~v~f~~~D 124 (772)
.+...+.. .++.+|||||||+|.++..++.. |...|+|||+|+.+++.|+++.. . ...+++|+++|
T Consensus 164 ~il~~l~l---~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 164 QMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHCC---CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34444443 68899999999999999999865 66679999999999998876431 1 12579999999
Q ss_pred ccCcccccC--CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 125 MTSMQVFMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 125 ~~~l~~~~~--~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+.+++ +.+ ..||+|+++.+++. ++ ....|.+++|+|||||+|++.....+
T Consensus 241 ~~~lp-~~d~~~~aDVVf~Nn~~F~---pd-----l~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 241 FLSEE-WRERIANTSVIFVNNFAFG---PE-----VDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp TTSHH-HHHHHHTCSEEEECCTTCC---HH-----HHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred ccCCc-cccccCCccEEEEcccccC---ch-----HHHHHHHHHHcCCCCcEEEEeecccC
Confidence 99988 654 57999999876532 22 57888999999999999998865444
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=134.66 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCch----hHHHHHHc-C----CCeEEEEe
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSR----LSEHLYDA-G----FHGITNVD 98 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~----ls~~La~~-g----~~~V~gvD 98 (772)
.+.|+.++..-. -..-+||.+...+...-...+.. .+..+|||+|||||. ++..|++. + ..+|+|+|
T Consensus 69 ~~e~~~l~~~lt-~~~t~FfRd~~~f~~l~~~llp~---~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atD 144 (274)
T 1af7_A 69 SAEWQAFINALT-TNLTAFFREAHHFPILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASD 144 (274)
T ss_dssp CTHHHHHHHHHC-CCCCCTTTTTTHHHHHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEE
T ss_pred HHHHHHHHHHHh-hcCccccCChHHHHHHHHHccCC---CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 345666555431 12223555444443332233432 135799999999998 55556654 3 12799999
Q ss_pred CCHHHHHHHHHHhcc-----------------------C---------CCCcEEEEeeccCccccc-CCCccEEEecccc
Q 004133 99 FSKVVISDMLRRNVR-----------------------D---------RSDMRWRVMDMTSMQVFM-DETFDVILDKGGL 145 (772)
Q Consensus 99 iS~~~I~~a~~~~~~-----------------------~---------~~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l 145 (772)
+|+.||+.|++..-. . ..++.|.++|+.+.+ ++ .+.||+|++.+++
T Consensus 145 is~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~-~~~~~~fDlI~crnvl 223 (274)
T 1af7_A 145 IDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQ-YNVPGPFDAIFCRNVM 223 (274)
T ss_dssp SCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSS-CCCCCCEEEEEECSSG
T ss_pred CCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCC-CCcCCCeeEEEECCch
Confidence 999999999875310 0 026899999999976 65 5789999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
.|+.++. ..+++++++++|+|||++++.
T Consensus 224 iyf~~~~-----~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 224 IYFDKTT-----QEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp GGSCHHH-----HHHHHHHHGGGEEEEEEEEEC
T ss_pred HhCCHHH-----HHHHHHHHHHHhCCCcEEEEE
Confidence 9985532 689999999999999999873
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=129.17 Aligned_cols=124 Identities=12% Similarity=0.071 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEEeeccCcc-cccCCC-ccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ-VFMDET-FDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~~D~~~l~-~~~~~s-fDvVi~~ 142 (772)
++.+|||+|||+|.++..++..|..+|+++|+|+.|++.|++++...+ .+++++++|+.++. .+.+++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 468999999999999999888877789999999999999988876554 47999999998864 123678 9999987
Q ss_pred ccccccccCccchHHHHHHHHHH--HhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEV--KRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 205 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei--~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~ 205 (772)
..++ . .. ...+++.+ .++|+|||++++.+.... +.....+|.+.....+
T Consensus 133 ~~~~-~--~~-----~~~~l~~~~~~~~LkpgG~l~i~~~~~~------~~~~~~~~~~~~~~~y 183 (201)
T 2ift_A 133 PPFH-F--NL-----AEQAISLLCENNWLKPNALIYVETEKDK------PLITPENWTLLKEKTT 183 (201)
T ss_dssp CCSS-S--CH-----HHHHHHHHHHTTCEEEEEEEEEEEESSS------CCCCCTTEEEEEEEEE
T ss_pred CCCC-C--cc-----HHHHHHHHHhcCccCCCcEEEEEECCCC------CccccchhHHHHHHhc
Confidence 7743 1 11 56788888 778999999998876543 1122345765544433
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.1e-12 Score=123.29 Aligned_cols=120 Identities=19% Similarity=0.213 Sum_probs=97.2
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CC--cEEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SD--MRWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~--v~f~~~D~~~l 128 (772)
.....+...+.. .++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++..... .+ +++.++|+.+.
T Consensus 39 ~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 114 (194)
T 1dus_A 39 KGTKILVENVVV---DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN 114 (194)
T ss_dssp HHHHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred hHHHHHHHHccc---CCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc
Confidence 455556666654 578899999999999999999884 479999999999999988875443 33 99999999884
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++++||+|++...+++... ....+++++.++|+|||++++.+....
T Consensus 115 --~~~~~~D~v~~~~~~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 115 --VKDRKYNKIITNPPIRAGKE------VLHRIIEEGKELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp --CTTSCEEEEEECCCSTTCHH------HHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred --cccCCceEEEECCCcccchh------HHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 46789999999887765211 267899999999999999999987754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.34 E-value=7.1e-12 Score=128.45 Aligned_cols=106 Identities=16% Similarity=0.255 Sum_probs=85.0
Q ss_pred hcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC----cccccCCC
Q 004133 61 IGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS----MQVFMDET 135 (772)
Q Consensus 61 l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~----l~~~~~~s 135 (772)
+......++.+|||+|||+|.++..+++. |..+|+|+|+|+.+++.+++++... .++.++++|+.+ ++ +. ++
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~-~~-~~ 143 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYAN-IV-EK 143 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTT-TS-CC
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCcccccc-cC-cc
Confidence 43333357889999999999999999987 5468999999999999998876443 789999999998 66 55 78
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
||+|+. .+..+. ....+++++.++|||||++++.
T Consensus 144 ~D~v~~-----~~~~~~----~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 144 VDVIYE-----DVAQPN----QAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEEE-----CCCSTT----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEE-----ecCChh----HHHHHHHHHHHhCCCCcEEEEE
Confidence 999982 222221 2467899999999999999986
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=125.21 Aligned_cols=125 Identities=18% Similarity=0.280 Sum_probs=92.1
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|..........+...+......++.+|||+|||+|.++..+++. | ..+|+|+|+|+.+++.+.+.+... .++++.++
T Consensus 55 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~ 133 (233)
T 2ipx_A 55 WNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIE 133 (233)
T ss_dssp CCTTTCHHHHHHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECS
T ss_pred ecccchhHHHHHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEc
Confidence 44333344434444344333467889999999999999999987 3 357999999999988887766443 68999999
Q ss_pred eccC---cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 124 DMTS---MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 124 D~~~---l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|+.+ ++ +.+++||+|++... .++ ....++.++.++|||||++++....
T Consensus 134 d~~~~~~~~-~~~~~~D~V~~~~~-----~~~----~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 134 DARHPHKYR-MLIAMVDVIFADVA-----QPD----QTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp CTTCGGGGG-GGCCCEEEEEECCC-----CTT----HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccCChhhhc-ccCCcEEEEEEcCC-----Ccc----HHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 9988 44 56789999998543 111 1456789999999999999985443
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=129.63 Aligned_cols=91 Identities=13% Similarity=0.207 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec-cCccccc-CCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM-TSMQVFM-DETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~-~~l~~~~-~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++ .++++|+++|+ ..++ ++ +++||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~d~~~~~~-~~~~~~fD~v~~~~- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN----APHADVYEWNGKGELP-AGLGAPFGLIVSRR- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH----CTTSEEEECCSCSSCC-TTCCCCEEEEEEES-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh----CCCceEEEcchhhccC-CcCCCCEEEEEeCC-
Confidence 3678999999999999999999876 799999999999999776 45799999999 5677 77 89999999861
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+ ...+++++.++|||||+++
T Consensus 120 -----~-------~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 -----G-------PTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -----C-------CSGGGGGHHHHEEEEEEEE
T ss_pred -----C-------HHHHHHHHHHHcCCCcEEE
Confidence 2 2478899999999999999
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-13 Score=140.83 Aligned_cols=141 Identities=9% Similarity=0.099 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHhcCCC-Ccc-----ccccc-hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEe
Q 004133 26 TSKENWDKFFTIRGIG-DSF-----EWYAE-WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVD 98 (772)
Q Consensus 26 ~~~~yWd~~y~~~~~~-~~~-----eW~~~-~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvD 98 (772)
....||+..+.....- ..+ .|+.. ...+...+...+... .++.+|||+|||+|.++..+++.| .+|+|+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD 107 (241)
T 3gdh_A 31 ELAKYWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQS--FKCDVVVDAFCGVGGNTIQFALTG-MRVIAID 107 (241)
T ss_dssp GGHHHHHTHHHHCTTGGGTCCCCHHHHHHCCCHHHHHHHHHHHHHH--SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEE
T ss_pred HHHHHHHhhhhhHhhccCCceecccceeecCHHHHHHHHHHHhhhc--cCCCEEEECccccCHHHHHHHHcC-CEEEEEE
Confidence 4578999887655210 011 13222 122233444333210 267899999999999999999987 5799999
Q ss_pred CCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 99 FSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 99 iS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+|+.+++.+++++...+ .+++|+++|+.+++ ++++||+|++...+++.... ...+.+++++|+|||+++
T Consensus 108 ~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~~~~~~~-------~~~~~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 108 IDPVKIALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSPPWGGPDYA-------TAETFDIRTMMSPDGFEI 178 (241)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECCCCSSGGGG-------GSSSBCTTTSCSSCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECCCcCCcchh-------hhHHHHHHhhcCCcceeH
Confidence 99999999988876555 37999999999986 56899999999988886553 236678999999999965
Q ss_pred EE
Q 004133 177 CL 178 (772)
Q Consensus 177 i~ 178 (772)
+.
T Consensus 179 ~~ 180 (241)
T 3gdh_A 179 FR 180 (241)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-12 Score=125.27 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=103.9
Q ss_pred cchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecc
Q 004133 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (772)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~ 126 (772)
..++.+...+..++. +..+|||+|||+|.++..++.. +..+|+++|+|+.|++.+++++...+...++...|..
T Consensus 34 p~ld~fY~~~~~~l~-----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~ 108 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIK-----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE 108 (200)
T ss_dssp GGHHHHHHHHHHHSC-----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH
T ss_pred HhHHHHHHHHHhhcC-----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccc
Confidence 334455555666663 5789999999999999999776 3348999999999999999988766655455557776
Q ss_pred CcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE---cCchh--hhh---cccccc--cCC
Q 004133 127 SMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT---LAESH--VLG---LLFPKF--RFG 196 (772)
Q Consensus 127 ~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~---~~~~~--~~~---~l~~~~--~~~ 196 (772)
... +.++||+|+...++|++ ++ .+..+..+++.|+|||.||-.. ++.+. +.. ..++.. ...
T Consensus 109 ~~~--~~~~~DvVLa~k~LHlL-~~------~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~ 179 (200)
T 3fzg_A 109 SDV--YKGTYDVVFLLKMLPVL-KQ------QDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWI 179 (200)
T ss_dssp HHH--TTSEEEEEEEETCHHHH-HH------TTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTS
T ss_pred ccC--CCCCcChhhHhhHHHhh-hh------hHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcc
Confidence 543 67899999999999999 43 2456669999999999998765 22221 111 222222 236
Q ss_pred cEEEEEEcCC
Q 004133 197 WKMSVHAIPQ 206 (772)
Q Consensus 197 w~~~~~~~~~ 206 (772)
|.+.-.++.+
T Consensus 180 ~~~~~~~~~n 189 (200)
T 3fzg_A 180 KILDSKVIGN 189 (200)
T ss_dssp CEEEEEEETT
T ss_pred eeeeeeeeCc
Confidence 7777777655
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-12 Score=129.00 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=91.6
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC--cccccC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQVFMD 133 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~--l~~~~~ 133 (772)
.+.+.+. .++.+|||+|||+|.++..++..| .+++++|+|+.+++.++++. .++.++|+.+ .+ +++
T Consensus 24 ~l~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~-~~~ 91 (230)
T 3cc8_A 24 NLLKHIK----KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMP-YEE 91 (230)
T ss_dssp HHHTTCC----TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCC-SCT
T ss_pred HHHHHhc----cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCC-CCC
Confidence 3445543 367899999999999999999887 58999999999999886554 3789999987 55 778
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++||+|++..+++++.+ ...+++++.++|+|||++++.+....
T Consensus 92 ~~fD~v~~~~~l~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 92 EQFDCVIFGDVLEHLFD-------PWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp TCEEEEEEESCGGGSSC-------HHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred CccCEEEECChhhhcCC-------HHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 89999999999999865 46899999999999999999876543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-12 Score=147.50 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=96.9
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhcc-------CCCCcEEEEee
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVR-------DRSDMRWRVMD 124 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~-------~~~~v~f~~~D 124 (772)
...+..++.. .++.+|||+|||+|.++..|++.+. .+|+|+|+|+.|++.|+++... ..++++|+++|
T Consensus 710 le~LLelL~~---~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGD 786 (950)
T 3htx_A 710 VEYALKHIRE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS 786 (950)
T ss_dssp HHHHHHHHHH---SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESC
T ss_pred HHHHHHHhcc---cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECc
Confidence 3344555543 4678999999999999999999862 5799999999999999875431 23479999999
Q ss_pred ccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 125 MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+.+++ +.+++||+|++..+++|+.++. ...+++++.++|||| .+++.+..
T Consensus 787 a~dLp-~~d~sFDlVV~~eVLeHL~dp~-----l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 787 ILEFD-SRLHDVDIGTCLEVIEHMEEDQ-----ACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TTSCC-TTSCSCCEEEEESCGGGSCHHH-----HHHHHHHHHHTTCCS-EEEEEECB
T ss_pred hHhCC-cccCCeeEEEEeCchhhCChHH-----HHHHHHHHHHHcCCC-EEEEEecC
Confidence 99999 8889999999999999997643 567999999999999 76666654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-11 Score=131.59 Aligned_cols=160 Identities=17% Similarity=0.158 Sum_probs=114.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l 128 (772)
.+...+...... .++.+|||+|||+|.++..++..+ ...|+|+|+++.+++.|++++...+. +++|.++|+.++
T Consensus 190 ~la~~l~~~~~~---~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 190 VLAQALLRLADA---RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHHTTC---CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred HHHHHHHHHhCC---CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence 344555555554 577899999999999999999864 24699999999999999888755443 799999999999
Q ss_pred ccccCCCccEEEecccccccccCc-cchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCCC
Q 004133 129 QVFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 207 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~-~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~ 207 (772)
+ .+.+.||+|+++..+.....+. ........+++++.++|||||++++++.....+ +.+.. .+|...-.....
T Consensus 267 ~-~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~-~~~~~---~g~~~~~~~~l~- 340 (354)
T 3tma_A 267 P-RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL-KRALP---PGFALRHARVVE- 340 (354)
T ss_dssp G-GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH-HHHCC---TTEEEEEEEECC-
T ss_pred c-cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHhh---cCcEEEEEEEEE-
Confidence 8 7778899999977665433211 112235789999999999999999998764333 33333 456554433221
Q ss_pred CCCCCCcceEEEEEEe
Q 004133 208 SSSEPSLQTFMVVADK 223 (772)
Q Consensus 208 ~~~~~~l~~f~~~~~K 223 (772)
...+..++++++|
T Consensus 341 ---~g~l~~~i~vl~r 353 (354)
T 3tma_A 341 ---QGGVYPRVFVLEK 353 (354)
T ss_dssp ---BTTBCCEEEEEEE
T ss_pred ---eCCEEEEEEEEEc
Confidence 2346777888776
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=122.12 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=92.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC-c
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-M 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~-l 128 (772)
.+...+...+.. ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.++++....+ .+++++++|+.+ +
T Consensus 17 ~~~~~~~~~l~~--~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 17 KVRGAIFNMIGP--YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAI 94 (177)
T ss_dssp -CHHHHHHHHCS--CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHH
T ss_pred HHHHHHHHHHHh--hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhH
Confidence 344455555542 14678999999999999999998876789999999999999988875543 358999999988 3
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHH--hccccCeEEEEEEcCchh
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~~ii~~~~~~~ 184 (772)
+ ..++.||+|++...+... . ....++.+. ++|+|||++++.......
T Consensus 95 ~-~~~~~fD~i~~~~~~~~~-~-------~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 95 D-CLTGRFDLVFLDPPYAKE-T-------IVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp H-HBCSCEEEEEECCSSHHH-H-------HHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred H-hhcCCCCEEEECCCCCcc-h-------HHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 4 445789999987665321 1 356666776 999999999998765443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=125.34 Aligned_cols=127 Identities=21% Similarity=0.356 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++ .+|+|+|+|+. ++++.++|+.+++ +++++||+|++..+++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 126 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DPRVTVCDMAQVP-LEDESVDVAVFCLSLM 126 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------STTEEESCTTSCS-CCTTCEEEEEEESCCC
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------CceEEEeccccCC-CCCCCEeEEEEehhcc
Confidence 367899999999999998773 36999999995 5789999999998 8889999999999996
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh-hhcccccc-cCCcEEEEEEcCCCCCCCCCcceEEEEEEec
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKE 224 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~ 224 (772)
+ .+ ...+++++.++|+|||++++.++..... ...+...+ ..+|.+....... -..++++++|.
T Consensus 127 ~-~~-------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-------~~~~~~~~~k~ 191 (215)
T 2zfu_A 127 G-TN-------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTN-------SHFFLFDFQKT 191 (215)
T ss_dssp S-SC-------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCS-------TTCEEEEEEEC
T ss_pred c-cC-------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCC-------CeEEEEEEEec
Confidence 3 22 5799999999999999999988764321 12222222 2366655433221 23466777776
Q ss_pred CCc
Q 004133 225 NSS 227 (772)
Q Consensus 225 ~~~ 227 (772)
...
T Consensus 192 ~~~ 194 (215)
T 2zfu_A 192 GPP 194 (215)
T ss_dssp SSC
T ss_pred Ccc
Confidence 443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=138.42 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=94.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++......+++|+++|+.+.. .++++||+|+++..+++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~-~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL-TEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS-CTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc-ccCCCeEEEEECCchhh
Confidence 578999999999999999999876 7999999999999999888766667999999999987 66789999999988876
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.... .......+++++.++|||||+++++.....
T Consensus 311 ~~~~--~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l 344 (381)
T 3dmg_A 311 GGAV--ILDVAQAFVNVAAARLRPGGVFFLVSNPFL 344 (381)
T ss_dssp TCSS--CCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred cccc--cHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence 3221 112367999999999999999999875543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=138.28 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..+++.|..+|+|+|+| .|++.++++....+ .+++++++|+.+++ ++ ++||+|++..+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~~D~Iv~~~~ 138 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS-LP-EKVDVIISEWM 138 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CS-SCEEEEEECCC
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC-cC-CcceEEEEcCh
Confidence 5788999999999999999999988789999999 99999988775544 35999999999998 66 89999999776
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
.+++..... ...+++.+.++|||||++++.
T Consensus 139 ~~~l~~e~~----~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 139 GYFLLRESM----FDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp BTTBTTTCT----HHHHHHHHHHHEEEEEEEESS
T ss_pred hhcccchHH----HHHHHHHHHhhCCCCeEEEEe
Confidence 666543222 678999999999999999764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=129.72 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHH------HHHHHHHHhccCC--CCcEEEEee---ccCcccccC
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKV------VISDMLRRNVRDR--SDMRWRVMD---MTSMQVFMD 133 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~------~I~~a~~~~~~~~--~~v~f~~~D---~~~l~~~~~ 133 (772)
.++.+|||+|||+|.++..+++. |. .+|+|+|+|+. +++.++++..... .++++.++| ...++ +++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~ 120 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-IAD 120 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-GTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-CCC
Confidence 57889999999999999999987 43 57999999997 9999988875443 479999998 55666 788
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++||+|++.++++++.++ ..+++.+.++++|||++++.++..
T Consensus 121 ~~fD~v~~~~~l~~~~~~-------~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 121 QHFDRVVLAHSLWYFASA-------NALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp CCCSEEEEESCGGGSSCH-------HHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CCEEEEEEccchhhCCCH-------HHHHHHHHHHhCCCCEEEEEEecC
Confidence 999999999999998763 357777777778899999988764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.30 E-value=8e-12 Score=130.71 Aligned_cols=100 Identities=24% Similarity=0.346 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++. +++.|.++|+.+++ +++++||+|++..+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~-~~~~~fD~v~~~~~~- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLP-FSDTSMDAIIRIYAP- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCS-BCTTCEEEEEEESCC-
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcchhhCC-CCCCceeEEEEeCCh-
Confidence 6789999999999999999987 2347999999999999997664 57899999999998 888999999985441
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
..++++.++|||||++++.+....+..
T Consensus 159 -------------~~l~~~~~~L~pgG~l~~~~~~~~~~~ 185 (269)
T 1p91_A 159 -------------CKAEELARVVKPGGWVITATPGPRHLM 185 (269)
T ss_dssp -------------CCHHHHHHHEEEEEEEEEEEECTTTTH
T ss_pred -------------hhHHHHHHhcCCCcEEEEEEcCHHHHH
Confidence 257899999999999999988766543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.3e-12 Score=128.51 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc-------cCCCCcEEEEeeccC-cc-cccCCCcc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-------RDRSDMRWRVMDMTS-MQ-VFMDETFD 137 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~-------~~~~~v~f~~~D~~~-l~-~~~~~sfD 137 (772)
++.+|||||||+|.++..|+.. +..+|+|+|+|+.|++.|+++.. ....++.++++|+.+ ++ .+++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 5679999999999999999987 34579999999999999987643 134589999999987 43 25688999
Q ss_pred EEEecccccccccCccchH--HHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 138 VILDKGGLDALMEPELGHK--LGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~--~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.|+....-.+..... ... ....+++++.++|||||++++.+-..
T Consensus 126 ~v~~~~~dp~~k~~h-~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTK-HKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp EEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred EEEEeCCCchhhhhh-hhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 998644322211100 000 01479999999999999999987654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-11 Score=127.63 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCC---chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc----------cccC
Q 004133 68 PPPQILVPGCGN---SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------VFMD 133 (772)
Q Consensus 68 ~~~~ILDlGCG~---G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~----------~~~~ 133 (772)
+..+|||||||+ |.++..+... ...+|+++|+|+.|++.+++++. ...+++|+++|+.+.. .++.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA-KDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT-TCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC-CCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 457999999999 9888766654 23479999999999999988873 3467999999998742 1333
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++||+|++.++|+++.+.+ ...+|++++++|+|||++++.++..
T Consensus 156 ~~~d~v~~~~vlh~~~d~~-----~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDV-----VDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETTTGGGSCTTT-----HHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEechhhhCCcHH-----HHHHHHHHHHhCCCCcEEEEEEecC
Confidence 5899999999999997753 6799999999999999999998764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-12 Score=127.96 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=88.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc-c-cccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-Q-VFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l-~-~~~~~sfDvVi~~~ 143 (772)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++....+ .++.|+++|+.++ + .+++++||.|+...
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 57899999999999999999873 3579999999999999988875443 4799999999885 2 16789999999764
Q ss_pred cccccccCccch-HHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 144 GLDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 144 ~l~~l~~~~~~~-~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
...+........ .....+++++.++|||||++++.+-....
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~ 155 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY 155 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence 433322111000 00135999999999999999999865443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-11 Score=122.32 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc-cccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-VFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~ 144 (772)
++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|+++....+ .+++++++|+.+++ .+++++||+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 57899999999999999999873 3579999999999999988775433 58999999999865 246789999998754
Q ss_pred ccccccCccc-hHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 145 LDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 145 l~~l~~~~~~-~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+....... ......+++++.++|+|||++++.+-.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3322110000 001357999999999999999998744
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=119.19 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. ..++++.++|+.+ + +++++||+|+++..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-~-~~~~~fD~i~~n~~~~~ 90 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------HRGGNLVRADLLC-S-INQESVDVVVFNPPYVP 90 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------CSSSCEEECSTTT-T-BCGGGCSEEEECCCCBT
T ss_pred CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------ccCCeEEECChhh-h-cccCCCCEEEECCCCcc
Confidence 56799999999999999999987 79999999999975 3578999999988 5 57799999999888776
Q ss_pred cccCc--cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 148 LMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 148 l~~~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
..+.. ........+++++.+.| |||+++++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~ 126 (170)
T 3q87_B 91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA 126 (170)
T ss_dssp TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence 44320 00000246788888888 999999887554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=135.35 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=92.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVF 131 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~ 131 (772)
...+...+.. .++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.++++....+ .+++++++|+.+++ +
T Consensus 39 ~~~i~~~l~~---~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~ 113 (348)
T 2y1w_A 39 QRAILQNHTD---FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-L 113 (348)
T ss_dssp HHHHHHTGGG---TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-C
T ss_pred HHHHHhcccc---CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC-C
Confidence 3344444433 46789999999999999999998877899999997 8888887765443 47999999999987 5
Q ss_pred cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+ ++||+|++..+++++..+. ....+.++.++|||||++++.
T Consensus 114 ~-~~~D~Ivs~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 114 P-EQVDIIISEPMGYMLFNER-----MLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp S-SCEEEEEECCCBTTBTTTS-----HHHHHHHGGGGEEEEEEEESC
T ss_pred C-CceeEEEEeCchhcCChHH-----HHHHHHHHHhhcCCCeEEEEe
Confidence 5 6899999998888776543 567888999999999999843
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-11 Score=119.01 Aligned_cols=100 Identities=13% Similarity=0.051 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++.. +..+++++|+|+.+++.++++....+ .++++.++|+.+++ +.++||+|++...
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAF- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC--ccCCcCEEEEecc-
Confidence 4689999999999999999886 34579999999999999988765443 35999999999876 5678999997542
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+ ...+++++.++|+|||++++..-
T Consensus 142 ---~~-------~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 ---AS-------LNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SS-------HHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---CC-------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 11 56899999999999999998753
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=124.77 Aligned_cols=139 Identities=13% Similarity=0.011 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHhcCCCCcccccc--chhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-C-CeEEEEeCC
Q 004133 25 FTSKENWDKFFTIRGIGDSFEWYA--EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-F-HGITNVDFS 100 (772)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~--~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~-~~V~gvDiS 100 (772)
|....+|+..|.... ..+.+.. ..+.+...+...+.. .++.+|||+|||+|.++..++..+ . .+|+++|+|
T Consensus 37 ~~~~~~~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~ 111 (215)
T 2yxe_A 37 FLPEHLKEYAYVDTP--LEIGYGQTISAIHMVGMMCELLDL---KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI 111 (215)
T ss_dssp GSCGGGGGGTTSCSC--EEEETTEEECCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC
T ss_pred cCCchhhhhcccCCC--ccCCCCcEeCcHHHHHHHHHhhCC---CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC
Confidence 445566766665431 1111111 123445556666654 578899999999999999998874 2 579999999
Q ss_pred HHHHHHHHHHhccC-CCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 101 KVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 101 ~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+.+++.++++.... ..++++.++|+.... ..+++||+|++..+++++. +++.++|||||++++..
T Consensus 112 ~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~-------------~~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 112 PELAEKAERTLRKLGYDNVIVIVGDGTLGY-EPLAPYDRIYTTAAGPKIP-------------EPLIRQLKDGGKLLMPV 177 (215)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEESCGGGCC-GGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCcccCC-CCCCCeeEEEECCchHHHH-------------HHHHHHcCCCcEEEEEE
Confidence 99999998876433 246999999986543 2367899999999988763 37899999999999887
Q ss_pred cCc
Q 004133 180 LAE 182 (772)
Q Consensus 180 ~~~ 182 (772)
...
T Consensus 178 ~~~ 180 (215)
T 2yxe_A 178 GRY 180 (215)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=124.89 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccC-cccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS-MQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~-l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++..|..+|+++|+|+.|++.++++....+ .+++++++|+.+ ++ ..+++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-QKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-SCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-hcCCCCCEEEECCCC
Confidence 468999999999999999888887789999999999999988875544 479999999988 45 566799999987664
Q ss_pred cccccCccchHHHHHHHHHHHh--ccccCeEEEEEEcCc
Q 004133 146 DALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLAE 182 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~~ii~~~~~ 182 (772)
+ .. . ...+++.+.+ +|+|||++++.....
T Consensus 133 ~-~~--~-----~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 R-RG--L-----LEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp S-TT--T-----HHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C-CC--c-----HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 3 11 1 4567777765 699999999877553
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=127.40 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccccc---CCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFM---DETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~---~~sfDvVi~~ 142 (772)
++.+|||+|||+|.++..++.. +..+|+++|+|+.|++.++++....+ .+++++++|+.+++ +. +++||+|++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG-QRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT-TCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhc-ccccccCCccEEEEe
Confidence 5689999999999999999864 33479999999999999988765433 36999999999877 54 6899999986
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.+ .+ ...+++++.++|||||++++..
T Consensus 149 ~~----~~-------~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 149 AV----AR-------LSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp CC----SC-------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc----CC-------HHHHHHHHHHhcCCCCEEEEEe
Confidence 62 22 5789999999999999998874
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=144.15 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.++++.. ......|...++.+++ +++++||+|++.++++
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~l~-~~~~~fD~I~~~~vl~ 182 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGI-RVRTDFFEKATADDVR-RTEGPANVIYAANTLC 182 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTC-CEECSCCSHHHHHHHH-HHHCCEEEEEEESCGG
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCC-CcceeeechhhHhhcc-cCCCCEEEEEECChHH
Confidence 5788999999999999999999887 79999999999998876521 1111223445666677 7789999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|+.+ ...++++++++|||||++++.+..
T Consensus 183 h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 183 HIPY-------VQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp GCTT-------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCC-------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9975 579999999999999999987654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-11 Score=124.79 Aligned_cols=121 Identities=15% Similarity=0.069 Sum_probs=91.2
Q ss_pred HHHHhhcCCCCC-CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcc-cc
Q 004133 56 PLISLIGAPTSS-PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ-VF 131 (772)
Q Consensus 56 ~l~~~l~~~~~~-~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~-~~ 131 (772)
++..++.. . ++.+|||+|||+|.++..++..+..+|+|+|+++.+++.|+++...... +++++++|+.++. .+
T Consensus 39 ll~~~~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 39 LLAKFSYL---PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHHCCC---CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS
T ss_pred HHHHHhcC---CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh
Confidence 34555543 5 6889999999999999999998665899999999999999888754433 5999999999875 24
Q ss_pred cCCCccEEEeccccccc-----ccCcc--------chHHHHHHHHHHHhccccCeEEEEEE
Q 004133 132 MDETFDVILDKGGLDAL-----MEPEL--------GHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l-----~~~~~--------~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++++||+|+++..+... .++.. .......+++.+.++|||||+++++.
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 47899999997665433 11100 01125689999999999999999875
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=120.97 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=93.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l 128 (772)
..+...+..++... .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++..... .+++++++|+.+.
T Consensus 29 ~~~~~~~~~~l~~~--~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 106 (187)
T 2fhp_A 29 DKVKESIFNMIGPY--FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA 106 (187)
T ss_dssp HHHHHHHHHHHCSC--CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHHHHHhh--cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHH
Confidence 34555566666321 3678999999999999999888876789999999999999988775443 3699999999874
Q ss_pred c-c--ccCCCccEEEecccccccccCccchHHHHHHHHHH--HhccccCeEEEEEEcCchh
Q 004133 129 Q-V--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV--KRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 129 ~-~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei--~rvLkpGG~~ii~~~~~~~ 184 (772)
. . +.+++||+|++...+.. .. ....++.+ .++|+|||++++.+.....
T Consensus 107 ~~~~~~~~~~fD~i~~~~~~~~-~~-------~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 107 LEQFYEEKLQFDLVLLDPPYAK-QE-------IVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp HHHHHHTTCCEEEEEECCCGGG-CC-------HHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred HHHHHhcCCCCCEEEECCCCCc-hh-------HHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 3 0 22689999998876441 11 34566666 8999999999988765443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=124.24 Aligned_cols=115 Identities=11% Similarity=0.114 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc-cccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-VFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~ 144 (772)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++....+ .+++++++|+.+++ .+++++||.|+....
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 5689999999999999999987 33579999999999999988775443 47999999999864 256789999986543
Q ss_pred ccccccCccch-HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 145 LDALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 145 l~~l~~~~~~~-~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
..+........ .....+++++.++|||||++++.+-..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~ 156 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 156 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 32221100000 002579999999999999999987543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=132.10 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++....+ .+++++++|+.+++ +++++||+|++..+.
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCB
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCch
Confidence 578999999999999999999887789999999 59999988765443 36999999999998 788899999998766
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+.+..... ...++.++.++|||||+++
T Consensus 116 ~~l~~~~~----~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 116 YFLLYESM----MDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCC----HHHHHHHHHHHEEEEEEEE
T ss_pred hhcccHHH----HHHHHHHHHhhcCCCeEEE
Confidence 65543322 5789999999999999987
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.7e-12 Score=121.85 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc-cccc--CCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-QVFM--DETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l-~~~~--~~sfDvVi~~~~ 144 (772)
++.+|||+|||+|.++..++..+.. |+|+|+|+.+++.++++......++++.++|+.+. +.++ .++||+|++...
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 5689999999999999999998875 99999999999999887754444899999999874 2122 248999999877
Q ss_pred ccccccCccchHHHHHHHHHHH--hccccCeEEEEEEcCchh
Q 004133 145 LDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~~ii~~~~~~~ 184 (772)
++ .. ...+++.+. ++|+|||++++.+.....
T Consensus 120 ~~--~~-------~~~~~~~~~~~~~L~~gG~~~~~~~~~~~ 152 (171)
T 1ws6_A 120 YA--MD-------LAALFGELLASGLVEAGGLYVLQHPKDLY 152 (171)
T ss_dssp TT--SC-------TTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred Cc--hh-------HHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence 65 22 234556666 999999999988766544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.2e-11 Score=120.78 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=91.7
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|......+...+...+......++.+|||+|||+|.++..+++. | ..+|+++|+|+.+++.+++++... .++++.++
T Consensus 51 ~~p~~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~ 129 (227)
T 1g8a_A 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILG 129 (227)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEEC
T ss_pred eCCCchhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEc
Confidence 55555555555544454333357889999999999999999987 4 257999999999999998877543 78999999
Q ss_pred eccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 124 DMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 124 D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
|+.+... ...++||+|++... .+. ....++.++.++|||||++++.
T Consensus 130 d~~~~~~~~~~~~~~D~v~~~~~-----~~~----~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 130 DATKPEEYRALVPKVDVIFEDVA-----QPT----QAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCC-----STT----HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcchhhcccCCceEEEECCC-----CHh----HHHHHHHHHHHhcCCCCEEEEE
Confidence 9988420 12468999996543 111 1345699999999999999987
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=133.55 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=95.3
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccC
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTS 127 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~ 127 (772)
....+...+.. .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++...+ .+++|.++|+.+
T Consensus 210 ~~~~ll~~l~~---~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 210 GARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 286 (375)
T ss_dssp HHHHHHHTCCC---SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT
T ss_pred HHHHHHHhCcc---cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc
Confidence 34456666654 456899999999999999999984 4579999999999999988775433 258899999998
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
. +++++||+|+++..+++..... ......+++++.++|||||+++++.......
T Consensus 287 -~-~~~~~fD~Ii~nppfh~~~~~~--~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~ 340 (375)
T 4dcm_A 287 -G-VEPFRFNAVLCNPPFHQQHALT--DNVAWEMFHHARRCLKINGELYIVANRHLDY 340 (375)
T ss_dssp -T-CCTTCEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCH
T ss_pred -c-CCCCCeeEEEECCCcccCcccC--HHHHHHHHHHHHHhCCCCcEEEEEEECCcCH
Confidence 4 6788999999998887532211 1125579999999999999999987554433
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=125.68 Aligned_cols=101 Identities=14% Similarity=0.007 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccccc---CCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFM---DETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~---~~sfDvVi~ 141 (772)
.++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.++++....+ .+++++++|+.+++ .. +++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~-~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLA-REAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHT-TSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhh-cccccCCCceEEEE
Confidence 45789999999999999999876 44579999999999999988775443 36999999999876 43 479999998
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..+. + ...+++.+.++|||||+|++..
T Consensus 158 ~a~~----~-------~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RAVA----P-------LCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ESSC----C-------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCcC----C-------HHHHHHHHHHHcCCCeEEEEEe
Confidence 6532 2 5689999999999999999876
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-11 Score=128.73 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
++.+|||+|||+|.++..+++. +..+++++|+| .+++.++++....+ .+++|.++|+.+.+ ++++ ||+|++..+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~-~D~v~~~~~ 241 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD-YGND-YDLVLLPNF 241 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC-CCSC-EEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC-CCCC-CcEEEEcch
Confidence 5789999999999999999887 23479999999 99999988764432 35999999999877 6554 999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++++.+++ ..+++++++++|+|||++++.++..
T Consensus 242 l~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 242 LHHFDVAT-----CEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp GGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred hccCCHHH-----HHHHHHHHHHhCCCCcEEEEEeecC
Confidence 99885433 6799999999999999999987653
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=128.95 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=103.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
..+.+||+||+|.|.++..+....+..+|++||+||.+++.|++.+ |+ ++++++.+|+.++ .
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl---~~v~~v~gDa~~l----~-------- 185 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV---DGVNVITGDETVI----D-------- 185 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC---CSEEEEESCGGGG----G--------
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC---CCeEEEECchhhC----C--------
Confidence 5678999999998766554444556789999999999999999986 65 6899999999875 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
+..||+|+++....+ -..+++.+.+.|+|||.|+++........
T Consensus 186 -----------------------d~~FDvV~~~a~~~d-------------~~~~l~el~r~LkPGG~Lvv~~~~~~r~~ 229 (298)
T 3fpf_A 186 -----------------------GLEFDVLMVAALAEP-------------KRRVFRNIHRYVDTETRIIYRTYTGMRAI 229 (298)
T ss_dssp -----------------------GCCCSEEEECTTCSC-------------HHHHHHHHHHHCCTTCEEEEEECCGGGGG
T ss_pred -----------------------CCCcCEEEECCCccC-------------HHHHHHHHHHHcCCCcEEEEEcCcchhhh
Confidence 156999998543211 27899999999999999999875433221
Q ss_pred -HHHHHHHHHHhccceEEEeec-CCceEEEEEecCCCcCCCCcHHHHHHHHhhhcCCC
Q 004133 698 -KDMVISRMKMVFNHLFCLQLE-EDVNLVLFGLSSESCIKDNSFPEAAVQLGKLVKFQ 753 (772)
Q Consensus 698 -~~~v~~~l~~vF~~v~~~~~~-~~~N~vl~a~~~~~~~~~~~l~~~a~~l~~~~~~~ 753 (772)
...+.....+.|..+..+... +-.|.|+|+++...+--.+.+-+..++=+.+++|+
T Consensus 230 l~~~v~~~~~~gf~~~~~~~p~~~v~N~vv~a~k~~~~~~~~~~~~~~~~~~~~~~~~ 287 (298)
T 3fpf_A 230 LYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKLEGKPIPNPLLGLD 287 (298)
T ss_dssp SSCCCCTGGGTTEEEEEEECCCTTCCCEEEEEEECC----------------------
T ss_pred ccccCChhhhhhhhheeEECCCCCcCcEEEEEEccCCchHHHHHHhcccCCcceeccc
Confidence 111112344577766665543 44899999988875322233555555555555554
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-11 Score=125.53 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.|. +|+++|+|+.+++.++++....+..+++.++|+.+. +++++||+|+++...+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~--~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEEEEEEECCHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc--CcCCCCCEEEECCcHH
Confidence 4678999999999999999999887 899999999999999888755444489999998873 4567899999875443
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
. ...++.++.++|||||++++..+...
T Consensus 196 ~----------~~~~l~~~~~~LkpgG~lils~~~~~ 222 (254)
T 2nxc_A 196 L----------HAALAPRYREALVPGGRALLTGILKD 222 (254)
T ss_dssp H----------HHHHHHHHHHHEEEEEEEEEEEEEGG
T ss_pred H----------HHHHHHHHHHHcCCCCEEEEEeeccC
Confidence 2 46899999999999999999776543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=131.38 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc--ccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM--QVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l--~~~~~~sfDvVi~~ 142 (772)
...+|||+|||+|.++..+++. +..+++++|+ +.+++.++++..... .+++|+.+|+.+. + ++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-FP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-CC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-CC-CCcCEEEEe
Confidence 4689999999999999999886 2347999999 999999988875443 3799999999986 4 55 789999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+++++.+++ ..++|++++++|||||++++.+..
T Consensus 256 ~vlh~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 256 QFLDCFSEEE-----VISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp SCSTTSCHHH-----HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred chhhhCCHHH-----HHHHHHHHHHhcCCCcEEEEEeec
Confidence 9999886543 678999999999999999998754
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.4e-11 Score=120.93 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=90.3
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|......+...+...++.....++.+|||+|||+|.++..+++. | ...|+++|+|+.|++.+.+.+.. ..++.++++
T Consensus 54 w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-r~nv~~i~~ 132 (232)
T 3id6_C 54 WNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-RPNIFPLLA 132 (232)
T ss_dssp CCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-CTTEEEEEC
T ss_pred hchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-cCCeEEEEc
Confidence 43334466666766665444578999999999999999999886 3 34799999999998776555433 468999999
Q ss_pred eccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 124 DMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 124 D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+..... ...++||+|++.... ++ ....+...+.++|||||+|++..
T Consensus 133 Da~~~~~~~~~~~~~D~I~~d~a~-----~~----~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 133 DARFPQSYKSVVENVDVLYVDIAQ-----PD----QTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CTTCGGGTTTTCCCEEEEEECCCC-----TT----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhccccceEEEEecCCC-----hh----HHHHHHHHHHHhCCCCeEEEEEE
Confidence 9987541 124689999987543 11 13344566677999999999874
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=120.49 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=93.9
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~ 127 (772)
.....+...+.. .++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.++++.... ..++++.++|+.+
T Consensus 83 ~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 83 KDASAMVTLLDL---APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE 159 (258)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred hHHHHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence 333445555554 57889999999999999999987 4 458999999999999998876443 3579999999999
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.+ +++++||+|++. ..+ ...+++++.++|+|||++++.......
T Consensus 160 ~~-~~~~~~D~v~~~-----~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~~ 203 (258)
T 2pwy_A 160 AE-LEEAAYDGVALD-----LME-------PWKVLEKAALALKPDRFLVAYLPNITQ 203 (258)
T ss_dssp CC-CCTTCEEEEEEE-----SSC-------GGGGHHHHHHHEEEEEEEEEEESCHHH
T ss_pred cC-CCCCCcCEEEEC-----CcC-------HHHHHHHHHHhCCCCCEEEEEeCCHHH
Confidence 87 788899999972 222 247899999999999999999876543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-11 Score=123.22 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHhcCCCCcccc--ccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCH
Q 004133 24 DFTSKENWDKFFTIRGIGDSFEW--YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW--~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~ 101 (772)
.|....+|+..|.... ..+.+ ....+.+...+...+.. .++.+|||+|||+|.++..+++.+..+|+++|+++
T Consensus 50 ~f~~~~~~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~ 124 (235)
T 1jg1_A 50 LSVEDKYKKYAHIDEP--LPIPAGQTVSAPHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIP 124 (235)
T ss_dssp GGSCGGGGGGTTSSSC--EECSTTCEECCHHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCH
T ss_pred hhCCchhhhcCccCCC--cccCCCceeccHHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCH
Confidence 4555666766665431 11211 11223455566666654 57889999999999999999987425799999999
Q ss_pred HHHHHHHHHhccCC-CCcEEEEeeccCcccccCC-CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 102 VVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDE-TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 102 ~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~-sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.+++.++++....+ .++++.++|+ ..+ +++. .||+|++...++++. +++.++|+|||++++..
T Consensus 125 ~~~~~a~~~~~~~~~~~v~~~~~d~-~~~-~~~~~~fD~Ii~~~~~~~~~-------------~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 125 ELVEFAKRNLERAGVKNVHVILGDG-SKG-FPPKAPYDVIIVTAGAPKIP-------------EPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCG-GGC-CGGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCcEEEECCc-ccC-CCCCCCccEEEECCcHHHHH-------------HHHHHhcCCCcEEEEEE
Confidence 99999988775433 4699999998 334 4444 599999988887663 36789999999999887
Q ss_pred cC
Q 004133 180 LA 181 (772)
Q Consensus 180 ~~ 181 (772)
..
T Consensus 190 ~~ 191 (235)
T 1jg1_A 190 GS 191 (235)
T ss_dssp CS
T ss_pred ec
Confidence 54
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-11 Score=122.39 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=89.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
+.....+..++.. .++.+|||+|||+|..+..++... ..+|+++|+|+.+++.++++....+ .+++++++|+.+
T Consensus 57 ~~~~~~l~~~~~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 133 (232)
T 3ntv_A 57 RLTLDLIKQLIRM---NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE 133 (232)
T ss_dssp HHHHHHHHHHHHH---HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHHHHHhh---cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence 3444555555543 367899999999999999999852 4579999999999999988875544 379999999988
Q ss_pred ccc-ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 MQV-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l~~-~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
... ..+++||+|+....... ...+++++.++|||||++++-.
T Consensus 134 ~~~~~~~~~fD~V~~~~~~~~----------~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 134 QFENVNDKVYDMIFIDAAKAQ----------SKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp CHHHHTTSCEEEEEEETTSSS----------HHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHhhccCCccEEEEcCcHHH----------HHHHHHHHHHhcCCCeEEEEee
Confidence 641 12689999996543211 5789999999999999998843
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-11 Score=132.27 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=96.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
.....+...+.. .++.+|||+|||+|.++..++..+. .+|+++|+|+.|++.++++........++.++|+.+.
T Consensus 183 ~~~~~ll~~l~~---~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~-- 257 (343)
T 2pjd_A 183 VGSQLLLSTLTP---HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE-- 257 (343)
T ss_dssp HHHHHHHHHSCT---TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT--
T ss_pred HHHHHHHHhcCc---CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc--
Confidence 345556666643 3567999999999999999998863 3799999999999999988866666788899998764
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.+++||+|+++..+++.... .......+++++.++|||||+++++....
T Consensus 258 -~~~~fD~Iv~~~~~~~g~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 258 -VKGRFDMIISNPPFHDGMQT--SLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp -CCSCEEEEEECCCCCSSSHH--HHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred -ccCCeeEEEECCCcccCccC--CHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 36799999999988753210 11226799999999999999999987543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=119.84 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=89.3
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhcc---CCC--CcEEEEeeccCcc-
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR---DRS--DMRWRVMDMTSMQ- 129 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~---~~~--~v~f~~~D~~~l~- 129 (772)
+..++.. .++.+|||+|||+|.++..++... ..+|+++|+++.+++.++++... ... +++++++|+.++.
T Consensus 28 L~~~~~~---~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVAD---DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCC---CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhcc---cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhh
Confidence 4455543 467899999999999999999884 35799999999999999887754 332 4899999999872
Q ss_pred -----cccCCCccEEEecccccccc---cCcc--------chHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 130 -----VFMDETFDVILDKGGLDALM---EPEL--------GHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 130 -----~~~~~sfDvVi~~~~l~~l~---~~~~--------~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+++++||+|+++..+.... .++. .......+++.+.++|||||+++++.-.
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 14578999999985443321 0000 0001578999999999999999987643
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-12 Score=126.00 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
+...+...+.. ..++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.++++......++++.++|+.+ + +
T Consensus 17 ~~~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~ 92 (215)
T 4dzr_A 17 LVEEAIRFLKR--MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-W-L 92 (215)
T ss_dssp HHHHHHHHHTT--CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-H-H
T ss_pred HHHHHHHHhhh--cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-h-h
Confidence 33344444432 1367899999999999999999984 2379999999999999987775444478999999988 4 5
Q ss_pred cC-----CCccEEEeccccccccc------C-------------ccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 132 MD-----ETFDVILDKGGLDALME------P-------------ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 132 ~~-----~sfDvVi~~~~l~~l~~------~-------------~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++ ++||+|+++..+..... . ..+...+..+++++.++|||||+++++...
T Consensus 93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 65 89999999755432211 0 001111378999999999999996555544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=127.70 Aligned_cols=107 Identities=15% Similarity=0.045 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++..... .+++|..+|+. .+ ++. .||+|++..
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-~p~-~~D~v~~~~ 243 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DP-LPA-GAGGYVLSA 243 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SC-CCC-SCSEEEEES
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CC-CCC-CCcEEEEeh
Confidence 34689999999999999999886 3347999999 999999988775443 57999999998 34 455 899999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++++.+++ ..+++++++++|+|||++++.+...
T Consensus 244 vlh~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 244 VLHDWDDLS-----AVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp CGGGSCHHH-----HHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred hhccCCHHH-----HHHHHHHHHHhcCCCCEEEEEeecC
Confidence 999986643 6799999999999999999987543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-10 Score=126.71 Aligned_cols=116 Identities=12% Similarity=0.014 Sum_probs=87.0
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHH-------HHHhccCC---CCcEEE
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDM-------LRRNVRDR---SDMRWR 121 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a-------~~~~~~~~---~~v~f~ 121 (772)
+...+...+.. .++.+|||+|||+|.++..++.. |...|+|+|+|+.+++.| ++++...+ .+++++
T Consensus 230 ~v~~ml~~l~l---~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i 306 (433)
T 1u2z_A 230 FLSDVYQQCQL---KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 (433)
T ss_dssp HHHHHHHHTTC---CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred HHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence 33444444443 57899999999999999999986 666799999999999888 66665443 579999
Q ss_pred EeeccCcc-cc--cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 122 VMDMTSMQ-VF--MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 122 ~~D~~~l~-~~--~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++|....+ .+ ..++||+|+++.++. .. + ...+|+++.++|||||++++..
T Consensus 307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l~-~~--d-----~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 307 LKKSFVDNNRVAELIPQCDVILVNNFLF-DE--D-----LNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTTC-CH--H-----HHHHHHHHHTTCCTTCEEEESS
T ss_pred EcCccccccccccccCCCCEEEEeCccc-cc--c-----HHHHHHHHHHhCCCCeEEEEee
Confidence 98654321 02 257899999876552 11 1 5678999999999999999874
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=115.17 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=90.5
Q ss_pred ccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecc
Q 004133 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (772)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~ 126 (772)
|.....+...+...+......++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.++++....+.+++++++|+.
T Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 107 (207)
T 1wy7_A 28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS 107 (207)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGG
T ss_pred ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchH
Confidence 33334444444444321112467899999999999999999987768999999999999998887554448999999999
Q ss_pred CcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 127 SMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 127 ~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+++ ++||+|+++..++...... ...+++++.++| ||.++..
T Consensus 108 ~~~----~~~D~v~~~~p~~~~~~~~-----~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 108 EFN----SRVDIVIMNPPFGSQRKHA-----DRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp GCC----CCCSEEEECCCCSSSSTTT-----THHHHHHHHHHC--SEEEEEE
T ss_pred HcC----CCCCEEEEcCCCccccCCc-----hHHHHHHHHHhc--CcEEEEE
Confidence 875 4899999988877664322 357889999998 6655444
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=120.86 Aligned_cols=103 Identities=9% Similarity=0.093 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeeccCcccccCCCccEEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~-----~~~~~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.+.+++. ...++++|+++|+.+++ +++++ |.|+
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~-d~v~ 103 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGV-GELH 103 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCE-EEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCC-CEEE
Confidence 467899999999999999999983 3579999999999886433321 22347999999999999 77777 8776
Q ss_pred eccccc-----ccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 141 DKGGLD-----ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 141 ~~~~l~-----~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
...... ++.++ ..++++++++|||||++++.
T Consensus 104 ~~~~~~~~~~~~~~~~-------~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSS-------PEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp EESCCHHHHHHHHTSS-------SHHHHHHHHTEEEEEEEEEE
T ss_pred EEccchhhhhhhhccH-------HHHHHHHHHHcCCCcEEEEE
Confidence 322211 22222 58999999999999999984
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-11 Score=113.11 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc-------ccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV-------FMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~-------~~~~sfD 137 (772)
.++.+|||+|||+|.++..+++. |. .+++++|+|+ +++. .++++.++|+.+.+. +++++||
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 46789999999999999999887 43 5899999999 6531 578999999988641 3567999
Q ss_pred EEEecccccccccCccch----HHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 138 VILDKGGLDALMEPELGH----KLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~----~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+|++...+++........ .....+++++.++|+|||++++..+..+.
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 999988887664321000 01268999999999999999998876554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=121.21 Aligned_cols=102 Identities=16% Similarity=0.211 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC-C-CCcEEEEeeccCcccccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD-R-SDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~-~-~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.... + .++++.++|+.+ + +++++||+|++.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~-~~~~~fD~Vi~~ 186 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-F-ISDQMYDAVIAD 186 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-C-CCSCCEEEEEEC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-c-CcCCCccEEEEc
Confidence 67889999999999999999886 2357999999999999998887544 3 579999999988 4 677899999972
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+.. ...+++++.++|||||++++.+...
T Consensus 187 -----~~~-------~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 187 -----IPD-------PWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp -----CSC-------GGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred -----CcC-------HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 222 2478999999999999999988665
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.3e-11 Score=117.86 Aligned_cols=99 Identities=13% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.++++.. +++++++|+.+++ ++||+|+++..++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~~----~~~D~v~~~~p~~ 121 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEIS----GKYDTWIMNPPFG 121 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGCC----CCEEEEEECCCC-
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHCC----CCeeEEEECCCch
Confidence 3678999999999999999998877679999999999999987763 7999999998865 6899999999998
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+..... ...+++++.++| |+.+++...
T Consensus 122 ~~~~~~-----~~~~l~~~~~~~--g~~~~~~~~ 148 (200)
T 1ne2_A 122 SVVKHS-----DRAFIDKAFETS--MWIYSIGNA 148 (200)
T ss_dssp -----------CHHHHHHHHHHE--EEEEEEEEG
T ss_pred hccCch-----hHHHHHHHHHhc--CcEEEEEcC
Confidence 876532 257899999998 565555543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-11 Score=140.40 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=87.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
.+.+|||||||.|.++..|++.|. +|||||+|+.+|+.|+..+...+ .+++|.++|+.++. .+.+++||+|++..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 368999999999999999999998 69999999999999988876554 57999999999973 1567899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+.++.. ...+..+.+.|+++|..++..+.
T Consensus 145 ehv~~~~~-----~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 145 HHIVHLHG-----IDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp HHHHHHHC-----HHHHHHHHHHHHHHSSEEEEECC
T ss_pred hcCCCHHH-----HHHHHHHHHHhccccceeeEEec
Confidence 99976431 22334567778888876666544
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=131.18 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=79.0
Q ss_pred CCCeEEEEcCC------CchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc------C
Q 004133 68 PPPQILVPGCG------NSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM------D 133 (772)
Q Consensus 68 ~~~~ILDlGCG------~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~------~ 133 (772)
++.+||||||| +|..+..++.. +..+|+|+|+|+.|. ...++++|+++|+.+++ +. +
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~~~rI~fv~GDa~dlp-f~~~l~~~d 286 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VDELRIRTIQGDQNDAE-FLDRIARRY 286 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GCBTTEEEEECCTTCHH-HHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hcCCCcEEEEecccccc-hhhhhhccc
Confidence 46899999999 77777777664 345799999999862 13468999999999988 76 7
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++||+|++.+. ++..+ ...+|++++++|||||+|++.++..
T Consensus 287 ~sFDlVisdgs-H~~~d-------~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 287 GPFDIVIDDGS-HINAH-------VRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp CCEEEEEECSC-CCHHH-------HHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred CCccEEEECCc-ccchh-------HHHHHHHHHHhcCCCeEEEEEeccc
Confidence 89999998754 33322 5789999999999999999987654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=122.77 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=93.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeec
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDM 125 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~----~~~v~f~~~D~ 125 (772)
.....+...+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++.... ..++++.++|+
T Consensus 86 ~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 86 KDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 162 (280)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHHHcCC---CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 344455555554 57889999999999999999985 3 457999999999999998877543 35799999999
Q ss_pred cCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 126 ~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.+.+ +++++||+|++.. .+ ...+++++.++|+|||++++.+.....
T Consensus 163 ~~~~-~~~~~~D~v~~~~-----~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~~ 208 (280)
T 1i9g_A 163 ADSE-LPDGSVDRAVLDM-----LA-------PWEVLDAVSRLLVAGGVLMVYVATVTQ 208 (280)
T ss_dssp GGCC-CCTTCEEEEEEES-----SC-------GGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred HhcC-CCCCceeEEEECC-----cC-------HHHHHHHHHHhCCCCCEEEEEeCCHHH
Confidence 9987 7788999999732 22 237899999999999999998876544
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=125.96 Aligned_cols=106 Identities=16% Similarity=0.051 Sum_probs=89.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++.... ..+++|..+|+. .+ ++. .||+|++..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~-~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ET-IPD-GADVYLIKH 276 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TC-CCS-SCSEEEEES
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CC-CCC-CceEEEhhh
Confidence 46789999999999999999987 2347999999 99999998877544 357999999998 44 555 899999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++++.+++ ..+++++++++|+|||++++.+..
T Consensus 277 vlh~~~d~~-----~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 277 VLHDWDDDD-----VVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp CGGGSCHHH-----HHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred hhccCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 999886543 568999999999999999998754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=125.82 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++..... .+++|..+|+.+.+ +++. |+|++..
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~--D~v~~~~ 264 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YPEA--DAVLFCR 264 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC-CCCC--SEEEEES
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC-CCCC--CEEEEec
Confidence 567899999999999999999872 347999999 999999988765432 35999999999887 6543 9999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++++.+++ ..+++++++++|||||++++.++..
T Consensus 265 vlh~~~d~~-----~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 265 ILYSANEQL-----STIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp CGGGSCHHH-----HHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred hhccCCHHH-----HHHHHHHHHHhcCCCCEEEEEeccc
Confidence 999886532 6799999999999999999887653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=116.32 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..++..| ..+|+++|+++.+++.|+++....+. ++++.++|..+.. .+++.||+|+..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~-~~~~~~D~IviaG 98 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF-EEADNIDTITICG 98 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGGCCCEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-ccccccCEEEEeC
Confidence 357899999999999999999986 35799999999999999988765543 5999999999876 4555899988766
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 205 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~ 205 (772)
+.-.+ +..++....+.|+++|+|++.........+.++.. .+|.+.-..+-
T Consensus 99 mGg~l---------I~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~--~Gf~i~~E~lv 149 (230)
T 3lec_A 99 MGGRL---------IADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAA--NDFEIVAEDIL 149 (230)
T ss_dssp ECHHH---------HHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH--TTEEEEEEEEE
T ss_pred CchHH---------HHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHH--CCCEEEEEEEE
Confidence 65444 56899999999999999999887654443333322 37888777754
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=126.81 Aligned_cols=105 Identities=20% Similarity=0.122 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++....+ .+++|.++|+.+ + ++. .||+|++..
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P-LPV-TADVVLLSF 256 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C-CSC-CEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-c-CCC-CCCEEEEec
Confidence 467899999999999999999873 347999999 999999988775443 379999999986 3 443 499999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++++.+++ ...++++++++|||||++++.++
T Consensus 257 vl~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 257 VLLNWSDED-----ALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCCCHHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 999876532 46899999999999999999876
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=124.86 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=91.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l 128 (772)
.....+...+.. .++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.++++....+ .++++.++|+.+.
T Consensus 62 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence 445555666654 6789999999999999999998743 459999999999999988875443 4699999999986
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
. ..+++||+|++..+++++. +++.++|||||++++...
T Consensus 139 ~-~~~~~fD~Iv~~~~~~~~~-------------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 V-PEFSPYDVIFVTVGVDEVP-------------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp C-GGGCCEEEEEECSBBSCCC-------------HHHHHHEEEEEEEEEEBC
T ss_pred c-ccCCCeEEEEEcCCHHHHH-------------HHHHHhcCCCcEEEEEEC
Confidence 5 4678999999999998773 467889999999998753
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.14 E-value=9.5e-11 Score=119.19 Aligned_cols=120 Identities=9% Similarity=0.023 Sum_probs=89.4
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
....++..++.. .++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.++++....+ .+++++++|+.+
T Consensus 45 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (221)
T 3u81_A 45 AKGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD 121 (221)
T ss_dssp HHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH
Confidence 344445554443 35789999999999999999985 2 3479999999999999988765433 359999999876
Q ss_pred -ccccc----CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 128 -MQVFM----DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 128 -l~~~~----~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++.+. .++||+|+..+..++... ...+++.+ ++|||||++++.+...
T Consensus 122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~-------~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 122 LIPQLKKKYDVDTLDMVFLDHWKDRYLP-------DTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp HGGGTTTTSCCCCCSEEEECSCGGGHHH-------HHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred HHHHHHHhcCCCceEEEEEcCCcccchH-------HHHHHHhc-cccCCCeEEEEeCCCC
Confidence 33122 268999998776665533 34677777 9999999999876554
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-10 Score=117.35 Aligned_cols=143 Identities=12% Similarity=0.010 Sum_probs=105.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..++..+. ..|+++|+++.+++.|+++....+. ++++.++|..+.. .+++.||+|+..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~-~~~~~~D~Iviag 98 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI-EKKDAIDTIVIAG 98 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGGCCCEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc-CccccccEEEEeC
Confidence 3578999999999999999999863 4799999999999999988765543 5999999998865 4444699988766
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEe
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADK 223 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K 223 (772)
+.-.+ +..++.+..+.|+++|+|++.........+.++.. .+|.+.-..+-.. ....|.+..+.+
T Consensus 99 mGg~l---------I~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~--~Gf~i~~E~lv~e----~~k~Yeii~~~~ 163 (244)
T 3gnl_A 99 MGGTL---------IRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQ--NNWLITSEAILRE----DNKVYEIMVLAP 163 (244)
T ss_dssp ECHHH---------HHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH--HTEEEEEEEEEEE----TTEEEEEEEEEE
T ss_pred CchHH---------HHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHH--CCCEEEEEEEEEE----CCEEEEEEEEEe
Confidence 55433 67899999999999999999886654443333332 2787766554321 123445555565
Q ss_pred cC
Q 004133 224 EN 225 (772)
Q Consensus 224 ~~ 225 (772)
..
T Consensus 164 ~~ 165 (244)
T 3gnl_A 164 SE 165 (244)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.7e-11 Score=119.69 Aligned_cols=101 Identities=13% Similarity=0.271 Sum_probs=85.7
Q ss_pred CeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.+||.||+|+|..+.++...+| ..+|++||+|+.+++.|++++ |+ .+++++++.+|+.+++....
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-~~~~i~~~~gda~~~l~~~~---------- 126 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-SPSRVRFLLSRPLDVMSRLA---------- 126 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-CGGGEEEECSCHHHHGGGSC----------
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcCcEEEEEcCHHHHHHHhc----------
Confidence 4999999999999999998875 679999999999999999998 44 12689999999999987653
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
...||+|++|.+..+ ...+++.+.+.|+|||+++++
T Consensus 127 ---------------------~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 127 ---------------------NDSYQLVFGQVSPMD-------------LKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp ---------------------TTCEEEEEECCCTTT-------------HHHHHHHHHHHEEEEEEEEET
T ss_pred ---------------------CCCcCeEEEcCcHHH-------------HHHHHHHHHHHcCCCcEEEEe
Confidence 257999999865432 267999999999999999985
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=119.48 Aligned_cols=102 Identities=9% Similarity=0.069 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEEeeccCcc-cccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ-VFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~~D~~~l~-~~~~~sfDvVi~ 141 (772)
++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.++++....+ .+++++++|+.+.. .+++++||+|+.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 3459999999999999999885 2 3579999999999999988875543 36999999998753 234689999987
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...... ...+++++.++|||||++++-.
T Consensus 136 d~~~~~----------~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 136 QVSPMD----------LKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CCCTTT----------HHHHHHHHHHHEEEEEEEEETT
T ss_pred cCcHHH----------HHHHHHHHHHHcCCCcEEEEeC
Confidence 543211 5679999999999999998843
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-11 Score=120.09 Aligned_cols=109 Identities=18% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCC-HHHHHHH---HHHhccCC-CCcEEEEeeccCccccc-CCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFS-KVVISDM---LRRNVRDR-SDMRWRVMDMTSMQVFM-DETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS-~~~I~~a---~~~~~~~~-~~v~f~~~D~~~l~~~~-~~sfDvVi 140 (772)
++.+|||+|||+|.++..++.. ....|+|+|+| +.|++.| +++....+ +++.|.++|+.+++ .. .+.+|.|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~-~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP-FELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC-GGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh-hhccCeEEEEE
Confidence 6789999999999999999864 23469999999 7777766 55554333 47999999999986 21 24455554
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
............ ......++++++|+|||||++++++
T Consensus 103 ~~~~~~~~~~~~--~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 103 ILFPWGTLLEYV--IKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EESCCHHHHHHH--HTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EeCCCcHHhhhh--hcchHHHHHHHHHhcCCCcEEEEEE
Confidence 433221110000 0002468999999999999999854
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=116.29 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=88.4
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccC------CCCcEEEEee
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMD 124 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~------~~~v~f~~~D 124 (772)
....+...+.. ...++.+|||+|||+|.++..+++. |. .+|+++|+|+.+++.++++.... ..++++.++|
T Consensus 63 ~~~~~l~~l~~-~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 141 (226)
T 1i1n_A 63 MHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 141 (226)
T ss_dssp HHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHHHh-hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC
Confidence 33344455431 1157889999999999999999886 43 47999999999999998776442 3479999999
Q ss_pred ccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 125 MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+.+.. ..+++||+|++...+.++ ++++.++|||||++++....
T Consensus 142 ~~~~~-~~~~~fD~i~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 142 GRMGY-AEEAPYDAIHVGAAAPVV-------------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GGGCC-GGGCCEEEEEECSBBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred cccCc-ccCCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEec
Confidence 98766 567889999988776544 35788999999999987654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=132.91 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..+++.|..+|+|+|+|+ +++.|+++....+ .+++++++|+.+++ ++ ++||+|++..+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP-EQVDIIISEPM 233 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEECCCC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc-cC-CCeEEEEEeCc
Confidence 46789999999999999999988777899999999 9999987765443 47999999999987 54 68999999887
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
++++..+. ....+.++.++|||||++++
T Consensus 234 ~~~~~~e~-----~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 234 GYMLFNER-----MLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHHTCHH-----HHHHHHHGGGGEEEEEEEES
T ss_pred hHhcCcHH-----HHHHHHHHHHhcCCCCEEEE
Confidence 77665432 45677889999999999984
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.13 E-value=9.6e-11 Score=127.10 Aligned_cols=132 Identities=20% Similarity=0.058 Sum_probs=93.5
Q ss_pred cccchhhHHHHHHHhhc-CCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC---CcEEE
Q 004133 46 WYAEWPQLRDPLISLIG-APTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWR 121 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~-~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~---~v~f~ 121 (772)
|+.+.......+..++. . .++.+|||+|||+|.++..++..|. +|+++|+|+.+++.+++++...+. +++|+
T Consensus 133 ~f~dq~~~~~~l~~~~~~~---~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i 208 (332)
T 2igt_A 133 VFPEQIVHWEWLKNAVETA---DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWI 208 (332)
T ss_dssp CCGGGHHHHHHHHHHHHHS---SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEE
T ss_pred echHHHHHHHHHHHHHHhc---CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEE
Confidence 44444445555666663 2 2567999999999999999999887 899999999999999887654332 48999
Q ss_pred EeeccCcccc---cCCCccEEEecccccccccCc---cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 122 VMDMTSMQVF---MDETFDVILDKGGLDALMEPE---LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 122 ~~D~~~l~~~---~~~sfDvVi~~~~l~~l~~~~---~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++|+.++... ..++||+|++........... ........+++++.++|+|||++++....
T Consensus 209 ~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 209 CEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp CSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 9999885401 157899999854322111000 01122678999999999999997765544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-10 Score=119.31 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeC-CHHHHHHHHHHh-----ccCC------CCcEEEEeeccCcc-cc--
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF-SKVVISDMLRRN-----VRDR------SDMRWRVMDMTSMQ-VF-- 131 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDi-S~~~I~~a~~~~-----~~~~------~~v~f~~~D~~~l~-~~-- 131 (772)
.++.+|||+|||+|.++..++..|..+|+++|+ |+.+++.++++. ...+ .++++...|..+.. .+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 357899999999999999999888768999999 899999998876 2222 36888877766532 12
Q ss_pred --cCCCccEEEecccccccccCccchHHHHHHHHHHHhccc---c--CeEEEEEE
Q 004133 132 --MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK---S--GGKFVCLT 179 (772)
Q Consensus 132 --~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLk---p--GG~~ii~~ 179 (772)
.+++||+|++..++++... ...+++.+.++|+ | ||+++++.
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~-------~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQA-------HDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGG-------HHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred hccCCCCCEEEEeCcccChHH-------HHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 3678999999888877544 6789999999999 9 99877653
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=119.42 Aligned_cols=105 Identities=10% Similarity=0.027 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC-ccccc-CCCccEEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-MQVFM-DETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~-l~~~~-~~sfDvVi 140 (772)
.++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.++++....+ .++++.++|+.+ ++.+. .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 35789999999999999999987 2 4579999999999999988875443 369999999987 33121 34899999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+..... . ...+++++.++|||||++++....
T Consensus 142 ~d~~~~-----~-----~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 142 IDADKP-----N-----NPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp ECSCGG-----G-----HHHHHHHHHHTCCTTCEEEEECCS
T ss_pred ECCchH-----H-----HHHHHHHHHHhcCCCeEEEEeCCC
Confidence 754211 1 568999999999999999887544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=118.68 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=92.7
Q ss_pred chhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeec
Q 004133 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (772)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~ 125 (772)
..+.....+..++.. .++.+|||+|||+|..+..++... ..+|+++|+|+.+++.++++....+ .++++.++|+
T Consensus 38 ~~~~~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 114 (233)
T 2gpy_A 38 MDLLGMESLLHLLKM---AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA 114 (233)
T ss_dssp CCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG
T ss_pred cCHHHHHHHHHHHhc---cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH
Confidence 344555666666543 467899999999999999999872 3579999999999999988875443 3699999999
Q ss_pred cCc-cccc--CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 126 TSM-QVFM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 126 ~~l-~~~~--~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+. + .. +++||+|++..... . ...+++++.++|+|||++++.+.
T Consensus 115 ~~~~~-~~~~~~~fD~I~~~~~~~-----~-----~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 115 LQLGE-KLELYPLFDVLFIDAAKG-----Q-----YRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GGSHH-HHTTSCCEEEEEEEGGGS-----C-----HHHHHHHHGGGEEEEEEEEEETT
T ss_pred HHHHH-hcccCCCccEEEECCCHH-----H-----HHHHHHHHHHHcCCCeEEEEEcC
Confidence 884 3 33 57899999866543 1 57899999999999999998754
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-10 Score=113.33 Aligned_cols=106 Identities=13% Similarity=0.246 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc-------C----CC
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM-------D----ET 135 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~-------~----~s 135 (772)
.++.+|||+|||+|.++..+++.+ ..|+|+|+++. ...++++++++|+++.+ .. . ++
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~----------~~~~~v~~~~~D~~~~~-~~~~~~~~~~~~~~~~ 91 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEM----------EEIAGVRFIRCDIFKET-IFDDIDRALREEGIEK 91 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCC----------CCCTTCEEEECCTTSSS-HHHHHHHHHHHHTCSS
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC-CcEEEEecccc----------ccCCCeEEEEccccCHH-HHHHHHHHhhcccCCc
Confidence 468999999999999999999884 47999999983 12358999999999865 21 1 49
Q ss_pred ccEEEecccccccccC----ccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 136 FDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
||+|++....+..... .........+++.+.++|||||.|++..+..+.
T Consensus 92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 9999987644322110 001122568899999999999999998886554
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=119.57 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhccC---CC--C----------------------
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD---RS--D---------------------- 117 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~---g~~~V~gvDiS~~~I~~a~~~~~~~---~~--~---------------------- 117 (772)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++.... .. .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999876 2247999999999999998765432 11 1
Q ss_pred ---cE-------------EEEeeccCcccc-----cCCCccEEEecccccccccCc--cchHHHHHHHHHHHhccccCeE
Q 004133 118 ---MR-------------WRVMDMTSMQVF-----MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGK 174 (772)
Q Consensus 118 ---v~-------------f~~~D~~~l~~~-----~~~sfDvVi~~~~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~ 174 (772)
++ |.++|+.+.. . ...+||+|+++..+....... ........+++++.++|+|||+
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPR-ALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGG-GHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhccccccccccceeeccccccc-ccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 56 9999998743 1 345899999987665443211 1123477999999999999999
Q ss_pred EEEEEcCc
Q 004133 175 FVCLTLAE 182 (772)
Q Consensus 175 ~ii~~~~~ 182 (772)
++++....
T Consensus 210 l~~~~~~~ 217 (250)
T 1o9g_A 210 IAVTDRSR 217 (250)
T ss_dssp EEEEESSS
T ss_pred EEEeCcch
Confidence 99865443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=126.28 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
+.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++..... .+++|..+|+.+.+.+..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 789999999999999999887 3357999999 789999987765433 369999999988652356679999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++.+++ ...++++++++|+|||++++.+..
T Consensus 259 h~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 259 HYFDARE-----AREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp GGSCHHH-----HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 9886533 689999999999999999998754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=120.42 Aligned_cols=110 Identities=10% Similarity=-0.007 Sum_probs=87.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++.++.+..|. ++++||++|.|++.|++++.- ...+++++.+|+.+.+....
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~----------- 125 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPTLP----------- 125 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGGSC-----------
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhh-CCCceEEEeehHHhhccccc-----------
Confidence 45579999999999999999888765 899999999999999999853 35678999999998866543
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-cHHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-~~~fl~~~~~~L~~~Gilv~N 689 (772)
...||.|+.|...... ...++. -..+++.++++|+|||+|++.
T Consensus 126 --------------------~~~FD~i~~D~~~~~~------~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 126 --------------------DGHFDGILYDTYPLSE------ETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp --------------------TTCEEEEEECCCCCBG------GGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred --------------------ccCCceEEEeeeeccc------chhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 4679999998765421 112222 367899999999999999863
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-10 Score=112.54 Aligned_cols=108 Identities=13% Similarity=0.176 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc--------------
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------------- 129 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------------- 129 (772)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+ ..++++++++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CCCCceEEEccccchhhhhhcccccccccc
Confidence 46789999999999999999987 3 3579999999921 2357899999998764
Q ss_pred ----------cccCCCccEEEecccccccccCc-cc---hHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 130 ----------VFMDETFDVILDKGGLDALMEPE-LG---HKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 130 ----------~~~~~sfDvVi~~~~l~~l~~~~-~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.+++++||+|++.+++++..... +. ......+++++.++|||||+|++..+..+.
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 159 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQ 159 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTT
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCC
Confidence 03567999999988776531100 00 011345899999999999999997776443
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=8.3e-11 Score=123.92 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++....+ .+++|.++|+.+. +++++||+|+++..+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~--~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG--GTTCCEEEEEECCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh--cccCCccEEEECCCC
Confidence 5679999999999999999865 44579999999999999988775433 3699999999874 456799999997433
Q ss_pred ccccc-----------C-------ccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALME-----------P-------ELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~-----------~-------~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..... + +++......+++++.++|||||++++..
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 22100 0 0111336889999999999999998864
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=117.84 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhcc---------CCCCcEEEEeeccC-cc-cccCCC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVR---------DRSDMRWRVMDMTS-MQ-VFMDET 135 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~---------~~~~v~f~~~D~~~-l~-~~~~~s 135 (772)
++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.++++... ...++.++++|+.+ ++ .+++++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 567999999999999999998853 4799999999999999876543 23589999999987 43 256788
Q ss_pred ccEEEecccccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 136 FDVILDKGGLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|.|+....-.+...... .......+++++.++|+|||++++.+-.
T Consensus 129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 999874321111000000 0000147999999999999999997644
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=124.09 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=89.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccC------------CCC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD------------RSD 117 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~------------~~~ 117 (772)
.....+...+.. .++.+|||+|||+|.++..++.. |. .+|+++|+++.+++.|+++.... ..+
T Consensus 92 ~~~~~~l~~l~~---~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~ 168 (336)
T 2b25_A 92 KDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 168 (336)
T ss_dssp HHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred HHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCc
Confidence 334445555654 57899999999999999999987 54 57999999999999998876531 257
Q ss_pred cEEEEeeccCcc-cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 118 MRWRVMDMTSMQ-VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 118 v~f~~~D~~~l~-~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
+++.++|+.+.. .+++++||+|++.. ..+ ..+++++.++|||||++++.......+.
T Consensus 169 v~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~-------~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 226 (336)
T 2b25_A 169 VDFIHKDISGATEDIKSLTFDAVALDM-----LNP-------HVTLPVFYPHLKHGGVCAVYVVNITQVI 226 (336)
T ss_dssp EEEEESCTTCCC-------EEEEEECS-----SST-------TTTHHHHGGGEEEEEEEEEEESSHHHHH
T ss_pred eEEEECChHHcccccCCCCeeEEEECC-----CCH-------HHHHHHHHHhcCCCcEEEEEeCCHHHHH
Confidence 999999999862 15677899999742 121 2478999999999999998887655443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=118.30 Aligned_cols=108 Identities=14% Similarity=0.238 Sum_probs=88.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+.+||.||+|.|..+.++...+| ..+|++||+||.++++|++++ |+ +++++++++|+.+++......
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~----- 141 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV--EHKINFIESDAMLALDNLLQG----- 141 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHS-----
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhc-----
Confidence 3567999999999999999999887 689999999999999999998 55 568999999999998765310
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+|++|.+.. ....+|+.+.+.|+|||++++.
T Consensus 142 ---------------------~~~~~~fD~I~~d~~~~-------------~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 142 ---------------------QESEGSYDFGFVDADKP-------------NYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp ---------------------TTCTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cCCCCCcCEEEECCchH-------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 00125799999986432 1378999999999999999984
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=124.23 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..+++.+ ...++++|+ +.+++.++++....+ .+++|+++|+.+ + ++. .||+|++..
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-P-LPR-KADAIILSF 257 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-C-CSS-CEEEEEEES
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-C-CCC-CccEEEEcc
Confidence 467899999999999999998874 347999999 999999988765433 379999999986 3 444 499999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++++.+++ ..+++++++++|||||++++.++.
T Consensus 258 vl~~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 258 VLLNWPDHD-----AVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CGGGSCHHH-----HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccCCCHHH-----HHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999875532 568999999999999999998765
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-10 Score=117.52 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=91.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC-C-CcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~-~-~v~f~~~D~~~ 127 (772)
.....+...+.. .++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|+++....+ . ++++.++|+.+
T Consensus 80 ~~~~~i~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 80 KDAALIVAYAGI---SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred hHHHHHHHhhCC---CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 344456666654 67899999999999999999988 4 4579999999999999988865433 3 49999999996
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
. +++++||+|++. ..+ ...+++++.++|+|||++++......
T Consensus 157 ~--~~~~~~D~v~~~-----~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~ 198 (255)
T 3mb5_A 157 G--IEEENVDHVILD-----LPQ-------PERVVEHAAKALKPGGFFVAYTPCSN 198 (255)
T ss_dssp C--CCCCSEEEEEEC-----SSC-------GGGGHHHHHHHEEEEEEEEEEESSHH
T ss_pred c--cCCCCcCEEEEC-----CCC-------HHHHHHHHHHHcCCCCEEEEEECCHH
Confidence 4 577899999973 222 24689999999999999999876543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=109.77 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=88.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+||.||+|.|..+.++...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~------- 128 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL--NDRVEVRTGLALDSLQQIEN------- 128 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHH-------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh-------
Confidence 457999999999999999999988 789999999999999999987 54 56899999999998877541
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....||+|++|.... ....+|+.+.+.|+|||++++.-+
T Consensus 129 ---------------------~~~~~fD~v~~d~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 129 ---------------------EKYEPFDFIFIDADKQ-------------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp ---------------------TTCCCCSEEEECSCGG-------------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred ---------------------cCCCCcCEEEEcCCcH-------------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 0114699999976422 226899999999999999998743
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-10 Score=117.63 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=88.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+.+||.||+|+|..+.++...+| ..+|++||+++.+++.|++++ |+ +++++++++|+.+++......
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~l~~~----- 150 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKD----- 150 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHS-----
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHHHHHHHhc-----
Confidence 3567999999999999999999987 679999999999999999987 44 568999999999998765210
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+|++|.+..+ ...+|+.+.+.|+|||++++.
T Consensus 151 ---------------------~~~~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 151 ---------------------EKNHGSYDFIFVDADKDN-------------YLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp ---------------------GGGTTCBSEEEECSCSTT-------------HHHHHHHHHHHBCTTCCEEEE
T ss_pred ---------------------cCCCCCEEEEEEcCchHH-------------HHHHHHHHHHhCCCCeEEEEe
Confidence 000257999999865321 278999999999999999975
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-10 Score=116.29 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=87.2
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
.....+..++.. .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++....+ .+++++++|+.+
T Consensus 45 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (223)
T 3duw_A 45 TQGKFLQLLVQI---QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD 121 (223)
T ss_dssp HHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHh---hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 333444444333 35789999999999999999987 2 3479999999999999988875433 359999999976
Q ss_pred cc-ccc---CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 128 MQ-VFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 128 l~-~~~---~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.. .+. .++||+|+....... ...+++++.++|+|||++++....
T Consensus 122 ~~~~~~~~~~~~fD~v~~d~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 122 SLQQIENEKYEPFDFIFIDADKQN----------NPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp HHHHHHHTTCCCCSEEEECSCGGG----------HHHHHHHHHHTCCTTCEEEEESCS
T ss_pred HHHHHHhcCCCCcCEEEEcCCcHH----------HHHHHHHHHHhcCCCcEEEEeCCC
Confidence 42 111 267999997654221 568999999999999988876543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-10 Score=116.95 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=87.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
.....+..++.. .++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.++++....+ .+++++++|+.+
T Consensus 51 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 127 (225)
T 3tr6_A 51 EQAQLLALLVKL---MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127 (225)
T ss_dssp HHHHHHHHHHHH---HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHh---hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence 333444444433 35789999999999999999986 2 4579999999999999988875443 359999999966
Q ss_pred c-ccccC----CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 128 M-QVFMD----ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 128 l-~~~~~----~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
. +.+.. ++||+|+...... ....+++++.++|||||++++....
T Consensus 128 ~~~~~~~~~~~~~fD~v~~~~~~~----------~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 128 TLAELIHAGQAWQYDLIYIDADKA----------NTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp HHHHHHTTTCTTCEEEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HHHHhhhccCCCCccEEEECCCHH----------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 4 21221 7899999644311 1568999999999999999986544
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=122.68 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=87.3
Q ss_pred CeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 70 PQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++.... ..+++|..+|+.+ + ++ +.||+|++..+++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E-VP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C-CC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C-CC-CCCCEEEEchhcc
Confidence 89999999999999999887 3347999999 99999998776432 3479999999988 5 55 6899999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++.+++ ..+++++++++|+|||++++.+..
T Consensus 245 ~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 245 DLDEAA-----SLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp GCCHHH-----HHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 875532 569999999999999999998754
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.8e-10 Score=113.01 Aligned_cols=126 Identities=14% Similarity=0.141 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccC-CCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMD-ETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~-~sfDvVi~~ 142 (772)
.++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.|+++....+. ++++.++|..+. ++. +.||+|+..
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~--l~~~~~~D~Ivia 91 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA--FEETDQVSVITIA 91 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG--CCGGGCCCEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh--cccCcCCCEEEEc
Confidence 357899999999999999999986 35799999999999999988765553 599999999653 233 379998876
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 205 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~ 205 (772)
++-..+ +..++.+..+.|+++|+|++....+....+.++. ..+|.+.-..+-
T Consensus 92 G~Gg~~---------i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~--~~Gf~i~~e~lv 143 (225)
T 3kr9_A 92 GMGGRL---------IARILEEGLGKLANVERLILQPNNREDDLRIWLQ--DHGFQIVAESIL 143 (225)
T ss_dssp EECHHH---------HHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHH--HTTEEEEEEEEE
T ss_pred CCChHH---------HHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHH--HCCCEEEEEEEE
Confidence 654332 5789999999999999999987755444333333 237887776653
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-10 Score=116.77 Aligned_cols=105 Identities=17% Similarity=0.277 Sum_probs=88.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+||.||+|+|..+.++...+| ..+|++||+++.+++.|++++ |+ .++++++++|+.+++....
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~l~~~~-------- 132 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV--DQRVTLREGPALQSLESLG-------- 132 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHTCC--------
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHhcC--------
Confidence 467999999999999999999988 789999999999999999998 54 4689999999999887653
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
....||+|++|....+ ...+|+.+.+.|+|||++++.-+
T Consensus 133 ----------------------~~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 133 ----------------------ECPAFDLIFIDADKPN-------------NPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ----------------------SCCCCSEEEECSCGGG-------------HHHHHHHHHHTCCTTCEEEEECC
T ss_pred ----------------------CCCCeEEEEECCchHH-------------HHHHHHHHHHhcCCCeEEEEeCC
Confidence 1247999999764221 26799999999999999998644
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-09 Score=120.35 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=95.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l 128 (772)
.+...+.... . .++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++...+. +++|.++|+.++
T Consensus 205 ~la~~l~~~~-~---~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 205 SIANAMIELA-E---LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHH-T---CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHHhh-c---CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 4444455555 3 5788999999999999999999864 3699999999999999988765553 799999999999
Q ss_pred ccccCCCccEEEecccccccccCc-cchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 129 QVFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~-~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
+ +++++||+|+++..+..-.... .-......+++++.++| ||.+++++.....+.
T Consensus 281 ~-~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~ 336 (373)
T 3tm4_A 281 S-QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIE 336 (373)
T ss_dssp G-GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHH
T ss_pred C-cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHH
Confidence 8 7889999999977655432211 11233578999999999 666666665544433
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-10 Score=113.16 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=87.7
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC------CeEEEEeCCHHHHHHHHHHhccC------CCCcEE
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF------HGITNVDFSKVVISDMLRRNVRD------RSDMRW 120 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~------~~V~gvDiS~~~I~~a~~~~~~~------~~~v~f 120 (772)
....+...+.. ...++.+|||+|||+|.++..++.... .+|+++|+++.+++.++++.... ..++++
T Consensus 66 ~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 144 (227)
T 2pbf_A 66 MHALSLKRLIN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKI 144 (227)
T ss_dssp HHHHHHHHHTT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEE
T ss_pred HHHHHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEE
Confidence 34445555531 115678999999999999999988742 47999999999999998876543 357999
Q ss_pred EEeeccCccc---ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 121 RVMDMTSMQV---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 121 ~~~D~~~l~~---~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.++|+.+... ...++||+|++...++++ ++++.++|||||++++....
T Consensus 145 ~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 145 IHKNIYQVNEEEKKELGLFDAIHVGASASEL-------------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp EECCGGGCCHHHHHHHCCEEEEEECSBBSSC-------------CHHHHHHEEEEEEEEEEEEE
T ss_pred EECChHhcccccCccCCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEcc
Confidence 9999987420 245789999998877654 36788999999999987643
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-10 Score=115.72 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=88.2
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC------CeEEEEeCCHHHHHHHHHHhccC------CCCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRD------RSDM 118 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~------~~V~gvDiS~~~I~~a~~~~~~~------~~~v 118 (772)
.+...+.+.+.. ...++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.++++.... ..++
T Consensus 69 ~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 147 (227)
T 1r18_A 69 HMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147 (227)
T ss_dssp HHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence 344445555531 1157789999999999999999885 42 47999999999999998876433 3579
Q ss_pred EEEEeeccCcccccC-CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 119 RWRVMDMTSMQVFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 119 ~f~~~D~~~l~~~~~-~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++.++|+.+ . +++ ++||+|++...++++. +++.++|||||++++....
T Consensus 148 ~~~~~d~~~-~-~~~~~~fD~I~~~~~~~~~~-------------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 148 LIVEGDGRK-G-YPPNAPYNAIHVGAAAPDTP-------------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEESCGGG-C-CGGGCSEEEEEECSCBSSCC-------------HHHHHTEEEEEEEEEEESC
T ss_pred EEEECCccc-C-CCcCCCccEEEECCchHHHH-------------HHHHHHhcCCCEEEEEEec
Confidence 999999988 3 444 7899999988877652 5789999999999988654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=122.76 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcE-EEEeeccCcc--cccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMR-WRVMDMTSMQ--VFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~-f~~~D~~~l~--~~~~~sfDvVi~~~~ 144 (772)
++.+|||+|||||.++..|++.|..+|+|+|+|+.|++.+.++. +++. +...|+..++ .++..+||+|++..+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD----DRVRSMEQYNFRYAEPVDFTEGLPSFASIDVS 160 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC----TTEEEECSCCGGGCCGGGCTTCCCSEEEECCS
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cccceecccCceecchhhCCCCCCCEEEEEee
Confidence 56799999999999999999998878999999999998754322 2332 2233444433 134456999998777
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+.++ ..+|.+++|+|||||+++++
T Consensus 161 f~sl----------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 161 FISL----------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp SSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred HhhH----------HHHHHHHHHHcCcCCEEEEE
Confidence 7654 47999999999999999987
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.3e-10 Score=113.18 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=89.5
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCccccc
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~ 132 (772)
..+...+.. .++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.++++..... .++++..+|+.+.. ++
T Consensus 81 ~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~ 155 (248)
T 2yvl_A 81 FYIALKLNL---NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VP 155 (248)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CC
T ss_pred HHHHHhcCC---CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cC
Confidence 345555544 57889999999999999999988 4579999999999999988775443 57999999998854 36
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++.||+|++.. .+ ...+++++.++|+|||++++......
T Consensus 156 ~~~~D~v~~~~-----~~-------~~~~l~~~~~~L~~gG~l~~~~~~~~ 194 (248)
T 2yvl_A 156 EGIFHAAFVDV-----RE-------PWHYLEKVHKSLMEGAPVGFLLPTAN 194 (248)
T ss_dssp TTCBSEEEECS-----SC-------GGGGHHHHHHHBCTTCEEEEEESSHH
T ss_pred CCcccEEEECC-----cC-------HHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 77899999732 12 24688999999999999999887543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=119.02 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=84.6
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~----g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~ 125 (772)
+.....+..++.. .++.+|||+|||+|..+..|++. + ..+|+++|+|+.+++.++ . ...+++++++|+
T Consensus 67 p~~~~~l~~~l~~---~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-~---~~~~v~~~~gD~ 139 (236)
T 2bm8_A 67 PDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-S---DMENITLHQGDC 139 (236)
T ss_dssp HHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-G---GCTTEEEEECCS
T ss_pred HHHHHHHHHHHHh---cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-c---cCCceEEEECcc
Confidence 3444455555543 24679999999999999999886 2 357999999999988775 1 236899999999
Q ss_pred cCc---ccccC-CCccEEEecccccccccCccchHHHHHHHHHHHh-ccccCeEEEEEEc
Q 004133 126 TSM---QVFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCLTL 180 (772)
Q Consensus 126 ~~l---~~~~~-~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~r-vLkpGG~~ii~~~ 180 (772)
.+. + +.. .+||+|+.... + . . ...++.++.+ +|||||++++.++
T Consensus 140 ~~~~~l~-~~~~~~fD~I~~d~~-~-~---~-----~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 140 SDLTTFE-HLREMAHPLIFIDNA-H-A---N-----TFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SCSGGGG-GGSSSCSSEEEEESS-C-S---S-----HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred hhHHHHH-hhccCCCCEEEECCc-h-H---h-----HHHHHHHHHHhhCCCCCEEEEEeC
Confidence 984 5 333 47999987554 2 1 1 5789999997 9999999999754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.7e-10 Score=116.98 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=85.4
Q ss_pred CCeEEEEcCCC--chhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc-----ccCCCcc-
Q 004133 69 PPQILVPGCGN--SRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV-----FMDETFD- 137 (772)
Q Consensus 69 ~~~ILDlGCG~--G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~-----~~~~sfD- 137 (772)
..+|||||||+ +.++..++.. +..+|+++|.|+.||+.+++++.... .+++|+++|+.++.. ...+.||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence 46999999997 4444555443 34579999999999999998875432 369999999998630 1135566
Q ss_pred ----EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 138 ----VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 138 ----vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.|+++.+|||+.+.++ ...+++++.+.|+|||+|++.++..+
T Consensus 159 ~~p~av~~~avLH~l~d~~~----p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 159 TRPVALTVIAIVHFVLDEDD----AVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TSCCEEEEESCGGGSCGGGC----HHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred CCcchHHhhhhHhcCCchhh----HHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 6889999999987542 36899999999999999999987754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=115.40 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=86.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHH-hhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVR-EMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~-~~~~~~~~~~~~~ 619 (772)
.+.+||.||+|.|.++.++...+|..+|++||+++.+++.|++++.-. ..++++++.+|+.+++. ...
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---------- 140 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVND---------- 140 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTT----------
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhcc----------
Confidence 467999999999999999999888889999999999999999987211 14689999999998876 532
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.+||+|++|....+ ...+|+.+.+.|+|||+|+++
T Consensus 141 ----------------------~~fD~V~~~~~~~~-------------~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 141 ----------------------KVYDMIFIDAAKAQ-------------SKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ----------------------SCEEEEEEETTSSS-------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred ----------------------CCccEEEEcCcHHH-------------HHHHHHHHHHhcCCCeEEEEe
Confidence 56999999864331 267999999999999999984
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-10 Score=120.83 Aligned_cols=122 Identities=15% Similarity=0.041 Sum_probs=90.1
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~ 132 (772)
.+...+.. .++.+|||+|||+|..+..++.. +...|+++|+|+.+++.++++....+ .+++++++|+.+++ ..
T Consensus 109 l~~~~l~~---~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~-~~ 184 (315)
T 1ixk_A 109 YPPVALDP---KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-EL 184 (315)
T ss_dssp HHHHHHCC---CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GG
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc-cc
Confidence 34455554 57889999999999999999986 23579999999999999988875433 37999999999987 45
Q ss_pred CCCccEEEecc------cccccccCc--cc-------hHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 133 DETFDVILDKG------GLDALMEPE--LG-------HKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 133 ~~sfDvVi~~~------~l~~l~~~~--~~-------~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++||+|++.. ++....+.. .. ......+++++.++|||||++++.+.+
T Consensus 185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 67899999742 232111100 00 011368999999999999999998765
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-10 Score=123.72 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||||||+|.++...++.|.++|++||.|+ |++.|++....++ ..++++.+|++++. ++ +.||+|++..+-
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE-LP-EQVDAIVSEWMG 159 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEECCCCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec-CC-ccccEEEeeccc
Confidence 5789999999999999999999988999999997 7888877665443 46999999999998 55 789999986655
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
..+..... +..++....|+|||||+++
T Consensus 160 ~~l~~e~~----l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 160 YGLLHESM----LSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TTBTTTCS----HHHHHHHHHHHEEEEEEEE
T ss_pred ccccccch----hhhHHHHHHhhCCCCceEC
Confidence 55544321 6788888899999999876
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-10 Score=120.38 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeeccCcccc--cCCCccEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQVF--MDETFDVI 139 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~-----~~~~~v~f~~~D~~~l~~~--~~~sfDvV 139 (772)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++. ...++++++++|+.++. . .+++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~~~fDvI 173 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFV-RQTPDNTYDVV 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH-HSSCTTCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHH-HhccCCceeEE
Confidence 5689999999999999999987 45689999999999999987652 12468999999998865 3 47899999
Q ss_pred EecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++........... -....++++++++|||||++++..-.
T Consensus 174 i~d~~~~~~~~~~---l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 174 IIDTTDPAGPASK---LFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEECC------------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EECCCCccccchh---hhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9865543321110 00158999999999999999987543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=118.92 Aligned_cols=123 Identities=17% Similarity=0.046 Sum_probs=90.2
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccc-
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVF- 131 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~- 131 (772)
.+..++.. .++.+|||+|||+|..+..++.. +...|+++|+|+.+++.++++....+ .++++.++|+.+++ .
T Consensus 74 l~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~-~~ 149 (274)
T 3ajd_A 74 IPPIVLNP---REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYK-DY 149 (274)
T ss_dssp HHHHHHCC---CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHH-HH
T ss_pred HHHHHhCC---CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcc-hh
Confidence 34455554 57889999999999999999884 43579999999999999988875544 37999999999876 3
Q ss_pred ---cCCCccEEEeccccccc---cc-Ccc-------chHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 132 ---MDETFDVILDKGGLDAL---ME-PEL-------GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 132 ---~~~sfDvVi~~~~l~~l---~~-~~~-------~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
..++||+|++....... .. +.. ......++++++.++|||||++++.+.+-
T Consensus 150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 150 LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 26789999976322111 00 000 00014789999999999999999987653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=113.91 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-ccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~~~~sfDvVi~~ 142 (772)
++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.++++....+ .+++++++|+.+. + ..++ ||+|+..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~-fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA-GQRD-IDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT-TCCS-EEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc-cCCC-CCEEEEc
Confidence 4679999999999999999886 2 3579999999999999987764332 3689999999874 4 3456 9999876
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
... .. ...+++++.++|||||++++..
T Consensus 134 ~~~-----~~-----~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CDV-----FN-----GADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TTT-----SC-----HHHHHHHHGGGEEEEEEEEEES
T ss_pred CCh-----hh-----hHHHHHHHHHhcCCCeEEEEEC
Confidence 321 11 5789999999999999998854
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-10 Score=119.24 Aligned_cols=107 Identities=12% Similarity=0.262 Sum_probs=88.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+||.||+|+|..+.+|...+| ..+|++||++|.+++.|++++ |+ .++++++++|+.+++......
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l~~~~~~------ 131 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ--EHKIKLRLGPALDTLHSLLNE------ 131 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC--TTTEEEEESCHHHHHHHHHHH------
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHhhc------
Confidence 457999999999999999999886 779999999999999999998 54 468999999999998775210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
.....||+|++|....+ ...+|+.+.+.|+|||++++.-
T Consensus 132 ---------------------~~~~~fD~V~~d~~~~~-------------~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 132 ---------------------GGEHQFDFIFIDADKTN-------------YLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp ---------------------HCSSCEEEEEEESCGGG-------------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred ---------------------cCCCCEeEEEEcCChHH-------------hHHHHHHHHHhcCCCeEEEEEC
Confidence 00257999999875221 2678999999999999999853
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=113.52 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc---cCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF---MDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~---~~~sfDvVi~~~ 143 (772)
.++.+|||+|||. +++|+|+.|++.|+++... +++|.++|+.+++ + ++++||+|++..
T Consensus 11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~-~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLL-QSAHKESSFDIILSGL 71 (176)
T ss_dssp CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGG-GGCCCSSCEEEEEECC
T ss_pred CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCc-cccCCCCCEeEEEECC
Confidence 6789999999996 2399999999999887632 4999999999998 6 789999999999
Q ss_pred ccccc-ccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 144 GLDAL-MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 144 ~l~~l-~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++++ .+ ...++++++|+|||||++++..
T Consensus 72 ~l~~~~~~-------~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 72 VPGSTTLH-------SAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp STTCCCCC-------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcccC-------HHHHHHHHHHHCCCCEEEEEEc
Confidence 99998 44 3689999999999999999853
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-09 Score=115.63 Aligned_cols=103 Identities=8% Similarity=0.022 Sum_probs=86.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|++++...+ .++.|+++|+.+.+ . .++||+|+....
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~-~~~~D~Vi~d~p 195 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-L-KDVADRVIMGYV 195 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-C-TTCEEEEEECCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-c-cCCceEEEECCc
Confidence 46789999999999999999987 34579999999999999988775544 47899999999885 4 678999998654
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
. . ...++.++.++|+|||++++..+..
T Consensus 196 ~----~-------~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 196 H----K-------THKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp S----S-------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred c----c-------HHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 3 1 3568899999999999999887664
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.5e-11 Score=121.96 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc----CCCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR----DRSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~----~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
++.+|||+|||+|.++..+++.|..+|+|+|+|+.|++.++++... ...++.+... .++ +...||.+....
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~d~~~~D~ 111 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVL--ADF---EQGRPSFTSIDV 111 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCG--GGC---CSCCCSEEEECC
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCH--hHc---CcCCCCEEEEEE
Confidence 4679999999999999999999876899999999999987654321 0112222221 111 111244443333
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++..+ ..++++++|+|||||++++..
T Consensus 112 v~~~l----------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 112 SFISL----------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp SSSCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred EhhhH----------HHHHHHHHHhccCCCEEEEEE
Confidence 33333 369999999999999999863
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-10 Score=123.33 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhc--cCCCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~--~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+..+|||+|||+|.++..+++.. ..+++++|+++ ++. +++.. ....+++|+.+|+. .+ ++ +||+|++..
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~~~~~~~~~~~~v~~~~~d~~-~~-~p--~~D~v~~~~ 255 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--RHRLDAPDVAGRWKVVEGDFL-RE-VP--HADVHVLKR 255 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--TCCCCCGGGTTSEEEEECCTT-TC-CC--CCSEEEEES
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--cccccccCCCCCeEEEecCCC-CC-CC--CCcEEEEeh
Confidence 467899999999999999998863 34699999954 444 22221 22347999999998 34 45 899999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++++.+++ ..++|++++++|||||++++.+..
T Consensus 256 vlh~~~d~~-----~~~~L~~~~~~LkpgG~l~i~e~~ 288 (348)
T 3lst_A 256 ILHNWGDED-----SVRILTNCRRVMPAHGRVLVIDAV 288 (348)
T ss_dssp CGGGSCHHH-----HHHHHHHHHHTCCTTCEEEEEECC
T ss_pred hccCCCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 999986643 579999999999999999998754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.2e-10 Score=122.85 Aligned_cols=132 Identities=13% Similarity=0.027 Sum_probs=94.3
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~ 125 (772)
||.+.......+..++ .++.+|||+|||+|.++..++..|.. |+++|+|+.+++.+++++...+....+.++|+
T Consensus 197 ~f~dqr~~r~~l~~~~-----~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~ 270 (393)
T 4dmg_A 197 YYLDQRENRRLFEAMV-----RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEA 270 (393)
T ss_dssp SCGGGHHHHHHHHTTC-----CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCH
T ss_pred cCCCHHHHHHHHHHHh-----cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccH
Confidence 4444444455555544 35789999999999999999998875 99999999999999888765555557889999
Q ss_pred cCcccccCCCccEEEecccccccccCc--cchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 126 TSMQVFMDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 126 ~~l~~~~~~sfDvVi~~~~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.+......+.||+|++......-.... ........++..+.++|+|||++++.+.+..
T Consensus 271 ~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 271 LPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp HHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 875312234499999764432111100 0011257899999999999999998877643
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.2e-10 Score=111.53 Aligned_cols=100 Identities=18% Similarity=0.292 Sum_probs=84.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+||.||+|+|..+.++...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++....
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~-------- 125 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL--IDRVELQVGDPLGIAAGQR-------- 125 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG--GGGEEEEESCHHHHHTTCC--------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CceEEEEEecHHHHhccCC--------
Confidence 457999999999999999999887 789999999999999999887 44 4689999999998865432
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
. ||+|++|.... ....+++.+.+.|+|||++++.
T Consensus 126 ------------------------~-fD~v~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 126 ------------------------D-IDILFMDCDVF-------------NGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp ------------------------S-EEEEEEETTTS-------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred ------------------------C-CCEEEEcCChh-------------hhHHHHHHHHHhcCCCeEEEEE
Confidence 5 99999985322 1378999999999999999984
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-10 Score=122.18 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++ ..++++|+.+|+.+ + ++++ |+|++..++
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~-~-~p~~--D~v~~~~vl 271 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-----AFSGVEHLGGDMFD-G-VPKG--DAIFIKWIC 271 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-C-CCCC--SEEEEESCG
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-----hcCCCEEEecCCCC-C-CCCC--CEEEEechh
Confidence 45689999999999999999886 3347999999 88886553 23689999999987 6 6654 999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|++.+++ ..++|++++++|||||++++.++.
T Consensus 272 h~~~~~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 272 HDWSDEH-----CLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp GGBCHHH-----HHHHHHHHHHHSCTTCEEEEEECC
T ss_pred hcCCHHH-----HHHHHHHHHHHcCCCCEEEEEEec
Confidence 9886543 678999999999999999998764
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-09 Score=109.16 Aligned_cols=103 Identities=16% Similarity=0.122 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||.|.++..+. +...|+++||++.+++.+++.....+.+..+.++|....+ +.++||+|+..-+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~--~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP--PAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC--CCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC--CCCCcchHHHHHHHH
Confidence 357899999999999999887 5557999999999999999887666788999999999877 445999999998999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++...+. ...+ .+...|+++|+++-..
T Consensus 180 ~LE~q~~-----~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQA-----GSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHST-----THHH-HHHHHCBCSEEEEEEE
T ss_pred Hhhhhch-----hhHH-HHHHHhcCCCEEEEcC
Confidence 8866442 2333 7888999999988764
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-10 Score=123.30 Aligned_cols=132 Identities=19% Similarity=0.087 Sum_probs=94.9
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC---CcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~---~v~f~~ 122 (772)
+|.+.......+..++ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++...+. +++|++
T Consensus 195 ff~~~~~~~~~~~~~~-----~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~ 269 (385)
T 2b78_A 195 IFLDQRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 269 (385)
T ss_dssp SCGGGHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred cCCcHHHHHHHHHHHh-----cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 4444445555566554 25689999999999999999998877899999999999999888765442 799999
Q ss_pred eeccCc-ccc--cCCCccEEEecccccccc--cCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 123 MDMTSM-QVF--MDETFDVILDKGGLDALM--EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 123 ~D~~~l-~~~--~~~sfDvVi~~~~l~~l~--~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.+. +.+ ...+||+|++........ ........+..++..+.++|+|||++++.+...
T Consensus 270 ~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 270 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999873 211 245899999754432110 001111226678899999999999999887654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-09 Score=105.74 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=88.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+||.||+|.|..+.++...+| ..+|++||+++.+++.|++.+ |+ .++++++.+|+.+++.....
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~------- 134 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL--SDKIGLRLSPAKDTLAELIH------- 134 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHT-------
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeCCHHHHHHHhhh-------
Confidence 457999999999999999999887 789999999999999999998 54 46799999999999876541
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
......||+|++|.... ....+++.+.+.|+|||+|++.-+
T Consensus 135 --------------------~~~~~~fD~v~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 135 --------------------AGQAWQYDLIYIDADKA-------------NTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp --------------------TTCTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred --------------------ccCCCCccEEEECCCHH-------------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 00125799999976422 126799999999999999998643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=115.16 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=89.1
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCccc
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQV 130 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~ 130 (772)
..+...+.. .++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.++++..... .++++.++|+.+.
T Consensus 102 ~~i~~~~~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 176 (277)
T 1o54_A 102 SFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-- 176 (277)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--
T ss_pred HHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--
Confidence 344445543 57889999999999999999987 4 4589999999999999988775544 3789999999875
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++++||+|++.. .. ...+++++.++|+|||++++.+....
T Consensus 177 ~~~~~~D~V~~~~-----~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (277)
T 1o54_A 177 FDEKDVDALFLDV-----PD-------PWNYIDKCWEALKGGGRFATVCPTTN 217 (277)
T ss_dssp CSCCSEEEEEECC-----SC-------GGGTHHHHHHHEEEEEEEEEEESSHH
T ss_pred ccCCccCEEEECC-----cC-------HHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 4667899999732 22 24789999999999999999887543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-10 Score=110.19 Aligned_cols=108 Identities=23% Similarity=0.225 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC---------CeEEEEeCCHHHHHHHHHHhccCCCCcEEE-EeeccCcc------
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF---------HGITNVDFSKVVISDMLRRNVRDRSDMRWR-VMDMTSMQ------ 129 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~---------~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~-~~D~~~l~------ 129 (772)
.++.+|||+|||+|.++..+++. |. .+|+++|+|+.+ ...++++. ++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cCCCCeEEEeccCCCHHHHHHHH
Confidence 46789999999999999999987 53 579999999821 12468899 99988754
Q ss_pred -cccCCCccEEEeccccccccc----CccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 130 -VFMDETFDVILDKGGLDALME----PELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 130 -~~~~~sfDvVi~~~~l~~l~~----~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.+++++||+|++...+++... ..........+++++.++|||||++++.++....
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 150 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 024568999999776554221 1000111358999999999999999999886554
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-10 Score=119.91 Aligned_cols=117 Identities=11% Similarity=0.043 Sum_probs=88.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
....++..++.. .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++....+ .+++++++|+.+
T Consensus 47 ~~~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 123 (242)
T 3r3h_A 47 EQAQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123 (242)
T ss_dssp HHHHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 344444444433 35689999999999999999985 2 3579999999999999988775443 479999999977
Q ss_pred ccccc-----CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 128 MQVFM-----DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 128 l~~~~-----~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..... +++||+|+...... . ...+++++.++|||||++++....
T Consensus 124 ~l~~~~~~~~~~~fD~V~~d~~~~-----~-----~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 124 TLHSLLNEGGEHQFDFIFIDADKT-----N-----YLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp HHHHHHHHHCSSCEEEEEEESCGG-----G-----HHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HHHHHhhccCCCCEeEEEEcCChH-----H-----hHHHHHHHHHhcCCCeEEEEECCc
Confidence 53011 58999998755311 1 567999999999999999986543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.00 E-value=8e-10 Score=113.71 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=88.8
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMT 126 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~ 126 (772)
+.....+..++.. .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++....+. ++++.++|+.
T Consensus 46 ~~~~~~l~~l~~~---~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (239)
T 2hnk_A 46 PEEGQFLNILTKI---SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL 122 (239)
T ss_dssp HHHHHHHHHHHHH---HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHh---hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence 3444555555543 46789999999999999999987 2 45899999999999999888754332 4899999987
Q ss_pred Cc-cc-------------ccC--CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 127 SM-QV-------------FMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 127 ~l-~~-------------~~~--~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+. +. |++ ++||+|++...... ...+++++.++|+|||++++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~----------~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 123 ETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN----------YPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp HHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG----------HHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH----------HHHHHHHHHHHcCCCeEEEEEcc
Confidence 63 21 222 78999997653221 46899999999999999998763
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.5e-09 Score=113.72 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=104.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCC------CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGF------HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~------~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
.++.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.+....+.++.+.++|+.... ..+.||+|+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~--~~~~fD~Ii 206 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--LVDPVDVVI 206 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--CCCCEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc--ccCCccEEE
Confidence 3568999999999999998887631 47999999999999998876544457899999987743 567899999
Q ss_pred ecccccccccCcc----------ch-HHHHHHHHHHHhccccCeEEEEEEcCc---hhhhhcccccc-cCCcEEEEEEcC
Q 004133 141 DKGGLDALMEPEL----------GH-KLGNQYLSEVKRLLKSGGKFVCLTLAE---SHVLGLLFPKF-RFGWKMSVHAIP 205 (772)
Q Consensus 141 ~~~~l~~l~~~~~----------~~-~~~~~~l~ei~rvLkpGG~~ii~~~~~---~~~~~~l~~~~-~~~w~~~~~~~~ 205 (772)
++..+.++..++. +. .....+++.+.+.|+|||++++++... ......+.+.+ ..+|...+..++
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~lp 286 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP 286 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeCC
Confidence 9988766532110 00 012368999999999999998887221 00011122221 124544455554
Q ss_pred CCCCCCCCcceEEEEEEecCC
Q 004133 206 QKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 206 ~~~~~~~~l~~f~~~~~K~~~ 226 (772)
...-.....+..+.+++|.+.
T Consensus 287 ~~~F~~~~~~~~i~vl~k~~~ 307 (344)
T 2f8l_A 287 ETLFKSEQARKSILILEKADV 307 (344)
T ss_dssp GGGSCC-CCCEEEEEEEECCT
T ss_pred hhhccCCCCceEEEEEECCCC
Confidence 321122345667777777553
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.3e-10 Score=115.07 Aligned_cols=102 Identities=15% Similarity=0.040 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-ccc-----cCCCcc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QVF-----MDETFD 137 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~-----~~~sfD 137 (772)
++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.++++....+ .+++++++|+.+. +.+ .+++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 5679999999999999999886 2 3479999999999999988775443 3699999999764 312 267999
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+|+...... . ...+++++.++|||||++++..
T Consensus 159 ~V~~d~~~~-----~-----~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDADKD-----N-----YLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSCST-----T-----HHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCchH-----H-----HHHHHHHHHHhCCCCeEEEEec
Confidence 999754311 1 5789999999999999998764
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-10 Score=122.10 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|||+|||+|.++..+++.. ...++++|+ +.+++.+++ .++++|+++|+.+ + ++. ||+|++..++
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~-~~~--~D~v~~~~~l 277 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-----LSGIEHVGGDMFA-S-VPQ--GDAMILKAVC 277 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----CTTEEEEECCTTT-C-CCC--EEEEEEESSG
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-----cCCCEEEeCCccc-C-CCC--CCEEEEeccc
Confidence 456899999999999999999874 346899999 888876632 3579999999988 6 564 9999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++.+++ ...+|++++++|||||++++.++.
T Consensus 278 h~~~d~~-----~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 278 HNWSDEK-----CIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCHHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 9886533 569999999999999999998754
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=119.10 Aligned_cols=101 Identities=19% Similarity=0.073 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++ ..++++|+.+|+.+ + ++.+ |+|++..++
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~D~~~-~-~p~~--D~v~~~~vl 269 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-----QFPGVTHVGGDMFK-E-VPSG--DTILMKWIL 269 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----CCTTEEEEECCTTT-C-CCCC--SEEEEESCG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-----hcCCeEEEeCCcCC-C-CCCC--CEEEehHHh
Confidence 46789999999999999999886 3347999999 87876553 23689999999998 6 6754 999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|++.+++ ..++|++++++|||||++++.++..
T Consensus 270 h~~~d~~-----~~~~L~~~~~~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 270 HDWSDQH-----CATLLKNCYDALPAHGKVVLVQCIL 301 (364)
T ss_dssp GGSCHHH-----HHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred ccCCHHH-----HHHHHHHHHHHcCCCCEEEEEEecc
Confidence 9886543 6799999999999999999987653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=118.48 Aligned_cols=108 Identities=14% Similarity=0.222 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCc-ccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l-~~~~~~sfDvVi 140 (772)
.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++.. ..++++++++|+.+. +.+++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 4679999999999999999987 346899999999999999887642 246899999999874 213467999999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+......... + ......+++++.++|+|||++++.
T Consensus 200 ~d~~~p~~~~-~--~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 200 VDSSDPIGPA-K--ELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp ECCCCTTSGG-G--GGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCccCcc-h--hhhHHHHHHHHHHhcCCCcEEEEe
Confidence 8553211111 1 001368999999999999999986
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=117.23 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=85.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc------CCCCcEEEEeeccCc-ccccCCCccEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QVFMDETFDVI 139 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~------~~~~v~f~~~D~~~l-~~~~~~sfDvV 139 (772)
.+.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++.. ..++++++++|+.+. + ..+++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE-RTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH-HCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH-hcCCCccEE
Confidence 4579999999999999999987 456899999999999999887632 146899999999873 4 456899999
Q ss_pred EecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++....+.........-....++++++++|||||++++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 98765433000000000036899999999999999998753
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=115.76 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc------------CCCCcEEEEeeccCcccccCCC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR------------DRSDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~------------~~~~v~f~~~D~~~l~~~~~~s 135 (772)
.+.+|||+|||+|.++..+++.+..+|+++|+++.+++.|++++ . ..++++++++|+.+.... +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 46799999999999999999886668999999999999998876 2 245799999998764202 678
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
||+|++..... ...+.. .....+++++.++|+|||++++..
T Consensus 153 fD~Ii~d~~~~-~~~~~~--l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDP-VGPAKV--LFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCC-C-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCC-CCcchh--hhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99999755432 111000 002678999999999999999875
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-09 Score=114.13 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCc-ccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l-~~~~~~sfDvVi 140 (772)
.+.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++.+.. ..++++++++|+.+. + ..+++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA-KSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH-TCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-hCCCCeeEEE
Confidence 4689999999999999999987 667899999999999999876522 246899999999873 3 3467899999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+........... -....+++++.++|+|||++++....
T Consensus 154 ~d~~~~~~~~~~---l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDSTEPVGPAVN---LFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCSSCCSCCCC---CSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCCCCCCcchh---hhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 855432211100 00257999999999999999987543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-10 Score=122.12 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc---CCCCcEEE--EeeccCcccccCCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---DRSDMRWR--VMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~---~~~~v~f~--~~D~~~l~~~~~~sfDvVi~ 141 (772)
.++.+|||+|||+|.++..+++. ..|+|+|+|+ |+..++++... ...++.|+ ++|+.+++ +++||+|++
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD~Vvs 154 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME---PFQADTVLC 154 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC---CCCCSEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC---CCCcCEEEE
Confidence 57889999999999999999988 4699999999 54333211100 01168999 99998865 679999999
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCe--EEEEEEcC
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGG--KFVCLTLA 181 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG--~~ii~~~~ 181 (772)
... ++......+......+|+++.++||||| .|++..+.
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 766 3322211000001247899999999999 99998877
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-10 Score=121.56 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++|..+|+.+ + ++. ||+|++..++
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~-~p~--~D~v~~~~~l 256 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-----SNNLTYVGGDMFT-S-IPN--ADAVLLKYIL 256 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-----BTTEEEEECCTTT-C-CCC--CSEEEEESCG
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-----CCCcEEEeccccC-C-CCC--ccEEEeehhh
Confidence 35689999999999999999987 3347999999 988876643 2469999999987 5 553 9999999999
Q ss_pred cccccCccchHHHHHHHHHHHhcccc---CeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKS---GGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkp---GG~~ii~~~~ 181 (772)
+++.+++ ..++|++++++||| ||++++.++.
T Consensus 257 h~~~d~~-----~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 257 HNWTDKD-----CLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp GGSCHHH-----HHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred ccCCHHH-----HHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 9986532 56999999999999 9999998754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-09 Score=120.50 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=95.2
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC---CcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS---DMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~---~v~f~~ 122 (772)
||.........+..+ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++...+. +++|++
T Consensus 204 ff~~~~~~~~~l~~~------~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~ 277 (396)
T 3c0k_A 204 YYLDQRDSRLATRRY------VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277 (396)
T ss_dssp SCGGGHHHHHHHHHH------CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cCcCHHHHHHHHHHh------hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence 454444444445544 25789999999999999999998877899999999999999888765544 789999
Q ss_pred eeccCcc-cc--cCCCccEEEecccccccccCc--cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 123 MDMTSMQ-VF--MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 123 ~D~~~l~-~~--~~~sfDvVi~~~~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.+.. .+ ..++||+|+............ ........++.++.++|+|||++++.+...
T Consensus 278 ~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 278 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9998863 01 146899999864332111000 001226789999999999999999887654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=129.81 Aligned_cols=129 Identities=17% Similarity=0.086 Sum_probs=96.3
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
||.+.......+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .+++|++
T Consensus 523 ~f~d~r~~r~~l~~~~------~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~ 596 (703)
T 3v97_A 523 LFLDHRIARRMLGQMS------KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQ 596 (703)
T ss_dssp CCGGGHHHHHHHHHHC------TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEE
T ss_pred CcccHHHHHHHHHHhc------CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEe
Confidence 5555555555555543 468999999999999999998888789999999999999988876554 3599999
Q ss_pred eeccCc-ccccCCCccEEEecccccccccC----ccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 123 MDMTSM-QVFMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 123 ~D~~~l-~~~~~~sfDvVi~~~~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+.+. + ...++||+|++.......... .........++..+.++|+|||++++.+..
T Consensus 597 ~D~~~~l~-~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 597 ADCLAWLR-EANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SCHHHHHH-HCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCHHHHHH-hcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 999883 4 456799999975532211100 011123778999999999999999977654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=117.30 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccC-cccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTS-MQVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~-l~~~~~~sfDvVi 140 (772)
.+.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++.. ..++++++++|+.+ ++ ..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~-~~~~~fD~Ii 173 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK-QNQDAFDVII 173 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH-TCSSCEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh-hCCCCceEEE
Confidence 4689999999999999999987 346899999999999999887643 25689999999987 34 4568899999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+......... . ......+++++.++|+|||++++..
T Consensus 174 ~d~~~~~~~~-~--~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPA-E--SLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC--------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcc-h--hhhHHHHHHHHHhccCCCeEEEEec
Confidence 8544321110 0 0013578999999999999999876
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.6e-10 Score=122.89 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcc-cc--cCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ-VF--MDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~-~~--~~~sfDvVi~~ 142 (772)
++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++...+. +++|+++|+.+.. .+ ..++||+|+..
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 5789999999999999999998877899999999999999888765543 7999999998753 01 25789999975
Q ss_pred ccccccccCc--cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 143 GGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 143 ~~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.......... ........++.++.++|+|||++++++...
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 4332211100 000226789999999999999999888764
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=115.25 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-----CCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-----~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++.+... .++++++++|+.+.....+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 5689999999999999999887 3568999999999999998876432 468999999998742133678999998
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
........... .....+++.+.++|+|||++++...
T Consensus 158 d~~~~~~~~~~---l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSDPIGPAET---LFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCCTTTGGGG---GSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchh---hhHHHHHHHHHHhcCCCcEEEEECC
Confidence 55432211110 0016899999999999999998753
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=110.18 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=87.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+.+||.||+|.|.++..+...+| ..+|++||+++.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~~~~~~~------ 139 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALETLDELLA------ 139 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHH------
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CCeEEEEEcCHHHHHHHHHh------
Confidence 3467999999999999999999877 679999999999999999998 54 46899999999998876541
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+|++|.... ....+++.+.+.|+|||++++.
T Consensus 140 ---------------------~~~~~~~D~v~~d~~~~-------------~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 140 ---------------------AGEAGTFDVAVVDADKE-------------NCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp ---------------------TTCTTCEEEEEECSCST-------------THHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cCCCCCccEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 00015799999976422 1268999999999999999984
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-09 Score=113.55 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=93.6
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~ 123 (772)
|+......+..+..++ .++.+|||+|||+|.++..++..|..+|+++|+++.+++.++++...++ ..+++.++
T Consensus 108 f~~~~~~er~ri~~~~-----~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~ 182 (278)
T 3k6r_A 108 FSPANVKERVRMAKVA-----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182 (278)
T ss_dssp CCGGGHHHHHHHHHHC-----CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EcCCcHHHHHHHHHhc-----CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC
Confidence 4444444455566666 4689999999999999999999987789999999999999988775544 36899999
Q ss_pred eccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 124 DMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 124 D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
|+.++. ..+.||.|+...... ...++..+.++||+||++.+..+...
T Consensus 183 D~~~~~--~~~~~D~Vi~~~p~~-----------~~~~l~~a~~~lk~gG~ih~~~~~~e 229 (278)
T 3k6r_A 183 DNRDFP--GENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTVPE 229 (278)
T ss_dssp CTTTCC--CCSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred cHHHhc--cccCCCEEEECCCCc-----------HHHHHHHHHHHcCCCCEEEEEeeecc
Confidence 999986 568899998653221 23577888899999999887766543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=109.29 Aligned_cols=160 Identities=10% Similarity=0.071 Sum_probs=94.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.+|+|+|.++..+....|..++++||+++.+++.|++.+..... +++++.+|+.+.+.....
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~---------- 97 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAE---------- 97 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHH----------
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhh----------
Confidence 456799999999999999999999888999999999999999998854322 789999999997665220
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-----------------cHHHHHHHHHccCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----------------EGSFLLTVKDALSEQ 683 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-----------------~~~fl~~~~~~L~~~ 683 (772)
...+||+|++|.--... ..+...+.... -..+++.+++.|+||
T Consensus 98 -------------------~~~~fD~i~~npp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 98 -------------------RGRPWHAIVSNPPYIPT-GEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp -------------------TTCCBSEEEECCCCCC-------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred -------------------ccCcccEEEECCCCCCC-ccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 12579999995311000 00000001110 178999999999999
Q ss_pred cE-EEEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEecCC
Q 004133 684 GL-FIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 684 Gi-lv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
|. +++.+..........++..+..-|..+.......+...++++.+..
T Consensus 158 G~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~~ 206 (215)
T 4dzr_A 158 RAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREP 206 (215)
T ss_dssp SEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEECC
T ss_pred CeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEcC
Confidence 99 7776654444443333443345577666666556667888887654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=116.46 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=84.0
Q ss_pred CeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcc-cccCCCccEEEeccccc
Q 004133 70 PQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-VFMDETFDVILDKGGLD 146 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l~ 146 (772)
.+|||||||+|.++..+++. +..+|++||+++.+++.+++.+... .++++++++|+.++. .+++++||+|+......
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 59999999999999999984 3347999999999999998887432 468999999998752 14568999999754332
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
...... -....++++++++|+|||+|++.....
T Consensus 171 ~~~~~~---L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 171 AITPQN---FTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp SCCCGG---GSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred cccchh---hhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 211100 002689999999999999999877643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.96 E-value=6.6e-10 Score=115.21 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=82.1
Q ss_pred hHHHHHHHhhcCCCC--CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecc
Q 004133 52 QLRDPLISLIGAPTS--SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMT 126 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~--~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~ 126 (772)
.....+...+..... .++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++....+. +++++++|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 126 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK 126 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchh
Confidence 344455555543211 14679999999999999988876 224799999999999999888755433 4999999987
Q ss_pred Cc---cccc---CCCccEEEecccccccccC-cc-----c--hHHHHHHHHHHHhccccCeEEEEE
Q 004133 127 SM---QVFM---DETFDVILDKGGLDALMEP-EL-----G--HKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 127 ~l---~~~~---~~sfDvVi~~~~l~~l~~~-~~-----~--~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+. + ++ +++||+|+++..++..... .. - ......++.+++++|||||.+.++
T Consensus 127 ~~~~~~-~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 127 TLLMDA-LKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp CSSTTT-STTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhh-hhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 62 3 44 3689999998665543200 00 0 001235678899999999987655
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=110.74 Aligned_cols=108 Identities=17% Similarity=0.282 Sum_probs=88.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+||.||+|.|..+.++...+| ..+|++||++|.+++.|++++ |+ .++++++.+|+.+++.....
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~l~~l~~------- 142 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV--AEKISLRLGPALATLEQLTQ------- 142 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHHHHHHT-------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh-------
Confidence 457999999999999999999887 679999999999999999987 55 46899999999998877541
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
......||+|++|.+.. -...+++.+.+.|+|||++++.-+
T Consensus 143 --------------------~~~~~~fD~V~~d~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 143 --------------------GKPLPEFDLIFIDADKR-------------NYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp --------------------SSSCCCEEEEEECSCGG-------------GHHHHHHHHHHTEEEEEEEEEECT
T ss_pred --------------------cCCCCCcCEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEeCC
Confidence 00015799999986422 127799999999999999998643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-09 Score=116.53 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=72.7
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l 128 (772)
+.+...+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++..... .+++++++|+.++
T Consensus 14 ~~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 14 PLIINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 3455556666654 5788999999999999999999875 79999999999999988774332 4799999999988
Q ss_pred ccccCCCccEEEecccccc
Q 004133 129 QVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~ 147 (772)
+ ++ +||+|+++..++.
T Consensus 90 ~-~~--~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 90 D-LP--FFDTCVANLPYQI 105 (285)
T ss_dssp C-CC--CCSEEEEECCGGG
T ss_pred c-ch--hhcEEEEecCccc
Confidence 7 54 7999999765544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-10 Score=121.30 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhc---cCCCCcEEE--EeeccCcccccCCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV---RDRSDMRWR--VMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~---~~~~~v~f~--~~D~~~l~~~~~~sfDvVi~ 141 (772)
.++.+|||+|||+|.++..+++. ..|+|+|+|+ |+..++++.. ....++.|+ ++|+.+++ +++||+|++
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD~V~s 146 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP---VERTDVIMC 146 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC---CCCCSEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC---CCCCcEEEE
Confidence 57889999999999999999988 4699999999 5332211110 011168999 99999865 679999999
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCe--EEEEEEcC
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGG--KFVCLTLA 181 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG--~~ii~~~~ 181 (772)
... ++......+......+|+++.++||||| .|++..+.
T Consensus 147 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 147 DVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 766 4332211000001238899999999999 99998887
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=116.96 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-----CCCcEEEEeeccCc-ccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSM-QVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-----~~~v~f~~~D~~~l-~~~~~~sfDvVi 140 (772)
.+.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++++... .++++++++|+.+. + ..+++||+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK-NHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH-HCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH-hcCCCceEEE
Confidence 4579999999999999999987 4568999999999999998876432 46899999999873 3 3567899999
Q ss_pred ecccccccccCccchHHH-HHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLG-NQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~-~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+... +.+.... ... ..+++++.++|+|||++++..
T Consensus 187 ~d~~-~~~~~~~---~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAE---SLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-----------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcch---hhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 7553 2221111 112 689999999999999999865
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.1e-09 Score=107.34 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=98.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|+|.++..+....|...|++||+++.+++.|++...-..-.+++++.+|+.+++...-
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~------------ 101 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI------------ 101 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS------------
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc------------
Confidence 45789999999999999999999999999999999999999988521112469999999999877532
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
....||.|++.. +++..........++...|++.+.+.|+|||+|++-. ....+.+.+
T Consensus 102 ------------------~~~~~d~v~~~~--~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t--d~~~~~~~~ 159 (218)
T 3dxy_A 102 ------------------PDNSLRMVQLFF--PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT--DWEPYAEHM 159 (218)
T ss_dssp ------------------CTTCEEEEEEES--CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE--SCHHHHHHH
T ss_pred ------------------CCCChheEEEeC--CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe--CCHHHHHHH
Confidence 136799999843 2221111112234667789999999999999998754 455555555
Q ss_pred HHHHHHh
Q 004133 702 ISRMKMV 708 (772)
Q Consensus 702 ~~~l~~v 708 (772)
+..+...
T Consensus 160 ~~~~~~~ 166 (218)
T 3dxy_A 160 LEVMSSI 166 (218)
T ss_dssp HHHHHTS
T ss_pred HHHHHhC
Confidence 5555543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-09 Score=114.40 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCc-ccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l-~~~~~~sfDvVi 140 (772)
.+.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++.. ..++++++++|+.+. + ..+++||+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-KFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-GCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-hCCCCceEEE
Confidence 4579999999999999999987 556899999999999999877532 246899999998873 4 4567899999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+...-.+...... .....+++++.++|+|||++++.+.+
T Consensus 169 ~d~~~~~~~~~~~--l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 169 IDSTDPTAGQGGH--LFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCcccCchhh--hhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 7533211111000 00268999999999999999987543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=115.79 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCc-ccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l-~~~~~~sfDvVi 140 (772)
++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++.. ..++++++++|+.+. + ..+++||+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE-NVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-HCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh-hcCCCceEEE
Confidence 4579999999999999999987 456899999999999999887643 146799999999874 3 3467899999
Q ss_pred ecccccccccCccchHHH-HHHHHHHHhccccCeEEEEEEcC
Q 004133 141 DKGGLDALMEPELGHKLG-NQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~-~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+... +...... ... ..+++++.++|+|||++++...+
T Consensus 195 ~d~~-~p~~~~~---~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 195 VDSS-DPIGPAE---TLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EECC-CSSSGGG---GGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCc-CCCCcch---hhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 7543 2111100 111 68999999999999999987543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=110.47 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=87.4
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
....++..++.. .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++....+ .+++++++|+.+
T Consensus 56 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 56 EQAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 344445444433 35789999999999999999986 2 4579999999999999988775443 479999999876
Q ss_pred cc-cccC----CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 128 MQ-VFMD----ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 128 l~-~~~~----~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.. .+.+ ++||+|++.... .. ...+++++.++|+|||++++...
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~~-----~~-----~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDADK-----EN-----CSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCS-----TT-----HHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhcCCCCCccEEEECCCH-----HH-----HHHHHHHHHHHcCCCeEEEEECC
Confidence 41 1222 789999975431 11 56899999999999999998653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-09 Score=111.69 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCc---cEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETF---DVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sf---DvVi~~ 142 (772)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++....+. +++|+++|+.+. ++ ++| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~--~~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP--FK-EKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG--GG-GGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh--cc-cccCCCCEEEEc
Confidence 4679999999999999999887335799999999999999888755443 499999999874 23 579 999997
Q ss_pred cccccccc---Cc--cchHH-------HHHHHHHHH-hccccCeEEEEEE
Q 004133 143 GGLDALME---PE--LGHKL-------GNQYLSEVK-RLLKSGGKFVCLT 179 (772)
Q Consensus 143 ~~l~~l~~---~~--~~~~~-------~~~~l~ei~-rvLkpGG~~ii~~ 179 (772)
........ ++ ..+.. -..+++++. +.|+|||++++..
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 32211100 00 00000 126899999 9999999998753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=111.79 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=100.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
+..+|||||||.|-++..++.. +...|+++|+++.|++.+++++...+....+.+.|...-+ +.+.||+|++.-+++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~--p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR--LDEPADVTLLLKTLP 209 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC--CCSCCSEEEETTCHH
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC--CCCCcchHHHHHHHH
Confidence 4679999999999999988777 5568999999999999999888777778999999998765 678999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEc---Cch--hhhh---ccccc-cc-CCcEEEEEEcCC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL---AES--HVLG---LLFPK-FR-FGWKMSVHAIPQ 206 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~---~~~--~~~~---~l~~~-~~-~~w~~~~~~~~~ 206 (772)
++.+.. ....+ ++...|+++|.++-..- +.. -+.. ..+.. .. .+|.+.-..+.+
T Consensus 210 ~Le~q~-----kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~n 273 (281)
T 3lcv_B 210 CLETQQ-----RGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGN 273 (281)
T ss_dssp HHHHHS-----TTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred Hhhhhh-----hHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecC
Confidence 997654 23555 89999999999887543 222 2222 22222 22 478777766654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=109.98 Aligned_cols=103 Identities=13% Similarity=0.030 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCc-ccc-----cCCCc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSM-QVF-----MDETF 136 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l-~~~-----~~~sf 136 (772)
.++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.++++....+. +++++++|+.+. +.+ .+++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 35679999999999999999886 2 35799999999999999887754433 589999999874 212 25789
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+|+...... ....+++.+.++|+|||++++..
T Consensus 149 D~I~~d~~~~----------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDADKP----------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSCGG----------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCchH----------HHHHHHHHHHHhcCCCeEEEEec
Confidence 9998653211 15789999999999999998764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=109.44 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=86.4
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
.....+..++.. .++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.|+++....+ .++++.++|+.+
T Consensus 59 ~~~~~l~~l~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 135 (232)
T 3cbg_A 59 EQAQFLGLLISL---TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135 (232)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 344444444432 35679999999999999999986 2 3479999999999999987764332 368999999865
Q ss_pred c-cc--ccC--CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 128 M-QV--FMD--ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 128 l-~~--~~~--~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
. +. ..+ ++||+|++..... . ...+++++.++|+|||++++....
T Consensus 136 ~l~~l~~~~~~~~fD~V~~d~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 136 TLEQLTQGKPLPEFDLIFIDADKR-----N-----YPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp HHHHHHTSSSCCCEEEEEECSCGG-----G-----HHHHHHHHHHTEEEEEEEEEECTT
T ss_pred HHHHHHhcCCCCCcCEEEECCCHH-----H-----HHHHHHHHHHHcCCCeEEEEeCCC
Confidence 2 21 223 7899999754311 1 578999999999999999986544
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=108.37 Aligned_cols=112 Identities=9% Similarity=0.156 Sum_probs=85.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+||.||+|.|.++.++...++ ..+|++||++|.+++.|++++ |+ +++++++.+|+.+++.....
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~l~~~~~------- 128 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL--QDKVTILNGASQDLIPQLKK------- 128 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGTTT-------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCceEEEECCHHHHHHHHHH-------
Confidence 467999999999999999998765 679999999999999999987 54 46899999999998766431
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
......||+|++|...... .-..++++.+ +.|+|||+|++.-+..
T Consensus 129 --------------------~~~~~~fD~V~~d~~~~~~----------~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 129 --------------------KYDVDTLDMVFLDHWKDRY----------LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp --------------------TSCCCCCSEEEECSCGGGH----------HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred --------------------hcCCCceEEEEEcCCcccc----------hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 0112579999997532210 0123567777 9999999999865443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.4e-09 Score=107.43 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=106.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC---C-CCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---T-QDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~---~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.||+|+|.++..|....|..+|++||+++.+++.|++.+.. . -.++++++.+|..+++......
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~----- 109 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA----- 109 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT-----
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh-----
Confidence 345689999999999999999999888999999999999999999754 2 2357999999998875432100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCCCCCCCcCCc---------CCCcHHHHHHHHHccCCCcEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSSSGMTCPAA---------DFVEGSFLLTVKDALSEQGLF 686 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~-~~~d~~~g~s~Pp~---------~f~~~~fl~~~~~~L~~~Gil 686 (772)
.....+||+|+++. +.... +..+|.. ...-..+++.+.+.|+|+|.|
T Consensus 110 ---------------------~~~~~~fD~Vv~nPPy~~~~--~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l 166 (260)
T 2ozv_A 110 ---------------------GLPDEHFHHVIMNPPYNDAG--DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQL 166 (260)
T ss_dssp ---------------------TCCTTCEEEEEECCCC-----------------------CCHHHHHHHHHHHEEEEEEE
T ss_pred ---------------------ccCCCCcCEEEECCCCcCCC--CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEE
Confidence 00135799999962 11000 1111110 012468999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhccceEEEee----cCCceEEEEEecC
Q 004133 687 IVNLVSRSQATKDMVISRMKMVFNHLFCLQL----EEDVNLVLFGLSS 730 (772)
Q Consensus 687 v~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~----~~~~N~vl~a~~~ 730 (772)
++-... . ....++..+++.|..+....+ ....+.+++....
T Consensus 167 ~~~~~~--~-~~~~~~~~l~~~~~~~~i~~v~~~~~~~~~~~lv~~~k 211 (260)
T 2ozv_A 167 SLISRP--Q-SVAEIIAACGSRFGGLEITLIHPRPGEDAVRMLVTAIK 211 (260)
T ss_dssp EEEECG--G-GHHHHHHHHTTTEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred EEEEcH--H-HHHHHHHHHHhcCCceEEEEEcCCCCCCceEEEEEEEe
Confidence 985432 2 335567777776764443332 3346777766543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-09 Score=116.66 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccC-cccc-cCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTS-MQVF-MDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~-l~~~-~~~sfDvVi~~~ 143 (772)
++.+|||+| |+|.++..++..+. .+|+++|+|+.|++.|+++....+. +++|+++|+.+ ++ . .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~-~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLP-DYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCC-TTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhch-hhccCCccEEEECC
Confidence 578999999 99999999988865 6899999999999999888754333 79999999998 66 3 357899999876
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.+... . ...+++++.++|||||++++.+
T Consensus 250 p~~~~-~-------~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 250 PETLE-A-------IRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp CSSHH-H-------HHHHHHHHHHTBCSTTCEEEEE
T ss_pred CCchH-H-------HHHHHHHHHHHcccCCeEEEEE
Confidence 55432 1 4789999999999999553333
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=111.67 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.+..+|||+|||+|.++..+++. +..+++..|. +.+++.++++.... ..+++|+.+|+.+.+ .+ .+|+|+...+
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~-~~--~~D~~~~~~v 253 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP-LP--EADLYILARV 253 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC-CC--CCSEEEEESS
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC-CC--CceEEEeeee
Confidence 45679999999999999999987 3346888897 78999998776432 357999999998765 43 5799999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
||.+.+++ ..++|+++++.|+|||++++++..
T Consensus 254 lh~~~d~~-----~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 254 LHDWADGK-----CSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp GGGSCHHH-----HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred cccCCHHH-----HHHHHHHHHhhCCCCCEEEEEEee
Confidence 99886643 678999999999999999998754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.6e-09 Score=116.79 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=90.9
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc-
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV- 130 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~- 130 (772)
..+...+.. .++.+|||+|||+|..+..++.. +...|+++|+|+.+++.++++....+ .++++.++|+.+++.
T Consensus 249 ~l~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~ 325 (450)
T 2yxl_A 249 AVASIVLDP---KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI 325 (450)
T ss_dssp HHHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS
T ss_pred HHHHHhcCC---CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh
Confidence 334455554 57889999999999999999885 32579999999999999988875544 379999999988752
Q ss_pred ccCCCccEEEec------cccccccc------CccchH---HHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 131 FMDETFDVILDK------GGLDALME------PELGHK---LGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 131 ~~~~sfDvVi~~------~~l~~l~~------~~~~~~---~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++++||+|++. +++....+ +++-.. ....+++++.++|||||++++++++-
T Consensus 326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 344789999962 33322111 010000 12678999999999999999988653
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-09 Score=107.74 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=87.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+.+||.||+|.|.++..+...+|..+|++||+++.+++.|++.+ |+ .++++++.+|+.+++....
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~--------- 122 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL--ESRIELLFGDALQLGEKLE--------- 122 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCGGGSHHHHT---------
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHHHHhcc---------
Confidence 456999999999999999999998889999999999999999987 44 4679999999988766542
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....||+|++|.... ....+|+.+.+.|+|||++++.-
T Consensus 123 ---------------------~~~~fD~I~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 123 ---------------------LYPLFDVLFIDAAKG-------------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp ---------------------TSCCEEEEEEEGGGS-------------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred ---------------------cCCCccEEEECCCHH-------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 025699999976432 23789999999999999999873
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.4e-09 Score=107.42 Aligned_cols=116 Identities=15% Similarity=0.274 Sum_probs=87.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+||.||+|.|.++.++...+| ..+|++||++|.+++.|++++ |+ +++++++.+|+.+++.......
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~~~~~~~~----- 132 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL--ENKIFLKLGSALETLQVLIDSK----- 132 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHCS-----
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHHHHHHHHhhc-----
Confidence 457999999999999999999987 679999999999999999997 44 4579999999999877542100
Q ss_pred ccccccccccCCCCCCCCCCCCCC--CceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASN--ARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~--~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
+ ++........ ..||+|++|.... .-..+|+.+.+.|+|||++++..
T Consensus 133 ------------~-~~~~~~~f~~~~~~fD~I~~~~~~~-------------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 133 ------------S-APSWASDFAFGPSSIDLFFLDADKE-------------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp ------------S-CCGGGTTTCCSTTCEEEEEECSCGG-------------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ------------c-cccccccccCCCCCcCEEEEeCCHH-------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 0 0000001112 5799999974321 11588999999999999999875
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7.6e-09 Score=116.09 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=92.9
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc-
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV- 130 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~- 130 (772)
....+...+.. .++.+|||+|||+|..+..++..+. ..|+++|+|+.+++.++++....+.++++.++|+.+++.
T Consensus 234 ~s~~~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~ 310 (429)
T 1sqg_A 234 SAQGCMTWLAP---QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW 310 (429)
T ss_dssp HHHTHHHHHCC---CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH
T ss_pred HHHHHHHHcCC---CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhh
Confidence 33444555554 6788999999999999999998742 579999999999999988876656678999999988751
Q ss_pred ccCCCccEEEec------cccccccc------Cccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 131 FMDETFDVILDK------GGLDALME------PELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 131 ~~~~sfDvVi~~------~~l~~l~~------~~~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++++||+|++. +++....+ +++- ......+++++.++|||||++++.+.+
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 345789999963 22222111 0000 011258899999999999999998854
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-09 Score=116.18 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .++++|+.+|+.+ + ++ .||+|++..+++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~-~~--~~D~v~~~~vlh 262 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-----NENLNFVGGDMFK-S-IP--SADAVLLKWVLH 262 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-----CSSEEEEECCTTT-C-CC--CCSEEEEESCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-----CCCcEEEeCccCC-C-CC--CceEEEEccccc
Confidence 45799999999999999999873 346999999 678865532 3469999999988 6 65 499999999999
Q ss_pred ccccCccchHHHHHHHHHHHhcccc---CeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKS---GGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkp---GG~~ii~~~~ 181 (772)
++.+++ ..++|++++++|+| ||++++.++.
T Consensus 263 ~~~d~~-----~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 263 DWNDEQ-----SLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp GSCHHH-----HHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred CCCHHH-----HHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 886533 56999999999999 9999998754
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.1e-09 Score=111.71 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.+++++...+ .+++++++|+.+.. ++||+|++....
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----VKGNRVIMNLPK 268 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----CCEEEEEECCTT
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----CCCcEEEECCcH
Confidence 578999999999999999 77 56689999999999999988876554 36999999998753 789999974321
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
. ...+++.+.++|+|||++++.++...
T Consensus 269 ~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 269 F-----------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp T-----------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred h-----------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 1 23688999999999999999887654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-09 Score=120.03 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=90.6
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~ 132 (772)
..+...+.. .++.+|||+|||+|..+..++.. +...|+++|+|+.+++.++++....+..+.+.++|+.+++.+.
T Consensus 91 ~l~a~~L~~---~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~ 167 (464)
T 3m6w_A 91 QAVGVLLDP---KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF 167 (464)
T ss_dssp HHHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH
T ss_pred HHHHHhcCc---CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc
Confidence 334455554 57899999999999999999976 2247999999999999998887654444899999998876234
Q ss_pred CCCccEEEec------ccccccccC------ccc---hHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 133 DETFDVILDK------GGLDALMEP------ELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 133 ~~sfDvVi~~------~~l~~l~~~------~~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++||+|++. +++..-.+. ++- .....++++++.++|||||++++.|.+
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 6899999952 222211110 000 011378999999999999999998765
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-08 Score=102.06 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=93.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|+|.++..+....|..++++||+++.+++.|++......-++++++.+|+.++.....
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~------------ 108 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE------------ 108 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC------------
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC------------
Confidence 45789999999999999999999989999999999999999988621111579999999876321111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
...||+|+++.. ++...-.-.+..+....+++.+.+.|+|||++++.. ........+
T Consensus 109 -------------------~~~~D~i~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~ 165 (214)
T 1yzh_A 109 -------------------DGEIDRLYLNFS--DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT--DNRGLFEYS 165 (214)
T ss_dssp -------------------TTCCSEEEEESC--CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE--SCHHHHHHH
T ss_pred -------------------CCCCCEEEEECC--CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe--CCHHHHHHH
Confidence 356999998632 211000000122456899999999999999999864 334444555
Q ss_pred HHHHHHh
Q 004133 702 ISRMKMV 708 (772)
Q Consensus 702 ~~~l~~v 708 (772)
++.+.+.
T Consensus 166 ~~~~~~~ 172 (214)
T 1yzh_A 166 LVSFSQY 172 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 5555543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-09 Score=117.96 Aligned_cols=114 Identities=15% Similarity=0.085 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc-cc--cCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-VF--MDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-~~--~~~sfDvVi~~~ 143 (772)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...+ .+++|+++|+.+.. .+ .+++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 4679999999999999999987 5579999999999999988875544 35999999998763 01 157899999754
Q ss_pred cccccccCc--cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
......... ........++..+.++|+|||++++.+...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 332211100 001226789999999999999999988664
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=99.45 Aligned_cols=109 Identities=12% Similarity=0.045 Sum_probs=84.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|+|.++..+... +..+|++||+|+.+++.|++.+....-++++++.+|+.+++....
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~------------ 110 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT------------ 110 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc------------
Confidence 4578999999999999877664 455899999999999999998722111579999999999976643
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC---CcHHHHHHHHH--ccCCCcEEEEEecCCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF---VEGSFLLTVKD--ALSEQGLFIVNLVSRS 694 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f---~~~~fl~~~~~--~L~~~Gilv~Nl~~~~ 694 (772)
..+||+|++|. |-.. .-..+++.+.+ .|+|||++++....+.
T Consensus 111 -------------------~~~fD~i~~~~------------p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 111 -------------------TSPVDLVLADP------------PYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp -------------------SSCCSEEEECC------------CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred -------------------CCCccEEEECC------------CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 36799999953 1111 13678899988 9999999999876543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-08 Score=100.63 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=94.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..|....|..++++||+++.+++.|++...-..-++++++.+|+.++.....
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~------------ 105 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE------------ 105 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC------------
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC------------
Confidence 45789999999999999999999999999999999999999987621112569999999988432222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
...||.|++....+.... .--...+....+++.+.+.|+|||.|++-. ........+
T Consensus 106 -------------------~~~~d~v~~~~~~p~~~~--~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~ 162 (213)
T 2fca_A 106 -------------------PGEVKRVYLNFSDPWPKK--RHEKRRLTYSHFLKKYEEVMGKGGSIHFKT--DNRGLFEYS 162 (213)
T ss_dssp -------------------TTSCCEEEEESCCCCCSG--GGGGGSTTSHHHHHHHHHHHTTSCEEEEEE--SCHHHHHHH
T ss_pred -------------------cCCcCEEEEECCCCCcCc--cccccccCcHHHHHHHHHHcCCCCEEEEEe--CCHHHHHHH
Confidence 256999987542211100 000123557899999999999999999764 344455555
Q ss_pred HHHHHHh
Q 004133 702 ISRMKMV 708 (772)
Q Consensus 702 ~~~l~~v 708 (772)
+..+.+.
T Consensus 163 ~~~~~~~ 169 (213)
T 2fca_A 163 LKSFSEY 169 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 6666554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=98.69 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=101.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.++..+... ..++++||+++.+++.|++.+ ++ .+.+++++.+|..+++.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~~~~------------ 116 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYENVK------------ 116 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTTTCT------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCC-CccceEEEECchhcccc------------
Confidence 4578999999999999988887 569999999999999999987 43 12269999999866421
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
...||+|+++.--. ...-....+++.+.+.|+|||.+++....... .
T Consensus 117 ----------------------~~~~D~v~~~~~~~---------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~--~ 163 (194)
T 1dus_A 117 ----------------------DRKYNKIITNPPIR---------AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG--A 163 (194)
T ss_dssp ----------------------TSCEEEEEECCCST---------TCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH--H
T ss_pred ----------------------cCCceEEEECCCcc---------cchhHHHHHHHHHHHHcCCCCEEEEEECCCCC--h
Confidence 25699999842100 00012368999999999999999998865532 3
Q ss_pred HHHHHHHHHhccceEEEeecCCceEEEEEe
Q 004133 699 DMVISRMKMVFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 699 ~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~ 728 (772)
..+.+.+++.|..+..+... ....++++.
T Consensus 164 ~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 192 (194)
T 1dus_A 164 KSLAKYMKDVFGNVETVTIK-GGYRVLKSK 192 (194)
T ss_dssp HHHHHHHHHHHSCCEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHhcceEEEecC-CcEEEEEEe
Confidence 45678888889877766533 345555554
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-09 Score=116.00 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeC----CHHHHHHHHHHhccC-CCCcEEEEe-eccCcccccCCCccEEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF----SKVVISDMLRRNVRD-RSDMRWRVM-DMTSMQVFMDETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDi----S~~~I~~a~~~~~~~-~~~v~f~~~-D~~~l~~~~~~sfDvVi 140 (772)
.++.+|||+|||+|.++..+++. ..|+|+|+ ++.+++.+ ..... .+++.|+++ |+.+++ .++||+|+
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~---~~~fD~V~ 153 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP---PERCDTLL 153 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC---CCCCSEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC---cCCCCEEE
Confidence 46789999999999999999988 36999999 56443211 01111 146899998 888765 46899999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+...++ ......+......+|..+.++|||||.|++..+..
T Consensus 154 sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 154 CDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp ECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred ECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 977654 11100000001258899999999999999977765
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=101.84 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=91.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..+....|..+|++||+++.+++.|++.+ |+ ++++++.+|+.+.+..
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~---------- 105 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA---RNVTLVEAFAPEGLDD---------- 105 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC---TTEEEEECCTTTTCTT----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeCChhhhhhc----------
Confidence 3457899999999999999999998889999999999999999886 54 6799999998654322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
...||+|+++.... .-..+++.+.+.|+|||.+++..... ..
T Consensus 106 -----------------------~~~~D~i~~~~~~~-------------~~~~~l~~~~~~LkpgG~l~~~~~~~--~~ 147 (204)
T 3e05_A 106 -----------------------LPDPDRVFIGGSGG-------------MLEEIIDAVDRRLKSEGVIVLNAVTL--DT 147 (204)
T ss_dssp -----------------------SCCCSEEEESCCTT-------------CHHHHHHHHHHHCCTTCEEEEEECBH--HH
T ss_pred -----------------------CCCCCEEEECCCCc-------------CHHHHHHHHHHhcCCCeEEEEEeccc--cc
Confidence 14599999854221 23789999999999999999986543 23
Q ss_pred HHHHHHHHHHh
Q 004133 698 KDMVISRMKMV 708 (772)
Q Consensus 698 ~~~v~~~l~~v 708 (772)
...+...+++.
T Consensus 148 ~~~~~~~l~~~ 158 (204)
T 3e05_A 148 LTKAVEFLEDH 158 (204)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 34455556554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-08 Score=111.86 Aligned_cols=173 Identities=14% Similarity=0.170 Sum_probs=114.2
Q ss_pred ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--------------CCCeEEEEeCCHHHHHHHHHH
Q 004133 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------------GFHGITNVDFSKVVISDMLRR 110 (772)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--------------g~~~V~gvDiS~~~I~~a~~~ 110 (772)
++|. ...+...+.+.+.. .++.+|||+|||+|.++..+++. ...+++|+|+++.+++.|+.+
T Consensus 152 ~fyT-P~~v~~~mv~~l~~---~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~n 227 (445)
T 2okc_A 152 QYFT-PRPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 227 (445)
T ss_dssp GGCC-CHHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred cccC-cHHHHHHHHHHhCC---CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHH
Confidence 4443 35667777777764 56789999999999999887763 123699999999999999876
Q ss_pred hccCCC---CcEEEEeeccCcccccCCCccEEEecccccccccCccc----------hHHHHHHHHHHHhccccCeEEEE
Q 004133 111 NVRDRS---DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELG----------HKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 111 ~~~~~~---~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~----------~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
...++. +..+.++|....+ . ...||+|+++..+......... ......+++.+.++|||||++.+
T Consensus 228 l~l~g~~~~~~~i~~gD~l~~~-~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 228 LYLHGIGTDRSPIVCEDSLEKE-P-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp HHHTTCCSSCCSEEECCTTTSC-C-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHhCCCcCCCCEeeCCCCCCc-c-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence 644443 6789999998876 3 3589999998777654322100 00124789999999999999988
Q ss_pred EEcC----c----hhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCC
Q 004133 178 LTLA----E----SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 178 ~~~~----~----~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
+... . ..+++.++... +...+..++...-.....+..+.+++|.+.
T Consensus 306 V~p~~~L~~~~~~~~iR~~L~~~~---~l~~ii~lp~~~F~~t~v~t~Il~~~k~~~ 359 (445)
T 2okc_A 306 VLPDNVLFEAGAGETIRKRLLQDF---NLHTILRLPTGIFYAQGVKANVLFFSKGQP 359 (445)
T ss_dssp EEEHHHHHCSTHHHHHHHHHHHHE---EEEEEEECCSSSSSSTTCCEEEEEEEESSC
T ss_pred EECCcccccCcHHHHHHHHHHhcC---cEEEEEeCCCCCccCCCCCEEEEEEECCCC
Confidence 8732 1 12232333321 222333444211123456778888888654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.9e-09 Score=109.60 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=67.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ 129 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~ 129 (772)
+.+...+...+.. .++.+|||+|||+|.++..|++.+. +|+|+|+|+.+++.++++.... .++++++++|+.+++
T Consensus 28 ~~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 28 PGILDKIIYAAKI---KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence 3455556666654 5778999999999999999998864 7999999999999998876433 257999999999877
Q ss_pred cccCCCccEEEeccccc
Q 004133 130 VFMDETFDVILDKGGLD 146 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~ 146 (772)
+ ++||+|+++...+
T Consensus 104 -~--~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 104 -F--PKFDVCTANIPYK 117 (299)
T ss_dssp -C--CCCSEEEEECCGG
T ss_pred -c--ccCCEEEEcCCcc
Confidence 4 4899999876554
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.2e-09 Score=109.07 Aligned_cols=95 Identities=14% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
.+.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++.+.. ..++++++.+|+.+.. ++||+|+..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEEC
Confidence 45799999999999999998887 7899999999999998765422 2467999999988743 789999975
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. .++ ..+++.+.++|+|||++++..
T Consensus 147 ~-----~dp-------~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 Q-----EPD-------IHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp S-----CCC-------HHHHHHHHTTEEEEEEEEEEE
T ss_pred C-----CCh-------HHHHHHHHHhcCCCcEEEEEc
Confidence 2 222 248999999999999999864
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.2e-08 Score=95.13 Aligned_cols=126 Identities=11% Similarity=0.051 Sum_probs=91.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+...+|..+|++||+++.+++.|++.+.-. .++++ ++.+|+.+.+...
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~----------- 91 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV----------- 91 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC-----------
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc-----------
Confidence 3456899999999999999999988889999999999999999886321 23478 8889986643331
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 699 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 699 (772)
...||+|+++..-. ...+++.+.+.|+|||.+++...... ...
T Consensus 92 ---------------------~~~~D~i~~~~~~~--------------~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~ 134 (178)
T 3hm2_A 92 ---------------------PDNPDVIFIGGGLT--------------APGVFAAAWKRLPVGGRLVANAVTVE--SEQ 134 (178)
T ss_dssp ---------------------CSCCSEEEECC-TT--------------CTTHHHHHHHTCCTTCEEEEEECSHH--HHH
T ss_pred ---------------------CCCCCEEEECCccc--------------HHHHHHHHHHhcCCCCEEEEEeeccc--cHH
Confidence 15699999732110 17899999999999999998876442 223
Q ss_pred HHHHHHHHhccceEEE
Q 004133 700 MVISRMKMVFNHLFCL 715 (772)
Q Consensus 700 ~v~~~l~~vF~~v~~~ 715 (772)
.+...+++...++..+
T Consensus 135 ~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 135 MLWALRKQFGGTISSF 150 (178)
T ss_dssp HHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHcCCeeEEE
Confidence 3455555554444433
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=114.70 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEec--
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDK-- 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~-- 142 (772)
++.+|||+|||+|..+..++.. + ...|+++|+|+.+++.++++....+ .++.++++|+.+++...+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 7889999999999999999986 2 3579999999999999988875433 479999999998761256789999973
Q ss_pred ----ccccccccCc--cch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 143 ----GGLDALMEPE--LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ----~~l~~l~~~~--~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++....+.. ..+ ....++|+++.++|||||++++.+.+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 2222111100 000 11357899999999999999998865
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-08 Score=103.00 Aligned_cols=109 Identities=10% Similarity=-0.009 Sum_probs=82.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|+|.++..|....+ .+|++||+++.+++.|++..... ..+++++.+|+.+.+....
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~~~~~----------- 125 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ-THKVIPLKGLWEDVAPTLP----------- 125 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC-SSEEEEEESCHHHHGGGSC-----------
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc-CCCeEEEecCHHHhhcccC-----------
Confidence 3457899999999999999976543 38999999999999999987432 3679999999988754432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-cHHHHHHHHHccCCCcEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-~~~fl~~~~~~L~~~Gilv~ 688 (772)
+..||+|++|.+.. . .+..+.- -..+++.+++.|+|||+|++
T Consensus 126 --------------------~~~fD~V~~d~~~~-~-----~~~~~~~~~~~~l~~~~r~LkpgG~l~~ 168 (236)
T 1zx0_A 126 --------------------DGHFDGILYDTYPL-S-----EETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp --------------------TTCEEEEEECCCCC-B-----GGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred --------------------CCceEEEEECCccc-c-----hhhhhhhhHHHHHHHHHHhcCCCeEEEE
Confidence 36799999975432 1 1111111 13679999999999999985
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=103.37 Aligned_cols=119 Identities=12% Similarity=0.155 Sum_probs=89.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|+|.++..|....|..+|++||+++.+++.|++.+ |+ ++++++.+|+.++.....
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~--------- 137 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKD--------- 137 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTT---------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEeccHHHhccccc---------
Confidence 457899999999999998988888889999999999999999875 54 359999999987631100
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
...+||+|+++.... -..+++.+.+.|+|||.|++-.........
T Consensus 138 ---------------------~~~~fD~V~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~ 182 (240)
T 1xdz_A 138 ---------------------VRESYDIVTARAVAR--------------LSVLSELCLPLVKKNGLFVALKAASAEEEL 182 (240)
T ss_dssp ---------------------TTTCEEEEEEECCSC--------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHH
T ss_pred ---------------------ccCCccEEEEeccCC--------------HHHHHHHHHHhcCCCCEEEEEeCCCchHHH
Confidence 025799999865211 278999999999999999986433333333
Q ss_pred HHHHHHHHH
Q 004133 699 DMVISRMKM 707 (772)
Q Consensus 699 ~~v~~~l~~ 707 (772)
..+...++.
T Consensus 183 ~~~~~~l~~ 191 (240)
T 1xdz_A 183 NAGKKAITT 191 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444455544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-08 Score=111.34 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=89.0
Q ss_pred chhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecc
Q 004133 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (772)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~ 126 (772)
....+...+.+++.. .++.+|||+|||+|.++..+++. +..+++|+|+++.+++.| .++++.++|+.
T Consensus 23 TP~~l~~~~~~~~~~---~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------~~~~~~~~D~~ 91 (421)
T 2ih2_A 23 TPPEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILADFL 91 (421)
T ss_dssp CCHHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEESCGG
T ss_pred CCHHHHHHHHHhhcc---CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------CCCcEEeCChh
Confidence 345677777777753 35679999999999999999875 345799999999888655 47899999999
Q ss_pred CcccccCCCccEEEecccccccccC--------ccch--------------HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 127 SMQVFMDETFDVILDKGGLDALMEP--------ELGH--------------KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 127 ~l~~~~~~sfDvVi~~~~l~~l~~~--------~~~~--------------~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+.. +.+.||+|+++..+...... +... .....+++.+.++|+|||+++++...
T Consensus 92 ~~~--~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 92 LWE--PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp GCC--CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred hcC--ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 876 45789999997554332210 0000 01337799999999999999888743
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-08 Score=103.37 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=98.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.||+|.|.++..+....+. +|++||+++.+++.|++.+... -.++++++.+|..++.....
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~----------- 116 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP----------- 116 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC-----------
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc-----------
Confidence 5679999999999999999988765 9999999999999999987322 24689999999988754322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCC-CCCCCCCCcCCcC---------CCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAAD---------FVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~-~d~~~g~s~Pp~~---------f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+||+|++|.-- .....+..+|... ..-..+++.+.+.|+|||.|++-.
T Consensus 117 --------------------~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 117 --------------------KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp --------------------TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------------cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 3679999995311 0001122222111 112579999999999999999843
Q ss_pred cCCChhHHHHHHHHHHHh-ccceE--EEe--ecCCceEEEEEec
Q 004133 691 VSRSQATKDMVISRMKMV-FNHLF--CLQ--LEEDVNLVLFGLS 729 (772)
Q Consensus 691 ~~~~~~~~~~v~~~l~~v-F~~v~--~~~--~~~~~N~vl~a~~ 729 (772)
+... ...++..+++. |.-.. .+. .....+.+++...
T Consensus 177 --~~~~-~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 217 (259)
T 3lpm_A 177 --RPER-LLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGI 217 (259)
T ss_dssp --CTTT-HHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEE
T ss_pred --cHHH-HHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEE
Confidence 2222 23456666653 33221 121 1334566666543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.6e-08 Score=101.93 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=95.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.+|+|.|.++..+... .|..+|++||++|.+++.|++.+ |+ +++++++.+|+.+. ..
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---~~------- 159 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF--DDRVTIKLKDIYEG---IE------- 159 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC--TTTEEEECSCGGGC---CC-------
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC--CCceEEEECchhhc---cC-------
Confidence 45678999999999999999988 67889999999999999999987 65 46799999998753 11
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
...||+|++|... | ..+++.+.+.|+|||.+++...+. .
T Consensus 160 ------------------------~~~~D~v~~~~~~---------~------~~~l~~~~~~L~~gG~l~~~~~~~--~ 198 (255)
T 3mb5_A 160 ------------------------EENVDHVILDLPQ---------P------ERVVEHAAKALKPGGFFVAYTPCS--N 198 (255)
T ss_dssp ------------------------CCSEEEEEECSSC---------G------GGGHHHHHHHEEEEEEEEEEESSH--H
T ss_pred ------------------------CCCcCEEEECCCC---------H------HHHHHHHHHHcCCCCEEEEEECCH--H
Confidence 2569999995421 1 568999999999999999876433 3
Q ss_pred HHHHHHHHHHHh---ccceEEE
Q 004133 697 TKDMVISRMKMV---FNHLFCL 715 (772)
Q Consensus 697 ~~~~v~~~l~~v---F~~v~~~ 715 (772)
....+.+.+++. |..+..+
T Consensus 199 ~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 199 QVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp HHHHHHHHHHHTGGGBSCCEEE
T ss_pred HHHHHHHHHHHcCCCccccEEE
Confidence 344566777666 7655444
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=114.09 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=90.3
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccc
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVF 131 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~ 131 (772)
..+...+.. .++.+|||+|||+|..+..++.. +...|+++|+|+.+++.++++....+ .++.+.++|+.++..+
T Consensus 95 ~l~~~~L~~---~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~ 171 (456)
T 3m4x_A 95 MIVGTAAAA---KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH 171 (456)
T ss_dssp HHHHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH
T ss_pred HHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh
Confidence 344555554 57899999999999999999876 33579999999999999988775443 3689999999887523
Q ss_pred cCCCccEEEecccc---cccccCcc--------c----hHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 132 MDETFDVILDKGGL---DALMEPEL--------G----HKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 132 ~~~sfDvVi~~~~l---~~l~~~~~--------~----~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.+++||+|++.... ..+....+ . ......+|+++.++|||||++++.|.+-
T Consensus 172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 46899999964321 11111000 0 0113488999999999999999987653
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-08 Score=99.11 Aligned_cols=156 Identities=11% Similarity=0.114 Sum_probs=100.6
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+| +|.++..+.... ..+|++||+|+.+++.|++.+....- +++++.+|+..+ ...
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~-~~~----------- 119 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGII-KGV----------- 119 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSS-TTT-----------
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhh-hhc-----------
Confidence 356799999999 999999998885 56999999999999999988732111 799999997422 111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCC-CCCCCCCcCCcCC--------CcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMTCPAADF--------VEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~-d~~~g~s~Pp~~f--------~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...+||+|+++.--. ........|...+ ....+++.+.+.|+|||.+++.+
T Consensus 120 --------------------~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 120 --------------------VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp --------------------CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --------------------ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 136799999863110 0000000000000 12789999999999999999976
Q ss_pred cCCChhHHHHHHHHHHHhccceEEEeecC--CceEEEEEecCC
Q 004133 691 VSRSQATKDMVISRMKMVFNHLFCLQLEE--DVNLVLFGLSSE 731 (772)
Q Consensus 691 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~--~~N~vl~a~~~~ 731 (772)
..+. .....+.+.+++..-.+..++... ....++...+.+
T Consensus 180 ~~~~-~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 180 PDKE-KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKGI 221 (230)
T ss_dssp ESCH-HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECCC
T ss_pred cccH-hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEeccc
Confidence 5443 344566777777644555555433 345555555443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.6e-08 Score=102.37 Aligned_cols=102 Identities=12% Similarity=0.212 Sum_probs=79.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|+|.++..|++.+ |+.+|++||++|.|++.|++.+. .....+++++.+|..++ .
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~----~-------- 136 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A-------- 136 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC----C--------
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc----c--------
Confidence 345789999999999999998876 46799999999999999999862 22356899999997543 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc----HHHHHHHHHccCCCcEEEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~----~~fl~~~~~~L~~~Gilv~N 689 (772)
...||+|++-. . -+++. ..+|+.+++.|+|||+|++-
T Consensus 137 -----------------------~~~~d~v~~~~--~----------l~~~~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 137 -----------------------IENASMVVLNF--T----------LQFLEPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp -----------------------CCSEEEEEEES--C----------GGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------------------ccccccceeee--e----------eeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence 24599998721 1 12221 46899999999999999874
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-08 Score=96.67 Aligned_cols=108 Identities=13% Similarity=0.119 Sum_probs=85.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|+|.|.++..+... +..+|++||+++.+++.|++.+... ..++++++.+|+.+++....
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----------- 98 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT----------- 98 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC-----------
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc-----------
Confidence 4578999999999999988877 5569999999999999999987432 13579999999999876532
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc-CCCcHHHHHHHH--HccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA-DFVEGSFLLTVK--DALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~-~f~~~~fl~~~~--~~L~~~Gilv~Nl~~~~ 694 (772)
..||+|++|. |- .....++++.+. +.|+|||++++......
T Consensus 99 ---------------------~~fD~i~~~~------------~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 99 ---------------------GRFDLVFLDP------------PYAKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp ---------------------SCEEEEEECC------------SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred ---------------------CCCCEEEECC------------CCCcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 4599999852 11 112367788887 88999999999886554
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.73 E-value=7.3e-08 Score=101.40 Aligned_cols=141 Identities=14% Similarity=0.081 Sum_probs=101.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|+|.|..+..|...+++ .+|++||+++.+++.+++.. |+ ++++++.+|+.++......
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~~------- 152 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYLLK------- 152 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHHHH-------
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhhhh-------
Confidence 4568999999999999999998776 79999999999999999886 54 3799999999988654210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC----------cCCCcHHHHHHHHHccCCCcEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA----------ADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp----------~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
....||+|++|+-.+. .|+.-.. ..-....+|+.+.+.|+|||.++
T Consensus 153 ----------------------~~~~fD~Vl~d~Pcs~--~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 208 (274)
T 3ajd_A 153 ----------------------NEIFFDKILLDAPCSG--NIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELV 208 (274)
T ss_dssp ----------------------TTCCEEEEEEEECCC--------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------ccccCCEEEEcCCCCC--CcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 0256999999863321 1111000 00134789999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhccceEEEe
Q 004133 688 VNLVSRSQATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
+...+......+.++..+.+.++.....+
T Consensus 209 ~stcs~~~~ene~~v~~~l~~~~~~~~~~ 237 (274)
T 3ajd_A 209 YSTCSMEVEENEEVIKYILQKRNDVELII 237 (274)
T ss_dssp EEESCCCTTSSHHHHHHHHHHCSSEEEEC
T ss_pred EEECCCChHHhHHHHHHHHHhCCCcEEec
Confidence 98876665555667777666555544333
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=100.99 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=92.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC------CCCCCCeEEEEccHHHHHHhhcccCcc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG------FTQDKSLKVHITDGIKFVREMKSSSAT 614 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg------~~~~~rl~v~i~Dg~~~l~~~~~~~~~ 614 (772)
....+||.||+|.|.++..|+..+|...|++||+++.+++.|++... ....++++++.+|+.+++...-
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~----- 119 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF----- 119 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC-----
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC-----
Confidence 45578999999999999999999999999999999999999986531 0123579999999988665421
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
....||.|++....+.... .-.-..+....+|+.+.+.|+|||.|++.. ..
T Consensus 120 -------------------------~~~~~D~v~~~~~dp~~k~--~h~krr~~~~~~l~~~~~~LkpGG~l~~~t--d~ 170 (235)
T 3ckk_A 120 -------------------------YKGQLTKMFFLFPDPHFKR--TKHKWRIISPTLLAEYAYVLRVGGLVYTIT--DV 170 (235)
T ss_dssp -------------------------CTTCEEEEEEESCC-------------CCCHHHHHHHHHHEEEEEEEEEEE--SC
T ss_pred -------------------------CCcCeeEEEEeCCCchhhh--hhhhhhhhhHHHHHHHHHHCCCCCEEEEEe--CC
Confidence 1357999987432211000 000123456799999999999999999765 34
Q ss_pred hhHHHHHHHHHHH
Q 004133 695 QATKDMVISRMKM 707 (772)
Q Consensus 695 ~~~~~~v~~~l~~ 707 (772)
..+...+++.+..
T Consensus 171 ~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 171 LELHDWMCTHFEE 183 (235)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4544545555544
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.73 E-value=6.8e-08 Score=99.76 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=92.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----------CCCCCCCeEEEEccHHHHHHhhcc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----------GFTQDKSLKVHITDGIKFVREMKS 610 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----------g~~~~~rl~v~i~Dg~~~l~~~~~ 610 (772)
...+||.||+|.|.++..+....|..+|++||+++.+++.|++.+ ++ ++++++.+|+.+++...-
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~---~nv~~~~~D~~~~l~~~~- 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF---QNINVLRGNAMKFLPNFF- 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT---TTEEEEECCTTSCGGGTS-
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC---CcEEEEeccHHHHHHHhc-
Confidence 457899999999999999999999889999999999999998765 33 479999999988665421
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 611 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....+|.|++...++.... .---..++...++..+.+.|+|||+|++..
T Consensus 125 -----------------------------~~~~~d~v~~~~p~p~~k~--~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 125 -----------------------------EKGQLSKMFFCFPDPHFKQ--RKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp -----------------------------CTTCEEEEEEESCCCC--------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------------cccccCEEEEECCCccccc--chhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 1356898887542221000 000123456899999999999999999843
Q ss_pred cCCChhHHHHHHHHHHH
Q 004133 691 VSRSQATKDMVISRMKM 707 (772)
Q Consensus 691 ~~~~~~~~~~v~~~l~~ 707 (772)
....+.+.+.+.+..
T Consensus 174 --d~~~~~~~~~~~~~~ 188 (246)
T 2vdv_E 174 --DVKDLHEWMVKHLEE 188 (246)
T ss_dssp --SCHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHh
Confidence 344444444444433
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.6e-08 Score=109.43 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+..++|.++|+.++. +. +||+|+......
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~--~~-~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVS--VK-GFDTVIVDPPRA 364 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCC--CT-TCSEEEECCCTT
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcC--cc-CCCEEEEcCCcc
Confidence 3678999999999999999998754 7999999999999998877544334999999999875 23 899999754321
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.+ ...+++.+. .|+|||++++..
T Consensus 365 g~---------~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 365 GL---------HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CS---------CHHHHHHHH-HHCCSEEEEEES
T ss_pred ch---------HHHHHHHHH-hcCCCcEEEEEC
Confidence 11 124555554 489999887753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-08 Score=102.18 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=66.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
.+...+...+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++... .++++++++|+.+++ +
T Consensus 17 ~~~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~-~~~v~~~~~D~~~~~-~ 90 (244)
T 1qam_A 17 HNIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD-HDNFQVLNKDILQFK-F 90 (244)
T ss_dssp HHHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT-CCSEEEECCCGGGCC-C
T ss_pred HHHHHHHHhCCC---CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc-CCCeEEEEChHHhCC-c
Confidence 444445555543 578899999999999999999987 4799999999999999887643 468999999999988 6
Q ss_pred cC-CCccEEEecc
Q 004133 132 MD-ETFDVILDKG 143 (772)
Q Consensus 132 ~~-~sfDvVi~~~ 143 (772)
++ ..| .|+++.
T Consensus 91 ~~~~~~-~vv~nl 102 (244)
T 1qam_A 91 PKNQSY-KIFGNI 102 (244)
T ss_dssp CSSCCC-EEEEEC
T ss_pred ccCCCe-EEEEeC
Confidence 64 456 455543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=95.09 Aligned_cols=115 Identities=9% Similarity=-0.006 Sum_probs=88.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..+... ..+|++||+++.+++.|++.. |+ +++++++.+|+.+.+..
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~~~~---------- 119 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGL--SPRMRAVQGTAPAALAD---------- 119 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCTTGGGTT----------
T ss_pred CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCEEEEeCchhhhccc----------
Confidence 34578999999999999998887 569999999999999999885 54 34799999998775332
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
...||+|+++. . + +.++++.+.+.|+|||.+++..... +.
T Consensus 120 -----------------------~~~~D~v~~~~--~-----~--------~~~~l~~~~~~LkpgG~lv~~~~~~--~~ 159 (204)
T 3njr_A 120 -----------------------LPLPEAVFIGG--G-----G--------SQALYDRLWEWLAPGTRIVANAVTL--ES 159 (204)
T ss_dssp -----------------------SCCCSEEEECS--C-----C--------CHHHHHHHHHHSCTTCEEEEEECSH--HH
T ss_pred -----------------------CCCCCEEEECC--c-----c--------cHHHHHHHHHhcCCCcEEEEEecCc--cc
Confidence 13599999853 1 1 1339999999999999999987643 33
Q ss_pred HHHHHHHHHHhc
Q 004133 698 KDMVISRMKMVF 709 (772)
Q Consensus 698 ~~~v~~~l~~vF 709 (772)
...+...+++.-
T Consensus 160 ~~~~~~~l~~~g 171 (204)
T 3njr_A 160 ETLLTQLHARHG 171 (204)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC
Confidence 344556665553
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=104.20 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=100.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-------CCC-----CcEEEEEcCH--------------HHHHHHHHhcC-------
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-------MPF-----VGIEAVELDL--------------TMLNLAEDYFG------- 587 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-------~p~-----~~i~~VEiDp--------------~v~~vA~~~Fg------- 587 (772)
..+.+||.||.|+|.....+... .|. .++++||.+| .+.++|++.+.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 45679999999999655554332 563 5899999998 34446665532
Q ss_pred ------CC-CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC
Q 004133 588 ------FT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 660 (772)
Q Consensus 588 ------~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~ 660 (772)
+. ...+++++++|+.+.+..... .....||+|++|.+++..
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~----------------------------~~~~~~D~iflD~fsp~~---- 186 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDD----------------------------SLNQKVDAWFLDGFAPAK---- 186 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCG----------------------------GGTTCEEEEEECSSCTTT----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhccc----------------------------ccCCeEEEEEECCCCccc----
Confidence 21 125788999999999877531 001369999999887632
Q ss_pred CcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHh-ccceEEEeecCCceEEEEEecCC
Q 004133 661 TCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 661 s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
.+.+++.++|+.+.++|+|||+|+. ++.+.. +...|+++ |. +...+-...-..++.+.+..
T Consensus 187 ---~p~lw~~~~l~~l~~~L~pGG~l~t--ysaa~~----vrr~L~~aGF~-v~~~~g~~~kr~m~~a~~~~ 248 (257)
T 2qy6_A 187 ---NPDMWTQNLFNAMARLARPGGTLAT--FTSAGF----VRRGLQEAGFT-MQKRKGFGRKREMLCGVMEQ 248 (257)
T ss_dssp ---CGGGCCHHHHHHHHHHEEEEEEEEE--SCCBHH----HHHHHHHHTEE-EEEECCSTTCCCEEEEEEC-
T ss_pred ---ChhhcCHHHHHHHHHHcCCCcEEEE--EeCCHH----HHHHHHHCCCE-EEeCCCCCCCCceEEEEecC
Confidence 4588999999999999999999994 455444 34455555 54 44444333344566666544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=104.38 Aligned_cols=131 Identities=8% Similarity=0.127 Sum_probs=88.2
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccC----c
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS----M 128 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~----l 128 (772)
...+..++.. .++.+|||+|||+|.++..|+..+ .+|+|+|+|+.+++.|++++...+ .+++|+++|+.+ +
T Consensus 275 ~~~~~~~l~~---~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~ 350 (433)
T 1uwv_A 275 VARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 (433)
T ss_dssp HHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS
T ss_pred HHHHHHhhcC---CCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh
Confidence 3344455543 467899999999999999999884 479999999999999988775444 379999999988 3
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEE
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 201 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 201 (772)
+ +.+++||+|++......+ ..+++.+.+ ++|++.+++ +.....+.+.+......+|.+..
T Consensus 351 ~-~~~~~fD~Vv~dPPr~g~----------~~~~~~l~~-~~p~~ivyv-sc~p~tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 351 P-WAKNGFDKVLLDPARAGA----------AGVMQQIIK-LEPIRIVYV-SCNPATLARDSEALLKAGYTIAR 410 (433)
T ss_dssp G-GGTTCCSEEEECCCTTCC----------HHHHHHHHH-HCCSEEEEE-ESCHHHHHHHHHHHHHTTCEEEE
T ss_pred h-hhcCCCCEEEECCCCccH----------HHHHHHHHh-cCCCeEEEE-ECChHHHHhhHHHHHHCCcEEEE
Confidence 4 566789999974322211 234444443 678776554 44434443333222233666554
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-08 Score=105.10 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=75.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+...+...+.. .++.+|||+|||+|.++..|++.+. +|+++|+++.+++.+++++. ..++++++++|+.+++
T Consensus 36 ~~i~~~Iv~~l~~---~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~-~~~~v~vi~gD~l~~~- 109 (295)
T 3gru_A 36 KNFVNKAVESANL---TKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKE-LYNNIEIIWGDALKVD- 109 (295)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHH-HCSSEEEEESCTTTSC-
T ss_pred HHHHHHHHHhcCC---CCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhc-cCCCeEEEECchhhCC-
Confidence 4555666666654 5788999999999999999999864 79999999999999988875 4568999999999998
Q ss_pred ccCCCccEEEeccccc
Q 004133 131 FMDETFDVILDKGGLD 146 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~ 146 (772)
+++.+||+|+++..++
T Consensus 110 ~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 110 LNKLDFNKVVANLPYQ 125 (295)
T ss_dssp GGGSCCSEEEEECCGG
T ss_pred cccCCccEEEEeCccc
Confidence 8888899999875543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-08 Score=105.70 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=78.9
Q ss_pred CCeEEEEcccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH--HHhhcccCcccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDE 616 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~--l~~~~~~~~~~~ 616 (772)
+.+||.||+|.|.++..|.+. .|..+|++||++|.+++.|+ ++ .++++++++|+.++ +....
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~---~~--~~~v~~~~gD~~~~~~l~~~~------- 149 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---SD--MENITLHQGDCSDLTTFEHLR------- 149 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---GG--CTTEEEEECCSSCSGGGGGGS-------
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh---cc--CCceEEEECcchhHHHHHhhc-------
Confidence 479999999999999998887 57789999999999999998 22 36899999998764 32221
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHH-ccCCCcEEEEEe
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD-ALSEQGLFIVNL 690 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~-~L~~~Gilv~Nl 690 (772)
...||+|++|.... --..+|..+.+ .|+|||+|++.-
T Consensus 150 ------------------------~~~fD~I~~d~~~~-------------~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 150 ------------------------EMAHPLIFIDNAHA-------------NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp ------------------------SSCSSEEEEESSCS-------------SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred ------------------------cCCCCEEEECCchH-------------hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 23699999976421 12678999997 999999999854
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.2e-08 Score=99.71 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=89.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|+|.++..|...+|..+|++||+++.+++.|++.. |+ .+++++.+|+.++.....
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l---~~v~~~~~d~~~~~~~~~-------- 147 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL---KGARALWGRAEVLAREAG-------- 147 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEECCHHHHTTSTT--------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CceEEEECcHHHhhcccc--------
Confidence 3567899999999999999999999999999999999999999876 55 349999999988732210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
...+||+|+...... -..+++.+.+.|+|||.|++-......+.
T Consensus 148 ----------------------~~~~fD~I~s~a~~~--------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e 191 (249)
T 3g89_A 148 ----------------------HREAYARAVARAVAP--------------LCVLSELLLPFLEVGGAAVAMKGPRVEEE 191 (249)
T ss_dssp ----------------------TTTCEEEEEEESSCC--------------HHHHHHHHGGGEEEEEEEEEEECSCCHHH
T ss_pred ----------------------cCCCceEEEECCcCC--------------HHHHHHHHHHHcCCCeEEEEEeCCCcHHH
Confidence 125799999854321 16899999999999999887543333333
Q ss_pred HHHHHHHHHH
Q 004133 698 KDMVISRMKM 707 (772)
Q Consensus 698 ~~~v~~~l~~ 707 (772)
...+...++.
T Consensus 192 ~~~~~~~l~~ 201 (249)
T 3g89_A 192 LAPLPPALER 201 (249)
T ss_dssp HTTHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344433
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=8.2e-08 Score=108.20 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=105.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.+|+|.|..+..|...++. .+|++||+++.+++.|++.. |+ . +.++.+|+.++.....
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~~~------- 168 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEAFG------- 168 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHHHC-------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhhcc-------
Confidence 34578999999999999999988865 69999999999999999875 65 3 8999999998754332
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 682 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~ 682 (772)
..||+|++|+-.+. .|+....++. +..++|+.+.+.|+|
T Consensus 169 -------------------------~~FD~Il~D~PcSg--~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 221 (464)
T 3m6w_A 169 -------------------------TYFHRVLLDAPCSG--EGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP 221 (464)
T ss_dssp -------------------------SCEEEEEEECCCCC--GGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE
T ss_pred -------------------------ccCCEEEECCCcCC--ccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57999999984431 2322222221 137899999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhccceEEE
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 715 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~ 715 (772)
||.|++...+-..+..+.++..+.+-++.....
T Consensus 222 GG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~ 254 (464)
T 3m6w_A 222 GGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLE 254 (464)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEE
T ss_pred CcEEEEEeccCchhcCHHHHHHHHHHCCCcEEE
Confidence 999999888777777778888887777654333
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=91.86 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=90.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.+|+|.|.++..+.... .+|++||+++.+++.|++.+... .+++++++.+|..+.+...
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~----------- 98 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI----------- 98 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-----------
Confidence 455799999999999999998886 69999999999999999876221 2368999999988754331
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 699 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 699 (772)
..||+|+++..- .. -..+++.+.+.|+|||.+++.... .....
T Consensus 99 ----------------------~~~D~v~~~~~~-----------~~--~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~ 141 (192)
T 1l3i_A 99 ----------------------PDIDIAVVGGSG-----------GE--LQEILRIIKDKLKPGGRIIVTAIL--LETKF 141 (192)
T ss_dssp ----------------------CCEEEEEESCCT-----------TC--HHHHHHHHHHTEEEEEEEEEEECB--HHHHH
T ss_pred ----------------------CCCCEEEECCch-----------HH--HHHHHHHHHHhcCCCcEEEEEecC--cchHH
Confidence 369999985211 11 288999999999999999988754 33344
Q ss_pred HHHHHHHHh-c
Q 004133 700 MVISRMKMV-F 709 (772)
Q Consensus 700 ~v~~~l~~v-F 709 (772)
.+.+.+++. |
T Consensus 142 ~~~~~l~~~g~ 152 (192)
T 1l3i_A 142 EAMECLRDLGF 152 (192)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 556667665 6
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9e-08 Score=100.57 Aligned_cols=147 Identities=15% Similarity=0.187 Sum_probs=102.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|+|.++..+...+|..+|++||+++.+++.|++.+ |+ ++++++.+|..+.+.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~~~~~~------------ 173 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSALA------------ 173 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGGGT------------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcchhhhcc------------
Confidence 356899999999999999999889899999999999999999887 54 379999999865421
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC-----C--CCcCCcCC--------CcHHHHHHHHHccCCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS-----G--MTCPAADF--------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~-----g--~s~Pp~~f--------~~~~fl~~~~~~L~~~ 683 (772)
..+||+|+.+.--..... . ...|...+ .-..+++.+.+.|+||
T Consensus 174 ----------------------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg 231 (276)
T 2b3t_A 174 ----------------------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG 231 (276)
T ss_dssp ----------------------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred ----------------------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 246999998521000000 0 00122222 1367899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHh-ccceEEEeecCCceEEEEEe
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~ 728 (772)
|.+++........ .+.+.+++. |..+...+--.+...+++|.
T Consensus 232 G~l~~~~~~~~~~---~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 232 GFLLLEHGWQQGE---AVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp EEEEEECCSSCHH---HHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred CEEEEEECchHHH---HHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 9999976544433 334444444 76666555445667777764
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-08 Score=104.53 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCC------chhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEE-EEeeccCcccccCCCcc
Q 004133 67 SPPPQILVPGCGN------SRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRW-RVMDMTSMQVFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~------G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f-~~~D~~~l~~~~~~sfD 137 (772)
.++.+|||+|||+ |. ..++.. + ...|+|+|+|+. . .+++| +++|+.+++ ++ ++||
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----~~v~~~i~gD~~~~~-~~-~~fD 125 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----SDADSTLIGDCATVH-TA-NKWD 125 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----CSSSEEEESCGGGCC-CS-SCEE
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----CCCEEEEECccccCC-cc-Cccc
Confidence 5788999999944 66 333433 4 247999999996 1 36889 999999987 54 7899
Q ss_pred EEEeccccccc----ccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 138 VILDKGGLDAL----MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 138 vVi~~~~l~~l----~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+|++....+.. .+..........+++++.++|||||+|++..+....
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~ 176 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 176 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 99986542211 111111234678999999999999999997765443
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-07 Score=95.30 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=81.3
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
+.+||.||+|.|.++..|... +..++++||+++.+++.|++.+.- ...++++++.+|..+. .
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~------------ 106 (219)
T 3dlc_A 44 AGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI----P------------ 106 (219)
T ss_dssp EEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC----S------------
T ss_pred CCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC----C------------
Confidence 349999999999999999988 777999999999999999998622 1246899999997542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|++..--. .+. --..+|+.+++.|+|||.+++.....
T Consensus 107 -----------------~~~~~~D~v~~~~~l~----~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 107 -----------------IEDNYADLIVSRGSVF----FWE------DVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp -----------------SCTTCEEEEEEESCGG----GCS------CHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred -----------------CCcccccEEEECchHh----hcc------CHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 1136799999842100 010 12779999999999999999875443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=102.00 Aligned_cols=132 Identities=14% Similarity=0.174 Sum_probs=90.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
+...+||.+|+|+|.++..+.... .+|++||+++.+++.|++.+ ++ .+.+++++.+|+.+++.....
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl-~~~~v~~i~~D~~~~l~~~~~------- 221 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQREER------- 221 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHHHHH-------
T ss_pred CCCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCC-CccceEEEECcHHHHHHHHHh-------
Confidence 345799999999999999888863 39999999999999999987 44 223699999999999865420
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-----CcHHHHHHHHHccCCCcEEEEEecC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...+||+||+|.-. .+.+ +.... .-..++..+.+.|+|||+|++...+
T Consensus 222 ----------------------~~~~fD~Ii~dPP~----~~~~-~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 222 ----------------------RGSTYDIILTDPPK----FGRG-THGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ----------------------HTCCBSEEEECCCS----EEEC-TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ----------------------cCCCceEEEECCcc----ccCC-chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 02579999996421 0110 00001 1257899999999999997765544
Q ss_pred CChhHHHHHHHHHHHhc
Q 004133 693 RSQATKDMVISRMKMVF 709 (772)
Q Consensus 693 ~~~~~~~~v~~~l~~vF 709 (772)
........+...+++.+
T Consensus 275 ~~~~~~~~~~~~l~~a~ 291 (332)
T 2igt_A 275 SIRASFYSMHELMRETM 291 (332)
T ss_dssp CTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 43222233344444444
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-09 Score=111.94 Aligned_cols=120 Identities=14% Similarity=0.176 Sum_probs=83.8
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
......+.+.+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++.. ...+++++++|+.+++
T Consensus 15 ~~~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~- 88 (245)
T 1yub_A 15 EKVLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQ- 88 (245)
T ss_dssp TTTHHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTT-
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcC-
Confidence 3455556666654 567899999999999999999987 579999999999988866553 3457999999999988
Q ss_pred ccC-CCccEEEecccccccccCccchHH------HHHHH----HHHHhccccCeEEEEEE
Q 004133 131 FMD-ETFDVILDKGGLDALMEPELGHKL------GNQYL----SEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 131 ~~~-~sfDvVi~~~~l~~l~~~~~~~~~------~~~~l----~ei~rvLkpGG~~ii~~ 179 (772)
+++ ++| .|+++...+.. .+. -... ...++ +.+.|+|+|||++.++.
T Consensus 89 ~~~~~~f-~vv~n~Py~~~-~~~-~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 89 FPNKQRY-KIVGNIPYHLS-TQI-IKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CCCSSEE-EEEEECCSSSC-HHH-HHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cccCCCc-EEEEeCCcccc-HHH-HHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 664 688 66665332211 000 0000 01233 66899999999876643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-07 Score=95.53 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=103.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|+|.++..|+... |..+|.+||++|.+++.|++... ..+++..+.+|+...-. ..
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~--~~~ni~~V~~d~~~p~~-~~---------- 142 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--DRRNIFPILGDARFPEK-YR---------- 142 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST--TCTTEEEEESCTTCGGG-GT----------
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH--hhcCeeEEEEeccCccc-cc----------
Confidence 455789999999999999998875 77799999999999999998864 34678999998755311 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC-----
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----- 694 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~----- 694 (772)
.....+|+|+.|+.-.+ ....++.++++.|+|||.+++-+..++
T Consensus 143 -------------------~~~~~vDvVf~d~~~~~------------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~ 191 (233)
T 4df3_A 143 -------------------HLVEGVDGLYADVAQPE------------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTT 191 (233)
T ss_dssp -------------------TTCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHT
T ss_pred -------------------cccceEEEEEEeccCCh------------hHHHHHHHHHHhccCCCEEEEEEecccCCCCC
Confidence 12367999999764332 126799999999999999998764442
Q ss_pred --hhHHHHHHHHHHHh-ccceEEEeecC--CceEEEEEe
Q 004133 695 --QATKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFGL 728 (772)
Q Consensus 695 --~~~~~~v~~~l~~v-F~~v~~~~~~~--~~N~vl~a~ 728 (772)
...++..++.|++. |.-+-.+.+.. ..+.++|+.
T Consensus 192 p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 192 EPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCCHHHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred ChHHHHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEE
Confidence 33455667777665 76555554432 345666664
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.66 E-value=6.2e-08 Score=96.66 Aligned_cols=104 Identities=13% Similarity=0.028 Sum_probs=81.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.||+|+|.++..+...+|..++++||+++.+++.|++.+....-++++++.+|..++. .
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~------------- 129 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP---S------------- 129 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---C-------------
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC---c-------------
Confidence 568999999999999999999888899999999999999998762211234999999986541 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
...||+|++... . --..+++.+++.|+|||.+++......
T Consensus 130 ------------------~~~~D~i~~~~~--------~------~~~~~l~~~~~~L~~gG~l~~~~~~~~ 169 (207)
T 1jsx_A 130 ------------------EPPFDGVISRAF--------A------SLNDMVSWCHHLPGEQGRFYALKGQMP 169 (207)
T ss_dssp ------------------CSCEEEEECSCS--------S------SHHHHHHHHTTSEEEEEEEEEEESSCC
T ss_pred ------------------cCCcCEEEEecc--------C------CHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 256999997321 1 126899999999999999998764443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-08 Score=93.96 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=83.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..+....+. |++||+|+.+++.|++.+....- +++++.+|+.+++.....
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~----------- 106 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKA----------- 106 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHH-----------
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhc-----------
Confidence 4578999999999999999887654 99999999999999988732111 799999999998765431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHH--HccCCCcEEEEEecCCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK--DALSEQGLFIVNLVSRS 694 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~--~~L~~~Gilv~Nl~~~~ 694 (772)
...+||+|++|.--. -...++++.+. +.|+|||++++......
T Consensus 107 ------------------~~~~~D~i~~~~~~~------------~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 107 ------------------QGERFTVAFMAPPYA------------MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp ------------------TTCCEEEEEECCCTT------------SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred ------------------cCCceEEEEECCCCc------------hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 124799999953110 11256778887 99999999999876554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-08 Score=97.63 Aligned_cols=119 Identities=9% Similarity=0.056 Sum_probs=85.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+||.+|+|.|.++..+...+ |..+|++||+++.+++.|++.+... ..++++++.+|+.++....
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---------- 90 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI---------- 90 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC----------
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc----------
Confidence 345689999999999999888875 5669999999999999999987321 1468999999986653221
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCC-CCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~-~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+||+|++|.-- +....... ...-....+++.+.+.|+|||.+++..+..
T Consensus 91 ----------------------~~~fD~v~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 91 ----------------------DCPVKAVMFNLGYLPSGDHSIS--TRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp ----------------------CSCEEEEEEEESBCTTSCTTCB--CCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred ----------------------cCCceEEEEcCCcccCcccccc--cCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 2679999997521 10000000 000012469999999999999999987654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.7e-08 Score=98.92 Aligned_cols=120 Identities=19% Similarity=0.184 Sum_probs=89.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+||.+|+|.|.++..+... .|..+|++||+++.+++.|++.+... ..++++++.+|+.+. ..
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~---------- 162 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--EL---------- 162 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CC----------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CC----------
Confidence 34568999999999999999888 56789999999999999999987211 146899999998654 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
....||+|++|... | ..+++.+.+.|+|||.+++...+. ...
T Consensus 163 ---------------------~~~~~D~v~~~~~~---------~------~~~l~~~~~~L~~gG~l~~~~~~~--~~~ 204 (258)
T 2pwy_A 163 ---------------------EEAAYDGVALDLME---------P------WKVLEKAALALKPDRFLVAYLPNI--TQV 204 (258)
T ss_dssp ---------------------CTTCEEEEEEESSC---------G------GGGHHHHHHHEEEEEEEEEEESCH--HHH
T ss_pred ---------------------CCCCcCEEEECCcC---------H------HHHHHHHHHhCCCCCEEEEEeCCH--HHH
Confidence 12569999996421 1 478999999999999999877443 333
Q ss_pred HHHHHHHHHh-cc
Q 004133 699 DMVISRMKMV-FN 710 (772)
Q Consensus 699 ~~v~~~l~~v-F~ 710 (772)
..++..+++. |.
T Consensus 205 ~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 205 LELVRAAEAHPFR 217 (258)
T ss_dssp HHHHHHHTTTTEE
T ss_pred HHHHHHHHHCCCc
Confidence 4556666543 44
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-08 Score=97.35 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=79.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..|... ..+|++||++|.+++.|++.+ |+ ++++++.+|...+ ....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~~~~~l-~~~~-------- 86 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI---ENTELILDGHENL-DHYV-------- 86 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC---CCEEEEESCGGGG-GGTC--------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCcHHHH-Hhhc--------
Confidence 34578999999999999999887 569999999999999999887 44 6799998665442 1111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCC-CCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~-d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
+..||+|+++...- .....+.. ..-....+|+.+.+.|+|||.+++-++..
T Consensus 87 -----------------------~~~fD~v~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 138 (185)
T 3mti_A 87 -----------------------REPIRAAIFNLGYLPSADKSVIT--KPHTTLEAIEKILDRLEVGGRLAIMIYYG 138 (185)
T ss_dssp -----------------------CSCEEEEEEEEC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred -----------------------cCCcCEEEEeCCCCCCcchhccc--ChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 35799999874111 00000000 00112468899999999999999887754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.4e-08 Score=106.95 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=90.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC---------------------------------------C
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~---------------------------------------~ 92 (772)
.+...+...... .++.+|||++||+|.++..++..+. .
T Consensus 182 ~lAa~ll~~~~~---~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 258 (385)
T 3ldu_A 182 TLAAGLIYLTPW---KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385)
T ss_dssp HHHHHHHHTSCC---CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHhhCC---CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence 344555555544 5678999999999999988877531 3
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccc
Q 004133 93 GITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 170 (772)
Q Consensus 93 ~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLk 170 (772)
.|+|+|+++.|++.|++++...+. .++|.++|+.+++ . .++||+|+++..+..-... ...+..+.+++.++||
T Consensus 259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~-~-~~~~D~Iv~NPPyg~rl~~---~~~l~~ly~~lg~~lk 333 (385)
T 3ldu_A 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFK-S-EDEFGFIITNPPYGERLED---KDSVKQLYKELGYAFR 333 (385)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCC-C-SCBSCEEEECCCCCCSHHH---HHHHHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcC-c-CCCCcEEEECCCCcCccCC---HHHHHHHHHHHHHHHh
Confidence 599999999999999888755443 6999999999987 4 4689999997765422211 1125667777777887
Q ss_pred c--CeEEEEEEcC
Q 004133 171 S--GGKFVCLTLA 181 (772)
Q Consensus 171 p--GG~~ii~~~~ 181 (772)
+ ||.+++++-.
T Consensus 334 ~~~g~~~~iit~~ 346 (385)
T 3ldu_A 334 KLKNWSYYLITSY 346 (385)
T ss_dssp TSBSCEEEEEESC
T ss_pred hCCCCEEEEEECC
Confidence 6 8888888754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-07 Score=94.01 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=97.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|+|.++.+|....|..+|++||+++.+++.|++.... .+++.++.+|+.+......
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~------------ 139 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--RENIIPILGDANKPQEYAN------------ 139 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--CTTEEEEECCTTCGGGGTT------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--CCCeEEEECCCCCcccccc------------
Confidence 45689999999999999999998767999999999999999988754 3789999999865211011
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC--Ch----
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--SQ---- 695 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~--~~---- 695 (772)
. ...||+|+.|+...+ ....+++.+.+.|+|||.+++-+..+ +.
T Consensus 140 -----------------~-~~~~D~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 189 (230)
T 1fbn_A 140 -----------------I-VEKVDVIYEDVAQPN------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP 189 (230)
T ss_dssp -----------------T-SCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH
T ss_pred -----------------c-CccEEEEEEecCChh------------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCH
Confidence 1 146999997652221 23678999999999999999853211 11
Q ss_pred -hHHHHHHHHHHHh-ccceEEEeecC--CceEEEEEec
Q 004133 696 -ATKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFGLS 729 (772)
Q Consensus 696 -~~~~~v~~~l~~v-F~~v~~~~~~~--~~N~vl~a~~ 729 (772)
......+..|.+. |..+....+.. ..+.+++|.+
T Consensus 190 ~~~~~~~l~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 190 KEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred HHhhHHHHHHHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence 1121223355554 65444444322 2355666654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.5e-08 Score=98.95 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=82.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++..+...+|..++++||+++.+++.|++.. ++++++.+|+.++. .
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~---~----------- 92 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----PNTNFGKADLATWK---P----------- 92 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----TTSEEEECCTTTCC---C-----------
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----CCcEEEECChhhcC---c-----------
Confidence 4557899999999999999999888889999999999999999882 57899999976531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
...||+|++..- ...+. --..+|+.+++.|+|||.+++.....
T Consensus 93 --------------------~~~fD~v~~~~~----l~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 93 --------------------AQKADLLYANAV----FQWVP------DHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp --------------------SSCEEEEEEESC----GGGST------THHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred --------------------cCCcCEEEEeCc----hhhCC------CHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 357999998321 01111 12689999999999999999988654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-07 Score=93.95 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=96.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|+|.|.++..|...+ |..+|++||+++.+++.|++..... ++++++.+|+.+......
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~----------- 139 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRA----------- 139 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTT-----------
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhc-----------
Confidence 45689999999999999999875 5579999999999999998887542 689999999865311000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC----h-
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----Q- 695 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~----~- 695 (772)
....||+|++|....+ ....++..+.+.|+|||.+++-+.... .
T Consensus 140 -------------------~~~~~D~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 188 (227)
T 1g8a_A 140 -------------------LVPKVDVIFEDVAQPT------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE 188 (227)
T ss_dssp -------------------TCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC
T ss_pred -------------------ccCCceEEEECCCCHh------------HHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCC
Confidence 0247999998653111 124569999999999999988642221 1
Q ss_pred --hHHHHHHHHHHHhccceEEEeecC--CceEEEEEe
Q 004133 696 --ATKDMVISRMKMVFNHLFCLQLEE--DVNLVLFGL 728 (772)
Q Consensus 696 --~~~~~v~~~l~~vF~~v~~~~~~~--~~N~vl~a~ 728 (772)
.+....+..+.+.|..+....+.. ..+.++++.
T Consensus 189 ~~~~~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 189 PEQVFREVERELSEYFEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEE
T ss_pred hhhhhHHHHHHHHhhceeeeEeccCcccCCCEEEEEE
Confidence 122223444555576655555432 234455554
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-07 Score=92.22 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=83.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|+|.|.++..+... +..+|++||+++.+++.|++.+... ..++++++.+|+.+++.....
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------- 112 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------- 112 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh----------
Confidence 4568999999999998877764 5569999999999999999887321 135799999999998765420
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHH--HHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~--~~~L~~~Gilv~Nl~~~ 693 (772)
...+||+|++|.- . ..-....+++.+ .+.|+|||++++.....
T Consensus 113 -------------------~~~~fD~i~~~~~---~--------~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 -------------------EKLQFDLVLLDPP---Y--------AKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp -------------------TTCCEEEEEECCC---G--------GGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred -------------------cCCCCCEEEECCC---C--------CchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 1257999998521 0 011246777777 78899999999877554
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.9e-08 Score=101.97 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=88.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+||.+|+|.|.++..+... .|..+|++||+++.+++.|++.+... ..++++++.+|+.+++ .
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~--------- 176 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---S--------- 176 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---C---------
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---c---------
Confidence 34578999999999999999887 67789999999999999999987332 2367999999986521 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
...||+|++|+.. | ..+|+.+.+.|+|||.+++..... ...
T Consensus 177 ----------------------~~~fD~Vi~~~~~---------~------~~~l~~~~~~LkpgG~l~i~~~~~--~~~ 217 (275)
T 1yb2_A 177 ----------------------DQMYDAVIADIPD---------P------WNHVQKIASMMKPGSVATFYLPNF--DQS 217 (275)
T ss_dssp ----------------------SCCEEEEEECCSC---------G------GGSHHHHHHTEEEEEEEEEEESSH--HHH
T ss_pred ----------------------CCCccEEEEcCcC---------H------HHHHHHHHHHcCCCCEEEEEeCCH--HHH
Confidence 2569999995421 1 478999999999999999877433 233
Q ss_pred HHHHHHHHHh
Q 004133 699 DMVISRMKMV 708 (772)
Q Consensus 699 ~~v~~~l~~v 708 (772)
..+...+++.
T Consensus 218 ~~~~~~l~~~ 227 (275)
T 1yb2_A 218 EKTVLSLSAS 227 (275)
T ss_dssp HHHHHHSGGG
T ss_pred HHHHHHHHHC
Confidence 4445555543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=105.36 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=88.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC---------------------------------------C
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~---------------------------------------~ 92 (772)
.+...+...... .++..|||++||+|.++..++..+. .
T Consensus 188 ~lAa~ll~l~~~---~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 188 TMAAALVLLTSW---HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp HHHHHHHHHSCC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHhCC---CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 444555555554 5678999999999999988876532 2
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccc
Q 004133 93 GITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 170 (772)
Q Consensus 93 ~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLk 170 (772)
.|+|+|+++.|++.|++++...+. .++|.++|+.+++ . .++||+|+++..+..-... ...+..+.+.+.++||
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~-~-~~~fD~Iv~NPPYg~rl~~---~~~l~~ly~~lg~~lk 339 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQ-T-EDEYGVVVANPPYGERLED---EEAVRQLYREMGIVYK 339 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCC-C-CCCSCEEEECCCCCCSHHH---HHHHHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCC-C-CCCCCEEEECCCCccccCC---chhHHHHHHHHHHHHh
Confidence 499999999999999888765543 5999999999987 4 4589999998654322111 1124556666777776
Q ss_pred c--CeEEEEEEcC
Q 004133 171 S--GGKFVCLTLA 181 (772)
Q Consensus 171 p--GG~~ii~~~~ 181 (772)
+ ||.+++++-.
T Consensus 340 ~~~g~~~~iit~~ 352 (393)
T 3k0b_A 340 RMPTWSVYVLTSY 352 (393)
T ss_dssp TCTTCEEEEEECC
T ss_pred cCCCCEEEEEECC
Confidence 6 8998888754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-07 Score=95.90 Aligned_cols=106 Identities=22% Similarity=0.329 Sum_probs=83.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++..+...+|..++++||+++.+++.|++.+.- ..+++++.+|+.++ .
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~----~----------- 105 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG--NLKVKYIEADYSKY----D----------- 105 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS--CTTEEEEESCTTTC----C-----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc--CCCEEEEeCchhcc----C-----------
Confidence 456899999999999999999999989999999999999999999853 23899999997653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH---HHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG---SFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~---~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
. ...||+|++.. . -..+-+. .+|+.+++.|+|||.+++.....
T Consensus 106 ------------------~-~~~fD~v~~~~--~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 106 ------------------F-EEKYDMVVSAL--S---------IHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp ------------------C-CSCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ------------------C-CCCceEEEEeC--c---------cccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 1 25799999842 1 1122222 48999999999999999865443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-07 Score=103.24 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=98.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+||.||+|.|.++..+....|..+|++||+++.+++.|++.+ |+....+++++.+|+.+.+ .
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---~---------- 289 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E---------- 289 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---C----------
T ss_pred CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---C----------
Confidence 47999999999999999999999999999999999999999887 4432346788999987631 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 699 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 699 (772)
..+||+|++|.--. . +.. ...-....+++.+.+.|+|||.+++- ..+....
T Consensus 290 ---------------------~~~fD~Ii~nppfh--~-~~~--~~~~~~~~~l~~~~~~LkpgG~l~iv-~n~~~~~-- 340 (375)
T 4dcm_A 290 ---------------------PFRFNAVLCNPPFH--Q-QHA--LTDNVAWEMFHHARRCLKINGELYIV-ANRHLDY-- 340 (375)
T ss_dssp ---------------------TTCEEEEEECCCC------------CCHHHHHHHHHHHHEEEEEEEEEE-EETTSCH--
T ss_pred ---------------------CCCeeEEEECCCcc--c-Ccc--cCHHHHHHHHHHHHHhCCCCcEEEEE-EECCcCH--
Confidence 35799999852100 0 000 01112357999999999999999983 3344333
Q ss_pred HHHHHHHHhccceEEEeecCCceEEEEEec
Q 004133 700 MVISRMKMVFNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 700 ~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~ 729 (772)
-..+.+.|..+..+. .+..=.|+-+..
T Consensus 341 --~~~l~~~fg~~~~~a-~~~~F~V~~~~~ 367 (375)
T 4dcm_A 341 --FHKLKKIFGNCTTIA-TNNKFVVLKAVK 367 (375)
T ss_dssp --HHHHHHHHSCCEEEE-ECSSEEEEEEEC
T ss_pred --HHHHHHhcCCEEEEe-eCCCEEEEEEcC
Confidence 345677888766655 333334444443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=94.62 Aligned_cols=147 Identities=12% Similarity=0.122 Sum_probs=100.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+.... |..+|++||+++.+++.|++.+.-..-++++++.+|+.++ .
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~---------- 101 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI----P---------- 101 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC----S----------
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC----C----------
Confidence 345799999999999998888886 7779999999999999999987221124799999997543 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh---
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA--- 696 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~--- 696 (772)
.....||+|++...-. .+. -...+|+.+.+.|+|||.+++..+.....
T Consensus 102 -------------------~~~~~fD~v~~~~~l~----~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 152 (219)
T 3dh0_A 102 -------------------LPDNTVDFIFMAFTFH----ELS------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKG 152 (219)
T ss_dssp -------------------SCSSCEEEEEEESCGG----GCS------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS
T ss_pred -------------------CCCCCeeEEEeehhhh----hcC------CHHHHHHHHHHHhCCCeEEEEEEecccccccC
Confidence 1136799999842111 111 12789999999999999999865443210
Q ss_pred -------HHHHHHHHHHHh-ccceEEEeecCCceEEEEEecCC
Q 004133 697 -------TKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 697 -------~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
..+.+...+++. |..+...... .....+++.+..
T Consensus 153 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~-~~~~~~~~~k~~ 194 (219)
T 3dh0_A 153 PPPEEVYSEWEVGLILEDAGIRVGRVVEVG-KYCFGVYAMIVK 194 (219)
T ss_dssp CCGGGSCCHHHHHHHHHHTTCEEEEEEEET-TTEEEEEEECC-
T ss_pred CchhcccCHHHHHHHHHHCCCEEEEEEeeC-CceEEEEEEecc
Confidence 134556666665 6555554433 355666666543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=98.54 Aligned_cols=86 Identities=10% Similarity=0.212 Sum_probs=69.5
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+...+...+.. .++.+|||+|||+|.++..|++.+ .+|+++|+++.|++.++++... ..+++++++|+.+++
T Consensus 15 ~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-~~~v~~i~~D~~~~~- 88 (255)
T 3tqs_A 15 SFVLQKIVSAIHP---QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-QKNITIYQNDALQFD- 88 (255)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-CTTEEEEESCTTTCC-
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-CCCcEEEEcchHhCC-
Confidence 3455566677665 578899999999999999999987 4799999999999999888743 568999999999987
Q ss_pred ccC----CCccEEEecc
Q 004133 131 FMD----ETFDVILDKG 143 (772)
Q Consensus 131 ~~~----~sfDvVi~~~ 143 (772)
+++ +.|| |+++-
T Consensus 89 ~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 89 FSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp GGGSCCSSCEE-EEEEC
T ss_pred HHHhccCCCeE-EEecC
Confidence 543 5688 55543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-07 Score=102.76 Aligned_cols=122 Identities=13% Similarity=0.146 Sum_probs=90.4
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC---------------------------------------C
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------------H 92 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~---------------------------------------~ 92 (772)
.+...+...... .++..|||++||+|.++...+..+. .
T Consensus 181 ~LAaall~l~~~---~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 181 NMAAAIILLSNW---FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp HHHHHHHHHTTC---CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHhCC---CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 455555555554 5678999999999999988876532 2
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccc
Q 004133 93 GITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 170 (772)
Q Consensus 93 ~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLk 170 (772)
.|+|+|+++.|++.|++++...+. .++|.++|+.+++ .+ .+||+|+++-.+..-... ......+.+++.+.||
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~-~~-~~fD~Iv~NPPYG~rl~~---~~~l~~ly~~lg~~lk 332 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFK-TN-KINGVLISNPPYGERLLD---DKAVDILYNEMGETFA 332 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCC-CC-CCSCEEEECCCCTTTTSC---HHHHHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCC-cc-CCcCEEEECCchhhccCC---HHHHHHHHHHHHHHHh
Confidence 499999999999999888765543 5999999999987 44 589999998665432221 1125667777777777
Q ss_pred c--CeEEEEEEcC
Q 004133 171 S--GGKFVCLTLA 181 (772)
Q Consensus 171 p--GG~~ii~~~~ 181 (772)
+ ||.+++++-.
T Consensus 333 ~~~g~~~~iit~~ 345 (384)
T 3ldg_A 333 PLKTWSQFILTND 345 (384)
T ss_dssp TCTTSEEEEEESC
T ss_pred hCCCcEEEEEECC
Confidence 6 9998888753
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-07 Score=100.29 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=95.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.+|+|.|..+..|...++ ..+|++||+++.+++.|++.+ |+ ++++++.+|+.++.. .
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~~~-~-------- 184 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGE-L-------- 184 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGG-G--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhccc-c--------
Confidence 3456899999999999999998875 469999999999999999887 65 369999999877522 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 682 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~ 682 (772)
...||+|++|+-.+. .|+.-..++. ....+|+.+.+.|+|
T Consensus 185 ------------------------~~~fD~Il~d~Pcsg--~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp 238 (315)
T 1ixk_A 185 ------------------------NVEFDKILLDAPCTG--SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP 238 (315)
T ss_dssp ------------------------CCCEEEEEEECCTTS--TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred ------------------------cccCCEEEEeCCCCC--cccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 246999999874321 1221111111 125899999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhcc
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMVFN 710 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 710 (772)
||.+++...+-.....+.++..+.+-+.
T Consensus 239 GG~lv~stcs~~~~Ene~~v~~~l~~~~ 266 (315)
T 1ixk_A 239 GGILVYSTCSLEPEENEFVIQWALDNFD 266 (315)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred CCEEEEEeCCCChHHhHHHHHHHHhcCC
Confidence 9999998766666555666666554443
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=101.53 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=87.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhcC-------CC----CCCCeEEEEccHHHHHHhh
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG-------FT----QDKSLKVHITDGIKFVREM 608 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fg-------~~----~~~rl~v~i~Dg~~~l~~~ 608 (772)
....+||.||+|.|.++..+... .|..+|++||++|.+++.|++.+. +. ..++++++.+|+.+.+...
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 34568999999999999999887 466799999999999999999763 11 1368999999987653222
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 609 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
. ...||+|++|... | ..++..+.+.|+|||.|++
T Consensus 184 ~-------------------------------~~~fD~V~~~~~~---------~------~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 184 K-------------------------------SLTFDAVALDMLN---------P------HVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp -----------------------------------EEEEEECSSS---------T------TTTHHHHGGGEEEEEEEEE
T ss_pred C-------------------------------CCCeeEEEECCCC---------H------HHHHHHHHHhcCCCcEEEE
Confidence 2 2469999996522 1 2278999999999999997
Q ss_pred EecCCChhHHHHHHHHHHHh
Q 004133 689 NLVSRSQATKDMVISRMKMV 708 (772)
Q Consensus 689 Nl~~~~~~~~~~v~~~l~~v 708 (772)
-.. .......+++.+++.
T Consensus 218 ~~~--~~~~~~~~~~~l~~~ 235 (336)
T 2b25_A 218 YVV--NITQVIELLDGIRTC 235 (336)
T ss_dssp EES--SHHHHHHHHHHHHHH
T ss_pred EeC--CHHHHHHHHHHHHhc
Confidence 664 334444556666653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.59 E-value=6e-08 Score=97.12 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=80.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC--CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--DKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~--~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+||.+|+|+|.++..+.... ..+|++||+|+.+++.|++.+.... +++++++.+|+.+++....
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~----------- 121 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ----------- 121 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC-----------
T ss_pred CCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc-----------
Confidence 4689999999999988766553 3589999999999999999873211 1589999999988754321
Q ss_pred cccccccCCCCCCCCCCCCCCCc-eeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHH--HHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~-yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~--~~~L~~~Gilv~Nl~~~~ 694 (772)
... ||+|++|.- .. .-....+++.+ .+.|+|||++++......
T Consensus 122 --------------------~~~~fD~I~~~~~---~~--------~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 122 --------------------NQPHFDVVFLDPP---FH--------FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp --------------------SSCCEEEEEECCC---SS--------SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred --------------------cCCCCCEEEECCC---CC--------CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 257 999998531 00 01235778888 557999999998775544
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=103.69 Aligned_cols=116 Identities=10% Similarity=0.140 Sum_probs=83.9
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc-cc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-VF 131 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-~~ 131 (772)
...+.+++.. .+.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+ .+++|+++|+.++. .+
T Consensus 203 ~~~~~~~~~~----~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~ 277 (369)
T 3bt7_A 203 LEWALDVTKG----SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 277 (369)
T ss_dssp HHHHHHHTTT----CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHH
T ss_pred HHHHHHHhhc----CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHH
Confidence 3444444442 3578999999999999999875 4589999999999999988775544 47999999998752 12
Q ss_pred cC--------------CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 132 MD--------------ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 132 ~~--------------~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
.. .+||+|+....- ..+..++.+.|+++|++++++.......+
T Consensus 278 ~~~~~~~~l~~~~~~~~~fD~Vv~dPPr-------------~g~~~~~~~~l~~~g~ivyvsc~p~t~ar 334 (369)
T 3bt7_A 278 NGVREFNRLQGIDLKSYQCETIFVDPPR-------------SGLDSETEKMVQAYPRILYISCNPETLCK 334 (369)
T ss_dssp SSCCCCTTGGGSCGGGCCEEEEEECCCT-------------TCCCHHHHHHHTTSSEEEEEESCHHHHHH
T ss_pred hhccccccccccccccCCCCEEEECcCc-------------cccHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 21 379999853211 12345677778899999999887655443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-07 Score=105.26 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=102.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.+|+|.|..+..|...+++ .+|++||+++..++.+++.. |+ .++.++.+|+.++.....
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---~nv~v~~~Da~~l~~~~~------- 173 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---SNAIVTNHAPAELVPHFS------- 173 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---SSEEEECCCHHHHHHHHT-------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhhhcc-------
Confidence 34578999999999999999887654 69999999999999999875 66 359999999998865432
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 682 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~ 682 (772)
..||+|++|+-.+. .|+....++. +..++|..+.+.|+|
T Consensus 174 -------------------------~~FD~Il~DaPCSg--~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 226 (456)
T 3m4x_A 174 -------------------------GFFDRIVVDAPCSG--EGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN 226 (456)
T ss_dssp -------------------------TCEEEEEEECCCCC--GGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred -------------------------ccCCEEEECCCCCC--ccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56999999984331 2321111111 234889999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhcc
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMVFN 710 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 710 (772)
||.|++...+-..+..+.++..+.+-++
T Consensus 227 GG~LvYsTCs~~~eEne~vv~~~l~~~~ 254 (456)
T 3m4x_A 227 KGQLIYSTCTFAPEENEEIISWLVENYP 254 (456)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred CcEEEEEEeecccccCHHHHHHHHHhCC
Confidence 9999999888877777778888777665
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=99.33 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=83.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+....|..++++||+++.+++.|++.+.-..-++++++.+|+.++ .
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~----------- 100 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL----P----------- 100 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC----C-----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC----C-----------
Confidence 4567999999999999999999998899999999999999999987322224799999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
.....||+|++..--. .+.. ...+|+.+++.|+|||.+++-.
T Consensus 101 ------------------~~~~~fD~v~~~~~l~----~~~~------~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 101 ------------------FEDSSFDHIFVCFVLE----HLQS------PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp ------------------SCTTCEEEEEEESCGG----GCSC------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCCeeEEEEechhh----hcCC------HHHHHHHHHHHcCCCcEEEEEE
Confidence 1136799999842111 1111 2589999999999999999854
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=95.08 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=79.3
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.++..+..... .+|++||+++.+++.|++.+....-++++++.+|+.+++...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~-------------- 119 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-------------- 119 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--------------
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhc--------------
Confidence 46899999999999987665532 489999999999999998873211157999999999986442
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHH--ccCCCcEEEEEecC
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNLVS 692 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~--~L~~~Gilv~Nl~~ 692 (772)
...||+|++|.. . ..-....+++.+.+ .|+|||++++....
T Consensus 120 ------------------~~~fD~V~~~~p---~--------~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 120 ------------------GTPHNIVFVDPP---F--------RRGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ------------------CCCEEEEEECCS---S--------STTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred ------------------CCCCCEEEECCC---C--------CCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 257999998532 0 00123677888876 49999999987654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-07 Score=95.69 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=82.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+....+. +|++||+++.+++.|++.+. .++++++.+|+.++ .
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~----~----------- 103 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDI----A----------- 103 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGC----C-----------
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhC----C-----------
Confidence 35689999999999999999988654 89999999999999999987 57899999998543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....||+|++.. ....+. --..+|+.+++.|+|||.+++.+.
T Consensus 104 ------------------~~~~~fD~v~~~~----~l~~~~------~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 104 ------------------IEPDAYNVVLSSL----ALHYIA------SFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp ------------------CCTTCEEEEEEES----CGGGCS------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------------------CCCCCeEEEEEch----hhhhhh------hHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1136799999832 111111 127899999999999999998754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=97.80 Aligned_cols=117 Identities=19% Similarity=0.253 Sum_probs=89.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.+|+|.|.++..+... .|..+|++||++|.+++.|++.+ |+ .++++++.+|..++ ..
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---~~------- 178 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERVTIKVRDISEG---FD------- 178 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGEEEECCCGGGC---CS-------
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHHc---cc-------
Confidence 34568999999999999999988 56789999999999999999987 43 35799999998764 11
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
...||+|++|... | ..+++.+.+.|+|||.+++...+. .
T Consensus 179 ------------------------~~~~D~V~~~~~~---------~------~~~l~~~~~~L~pgG~l~~~~~~~--~ 217 (277)
T 1o54_A 179 ------------------------EKDVDALFLDVPD---------P------WNYIDKCWEALKGGGRFATVCPTT--N 217 (277)
T ss_dssp ------------------------CCSEEEEEECCSC---------G------GGTHHHHHHHEEEEEEEEEEESSH--H
T ss_pred ------------------------CCccCEEEECCcC---------H------HHHHHHHHHHcCCCCEEEEEeCCH--H
Confidence 2469999995411 1 478999999999999999877533 2
Q ss_pred HHHHHHHHHHHh-cc
Q 004133 697 TKDMVISRMKMV-FN 710 (772)
Q Consensus 697 ~~~~v~~~l~~v-F~ 710 (772)
....+.+.|++. |.
T Consensus 218 ~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 218 QVQETLKKLQELPFI 232 (277)
T ss_dssp HHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHHCCCc
Confidence 334456666553 44
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-07 Score=93.51 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=80.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-----CCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-----~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
..+.+||.||+|.|.++..|....+..++++||+++.+++.|++.+.... .++++++.+|... ..
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~------ 97 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY----QD------ 97 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS----CC------
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc----cc------
Confidence 34579999999999999999998887899999999999999999974321 1379999999621 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEEe
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....+||+|++.- . -..+-. ..+|+.+++.|+|||++++..
T Consensus 98 -----------------------~~~~~fD~v~~~~----~-------l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 98 -----------------------KRFHGYDAATVIE----V-------IEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp -----------------------GGGCSCSEEEEES----C-------GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -----------------------ccCCCcCEEeeHH----H-------HHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 0125799999721 1 111211 579999999999999887654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.8e-07 Score=88.75 Aligned_cols=141 Identities=16% Similarity=0.050 Sum_probs=97.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.||+|.|.++..|... ..++++||+++.+++.|++.+ ++++++.+|+.++ ..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~--~~-------------- 98 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH-----PSVTFHHGTITDL--SD-------------- 98 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGG--GG--------------
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-----CCCeEEeCccccc--cc--------------
Confidence 578999999999999999887 358999999999999999984 3689999998764 11
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh-------
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ------- 695 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~------- 695 (772)
....||+|++..--. .+ |+. --..+|+.+++.|+|||.+++.......
T Consensus 99 -----------------~~~~fD~v~~~~~l~----~~--~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 153 (203)
T 3h2b_A 99 -----------------SPKRWAGLLAWYSLI----HM--GPG--ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHP 153 (203)
T ss_dssp -----------------SCCCEEEEEEESSST----TC--CTT--THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCS
T ss_pred -----------------CCCCeEEEEehhhHh----cC--CHH--HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhch
Confidence 136799999832110 01 111 1278999999999999999988765432
Q ss_pred ------hHHHHHHHHHHHh-ccceEEEeecCCceEEEEEecCC
Q 004133 696 ------ATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 696 ------~~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
-..+.+.+.+++. |.-+............+...+..
T Consensus 154 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~~l~~~~~~ 196 (203)
T 3h2b_A 154 VATAYRWPLPELAQALETAGFQVTSSHWDPRFPHAYLTAEASL 196 (203)
T ss_dssp SSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEEEEEEEECC
T ss_pred hhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcchhhhhhhhh
Confidence 1234555666555 55444444444445555554443
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2.5e-07 Score=98.30 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=85.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..+...++ .+|++||+++.+++.|++.+ |+ .++++++.+|..++ .
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 135 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEEF----D-------- 135 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC--SSCEEEEECCGGGC----C--------
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECCHHHc----C--------
Confidence 3456899999999999999998876 69999999999999999887 43 45899999998764 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC---cCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp---~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..||+|+... ....+..|. ..-.-..+|+.+.+.|+|||.+++..+...
T Consensus 136 ------------------------~~fD~v~~~~----~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 136 ------------------------EPVDRIVSLG----AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp ------------------------CCCSEEEEES----CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred ------------------------CCccEEEEcc----hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 5699999731 101111110 001126899999999999999999887654
Q ss_pred h
Q 004133 695 Q 695 (772)
Q Consensus 695 ~ 695 (772)
.
T Consensus 188 ~ 188 (302)
T 3hem_A 188 D 188 (302)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=102.69 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=81.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.|| |+|.++..+....|..+|++||+||.++++|++++ |+ + +++++.+|+.+++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~--~-~v~~~~~D~~~~l~~~---------- 237 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY--E-DIEIFTFDLRKPLPDY---------- 237 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC--C-CEEEECCCTTSCCCTT----------
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--C-CEEEEEChhhhhchhh----------
Confidence 357999999 99999999988877679999999999999999986 65 2 7999999987643210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCc-EEEEEecC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVS 692 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~G-ilv~Nl~~ 692 (772)
....||+|++|. + . + +.. ...|++.+.+.|+||| ++++.+..
T Consensus 238 ---------------------~~~~fD~Vi~~~--p--~-~----~~~--~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 238 ---------------------ALHKFDTFITDP--P--E-T----LEA--IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp ---------------------TSSCBSEEEECC--C--S-S----HHH--HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred ---------------------ccCCccEEEECC--C--C-c----hHH--HHHHHHHHHHHcccCCeEEEEEEec
Confidence 024799999953 1 0 0 112 3889999999999999 55666655
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=97.72 Aligned_cols=105 Identities=8% Similarity=0.031 Sum_probs=77.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-----------------CCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-----------------TQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-----------------~~~~rl~v~i~Dg~~~ 604 (772)
...+||++|+|.|..+.+|.+. +.+|++||++|.+++.|++..+. ....+++++++|..++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4579999999999999999887 35899999999999999887653 1246899999998764
Q ss_pred HHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCc
Q 004133 605 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG 684 (772)
Q Consensus 605 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~G 684 (772)
-.. ....||+|+.- .. -..+ |++ ....+++.+.+.|+|||
T Consensus 146 ~~~--------------------------------~~~~FD~V~~~-~~---l~~l--~~~--~~~~~l~~~~~~LkpGG 185 (252)
T 2gb4_A 146 PRA--------------------------------NIGKFDRIWDR-GA---LVAI--NPG--DHDRYADIILSLLRKEF 185 (252)
T ss_dssp GGG--------------------------------CCCCEEEEEES-SS---TTTS--CGG--GHHHHHHHHHHTEEEEE
T ss_pred Ccc--------------------------------cCCCEEEEEEh-hh---hhhC--CHH--HHHHHHHHHHHHcCCCe
Confidence 111 01579999851 11 1112 221 23579999999999999
Q ss_pred EEEE
Q 004133 685 LFIV 688 (772)
Q Consensus 685 ilv~ 688 (772)
.|++
T Consensus 186 ~l~l 189 (252)
T 2gb4_A 186 QYLV 189 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9864
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-07 Score=93.93 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+... ..+|++||+++.+++.|++. ++++.+|+.+++....
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~----------- 98 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLP----------- 98 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSC-----------
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcC-----------
Confidence 44579999999999999999887 35899999999999999887 7899999999875543
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..+||+|++.- ....+ +++ --..+|+.+++.|+|||.+++......
T Consensus 99 --------------------~~~fD~i~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 99 --------------------DKYLDGVMISH----FVEHL--DPE--RLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp --------------------TTCBSEEEEES----CGGGS--CGG--GHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred --------------------CCCeeEEEECC----chhhC--CcH--HHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 36799999721 10011 111 116899999999999999999886543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=96.44 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=82.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
..+.+||.||+|.|.++..+... +..+|++||+++.+++.|++.+ |+ .++++++.+|..++ .
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 109 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGL--QNRVTGIVGSMDDL----P-------- 109 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CcCcEEEEcChhhC----C--------
Confidence 45679999999999999999988 7779999999999999999886 44 46799999998542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....||+|++.. . -..+--..+|+.+++.|+|||.+++...
T Consensus 110 ---------------------~~~~~fD~i~~~~--~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 110 ---------------------FRNEELDLIWSEG--A---------IYNIGFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp ---------------------CCTTCEEEEEESS--C---------GGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEEEEEEcC--C---------ceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 1136799999721 1 1111237899999999999999998754
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-07 Score=91.90 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=78.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|... ..+|++||+++.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------- 140 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA------------- 140 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc-------------
Confidence 45678999999999999999888 469999999999999999987321124799999998764222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...||+|+++..-. .+. ..+.+.|+|||.+++.+..
T Consensus 141 --------------------~~~~D~i~~~~~~~-----------~~~-----~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 --------------------RAPFDAIIVTAAPP-----------EIP-----TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp --------------------GCCEEEEEESSBCS-----------SCC-----THHHHTEEEEEEEEEEECS
T ss_pred --------------------CCCccEEEEccchh-----------hhh-----HHHHHhcccCcEEEEEEcC
Confidence 25799999964222 111 2578999999999999865
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=98.76 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=84.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+.+||.||+|.|.++..|... ..+|++||+++.+++.|++.+.-. ..++++++.+|+.+....
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------------- 132 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------------- 132 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-------------
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-------------
Confidence 4579999999999999999887 469999999999999999987321 236899999998765311
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
....||+|++..-- ..+. -...+|+.+++.|+|||.+++..+.+..
T Consensus 133 -------------------~~~~fD~v~~~~~l----~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (285)
T 4htf_A 133 -------------------LETPVDLILFHAVL----EWVA------DPRSVLQTLWSVLRPGGVLSLMFYNAHG 178 (285)
T ss_dssp -------------------CSSCEEEEEEESCG----GGCS------CHHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred -------------------cCCCceEEEECchh----hccc------CHHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence 13679999984211 1111 1168999999999999999998876544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=94.39 Aligned_cols=104 Identities=9% Similarity=-0.005 Sum_probs=75.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC------------CCCCeEEEEccHHHHHHhh
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREM 608 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------------~~~rl~v~i~Dg~~~l~~~ 608 (772)
+...+||++|+|.|..+.+|.+. ..+|++||+++.|++.|++..+.. ...+++++++|..++-...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 34579999999999999999887 359999999999999999987541 1357999999986642110
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEE
Q 004133 609 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 686 (772)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gil 686 (772)
..+||+|+.-. .- ..+ |++ ....+++.+++.|+|||.+
T Consensus 99 --------------------------------~~~fD~v~~~~-~l---~~l--~~~--~~~~~l~~~~r~LkpgG~~ 136 (203)
T 1pjz_A 99 --------------------------------IGHCAAFYDRA-AM---IAL--PAD--MRERYVQHLEALMPQACSG 136 (203)
T ss_dssp --------------------------------HHSEEEEEEES-CG---GGS--CHH--HHHHHHHHHHHHSCSEEEE
T ss_pred --------------------------------CCCEEEEEECc-ch---hhC--CHH--HHHHHHHHHHHHcCCCcEE
Confidence 04699998511 10 111 111 1246899999999999973
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=92.50 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=87.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+... +..+|++||+++.+++.|++.+....-++++++.+|..++ .
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----------- 122 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD----V----------- 122 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT----C-----------
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc----C-----------
Confidence 34579999999999999998875 6669999999999999999987322122399999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+.+.. .+. -..+++.+.+.|+|||.+++..+... ..+.
T Consensus 123 --------------------~~~fD~i~~~~~------------~~~-~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~ 167 (205)
T 3grz_A 123 --------------------DGKFDLIVANIL------------AEI-LLDLIPQLDSHLNEDGQVIFSGIDYL--QLPK 167 (205)
T ss_dssp --------------------CSCEEEEEEESC------------HHH-HHHHGGGSGGGEEEEEEEEEEEEEGG--GHHH
T ss_pred --------------------CCCceEEEECCc------------HHH-HHHHHHHHHHhcCCCCEEEEEecCcc--cHHH
Confidence 257999998531 111 26889999999999999998644332 2334
Q ss_pred HHHHHHHh-ccc
Q 004133 701 VISRMKMV-FNH 711 (772)
Q Consensus 701 v~~~l~~v-F~~ 711 (772)
+.+.+++. |..
T Consensus 168 ~~~~~~~~Gf~~ 179 (205)
T 3grz_A 168 IEQALAENSFQI 179 (205)
T ss_dssp HHHHHHHTTEEE
T ss_pred HHHHHHHcCCce
Confidence 45555544 443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=6.6e-07 Score=90.33 Aligned_cols=140 Identities=15% Similarity=0.121 Sum_probs=90.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHH----HHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTML----NLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~----~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.||+|+|.++..|....+..+|++||++|.++ +.|++. +++.++++|+........
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------~~v~~~~~d~~~~~~~~~------- 122 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------NNIIPLLFDASKPWKYSG------- 122 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------SSEEEECSCTTCGGGTTT-------
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------CCeEEEEcCCCCchhhcc-------
Confidence 345689999999999999999888766999999999865 444432 357888888754210000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC---
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--- 693 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~--- 693 (772)
. ...||+|++|+.. + -....+++.+++.|+|||.|++.+..+
T Consensus 123 ----------------------~-~~~fD~V~~~~~~----------~--~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 167 (210)
T 1nt2_A 123 ----------------------I-VEKVDLIYQDIAQ----------K--NQIEILKANAEFFLKEKGEVVIMVKARSID 167 (210)
T ss_dssp ----------------------T-CCCEEEEEECCCS----------T--THHHHHHHHHHHHEEEEEEEEEEEEHHHHC
T ss_pred ----------------------c-ccceeEEEEeccC----------h--hHHHHHHHHHHHHhCCCCEEEEEEecCCcc
Confidence 0 2569999997411 1 112346899999999999999885221
Q ss_pred ---C-hhHHHHHHHHHHHhccceEEEeecC--CceEEEEEe
Q 004133 694 ---S-QATKDMVISRMKMVFNHLFCLQLEE--DVNLVLFGL 728 (772)
Q Consensus 694 ---~-~~~~~~v~~~l~~vF~~v~~~~~~~--~~N~vl~a~ 728 (772)
+ .+.....++.+++.|.-+-...... ..+.++++.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 168 STAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEEEEECTTTCTTEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhhcEEeeeecCCCCCCCcEEEEEE
Confidence 1 1222223455676676555544422 245555554
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-07 Score=94.99 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=82.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..+....+. +|++||+++.+++.|++.+ |+ .++++++.+|+.++ .
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 109 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANC--ADRVKGITGSMDNL----P-------- 109 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhC----C--------
Confidence 34569999999999999999999875 9999999999999999886 44 46799999998432 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....||+|++..--. ++--..+|+.+++.|+|||.+++...
T Consensus 110 ---------------------~~~~~fD~v~~~~~l~-----------~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 110 ---------------------FQNEELDLIWSEGAIY-----------NIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp ---------------------SCTTCEEEEEEESCSC-----------CCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEEEEEecChHh-----------hcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1136799999842111 11237899999999999999998753
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.1e-07 Score=91.16 Aligned_cols=119 Identities=12% Similarity=0.057 Sum_probs=76.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+.+||.||.| ..+.++.+. ++.+|++||.|+...+.|+++| |+...++++++++|+.+.+.-.. +.+
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~---p~~--- 100 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGH---PVS--- 100 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGC---BSS---
T ss_pred CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccc---ccc---
Confidence 35799999985 455566664 4679999999999999999999 44225789999999764311000 000
Q ss_pred cccccccccCCCCCCCCC------CCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE-Eec
Q 004133 619 VVHGNEITSNNTRSCNGN------CTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLV 691 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~------~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl~ 691 (772)
. ...+.... .......||+|++|.+.. ..++..+...|+|||++++ |+.
T Consensus 101 -------~--~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~---------------~~~~~~~l~~l~~GG~Iv~DNv~ 156 (202)
T 3cvo_A 101 -------D--AKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR---------------VGCALATAFSITRPVTLLFDDYS 156 (202)
T ss_dssp -------S--TTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH---------------HHHHHHHHHHCSSCEEEEETTGG
T ss_pred -------c--hhhhhHHHHhhhhhccccCCCCCEEEEeCCCc---------------hhHHHHHHHhcCCCeEEEEeCCc
Confidence 0 00000000 000125799999987432 3666777799999999988 554
Q ss_pred CC
Q 004133 692 SR 693 (772)
Q Consensus 692 ~~ 693 (772)
.+
T Consensus 157 ~r 158 (202)
T 3cvo_A 157 QR 158 (202)
T ss_dssp GC
T ss_pred CC
Confidence 44
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-07 Score=95.22 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=80.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|.++..+....+ +|++||+++.+++.|++.+.- +++++.+|..+. ..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~---~~------------ 100 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA---QL------------ 100 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC---CC------------
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc---Cc------------
Confidence 456899999999999999988764 799999999999999999852 799999998664 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHH-HccCCCcEEEEEecCCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK-DALSEQGLFIVNLVSRS 694 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~-~~L~~~Gilv~Nl~~~~ 694 (772)
+..||+|++-- ....+.. ...+|+.++ +.|+|||.+++......
T Consensus 101 -------------------~~~fD~v~~~~----~l~~~~~------~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 101 -------------------PRRYDNIVLTH----VLEHIDD------PVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp -------------------SSCEEEEEEES----CGGGCSS------HHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred -------------------CCcccEEEEhh----HHHhhcC------HHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 36799999721 1111111 268999999 99999999999876543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=95.53 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=87.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||++|+|.|.++..+... ..+|++||+++.+++.|++.+ ++ +++++++.+|..+...
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~------------ 154 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNL--GKNVKFFNVDFKDAEV------------ 154 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTC--CTTEEEECSCTTTSCC------------
T ss_pred CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC--CCcEEEEEcChhhccc------------
Confidence 4568999999999999988888 569999999999999999886 43 4679999998765310
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
....||+|+.|.. + | ..+++.+.+.|+|||.+++...+. ...
T Consensus 155 ---------------------~~~~~D~v~~~~~--~-------~------~~~l~~~~~~L~~gG~l~~~~~~~--~~~ 196 (248)
T 2yvl_A 155 ---------------------PEGIFHAAFVDVR--E-------P------WHYLEKVHKSLMEGAPVGFLLPTA--NQV 196 (248)
T ss_dssp ---------------------CTTCBSEEEECSS--C-------G------GGGHHHHHHHBCTTCEEEEEESSH--HHH
T ss_pred ---------------------CCCcccEEEECCc--C-------H------HHHHHHHHHHcCCCCEEEEEeCCH--HHH
Confidence 1256999998532 1 1 467999999999999999877543 333
Q ss_pred HHHHHHHHHhccce
Q 004133 699 DMVISRMKMVFNHL 712 (772)
Q Consensus 699 ~~v~~~l~~vF~~v 712 (772)
..+...+++.|..+
T Consensus 197 ~~~~~~l~~~f~~~ 210 (248)
T 2yvl_A 197 IKLLESIENYFGNL 210 (248)
T ss_dssp HHHHHHSTTTEEEE
T ss_pred HHHHHHHHhhCCcc
Confidence 44555555445443
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-07 Score=94.39 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=71.8
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+...+.+.+.. .++ +|||+|||+|.++..|++.+. +|+++|+++.|++.++++.. ..+++++++|+.+++
T Consensus 33 ~~i~~~Iv~~~~~---~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~--~~~v~vi~~D~l~~~- 104 (271)
T 3fut_A 33 EAHLRRIVEAARP---FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLS--GLPVRLVFQDALLYP- 104 (271)
T ss_dssp HHHHHHHHHHHCC---CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTT--TSSEEEEESCGGGSC-
T ss_pred HHHHHHHHHhcCC---CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC--CCCEEEEECChhhCC-
Confidence 3555666666655 567 999999999999999999974 69999999999999988874 358999999999988
Q ss_pred ccCC-CccEEEeccccc
Q 004133 131 FMDE-TFDVILDKGGLD 146 (772)
Q Consensus 131 ~~~~-sfDvVi~~~~l~ 146 (772)
+++. .+|.|+++-..+
T Consensus 105 ~~~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 105 WEEVPQGSLLVANLPYH 121 (271)
T ss_dssp GGGSCTTEEEEEEECSS
T ss_pred hhhccCccEEEecCccc
Confidence 6643 689988876544
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-07 Score=97.50 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=82.3
Q ss_pred CCCCeEEEEcccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+||.||+|.|.+...+. ...|..+|++||+++.+++.|++.+.-. ..++++++.+|+.++ .
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 183 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL----D--------- 183 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC----C---------
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC----C---------
Confidence 456789999999999988874 5668889999999999999999988422 245799999998763 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
. ...||+|++.. . ...+ +..-....+|+.+++.|+|||.|++..+.+
T Consensus 184 --------------------~-~~~fD~v~~~~--~--~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 184 --------------------T-REGYDLLTSNG--L--NIYE---PDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp --------------------C-CSCEEEEECCS--S--GGGC---CCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred --------------------c-cCCeEEEEECC--h--hhhc---CCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 1 26799999621 0 0000 000111248999999999999999887553
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-07 Score=98.43 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=92.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..+....+..+|++||++|.+++.|++.+....-+++.++.+|+.++ ..
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~-------------- 183 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL-------------- 183 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------------
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------------
Confidence 456899999999999999999887779999999999999999987332224688999999876 22
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh---hHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ---ATK 698 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~---~~~ 698 (772)
..+||+|++|.- . --.+++..+.+.|+|+|++++....... +..
T Consensus 184 -------------------~~~~D~Vi~d~p------------~--~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~ 230 (272)
T 3a27_A 184 -------------------KDVADRVIMGYV------------H--KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERP 230 (272)
T ss_dssp -------------------TTCEEEEEECCC------------S--SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHH
T ss_pred -------------------cCCceEEEECCc------------c--cHHHHHHHHHHHcCCCCEEEEEEcCccccccccH
Confidence 256999999631 1 2256899999999999999987765422 334
Q ss_pred HHHHHHHHHhcc
Q 004133 699 DMVISRMKMVFN 710 (772)
Q Consensus 699 ~~v~~~l~~vF~ 710 (772)
...++.+.+.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (272)
T 3a27_A 231 IERLKFYAEKNG 242 (272)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 455677776553
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-06 Score=84.70 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=87.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+...+||.||+|.|.++..+... ..++++||+++.+++.|++.+ ++++++.+|..++ .
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 102 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVD----Q----------- 102 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTS----C-----------
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccC----C-----------
Confidence 45679999999999999988887 359999999999999999987 3588999987653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
.....||+|++....- ..+ +++ .-..+|+.+.+.|+|||.+++............
T Consensus 103 ------------------~~~~~~D~i~~~~~~~---~~~--~~~--~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~ 157 (195)
T 3cgg_A 103 ------------------ISETDFDLIVSAGNVM---GFL--AED--GREPALANIHRALGADGRAVIGFGAGRGWVFGD 157 (195)
T ss_dssp ------------------CCCCCEEEEEECCCCG---GGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHH
T ss_pred ------------------CCCCceeEEEECCcHH---hhc--ChH--HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHH
Confidence 0135799999831100 000 001 126899999999999999999886654333445
Q ss_pred HHHHHHHh-cc
Q 004133 701 VISRMKMV-FN 710 (772)
Q Consensus 701 v~~~l~~v-F~ 710 (772)
+...+.+. |.
T Consensus 158 ~~~~l~~~Gf~ 168 (195)
T 3cgg_A 158 FLEVAERVGLE 168 (195)
T ss_dssp HHHHHHHHTEE
T ss_pred HHHHHHHcCCE
Confidence 55555554 44
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-07 Score=94.27 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=89.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.+|+|.|.++..+....+ +|++||+||.+++.|++.+....-. ++++.+|..+.+ .
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~---~----------- 181 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAAL---P----------- 181 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHG---G-----------
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcC---c-----------
Confidence 3457999999999999999888754 9999999999999999987322112 899999988753 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+.+.... .-..++..+.+.|+|||.+++.-+... ..+.
T Consensus 182 --------------------~~~fD~Vv~n~~~~-------------~~~~~l~~~~~~LkpgG~lils~~~~~--~~~~ 226 (254)
T 2nxc_A 182 --------------------FGPFDLLVANLYAE-------------LHAALAPRYREALVPGGRALLTGILKD--RAPL 226 (254)
T ss_dssp --------------------GCCEEEEEEECCHH-------------HHHHHHHHHHHHEEEEEEEEEEEEEGG--GHHH
T ss_pred --------------------CCCCCEEEECCcHH-------------HHHHHHHHHHHHcCCCCEEEEEeeccC--CHHH
Confidence 14699999853111 126899999999999999998643332 2355
Q ss_pred HHHHHHHh-ccceE
Q 004133 701 VISRMKMV-FNHLF 713 (772)
Q Consensus 701 v~~~l~~v-F~~v~ 713 (772)
+.+.+++. |.-+.
T Consensus 227 v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 227 VREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCEEEE
Confidence 66667666 65433
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-06 Score=83.55 Aligned_cols=115 Identities=9% Similarity=0.047 Sum_probs=87.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+.. +..++++||+++.+++.|++.+....-++++++.+|..+.+..
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~------------- 98 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK------------- 98 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG-------------
T ss_pred CCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC-------------
Confidence 3456899999999999998888 6779999999999999999987221125799999999874222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..||+|+++.. -.-..+++.+++. |||.+++.... ......
T Consensus 99 ---------------------~~~D~i~~~~~--------------~~~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~ 139 (183)
T 2yxd_A 99 ---------------------LEFNKAFIGGT--------------KNIEKIIEILDKK--KINHIVANTIV--LENAAK 139 (183)
T ss_dssp ---------------------CCCSEEEECSC--------------SCHHHHHHHHHHT--TCCEEEEEESC--HHHHHH
T ss_pred ---------------------CCCcEEEECCc--------------ccHHHHHHHHhhC--CCCEEEEEecc--cccHHH
Confidence 46999998432 1237889999988 99999987743 333455
Q ss_pred HHHHHHHhc
Q 004133 701 VISRMKMVF 709 (772)
Q Consensus 701 v~~~l~~vF 709 (772)
+.+.+++..
T Consensus 140 ~~~~l~~~g 148 (183)
T 2yxd_A 140 IINEFESRG 148 (183)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 677777664
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7.1e-07 Score=89.52 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=93.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|.... .+|++||+++.+++.|++.+.- .++++++.+|..++.
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~--------------- 110 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKR--WSHISWAATDILQFS--------------- 110 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTT--CSSEEEEECCTTTCC---------------
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhccc--CCCeEEEEcchhhCC---------------
Confidence 455789999999999999998875 4899999999999999999853 358999999986642
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc----HHHHHHHHHccCCCcEEEEEecCC---
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSR--- 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~--- 693 (772)
...+||+|++.- . -.++-+ ..+|+.+++.|+|||++++.....
T Consensus 111 -------------------~~~~fD~v~~~~--~---------l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 160 (216)
T 3ofk_A 111 -------------------TAELFDLIVVAE--V---------LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATC 160 (216)
T ss_dssp -------------------CSCCEEEEEEES--C---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred -------------------CCCCccEEEEcc--H---------HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcc
Confidence 136799999831 1 112222 467999999999999999865322
Q ss_pred ----ChhHHHHHHHHHHHhccceEEEee
Q 004133 694 ----SQATKDMVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 694 ----~~~~~~~v~~~l~~vF~~v~~~~~ 717 (772)
.....+.+...+.+.|..+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 188 (216)
T 3ofk_A 161 RRWGHVAGAETVITILTEALTEVERVQC 188 (216)
T ss_dssp HHTTCSCCHHHHHHHHHHHSEEEEEEEE
T ss_pred hhhhhhhhHHHHHHHHHhhccceEEEec
Confidence 112234556667777776655543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-07 Score=95.61 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=88.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhcCCC---CCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fg~~---~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.+|+|.|.++..|... .|..+|++||+++.+++.|++.+... ..++++++.+|+.+. ..
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~-------- 167 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--EL-------- 167 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CC--------
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CC--------
Confidence 34568999999999999988885 46789999999999999999987210 135799999998653 01
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
....||+|++|+.. | ..+++.+.+.|+|||.+++...+. +
T Consensus 168 -----------------------~~~~~D~v~~~~~~---------~------~~~l~~~~~~L~pgG~l~~~~~~~--~ 207 (280)
T 1i9g_A 168 -----------------------PDGSVDRAVLDMLA---------P------WEVLDAVSRLLVAGGVLMVYVATV--T 207 (280)
T ss_dssp -----------------------CTTCEEEEEEESSC---------G------GGGHHHHHHHEEEEEEEEEEESSH--H
T ss_pred -----------------------CCCceeEEEECCcC---------H------HHHHHHHHHhCCCCCEEEEEeCCH--H
Confidence 13569999996531 1 378999999999999999987543 3
Q ss_pred HHHHHHHHHHH
Q 004133 697 TKDMVISRMKM 707 (772)
Q Consensus 697 ~~~~v~~~l~~ 707 (772)
....++..+++
T Consensus 208 ~~~~~~~~l~~ 218 (280)
T 1i9g_A 208 QLSRIVEALRA 218 (280)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34456666765
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=93.72 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=79.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-----CCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-----~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
..+.+||.||+|.|.++..|....|..++++||+++.+++.|++.+.... .++++++.+|... ..
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~------ 97 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY----RD------ 97 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS----CC------
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc----cc------
Confidence 34679999999999999999998887899999999999999999874211 1379999999621 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEEe
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....+||+|++.- . -..+-+ ..+|+.+++.|+|||+++...
T Consensus 98 -----------------------~~~~~fD~V~~~~----~-------l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 98 -----------------------KRFSGYDAATVIE----V-------IEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp -----------------------GGGTTCSEEEEES----C-------GGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -----------------------cccCCCCEEEEHH----H-------HHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 0135799999721 1 112222 479999999999999877643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-07 Score=97.75 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=42.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 586 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F 586 (772)
...+||.||+|.|.++..|...++..+|++||+|+.+++.|++..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~ 90 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNI 90 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 467999999999999999999998889999999999999999886
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-07 Score=95.16 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=77.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|....+ +|++||+++.+++.|++.+.-..-++++++.+|+.++ .
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l----~----------- 98 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----P----------- 98 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----C-----------
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC----C-----------
Confidence 4567999999999999999988864 8999999999999999886211124799999997542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+..||+|+...-- ..+. -...+|..+++.|+|||.|++-
T Consensus 99 ------------------~~~~~fD~V~~~~~l----~~~~------d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 99 ------------------FTDERFHIVTCRIAA----HHFP------NPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp ------------------SCTTCEEEEEEESCG----GGCS------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------CCCCCEEEEEEhhhh----HhcC------CHHHHHHHHHHHcCCCCEEEEE
Confidence 113679999974211 1111 1268999999999999999874
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=96.82 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=77.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+...+||.||+|+|.++..|...+ .+|++||+++.|++.|+++ ++++++++|+.+. .
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~----~----------- 94 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRH------PRVTYAVAPAEDT----G----------- 94 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCC------TTEEEEECCTTCC----C-----------
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhc------CCceeehhhhhhh----c-----------
Confidence 455789999999999999998876 4899999999999988753 5799999997432 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+..||+|++ ..... .+-...+|..+++.|+|||+|++-....
T Consensus 95 ------------------~~~~sfD~v~~----~~~~h-------~~~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 95 ------------------LPPASVDVAIA----AQAMH-------WFDLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp ------------------CCSSCEEEEEE----CSCCT-------TCCHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ------------------ccCCcccEEEE----eeehh-------HhhHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 12478999998 11111 1123679999999999999998765443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-07 Score=91.75 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=82.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|... ..+|++||+++.+++.|++ .+. ++++++.+|..++ ..
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~-~~~---~~~~~~~~d~~~~---~~----------- 104 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR-HGL---DNVEFRQQDLFDW---TP----------- 104 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG-GCC---TTEEEEECCTTSC---CC-----------
T ss_pred CCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh-cCC---CCeEEEecccccC---CC-----------
Confidence 34569999999999999999888 4599999999999999999 343 6799999998654 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
..+||+|++.. . -.++-+ ..+|+.+++.|+|||.+++....+...
T Consensus 105 --------------------~~~~D~v~~~~--~---------l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 152 (218)
T 3ou2_A 105 --------------------DRQWDAVFFAH--W---------LAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHER 152 (218)
T ss_dssp --------------------SSCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-
T ss_pred --------------------CCceeEEEEec--h---------hhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCcc
Confidence 36799999832 1 112222 689999999999999999988766433
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=98.06 Aligned_cols=119 Identities=10% Similarity=0.045 Sum_probs=89.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|+|.|.++..+....+. +|++||++|.+++.|++..... -+++++++.+|+.++..
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------------- 189 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------------- 189 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------------
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------------
Confidence 3578999999999999999988765 8999999999999999887321 14579999999877632
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC----hh
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----QA 696 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~----~~ 696 (772)
..+||+|++|. | .....++..+.+.|+|||++++-..+.. ..
T Consensus 190 --------------------~~~fD~Vi~~~------------p--~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 235 (278)
T 2frn_A 190 --------------------ENIADRILMGY------------V--VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPRE 235 (278)
T ss_dssp --------------------CSCEEEEEECC------------C--SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTT
T ss_pred --------------------cCCccEEEECC------------c--hhHHHHHHHHHHHCCCCeEEEEEEeecccccccc
Confidence 25799999942 1 1226789999999999999998655432 33
Q ss_pred HHHHHHHHHHHhc
Q 004133 697 TKDMVISRMKMVF 709 (772)
Q Consensus 697 ~~~~v~~~l~~vF 709 (772)
..+.+...+.+..
T Consensus 236 ~~~~i~~~~~~~G 248 (278)
T 2frn_A 236 PFETFKRITKEYG 248 (278)
T ss_dssp THHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 4455555555543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.8e-07 Score=86.58 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=92.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+..... ++++||+++.+++.|++. .++++++.+| . ..
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~----~~------------ 71 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK-----FDSVITLSDP-K----EI------------ 71 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH-----CTTSEEESSG-G----GS------------
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-C----CC------------
Confidence 4556899999999999999988863 999999999999999998 3579999998 1 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh----
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA---- 696 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~---- 696 (772)
....||+|++..--. .+. -...+++.+++.|+|||.+++..+.....
T Consensus 72 -------------------~~~~~D~v~~~~~l~----~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 122 (170)
T 3i9f_A 72 -------------------PDNSVDFILFANSFH----DMD------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGP 122 (170)
T ss_dssp -------------------CTTCEEEEEEESCST----TCS------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS
T ss_pred -------------------CCCceEEEEEccchh----ccc------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCc
Confidence 136799999732111 111 13789999999999999999876544311
Q ss_pred ------HHHHHHHHHHHhccceEEEeecCCceEEEEEecCC
Q 004133 697 ------TKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 697 ------~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
..+.+.+.++ =|..+...... .....+++....
T Consensus 123 ~~~~~~~~~~~~~~l~-Gf~~~~~~~~~-~~~~~l~~~~~~ 161 (170)
T 3i9f_A 123 PLSIRMDEKDYMGWFS-NFVVEKRFNPT-PYHFGLVLKRKT 161 (170)
T ss_dssp CGGGCCCHHHHHHHTT-TEEEEEEECSS-TTEEEEEEEECC
T ss_pred hHhhhcCHHHHHHHHh-CcEEEEccCCC-CceEEEEEecCC
Confidence 1233344444 45444444433 345555555444
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-07 Score=96.16 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=83.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+...+ ..+|++||+++.+++.|++.+.-. ++++++.+|+.+. .
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~----~----------- 115 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTK----E----------- 115 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTC----C-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccC----C-----------
Confidence 456799999999999999998876 569999999999999999998643 7899999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|+... ....+ |+. --..+|+.+++.|+|||.+++..+..
T Consensus 116 ------------------~~~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 116 ------------------FPENNFDLIYSRD----AILAL--SLE--NKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp ------------------CCTTCEEEEEEES----CGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------------------CCCCcEEEEeHHH----HHHhc--ChH--HHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 1136799999831 10111 011 12679999999999999999876543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.49 E-value=3.7e-07 Score=94.05 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=79.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..|...+ ..++++||++|.+++.|++.+ |+ .++++++.+|+.+..
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~v~~~~~d~~~~~------------ 99 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDAAGYV------------ 99 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCCTTCC------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECChHhCC------------
Confidence 345789999999999999999887 458999999999999999886 44 458999999976531
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
. ...||+|++- ..- ..+. --..+|+.+++.|+|||.+++..
T Consensus 100 ---------------------~-~~~fD~V~~~-~~~---~~~~------~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 100 ---------------------A-NEKCDVAACV-GAT---WIAG------GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp ---------------------C-SSCEEEEEEE-SCG---GGTS------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---------------------c-CCCCCEEEEC-CCh---HhcC------CHHHHHHHHHHHcCCCeEEEEec
Confidence 0 2579999971 111 0010 12889999999999999999854
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-06 Score=86.24 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=78.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|... ..++++||+++.+++.|++.+. .+++++.+|+.++ .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~----~----------- 102 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSF----E----------- 102 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSC----C-----------
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhc----C-----------
Confidence 35679999999999999998887 4699999999999999999986 5789998887553 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.. ..||+|++.. . -..+-+ ..+|+.+++.|+|||.+++....
T Consensus 103 ------------------~~-~~fD~v~~~~--~---------l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 103 ------------------VP-TSIDTIVSTY--A---------FHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp ------------------CC-SCCSEEEEES--C---------GGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred ------------------CC-CCeEEEEECc--c---------hhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 11 5799999842 1 111222 33999999999999999988543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=94.70 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=97.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.++..+....|..+|++||+||..++.|++.. |+ +++++++.+|+.+-+..
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~i~~~~~d~l~~l~~----------- 81 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL--KEKIQVRLANGLAAFEE----------- 81 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-----------
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECchhhhccc-----------
Confidence 446899999999999999999988889999999999999999886 55 46899999999764321
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
...||+|++- ||- .-+-.++|..+...|+++|.||++-....
T Consensus 82 ----------------------~~~~D~Ivia--------G~G----g~~i~~Il~~~~~~L~~~~~lVlq~~~~~---- 123 (225)
T 3kr9_A 82 ----------------------TDQVSVITIA--------GMG----GRLIARILEEGLGKLANVERLILQPNNRE---- 123 (225)
T ss_dssp ----------------------GGCCCEEEEE--------EEC----HHHHHHHHHHTGGGCTTCCEEEEEESSCH----
T ss_pred ----------------------CcCCCEEEEc--------CCC----hHHHHHHHHHHHHHhCCCCEEEEECCCCH----
Confidence 1259999871 221 11237899999999999999999876322
Q ss_pred HHHHHHHHHh-ccceEEEeecCC--ceEEEEEecCC
Q 004133 699 DMVISRMKMV-FNHLFCLQLEED--VNLVLFGLSSE 731 (772)
Q Consensus 699 ~~v~~~l~~v-F~~v~~~~~~~~--~N~vl~a~~~~ 731 (772)
..+...|.+. |.-+-..-+.++ .=+|+.+.+.+
T Consensus 124 ~~vr~~L~~~Gf~i~~e~lv~e~~~~Yeii~~~~~~ 159 (225)
T 3kr9_A 124 DDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQ 159 (225)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESC
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence 3344444443 432222222222 23566666543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.3e-07 Score=85.91 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=89.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHH--HhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFV--REMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l--~~~~~~~~~~~~ 617 (772)
....+||.+|+|.|.++..+...+ |..++++||+++ ++++ ++++++.+|..+.- +....
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~------- 82 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLE------- 82 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHH-------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhc-------
Confidence 345699999999999999998885 667999999999 6532 57999999986641 11100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-C----CcHHHHHHHHHccCCCcEEEEEecC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-F----VEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~-f----~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
......||+|+.|..-. ..+. +... . +...+++.+.+.|+|||.+++....
T Consensus 83 --------------------~~~~~~~D~i~~~~~~~--~~~~--~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 83 --------------------RVGDSKVQVVMSDMAPN--MSGT--PAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp --------------------HHTTCCEEEEEECCCCC--CCSC--HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred --------------------cCCCCceeEEEECCCcc--ccCC--CccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 00135799999853211 0000 0000 0 0168999999999999999998765
Q ss_pred CChhHHHHHHHHHHHhccceEEEe
Q 004133 693 RSQATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 693 ~~~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
.... ..+...++..|..+....
T Consensus 139 ~~~~--~~~~~~~~~~~~~~~~~~ 160 (180)
T 1ej0_A 139 GEGF--DEYLREIRSLFTKVKVRK 160 (180)
T ss_dssp STTH--HHHHHHHHHHEEEEEEEC
T ss_pred CCcH--HHHHHHHHHhhhhEEeec
Confidence 4332 456777888887766554
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-07 Score=94.53 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=80.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..+....+ ++++||++|.+++.|++.+... .++++++.+|..++ .
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----~------------ 98 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKL----S------------ 98 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCTTSC----C------------
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc-CCCceEEECchhcC----C------------
Confidence 367999999999999999998876 8999999999999999987432 26799999997542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.....||+|++.-- - ... +.. -...+++.+++.|+|||.+++....
T Consensus 99 -----------------~~~~~~D~v~~~~~-~-~~~----~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 99 -----------------FEDKTFDYVIFIDS-I-VHF----EPL--ELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp -----------------SCTTCEEEEEEESC-G-GGC----CHH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------CCCCcEEEEEEcCc-h-HhC----CHH--HHHHHHHHHHHHcCCCcEEEEEecC
Confidence 01357999997411 0 000 000 1267999999999999999988654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.6e-07 Score=102.12 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=97.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|+|.|..+..|...++ ..+|++||+++.+++.+++.. |+ .+++++.+|+.++....
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv~~~~~D~~~~~~~~--------- 184 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNVALTHFDGRVFGAAV--------- 184 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCCSTTHHHHS---------
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCCHHHhhhhc---------
Confidence 457899999999999999999875 469999999999999999876 65 36999999998864322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCC-------------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADF-------------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~-Pp~~f-------------~~~~fl~~~~~~L~~~ 683 (772)
...||+|++|+-.+. .|+.. .|... +...+|..+.+.|+||
T Consensus 185 -----------------------~~~fD~Il~D~PcSg--~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 239 (479)
T 2frx_A 185 -----------------------PEMFDAILLDAPCSG--EGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 (479)
T ss_dssp -----------------------TTCEEEEEEECCCCC--GGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred -----------------------cccCCEEEECCCcCC--cccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 256999999984431 12211 11111 1357899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcc
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFN 710 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 710 (772)
|.||+...+-..+..+.++..+.+-++
T Consensus 240 G~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 240 GTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CEEEEecccCCcccCHHHHHHHHHHCC
Confidence 999998766655544556666554444
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.5e-07 Score=88.66 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=80.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++..|... ..++++||+++.+++.|++. .+++++.+|..++.....
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~----------- 111 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV----------- 111 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS-----------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc-----------
Confidence 34589999999999999999887 45899999999999999988 357889999877632211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+.+||+|++..--. .. --..+|+.+++.|+|||.+++.....
T Consensus 112 ------------------~~~~~fD~v~~~~~l~-----~~------~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 112 ------------------PVGKDYDLICANFALL-----HQ------DIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp ------------------CCCCCEEEEEEESCCC-----SS------CCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ------------------ccCCCccEEEECchhh-----hh------hHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 1135699999842111 11 12689999999999999999987643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-07 Score=92.07 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=81.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+...+||.||+|.|.++..+... ..+|++||+++.+++.|++.. ..++++++.+|+.++ .
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~----~----------- 111 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSL----P----------- 111 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBC----S-----------
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcC----C-----------
Confidence 35579999999999999999887 458999999999999999986 347899999997643 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|++-.. ...+. -...+|+.+++.|+|||.+++.....
T Consensus 112 ------------------~~~~~fD~v~~~~~----l~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 112 ------------------FENEQFEAIMAINS----LEWTE------EPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp ------------------SCTTCEEEEEEESC----TTSSS------CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred ------------------CCCCCccEEEEcCh----Hhhcc------CHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 11367999997311 11111 12589999999999999999987554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-07 Score=92.41 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=82.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+....+. +|++||+++.+++.|++.+.- .++++++.+|+.++ ..
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~--~~------------ 103 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKL--DF------------ 103 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSC--CS------------
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcC--CC------------
Confidence 34578999999999999988887544 899999999999999998752 46899999997653 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC---CcC-----C-CcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP---AAD-----F-VEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P---p~~-----f-~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
....||+|+...-- ..+.|. +.. . -...+|+.+.+.|+|||.+++...
T Consensus 104 -------------------~~~~fD~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 104 -------------------PSASFDVVLEKGTL----DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp -------------------CSSCEEEEEEESHH----HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred -------------------CCCcccEEEECcch----hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 13579999963210 000000 110 0 127899999999999999999876
Q ss_pred CC
Q 004133 692 SR 693 (772)
Q Consensus 692 ~~ 693 (772)
+.
T Consensus 161 ~~ 162 (215)
T 2pxx_A 161 AA 162 (215)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=101.09 Aligned_cols=175 Identities=9% Similarity=0.081 Sum_probs=112.7
Q ss_pred ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc----C---------------CCeEEEEeCCHHHHH
Q 004133 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---------------FHGITNVDFSKVVIS 105 (772)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~----g---------------~~~V~gvDiS~~~I~ 105 (772)
++|.. ..+...+.+.+.. .++.+|||+|||+|.++..+++. + ..+++|+|+++.+++
T Consensus 150 ~fyTP-~~iv~~mv~~l~p---~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~ 225 (541)
T 2ar0_A 150 QYFTP-RPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 225 (541)
T ss_dssp CCCCC-HHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred eeeCC-HHHHHHHHHHhcc---CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence 34433 4566677777764 56789999999999999877653 1 126999999999999
Q ss_pred HHHHHhccCCC-C-----cEEEEeeccCcccccCCCccEEEecccccccccCc--c-----chHHHHHHHHHHHhccccC
Q 004133 106 DMLRRNVRDRS-D-----MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPE--L-----GHKLGNQYLSEVKRLLKSG 172 (772)
Q Consensus 106 ~a~~~~~~~~~-~-----v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~--~-----~~~~~~~~l~ei~rvLkpG 172 (772)
.|+.++.-++. . ..+.++|....+....+.||+|+++..+....... . .......+++.+.+.||||
T Consensus 226 lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 305 (541)
T 2ar0_A 226 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 305 (541)
T ss_dssp HHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence 99876543332 2 78999998765413457899999987665432210 0 0011247899999999999
Q ss_pred eEEEEEEcCc--------hhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCC
Q 004133 173 GKFVCLTLAE--------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 173 G~~ii~~~~~--------~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
|++.++.... ..+++.|+.. .+...+..++...=.....+..+.+++|.+.
T Consensus 306 Gr~a~V~p~~~L~~~~~~~~iR~~L~~~---~~l~~ii~Lp~~~F~~t~v~t~Ilvl~k~~~ 364 (541)
T 2ar0_A 306 GRAAVVVPDNVLFEGGKGTDIRRDLMDK---CHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 364 (541)
T ss_dssp EEEEEEEEHHHHHCCTHHHHHHHHHHHH---EEEEEEEECCSSCSSSCSCCEEEEEEEEBCS
T ss_pred CEEEEEecCcceecCcHHHHHHHHHhhc---CCEEEEEEcCcCcccCCCCcEEEEEEECCCC
Confidence 9998875321 1123333332 2334444554311123356677888888654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-07 Score=94.41 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|.++..|.... ..+|++||+++.+++.|++.+.-....+++++.+|..++ .
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~------------ 141 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF----T------------ 141 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC----C------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc----C------------
Confidence 56899999999999998887765 459999999999999999998532234689999996543 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
.....||+|+++.-- ..+ |.+. -..+|+.+++.|+|||.+++..
T Consensus 142 -----------------~~~~~fD~v~~~~~l----~~~--~~~~--~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 142 -----------------PEPDSYDVIWIQWVI----GHL--TDQH--LAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp -----------------CCSSCEEEEEEESCG----GGS--CHHH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------CCCCCEEEEEEcchh----hhC--CHHH--HHHHHHHHHHhcCCCeEEEEEE
Confidence 113579999985210 001 1100 1479999999999999999843
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.3e-07 Score=93.80 Aligned_cols=140 Identities=19% Similarity=0.170 Sum_probs=99.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
+...+||.||+|.|.++..|....|..+|++||+||..++.|++.. |+ .++++++.+|+.+.+..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl--~~~I~~~~gD~l~~~~~---------- 87 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL--TSKIDVRLANGLSAFEE---------- 87 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG----------
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhcccc----------
Confidence 3447899999999999999999988779999999999999999886 55 56899999999875422
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
+..||+|++- ||- .-+-.++|......|+++|.||+.-...
T Consensus 88 -----------------------~~~~D~Ivia--------GmG----g~lI~~IL~~~~~~l~~~~~lIlqp~~~---- 128 (230)
T 3lec_A 88 -----------------------ADNIDTITIC--------GMG----GRLIADILNNDIDKLQHVKTLVLQPNNR---- 128 (230)
T ss_dssp -----------------------GGCCCEEEEE--------EEC----HHHHHHHHHHTGGGGTTCCEEEEEESSC----
T ss_pred -----------------------ccccCEEEEe--------CCc----hHHHHHHHHHHHHHhCcCCEEEEECCCC----
Confidence 1369999871 221 1134778999999999999999887543
Q ss_pred HHHHHHHHHHh-ccceEEEeecCC--ceEEEEEecCC
Q 004133 698 KDMVISRMKMV-FNHLFCLQLEED--VNLVLFGLSSE 731 (772)
Q Consensus 698 ~~~v~~~l~~v-F~~v~~~~~~~~--~N~vl~a~~~~ 731 (772)
.+.+...|.+. |.-+-..-+.++ .=+|+.+.+.+
T Consensus 129 ~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~~~ 165 (230)
T 3lec_A 129 EDDLRKWLAANDFEIVAEDILTENDKRYEILVVKHGH 165 (230)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEECC
T ss_pred hHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeCC
Confidence 23344444444 432222222222 34567776654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.8e-07 Score=93.23 Aligned_cols=103 Identities=15% Similarity=0.246 Sum_probs=80.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|.. +..+|++||+++.+++.|++.+ ++++++++|+.++ .
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 113 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNF----R----------- 113 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTC----C-----------
T ss_pred CCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhC----C-----------
Confidence 3557999999999999998888 6679999999999999999986 5689999987552 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
. ...||+|++.. ....+. --..+|+.+++.|+|||.+++......
T Consensus 114 ------------------~-~~~fD~v~~~~----~l~~~~------d~~~~l~~~~~~LkpgG~l~~~~~~~~ 158 (279)
T 3ccf_A 114 ------------------V-DKPLDAVFSNA----MLHWVK------EPEAAIASIHQALKSGGRFVAEFGGKG 158 (279)
T ss_dssp ------------------C-SSCEEEEEEES----CGGGCS------CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred ------------------c-CCCcCEEEEcc----hhhhCc------CHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 0 25799999732 101111 126899999999999999999876653
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=89.88 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=81.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..+.... ..+|++||+++.+++.|++.+ |+ .++++++.+|+.+. .
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 124 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGL--ANRVTFSYADAMDL----P-------- 124 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECccccC----C--------
Confidence 455799999999999999998876 469999999999999999887 43 46899999997542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
..+..||+|+.-- ....+ |. ...+|+.+++.|+|||.+++..+.
T Consensus 125 ---------------------~~~~~fD~v~~~~----~l~~~--~~----~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 125 ---------------------FEDASFDAVWALE----SLHHM--PD----RGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp ---------------------SCTTCEEEEEEES----CTTTS--SC----HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCccEEEEec----hhhhC--CC----HHHHHHHHHHHcCCCeEEEEEEee
Confidence 1136799998621 11111 11 278999999999999999976644
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.5e-07 Score=99.52 Aligned_cols=134 Identities=14% Similarity=0.112 Sum_probs=91.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CC-CeEEEEccHHHHHHhhcccCcccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DK-SLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~-rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+||.+|+|+|.++..+.... ..+|++||+++.+++.|++.+.... ++ +++++.+|+.+++.....
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~---------- 281 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---------- 281 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH----------
T ss_pred CCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH----------
Confidence 4689999999999999988753 3489999999999999999873221 23 799999999999876531
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC--cHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~--~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
.+.+||+|++|.-....+.+. ..... -.+++..+.+.|+|||++++...+.... .
T Consensus 282 -------------------~~~~fD~Ii~DPP~~~~~~~~---~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~ 338 (385)
T 2b78_A 282 -------------------HHLTYDIIIIDPPSFARNKKE---VFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-V 338 (385)
T ss_dssp -------------------TTCCEEEEEECCCCC-----C---CCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-H
T ss_pred -------------------hCCCccEEEECCCCCCCChhh---HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-H
Confidence 135799999974221000010 01111 2347788899999999999887555432 2
Q ss_pred HHHHHHHHHhcc
Q 004133 699 DMVISRMKMVFN 710 (772)
Q Consensus 699 ~~v~~~l~~vF~ 710 (772)
+...+.+++.+.
T Consensus 339 ~~~~~~i~~~~~ 350 (385)
T 2b78_A 339 SQFKKQIEKGFG 350 (385)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5.1e-06 Score=91.03 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=79.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+.+.+|..+++++|+ |.+++.|++.+.- ...++++++.+|..+ ..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~----------- 265 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE---TI----------- 265 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT---CC-----------
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC---CC-----------
Confidence 4568999999999999999999999999999999 9999999998721 125789999999752 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH---HHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG---SFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~---~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|++-- . -..+-+. .+|+.+++.|+|||.|++.-
T Consensus 266 ---------------------p~~~D~v~~~~--v---------lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 266 ---------------------PDGADVYLIKH--V---------LHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp ---------------------CSSCSEEEEES--C---------GGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred ---------------------CCCceEEEhhh--h---------hccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 12699998721 0 1112223 59999999999999998753
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=94.05 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=84.2
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~ 133 (772)
+..++.. .++.+|||+|||+|..+..++.. +...|+++|+++.+++.++++....+ .+++++++|+.++. ...
T Consensus 94 ~~~~l~~---~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~-~~~ 169 (309)
T 2b9e_A 94 PAMLLDP---PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS-PSD 169 (309)
T ss_dssp HHHHHCC---CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC-TTC
T ss_pred HHHHhCC---CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcC-ccc
Confidence 4445544 57899999999999999999885 33579999999999999988876544 47999999998876 322
Q ss_pred ---CCccEEEec------cccccccc--------Cccch---HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 134 ---ETFDVILDK------GGLDALME--------PELGH---KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 134 ---~sfDvVi~~------~~l~~l~~--------~~~~~---~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+||.|+.. +++..-.+ +++-. ....++|+.+.++|+ ||+++..|.+
T Consensus 170 ~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 170 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 579999863 22221111 01000 113467888888887 9999987765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-07 Score=95.25 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=83.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+.+||.||+|.|.++..+...+|. .+|++||++|.+++.|++.+... ..+++++++|+.++ .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~----~---------- 85 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEI----E---------- 85 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-SSEEEEEESCTTTC----C----------
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-CCceEEEEcchhhc----C----------
Confidence 45689999999999999999999884 79999999999999999987432 23899999998753 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
. ..+||+|++..--. .+. -...+|+.+++.|+|||.+++....
T Consensus 86 -------------------~-~~~fD~v~~~~~l~----~~~------~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 -------------------L-NDKYDIAICHAFLL----HMT------TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp -------------------C-SSCEEEEEEESCGG----GCS------SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -------------------c-CCCeeEEEECChhh----cCC------CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 0 25799999843111 111 1168999999999999999976543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.9e-07 Score=91.91 Aligned_cols=76 Identities=8% Similarity=0.176 Sum_probs=62.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+...+.+.+.. .++.+|||+|||+|.++..+++.|..+|+++|+++.+++.++++ ...+++++++|+.+++
T Consensus 17 ~~i~~~iv~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~~~v~~i~~D~~~~~- 89 (249)
T 3ftd_A 17 EGVLKKIAEELNI---EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GDERLEVINEDASKFP- 89 (249)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CCTTEEEECSCTTTCC-
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cCCCeEEEEcchhhCC-
Confidence 3455556666654 57889999999999999999998756899999999999988765 3458999999999988
Q ss_pred ccC
Q 004133 131 FMD 133 (772)
Q Consensus 131 ~~~ 133 (772)
+++
T Consensus 90 ~~~ 92 (249)
T 3ftd_A 90 FCS 92 (249)
T ss_dssp GGG
T ss_pred hhH
Confidence 654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-06 Score=92.56 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=93.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+||.||+|.|.++..|... |..+|++||+++.++++|++.. |+ .++++++.+|..+.+.
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l--~~~v~~~~~D~~~~~~------------- 187 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEPFK------------- 187 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGGGG-------------
T ss_pred CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcchhhcc-------------
Confidence 468999999999999999999 8899999999999999999886 44 4579999999877432
Q ss_pred ccccccccCCCCCCCCCCCCCCCce---eEEEEeCCCCCCCCCC-----CcCCcCCC----cHHHHHHHH-HccCCCcEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARV---DILIIDVDSPDSSSGM-----TCPAADFV----EGSFLLTVK-DALSEQGLF 686 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~y---D~IivD~~~~d~~~g~-----s~Pp~~f~----~~~fl~~~~-~~L~~~Gil 686 (772)
.+| |+|+.+.--......+ ..|...+. ...|++.+. +.|+|||.|
T Consensus 188 ----------------------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l 245 (284)
T 1nv8_A 188 ----------------------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIV 245 (284)
T ss_dssp ----------------------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEE
T ss_pred ----------------------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEE
Confidence 247 9999952100000001 01111111 127999999 999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEec
Q 004133 687 IVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 687 v~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~ 729 (772)
++-+.... .+. +.+.|.....++--.+...++++..
T Consensus 246 ~~e~~~~q---~~~----v~~~~~~~~~~~D~~g~~R~~~~~~ 281 (284)
T 1nv8_A 246 LMEIGEDQ---VEE----LKKIVSDTVFLKDSAGKYRFLLLNR 281 (284)
T ss_dssp EEECCTTC---HHH----HTTTSTTCEEEECTTSSEEEEEEEC
T ss_pred EEEECchH---HHH----HHHHHHhCCeecccCCCceEEEEEE
Confidence 98653222 122 3334443222232335567777654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=96.39 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=85.6
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.++..+... ..+|++||+++.+++.|++.+....-++++++.+|+.+++.....
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~------------ 275 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK------------ 275 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH------------
T ss_pred CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh------------
Confidence 368999999999999999887 458999999999999999987332223399999999999876531
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-----CcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
.+.+||+|++|.-.- +.+ +... .-.+++..+.+.|+|||++++...+..
T Consensus 276 -----------------~~~~fD~Ii~dpP~~----~~~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 276 -----------------EGERFDLVVLDPPAF----AKG--KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp -----------------TTCCEEEEEECCCCS----CCS--TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred -----------------cCCCeeEEEECCCCC----CCC--hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 135799999964211 100 1111 125688999999999999998765543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-07 Score=93.90 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=79.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-----CCCcEEEEEcCHHHHHHHHHhcCCCC-----CCCeEEEEccHHHHHHhhccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-----PFVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKSS 611 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-----p~~~i~~VEiDp~v~~vA~~~Fg~~~-----~~rl~v~i~Dg~~~l~~~~~~ 611 (772)
...+||.||+|.|.++..+.... |..+|++||+++.+++.|++.+.-.. .++++++.+|+.+.......
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~- 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK- 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH-
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc-
Confidence 45799999999999999998876 45699999999999999998873211 35799999998774311000
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 612 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
....||+|+++.... . +++.+.+.|+|||.+++.+.
T Consensus 159 ----------------------------~~~~fD~I~~~~~~~-----------~-----~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ----------------------------ELGLFDAIHVGASAS-----------E-----LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp ----------------------------HHCCEEEEEECSBBS-----------S-----CCHHHHHHEEEEEEEEEEEE
T ss_pred ----------------------------cCCCcCEEEECCchH-----------H-----HHHHHHHhcCCCcEEEEEEc
Confidence 024699999853221 1 24788999999999999986
Q ss_pred C
Q 004133 692 S 692 (772)
Q Consensus 692 ~ 692 (772)
.
T Consensus 195 ~ 195 (227)
T 2pbf_A 195 E 195 (227)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=87.40 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=88.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+...+||.||+|.|.++..|... ..+|++||+++.+++.|++.++ ++++.+|..+.-
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~------~~~~~~d~~~~~--------------- 98 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLG------RPVRTMLFHQLD--------------- 98 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHT------SCCEECCGGGCC---------------
T ss_pred CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcC------CceEEeeeccCC---------------
Confidence 34579999999999999999887 4599999999999999999983 567778865431
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh----
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA---- 696 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~---- 696 (772)
....||+|++.. ....+ |+. --..+|+.+++.|+|||.+++.+......
T Consensus 99 -------------------~~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 151 (211)
T 3e23_A 99 -------------------AIDAYDAVWAHA----CLLHV--PRD--ELADVLKLIWRALKPGGLFYASYKSGEGEGRDK 151 (211)
T ss_dssp -------------------CCSCEEEEEECS----CGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT
T ss_pred -------------------CCCcEEEEEecC----chhhc--CHH--HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc
Confidence 136799999821 10000 000 12579999999999999999987654321
Q ss_pred --------HHHHHHHHHHHh--ccceEEE
Q 004133 697 --------TKDMVISRMKMV--FNHLFCL 715 (772)
Q Consensus 697 --------~~~~v~~~l~~v--F~~v~~~ 715 (772)
..+.+.+.+++. |..+...
T Consensus 152 ~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 152 LARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp TSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred cchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 245566666665 7654443
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.1e-07 Score=95.40 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=82.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+...+ ..+|++||+++.+++.|++.+.- ...++++++.+|..++
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------------- 152 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------------- 152 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------------
T ss_pred CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC---------------
Confidence 345789999999999999888876 45999999999999999988721 1246799999997543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
...||+|++.- ....+ |+. --..+|+.+.+.|+|||.+++..+....
T Consensus 153 ---------------------~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 153 ---------------------AEPVDRIVSIE----AFEHF--GHE--NYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp ---------------------CCCCSEEEEES----CGGGT--CGG--GHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred ---------------------CCCcCEEEEeC----hHHhc--CHH--HHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 14699999731 00001 111 1278999999999999999998776543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-07 Score=96.96 Aligned_cols=110 Identities=20% Similarity=0.212 Sum_probs=82.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..|.+.+ +..+|++||+++.+++.|++.+... ..++++++++|+.++-....
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-------- 106 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGA-------- 106 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCT--------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccc--------
Confidence 356899999999999999999886 7889999999999999999987321 25789999999865311100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.......||+|++.. . -..+--..+|+.+++.|+|||.|++
T Consensus 107 -------------------~~~~~~~fD~V~~~~--~---------l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 107 -------------------DSVDKQKIDMITAVE--C---------AHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp -------------------TTTTSSCEEEEEEES--C---------GGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------ccccCCCeeEEeHhh--H---------HHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 000125799999832 1 1111337899999999999999998
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.41 E-value=6.3e-07 Score=92.48 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=79.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|... ..+|++||+++.+++.|++.+ -...++++++.+|+.++ .
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~----~----------- 99 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAI----P----------- 99 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSC----C-----------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccC----C-----------
Confidence 45679999999999998888876 368999999999999999998 22357899999997542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+..||+|++.. . ...+ + -...+|+.+++.|+|||.+++..
T Consensus 100 ------------------~~~~~fD~v~~~~--~--l~~~---~---~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 100 ------------------LPDESVHGVIVVH--L--WHLV---P---DWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp ------------------SCTTCEEEEEEES--C--GGGC---T---THHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCCeeEEEECC--c--hhhc---C---CHHHHHHHHHHHCCCCcEEEEEe
Confidence 1136799999831 1 0111 0 12789999999999999999873
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=6.7e-07 Score=91.63 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=78.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+....+ +|++||+++.+++.|++.+.-..-++++++.+|+.++ .
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~----------- 82 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----P----------- 82 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----C-----------
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC----C-----------
Confidence 4567999999999999999988764 8999999999999999886211114799999997432 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+..||+|++..-- ..+. --..+|+.+++.|+|||.+++-.
T Consensus 83 ------------------~~~~~fD~v~~~~~l----~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 83 ------------------FPDDSFDIITCRYAA----HHFS------DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp ------------------SCTTCEEEEEEESCG----GGCS------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCcEEEEEECCch----hhcc------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 113679999984211 1111 12789999999999999998743
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.5e-07 Score=93.41 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=77.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+.+.+||.||+|.|.++..|.... .+|++||+++.+++.|++.+. +++++.+|..++ .
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~----~----------- 106 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDF----S----------- 106 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTC----C-----------
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHC----C-----------
Confidence 345799999999999999988874 489999999999999999864 789999997653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC----CcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f----~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
. ...||+|++..+.- ..+ --..+|+.+++.|+|||.|++..
T Consensus 107 ------------------~-~~~fD~v~~~~~~l----------~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 107 ------------------L-GRRFSAVTCMFSSI----------GHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp ------------------C-SCCEEEEEECTTGG----------GGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred ------------------c-cCCcCEEEEcCchh----------hhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 0 36799999832110 111 12478999999999999999964
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-07 Score=100.74 Aligned_cols=101 Identities=13% Similarity=-0.001 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC---------------CC-CcEEEEeeccCccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD---------------RS-DMRWRVMDMTSMQV 130 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~---------------~~-~v~f~~~D~~~l~~ 130 (772)
++.+|||+|||+|..+..++.. +...|+++|+++.+++.++++.... +. ++++.++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 3689999999999999999987 5557999999999999998876544 33 38999999987641
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...+.||+|+... . .. ...+++.+.+.||+||++++..
T Consensus 127 ~~~~~fD~I~lDP-~---~~-------~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GS-------PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SC-------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CC-------HHHHHHHHHHhcCCCCEEEEEe
Confidence 1245799998432 1 11 2478899999999999766543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.40 E-value=6e-06 Score=86.78 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=85.1
Q ss_pred CCCeEEEEcccc---cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH--HHhhcc-cCccc
Q 004133 542 KSVKAVVIGLGA---GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKS-SSATD 615 (772)
Q Consensus 542 ~~~~vLviGlG~---G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~--l~~~~~-~~~~~ 615 (772)
...+||.||+|. |.+...+....|..+|++||+||.|++.|++.+. ..++++++.+|..+. +-.... ..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~~~~~~~~~~~~~~--- 151 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVRDPEYILNHPDVRR--- 151 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTTCHHHHHHSHHHHH---
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCCCchhhhccchhhc---
Confidence 347899999999 9888888888898999999999999999999885 357899999998753 211000 00
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
.....+||+|++-. . +..-+.. --..+|+.+++.|+|||.|++.....+
T Consensus 152 ----------------------~~d~~~~d~v~~~~--v-----lh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 152 ----------------------MIDFSRPAAIMLVG--M-----LHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp ----------------------HCCTTSCCEEEETT--T-----GGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred ----------------------cCCCCCCEEEEEec--h-----hhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 00014699998711 1 1100111 236899999999999999998887664
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.8e-07 Score=100.33 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=98.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|+|.|..+..|...+++ .+|+++|+++..++.+++.+ |+ ++++++.+|+.++....
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~--------- 326 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---KIVKPLVKDARKAPEII--------- 326 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCTTCCSSSS---------
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEEEcChhhcchhh---------
Confidence 4468999999999999999998876 79999999999999999886 55 46999999976541111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~~ 683 (772)
.+..||+|++|+-.+. .|+....++. +...+|+.+.+.|+||
T Consensus 327 ----------------------~~~~fD~Vl~D~Pcsg--~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 382 (450)
T 2yxl_A 327 ----------------------GEEVADKVLLDAPCTS--SGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG 382 (450)
T ss_dssp ----------------------CSSCEEEEEEECCCCC--GGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred ----------------------ccCCCCEEEEcCCCCC--CeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1256999999874431 2221111111 1267899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
|.+++-..+..+...+.++..+-+-++.
T Consensus 383 G~lvy~tcs~~~~ene~~v~~~l~~~~~ 410 (450)
T 2yxl_A 383 GRLLYTTCSIFKEENEKNIRWFLNVHPE 410 (450)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHCSS
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999888777766666667766555544
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.39 E-value=9e-07 Score=89.90 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=78.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|....+ ++++||+++.+++.|++.+ ++++++.+|..++ .
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 96 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDF----R----------- 96 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTC----C-----------
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHc----c-----------
Confidence 3557999999999999999988865 8999999999999999986 3589999987643 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
. ...||+|++-.+.-. .+.. +. --..+|+.+++.|+|||.+++..+..
T Consensus 97 ------------------~-~~~~D~v~~~~~~~~---~~~~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 97 ------------------L-GRKFSAVVSMFSSVG---YLKT-TE--ELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp ------------------C-SSCEEEEEECTTGGG---GCCS-HH--HHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred ------------------c-CCCCcEEEEcCchHh---hcCC-HH--HHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 0 257999995211110 0100 01 12679999999999999999976544
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=91.84 Aligned_cols=109 Identities=14% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+....+. +|++||+++.+++.|++.+.- ...++++++.+|..++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------------- 126 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------------- 126 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------------
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------------
Confidence 44579999999999999988866554 999999999999999988621 1246899999997432
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
...||+|++.- ....+ |+. --..+|+.+++.|+|||.+++..+...
T Consensus 127 ---------------------~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 127 ---------------------DEPVDRIVSIG----AFEHF--GHE--RYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp ---------------------CCCCSEEEEES----CGGGT--CTT--THHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred ---------------------CCCeeEEEEeC----chhhc--ChH--HHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 14699998731 00001 111 127899999999999999998776543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=88.96 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=80.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+.... ..++++||+++.+++.|++.+.- .+++++.+|..++- .
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~--~------------ 103 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLH--L------------ 103 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCC--C------------
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhcc--C------------
Confidence 355799999999999999888873 23899999999999999998753 47999999976531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
....||+|++.. ....+. --..+|+.+++.|+|||.+++...
T Consensus 104 -------------------~~~~fD~v~~~~----~l~~~~------~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 104 -------------------PQDSFDLAYSSL----ALHYVE------DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp -------------------CTTCEEEEEEES----CGGGCS------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------------------CCCCceEEEEec----cccccc------hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 136799999732 111111 136899999999999999998764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.3e-06 Score=94.76 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=79.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+||.+|+|+|.++..+.... ..|++||+++.+++.|++.+ |+. .+++.+|+.+++....
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~----~~~~~~D~~~~l~~~~---------- 278 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLR----VDIRHGEALPTLRGLE---------- 278 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCC----CEEEESCHHHHHHTCC----------
T ss_pred CCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCC----CcEEEccHHHHHHHhc----------
Confidence 5789999999999999988863 45999999999999999987 542 2577999999987643
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-----CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
+. ||+|++|.-.- ....... ...+++..+.+.|+|||+|++-..+.
T Consensus 279 ---------------------~~-fD~Ii~dpP~f------~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 279 ---------------------GP-FHHVLLDPPTL------VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp ---------------------CC-EEEEEECCCCC------CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ---------------------CC-CCEEEECCCcC------CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 24 99999964210 0001111 12478999999999999998655444
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-06 Score=96.03 Aligned_cols=172 Identities=10% Similarity=0.071 Sum_probs=111.6
Q ss_pred ccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--------C--------CCeEEEEeCCHHHHHHHHHH
Q 004133 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------G--------FHGITNVDFSKVVISDMLRR 110 (772)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--------g--------~~~V~gvDiS~~~I~~a~~~ 110 (772)
|-....+...+.+.+.. .+ .+|||++||+|.+...+++. + ...++|+|+++.+++.|+.+
T Consensus 227 fyTP~~Vv~lmv~ll~p---~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N 302 (544)
T 3khk_A 227 YYTPKSIVTLIVEMLEP---YK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN 302 (544)
T ss_dssp TCCCHHHHHHHHHHHCC---CS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHhc---CC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence 33446777788888864 33 49999999999998776432 1 23699999999999999877
Q ss_pred hccCCCC--cEEEEeeccCcccccCCCccEEEecccccccc--c---------------------CccchHHHHHHHHHH
Q 004133 111 NVRDRSD--MRWRVMDMTSMQVFMDETFDVILDKGGLDALM--E---------------------PELGHKLGNQYLSEV 165 (772)
Q Consensus 111 ~~~~~~~--v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~--~---------------------~~~~~~~~~~~l~ei 165 (772)
+.-++.. +.+.++|....+.+.+..||+|+++-.+..-. . +..... --.+++.+
T Consensus 303 l~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~-~~~Fl~~~ 381 (544)
T 3khk_A 303 MVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNA-NFAWMLHM 381 (544)
T ss_dssp HHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCT-HHHHHHHH
T ss_pred HHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcch-hHHHHHHH
Confidence 6444433 33378887665535568999999987665310 0 000000 12689999
Q ss_pred HhccccCeEEEEEEcCc---------hhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCC
Q 004133 166 KRLLKSGGKFVCLTLAE---------SHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 166 ~rvLkpGG~~ii~~~~~---------~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
.+.|+|||++.++.-.. ..+++.++.. ++...+..++...=.....+..+.+++|.+.
T Consensus 382 l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~---~~l~aII~LP~~lF~~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 382 LYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQ---DLVECMVALPGQLFTNTQIPACIWFLTKDKN 448 (544)
T ss_dssp HHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHT---TCEEEEEECCTTBCCSCSSCEEEEEEESCCS
T ss_pred HHHhccCceEEEEecchhhhcCcchHHHHHHHHHhC---CcHhEEEECCCCCCCCCCCCeEEEEEecCCC
Confidence 99999999988876321 1223333332 4555666665321123567888888888765
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-06 Score=95.27 Aligned_cols=116 Identities=8% Similarity=0.107 Sum_probs=85.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|+|.|.++..+... +..+|++||+++.+++.|++.+.... +++++++.+|+.+++.....
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~---------- 285 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK---------- 285 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh----------
Confidence 4578999999999999999886 44589999999999999999883321 23899999999999876431
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-----CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
...+||+|++|.-.- +. ..... .-.+++..+.+.|+|||++++...+.
T Consensus 286 -------------------~~~~fD~Vi~dpP~~----~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 286 -------------------KGEKFDIVVLDPPAF----VQ--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp -------------------TTCCEEEEEECCCCS----CS--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred -------------------hCCCCCEEEECCCCC----CC--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 135799999964211 00 01111 13568899999999999988776554
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.6e-07 Score=88.95 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=78.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..+ +..++++||+++.+++.|++.+ ++++++.+|+.++ .
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~------------ 90 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEAL----P------------ 90 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSC----C------------
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccC----C------------
Confidence 5679999999999987776 2238999999999999999987 5688888886542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
.....||+|++..- ...+. --..+|+.+++.|+|||.+++....+...
T Consensus 91 -----------------~~~~~fD~v~~~~~----l~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 138 (211)
T 2gs9_A 91 -----------------FPGESFDVVLLFTT----LEFVE------DVERVLLEARRVLRPGGALVVGVLEALSP 138 (211)
T ss_dssp -----------------SCSSCEEEEEEESC----TTTCS------CHHHHHHHHHHHEEEEEEEEEEEECTTSH
T ss_pred -----------------CCCCcEEEEEEcCh----hhhcC------CHHHHHHHHHHHcCCCCEEEEEecCCcCc
Confidence 11367999997421 11111 12689999999999999999988776544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.7e-07 Score=92.46 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=78.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCC-----CCCCeEEEEccHHHHHHhhcccCcc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGIKFVREMKSSSAT 614 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~-----~~~rl~v~i~Dg~~~l~~~~~~~~~ 614 (772)
....+||.||+|.|.++..+.+.. +..+|++||+++.+++.|++.+.-. ..++++++.+|+......
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------- 148 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------- 148 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-------
Confidence 345799999999999999888875 5569999999999999999876210 135799999998632110
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
...||+|+++... .. +++.+.+.|+|||.+++.+.+..
T Consensus 149 --------------------------~~~fD~i~~~~~~-----------~~-----~~~~~~~~LkpgG~lv~~~~~~~ 186 (226)
T 1i1n_A 149 --------------------------EAPYDAIHVGAAA-----------PV-----VPQALIDQLKPGGRLILPVGPAG 186 (226)
T ss_dssp --------------------------GCCEEEEEECSBB-----------SS-----CCHHHHHTEEEEEEEEEEESCTT
T ss_pred --------------------------CCCcCEEEECCch-----------HH-----HHHHHHHhcCCCcEEEEEEecCC
Confidence 2469999985422 12 24688899999999999886543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-06 Score=87.98 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|....+ +|++||+++.+++.|++.+. ..+++++++|..+.-.....
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~---------- 119 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQI---------- 119 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHH----------
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc---ccCceEEECccccccccccc----------
Confidence 3457899999999999999999876 89999999999999999984 35899999998775332210
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
. ....||+|+...--.. + ++. --..+|+.+++.|+|||.+++.-+..
T Consensus 120 ~------------------~~~~~d~v~~~~~~~~----~--~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 120 H------------------SEIGDANIYMRTGFHH----I--PVE--KRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp H------------------HHHCSCEEEEESSSTT----S--CGG--GHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred c------------------cccCccEEEEcchhhc----C--CHH--HHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 0 0134899998532211 1 111 12689999999999999866654443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.1e-07 Score=90.05 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=77.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+.... |..+|++||+++.+++.|++.+.-..-++++++.+|+...+..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------ 143 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP------------ 143 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG------------
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC------------
Confidence 345699999999999998888876 5579999999999999999886211114599999998432111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
...||+|+++..-. .+. +.+.+.|+|||.+++.+...
T Consensus 144 ---------------------~~~fD~v~~~~~~~-----------~~~-----~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 144 ---------------------LAPYDRIYTTAAGP-----------KIP-----EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp ---------------------GCCEEEEEESSBBS-----------SCC-----HHHHHTEEEEEEEEEEESSS
T ss_pred ---------------------CCCeeEEEECCchH-----------HHH-----HHHHHHcCCCcEEEEEECCC
Confidence 24699999843211 111 48889999999999988654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-06 Score=87.72 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=91.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHH----HHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTML----NLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~----~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
....+||.||+|.|.++..+.... |..+|++||++|.++ +.|++. .++.++++|+...- ...
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r------~nv~~i~~Da~~~~-~~~------ 141 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR------PNIFPLLADARFPQ-SYK------ 141 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC------TTEEEEECCTTCGG-GTT------
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCeEEEEcccccch-hhh------
Confidence 345789999999999999998875 567999999999774 455542 46899999986421 000
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC-
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS- 694 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~- 694 (772)
....+||+|++|+-..+ ....++..+++.|+|||.|++-+-.++
T Consensus 142 -----------------------~~~~~~D~I~~d~a~~~------------~~~il~~~~~~~LkpGG~lvisik~~~~ 186 (232)
T 3id6_C 142 -----------------------SVVENVDVLYVDIAQPD------------QTDIAIYNAKFFLKVNGDMLLVIKARSI 186 (232)
T ss_dssp -----------------------TTCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred -----------------------ccccceEEEEecCCChh------------HHHHHHHHHHHhCCCCeEEEEEEccCCc
Confidence 01257999999863211 123345566779999999998764332
Q ss_pred ------hhHHHHHHHHHHHh-ccceEEEeec--CCceEEEEEec
Q 004133 695 ------QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLS 729 (772)
Q Consensus 695 ------~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~vl~a~~ 729 (772)
.+..+.++..|++. |.-+-.+.++ +..+.+++|..
T Consensus 187 d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 187 DVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp ---CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence 12234566777664 6655444442 33566666653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.2e-07 Score=96.41 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=82.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC---CCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ---DKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~---~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+.+||.||+|.|.++..|... ..+|++||+++.+++.|++.+.-.. ..+++++.+|..++ .
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~----~--------- 146 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF----A--------- 146 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC----C---------
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC----C---------
Confidence 3459999999999999988887 3689999999999999999874311 16799999997653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc----HHHHHHHHHccCCCcEEEEEecCCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
....||+|++... ...+++ ..+|+.+++.|+|||.|++.+....
T Consensus 147 ---------------------~~~~fD~v~~~~~-----------~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 147 ---------------------LDKRFGTVVISSG-----------SINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp ---------------------CSCCEEEEEECHH-----------HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred ---------------------cCCCcCEEEECCc-----------ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 0367999986211 111222 7899999999999999999987664
Q ss_pred h
Q 004133 695 Q 695 (772)
Q Consensus 695 ~ 695 (772)
.
T Consensus 195 ~ 195 (299)
T 3g2m_A 195 A 195 (299)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9.1e-07 Score=97.41 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=83.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC---------------CCCCeEEEEccHHHHHHh
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVHITDGIKFVRE 607 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~---------------~~~rl~v~i~Dg~~~l~~ 607 (772)
..+||.+|.|.|.++..+....+..+|++||+|+..++.|++..... .-++++++.+|+.+++..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 47899999999999999998877778999999999999999876221 112399999999999876
Q ss_pred hcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 608 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
.. .+||+|++|.+.. ..+|++.+.+.|+++|++.
T Consensus 128 ~~--------------------------------~~fD~I~lDP~~~--------------~~~~l~~a~~~lk~gG~l~ 161 (378)
T 2dul_A 128 RH--------------------------------RYFHFIDLDPFGS--------------PMEFLDTALRSAKRRGILG 161 (378)
T ss_dssp ST--------------------------------TCEEEEEECCSSC--------------CHHHHHHHHHHEEEEEEEE
T ss_pred cc--------------------------------CCCCEEEeCCCCC--------------HHHHHHHHHHhcCCCCEEE
Confidence 42 4699999864311 1689999999999999988
Q ss_pred EEe
Q 004133 688 VNL 690 (772)
Q Consensus 688 ~Nl 690 (772)
+..
T Consensus 162 vt~ 164 (378)
T 2dul_A 162 VTA 164 (378)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.36 E-value=8.4e-07 Score=91.11 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|.... ..+|++||+++.+++.|++.+.- .++++++.+|..++ .
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~----~----------- 153 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETA----T----------- 153 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGC----C-----------
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc--CCceEEEEccHHHC----C-----------
Confidence 456799999999999998888775 45799999999999999999853 26799999997653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....||+|++-- ....+ |+. --..+|+.+++.|+|||.+++-..
T Consensus 154 ------------------~~~~~fD~v~~~~----~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 154 ------------------LPPNTYDLIVIQW----TAIYL--TDA--DFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp ------------------CCSSCEEEEEEES----CGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------------------CCCCCeEEEEEcc----hhhhC--CHH--HHHHHHHHHHHhcCCCeEEEEEec
Confidence 1135799999721 10001 000 126899999999999999998653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.6e-07 Score=91.73 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=79.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
+.+||.||+|.|.++..|.. +..+|++||+++.+++.|++.+.-. ...+++++.+|+.++. .
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~------------ 129 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR---P------------ 129 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC---C------------
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC---C------------
Confidence 35999999999999888865 4568999999999999999998531 2467999999986631 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
...||+|+.-..- ..+ |+. .-..+++.+++.|+|||.|++.....
T Consensus 130 -------------------~~~fD~v~~~~~l----~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 130 -------------------TELFDLIFDYVFF----CAI--EPE--MRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp -------------------SSCEEEEEEESST----TTS--CGG--GHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred -------------------CCCeeEEEEChhh----hcC--CHH--HHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 2479999972110 111 111 23689999999999999999866543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.5e-06 Score=84.73 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=95.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH-----HHhhcccCcccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF-----VREMKSSSATDE 616 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~-----l~~~~~~~~~~~ 616 (772)
...+||.||+|.|.++.++.+. ..+|++||++|.. ..++++++.+|..+. +.+.-.
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~------ 85 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALR------ 85 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHH------
T ss_pred CCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhh------
Confidence 4578999999999999999887 5699999999851 235799999997542 111100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC---CCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD---FVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~---f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....+||+|+.|.... ..|....... -+-...++.+.+.|+|||.|++-+...
T Consensus 86 ---------------------~~~~~~~D~Vlsd~~~~--~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 86 ---------------------EEGIEKVDDVVSDAMAK--VSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp ---------------------HHTCSSEEEEEECCCCC--CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ---------------------cccCCcceEEecCCCcC--CCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 00013799999986322 1121100000 012467888999999999999988754
Q ss_pred ChhHHHHHHHHHHHhccceEEEeec----CCceEEEEEecC
Q 004133 694 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLSS 730 (772)
Q Consensus 694 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~vl~a~~~ 730 (772)
.. ...++..++..|..|...+.. +.....++|.+-
T Consensus 143 ~~--~~~~~~~l~~~F~~v~~~kP~asR~~s~E~y~v~~~~ 181 (191)
T 3dou_A 143 DM--TNDFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGF 181 (191)
T ss_dssp TH--HHHHHHHHGGGEEEEEEECC------CCEEEEEEEEE
T ss_pred CC--HHHHHHHHHHhcCEEEEECCCCccCCCceEEEEEeee
Confidence 43 356788899999998887642 223445666543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=97.31 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=97.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.+|+|.|..+..+....++.+|+++|+++..++.+++.+ |+ +++++.+|+.++.....
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~----~~~~~~~D~~~~~~~~~--------- 312 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM----KATVKQGDGRYPSQWCG--------- 312 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC----CCEEEECCTTCTHHHHT---------
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC----CeEEEeCchhhchhhcc---------
Confidence 456899999999999999999988789999999999999999886 44 37899999877643322
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCCCc
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQG 684 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~~G 684 (772)
+..||+|++|+-.+. .|+....+.. +...+|+.+.+.|+|||
T Consensus 313 ----------------------~~~fD~Vl~D~Pcsg--~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG 368 (429)
T 1sqg_A 313 ----------------------EQQFDRILLDAPCSA--TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGG 368 (429)
T ss_dssp ----------------------TCCEEEEEEECCCCC--GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred ----------------------cCCCCEEEEeCCCCc--ccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 257999999874321 1221111111 12588999999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 685 LFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 685 ilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
.+++...+-.+...+.++..+-+.++.
T Consensus 369 ~lvystcs~~~~ene~~v~~~l~~~~~ 395 (429)
T 1sqg_A 369 TLVYATCSVLPEENSLQIKAFLQRTAD 395 (429)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHCTT
T ss_pred EEEEEECCCChhhHHHHHHHHHHhCCC
Confidence 999987666655555566655544443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.5e-07 Score=91.44 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=98.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
+...+||.||+|.|.++..|....|..+|++||+||..++.|++.. |+ .++++++.+|+.+.+..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~I~v~~gD~l~~~~~---------- 87 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL--TEQIDVRKGNGLAVIEK---------- 87 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG----------
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEecchhhccCc----------
Confidence 3446899999999999999999988779999999999999999886 55 56899999999875322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
+..||+|++- ||- .-+-.++|....+.|+++|.||+.=....
T Consensus 88 -----------------------~~~~D~Ivia--------gmG----g~lI~~IL~~~~~~L~~~~~lIlq~~~~~--- 129 (244)
T 3gnl_A 88 -----------------------KDAIDTIVIA--------GMG----GTLIRTILEEGAAKLAGVTKLILQPNIAA--- 129 (244)
T ss_dssp -----------------------GGCCCEEEEE--------EEC----HHHHHHHHHHTGGGGTTCCEEEEEESSCH---
T ss_pred -----------------------cccccEEEEe--------CCc----hHHHHHHHHHHHHHhCCCCEEEEEcCCCh---
Confidence 1359999871 221 11337789999999999999998765432
Q ss_pred HHHHHHHHHHh-ccceEEEeecC--CceEEEEEecC
Q 004133 698 KDMVISRMKMV-FNHLFCLQLEE--DVNLVLFGLSS 730 (772)
Q Consensus 698 ~~~v~~~l~~v-F~~v~~~~~~~--~~N~vl~a~~~ 730 (772)
..+...|.+. |.-+-..-+.+ -.=+|+.+.+.
T Consensus 130 -~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 130 -WQLREWSEQNNWLITSEAILREDNKVYEIMVLAPS 164 (244)
T ss_dssp -HHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred -HHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEeC
Confidence 3344455544 54222222222 23456666655
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=87.87 Aligned_cols=108 Identities=10% Similarity=0.158 Sum_probs=81.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-----CCCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-----~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
+...+||.||+|.|.++..+... ..+|++||+++.+++.|++.+.-. ...+++++.+|+.++ .
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~----~------ 96 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL----S------ 96 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC----C------
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc----C------
Confidence 35679999999999999999887 469999999999999999987432 134689999987542 1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc-H---HHHHHHHHccCCCcEEEEEec
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-G---SFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~-~---~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....||+|++.. . -..+-+ . .+|+.+++.|+|||.+++...
T Consensus 97 -----------------------~~~~~~D~v~~~~--~---------l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 97 -----------------------FHDSSFDFAVMQA--F---------LTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp -----------------------SCTTCEEEEEEES--C---------GGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----------------------CCCCceeEEEEcc--h---------hhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 1136799999831 1 111112 2 799999999999999998766
Q ss_pred CCC
Q 004133 692 SRS 694 (772)
Q Consensus 692 ~~~ 694 (772)
.+.
T Consensus 143 ~~~ 145 (235)
T 3sm3_A 143 GQN 145 (235)
T ss_dssp BCC
T ss_pred Ccc
Confidence 553
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-06 Score=94.38 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=86.6
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC--CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ--DKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~--~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+||.+|+|.|.++..+.... ..+|++||+++.+++.|++.+.... +++++++.+|+.+++.....
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~---------- 289 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh----------
Confidence 4689999999999999888863 4589999999999999999884322 23799999999999876431
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC-CCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS-SGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~-~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
.+.+||+|++|.-....+ ..+ ....-.-.+++..+.+.|+|+|++++...+..
T Consensus 290 -------------------~~~~fD~Ii~dpP~~~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 290 -------------------RGEKFDVIVMDPPKFVENKSQL--MGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp -------------------TTCCEEEEEECCSSTTTCSSSS--SCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred -------------------cCCCCCEEEECCCCCCCChhHH--HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 125799999975221000 000 00001135789999999999999998665543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=94.58 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+..+||.||+|.|.++.++.+. +..+|++||+++ +++.|++.+ |+ .++++++.+|+.++ .
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~----~-------- 126 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKL--EDTITLIKGKIEEV----H-------- 126 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTS----C--------
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCC--CCcEEEEEeeHHHh----c--------
Confidence 45679999999999999999987 445999999997 899999876 43 46899999998654 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
....+||+|+.+.-.. .+ ...-.-..+|..+.+.|+|||+++
T Consensus 127 ---------------------~~~~~~D~Ivs~~~~~----~l---~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 ---------------------LPVEKVDVIISEWMGY----FL---LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp ---------------------CSCSCEEEEEECCCBT----TB---TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCCCcEEEEEEcCchh----hc---cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 1136799999853100 00 001112568999999999999998
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=86.08 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=76.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|.++..+... ..++++||+++.+++.|++.+.-..-++++++.+|..++ .
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~------------ 93 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNL----T------------ 93 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGC----C------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhC----C------------
Confidence 4569999999999999999887 459999999999999999886321124699999997653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
. ...||+|+...--. .+ ++. --..+++.+++.|+|||.+++-
T Consensus 94 -----------------~-~~~~D~v~~~~~l~----~~--~~~--~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 94 -----------------F-DRQYDFILSTVVLM----FL--EAK--TIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp -----------------C-CCCEEEEEEESCGG----GS--CGG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------C-CCCceEEEEcchhh----hC--CHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence 1 25799999742100 01 111 1277999999999999997653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.1e-06 Score=91.19 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=79.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.||+|.|.++..+.+.+|..+++++|+ |.+++.|++++.- ...++++++.+|..+ ..
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~------------ 232 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD---PL------------ 232 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS---CC------------
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC---CC------------
Confidence 457999999999999999999999999999999 9999999988721 124789999999752 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...||+|++- .. --.+-+ ..+|+.+++.|+|||.+++.-.
T Consensus 233 --------------------p~~~D~v~~~----~v-------lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 233 --------------------PAGAGGYVLS----AV-------LHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp --------------------CCSCSEEEEE----SC-------GGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred --------------------CCCCcEEEEe----hh-------hccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 1269999971 10 111222 5799999999999999987543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.33 E-value=8.2e-07 Score=97.93 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=83.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc--------CCCCCCCeEEEEccHHHHHHhhccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF--------GFTQDKSLKVHITDGIKFVREMKSS 611 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F--------g~~~~~rl~v~i~Dg~~~l~~~~~~ 611 (772)
....+||.||+|.|.++..|...+ |..+|++||+++.+++.|++.+ |....++++++.+|..+......
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-- 159 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-- 159 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS--
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc--
Confidence 356799999999999999888876 6789999999999999999886 41234689999999865421100
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 612 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.......||+|+...--. .+ + . -..+|+.+++.|+|||.|++..+
T Consensus 160 -------------------------~~~~~~~fD~V~~~~~l~----~~---~-d--~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 160 -------------------------EGVPDSSVDIVISNCVCN----LS---T-N--KLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp -------------------------CCCCTTCEEEEEEESCGG----GC---S-C--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------------------------CCCCCCCEEEEEEccchh----cC---C-C--HHHHHHHHHHHcCCCCEEEEEEe
Confidence 001246799999843111 11 1 1 27899999999999999998643
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.1e-07 Score=91.56 Aligned_cols=107 Identities=19% Similarity=0.190 Sum_probs=76.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.||+|+|.++.+|...+ |..+|++||++|.+++.+.+.... .++++++.+|+.+...- .
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--~~~v~~~~~d~~~~~~~-~----------- 142 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--RTNIIPVIEDARHPHKY-R----------- 142 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--CTTEEEECSCTTCGGGG-G-----------
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--cCCeEEEEcccCChhhh-c-----------
Confidence 45689999999999999999886 667999999998765544433321 15799999998764211 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.....||+|++|....+ ....++..+.+.|+|||++++.+..
T Consensus 143 ------------------~~~~~~D~V~~~~~~~~------------~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 143 ------------------MLIAMVDVIFADVAQPD------------QTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp ------------------GGCCCEEEEEECCCCTT------------HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ------------------ccCCcEEEEEEcCCCcc------------HHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 01257999999653111 1245688899999999999986543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.5e-06 Score=83.41 Aligned_cols=164 Identities=13% Similarity=0.078 Sum_probs=92.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC--CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP--FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p--~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
...+||.||+|.|.++..|...+| ..+|++||++|.. ..++++++.+|..+.....-... ..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~-----~~ 85 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNI-----NY 85 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccc-----cc
Confidence 346899999999999999999987 5799999999931 13568999998765310000000 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC----CcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f----~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
+...... ........ ......||+|+.|..... .|...+ ... ....+++.+.+.|+|||.|++.++....
T Consensus 86 i~~~~~~-~~~~~~~~--~~~~~~fD~v~~~~~~~~--~g~~~~-d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 159 (201)
T 2plw_A 86 IDNMNNN-SVDYKLKE--ILQDKKIDIILSDAAVPC--IGNKID-DHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQ 159 (201)
T ss_dssp ------C-HHHHHHHH--HHTTCCEEEEEECCCCCC--CSCHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTT
T ss_pred cccccch-hhHHHHHh--hcCCCcccEEEeCCCcCC--CCCccc-CHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCC
Confidence 0000000 00000000 001357999999652110 111000 000 0124788999999999999998765432
Q ss_pred hHHHHHHHHHHHhccceEEEeec----CCceEEEEEec
Q 004133 696 ATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 729 (772)
Q Consensus 696 ~~~~~v~~~l~~vF~~v~~~~~~----~~~N~vl~a~~ 729 (772)
...+...++..|..+..++.. ......++|.+
T Consensus 160 --~~~l~~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 160 --TNNLKTYLKGMFQLVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp --HHHHHHHHHTTEEEEEECCCC-----CCEEEEEEEE
T ss_pred --HHHHHHHHHHHHheEEEECCcccCCcCceEEEEEec
Confidence 345677788888877666532 22334555543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=92.95 Aligned_cols=106 Identities=16% Similarity=0.236 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..|...++ .+|++||+++.+++.|++.+ |+ .++++++.+|..+. .
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----~-------- 145 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFG-VSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEI----P-------- 145 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEEcCcccC----C--------
Confidence 4567999999999999998888753 59999999999999999876 54 46899999997542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
..+..||+|++-- ....+ | . -..+|+.+++.|+|||.|++..+.
T Consensus 146 ---------------------~~~~~fD~v~~~~----~l~~~--~--~--~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 146 ---------------------CEDNSYDFIWSQD----AFLHS--P--D--KLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp ---------------------SCTTCEEEEEEES----CGGGC--S--C--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEeEEEecc----hhhhc--C--C--HHHHHHHHHHHcCCCeEEEEEEec
Confidence 1136799999731 10111 1 1 378999999999999999987543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-06 Score=82.24 Aligned_cols=136 Identities=11% Similarity=0.136 Sum_probs=88.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|+|.++..|.... +|++||+++.+++. .++++++.+|+.+.+.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~--------------- 75 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---------HRGGNLVRADLLCSIN--------------- 75 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---------CSSSCEEECSTTTTBC---------------
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---------ccCCeEEECChhhhcc---------------
Confidence 45699999999999999998876 89999999999988 3578999999866311
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC---cCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp---~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
..+||+|+.+.--. ....+. ..--..++++.+.+.| |||.+++-..... ..
T Consensus 76 -------------------~~~fD~i~~n~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--~~ 129 (170)
T 3q87_B 76 -------------------QESVDVVVFNPPYV----PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--RP 129 (170)
T ss_dssp -------------------GGGCSEEEECCCCB----TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--CH
T ss_pred -------------------cCCCCEEEECCCCc----cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--CH
Confidence 25799999842110 000000 0011256888888888 9999998664332 22
Q ss_pred HHHHHHHHHh-ccceEEEeecCCceEEEEEecC
Q 004133 699 DMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSS 730 (772)
Q Consensus 699 ~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~~ 730 (772)
+.+.+.+++. |..+...........++.....
T Consensus 130 ~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~~~ 162 (170)
T 3q87_B 130 KEVLARLEERGYGTRILKVRKILGETVYIIKGE 162 (170)
T ss_dssp HHHHHHHHHTTCEEEEEEEEECSSSEEEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEeeccCCceEEEEEEe
Confidence 3445555554 6554444444444444444433
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=96.24 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=76.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
+.+.||.||+|+|.|++++++... .+|.+||.++ +++.|++.. |+ .++++++.+|..++ .
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~~--~~~i~~i~~~~~~~----~--------- 145 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNGL--EDRVHVLPGPVETV----E--------- 145 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTTC--TTTEEEEESCTTTC----C---------
T ss_pred CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcCC--CceEEEEeeeeeee----c---------
Confidence 346899999999999999988743 4899999997 788898775 54 57899999987554 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
-..++|+|+......- ...+-.-..++....+.|+|||+++
T Consensus 146 ---------------------lpe~~DvivsE~~~~~-------l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 146 ---------------------LPEQVDAIVSEWMGYG-------LLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp ---------------------CSSCEEEEECCCCBTT-------BTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------CCccccEEEeeccccc-------ccccchhhhHHHHHHhhCCCCceEC
Confidence 1367999998553221 1122234778888889999999988
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=92.93 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=61.8
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCC---eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH---GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~---~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~ 127 (772)
..+...+...+.. .++.+|||+|||+|.++..|++.+.. +|+++|+++.|++.++++. ..+++++++|+.+
T Consensus 28 ~~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 28 HGVIDAIVAAIRP---ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---GELLELHAGDALT 101 (279)
T ss_dssp HHHHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---GGGEEEEESCGGG
T ss_pred HHHHHHHHHhcCC---CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---CCCcEEEECChhc
Confidence 3455556666654 57889999999999999999988542 2999999999999998873 4579999999999
Q ss_pred cccccC
Q 004133 128 MQVFMD 133 (772)
Q Consensus 128 l~~~~~ 133 (772)
++ +++
T Consensus 102 ~~-~~~ 106 (279)
T 3uzu_A 102 FD-FGS 106 (279)
T ss_dssp CC-GGG
T ss_pred CC-hhH
Confidence 87 543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=9.2e-07 Score=94.34 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=70.5
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
+.+...+..++.. .++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++....+.+++|+++|+.+++
T Consensus 12 pvLl~e~l~~L~~---~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 12 PVMVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 88 (301)
T ss_dssp CTTHHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHH
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 3455556667754 578899999999999999999873 357999999999999999887654468999999998875
Q ss_pred c-cc---CCCccEEEecc
Q 004133 130 V-FM---DETFDVILDKG 143 (772)
Q Consensus 130 ~-~~---~~sfDvVi~~~ 143 (772)
. +. .++||.|+...
T Consensus 89 ~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 89 FLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHHHTTCSCEEEEEEEC
T ss_pred HHHHhcCCCCCCEEEEcC
Confidence 1 11 15799888643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=91.57 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=82.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CC-CCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GF-TQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+.+||.||+|.|.++..|.... .+|++||+++.+++.|++.. +. ....++.++.+|..++-...-
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------- 126 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP------- 126 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-------
T ss_pred cCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc-------
Confidence 345799999999999999988873 49999999999999998764 11 122578899999887643321
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc-CCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA-DFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~-~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
....||+|++-.+.- ..+..+.. .=.-..+|+.+.+.|+|||+|++....
T Consensus 127 -----------------------~~~~fD~V~~~g~~l---~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 127 -----------------------AGDGFDAVICLGNSF---AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp -----------------------CTTCEEEEEECTTCG---GGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -----------------------cCCCeEEEEEcChHH---hhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 136799999821110 01100000 001377999999999999999988754
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=95.22 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=78.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.++.++.+. +..+|++||+++ +++.|++.. |+ .++++++.+|..++ ..
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~--~~~v~~~~~d~~~~--~~---------- 129 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKL--DHVVTIIKGKVEEV--EL---------- 129 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTC--CC----------
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCC--CCcEEEEECcHHHc--cC----------
Confidence 4578999999999999999988 566999999995 999999876 44 46799999998665 11
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
...+||+|+.+.-... + ...-.-..++..+.+.|+|||+++.+
T Consensus 130 ---------------------~~~~fD~Iis~~~~~~----l---~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 130 ---------------------PVEKVDIIISEWMGYC----L---FYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp ---------------------SSSCEEEEEECCCBBT----B---TBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ---------------------CCCceEEEEEcccccc----c---cCchhHHHHHHHHHHhCCCCCEEccc
Confidence 1367999998531110 0 11112367899999999999999743
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.31 E-value=8e-07 Score=90.30 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=77.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC------CCcEEEEEcCHHHHHHHHHhcCCCC-----CCCeEEEEccHHHHHHhhcc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP------FVGIEAVELDLTMLNLAEDYFGFTQ-----DKSLKVHITDGIKFVREMKS 610 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p------~~~i~~VEiDp~v~~vA~~~Fg~~~-----~~rl~v~i~Dg~~~l~~~~~ 610 (772)
...+||.||+|.|.++..|.+..+ ..+|++||+++.+++.|++.+.-.. .++++++.+|+.+.+..
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--- 160 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP--- 160 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG---
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc---
Confidence 346899999999999998888654 2589999999999999998863111 25799999998752111
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 611 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|+++.... . +++.+.+.|+|||.+++.+
T Consensus 161 ------------------------------~~~fD~I~~~~~~~-----------~-----~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 161 ------------------------------NAPYNAIHVGAAAP-----------D-----TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp ------------------------------GCSEEEEEECSCBS-----------S-----CCHHHHHTEEEEEEEEEEE
T ss_pred ------------------------------CCCccEEEECCchH-----------H-----HHHHHHHHhcCCCEEEEEE
Confidence 14699999854221 1 2278899999999999998
Q ss_pred cC
Q 004133 691 VS 692 (772)
Q Consensus 691 ~~ 692 (772)
..
T Consensus 195 ~~ 196 (227)
T 1r18_A 195 GP 196 (227)
T ss_dssp SC
T ss_pred ec
Confidence 65
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=9.8e-07 Score=94.72 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=78.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+.+..+ ..+|++||+++.+++.|++.+....-++++++.+|+.+.+..
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~------------ 141 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE------------ 141 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG------------
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc------------
Confidence 3457999999999999999988876 367999999999999999987211113599999998764221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...||+|+++.--. ++. +.+.+.|+|||++++.+.+
T Consensus 142 ---------------------~~~fD~Iv~~~~~~-----------~~~-----~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 142 ---------------------FSPYDVIFVTVGVD-----------EVP-----ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ---------------------GCCEEEEEECSBBS-----------CCC-----HHHHHHEEEEEEEEEEBCB
T ss_pred ---------------------CCCeEEEEEcCCHH-----------HHH-----HHHHHhcCCCcEEEEEECC
Confidence 24699999953211 111 5778899999999998754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=92.95 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=81.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..|...+ ..+|++||+++.+++.|++.+ |+ .++++++.+|+.+. .
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 180 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI--DDHVRSRVCNMLDT----P-------- 180 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSC----C--------
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECChhcC----C--------
Confidence 456799999999999999998875 469999999999999999886 44 46899999998542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|+.-- . + ..+--..+|+.+.+.|+|||.+++-.+..
T Consensus 181 ---------------------~~~~~fD~V~~~~--~-----l----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 181 ---------------------FDKGAVTASWNNE--S-----T----MYVDLHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp ---------------------CCTTCEEEEEEES--C-----G----GGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEeEEEECC--c-----h----hhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence 1136799999721 1 1 01115889999999999999999766443
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=92.62 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=76.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.+++++.+. +..+|++||+++ +++.|++.+ |+ .++++++.+|+.++ .
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~----~--------- 100 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGF--SDKITLLRGKLEDV----H--------- 100 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTS----C---------
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHH-HHHHHHHHHHHcCC--CCCEEEEECchhhc----c---------
Confidence 4578999999999999999987 455999999995 899999886 44 46899999997654 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
....+||+|+.+.-.. .+ ...-.-..++..+++.|+|||+++
T Consensus 101 --------------------~~~~~~D~Ivs~~~~~----~l---~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 101 --------------------LPFPKVDIIISEWMGY----FL---LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp --------------------CSSSCEEEEEECCCBT----TB---STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CCCCcccEEEEeCchh----hc---ccHHHHHHHHHHHHhhcCCCeEEE
Confidence 0135799999853211 00 011122578999999999999998
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=95.32 Aligned_cols=103 Identities=21% Similarity=0.174 Sum_probs=76.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.++.++.+. +..+|++||+++ +++.|++.+ |+ .++++++.+|..++ .
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l--~~~v~~~~~d~~~~----~--------- 112 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEV----S--------- 112 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTC----C---------
T ss_pred CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCC--CCcEEEEEcchhhC----C---------
Confidence 4579999999999999999886 556999999997 789998876 44 46899999997653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...+||+|+...-.. .+ ... .-.+++..+++.|+|||+++++.
T Consensus 113 ---------------------~~~~~D~Ivs~~~~~----~~--~~~--~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 113 ---------------------LPEQVDIIISEPMGY----ML--FNE--RMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp ---------------------CSSCEEEEEECCCBT----TB--TTT--SHHHHHHHGGGGEEEEEEEESCE
T ss_pred ---------------------CCCceeEEEEeCchh----cC--ChH--HHHHHHHHHHhhcCCCeEEEEec
Confidence 024699999842110 00 011 12567788899999999998653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-05 Score=92.97 Aligned_cols=179 Identities=12% Similarity=0.033 Sum_probs=116.3
Q ss_pred ccccccchhhHHHHHHHhhcCCC-CCCCCeEEEEcCCCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHhccCCC-
Q 004133 43 SFEWYAEWPQLRDPLISLIGAPT-SSPPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRS- 116 (772)
Q Consensus 43 ~~eW~~~~~~l~~~l~~~l~~~~-~~~~~~ILDlGCG~G~ls~~La~~----g~~~V~gvDiS~~~I~~a~~~~~~~~~- 116 (772)
.-++|.. ..+...+.+++.... ..++.+|||++||+|.+...+++. +...++|+|+++.++..|+.+..-++.
T Consensus 196 ~G~fyTP-~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 274 (542)
T 3lkd_A 196 AGEFYTP-QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP 274 (542)
T ss_dssp CSSCCCC-HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CCeeccc-HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence 3444444 567777777775211 146789999999999999887765 245799999999999999776544433
Q ss_pred --CcEEEEeeccCc--ccccCCCccEEEecccccccccCc-----c------c---h-H-HHHHHHHHHHhccc-cCeEE
Q 004133 117 --DMRWRVMDMTSM--QVFMDETFDVILDKGGLDALMEPE-----L------G---H-K-LGNQYLSEVKRLLK-SGGKF 175 (772)
Q Consensus 117 --~v~f~~~D~~~l--~~~~~~sfDvVi~~~~l~~l~~~~-----~------~---~-~-~~~~~l~ei~rvLk-pGG~~ 175 (772)
++.+.++|.... +......||+|+++-.+..-.... + + + . .--.+++.+.+.|+ +||++
T Consensus 275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~ 354 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVM 354 (542)
T ss_dssp GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEE
T ss_pred cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeE
Confidence 578999998876 324567899999886654211000 0 0 0 0 01258999999999 99999
Q ss_pred EEEEcCch--------hhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecC
Q 004133 176 VCLTLAES--------HVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKEN 225 (772)
Q Consensus 176 ii~~~~~~--------~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~ 225 (772)
.++....- .+++.++.. .+...+..++..-=.....+..+.+++|.+
T Consensus 355 a~VlP~g~Lf~~~~~~~iRk~Lle~---~~l~~II~LP~~lF~~t~i~t~Ilvl~K~k 409 (542)
T 3lkd_A 355 AIVLPHGVLFRGNAEGTIRKALLEE---GAIDTVIGLPANIFFNTSIPTTVIILKKNR 409 (542)
T ss_dssp EEEEETHHHHCCTHHHHHHHHHHHT---TCEEEEEECCSSCSSSCCCCEEEEEECSSC
T ss_pred EEEecchHhhCCchhHHHHHHHHhC---CceeEEEEccccccCCCCCcEEEEEEecCC
Confidence 88764321 122233332 455566666532112456778888888865
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=9.2e-07 Score=97.61 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-C--cEEEEeeccCccc-ccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-D--MRWRVMDMTSMQV-FMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~--v~f~~~D~~~l~~-~~~~sfDvVi~ 141 (772)
++.+|||++||+|.++..++.. |...|+++|+++.+++.++++....+. + ++++++|+.++.. ...+.||+|+.
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4689999999999999999885 546799999999999999888765553 3 8999999987531 11467999987
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.. . .. ...+++.+.+.|++||++++..
T Consensus 132 DP-~---g~-------~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP-F---GT-------PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC-S---SC-------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-C---cC-------HHHHHHHHHHHhCCCCEEEEEe
Confidence 54 1 11 1468889999999999766554
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-06 Score=93.49 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=94.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.||+|.|.++..+....|..+|++||+++.+++.|++.+.. .+...+++.+|..++.
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~-~~~~~~~~~~d~~~~~----------------- 258 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA-NGVEGEVFASNVFSEV----------------- 258 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH-TTCCCEEEECSTTTTC-----------------
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCEEEEccccccc-----------------
Confidence 4689999999999999999998888999999999999999998732 1223677888876531
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHH
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 702 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 702 (772)
..+||+|+++. .-. .|+. ...-....+++.+++.|+|||.+++-.. +.... -
T Consensus 259 ------------------~~~fD~Iv~~~--~~~-~g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~-~~~~~----~ 310 (343)
T 2pjd_A 259 ------------------KGRFDMIISNP--PFH-DGMQ--TSLDAAQTLIRGAVRHLNSGGELRIVAN-AFLPY----P 310 (343)
T ss_dssp ------------------CSCEEEEEECC--CCC-SSSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEE-TTSSH----H
T ss_pred ------------------cCCeeEEEECC--Ccc-cCcc--CCHHHHHHHHHHHHHhCCCCcEEEEEEc-CCCCc----H
Confidence 25799999832 100 0100 0000136899999999999999987442 22221 2
Q ss_pred HHHHHhccceEEEeecCCceEEEEEec
Q 004133 703 SRMKMVFNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 703 ~~l~~vF~~v~~~~~~~~~N~vl~a~~ 729 (772)
..+.+.|..+..+. .+..-.|+-+.+
T Consensus 311 ~~l~~~f~~~~~~~-~~~gf~v~~~~k 336 (343)
T 2pjd_A 311 DVLDETFGFHEVIA-QTGRFKVYRAIM 336 (343)
T ss_dssp HHHHHHHSCCEEEE-ECSSEEEEEEEC
T ss_pred HHHHHhcCceEEEe-eCCCEEEEEEEe
Confidence 34566777665544 333445555544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-06 Score=94.39 Aligned_cols=142 Identities=18% Similarity=0.141 Sum_probs=96.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..+... ..+|++||+|+.+++.|++.+... .-.++++.+|+.++...
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~-~~~v~~~~~D~~~~~~~-------------- 295 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEAN-ALKAQALHSDVDEALTE-------------- 295 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHT-TCCCEEEECSTTTTSCT--------------
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc-CCCeEEEEcchhhcccc--------------
Confidence 4569999999999999988887 359999999999999999987421 12389999998765211
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
..+||+|+++.--. .+.. ...-....+++.+++.|+|||.+++-.. +... .
T Consensus 296 -------------------~~~fD~Ii~npp~~---~~~~--~~~~~~~~~l~~~~~~LkpGG~l~iv~n-~~l~----~ 346 (381)
T 3dmg_A 296 -------------------EARFDIIVTNPPFH---VGGA--VILDVAQAFVNVAAARLRPGGVFFLVSN-PFLK----Y 346 (381)
T ss_dssp -------------------TCCEEEEEECCCCC---TTCS--SCCHHHHHHHHHHHHHEEEEEEEEEEEC-TTSC----H
T ss_pred -------------------CCCeEEEEECCchh---hccc--ccHHHHHHHHHHHHHhcCcCcEEEEEEc-CCCC----h
Confidence 25799999842111 0000 0011236899999999999999998653 3222 2
Q ss_pred HHHHHHhccceEEEeecCCceEEEEEecCC
Q 004133 702 ISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 702 ~~~l~~vF~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
-..+.+.|..+..+ .+..=.|+-+.+.+
T Consensus 347 ~~~l~~~f~~v~~l--~~~gF~Vl~a~~~~ 374 (381)
T 3dmg_A 347 EPLLEEKFGAFQTL--KVAEYKVLFAEKRG 374 (381)
T ss_dssp HHHHHHHHSCCEEE--EESSSEEEEEECC-
T ss_pred HHHHHHhhccEEEE--eCCCEEEEEEEEec
Confidence 34566778887776 33333455554443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-06 Score=89.78 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=77.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+....+ .+|++||+++.+++.|++.+....-++++++.+|+.. ...
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~----------- 154 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK---GFP----------- 154 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG---CCG-----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc---CCC-----------
Confidence 3456899999999999999998877 7999999999999999998621111359999999821 111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
....||+|+++..- ..+ ...+.+.|+|||.+++.+....
T Consensus 155 -------------------~~~~fD~Ii~~~~~-----------~~~-----~~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 155 -------------------PKAPYDVIIVTAGA-----------PKI-----PEPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp -------------------GGCCEEEEEECSBB-----------SSC-----CHHHHHTEEEEEEEEEEECSSS
T ss_pred -------------------CCCCccEEEECCcH-----------HHH-----HHHHHHhcCCCcEEEEEEecCC
Confidence 02359999985321 112 1367889999999999886543
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=6e-07 Score=93.28 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||||||+|.++..++.. +...++++|++..+....+. ....+.++.+...++.... ++.+.||+|++..+.
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~~ii~~~~~~dv~~-l~~~~~DlVlsD~ap 150 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGWNIITFKDKTDIHR-LEPVKCDTLLCDIGE 150 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTGGGEEEECSCCTTT-SCCCCCSEEEECCCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCCCeEEEeccceehh-cCCCCccEEEecCcc
Confidence 57889999999999999988876 55678999998532100000 0001125566666665555 778899999997766
Q ss_pred cccccCccchHHHHHHHHHHHhccccC-eEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpG-G~~ii~~~~ 181 (772)
+ .-....+......+|+.+.++|+|| |.|++-.|.
T Consensus 151 n-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 151 S-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred C-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 5 1111101111224589999999999 999998877
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.1e-07 Score=90.50 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=78.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..+... .++++||+++.+++.|++.+.- ...+++++.+|..++ .
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~------------ 92 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAME-TNRHVDFWVQDMREL----E------------ 92 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHH-TTCCCEEEECCGGGC----C------------
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhh-cCCceEEEEcChhhc----C------------
Confidence 3479999999999998888776 5899999999999999998742 125789999997653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
. ...||+|++..+.-.. + +..---..+|+.+++.|+|||.+++.+..
T Consensus 93 -----------------~-~~~fD~v~~~~~~~~~---~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 93 -----------------L-PEPVDAITILCDSLNY---L---QTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp -----------------C-SSCEEEEEECTTGGGG---C---CSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----------------C-CCCcCEEEEeCCchhh---c---CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 0 2569999984211100 0 00001257899999999999999998754
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-06 Score=89.85 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=76.3
Q ss_pred CCCeEEEEcccccHHHH----HHHHhCCCCcE--EEEEcCHHHHHHHHHhcCCC---CCCCeEEEEccHHHHHHhhcccC
Q 004133 542 KSVKAVVIGLGAGLLPM----FLHECMPFVGI--EAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSS 612 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~----~L~~~~p~~~i--~~VEiDp~v~~vA~~~Fg~~---~~~rl~v~i~Dg~~~l~~~~~~~ 612 (772)
.+.+||.||+|+|.++. .+...+|...| ++||+++.|++.|++.+.-. ..-++.+..+|+.++......
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-- 129 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE-- 129 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT--
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc--
Confidence 45689999999996543 33444577755 99999999999999986311 122344556777666432110
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 613 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
+..+.+||+|++-. ....+.. -..+|+.+++.|+|||.|++-..+
T Consensus 130 -------------------------~~~~~~fD~V~~~~----~l~~~~d------~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 130 -------------------------KKELQKWDFIHMIQ----MLYYVKD------IPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp -------------------------TTCCCCEEEEEEES----CGGGCSC------HHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred -------------------------ccCCCceeEEEEee----eeeecCC------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 01136799999721 1111111 167999999999999999987655
Q ss_pred CCh
Q 004133 693 RSQ 695 (772)
Q Consensus 693 ~~~ 695 (772)
.+.
T Consensus 175 ~~~ 177 (292)
T 2aot_A 175 GSS 177 (292)
T ss_dssp TTS
T ss_pred CCc
Confidence 543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=86.64 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=77.6
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 624 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 624 (772)
+||.||+|.|.++..+... ..++++||+++.+++.|++.+.- ...+++++.+|..++ .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~--------------- 89 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQE-KGVKITTVQSNLADF----D--------------- 89 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHH-HTCCEEEECCBTTTB----S---------------
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHh-cCCceEEEEcChhhc----C---------------
Confidence 9999999999999888876 35999999999999999988731 112688998887553 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 625 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|++.. .. + ++. .-..+|+.+++.|+|||.+++.....
T Consensus 90 --------------~~~~~fD~v~~~~-~~-----~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 90 --------------IVADAWEGIVSIF-CH-----L--PSS--LRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp --------------CCTTTCSEEEEEC-CC-----C--CHH--HHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred --------------CCcCCccEEEEEh-hc-----C--CHH--HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 1135799999732 11 0 111 13679999999999999999987544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-06 Score=94.32 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=78.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++.++.+.. ..+|++||++ .+++.|++.+.. ...++++++.+|..++ .
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~---------- 125 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI----S---------- 125 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC----C----------
T ss_pred CCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc----C----------
Confidence 456789999999999999999883 3499999999 999999988721 1246799999998654 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
. ..+||+|+.+.-..- ....-.-..++..+.+.|+|||++++
T Consensus 126 -------------------~-~~~~D~Iv~~~~~~~-------l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 126 -------------------L-PEKVDVIISEWMGYF-------LLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp -------------------C-SSCEEEEEECCCBTT-------BTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred -------------------c-CCcceEEEEcChhhc-------ccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 0 257999999541110 01111236789999999999999984
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.2e-07 Score=91.70 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=73.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|... ..+|++||+++.+++.|++. .++++++.+|+.+.+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~-------------- 105 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELP-------------- 105 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCC--------------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccC--------------
Confidence 34579999999999999999888 46999999999999999998 2478999999753211
Q ss_pred cccccccCCCCCCCCCCCCC-CCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 621 HGNEITSNNTRSCNGNCTAS-NARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~-~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
.. ...||+|+.. .+ + ..+|+.+.+.|+|||.++
T Consensus 106 ------------------~~~~~~fD~v~~~---~~-------~------~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 106 ------------------AGLGAPFGLIVSR---RG-------P------TSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ------------------TTCCCCEEEEEEE---SC-------C------SGGGGGHHHHEEEEEEEE
T ss_pred ------------------CcCCCCEEEEEeC---CC-------H------HHHHHHHHHHcCCCcEEE
Confidence 11 3579999985 11 1 466889999999999998
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-06 Score=89.53 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=79.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++..|... ..+|++||+++.+++.|++.+.- ...+++++.+|..++ .
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~----~----------- 101 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKE-RNLKIEFLQGDVLEI----A----------- 101 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEESCGGGC----C-----------
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHh-cCCceEEEECChhhc----c-----------
Confidence 34579999999999999988886 35899999999999999988732 123689999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...+||+|++...... .. ++. --..+|+.+++.|+|||++++.+.+
T Consensus 102 -------------------~~~~fD~v~~~~~~~~----~~-~~~--~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 102 -------------------FKNEFDAVTMFFSTIM----YF-DEE--DLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp -------------------CCSCEEEEEECSSGGG----GS-CHH--HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------cCCCccEEEEcCCchh----cC-CHH--HHHHHHHHHHHHcCCCeEEEEeccc
Confidence 0256999997321110 00 000 1267899999999999999988754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=91.27 Aligned_cols=104 Identities=11% Similarity=0.075 Sum_probs=78.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|.++..|... ..+|++||+++.+++.|++.+... .-+++++.+|+.++..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~--------------- 181 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKE-NLNISTALYDINAANI--------------- 181 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCGGGCCC---------------
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHc-CCceEEEEeccccccc---------------
Confidence 5679999999999999999887 359999999999999999987421 1279999999865311
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+||+|++..-- .-+ +++ .-..+++.+++.|+|||++++-.
T Consensus 182 -------------------~~~fD~i~~~~~~----~~~--~~~--~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 182 -------------------QENYDFIVSTVVF----MFL--NRE--RVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp -------------------CSCEEEEEECSSG----GGS--CGG--GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------------------cCCccEEEEccch----hhC--CHH--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 3679999983210 000 111 12589999999999999977644
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.9e-06 Score=85.97 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=77.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..+.... .+|++||+++.+++.|++.+.-.. +++++.+|+.+.+..
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~------------- 131 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEE------------- 131 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGG-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccccccc-------------
Confidence 345689999999999999999886 689999999999999999985322 799999998662111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
...||+|+++..- .++. ..+.+.|+|||.+++.....
T Consensus 132 --------------------~~~fD~v~~~~~~-----------~~~~-----~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 132 --------------------EKPYDRVVVWATA-----------PTLL-----CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp --------------------GCCEEEEEESSBB-----------SSCC-----HHHHHTEEEEEEEEEEECSS
T ss_pred --------------------CCCccEEEECCcH-----------HHHH-----HHHHHHcCCCcEEEEEEcCC
Confidence 2569999985311 1121 36888999999999987544
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-06 Score=86.97 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=76.9
Q ss_pred CCCCeEEEEcccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|+|.+ ..++.. +..+|++||+++.+++.|++.+.- ...+++++.+|+.++ .
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~~~d~~~~----~---------- 84 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRE-NNFKLNISKGDIRKL----P---------- 84 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHH-HTCCCCEEECCTTSC----C----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHh-cCCceEEEECchhhC----C----------
Confidence 3457999999999976 344433 346999999999999999988632 124688999987542 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|++. .....+ |+. --..+++.+++.|+|||.+++...+.
T Consensus 85 -------------------~~~~~fD~v~~~----~~l~~~--~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 85 -------------------FKDESMSFVYSY----GTIFHM--RKN--DVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp -------------------SCTTCEEEEEEC----SCGGGS--CHH--HHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred -------------------CCCCceeEEEEc----ChHHhC--CHH--HHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 113679999972 110111 111 13678999999999999999987654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.6e-06 Score=87.06 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=78.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..+...+|..+++++|++ .+++.|++.+ |+ .++++++.+|..+. ..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~--~~--------- 229 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV--ASRYHTIAGSAFEV--DY--------- 229 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC--GGGEEEEESCTTTS--CC---------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC--CcceEEEecccccC--CC---------
Confidence 45679999999999999999999999999999999 9999999886 43 45799999987542 11
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC---cHHHHHHHHHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~---~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|++-- . ...+- -..+|+.+++.|+|||.+++.-
T Consensus 230 -----------------------~~~~D~v~~~~--~---------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 230 -----------------------GNDYDLVLLPN--F---------LHHFDVATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp -----------------------CSCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------CCCCcEEEEcc--h---------hccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 13499999811 0 11111 2589999999999999776643
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-06 Score=82.48 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=86.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC---------CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEE-EccHHHHHH--hhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF---------VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH-ITDGIKFVR--EMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~---------~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~-i~Dg~~~l~--~~~ 609 (772)
...+||+||+|.|.++..|...++. .+|++||+++.. . -++++++ .+|....-. ...
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~---~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P---LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C---CTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c---CCCCeEEEeccCCCHHHHHHHH
Confidence 4578999999999999999998764 799999999941 1 2467888 888544311 100
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc--------HHHHHHHHHccC
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE--------GSFLLTVKDALS 681 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~--------~~fl~~~~~~L~ 681 (772)
. ...+..||+|+.|..... .+. ...+ ..+++.+.+.|+
T Consensus 91 ~---------------------------~~~~~~fD~V~~~~~~~~--~~~-----~~~~~~~~~~~~~~~l~~~~~~Lk 136 (196)
T 2nyu_A 91 E---------------------------VLPGRRADVILSDMAPNA--TGF-----RDLDHDRLISLCLTLLSVTPDILQ 136 (196)
T ss_dssp H---------------------------HSGGGCEEEEEECCCCCC--CSC-----HHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred H---------------------------hcCCCCCcEEEeCCCCCC--CCC-----cccCHHHHHHHHHHHHHHHHHHhc
Confidence 0 001246999999652110 010 1111 378999999999
Q ss_pred CCcEEEEEecCCChhHHHHHHHHHHHhccceEEEe
Q 004133 682 EQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 682 ~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
|||.|++..+... . ...+...++..|..+..++
T Consensus 137 pgG~lv~~~~~~~-~-~~~~~~~l~~~f~~v~~~~ 169 (196)
T 2nyu_A 137 PGGTFLCKTWAGS-Q-SRRLQRRLTEEFQNVRIIK 169 (196)
T ss_dssp EEEEEEEEECCSG-G-GHHHHHHHHHHEEEEEEEC
T ss_pred CCCEEEEEecCCc-c-HHHHHHHHHHHhcceEEEC
Confidence 9999999876543 2 2456777888898877665
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4.5e-07 Score=93.66 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=40.7
Q ss_pred CCCeEEEEcccccHHHHHHHHh--CCCCcEEEEEcCHHHHHHHHHhcC
Q 004133 542 KSVKAVVIGLGAGLLPMFLHEC--MPFVGIEAVELDLTMLNLAEDYFG 587 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~--~p~~~i~~VEiDp~v~~vA~~~Fg 587 (772)
.+.+||.+|+|+|.++..+... .+..+|++||+|+.+++.|++...
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~ 98 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA 98 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHH
Confidence 4578999999999999999887 566799999999999999997763
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=87.58 Aligned_cols=100 Identities=14% Similarity=0.127 Sum_probs=78.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..+...+|..+++++|+ |.+++.|++.+ ++ .+|++++.+|..+. .
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----~-------- 253 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKE----S-------- 253 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--TTTEEEEECCTTTS----C--------
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC--CCCEEEEeCccccC----C--------
Confidence 4567999999999999999999999999999999 99999999886 44 46799999997653 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC---cHHHHHHHHHccCCCcEEEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~---~~~fl~~~~~~L~~~Gilv~N 689 (772)
-..+|+|++.-- -..+- -..+|+.+++.|+|||.+++.
T Consensus 254 -----------------------~~~~D~v~~~~v-----------lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 294 (359)
T 1x19_A 254 -----------------------YPEADAVLFCRI-----------LYSANEQLSTIMCKKAFDAMRSGGRLLIL 294 (359)
T ss_dssp -----------------------CCCCSEEEEESC-----------GGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred -----------------------CCCCCEEEEech-----------hccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 022499987210 01111 267899999999999998654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=87.73 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++..+... + .++++||+++.+++.|++.+. +++.+|..++...
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~d~~~~~~~------------- 88 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD-------HVVLGDIETMDMP------------- 88 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS-------EEEESCTTTCCCC-------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC-------cEEEcchhhcCCC-------------
Confidence 35679999999999999999888 5 799999999999999998762 6777876542100
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|++.- ....+.. ...+|+.+++.|+|||.+++.+...
T Consensus 89 ------------------~~~~~fD~v~~~~----~l~~~~~------~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 89 ------------------YEEEQFDCVIFGD----VLEHLFD------PWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp ------------------SCTTCEEEEEEES----CGGGSSC------HHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred ------------------CCCCccCEEEECC----hhhhcCC------HHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 1136799999731 1111111 1689999999999999999987554
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-06 Score=91.06 Aligned_cols=99 Identities=12% Similarity=0.189 Sum_probs=78.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||+||+|+|.++..+...+|..+|++||+++.+++.|++.. +++.++.+|+.+. .
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~----~----------- 143 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL----P----------- 143 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC----S-----------
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhC----C-----------
Confidence 3457899999999999999999887789999999999999999885 4578888887542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
.....||+|+.- +. ..+++.+.+.|+|||.+++......
T Consensus 144 ------------------~~~~~fD~v~~~-~~----------------~~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 144 ------------------FSDTSMDAIIRI-YA----------------PCKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp ------------------BCTTCEEEEEEE-SC----------------CCCHHHHHHHEEEEEEEEEEEECTT
T ss_pred ------------------CCCCceeEEEEe-CC----------------hhhHHHHHHhcCCCcEEEEEEcCHH
Confidence 013579999961 11 1248999999999999998776543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=88.29 Aligned_cols=110 Identities=13% Similarity=0.023 Sum_probs=75.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH----HHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL----AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v----A~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.||+|.|.++..|...+|..+|++||+++.+++. |++......-++++++++|+.++ .
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l----~------- 94 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERL----P------- 94 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTC----C-------
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhC----C-------
Confidence 34578999999999999999999998999999999998874 33322111235799999998652 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC-CCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS-SGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~-~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..... |.|++........ .-+. -...+|+.+++.|+|||.|++.+
T Consensus 95 ----------------------~~~~~-d~v~~~~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 95 ----------------------PLSGV-GELHVLMPWGSLLRGVLG------SSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp ----------------------SCCCE-EEEEEESCCHHHHHHHHT------SSSHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------------------CCCCC-CEEEEEccchhhhhhhhc------cHHHHHHHHHHHcCCCcEEEEEe
Confidence 01233 7666433111000 0000 01688999999999999999854
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.8e-07 Score=98.06 Aligned_cols=74 Identities=8% Similarity=-0.118 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--C-CCcEEEEeeccCc-ccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--R-SDMRWRVMDMTSM-QVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~-~~v~f~~~D~~~l-~~~~~~sfDvVi~~ 142 (772)
++.+|||+|||+|..+..++..+. +|+++|+|+.+++.+++++... + .+++|+++|+.+. +.+++++||+|+..
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 478999999999999999988765 7999999999999998887543 2 4799999999984 31234689999974
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-06 Score=93.24 Aligned_cols=104 Identities=9% Similarity=0.049 Sum_probs=79.6
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..+||.||+|.|.+...+.+.+|..+++++|+ |.+++.|++++. ....+|++++.+|..+.-...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------------- 245 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------------- 245 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC-------------
Confidence 68999999999999999999999999999999 899999998862 112468999999975431001
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|++-- . -..+-+ ..+|+.+++.|+|||.+++.-
T Consensus 246 -------------------~~~~D~v~~~~----v-------lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 246 -------------------GGAADVVMLND----C-------LHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp -------------------TCCEEEEEEES----C-------GGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------------------CCCccEEEEec----c-------cccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 24599999811 0 111122 579999999999999888753
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-06 Score=94.82 Aligned_cols=103 Identities=15% Similarity=0.193 Sum_probs=83.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCC-CCC-eEEEEccHHHHHH-hhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQ-DKS-LKVHITDGIKFVR-EMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~-~~r-l~v~i~Dg~~~l~-~~~~~~~~~~~ 617 (772)
...+||.++.|.|.++..+....++ .+|++||+||..++.+++...+.. +++ ++++.+|+.++++ ...
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~-------- 123 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWG-------- 123 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCS--------
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhC--------
Confidence 3468999999999999988887654 589999999999999999873321 345 9999999999987 642
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
.+||+|++|.+.. + .+|+..+.+.|+++|++++-.
T Consensus 124 ------------------------~~fD~V~lDP~g~--------~------~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 124 ------------------------FGFDYVDLDPFGT--------P------VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ------------------------SCEEEEEECCSSC--------C------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------------CCCcEEEECCCcC--------H------HHHHHHHHHHhCCCCEEEEEe
Confidence 5699999976311 1 579999999999999988754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-06 Score=93.14 Aligned_cols=115 Identities=10% Similarity=0.187 Sum_probs=72.4
Q ss_pred CCCeEEEEcccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCC-----CeEEEEccHHH--HHHhhcccC
Q 004133 542 KSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDK-----SLKVHITDGIK--FVREMKSSS 612 (772)
Q Consensus 542 ~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~-----rl~v~i~Dg~~--~l~~~~~~~ 612 (772)
...+||.||+|+|. +..++.. +..+|++||+++.+++.|++... ..... +++++++|... +-.++..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~-- 123 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE-- 123 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT--
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc--
Confidence 45789999999995 4444443 23589999999999999998862 10010 25677777621 0011110
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 613 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.....+||+|++-. .- .....+.+. ..+|+.++++|+|||+|++....
T Consensus 124 -------------------------~~~~~~FD~V~~~~-~l----hy~~~~~~~--~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 124 -------------------------VFYFGKFNIIDWQF-AI----HYSFHPRHY--ATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp -------------------------TCCSSCEEEEEEES-CG----GGTCSTTTH--HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------------cccCCCeeEEEECc-hH----HHhCCHHHH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence 00135799998621 10 001112222 78999999999999999987754
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-06 Score=90.29 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=81.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.+...+... +..++++||+++.+++.|++.+.-. ...+++++.+|+.+. ...
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~---------- 129 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR--HMD---------- 129 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS--CCC----------
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc--ccC----------
Confidence 45579999999999887777776 4559999999999999999987421 235799999997653 000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
....||+|++..--. .+..+.. --..+|+.+++.|+|||.+++.....
T Consensus 130 --------------------~~~~fD~v~~~~~l~----~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 130 --------------------LGKEFDVISSQFSFH----YAFSTSE--SLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp --------------------CSSCEEEEEEESCGG----GGGSSHH--HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred --------------------CCCCcCEEEECchhh----hhcCCHH--HHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 136799999852100 0000000 12679999999999999999987543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-05 Score=87.58 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=79.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..|...+|..+++++|+ |.+++.|++.+ |+ .++++++.+|..+ ...
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~---~~~-------- 246 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK---PLP-------- 246 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS---CCS--------
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC---cCC--------
Confidence 4567999999999999999999999999999999 99999999886 43 4589999999753 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..||+|++.- . -..+-+ ..+|+.+++.|+|||.+++.-.
T Consensus 247 ------------------------~~~D~v~~~~--v---------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 247 ------------------------VTADVVLLSF--V---------LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp ------------------------CCEEEEEEES--C---------GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ------------------------CCCCEEEEec--c---------ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2399999831 0 011222 3799999999999998887544
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.3e-07 Score=93.05 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCH-------HHHHHHHHHhccCC--CCcEEEEeeccCc-ccccC--C
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK-------VVISDMLRRNVRDR--SDMRWRVMDMTSM-QVFMD--E 134 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~-------~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~~~--~ 134 (772)
.++.+|||+|||+|.++..++..|. +|+++|+|+ .+++.++++....+ .+++|+++|+.++ +.+++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 3568999999999999999999875 699999999 99988876543222 2499999999885 22444 7
Q ss_pred CccEEEecccccc
Q 004133 135 TFDVILDKGGLDA 147 (772)
Q Consensus 135 sfDvVi~~~~l~~ 147 (772)
+||+|+...++.+
T Consensus 161 ~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 161 KPDIVYLDPMYPE 173 (258)
T ss_dssp CCSEEEECCCC--
T ss_pred CccEEEECCCCCC
Confidence 8999998776654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.2e-07 Score=94.50 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=79.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.+|+|.|.++..++.. +..+|++||+||..++.|++...+. -.++++++.+|+.+|..
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~------------- 189 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG------------- 189 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------------
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-------------
Confidence 44578999999999888877776 4468999999999999999887322 25789999999987632
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||.||+|.- + ...+||..+.++|++||++.+..
T Consensus 190 ---------------------~~~~D~Vi~~~p-----------~---~~~~~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 190 ---------------------ENIADRILMGYV-----------V---RTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp ---------------------CSCEEEEEECCC-----------S---SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred ---------------------ccCCCEEEECCC-----------C---cHHHHHHHHHHHcCCCCEEEEEe
Confidence 256999998531 1 23578999999999999987643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-06 Score=89.66 Aligned_cols=108 Identities=22% Similarity=0.225 Sum_probs=79.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|.++..+.... .++++||+++.+++.|++.+.-. ..+++++.+|..++ .
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----~------------ 97 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDISNL----N------------ 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCGGGC----C------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHhhc-CCCeEEEecccccC----C------------
Confidence 56799999999999988888773 58999999999999999987321 22789999987653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
. ...||+|++..+.- ..+ +..---..+|+.+++.|+|||.+++.+..
T Consensus 98 -----------------~-~~~fD~v~~~~~~l---~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 98 -----------------I-NRKFDLITCCLDST---NYI---IDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp -----------------C-SCCEEEEEECTTGG---GGC---CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred -----------------c-cCCceEEEEcCccc---ccc---CCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 0 15699999832110 001 00001267999999999999999997754
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.1e-06 Score=90.48 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=82.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...++|.+|+|+|.++..+.... |..+|+++|+||.+++.|++.+ |+ + +++++.+|+.++...
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~--~-~i~~~~~D~~~~~~~---------- 269 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL--S-WIRFLRADARHLPRF---------- 269 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC--T-TCEEEECCGGGGGGT----------
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC--C-ceEEEeCChhhCccc----------
Confidence 45689999999999999999887 7789999999999999999886 54 2 799999998875221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcCC--CcHHHHHHHHHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AADF--VEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P-p~~f--~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|++|.--+ .... ...+ +-..+++.+++.|+|||.+++-.
T Consensus 270 -----------------------~~~~D~Ii~npPyg-----~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 270 -----------------------FPEVDRILANPPHG-----LRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp -----------------------CCCCSEEEECCCSC-----C----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred -----------------------cCCCCEEEECCCCc-----CccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 23489999954211 1100 1111 12689999999999999999854
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-06 Score=94.04 Aligned_cols=107 Identities=11% Similarity=0.045 Sum_probs=78.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+.+||.||+|.|.++..|.+.+|..+++++|+ |.+++.|++.+.-. ..+|++++.+|..+. +..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~----------- 244 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDR--DVP----------- 244 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSS--SCC-----------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccccc--CCC-----------
Confidence 567999999999999999999999999999999 99999999987421 246899999996431 000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
. ...||+|++----. .+ |.+ --..+|+.+++.|+|||.+++.
T Consensus 245 ------------------~-p~~~D~v~~~~vlh----~~--~~~--~~~~~l~~~~~~L~pgG~l~i~ 286 (363)
T 3dp7_A 245 ------------------F-PTGFDAVWMSQFLD----CF--SEE--EVISILTRVAQSIGKDSKVYIM 286 (363)
T ss_dssp ------------------C-CCCCSEEEEESCST----TS--CHH--HHHHHHHHHHHHCCTTCEEEEE
T ss_pred ------------------C-CCCcCEEEEechhh----hC--CHH--HHHHHHHHHHHhcCCCcEEEEE
Confidence 0 14699998721000 00 000 1146899999999999988774
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-06 Score=90.10 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=64.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCe--EEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~--V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
.+...+.+.+.. .++.+|||+|||+|.++. +.. + .+ |+++|+++.|++.++++... .++++++++|+.+++
T Consensus 8 ~i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~-~~~v~~i~~D~~~~~ 80 (252)
T 1qyr_A 8 FVIDSIVSAINP---QKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCC---CTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCC---CCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhcc-CCceEEEECchhhCC
Confidence 455556666654 577899999999999999 754 4 35 99999999999999876632 357999999999987
Q ss_pred cccC-----CCccEEEecccc
Q 004133 130 VFMD-----ETFDVILDKGGL 145 (772)
Q Consensus 130 ~~~~-----~sfDvVi~~~~l 145 (772)
+++ +..|.|+++...
T Consensus 81 -~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 81 -FGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp -HHHHHHHHTSCEEEEEECCT
T ss_pred -HHHhhcccCCceEEEECCCC
Confidence 543 234677766543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.6e-06 Score=88.75 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=77.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+|+.||+|.|.+...|.+.+|+.++++.|+ |.|++.|+++......+|++++.+|..+ . .
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~---~-~----------- 241 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFK---D-P----------- 241 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTT---S-C-----------
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcccc---C-C-----------
Confidence 3456899999999999999999999999999998 8999999999866567899999999632 1 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~N 689 (772)
...+|+|++ ... + -.+-+ ..+|+++++.|+|||.+++.
T Consensus 242 --------------------~~~~D~~~~----~~v---l----h~~~d~~~~~iL~~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 242 --------------------LPEADLYIL----ARV---L----HDWADGKCSHLLERIYHTCKPGGGILVI 282 (353)
T ss_dssp --------------------CCCCSEEEE----ESS---G----GGSCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred --------------------CCCceEEEe----eee---c----ccCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 245799987 110 0 11112 46799999999999976654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.8e-06 Score=89.60 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=77.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+||.||+|.|.++..+...+|..+++++|+ |.+++.|++.+.-. ..++++++.+|..+ ..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~-------------- 230 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ---EV-------------- 230 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT---CC--------------
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC---CC--------------
Confidence 7999999999999999999999999999999 99999999886210 14689999998754 11
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|++----. .+ +++ .-..+|+.+++.|+|||.+++.-
T Consensus 231 ------------------~~~~D~v~~~~vl~----~~--~~~--~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 231 ------------------PSNGDIYLLSRIIG----DL--DEA--ASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp ------------------CSSCSEEEEESCGG----GC--CHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ------------------CCCCCEEEEchhcc----CC--CHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 14699999721100 00 000 11489999999999999888763
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.8e-06 Score=92.95 Aligned_cols=105 Identities=11% Similarity=0.043 Sum_probs=77.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHH-------HHhc---CCCCCCCeEEEEccHHH---HHHh
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA-------EDYF---GFTQDKSLKVHITDGIK---FVRE 607 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA-------~~~F---g~~~~~rl~v~i~Dg~~---~l~~ 607 (772)
....+||.||+|.|.++..+....+..+|++||+++.+++.| ++.+ |+. -.+++++.+|+.. .+..
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i~gD~~~~~~~~~~ 319 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSLKKSFVDNNRVAE 319 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEESSCSTTCHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEEEcCcccccccccc
Confidence 455789999999999999999987777899999999999999 7664 531 2579999987652 1221
Q ss_pred hcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 608 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
. ...||+|++...- + .+. -..+|..+.+.|+|||.++
T Consensus 320 ~--------------------------------~~~FDvIvvn~~l------~---~~d--~~~~L~el~r~LKpGG~lV 356 (433)
T 1u2z_A 320 L--------------------------------IPQCDVILVNNFL------F---DED--LNKKVEKILQTAKVGCKII 356 (433)
T ss_dssp H--------------------------------GGGCSEEEECCTT------C---CHH--HHHHHHHHHTTCCTTCEEE
T ss_pred c--------------------------------cCCCCEEEEeCcc------c---ccc--HHHHHHHHHHhCCCCeEEE
Confidence 1 1469999973110 0 011 1467889999999999998
Q ss_pred EE
Q 004133 688 VN 689 (772)
Q Consensus 688 ~N 689 (772)
+-
T Consensus 357 i~ 358 (433)
T 1u2z_A 357 SL 358 (433)
T ss_dssp ES
T ss_pred Ee
Confidence 74
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-05 Score=77.67 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=81.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..+.... ..+|++||+|+.+++.|++.+....- +++++.+|+.++ .
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~----~------------ 110 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF----N------------ 110 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC----C------------
T ss_pred CcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHc----C------------
Confidence 45789999999999999988873 34899999999999999998743211 799999998763 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
..||+|++|.--... ..-....+++.+.+.| +|++++.+. .....+.+
T Consensus 111 --------------------~~~D~v~~~~p~~~~--------~~~~~~~~l~~~~~~l--~~~~~~~~~--~~~~~~~~ 158 (207)
T 1wy7_A 111 --------------------SRVDIVIMNPPFGSQ--------RKHADRPFLLKAFEIS--DVVYSIHLA--KPEVRRFI 158 (207)
T ss_dssp --------------------CCCSEEEECCCCSSS--------STTTTHHHHHHHHHHC--SEEEEEEEC--CHHHHHHH
T ss_pred --------------------CCCCEEEEcCCCccc--------cCCchHHHHHHHHHhc--CcEEEEEeC--CcCCHHHH
Confidence 369999986421110 1123478899999988 777766532 23333444
Q ss_pred HHHHHH
Q 004133 702 ISRMKM 707 (772)
Q Consensus 702 ~~~l~~ 707 (772)
...+.+
T Consensus 159 ~~~l~~ 164 (207)
T 1wy7_A 159 EKFSWE 164 (207)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.9e-06 Score=90.41 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=77.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHH----------hcCCCCCCCeEEEEccHHHHHHhhcc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED----------YFGFTQDKSLKVHITDGIKFVREMKS 610 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~----------~Fg~~~~~rl~v~i~Dg~~~l~~~~~ 610 (772)
....+||.||+|.|.++..++...+..+|++||++|.++++|++ .+|+. .++++++.+|..+.--...
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-~~rVefi~GD~~~lp~~d~- 249 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTLERGDFLSEEWRER- 249 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-CCEEEEEECCTTSHHHHHH-
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEEECcccCCccccc-
Confidence 45578999999999999999888776579999999999999986 34652 3589999999876421110
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 611 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
-..+|+|++. +. . + .+. -...|..+.+.|+|||.||+.
T Consensus 250 ------------------------------~~~aDVVf~N--n~-~---F---~pd--l~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 250 ------------------------------IANTSVIFVN--NF-A---F---GPE--VDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp ------------------------------HHTCSEEEEC--CT-T---C---CHH--HHHHHHHHHTTSCTTCEEEES
T ss_pred ------------------------------cCCccEEEEc--cc-c---c---Cch--HHHHHHHHHHcCCCCcEEEEe
Confidence 0358999972 11 0 0 011 245677888999999999974
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-06 Score=96.23 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=74.3
Q ss_pred CCCCeEEEEccc-------ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHH--HHHhhccc
Q 004133 541 GKSVKAVVIGLG-------AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK--FVREMKSS 611 (772)
Q Consensus 541 ~~~~~vLviGlG-------~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~--~l~~~~~~ 611 (772)
.++.+||.||+| +|....++...+|..+|++||++|.+. + ..++++++++|+.+ |......
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~---~~~rI~fv~GDa~dlpf~~~l~~- 284 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V---DELRIRTIQGDQNDAEFLDRIAR- 284 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G---CBTTEEEEECCTTCHHHHHHHHH-
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h---cCCCcEEEEecccccchhhhhhc-
Confidence 456899999999 676667777778999999999999972 1 35789999999865 4433220
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 612 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
....||+|+.|.. . . + . -...+|+.+.+.|+|||+|++.
T Consensus 285 ----------------------------~d~sFDlVisdgs-H-~---~----~--d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 285 ----------------------------RYGPFDIVIDDGS-H-I---N----A--HVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp ----------------------------HHCCEEEEEECSC-C-C---H----H--HHHHHHHHHGGGEEEEEEEEEE
T ss_pred ----------------------------ccCCccEEEECCc-c-c---c----h--hHHHHHHHHHHhcCCCeEEEEE
Confidence 0156999998541 1 0 0 1 1267899999999999999985
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-05 Score=83.65 Aligned_cols=109 Identities=22% Similarity=0.290 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc------cCCCCcEEEEeeccCcccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV------RDRSDMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~------~~~~~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
...+||-+|.|.|..+.++.+. +..+|+.+||++.+++.+++-+. -..++++++.+|+...-.-..++||+|+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 4679999999999999999987 56789999999999999976542 2357899999999885424567999998
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...+ +-...+. .-.-..+++.+++.|+|||++++-.
T Consensus 163 ~D~~-dp~~~~~--~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 163 SDCT-DPIGPGE--SLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp ESCC-CCCCTTC--CSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EeCC-CcCCCch--hhcCHHHHHHHHHHhCCCCEEEEec
Confidence 5432 1110000 0002479999999999999999754
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-06 Score=85.88 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=73.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
+.+.+||.||+|.|.++..+....|.++++++|+|+.++++|++.+... ...++++ .|...- ..
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~---~~---------- 112 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD---VY---------- 112 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH---HT----------
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc---CC----------
Confidence 5678999999999999999999999999999999999999999998321 1224555 565443 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH--HHHHHHHHccCCCcEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG--SFLLTVKDALSEQGLFI 687 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~--~fl~~~~~~L~~~Gilv 687 (772)
...||+|+. .+- -++++. ..+..+.+.|+|+|+||
T Consensus 113 ---------------------~~~~DvVLa--~k~----------LHlL~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 113 ---------------------KGTYDVVFL--LKM----------LPVLKQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp ---------------------TSEEEEEEE--ETC----------HHHHHHTTCCHHHHHHTCEEEEEEE
T ss_pred ---------------------CCCcChhhH--hhH----------HHhhhhhHHHHHHHHHHhCCCCEEE
Confidence 367999987 221 112211 23558999999999887
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=5e-07 Score=92.44 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=76.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.||+|.|.++..+.... .+|++||+++.+++.|++.+.... .++++++.+|+.++. .
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~----------- 141 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---S----------- 141 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---G-----------
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---c-----------
Confidence 56799999999999999998874 699999999999999998873211 358999999999874 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|++|.- ..+...+. ..+..+++.|+|||++++..
T Consensus 142 --------------------~~~~D~v~~~~~----~~~~~~~~------~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 142 --------------------FLKADVVFLSPP----WGGPDYAT------AETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp --------------------GCCCSEEEECCC----CSSGGGGG------SSSBCTTTSCSSCHHHHHHH
T ss_pred --------------------cCCCCEEEECCC----cCCcchhh------hHHHHHHhhcCCcceeHHHH
Confidence 256999998531 11111111 14456788899999877543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-06 Score=89.43 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=74.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++..+.. +..+|++||++|.+++.|++.. +++++++|+.++ .
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~----~----------- 89 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENL----A----------- 89 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSC----C-----------
T ss_pred CCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhC----C-----------
Confidence 4568999999999999999987 5679999999999999987765 789999997542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....||+|++-.-- ..+. --..+|+.+.+.|+ ||.+++-.+
T Consensus 90 ------------------~~~~~fD~v~~~~~l----~~~~------~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 90 ------------------LPDKSVDGVISILAI----HHFS------HLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp ------------------SCTTCBSEEEEESCG----GGCS------SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred ------------------CCCCCEeEEEEcchH----hhcc------CHHHHHHHHHHHhC-CcEEEEEEc
Confidence 113679999983211 1111 12689999999999 995555443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=92.62 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=85.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|+|.|.++.. .. +..+|++||++|.+++.|++.+.... +++++++.+|+.+++
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--------------- 256 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--------------- 256 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------------
T ss_pred CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------------
Confidence 457899999999999888 55 45699999999999999999873321 357999999998764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
.+||+|++|. |. ...+++..+.+.|+|||++++...+.. .+.
T Consensus 257 ---------------------~~fD~Vi~dp------------P~--~~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~ 298 (336)
T 2yx1_A 257 ---------------------VKGNRVIMNL------------PK--FAHKFIDKALDIVEEGGVIHYYTIGKD---FDK 298 (336)
T ss_dssp ---------------------CCEEEEEECC------------TT--TGGGGHHHHHHHEEEEEEEEEEEEESS---SHH
T ss_pred ---------------------CCCcEEEECC------------cH--hHHHHHHHHHHHcCCCCEEEEEEeecC---chH
Confidence 2499999953 11 113899999999999999988765555 344
Q ss_pred HHHHHHHhc
Q 004133 701 VISRMKMVF 709 (772)
Q Consensus 701 v~~~l~~vF 709 (772)
+.+.+++.+
T Consensus 299 ~~~~l~~~~ 307 (336)
T 2yx1_A 299 AIKLFEKKC 307 (336)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 566666664
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.3e-05 Score=79.74 Aligned_cols=148 Identities=19% Similarity=0.228 Sum_probs=97.4
Q ss_pred cCCCCeEEEEcccccHHH----HHHHHhCCCCcEEEEEcCHH-----------HHHHHHHhc----CCCCCC--CeEEEE
Q 004133 540 VGKSVKAVVIGLGAGLLP----MFLHECMPFVGIEAVELDLT-----------MLNLAEDYF----GFTQDK--SLKVHI 598 (772)
Q Consensus 540 ~~~~~~vLviGlG~G~l~----~~L~~~~p~~~i~~VEiDp~-----------v~~vA~~~F----g~~~~~--rl~v~i 598 (772)
.....+||.+|.|+|.-. ..+.+..|..+++.|.++.. ..++++..+ .+ ++. .+++++
T Consensus 94 ~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~-~~~~v~L~l~~ 172 (308)
T 3vyw_A 94 ERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY-EGERLSLKVLL 172 (308)
T ss_dssp HCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE-ECSSEEEEEEE
T ss_pred CCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc-cCCcEEEEEEe
Confidence 355678999999999422 12345567766655544321 122222221 11 123 567899
Q ss_pred ccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHH
Q 004133 599 TDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD 678 (772)
Q Consensus 599 ~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~ 678 (772)
||+.+.+.+.. +.++|+|++|.|++.. .|++.+.++|+.+.+
T Consensus 173 GDa~~~l~~l~-------------------------------~~~~Da~flDgFsP~k-------NPeLWs~e~f~~l~~ 214 (308)
T 3vyw_A 173 GDARKRIKEVE-------------------------------NFKADAVFHDAFSPYK-------NPELWTLDFLSLIKE 214 (308)
T ss_dssp SCHHHHGGGCC-------------------------------SCCEEEEEECCSCTTT-------SGGGGSHHHHHHHHT
T ss_pred chHHHHHhhhc-------------------------------ccceeEEEeCCCCccc-------CcccCCHHHHHHHHH
Confidence 99999988864 2479999999999853 678999999999999
Q ss_pred ccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEecCCC
Q 004133 679 ALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSES 732 (772)
Q Consensus 679 ~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~~~~ 732 (772)
+++|||+|+ .++..... -..|+++==.|...+-...--+.++|+....
T Consensus 215 ~~~pgg~la--TYtaag~V----RR~L~~aGF~V~k~~G~g~KReml~A~~~~~ 262 (308)
T 3vyw_A 215 RIDEKGYWV--SYSSSLSV----RKSLLTLGFKVGSSREIGRKRKGTVASLKAP 262 (308)
T ss_dssp TEEEEEEEE--ESCCCHHH----HHHHHHTTCEEEEEECC---CEEEEEESSSC
T ss_pred HhCCCcEEE--EEeCcHHH----HHHHHHCCCEEEecCCCCCCCceeEEecCCC
Confidence 999999998 45555543 3456666445666664344456788876543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=7.6e-06 Score=89.01 Aligned_cols=103 Identities=16% Similarity=0.232 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+...+|..+++++|+ |.+++.|++.+.- ...++++++.+|..+ ...
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~---------- 247 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE---PLP---------- 247 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS---CCS----------
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC---CCC----------
Confidence 4567999999999999999999999999999999 9999999988621 124589999999753 111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..||+|++.-- -.++-+ ..+|+.+++.|+|||.+++.-
T Consensus 248 ----------------------~~~D~v~~~~v-----------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 288 (360)
T 1tw3_A 248 ----------------------RKADAIILSFV-----------LLNWPDHDAVRILTRCAEALEPGGRILIHE 288 (360)
T ss_dssp ----------------------SCEEEEEEESC-----------GGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----------------------CCccEEEEccc-----------ccCCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 24999987210 011222 379999999999999888654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-06 Score=90.38 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||||||+|.++...+.. +...|+|+|++..+...+.. ......++.+...++.... ++.+.+|+|++..+.
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~~g~~ii~~~~~~dv~~-l~~~~~DvVLSDmAp 166 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTTLGWNLIRFKDKTDVFN-MEVIPGDTLLCDIGE 166 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCGGG-SCCCCCSEEEECCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cccCCCceEEeeCCcchhh-cCCCCcCEEEecCcc
Confidence 57889999999999999988864 66679999998753211110 0011223444443333333 567899999998777
Q ss_pred cccccCccchHHHHHHHHHHHhccccC--eEEEEEEcC--chhh
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA--ESHV 185 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpG--G~~ii~~~~--~~~~ 185 (772)
+ .-....+......+|+-+.++|+|| |.|++-.|. .+.+
T Consensus 167 n-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~ 209 (282)
T 3gcz_A 167 S-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLI 209 (282)
T ss_dssp C-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHH
T ss_pred C-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccH
Confidence 6 2111111111234588889999999 999998888 4443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.12 E-value=9.2e-06 Score=84.15 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=76.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|.++..|... ..++++||+++.+++.|++... . .++.+|+.++ .
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~----~--~~~~~d~~~~----~------------ 109 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV----K--NVVEAKAEDL----P------------ 109 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC----S--CEEECCTTSC----C------------
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC----C--CEEECcHHHC----C------------
Confidence 5679999999999999988876 3589999999999999999865 1 2777776542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
.....||+|++...-- ..+ +. -..+|+.+++.|+|||.+++.+.++.
T Consensus 110 -----------------~~~~~fD~v~~~~~~~------~~~-~~--~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 110 -----------------FPSGAFEAVLALGDVL------SYV-EN--KDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp -----------------SCTTCEEEEEECSSHH------HHC-SC--HHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred -----------------CCCCCEEEEEEcchhh------hcc-cc--HHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 1136799999721000 000 11 47899999999999999999876653
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.9e-05 Score=78.26 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=70.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..+... +..+|++||++|.+++.|++.+. +++++.+|+.++ .
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~----~------------ 108 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEI----S------------ 108 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGC----C------------
T ss_pred CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHC----C------------
Confidence 4578999999999999998887 55579999999999999999875 689999998763 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..||+|++|.--.. + ..-....+++.+.+.| |+++++
T Consensus 109 --------------------~~~D~v~~~~p~~~----~----~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 109 --------------------GKYDTWIMNPPFGS----V----VKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp --------------------CCEEEEEECCCC---------------CHHHHHHHHHHE--EEEEEE
T ss_pred --------------------CCeeEEEECCCchh----c----cCchhHHHHHHHHHhc--CcEEEE
Confidence 46999998531110 0 0112367899999998 554443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-06 Score=86.25 Aligned_cols=111 Identities=10% Similarity=-0.077 Sum_probs=76.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcC-HHHHHHH---HHhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELD-LTMLNLA---EDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD-p~v~~vA---~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.||+|+|.++..|....|..+|++||++ +.|+++| ++...-..-++++++.+|+.++ ....
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~------- 94 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFEL------- 94 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGG-------
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhc-------
Confidence 34568999999999999999887888899999999 8888887 6554211124689999998665 1100
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...+|.|.+...-+. . . .........+|..+++.|+|||.|++
T Consensus 95 ------------------------~d~v~~i~~~~~~~~--~-~--~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 95 ------------------------KNIADSISILFPWGT--L-L--EYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp ------------------------TTCEEEEEEESCCHH--H-H--HHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred ------------------------cCeEEEEEEeCCCcH--H-h--hhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 145677665321000 0 0 00001236789999999999999998
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.6e-06 Score=86.12 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHH------HHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccC
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLT------MLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSS 612 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~------v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~ 612 (772)
....+||.||+|.|.++..+...+ |..+|++||+++. +++.|++.+.-. ..++++++.+| ++.....
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~--- 116 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT--NLSDDLG--- 116 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC--CTTTCCG---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC--hhhhccC---
Confidence 455799999999999999998885 6679999999997 899999887321 23689999998 2211110
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 613 ATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
......||+|++.--- ..+. . ...+++.++.+++|||.+++..+.
T Consensus 117 -------------------------~~~~~~fD~v~~~~~l----~~~~--~----~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 117 -------------------------PIADQHFDRVVLAHSL----WYFA--S----ANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp -------------------------GGTTCCCSEEEEESCG----GGSS--C----HHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred -------------------------CCCCCCEEEEEEccch----hhCC--C----HHHHHHHHHHHhCCCCEEEEEEec
Confidence 0013679999973211 1111 1 134777777878889999987654
Q ss_pred C
Q 004133 693 R 693 (772)
Q Consensus 693 ~ 693 (772)
.
T Consensus 162 ~ 162 (275)
T 3bkx_A 162 M 162 (275)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-05 Score=76.10 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCc-hhHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccC-CCccEEEeccc
Q 004133 68 PPPQILVPGCGNS-RLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMD-ETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G-~ls~~La~-~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~-~sfDvVi~~~~ 144 (772)
++.+|||+|||+| +.+..|++ .|+ +|+++|+++.+++ |++.|+++.. ... ..||+|++..
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~--------------~v~dDiF~P~-~~~Y~~~DLIYsir- 97 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG--------------IVRDDITSPR-MEIYRGAALIYSIR- 97 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT--------------EECCCSSSCC-HHHHTTEEEEEEES-
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc--------------eEEccCCCCc-ccccCCcCEEEEcC-
Confidence 4689999999999 79999997 788 6999999996654 8999999854 321 4899998743
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
+++| +...+-++++. -|.-+++..++.+..
T Consensus 98 ----PP~E-----l~~~i~~lA~~--v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 98 ----PPAE-----IHSSLMRVADA--VGARLIIKPLTGEDI 127 (153)
T ss_dssp ----CCTT-----THHHHHHHHHH--HTCEEEEECBTTBCC
T ss_pred ----CCHH-----HHHHHHHHHHH--cCCCEEEEcCCCCcC
Confidence 2222 44555555553 367788888776553
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-05 Score=86.57 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc------------C----CCeEEEEeCCHHHHHHHHHHhccCC-------------CCcE
Q 004133 69 PPQILVPGCGNSRLSEHLYDA------------G----FHGITNVDFSKVVISDMLRRNVRDR-------------SDMR 119 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~------------g----~~~V~gvDiS~~~I~~a~~~~~~~~-------------~~v~ 119 (772)
..+|+|+|||+|.++..+... | --+|..-|.........-+.+.... .+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999999877331 1 1247777766655443333222110 0112
Q ss_pred EEEeeccC---cccccCCCccEEEecccccccccCccch-------------------------------HHHHHHHHHH
Q 004133 120 WRVMDMTS---MQVFMDETFDVILDKGGLDALMEPELGH-------------------------------KLGNQYLSEV 165 (772)
Q Consensus 120 f~~~D~~~---l~~~~~~sfDvVi~~~~l~~l~~~~~~~-------------------------------~~~~~~l~ei 165 (772)
|..+.... -. |++++||+|+++.+|||+...+..- .....+|+..
T Consensus 133 f~~gvpgSFy~rl-fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRL-FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCC-SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhccc-CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433332 23 7899999999999999997433110 1255679999
Q ss_pred HhccccCeEEEEEEcCchh
Q 004133 166 KRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 166 ~rvLkpGG~~ii~~~~~~~ 184 (772)
++.|+|||++++...+...
T Consensus 212 a~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHEEEEEEEEEEEEECCC
T ss_pred HHHhCCCCEEEEEEecCCC
Confidence 9999999999999887643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-06 Score=90.76 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=80.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-------CCCCeEEEEccHHHHHHhhcccCcc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-------QDKSLKVHITDGIKFVREMKSSSAT 614 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-------~~~rl~v~i~Dg~~~l~~~~~~~~~ 614 (772)
.+.+||.||+|.|.+...+... +..++++||+++.+++.|++.+.-. ...+++++++|+.+..-...
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~----- 107 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDK----- 107 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTT-----
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhh-----
Confidence 5679999999999888888774 5669999999999999999886310 23478999999765310000
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
+ ......||+|++.. . ...+ ..+. --..+|..+++.|+|||+|++.+...
T Consensus 108 -----~-----------------~~~~~~fD~V~~~~--~--l~~~---~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 108 -----F-----------------RDPQMCFDICSCQF--V--CHYS---FESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp -----C-----------------SSTTCCEEEEEEET--C--GGGG---GGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred -----c-----------------ccCCCCEEEEEEec--c--hhhc---cCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 0 00124799999832 1 0000 0000 11589999999999999999988654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.06 E-value=2.1e-05 Score=80.97 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIK 603 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~ 603 (772)
.+.+||.||+|+|.+...+....|..+|++||+++.+++.|++.. ++ .++++++.+|+.+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~ 127 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQKT 127 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC--CccEEEEEcchhh
Confidence 457899999999998888887777789999999999999999887 43 4579999999765
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.2e-05 Score=82.61 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=74.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEc-CHHHHHHHHHhc-----CCCC-C----CCeEEEEcc---HHHHH-H
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVEL-DLTMLNLAEDYF-----GFTQ-D----KSLKVHITD---GIKFV-R 606 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEi-Dp~v~~vA~~~F-----g~~~-~----~rl~v~i~D---g~~~l-~ 606 (772)
...+||.||+|+|.++..+.... ..+|++||+ ++.+++.|++.. .... + ++++++..| ...-+ .
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 45689999999999998888763 348999999 999999999887 2111 1 467877443 22222 1
Q ss_pred hhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccC---C
Q 004133 607 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALS---E 682 (772)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~---~ 682 (772)
... ..+||+|+. |+.-.. + .-..+++.+++.|+ |
T Consensus 158 ~~~-------------------------------~~~fD~Ii~~dvl~~~---------~--~~~~ll~~l~~~Lk~~~p 195 (281)
T 3bzb_A 158 CTG-------------------------------LQRFQVVLLADLLSFH---------Q--AHDALLRSVKMLLALPAN 195 (281)
T ss_dssp HHS-------------------------------CSSBSEEEEESCCSCG---------G--GHHHHHHHHHHHBCCTTT
T ss_pred hcc-------------------------------CCCCCEEEEeCcccCh---------H--HHHHHHHHHHHHhcccCC
Confidence 111 257999987 442210 0 13789999999999 9
Q ss_pred --CcEEEEEecCC
Q 004133 683 --QGLFIVNLVSR 693 (772)
Q Consensus 683 --~Gilv~Nl~~~ 693 (772)
||.+++-+..+
T Consensus 196 ~~gG~l~v~~~~~ 208 (281)
T 3bzb_A 196 DPTAVALVTFTHH 208 (281)
T ss_dssp CTTCEEEEEECC-
T ss_pred CCCCEEEEEEEee
Confidence 99877655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 772 | ||||
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 4e-08 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 1e-06 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-06 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-06 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 1e-05 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 2e-05 | |
| d2b2ca1 | 312 | c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab | 2e-05 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-05 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 5e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 1e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 1e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 1e-04 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 2e-04 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 3e-04 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 6e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.001 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.002 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.003 |
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.4 bits (127), Expect = 4e-08
Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 25/226 (11%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
D + W + IGD+ AE+ + L+ L+ ++L CG S
Sbjct: 23 DGEAARVWQLY-----IGDTRSRTAEY---KAWLLGLLRQH---GCHRVLDVACGTGVDS 71
Query: 84 EHLYDAGFH---GITNVDFSKVVISDMLRRNVRDRSDM----RWRVMDMTSMQVFMDETF 136
L + GF + K + + R D + + D
Sbjct: 72 IMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131
Query: 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFG 196
VI L + + L + +++ GG V ++L G
Sbjct: 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYIL-------STG 184
Query: 197 WKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLD 242
I KS + T ++ + + V L T + D
Sbjct: 185 CAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRD 230
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 29/172 (16%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
+ E W + F L+ L + + ++ P CG + +
Sbjct: 9 TLEEWQDKWVNGKTA--FHQEQGHQLLKKHLDTFLKGK---SGLRVFFPLCGKAVEMKWF 63
Query: 87 YDAGFHGITNVDFSKVVISDMLRRN------------------VRDRSDMRWRVMDMTSM 128
D G + V+ S++ I + ++ + +
Sbjct: 64 ADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122
Query: 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
FD+I D+G L A+ Y + LL +++ L
Sbjct: 123 PRTNIGKFDMIWDRGALVAIN-----PGDRKCYADTMFSLLGKKFQYLLCVL 169
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 46.5 bits (109), Expect = 2e-06
Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 8/154 (5%)
Query: 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104
++ E L ++ A P + L GCGN R S +L G+
Sbjct: 7 NYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWD--KNPAS 64
Query: 105 SDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSE 164
L R + + + D +D IL + L + ++
Sbjct: 65 MANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTI-----PGLIAN 119
Query: 165 VKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 198
++R K GG + + ++ F F +K
Sbjct: 120 MQRCTKPGGYNLIVAAMDTPDFPCTVG-FPFAFK 152
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 46.5 bits (109), Expect = 4e-06
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 8/112 (7%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126
++L G G + VD +K ++ +
Sbjct: 15 RAEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 73
Query: 127 SMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178
F D++FD+I + + + + EV R+LK G+F+ +
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHFSDVR-------KAVREVARVLKQDGRFLLV 118
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 20/139 (14%)
Query: 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHG-ITNVDFSKV 102
F + LRD +++ + +L GCG + DA +D
Sbjct: 60 FLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV--- 116
Query: 103 VISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYL 162
S + + R + + F D + D I+
Sbjct: 117 --SKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP--------------CKA 160
Query: 163 SEVKRLLKSGGKFVCLTLA 181
E+ R++K GG + T
Sbjct: 161 EELARVVKPGGWVITATPG 179
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN--------VRDRSDMR 119
P ++LVP CG S+ L G+H + + S+ + D
Sbjct: 20 PGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYA 78
Query: 120 WRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
+++ F D+ D L + +Y+ ++ L+ +
Sbjct: 79 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.7 bits (105), Expect = 2e-05
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DKSLKVHITD 600
+ ++IG G G + + + + E+D ++++A+ + L + D
Sbjct: 109 RVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD 168
Query: 601 GIKFVREMKSS 611
G +F++ K+
Sbjct: 169 GFEFLKNHKNE 179
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 7/109 (6%)
Query: 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127
P +IL G G+ + T +D S + + RR R + +
Sbjct: 33 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 92
Query: 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176
+E DV G + + LK GG +
Sbjct: 93 AGYVANEKCDVAACVGATWIAGGFA-------GAEELLAQSLKPGGIML 134
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 43.4 bits (101), Expect = 5e-05
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 72 ILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQ 129
+L GCG AG VD ++V I+D R N++ R + +R D
Sbjct: 28 VLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH 87
Query: 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186
+ + + FDVI + + R L+ GG F+ + +L
Sbjct: 88 MDLGKEFDVISSQFSFHYAFSTSESLD---IAQRNIARHLRPGGYFIMTVPSRDVIL 141
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 67 SPPPQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124
+ P I+ GCG L L G T +D + ++++ D + D
Sbjct: 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 85
Query: 125 MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179
T ++ D+ I L + PE L ++ +K GGK +C
Sbjct: 86 ATEIE-LNDKYDIAICH-AFLLHMTTPE-------TMLQKMIHSVKKGGKIICFE 131
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 37/189 (19%), Positives = 63/189 (33%), Gaps = 12/189 (6%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
+ + + F +S E+ + L L+ + ++L CG S L D
Sbjct: 3 KEYYRVFPTYTDINSQEYRSRIETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLED 57
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148
GF + + R + R ++ F D+TFD ++ +
Sbjct: 58 YGFEVVGV--DISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115
Query: 149 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 208
EL NQ EV+R+LK GKF+ +L L G K + +
Sbjct: 116 EPLEL-----NQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQ 170
Query: 209 SSEPSLQTF 217
+ F
Sbjct: 171 EERTVVIEF 179
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 3/128 (2%)
Query: 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113
P + + A SS ++L G G + + + +A ++ + V + R
Sbjct: 39 ETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR 98
Query: 114 DRSDMRWRVMDMTSMQVFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG 172
+ + + FD IL + N + RLLK G
Sbjct: 99 QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQF--NFIKNHAFRLLKPG 156
Query: 173 GKFVCLTL 180
G L
Sbjct: 157 GVLTYCNL 164
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 29/252 (11%), Positives = 59/252 (23%), Gaps = 58/252 (23%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
F ++ +++ G ++ + L P ++ G G +
Sbjct: 10 HFLPRDYLATYYSFDGSPSPEAEMLKF--NLECLHKTF-GPGGLQGDTLIDIGSGPTIYQ 66
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV------------- 130
F IT DF+ ++ + ++ W + ++
Sbjct: 67 VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126
Query: 131 ---------------------FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 169
+ D +L ++ ++ L + LL
Sbjct: 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR---AALCNLASLL 183
Query: 170 KSGGKFVCLTLAESH---VLGLLFPKFRFGWK-------------MSVHAIPQKSSSEPS 213
K GG V V F + PQ S +
Sbjct: 184 KPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNA 243
Query: 214 LQT--FMVVADK 223
+VA K
Sbjct: 244 ANNGVCCIVARK 255
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 35/196 (17%)
Query: 10 SSSSSATDLLQTLGDFTSK------ENWDKFFTIRGIGDSFEWYAE-------------- 49
S +S+ +L + D K E W T WY +
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSG 66
Query: 50 ----WPQLRDPLIS----LIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101
+ D I I + + L G G R++++L + ++ K
Sbjct: 67 VLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVK 126
Query: 102 VVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQY 161
++ + +R + ++ + M + T+D+I+ + L + + +
Sbjct: 127 HML-EEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTAIYLTDADFVK-----F 179
Query: 162 LSEVKRLLKSGGKFVC 177
++ L G
Sbjct: 180 FKHCQQALTPNGYIFF 195
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 6e-04
Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQDKSLKVHITD 600
K ++IG G G + + + + E+D ++ +++ + L +H+ D
Sbjct: 81 KVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD 140
Query: 601 GIKFVREMKSS 611
G +F+++ + +
Sbjct: 141 GFEFMKQNQDA 151
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 0.001
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 23/144 (15%)
Query: 66 SSPPPQILVPGCGNSRLSEHLYDAGFHG-------ITNVDFSKVVISDMLRRNVRDRSDM 118
+ +IL G G + + V+ S I+ + +
Sbjct: 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE 97
Query: 119 RWRVMDMTSM---------QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 169
+ + + +D I L + + K LL
Sbjct: 98 NVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLK-------FFHSLL 150
Query: 170 KSGGKFVCLTLAESHVLGLLFPKF 193
+ K + + ++ S L+ K+
Sbjct: 151 GTNAKMLIIVVSGSSGWDKLWKKY 174
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 0.002
Identities = 22/197 (11%), Positives = 47/197 (23%), Gaps = 41/197 (20%)
Query: 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS 83
F + + + ++ A ++ G G +
Sbjct: 12 RFEPRAYLRNNY--APPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQ 69
Query: 84 EHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-------------------- 123
+ F IT DF +V ++ R + W +
Sbjct: 70 LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129
Query: 124 -----------DMTS-----MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR 167
D+ D ++ L+A+ + + L +
Sbjct: 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQ---RALDHITT 186
Query: 168 LLKSGGKFVCLTLAESH 184
LL+ GG + + E
Sbjct: 187 LLRPGGHLLLIGALEES 203
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.8 bits (86), Expect = 0.003
Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 15/148 (10%)
Query: 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD 88
E +D + E + + ++L CG + L +
Sbjct: 10 EYYDTIYR-----RRIERVKAEIDFVEEIFKEDAKR---EVRRVLDLACGTGIPTLELAE 61
Query: 89 AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148
G+ + + V R + ++ F D +
Sbjct: 62 RGYEVVG-------LDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFS 114
Query: 149 MEPELGHKLGNQYLSEVKRLLKSGGKFV 176
+ + S+V LK GG F+
Sbjct: 115 TIMYFDEEDLRKLFSKVAEALKPGGVFI 142
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 772 | |||
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 99.93 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.92 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.92 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 99.92 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.91 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.91 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 99.91 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.77 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.74 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.71 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.71 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.7 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.68 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.68 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.67 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.67 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.66 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.64 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.63 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.61 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.6 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.59 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.58 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.58 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.56 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.53 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.52 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.48 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.48 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.48 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.45 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.43 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.42 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.4 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.39 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.33 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.33 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.32 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.31 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.3 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.3 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.25 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.24 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.21 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.21 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.2 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.19 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.17 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.16 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.12 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.09 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.08 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.07 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.05 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.05 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.04 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.01 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.0 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.96 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.96 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.95 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.94 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.92 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.9 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.9 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.9 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.89 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.86 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.85 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.84 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.81 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.81 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.8 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.78 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.77 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.77 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.74 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.74 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.73 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.72 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.72 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.69 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.67 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.67 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.67 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.65 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.65 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.64 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.63 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.63 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.62 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.62 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.62 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.6 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.59 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.59 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.58 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.55 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.55 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.54 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.54 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.53 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.53 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.52 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.51 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.51 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.51 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.51 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.48 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.48 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.48 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.46 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.45 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.44 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.43 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.43 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.42 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.38 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.36 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.34 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.33 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.32 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.32 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.32 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.3 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.28 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.28 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.27 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.26 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.26 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.25 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.24 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.24 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.24 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.23 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.2 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.2 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.18 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.18 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.17 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.16 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.16 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.15 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.08 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.07 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.07 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.03 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.01 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.01 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.0 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.95 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.92 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.9 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.86 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.81 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.78 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.78 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.77 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.7 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.56 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.56 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.46 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.45 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.44 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.44 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.4 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.4 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.39 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.39 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.37 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.37 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.34 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.25 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.24 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.21 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.14 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.0 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 96.99 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 96.95 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.94 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.92 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.9 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.88 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.85 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.79 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.58 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.58 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.44 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.42 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.41 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.33 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.32 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.27 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.27 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.16 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.07 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.94 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 95.91 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 95.86 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.85 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.73 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.46 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.42 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.41 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.3 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.25 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.21 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.07 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.0 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.93 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.92 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.85 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.54 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.51 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.49 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.98 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.95 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.86 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 93.77 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.69 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.69 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.58 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.52 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.88 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 92.72 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.71 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.06 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 91.9 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.78 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.62 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.61 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.51 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.11 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.88 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.6 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.36 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.9 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 89.66 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.42 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.39 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.06 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 88.51 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.42 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.31 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 88.18 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 88.08 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 88.05 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 87.86 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 87.67 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 87.38 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.1 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 87.1 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.98 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.73 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 86.61 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 86.38 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 86.21 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 85.91 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 85.55 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 85.32 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.12 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.12 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.76 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 84.75 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.43 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 84.06 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 84.06 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 83.73 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.72 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.69 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 83.16 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.15 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 83.03 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 82.96 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 82.85 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 82.77 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.58 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 82.53 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 82.46 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 82.15 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 81.66 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 81.56 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 81.54 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 81.29 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 81.07 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.81 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 80.05 |
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.8e-25 Score=230.03 Aligned_cols=168 Identities=18% Similarity=0.267 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc----CCCCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F----g~~~~~ 592 (772)
..||. |++++++..+ +.|++|||||+|+|++++.+.++.+..+|++|||||.|+++|++|| +..+++
T Consensus 62 ~~Yhe-~l~h~~l~~~--------~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~ 132 (285)
T d2o07a1 62 FSYQE-MIANLPLCSH--------PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS 132 (285)
T ss_dssp HHHHH-HHHHHHHTTS--------SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCT
T ss_pred HHHHH-HhccHhhhhC--------cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCC
Confidence 56886 4555666554 7889999999999999999999988889999999999999999999 334689
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++||++||++.. .+||+||+|+.++.. |+..+++.+|
T Consensus 133 rv~i~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~~p~~------~~~~L~t~eF 174 (285)
T d2o07a1 133 KLTLHVGDGFEFMKQNQ--------------------------------DAFDVIITDSSDPMG------PAESLFKESY 174 (285)
T ss_dssp TEEEEESCHHHHHHTCS--------------------------------SCEEEEEEECC-----------------CHH
T ss_pred CceEEEccHHHHHhcCC--------------------------------CCCCEEEEcCCCCCC------cccccccHHH
Confidence 99999999999998743 679999999976531 5789999999
Q ss_pred HHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ecC---CceEEEEEecCC
Q 004133 673 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSE 731 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~vl~a~~~~ 731 (772)
++.++++|+|+|++++|..+. .......+.++++++|+++..+. ++. +...+++|++.+
T Consensus 175 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~~~~g~w~f~~aSk~p 240 (285)
T d2o07a1 175 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKNP 240 (285)
T ss_dssp HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred HHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeEEeeeeeecCCCCeEEEEEECCc
Confidence 999999999999999998664 45667788999999999976654 332 234678898875
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=8.4e-24 Score=221.33 Aligned_cols=170 Identities=22% Similarity=0.331 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-------
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 589 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------- 589 (772)
..||..|+. +++..+ +++++||+||+|+|+++..+.++ +..+|++|||||.|+++|++||++.
T Consensus 56 ~~Yhe~l~~-~~l~~~--------~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~ 125 (276)
T d1mjfa_ 56 RSYHEPLVH-PAMLAH--------PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125 (276)
T ss_dssp HHHHHHHHH-HHHHHS--------SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHH
T ss_pred hHHHHHhhc-chhhcC--------CCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhh
Confidence 569998764 344443 78899999999999998888776 4469999999999999999999764
Q ss_pred ---CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC
Q 004133 590 ---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD 666 (772)
Q Consensus 590 ---~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~ 666 (772)
.++|++++++||++|+++. ++||+||+|+..+. .|+..
T Consensus 126 ~~~~d~rv~i~~~Da~~~l~~~---------------------------------~~yDvIi~D~~~~~------~~~~~ 166 (276)
T d1mjfa_ 126 LNGKHEKAKLTIGDGFEFIKNN---------------------------------RGFDVIIADSTDPV------GPAKV 166 (276)
T ss_dssp HTTCCSSEEEEESCHHHHHHHC---------------------------------CCEEEEEEECCCCC-----------
T ss_pred hccCCCCceEEEChHHHHHhcc---------------------------------CCCCEEEEeCCCCC------CCccc
Confidence 4799999999999999752 56999999997653 15789
Q ss_pred CCcHHHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--c--CCceEEEEEecCCCcCC
Q 004133 667 FVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSESCIK 735 (772)
Q Consensus 667 f~~~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~vl~a~~~~~~~~ 735 (772)
|++.+|++.++++|+|+|++++|..+. .......++++|+++|++|+.+.+ + .+....++|++.+....
T Consensus 167 L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as~~~~~~~ 241 (276)
T d1mjfa_ 167 LFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKGDIDFT 241 (276)
T ss_dssp TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEESSCCTT
T ss_pred ccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEeCCCCChh
Confidence 999999999999999999999998554 345567788999999999888764 2 23456788887765443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=5.7e-24 Score=226.04 Aligned_cols=186 Identities=16% Similarity=0.191 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 591 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~~~ 591 (772)
..||..|+. +++..+ +++++||+||+|+|++++.+.++.|..+|++|||||+|+++|++|| +..++
T Consensus 61 ~~Yhe~l~h-~~l~~~--------~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d 131 (312)
T d1uira_ 61 YIYHETLVH-PAMLTH--------PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD 131 (312)
T ss_dssp HHHHHHHHH-HHHHHS--------SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred HHHHHHHhh-hhhhhC--------CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCC
Confidence 568887664 555554 7889999999999999999999888889999999999999999999 33478
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+|++++++||++||++.. .+||+||+|+..+- +...|+..|++.+
T Consensus 132 ~rv~i~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~dp~---~~~~~~~~L~t~e 176 (312)
T d1uira_ 132 PRAVLVIDDARAYLERTE--------------------------------ERYDVVIIDLTDPV---GEDNPARLLYTVE 176 (312)
T ss_dssp TTEEEEESCHHHHHHHCC--------------------------------CCEEEEEEECCCCB---STTCGGGGGSSHH
T ss_pred CceEEEEchHHHHhhhcC--------------------------------CcccEEEEeCCCcc---cccchhhhhhhHH
Confidence 999999999999998753 67999999986542 2234678899999
Q ss_pred HHHHHHHccCCCcEEEEEecCC---ChhHHHHHHHHHHHhccceEEEee--cC--CceEEEEEecCCC--cCCCCcHHHH
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR---SQATKDMVISRMKMVFNHLFCLQL--EE--DVNLVLFGLSSES--CIKDNSFPEA 742 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~---~~~~~~~v~~~l~~vF~~v~~~~~--~~--~~N~vl~a~~~~~--~~~~~~l~~~ 742 (772)
|++.++++|+|||++++|+.+. .......+.++++++|+++..+.. +. .....++|++... .+....+..+
T Consensus 177 F~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~~~~p~~~~~~~~~~~ 256 (312)
T d1uira_ 177 FYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEAR 256 (312)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEESSSCTTCCCTTHHHHH
T ss_pred HHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCCCEeEEEeCCCCccccChhhhhhh
Confidence 9999999999999999998543 345667778999999999877653 22 2345788887753 3344445665
Q ss_pred HHHH
Q 004133 743 AVQL 746 (772)
Q Consensus 743 a~~l 746 (772)
.+..
T Consensus 257 ~~~~ 260 (312)
T d1uira_ 257 IRER 260 (312)
T ss_dssp HHHT
T ss_pred Hhhc
Confidence 5553
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=5.5e-24 Score=223.75 Aligned_cols=169 Identities=21% Similarity=0.332 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC----CCCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg----~~~~~ 592 (772)
+.||..| +++++..+ ++|++||+||+|+|++++.+.++.|..+|++|||||+|+++|++||. ..+++
T Consensus 64 ~~Yhe~l-~h~~~~~~--------~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~ 134 (290)
T d1xj5a_ 64 CAYQEMI-THLPLCSI--------PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDP 134 (290)
T ss_dssp HHHHHHH-HHHHHTTS--------SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGST
T ss_pred hHHHHHH-hhHHHhhC--------CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCC
Confidence 5688654 45555554 78899999999999999999999887799999999999999999993 23689
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++||++|+++.. ..+||+||+|++++. + |+..|++.+|
T Consensus 135 r~~i~~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~---~---~~~~L~t~eF 177 (290)
T d1xj5a_ 135 RVNLVIGDGVAFLKNAA-------------------------------EGSYDAVIVDSSDPI---G---PAKELFEKPF 177 (290)
T ss_dssp TEEEEESCHHHHHHTSC-------------------------------TTCEEEEEECCCCTT---S---GGGGGGSHHH
T ss_pred CcEEEEccHHHHHhhcc-------------------------------ccCccEEEEcCCCCC---C---cchhhCCHHH
Confidence 99999999999998754 358999999987653 2 5789999999
Q ss_pred HHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEE---eecC---CceEEEEEecCC
Q 004133 673 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCL---QLEE---DVNLVLFGLSSE 731 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~---~~~~---~~N~vl~a~~~~ 731 (772)
++.++++|+|+|++++|+.+. +......++++++++|+++..+ .++. +....++|++..
T Consensus 178 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as~~~ 244 (290)
T d1xj5a_ 178 FQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEG 244 (290)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEECSS
T ss_pred HHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEeCCC
Confidence 999999999999999998765 4566778899999999986543 2443 234567777654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=1.1e-23 Score=219.77 Aligned_cols=172 Identities=17% Similarity=0.308 Sum_probs=141.6
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc----CCCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F----g~~~~ 591 (772)
...||. |++.+++..+ ++|++||+||+|+|+++..+.++.+..+|++|||||+|+++|++|| +..++
T Consensus 58 e~~Yhe-~l~h~~l~~~--------~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d 128 (274)
T d1iy9a_ 58 EFVYHE-MVAHVPLFTH--------PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDD 128 (274)
T ss_dssp HHHHHH-HHHHHHHHHS--------SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTS
T ss_pred hhhchh-hhccchhhcc--------CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccC
Confidence 355887 5555566554 7889999999999999999999988789999999999999999999 44579
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+|++++++||++||++.. .+||+||+|+..+. + |+..|++.+
T Consensus 129 ~r~~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~p~---~---~~~~L~t~e 170 (274)
T d1iy9a_ 129 PRVDVQVDDGFMHIAKSE--------------------------------NQYDVIMVDSTEPV---G---PAVNLFTKG 170 (274)
T ss_dssp TTEEEEESCSHHHHHTCC--------------------------------SCEEEEEESCSSCC---S---CCCCCSTTH
T ss_pred CCeEEEechHHHHHhhcC--------------------------------CCCCEEEEcCCCCC---C---cchhhccHH
Confidence 999999999999998753 67999999987653 2 467899999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--c---CCceEEEEEecCCCcC
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E---EDVNLVLFGLSSESCI 734 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~---~~~N~vl~a~~~~~~~ 734 (772)
|++.++++|+|+|++++|..+. .......++++|+++|+++..+.. + .+....++|++...+.
T Consensus 171 Fy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS~~~~p~ 240 (274)
T d1iy9a_ 171 FYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKKYDPL 240 (274)
T ss_dssp HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEESSCCTT
T ss_pred HHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEcCCCCcc
Confidence 9999999999999999998654 456667899999999999776653 3 3345677788765433
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=7.2e-24 Score=222.71 Aligned_cols=189 Identities=21% Similarity=0.274 Sum_probs=144.7
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~ 591 (772)
.+.||. |++++++..+ ++|++|||||+|+|++++.+.++.|..+|++|||||.|+++|++||.. -+|
T Consensus 72 e~~YhE-~l~h~pl~~~--------~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d 142 (295)
T d1inla_ 72 EFMYHE-MLAHVPMFLH--------PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDD 142 (295)
T ss_dssp HHHHHH-HHHHHHHHHS--------SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGC
T ss_pred hhhhhh-hhcchhHhhC--------CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccC
Confidence 366887 4556666655 789999999999999999999998888999999999999999999943 268
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+|++++++||++||++.. .+||+||+|+..+.. .|+..|++.+
T Consensus 143 ~rv~v~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~dp~~-----~~~~~L~t~e 185 (295)
T d1inla_ 143 PRAEIVIANGAEYVRKFK--------------------------------NEFDVIIIDSTDPTA-----GQGGHLFTEE 185 (295)
T ss_dssp TTEEEEESCHHHHGGGCS--------------------------------SCEEEEEEEC---------------CCSHH
T ss_pred CCcEEEhhhHHHHHhcCC--------------------------------CCCCEEEEcCCCCCc-----CchhhhccHH
Confidence 999999999999998753 679999999876532 2567899999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ecC---CceEEEEEecCCCcCCCCcHHHHHH
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE---DVNLVLFGLSSESCIKDNSFPEAAV 744 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~---~~N~vl~a~~~~~~~~~~~l~~~a~ 744 (772)
|++.++++|+|+|++++|..+. +......+.++++++|+++..+. ++. +....++|++...+...- ..++++
T Consensus 186 fy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~~p~~~~-~~~~~~ 264 (295)
T d1inla_ 186 FYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGIDPIKDF-DPEKVR 264 (295)
T ss_dssp HHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEEESSCCTTTTC-CHHHHH
T ss_pred HHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEeeeceecCcccEEEEEeCCCCccccc-CHHHHh
Confidence 9999999999999999998764 45667888999999999876654 232 345688888876543332 355666
Q ss_pred HHhhhcC
Q 004133 745 QLGKLVK 751 (772)
Q Consensus 745 ~l~~~~~ 751 (772)
.+...++
T Consensus 265 ~~~~~l~ 271 (295)
T d1inla_ 265 KFNKELK 271 (295)
T ss_dssp TCSSCCS
T ss_pred hccCCCe
Confidence 5554444
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.91 E-value=1.5e-23 Score=221.03 Aligned_cols=168 Identities=18% Similarity=0.272 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~~ 592 (772)
..||. |++++++..+ ++|++|||||+|+|++++.+.++.|..+|++|||||.|+++|++||.. .+++
T Consensus 90 ~~YhE-~l~h~pl~~~--------~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dp 160 (312)
T d2b2ca1 90 FSYQE-MLAHLPMFAH--------PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 160 (312)
T ss_dssp SHHHH-HHHHHHHHHS--------SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCT
T ss_pred HHHHH-HhhhHHHhcC--------CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCC
Confidence 45886 4555566554 788999999999999999999988877999999999999999999953 2579
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++||++||++.. .+||+||+|+..+. .|+..|++.+|
T Consensus 161 rv~i~i~Da~~~l~~~~--------------------------------~~yDvII~D~~dp~------~~~~~L~t~eF 202 (312)
T d2b2ca1 161 KLDLFCGDGFEFLKNHK--------------------------------NEFDVIITDSSDPV------GPAESLFGQSY 202 (312)
T ss_dssp TEEEECSCHHHHHHHCT--------------------------------TCEEEEEECCC-------------------H
T ss_pred CeEEEEchHHHHHHhCC--------------------------------CCCCEEEEcCCCCC------CcchhhhhHHH
Confidence 99999999999998743 67999999987552 15788999999
Q ss_pred HHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--cC---CceEEEEEecCC
Q 004133 673 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSSE 731 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~vl~a~~~~ 731 (772)
++.++++|+|+|++++|..+. .......++++++++|+++..+.. +. +....++|++..
T Consensus 203 y~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~ 268 (312)
T d2b2ca1 203 YELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICAKNA 268 (312)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEESST
T ss_pred HHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceeeEEECCC
Confidence 999999999999999997554 455667889999999998776653 32 234478888764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=5e-19 Score=179.81 Aligned_cols=145 Identities=17% Similarity=0.275 Sum_probs=120.5
Q ss_pred CHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~ 106 (772)
+.++|+++|++.. ..+.+....+.+...+.+++.. .++.+|||+|||+|..+..|++.|+ +|||||+|+.+|+.
T Consensus 9 ~~e~W~~~~~~~~--~~w~~~~~~~~l~~~~~~~l~~---~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~ 82 (229)
T d2bzga1 9 TLEEWQDKWVNGK--TAFHQEQGHQLLKKHLDTFLKG---KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQE 82 (229)
T ss_dssp CHHHHHHHHHHTC--CTTCCTTCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred CHHHHHHHHccCC--CCCccCCCCHHHHHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence 4689999998774 2344444566777777777765 5788999999999999999999999 69999999999999
Q ss_pred HHHHhcc------------------CCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhc
Q 004133 107 MLRRNVR------------------DRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRL 168 (772)
Q Consensus 107 a~~~~~~------------------~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rv 168 (772)
|++++.. ...+++|.++|+.+++....+.||+|++.++++++..+. +..+++++.++
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~-----r~~~~~~~~~~ 157 (229)
T d2bzga1 83 FFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD-----RKCYADTMFSL 157 (229)
T ss_dssp HHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG-----HHHHHHHHHHT
T ss_pred HHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh-----hHHHHHHHHhh
Confidence 9887632 224789999999998646678999999999999997654 78999999999
Q ss_pred cccCeEEEEEEcCc
Q 004133 169 LKSGGKFVCLTLAE 182 (772)
Q Consensus 169 LkpGG~~ii~~~~~ 182 (772)
|||||++++.++..
T Consensus 158 LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 158 LGKKFQYLLCVLSY 171 (229)
T ss_dssp EEEEEEEEEEEEEC
T ss_pred cCCcceEEEEEccc
Confidence 99999998887654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=9.7e-19 Score=175.51 Aligned_cols=121 Identities=27% Similarity=0.363 Sum_probs=104.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+.+.+.+++ +++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|++++......+.++++|+.+++
T Consensus 25 ~~~~~~~~~~l-----~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~- 97 (226)
T d1ve3a1 25 ETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS- 97 (226)
T ss_dssp HHHHHHHHHSC-----CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-
T ss_pred HHHHHHHHHhc-----CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccccccccccccccc-
Confidence 34455566666 3578999999999999999999876 6999999999999999888777778999999999999
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++++||+|++..+++|+.+.+ ..++|+++.++|||||++++.....+
T Consensus 98 ~~~~~fD~I~~~~~l~~~~~~d-----~~~~l~~i~~~LkpgG~lii~~~~~~ 145 (226)
T d1ve3a1 98 FEDKTFDYVIFIDSIVHFEPLE-----LNQVFKEVRRVLKPSGKFIMYFTDLR 145 (226)
T ss_dssp SCTTCEEEEEEESCGGGCCHHH-----HHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred ccCcCceEEEEecchhhCChhH-----HHHHHHHHHHHcCcCcEEEEEEcCch
Confidence 9999999999999999985433 67899999999999999988765433
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=5.2e-18 Score=172.40 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=104.3
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVF 131 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~ 131 (772)
...++.+.++. +|+.+|||+|||+|.++..|++.+. +|+|+|+|+.|++.|++++...+ +++.|+++|+.+++ +
T Consensus 4 ~~~~l~~~~~~---~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~ 78 (234)
T d1xxla_ 4 SLGLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-F 78 (234)
T ss_dssp HHHHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-S
T ss_pred HHHHHHHHhCC---CCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccccccccccccccc-c
Confidence 44556677766 7999999999999999999999875 79999999999999988875443 57999999999999 9
Q ss_pred cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++++||+|++.++++++.+ ...+++++.|+|||||++++.++..+
T Consensus 79 ~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 79 PDDSFDIITCRYAAHHFSD-------VRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp CTTCEEEEEEESCGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred cccccceeeeeceeecccC-------HHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 9999999999999999866 46999999999999999999876543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=1.7e-17 Score=169.66 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a 107 (772)
.+||+..|.... ..+......+..++......+..+|||+|||+|.++..|++.|+ +|+|||+|+.||+.|
T Consensus 9 a~~Yd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a 79 (251)
T d1wzna1 9 AEYYDTIYRRRI--------ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVA 79 (251)
T ss_dssp GGGHHHHTHHHH--------HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred HHHHHHHHHhhh--------hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccc
Confidence 467888776541 11122223333333322225678999999999999999999987 799999999999999
Q ss_pred HHHhccCCCCcEEEEeeccCcccccCCCccEEEec-ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 108 LRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 108 ~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~-~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++....+.+++|.++|+++++ ++ ++||+|++. +++.++..++ ..++|++++++|||||++++...
T Consensus 80 ~~~~~~~~~~i~~~~~d~~~l~-~~-~~fD~I~~~~~~~~~~~~~~-----~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 80 RRKAKERNLKIEFLQGDVLEIA-FK-NEFDAVTMFFSTIMYFDEED-----LRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp HHHHHHTTCCCEEEESCGGGCC-CC-SCEEEEEECSSGGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchheehhhhhcc-cc-cccchHhhhhhhhhcCChHH-----HHHHHHHHHHHcCCCcEEEEEec
Confidence 9998777778999999999998 66 689999986 4666663322 67999999999999999988643
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.71 E-value=2.1e-17 Score=166.86 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=96.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~-~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
+++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++... ..++++|.++|+.+++ +++++||+|++..++
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~~~~~l 91 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAA 91 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCG
T ss_pred CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccc-ccccccccccccccc
Confidence 6789999999999999999999875 799999999999999887654 3468999999999999 999999999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.+ ..+++++++|+|||||++++.++..
T Consensus 92 ~~~~d-------~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 92 HHFPN-------PASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp GGCSC-------HHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred cccCC-------HHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99976 4689999999999999999987654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.70 E-value=3.8e-17 Score=159.86 Aligned_cols=111 Identities=16% Similarity=0.264 Sum_probs=95.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC-------------CCCcEEEEeeccCcccccC
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-------------RSDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~-------------~~~v~f~~~D~~~l~~~~~ 133 (772)
.|+.+|||+|||+|+++..|+++|+ +|||+|+|+.||+.|++++... ...+.|.++|+.+++....
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence 6889999999999999999999998 6999999999999999887432 3457899999999873456
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
..||+|++..+++++.... ...++++++++|||||++++..+...
T Consensus 98 ~~~D~i~~~~~l~~l~~~~-----~~~~~~~i~~~LkpgG~l~l~~~~~~ 142 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALPADM-----RERYVQHLEALMPQACSGLLITLEYD 142 (201)
T ss_dssp HSEEEEEEESCGGGSCHHH-----HHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred cceeEEEEEeeeEecchhh-----hHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 7899999999999986533 67999999999999999988776643
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.3e-17 Score=168.23 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=95.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..++..++.+|+|||+|+.||+.|++++... .++++|.++|+++++ +++++||+|++.+++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESCG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccc-ccccccccccccccc
Confidence 467899999999999999988776778999999999999999887543 346799999999999 889999999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+.+++ ..+++++++++|||||.+++.+..
T Consensus 138 ~h~~~~~-----~~~~l~~i~~~Lk~~G~~~i~~~~ 168 (222)
T d2ex4a1 138 GHLTDQH-----LAEFLRRCKGSLRPNGIIVIKDNM 168 (222)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccchhhh-----hhhHHHHHHHhcCCcceEEEEEcc
Confidence 9987643 678999999999999999987643
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=5.8e-17 Score=164.51 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEec-cccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDK-GGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~-~~l~ 146 (772)
++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.|+++.. ..++++|+.+++ +++++||+|++. .+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l~-~~~~~fD~ii~~~~~~~ 114 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLP-FPSGAFEAVLALGDVLS 114 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCC-SCTTCEEEEEECSSHHH
T ss_pred CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc-----cccccccccccc-cccccccceeeecchhh
Confidence 578999999999999999999987 69999999999999987652 247889999999 999999999985 5788
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+.+ ..++|+++.|+|||||++++.....
T Consensus 115 ~~~d-------~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 115 YVEN-------KDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp HCSC-------HHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred hhhh-------HHHHHHHHHhhcCcCcEEEEEECCH
Confidence 8866 4689999999999999999877543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=2.2e-16 Score=156.16 Aligned_cols=134 Identities=17% Similarity=0.301 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHH
Q 004133 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (772)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I 104 (772)
+.+..||.+.|.... .. .. +...++. ..+.+|||+|||+|.++..|+++|+ +|+|+|+|+.|+
T Consensus 3 ~~d~~~~~~~~~~~~------~~---~~----~~~~~~~---~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l 65 (198)
T d2i6ga1 3 VRDENYFTEKYGLTR------TH---SD----VLAAAKV---VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASM 65 (198)
T ss_dssp CCSHHHHHHHHCBCC------CC---HH----HHHHHTT---SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHH
T ss_pred cchHHHHhcccCCCC------CH---HH----HHHHccc---CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHH
Confidence 456778888775441 01 11 2222332 2456999999999999999999997 699999999999
Q ss_pred HHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 105 SDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 105 ~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+.++++....+ .++++.+.|+.+++ ++++||+|++..+++++..++ +.+++++++++|+|||++++.++..
T Consensus 66 ~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~~~~~~~~-----~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 66 ANLERIKAAEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVMMFLEAQT-----IPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp HHHHHHHHHTTCTTEEEEECCTTTCC--CCCCEEEEEEESCGGGSCTTH-----HHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred HHHHHHhhhccccchhhhheeccccc--ccccccEEEEeeeeecCCHHH-----HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99987765444 46899999999987 478999999999999986644 7899999999999999999887653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.67 E-value=2e-16 Score=161.61 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=100.4
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
|......+.+.+.... .++.+|||+|||+|.++..|++.|. +|+|+|+|+.||+.|+++....+.+++|+++|+.+++
T Consensus 20 y~~~~~~~~~~~~~~~-~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~ 97 (246)
T d1y8ca_ 20 YKKWSDFIIEKCVENN-LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN 97 (246)
T ss_dssp HHHHHHHHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC
T ss_pred HHHHHHHHHHHHHHhC-CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc
Confidence 3444455555554321 3467999999999999999999987 7999999999999999988777778999999999988
Q ss_pred cccCCCccEEEec-ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 130 VFMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 130 ~~~~~sfDvVi~~-~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+ +++||+|++. +++.++...++ +.++|++++++|||||.|++....
T Consensus 98 -~-~~~fD~i~~~~~~~~~~~~~~~----~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 98 -I-NRKFDLITCCLDSTNYIIDSDD----LKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp -C-SCCEEEEEECTTGGGGCCSHHH----HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred -c-cccccccceeeeeeeccCCHHH----HHHHHHHHHHhCCCCeEEEEEeCC
Confidence 4 5799999975 67777765432 788999999999999999875543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.66 E-value=3.7e-16 Score=163.16 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..|++. |. +|+|+|+|+.+++.++++....+ .+++|.++|+.+++ +++++||+|++..
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-~~~~sfD~V~~~~ 143 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQD 143 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEES
T ss_pred CCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccccccc-ccccccchhhccc
Confidence 67899999999999999999987 65 79999999999999988775433 47999999999999 9999999999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++|+.+ ..++|++++++|||||++++.++..
T Consensus 144 ~l~h~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 144 AFLHSPD-------KLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp CGGGCSC-------HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hhhhccC-------HHHHHHHHHHhcCCCcEEEEEEeec
Confidence 9999965 5689999999999999999887543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.64 E-value=4.7e-16 Score=159.73 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccc-cCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVF-MDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~-~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|..+..+++.|+.+|+|||+|+.||+.|++++.... .++.|.++|+...+ + .+++||+|++.+
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-MDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-CCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc-ccccccceEEEEcc
Confidence 3688999999999999999999888789999999999999998875433 46899999998776 4 577899999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
+++|+..++ .....+++++.++|||||+|++.+...+.+..
T Consensus 102 ~l~~~~~~~---~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~ 142 (252)
T d1ri5a_ 102 SFHYAFSTS---ESLDIAQRNIARHLRPGGYFIMTVPSRDVILE 142 (252)
T ss_dssp CGGGGGSSH---HHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred eeeecCCCH---HHHHHHHHHHhceeCCCCEEEEEecCHHHHHH
Confidence 999986542 23779999999999999999998876555443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.63 E-value=5e-16 Score=160.01 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.+..+|||+|||+|+++..|+..++.+|+++|+|+.||+.|++++. ..+.++|.++|+.+++ +++++||+|++.++++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~-~~~~~~~~~~d~~~~~-~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA-GMPVGKFILASMETAT-LPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT-TSSEEEEEESCGGGCC-CCSSCEEEEEEESCGG
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc-ccccceeEEccccccc-cCCCccceEEeecccc
Confidence 5678999999999999999887767789999999999999988763 4456899999999999 8899999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
|+.+++ ..++|++++++|||||++++.+.
T Consensus 170 hl~d~d-----~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 170 YLTDAD-----FVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GSCHHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhh-----hHHHHHHHHHhcCCCcEEEEEec
Confidence 997644 67899999999999999998754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=5.9e-16 Score=162.51 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=111.0
Q ss_pred chhcccccCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEE
Q 004133 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGIT 95 (772)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~ 95 (772)
+.+|..+.+-....+|+.++.... ... ......+...+.. .++.+|||+|||+|.++..|++.|+ +|+
T Consensus 15 ~~~~d~Y~d~~~~~~~~~~~~~~~--~r~------~~~~~~l~~~l~~---~~~~~vLD~GcG~G~~~~~la~~g~-~v~ 82 (292)
T d1xvaa_ 15 EGIPDQYADGEAARVWQLYIGDTR--SRT------AEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEGF-SVT 82 (292)
T ss_dssp TTSCCTTTTSHHHHHHHHHHHTTC--CBC------HHHHHHHHHHHHH---TTCCEEEESSCTTSHHHHHHHHTTC-EEE
T ss_pred cccchhhhcchHHHHHHHHhcchh--hhH------HHHHHHHHHHhhh---cCCCEEEEecCCCcHHHHHHHHcCC-eee
Confidence 445554443333568988776542 112 2334445566654 4567999999999999999999997 699
Q ss_pred EEeCCHHHHHHHHHHhccCCCC-----cEEEEeeccCcc--cccCCCccEEEec-ccccccccCccchHHHHHHHHHHHh
Q 004133 96 NVDFSKVVISDMLRRNVRDRSD-----MRWRVMDMTSMQ--VFMDETFDVILDK-GGLDALMEPELGHKLGNQYLSEVKR 167 (772)
Q Consensus 96 gvDiS~~~I~~a~~~~~~~~~~-----v~f~~~D~~~l~--~~~~~sfDvVi~~-~~l~~l~~~~~~~~~~~~~l~ei~r 167 (772)
|+|+|+.||+.|+++....... ..+..+|+..+. ....++||+|++. .++.|+.++.........+|+++++
T Consensus 83 gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (292)
T d1xvaa_ 83 SVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 162 (292)
T ss_dssp EEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHH
T ss_pred eccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHH
Confidence 9999999999998876544432 345555554322 1245789999875 4788887755444557899999999
Q ss_pred ccccCeEEEEEEcCchhh
Q 004133 168 LLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 168 vLkpGG~~ii~~~~~~~~ 185 (772)
+|||||+|++.....+.+
T Consensus 163 ~LkpgG~li~~~~~~~~~ 180 (292)
T d1xvaa_ 163 MVRPGGLLVIDHRNYDYI 180 (292)
T ss_dssp TEEEEEEEEEEEECHHHH
T ss_pred HcCcCcEEEEeecCHHHH
Confidence 999999999876654443
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.5e-15 Score=153.48 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=99.4
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l 128 (772)
.....+...+.. .|+.+|||||||+|.++..+++. |. .|+|||+|+.|++.++++....+ .+++|.++|+.++
T Consensus 20 ~~~~~l~~~~~l---~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 20 EKYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 344456666665 78999999999999999999886 54 79999999999999988875554 3599999999997
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
. ++++||+|++.++++++.+ ..+++++++|+|||||++++....
T Consensus 96 ~--~~~~fD~v~~~~~~~~~~d-------~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 96 V--ANEKCDVAACVGATWIAGG-------FAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp C--CSSCEEEEEEESCGGGTSS-------SHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred c--ccCceeEEEEEehhhccCC-------HHHHHHHHHHHcCcCcEEEEEecc
Confidence 5 6889999999999999976 468999999999999999987643
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.6e-15 Score=157.41 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=87.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..|++.+. ..++|+|+|+.|++.|+++. +++.|.++|+.+++ +++++||+|++..++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~----~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~ 157 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHRLP-FSDTSMDAIIRIYAP 157 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTSCS-BCTTCEEEEEEESCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc----ccccceeeehhhcc-CCCCCEEEEeecCCH
Confidence 3678999999999999999998843 47999999999999987654 57999999999999 999999999987665
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
++ +++++|+|||||++++.+.+..++.+
T Consensus 158 ~~--------------~~e~~rvLkpgG~l~~~~p~~~~l~e 185 (268)
T d1p91a_ 158 CK--------------AEELARVVKPGGWVITATPGPRHLME 185 (268)
T ss_dssp CC--------------HHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred HH--------------HHHHHHHhCCCcEEEEEeeCCcchHH
Confidence 44 36899999999999999988766543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9.3e-16 Score=157.08 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHH
Q 004133 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~ 103 (772)
.|...+||+.+|.... ..+........+...+.+.+.. ...++.+|||+|||+|.++..++..++.+|+|+|+|+.|
T Consensus 10 ~f~~~~Y~~~~Y~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~ 86 (257)
T d2a14a1 10 HFLPRDYLATYYSFDG--SPSPEAEMLKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 86 (257)
T ss_dssp HCCHHHHHHHHCCCCC--SCCHHHHHHHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHH
T ss_pred hcChHHHHHHHhCcCc--cccHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHH
Confidence 3666889999997652 1111111111223334444432 124577999999999999988887777789999999999
Q ss_pred HHHHHHHhccCCCCcE-------------------------------EEEeec----cCcccccCCCccEEEeccccccc
Q 004133 104 ISDMLRRNVRDRSDMR-------------------------------WRVMDM----TSMQVFMDETFDVILDKGGLDAL 148 (772)
Q Consensus 104 I~~a~~~~~~~~~~v~-------------------------------f~~~D~----~~l~~~~~~sfDvVi~~~~l~~l 148 (772)
|+.|+++......... ....+. ...+ +++++||+|++..+++++
T Consensus 87 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~ 165 (257)
T d2a14a1 87 REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAP-AVLPLADCVLTLLAMECA 165 (257)
T ss_dssp HHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTT-CCCCCEEEEEEESCHHHH
T ss_pred HHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhccccccccccccccc-ccCCcccEEeehhhHHHh
Confidence 9999888754332221 111111 1223 678899999999999998
Q ss_pred ccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 149 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 149 ~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.... .....++++++++|||||++++.++..
T Consensus 166 ~~~~---~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 166 CCSL---DAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp CSSH---HHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred cccH---HHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 6432 126789999999999999999987654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=1.8e-15 Score=150.18 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=87.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..+. .++|||+|+.|++.++++ ++++.++|+.+++ +++++||+|++..+|+|
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~-~~~~~fD~I~~~~~l~h 103 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLP-LKDESFDFALMVTTICF 103 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCC-SCTTCEEEEEEESCGGG
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc------ccccccccccccc-ccccccccccccccccc
Confidence 56799999999999998773 479999999999988754 5899999999999 99999999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
+.+ ..+++++++++|+|||++++.+......
T Consensus 104 ~~d-------~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 134 (208)
T d1vlma_ 104 VDD-------PERALKEAYRILKKGGYLIVGIVDRESF 134 (208)
T ss_dssp SSC-------HHHHHHHHHHHEEEEEEEEEEEECSSSH
T ss_pred ccc-------cccchhhhhhcCCCCceEEEEecCCcch
Confidence 965 4689999999999999999998765543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.56 E-value=8.3e-15 Score=147.53 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~---g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
.++.+|||+|||+|..+..|++. +..+|+|+|+|+.||+.|+++...... .+++.++|+.+++ .+.+|+|++
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~---~~~~d~i~~ 114 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---IKNASMVIL 114 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC---CCSEEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc---cccceeeEE
Confidence 47889999999999999999874 234799999999999999988754443 5666777776654 568899999
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+++++..++ ..++|++++|+|||||.+++.++.
T Consensus 115 ~~~l~~~~~~d-----~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 115 NFTLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp ESCGGGSCGGG-----HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeeccccChhh-----HHHHHHHHHHhCCCCceeeccccc
Confidence 99999986544 679999999999999999997654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.53 E-value=1.7e-14 Score=145.29 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=89.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
.+.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|+++.. .++.+.++|+.+++ + +++||+|++.++|+|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~-~-~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQ-L-PRRYDNIVLTHVLEH 93 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCC-C-SSCEEEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc---cccccccccccccc-c-ccccccccccceeEe
Confidence 467999999999999999998886 69999999999999987752 47999999999987 4 689999999999999
Q ss_pred cccCccchHHHHHHHHHHH-hccccCeEEEEEEcCch
Q 004133 148 LMEPELGHKLGNQYLSEVK-RLLKSGGKFVCLTLAES 183 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~-rvLkpGG~~ii~~~~~~ 183 (772)
+.+ ...++.++. ++|||||++++......
T Consensus 94 ~~d-------~~~~l~~i~~~~Lk~gG~l~i~~pn~~ 123 (225)
T d2p7ia1 94 IDD-------PVALLKRINDDWLAEGGRLFLVCPNAN 123 (225)
T ss_dssp CSS-------HHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred cCC-------HHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence 976 358899998 89999999999875433
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.52 E-value=3.4e-14 Score=148.17 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
..+.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++......+++|.++|+.+++ ++ ++||+|++.++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~~-~~fD~v~~~~~ 103 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LN-DKYDIAICHAF 103 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CS-SCEEEEEEESC
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc-cc-CCceEEEEehh
Confidence 45689999999999999999875 2 246999999999999999888666668999999999998 65 57999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++|+.+ ...++++++++|||||++++.+.
T Consensus 104 l~~~~d-------~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 104 LLHMTT-------PETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GGGCSS-------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhcCCC-------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 999976 35899999999999999999873
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.5e-14 Score=146.65 Aligned_cols=158 Identities=15% Similarity=0.105 Sum_probs=109.0
Q ss_pred hcccccCCCCHHHHHHHHHhcCCCCccccccch-hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEE
Q 004133 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEW-PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITN 96 (772)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~-~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~g 96 (772)
+-+....|...+||+.+|.... ..+.....+ ......+.+.+.. +...+.+|||+|||+|.++...+..++.+|+|
T Consensus 6 ~~~~~~~f~~~~Y~~~~y~~~~--~~~~~~~~~~~~~~~~~~~~f~~-g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~ 82 (263)
T d2g72a1 6 VASAYQRFEPRAYLRNNYAPPR--GDLCNPNGVGPWKLRCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSHFEDITM 82 (263)
T ss_dssp HHHHGGGCCHHHHHHHHHSTTT--TCCSSTTSHHHHHHHHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEE
T ss_pred HHHHHhhcCHHHHHHHHhCcCc--ccchhhhhhhhhHHHHHHHHcCC-CCCCCcEEEEeccCCCHHHHHHhcccCCeEEE
Confidence 4455677888999999997552 222222221 1223344454432 12457899999999998887666666668999
Q ss_pred EeCCHHHHHHHHHHhccCCCCc-------------------------------EEEEeeccCcc-----cccCCCccEEE
Q 004133 97 VDFSKVVISDMLRRNVRDRSDM-------------------------------RWRVMDMTSMQ-----VFMDETFDVIL 140 (772)
Q Consensus 97 vDiS~~~I~~a~~~~~~~~~~v-------------------------------~f~~~D~~~l~-----~~~~~sfDvVi 140 (772)
+|+|+.|++.++++........ .....|+++.. .+..++||+|+
T Consensus 83 ~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~ 162 (263)
T d2g72a1 83 TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALV 162 (263)
T ss_dssp ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEE
T ss_pred EeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeee
Confidence 9999999999987764332221 23445665422 14457899999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+..+++++..+. ....+++++++++|||||++++.+..
T Consensus 163 ~~~~l~~i~~~~---~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 163 SAFCLEAVSPDL---ASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp EESCHHHHCSSH---HHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred eHHHHHHHccCH---HHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 999999986431 22789999999999999999987653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.48 E-value=6.9e-14 Score=136.81 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=101.1
Q ss_pred chhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeecc
Q 004133 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (772)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~ 126 (772)
...++...+...+.. .++.+|||+|||+|.++..++..+ .+|+++|+++.+++.|+++....+ .+++++++|+.
T Consensus 17 t~~eir~~il~~l~~---~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~ 92 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (186)
T ss_dssp CCHHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred ChHHHHHHHHHhcCC---CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence 345677778888876 789999999999999999998875 479999999999999998876554 48999999999
Q ss_pred CcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 127 SMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 127 ~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+.. +....||+|++.+...+ ...+++.+.++|||||++++.....+
T Consensus 93 ~~~-~~~~~~D~v~~~~~~~~----------~~~~~~~~~~~LkpgG~lvi~~~~~e 138 (186)
T d1l3ia_ 93 EAL-CKIPDIDIAVVGGSGGE----------LQEILRIIKDKLKPGGRIIVTAILLE 138 (186)
T ss_dssp HHH-TTSCCEEEEEESCCTTC----------HHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred hcc-cccCCcCEEEEeCcccc----------chHHHHHHHHHhCcCCEEEEEeeccc
Confidence 987 77899999998775543 36789999999999999988776544
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=1.2e-13 Score=143.82 Aligned_cols=116 Identities=9% Similarity=0.123 Sum_probs=96.3
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCccccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFM 132 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~ 132 (772)
.+..+++....+|+.+|||||||+|.++..+++. |. +|+|+|+|+.+++.++++..+.+. .+.+...|..+++
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~--- 115 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--- 115 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---
Confidence 4556666666689999999999999999999887 76 799999999999999988765543 4667777766544
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++||.|++.++++|+.... ...+|++++++|||||++++.+..
T Consensus 116 -~~fD~i~si~~~eh~~~~~-----~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 116 -EPVDRIVSIEAFEHFGHEN-----YDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp -CCCSEEEEESCGGGTCGGG-----HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -cchhhhhHhhHHHHhhhhh-----HHHHHHHHHhccCCCceEEEEEee
Confidence 7899999999999996543 689999999999999999987643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=3e-13 Score=141.04 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=97.6
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~ 133 (772)
+..++++....|+.+|||||||.|.++.++++. |. +|+||++|+..++.++++....+ .++++..+|..+++
T Consensus 51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---- 125 (285)
T d1kpga_ 51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---- 125 (285)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----
T ss_pred HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc----
Confidence 445555566689999999999999999998887 75 79999999999999988865443 47889999987765
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++||.|++.+++.|+.... ...+++++.|+|||||++++.+++
T Consensus 126 ~~fD~i~si~~~eh~~~~~-----~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGHER-----YDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp CCCSEEEEESCGGGTCTTT-----HHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ccccceeeehhhhhcCchh-----HHHHHHHHHhhcCCCCcEEEEEEe
Confidence 6899999999999986543 679999999999999999987765
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.45 E-value=2.9e-13 Score=136.88 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=106.0
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEee
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D 124 (772)
|...++.+...+..-++....+|+++|||+|||+|..+..+++.+ ...|+|+|+|+.|++.+++++ ...+++.++..|
T Consensus 52 w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a-~~~~ni~~i~~d 130 (230)
T d1g8sa_ 52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC-AERENIIPILGD 130 (230)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT-TTCTTEEEEECC
T ss_pred ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-hhhcccceEEEe
Confidence 887778888888887776666899999999999999999999973 357999999999999998876 456788899999
Q ss_pred ccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 125 MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
......+.+..+|+++....+.+... ...++.++.+.|||||++++....
T Consensus 131 ~~~~~~~~~~~~~v~~i~~~~~~~~~-------~~~~l~~~~r~LKpgG~~~i~~k~ 180 (230)
T d1g8sa_ 131 ANKPQEYANIVEKVDVIYEDVAQPNQ-------AEILIKNAKWFLKKGGYGMIAIKA 180 (230)
T ss_dssp TTCGGGGTTTCCCEEEEEECCCSTTH-------HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred eccCcccccccceeEEeeccccchHH-------HHHHHHHHHHhcccCceEEEEeec
Confidence 98866466778888777666665533 578899999999999999887543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=4.6e-13 Score=139.97 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=96.6
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~ 133 (772)
+..+++.....++.+|||||||.|.++.++++. |. +|+|+++|+..++.++++....+. .+.+...|. + +.+
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~-~~~ 124 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---E-EFD 124 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---G-GCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---c-ccc
Confidence 444445555689999999999999999999876 76 799999999999999888765443 466666664 4 567
Q ss_pred CCccEEEecccccccccCcc--chHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 134 ETFDVILDKGGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++||.|++.+++.|+.+... .......+|+++.++|||||++++.+++.
T Consensus 125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 89999999999999975321 11237899999999999999999987764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=1.8e-13 Score=140.39 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=88.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...+.+.++.++|+.+. +++++||+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~--~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEEEEEEECCHH
T ss_pred CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEecccccc--ccccccchhhhccccc
Confidence 4789999999999999999998886 699999999999999988877777889999998764 4678999999875443
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
. ...+++++.++|||||++++..+..
T Consensus 196 ~----------l~~l~~~~~~~LkpGG~lilSgil~ 221 (254)
T d2nxca1 196 L----------HAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp H----------HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred c----------HHHHHHHHHHhcCCCcEEEEEecch
Confidence 2 4678899999999999999876543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.42 E-value=5e-13 Score=131.46 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=94.2
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC---CCCcEEEEeeccCccc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMTSMQV 130 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~---~~~v~f~~~D~~~l~~ 130 (772)
...+.+.+.. .++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++... ..++++..+|+.+ .
T Consensus 41 t~lLi~~l~~---~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~- 114 (194)
T d1dusa_ 41 TKILVENVVV---DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-N- 114 (194)
T ss_dssp HHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-T-
T ss_pred HHHHHHhCCc---CCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-h-
Confidence 4456666654 678999999999999999998875 47999999999999998876543 2368999999987 4
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++++||+|+++.++++... ....+++++.++|||||+++++...
T Consensus 115 ~~~~~fD~Ii~~~p~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 115 VKDRKYNKIITNPPIRAGKE------VLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CTTSCEEEEEECCCSTTCHH------HHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hccCCceEEEEcccEEecch------hhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 57899999999888765432 2578999999999999998876544
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.4e-13 Score=137.33 Aligned_cols=104 Identities=17% Similarity=0.085 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-cccCCCccEEEe-----
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-VFMDETFDVILD----- 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-~~~~~sfDvVi~----- 141 (772)
++.+|||||||+|..+..+++.+..+|++||+|+.+++.|+++......++.++..|+.... .+++++||.|+.
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 67899999999999999999876567999999999999999998777777888888876542 267889999873
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
...+.++.+ ...++++++|+|||||+|++.
T Consensus 133 ~~~~~~~~~-------~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 133 SEETWHTHQ-------FNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp BGGGTTTHH-------HHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccC-------HHHHHHHHHHHcCCCcEEEEE
Confidence 333333333 568999999999999999764
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.39 E-value=6.1e-13 Score=132.54 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=93.0
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEee
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D 124 (772)
|......+...+..- .....+|+++|||+|||+|..+..+++. +...|+|+|+|+.|++.+++++.. ..++.++.+|
T Consensus 35 w~p~rsklaa~i~~g-~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-~~ni~~i~~d 112 (209)
T d1nt2a_ 35 WVPWRSKLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-RNNIIPLLFD 112 (209)
T ss_dssp CCGGGCHHHHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-CSSEEEECSC
T ss_pred eCCcchHHHHHHhcc-ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-cCCceEEEee
Confidence 655555666555443 2234578999999999999999999986 545799999999999999888744 5689999999
Q ss_pred ccCcccccCCCccEEEe-cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 125 MTSMQVFMDETFDVILD-KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~-~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+.+.+ .....+|.+.. ...+.+... ...++++++++|||||++++....
T Consensus 113 ~~~~~-~~~~~~~~vd~v~~~~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 113 ASKPW-KYSGIVEKVDLIYQDIAQKNQ-------IEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp TTCGG-GTTTTCCCEEEEEECCCSTTH-------HHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccCcc-ccccccceEEEEEecccChhh-------HHHHHHHHHHHhccCCeEEEEEEc
Confidence 99876 45554443322 122322211 578999999999999999988754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.33 E-value=3.2e-12 Score=126.71 Aligned_cols=141 Identities=12% Similarity=0.181 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHH
Q 004133 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDM 107 (772)
Q Consensus 29 ~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a 107 (772)
+||.+.++.. ..++.+|-+.|. .++.. ++..|||||||+|..+..++.. +-.+++|+|+++.++..+
T Consensus 2 ~~~~~~~~~~-~~~p~~~~~~w~-------~~F~~----~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a 69 (204)
T d2fcaa1 2 DFLAENADIA-ISNPADYKGKWN-------TVFGN----DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTA 69 (204)
T ss_dssp HHHHHTTTTB-CSCGGGGTTCHH-------HHHTS----CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred cchhhCccch-hcCHHHHHhHHH-------HHcCC----CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHH
Confidence 4555555444 234555555543 23332 4568999999999999999987 346799999999999999
Q ss_pred HHHhccCC-CCcEEEEeeccCcc-cccCCCccEEEecccccccccCccchH-HHHHHHHHHHhccccCeEEEEEEcC
Q 004133 108 LRRNVRDR-SDMRWRVMDMTSMQ-VFMDETFDVILDKGGLDALMEPELGHK-LGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 108 ~~~~~~~~-~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l~~l~~~~~~~~-~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.++....+ .++.++++|+.++. .++++++|.|+......+......... ....++++++|+|||||.+++.|-.
T Consensus 70 ~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~ 146 (204)
T d2fcaa1 70 VQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 146 (204)
T ss_dssp HHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred HHHHHHHhccCchhcccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 88775544 47999999998864 478999999988766555432110000 0247999999999999999998744
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.4e-12 Score=136.91 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=87.7
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc----------CCCCcEEEEee
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR----------DRSDMRWRVMD 124 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~----------~~~~v~f~~~D 124 (772)
.+.+.++. +++++|||+|||+|.++..++.. |..+++|||+|+.+++.|++.... ...+++|+++|
T Consensus 142 ~~~~~~~l---~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 142 QMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHSCC---CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHcCC---CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 34444443 78999999999999999998876 677899999999999988765432 34579999999
Q ss_pred ccCcccccCCCc--cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 125 MTSMQVFMDETF--DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 125 ~~~l~~~~~~sf--DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+.+++ +.+..| |+|++++.+ +..+ ....+.++.++|||||++++..
T Consensus 219 ~~~~~-~~~~~~~advi~~~~~~-f~~~-------~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 219 FLSEE-WRERIANTSVIFVNNFA-FGPE-------VDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp TTSHH-HHHHHHHCSEEEECCTT-TCHH-------HHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccc-cccccCcceEEEEccee-cchH-------HHHHHHHHHHhCCCCcEEEEec
Confidence 99998 776655 677765443 3222 6789999999999999998864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=7e-13 Score=137.60 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc------CC-CeEEEEeCCHHHHHHHHHHhccCC--CCcE--EEEeeccC------cc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA------GF-HGITNVDFSKVVISDMLRRNVRDR--SDMR--WRVMDMTS------MQ 129 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~------g~-~~V~gvDiS~~~I~~a~~~~~~~~--~~v~--f~~~D~~~------l~ 129 (772)
++..+|||+|||+|.++..++.. +. ..++|||+|+.|++.++++..... .++. +.+.++.+ .+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 45568999999999998877653 21 258999999999999988874321 2333 34444332 13
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
+++++||+|++.++++|+.+ ...++++++++|+|||.+++..+.......
T Consensus 119 -~~~~~fD~I~~~~~l~~~~d-------~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~ 168 (280)
T d1jqea_ 119 -KELQKWDFIHMIQMLYYVKD-------IPATLKFFHSLLGTNAKMLIIVVSGSSGWD 168 (280)
T ss_dssp -SSCCCEEEEEEESCGGGCSC-------HHHHHHHHHHTEEEEEEEEEEEECTTSHHH
T ss_pred -CCCCceeEEEEccceecCCC-------HHHHHHHHHhhCCCCCEEEEEEecCcchHH
Confidence 56889999999999999976 568999999999999999998877654433
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=6.9e-12 Score=125.13 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=90.8
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccC
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTS 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~ 127 (772)
+.+...+.+.+.. +++++|||+|||+|.++..+++. | ...|+++|+++.+++.|+++.... ..++.+.++|+.+
T Consensus 61 P~~~a~~l~~l~l---~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~ 137 (213)
T d1dl5a1 61 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY 137 (213)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred chhhHHHHHhhhc---cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH
Confidence 3445556666665 78999999999999999999876 3 346999999999999999887554 3478999999988
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.. +.+++||+|++.+.+++++ +++.++|||||++++..
T Consensus 138 ~~-~~~~~fD~I~~~~~~~~~p-------------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 138 GV-PEFSPYDVIFVTVGVDEVP-------------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CC-GGGCCEEEEEECSBBSCCC-------------HHHHHHEEEEEEEEEEB
T ss_pred cc-ccccchhhhhhhccHHHhH-------------HHHHHhcCCCcEEEEEE
Confidence 77 6788999999999887663 24678899999998753
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=2.6e-11 Score=121.92 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=99.8
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|...+..+...+..-++....+|+++|||+|||+|..+..|++. | -..|+++|+|+.|++.+++++ ....++..+..
T Consensus 51 w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a-~~~~~~~~i~~ 129 (227)
T d1g8aa_ 51 WNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV-EERRNIVPILG 129 (227)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-SSCTTEEEEEC
T ss_pred ECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-HhcCCceEEEE
Confidence 77667788888877777666789999999999999999999997 4 357999999999999998876 45568889999
Q ss_pred eccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 124 DMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 124 D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+..... .....+|+|+.. +.+. + ....+++++.+.|||||++++...+.
T Consensus 130 d~~~~~~~~~~~~~vD~i~~d--~~~~---~----~~~~~l~~~~~~LkpgG~lvi~~ka~ 181 (227)
T d1g8aa_ 130 DATKPEEYRALVPKVDVIFED--VAQP---T----QAKILIDNAEVYLKRGGYGMIAVKSR 181 (227)
T ss_dssp CTTCGGGGTTTCCCEEEEEEC--CCST---T----HHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ECCCcccccccccceEEEEEE--cccc---c----hHHHHHHHHHHhcccCCeEEEEEECC
Confidence 9876542 334677877652 2221 1 15689999999999999999886553
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.30 E-value=4.8e-12 Score=129.51 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=87.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
....+|||||||+|.++..+++. +...++++|+ +.+++.++++....+ .+++++.+|+.+.. ..+||+|++..
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---~~~~D~v~~~~ 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---PRKADAIILSF 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SSCEEEEEEES
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc---ccchhheeecc
Confidence 45679999999999999999987 3357999998 568888888775543 47999999997633 35799999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+++.+++ ..++|++++++|||||++++....
T Consensus 155 vlh~~~d~~-----~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 155 VLLNWPDHD-----AVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp CGGGSCHHH-----HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccCCchh-----hHHHHHHHHHhcCCCcEEEEEecc
Confidence 999986543 678999999999999999998754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=4e-12 Score=130.47 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=97.8
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhcc----CCCCcEEEEe
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVR----DRSDMRWRVM 123 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~----~~~~v~f~~~ 123 (772)
|+.-...+..+++. .|+++|||+|||+|.++..|++. | ..+|+++|+++.+++.|+++... ...++.+.++
T Consensus 81 ypkD~s~Ii~~l~i---~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 81 YPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred chHHHHHHHHHhCC---CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 44556667777776 79999999999999999999987 4 35799999999999999887643 2358999999
Q ss_pred eccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 124 DMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 124 D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
|+.+.+ +++++||.|+. .+.++ ..++.++.++|||||++++..-+-.++
T Consensus 158 d~~~~~-~~~~~fDaV~l-----dlp~P-------~~~l~~~~~~LkpGG~lv~~~P~i~Qv 206 (264)
T d1i9ga_ 158 DLADSE-LPDGSVDRAVL-----DMLAP-------WEVLDAVSRLLVAGGVLMVYVATVTQL 206 (264)
T ss_dssp CGGGCC-CCTTCEEEEEE-----ESSCG-------GGGHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred cccccc-ccCCCcceEEE-----ecCCH-------HHHHHHHHhccCCCCEEEEEeCccChH
Confidence 999988 89999999874 24443 378999999999999999877554443
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=1e-11 Score=131.99 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..+++.|...|+++|.|+ +++.|++..... ..+++++++|+.+++ +++++||+|++..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-CcccceeEEEEEecc
Confidence 5789999999999999999999988899999997 556666655433 347999999999999 899999999998888
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+++..... ...++..+.|+|||||+++
T Consensus 116 ~~~~~e~~----~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESM----MDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCC----HHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchh----HHHHHHHHHhccCCCeEEE
Confidence 77765433 6788999999999999885
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.5e-11 Score=123.60 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=90.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC------CCCcEEEE
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD------RSDMRWRV 122 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~------~~~v~f~~ 122 (772)
+.+...+.+++.. ..+|+++|||+|||+|..+..|+.. | ...|+++|+++.+++.+++++.+. ..++.+.+
T Consensus 60 P~~~a~~le~L~~-~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~ 138 (224)
T d1i1na_ 60 PHMHAYALELLFD-QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV 138 (224)
T ss_dssp HHHHHHHHHHTTT-TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred hHHHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE
Confidence 4455556666521 1268899999999999999988876 4 347999999999999998876543 24789999
Q ss_pred eeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 123 MDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 123 ~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+|..+.. +++++||+|+..+.+++++ +.+.+.|||||++++..
T Consensus 139 gD~~~~~-~~~~~fD~I~~~~~~~~ip-------------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 139 GDGRMGY-AEEAPYDAIHVGAAAPVVP-------------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp SCGGGCC-GGGCCEEEEEECSBBSSCC-------------HHHHHTEEEEEEEEEEE
T ss_pred eeccccc-chhhhhhhhhhhcchhhcC-------------HHHHhhcCCCcEEEEEE
Confidence 9999887 7788999999998887653 24678999999999854
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3e-11 Score=127.22 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~-~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++.|..+|+++|.|+.++..++.... ....+++++++|+.+++ +++++||+|++....
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMG 112 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCB
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc-CccccceEEEEeeee
Confidence 3678999999999999999999998889999999998754433222 22357999999999998 888999999998777
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+++.... ....++....++|||||+++
T Consensus 113 ~~~~~e~----~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 113 YFLLFES----MLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TTBTTTC----HHHHHHHHHHHHEEEEEEEE
T ss_pred eeccccc----ccHHHHHHHHhcCCCCcEEe
Confidence 6665432 25677888889999999986
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.21 E-value=1.8e-11 Score=124.68 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=86.4
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~ 131 (772)
.+..+++. .|+++|||+|||+|.++..|++. | ..+|+++|+++.+++.|+++.... ..++++..+|+.+. +
T Consensus 76 ~Ii~~l~i---~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~--~ 150 (250)
T d1yb2a1 76 YIIMRCGL---RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--I 150 (250)
T ss_dssp -----CCC---CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--C
T ss_pred HHHHHcCC---CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc--c
Confidence 34455544 79999999999999999999986 3 457999999999999999887543 35899999999886 4
Q ss_pred cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++++||.|+.. +.++ ..+++++.++|||||++++..-+-.
T Consensus 151 ~~~~fD~V~ld-----~p~p-------~~~l~~~~~~LKpGG~lv~~~P~i~ 190 (250)
T d1yb2a1 151 SDQMYDAVIAD-----IPDP-------WNHVQKIASMMKPGSVATFYLPNFD 190 (250)
T ss_dssp CSCCEEEEEEC-----CSCG-------GGSHHHHHHTEEEEEEEEEEESSHH
T ss_pred ccceeeeeeec-----CCch-------HHHHHHHHHhcCCCceEEEEeCCcC
Confidence 67899999852 2332 3689999999999999998765433
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=2.4e-11 Score=128.35 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..+++.|..+|+++|.|+.+. .+++..... ..+++++++|+.+++ ++.++||+|++..+.
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a~~~~~~n~~~~~v~~~~~~~~~~~-~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hhhhHHHHhCCccccceEeccHHHcc-cccceeEEEeeeeee
Confidence 5789999999999999999999887899999998654 454443332 346999999999999 888999999998777
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+++..+.. ...++..+.|+|||||+++
T Consensus 111 ~~l~~e~~----~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 111 YCLFYESM----LNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTBTCC----HHHHHHHHHHHEEEEEEEE
T ss_pred eeeccHHH----HHHHHHHHHhcCCCCeEEE
Confidence 77665432 7889999999999999986
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.19 E-value=8.7e-11 Score=117.67 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=88.8
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
+.+...+.+.+.. .++++|||+|||+|.++..|+..+. +|+++|+++.+++.|+++.. ...++.++++|.....
T Consensus 56 p~~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~-~~~nv~~~~~d~~~g~- 129 (224)
T d1vbfa_ 56 LNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLS-YYNNIKLILGDGTLGY- 129 (224)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHT-TCSSEEEEESCGGGCC-
T ss_pred hhhHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHh-cccccccccCchhhcc-
Confidence 4455556666665 7899999999999999999998864 79999999999999987764 4579999999987754
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
...++||+|+..+.+.+++ +.+.+.|||||++++.
T Consensus 130 ~~~~pfD~Iiv~~a~~~ip-------------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 130 EEEKPYDRVVVWATAPTLL-------------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp GGGCCEEEEEESSBBSSCC-------------HHHHHTEEEEEEEEEE
T ss_pred hhhhhHHHHHhhcchhhhh-------------HHHHHhcCCCCEEEEE
Confidence 4568899999988877653 2456789999999875
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.17 E-value=6.4e-11 Score=121.29 Aligned_cols=106 Identities=21% Similarity=0.125 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++....+ .++.++.+|+.+ + .+ ..||+|+...
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~-~p-~~~D~v~~~~ 155 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P-LP-VTADVVLLSF 155 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C-CS-CCEEEEEEES
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-c-cc-ccchhhhccc
Confidence 45679999999999999999987 3347999998 678888887765443 468999999886 3 33 4699999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+++.+++ ..++|++++++|||||++++++..
T Consensus 156 vLh~~~d~~-----~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 156 VLLNWSDED-----ALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp CGGGSCHHH-----HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccccCcHH-----HHHHHHHHHhhcCCcceeEEEEec
Confidence 999886543 678999999999999999998753
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.16 E-value=1e-10 Score=115.65 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=87.7
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
+..|||||||+|.++..++.. +-.+++|+|+++.++..+.++.... -.++.+..+|+.++. .+++.++|.|+....-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 458999999999999999987 4567999999999999998877544 358999999998864 4788999999865543
Q ss_pred cccccCccch-HHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGH-KLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~-~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.+........ -.-..+|+.++++|||||.+++.|-..+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~ 150 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 150 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCcc
Confidence 3322110000 0025899999999999999999874433
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.12 E-value=1.2e-10 Score=116.90 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=92.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
.++++||.||.+.|..+.++...+| +.+|+++|+||...++|+++| |+ +++++++++|+.+++.+....
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~--~~~i~~~~g~a~~~L~~l~~~----- 130 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVLDEMIKD----- 130 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHC-----
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc--ccceeeeehHHHHHHHHHHhc-----
Confidence 4679999999999999999998877 579999999999999999999 55 579999999999999987521
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+|++|++... ...+++.+..+|+|||++++.
T Consensus 131 ---------------------~~~~~~fD~iFiDa~k~~-------------y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 131 ---------------------EKNHGSYDFIFVDADKDN-------------YLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp ---------------------GGGTTCBSEEEECSCSTT-------------HHHHHHHHHHHBCTTCCEEEE
T ss_pred ---------------------cccCCceeEEEeccchhh-------------hHHHHHHHHhhcCCCcEEEEc
Confidence 011357999999997763 278999999999999999875
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=1.6e-10 Score=118.81 Aligned_cols=119 Identities=16% Similarity=0.256 Sum_probs=92.6
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeec
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~ 125 (772)
|+.-..++..+++. .|+.+|||+|||+|.++..|+.. | ..+|+++|+++.+++.|+++....+ .++.+...|+
T Consensus 88 ypkd~~~Ii~~l~i---~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~ 164 (266)
T d1o54a_ 88 YPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI 164 (266)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred chHHHHHHHHhhCC---CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence 44556667777776 79999999999999999999886 3 3579999999999999998876544 3577777886
Q ss_pred cCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 126 ~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
... +....||.|+. .+.++ ..+++++.++|||||++++...+-..+
T Consensus 165 ~~~--~~~~~~D~V~~-----d~p~p-------~~~l~~~~~~LKpGG~lv~~~P~~~Qv 210 (266)
T d1o54a_ 165 SEG--FDEKDVDALFL-----DVPDP-------WNYIDKCWEALKGGGRFATVCPTTNQV 210 (266)
T ss_dssp GGC--CSCCSEEEEEE-----CCSCG-------GGTHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred ccc--ccccceeeeEe-----cCCCH-------HHHHHHHHhhcCCCCEEEEEeCcccHH
Confidence 543 56788998864 33343 478999999999999999877554443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.1e-10 Score=117.44 Aligned_cols=109 Identities=10% Similarity=0.005 Sum_probs=87.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++.+++...+ .++++||+||.+++.|++++.- ...+++++.+|+........
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~----------- 118 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-QTHKVIPLKGLWEDVAPTLP----------- 118 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-CSSEEEEEESCHHHHGGGSC-----------
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhh-cccccccccccccccccccc-----------
Confidence 3457999999999999999988755 4899999999999999999853 35678999999988766654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-CcHHHHHHHHHccCCCcEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..+||.|++|+..... ...++ ....|++.++++|+|||+|++
T Consensus 119 --------------------~~~fD~i~fD~~~~~~------~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 119 --------------------DGHFDGILYDTYPLSE------ETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp --------------------TTCEEEEEECCCCCBG------GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred --------------------cccccceeeccccccc------ccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 4679999998865521 12222 245689999999999999986
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.4e-10 Score=114.12 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=91.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
-++++||.||.|.|..+.++....| +.+|+++|+||...++|+++| |+ .+++++++||+.+.+.+...
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~--~~~i~~~~Gda~e~l~~~~~------ 129 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALETLDELLA------ 129 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHHHHHHHH------
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc--cceEEEEEeehhhcchhhhh------
Confidence 5689999999999999999998876 679999999999999999998 55 57899999999999987541
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+|++|.+...+ ..+++.+.++|+|||++++.
T Consensus 130 ---------------------~~~~~~fD~ifiD~dk~~y-------------~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 130 ---------------------AGEAGTFDVAVVDADKENC-------------SAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp ---------------------TTCTTCEEEEEECSCSTTH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------hcccCCccEEEEeCCHHHH-------------HHHHHHHHHHhcCCcEEEEe
Confidence 1124679999999876632 78899999999999999985
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=4e-10 Score=118.85 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=89.2
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhcc------------CC
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVR------------DR 115 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~------------~~ 115 (772)
|+.-...+..+++. .|+++|||+|||+|.++..|++. | ...|+++|+++.+++.|+++... ..
T Consensus 83 ypkD~~~Il~~l~i---~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~ 159 (324)
T d2b25a1 83 FPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159 (324)
T ss_dssp CHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred ccccHHHHHHHhCC---CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 44455667777776 79999999999999999999986 4 35799999999999999877642 13
Q ss_pred CCcEEEEeeccCcc-cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 116 SDMRWRVMDMTSMQ-VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 116 ~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.++.+.+.|+.+.. .+++.+||.|+. | +.++ ..++.++.++|||||++++..-+-..
T Consensus 160 ~nv~~~~~di~~~~~~~~~~~fD~V~L----D-~p~P-------~~~l~~~~~~LKpGG~lv~~~P~i~Q 217 (324)
T d2b25a1 160 DNVDFIHKDISGATEDIKSLTFDAVAL----D-MLNP-------HVTLPVFYPHLKHGGVCAVYVVNITQ 217 (324)
T ss_dssp CCEEEEESCTTCCC-------EEEEEE----C-SSST-------TTTHHHHGGGEEEEEEEEEEESSHHH
T ss_pred cceeEEecchhhcccccCCCCcceEee----c-CcCH-------HHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 47999999998764 245678998874 3 2332 25899999999999999987644333
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.05 E-value=1.9e-10 Score=114.46 Aligned_cols=138 Identities=14% Similarity=0.093 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHH
Q 004133 24 DFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKV 102 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~ 102 (772)
.|-...|+...|....-+-...-+...+.+...+.+.++. .++.+|||+|||+|..+..|+.. | .+|+++|..+.
T Consensus 37 ~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~l---~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~ 112 (215)
T d1jg1a_ 37 LSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPE 112 (215)
T ss_dssp GGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHH
T ss_pred hcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhcc---CccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHH
Confidence 3555556655565432110111122335566667777776 78999999999999999998876 6 35999999999
Q ss_pred HHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 103 VISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 103 ~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++.++++....+ .++.++++|..+.. ...+.||.|+..+.+..++. .+.+.|+|||++++..
T Consensus 113 l~~~a~~~l~~~g~~nv~~~~gd~~~g~-~~~~pfD~Iiv~~a~~~ip~-------------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 113 LVEFAKRNLERAGVKNVHVILGDGSKGF-PPKAPYDVIIVTAGAPKIPE-------------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEECSBBSSCCH-------------HHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCceeEEEECccccCC-cccCcceeEEeecccccCCH-------------HHHHhcCCCCEEEEEE
Confidence 9999998876544 68999999998865 57889999999988876632 3556799999998754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=3.6e-10 Score=119.59 Aligned_cols=133 Identities=17% Similarity=0.105 Sum_probs=100.0
Q ss_pred ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEE
Q 004133 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRV 122 (772)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~ 122 (772)
-+|.+.......+..++ .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+. +++|.+
T Consensus 127 G~flDqr~~r~~~~~~~-----~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~ 201 (324)
T d2as0a2 127 GFFLDQRENRLALEKWV-----QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV 201 (324)
T ss_dssp CCCSTTHHHHHHHGGGC-----CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred CcccchhhHHHHHHhhc-----CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee
Confidence 36666666666666666 36889999999999999999998887899999999999999888766553 689999
Q ss_pred eeccCcc---cccCCCccEEEecccccccccCccc--hHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 123 MDMTSMQ---VFMDETFDVILDKGGLDALMEPELG--HKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 123 ~D~~~l~---~~~~~sfDvVi~~~~l~~l~~~~~~--~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.+.. .....+||+|+.............. ...+.+++..+.++|+|||++++++.+.
T Consensus 202 ~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 202 GSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred chhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9987632 1346799999975443322111100 1126678899999999999999988764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=3.4e-10 Score=122.53 Aligned_cols=114 Identities=12% Similarity=0.015 Sum_probs=79.8
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC----------CCCcEE-EEee
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD----------RSDMRW-RVMD 124 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~----------~~~v~f-~~~D 124 (772)
+.+.++....+++++|||||||+|.++..++.. |...++|||+|+.+++.|+++.... .....+ ..++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 333333333378999999999999999999876 7778999999999999998775321 122333 3344
Q ss_pred ccCccccc---CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 125 MTSMQVFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 125 ~~~l~~~~---~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..+.+ +. -..+|+|+.+..+ +..+ +...|.++.|+|||||++++..
T Consensus 285 f~~~~-~~d~~~~~adVV~inn~~-f~~~-------l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 285 FVDNN-RVAELIPQCDVILVNNFL-FDED-------LNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp STTCH-HHHHHGGGCSEEEECCTT-CCHH-------HHHHHHHHHTTCCTTCEEEESS
T ss_pred hhhcc-ccccccccceEEEEeccc-CchH-------HHHHHHHHHHhcCCCcEEEEec
Confidence 44433 11 1356888876533 2222 6899999999999999998753
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=6.7e-10 Score=114.31 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+.+|||+|||+|..+..++.. ...+|+++|+|+.+++.|++++..... +++|+++|+.+. +++++||+|+++-..
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--LAGQQFAMIVSNPPY 185 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG--GTTCCEEEEEECCCC
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc--cCCCceeEEEecchh
Confidence 5679999999999999999876 446899999999999999888765554 699999999874 467899999997543
Q ss_pred cc------------------cccCccchHHHHHHHHHHHhccccCeEEEEE-EcCchhhhhcccc
Q 004133 146 DA------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCL-TLAESHVLGLLFP 191 (772)
Q Consensus 146 ~~------------------l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~-~~~~~~~~~~l~~ 191 (772)
-. +...+++...+.++++++.++|+|||.+++. .+.|......++.
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~ 250 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFI 250 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHH
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHH
Confidence 11 1111122345889999999999999999884 3444433334443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=1.3e-09 Score=106.50 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=101.0
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l 128 (772)
.+.+...+..++.. .++..+||++||+|..+..+++. +...|+|+|.++.|++.++++...-..++.++++++.++
T Consensus 8 ~pVll~evi~~l~~---~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~ 84 (192)
T d1m6ya2 8 IPVMVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREA 84 (192)
T ss_dssp CCTTHHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGH
T ss_pred CchHHHHHHHhhCC---CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhH
Confidence 34566667777765 68899999999999999999886 445799999999999999998866566899999999875
Q ss_pred c----cccCCCccEEEec-ccccc-cccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 129 Q----VFMDETFDVILDK-GGLDA-LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 129 ~----~~~~~sfDvVi~~-~~l~~-l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
. .+..++||.|+.. |+-.+ +..++.+.......|..+.++|+|||++++++|..
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 4 2446899987643 33221 22222333457899999999999999999999875
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.96 E-value=4.4e-09 Score=101.96 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDK 592 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~ 592 (772)
..+-.++++....- ..+..+||.||+|+|.++..+.... .+|++||+||.+++.|++.+ |+ .+
T Consensus 17 t~~eir~~il~~l~----------~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl--~~ 82 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAE----------PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGL--GD 82 (186)
T ss_dssp CCHHHHHHHHHHHC----------CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC--CT
T ss_pred ChHHHHHHHHHhcC----------CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCC--Cc
Confidence 44556666654321 1456789999999999999888764 48999999999999999875 65 46
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
+++++.+|+.+.+.. ...||+|+++.... ...++
T Consensus 83 ~v~~~~gda~~~~~~---------------------------------~~~~D~v~~~~~~~-------------~~~~~ 116 (186)
T d1l3ia_ 83 NVTLMEGDAPEALCK---------------------------------IPDIDIAVVGGSGG-------------ELQEI 116 (186)
T ss_dssp TEEEEESCHHHHHTT---------------------------------SCCEEEEEESCCTT-------------CHHHH
T ss_pred ceEEEECchhhcccc---------------------------------cCCcCEEEEeCccc-------------cchHH
Confidence 899999999887544 25699999964322 12789
Q ss_pred HHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHhc
Q 004133 673 LLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVF 709 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF 709 (772)
++.+.+.|+|+|.++++....+. ...+.+.++...
T Consensus 117 ~~~~~~~LkpgG~lvi~~~~~e~--~~~~~~~l~~~~ 151 (186)
T d1l3ia_ 117 LRIIKDKLKPGGRIIVTAILLET--KFEAMECLRDLG 151 (186)
T ss_dssp HHHHHHTEEEEEEEEEEECBHHH--HHHHHHHHHHTT
T ss_pred HHHHHHHhCcCCEEEEEeecccc--HHHHHHHHHHcC
Confidence 99999999999999998754432 233455555543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.95 E-value=1.4e-09 Score=111.32 Aligned_cols=119 Identities=12% Similarity=0.071 Sum_probs=91.6
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~ 123 (772)
|+.........+...+ .++.+|||+|||+|.++..++..|..+|+++|+++.+++.++++....+ ..++++++
T Consensus 90 f~~~~~~er~ri~~~~-----~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~ 164 (260)
T d2frna1 90 FSPANVKERVRMAKVA-----KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164 (260)
T ss_dssp CCGGGHHHHHHHHHHC-----CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred EecCCHHHHHHHHhhc-----CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc
Confidence 3443334444455555 4689999999999999999999887789999999999999988775544 36899999
Q ss_pred eccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 124 DMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 124 D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+.++. ..+.||.|++...-. ...++.++.++|++||++.+..+..
T Consensus 165 D~~~~~--~~~~~D~Ii~~~p~~-----------~~~~l~~a~~~l~~gG~lh~~~~~~ 210 (260)
T d2frna1 165 DNRDFP--GENIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNTVP 210 (260)
T ss_dssp CTTTCC--CCSCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred chHHhc--cCCCCCEEEECCCCc-----------hHHHHHHHHhhcCCCCEEEEEeccc
Confidence 999986 568899988642211 2357788899999999987766543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=4e-09 Score=103.75 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
..+.+|||+|||+|.++..++..|...|+|+|+++.+++.+++++.....+.++.++|+.+++ +.||+|+++..+.
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~----~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN----SRVDIVIMNPPFG 120 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC----CCCSEEEECCCCS
T ss_pred CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhC----CcCcEEEEcCccc
Confidence 467899999999999999998888778999999999999999888776778899999987765 6799999987765
Q ss_pred cc
Q 004133 147 AL 148 (772)
Q Consensus 147 ~l 148 (772)
..
T Consensus 121 ~~ 122 (201)
T d1wy7a1 121 SQ 122 (201)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.92 E-value=1.1e-09 Score=107.21 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=70.8
Q ss_pred ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEee
Q 004133 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (772)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D 124 (772)
|-|.....+...+...+...+.-.+.+|||+|||+|.++..++..|..+|+++|+++.+++.++++. .++.|.++|
T Consensus 25 eQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~~~~~~~~D 100 (197)
T d1ne2a_ 25 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC----GGVNFMVAD 100 (197)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC----TTSEEEECC
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc----ccccEEEEe
Confidence 3355545555444333322222468899999999999999998888888999999999999987665 478999999
Q ss_pred ccCcccccCCCccEEEecccccc
Q 004133 125 MTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
+.+++ ++||+|+++-.+..
T Consensus 101 ~~~l~----~~fD~Vi~NPPfg~ 119 (197)
T d1ne2a_ 101 VSEIS----GKYDTWIMNPPFGS 119 (197)
T ss_dssp GGGCC----CCEEEEEECCCC--
T ss_pred hhhcC----CcceEEEeCcccch
Confidence 98866 68999999876643
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.90 E-value=1.2e-09 Score=109.34 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=86.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc----CC---CeEEEEeCCHHHHHHHHHHhcc------CCCCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----GF---HGITNVDFSKVVISDMLRRNVR------DRSDM 118 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~----g~---~~V~gvDiS~~~I~~a~~~~~~------~~~~v 118 (772)
.+...+.+++.. ..+++.+|||+|||+|.++..|+.. |. .+|+++|+++.+++.++++... ...++
T Consensus 65 ~~~a~~l~~L~~-~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv 143 (223)
T d1r18a_ 65 HMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 143 (223)
T ss_dssp HHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred hhHHHHHHHHhh-ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence 445555666521 1268899999999999999888765 21 3699999999999999776432 23479
Q ss_pred EEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 119 RWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 119 ~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.+.++|..+.. .+.+.||+|+..+.+..++. .+.+.|||||++++..
T Consensus 144 ~~~~~d~~~~~-~~~~~fD~Iiv~~a~~~~p~-------------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 144 LIVEGDGRKGY-PPNAPYNAIHVGAAAPDTPT-------------ELINQLASGGRLIVPV 190 (223)
T ss_dssp EEEESCGGGCC-GGGCSEEEEEECSCBSSCCH-------------HHHHTEEEEEEEEEEE
T ss_pred EEEeccccccc-ccccceeeEEEEeechhchH-------------HHHHhcCCCcEEEEEE
Confidence 99999998866 57789999999888876532 4678999999998864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.90 E-value=2.9e-09 Score=99.92 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+.+|||+|||+|.++...+.+|..+|+++|.++.+++.++++....+ .+++++++|+.+......++||+|+.....
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 578999999999999999999998899999999999999988775443 358999999988422567899999864332
Q ss_pred cccccCccchHHHHHHHHHHH--hccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~~ii~~ 179 (772)
. .......++.+. ++|+|||.+++.+
T Consensus 94 ~--------~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 A--------KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp H--------HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred c--------cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 1 122456666654 5799999998764
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.90 E-value=5.1e-09 Score=103.16 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=97.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+-||.||+|.|.....|+...|+..+++||+++.++..|.+...-..-++++++.+|+..++....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~------------- 96 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE------------- 96 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-------------
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC-------------
Confidence 4569999999999999999999999999999999999999877621122579999999998775543
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHH
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 702 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 702 (772)
+..+|.|++- .++|..--.-....+++.+||+.+++.|+|||+|.+- +.+..+.+.++
T Consensus 97 ------------------~~~~d~v~i~--fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~--TD~~~y~~~~~ 154 (204)
T d2fcaa1 97 ------------------PGEVKRVYLN--FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK--TDNRGLFEYSL 154 (204)
T ss_dssp ------------------TTSCCEEEEE--SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE--ESCHHHHHHHH
T ss_pred ------------------chhhhccccc--cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE--ECChHHHHHHH
Confidence 3568888873 3332110000123578899999999999999998763 45667666666
Q ss_pred HHHHHh
Q 004133 703 SRMKMV 708 (772)
Q Consensus 703 ~~l~~v 708 (772)
+.+.+.
T Consensus 155 ~~~~~~ 160 (204)
T d2fcaa1 155 KSFSEY 160 (204)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 666554
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.89 E-value=1.4e-09 Score=110.54 Aligned_cols=121 Identities=16% Similarity=0.236 Sum_probs=92.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+||.+|+|+|+++.+|.+. .|..+|+++|+++.+++.|++.+ .+....+++++.+|..+.+.
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~------------ 151 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS------------ 151 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC------------
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc------------
Confidence 45579999999999999998876 46779999999999999999987 22235789999999755321
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
...||+|++|+-++ .+++..+.+.|+|||+|++.+.+- +..
T Consensus 152 ----------------------~~~fD~V~ld~p~p---------------~~~l~~~~~~LKpGG~lv~~~P~i--~Qv 192 (250)
T d1yb2a1 152 ----------------------DQMYDAVIADIPDP---------------WNHVQKIASMMKPGSVATFYLPNF--DQS 192 (250)
T ss_dssp ----------------------SCCEEEEEECCSCG---------------GGSHHHHHHTEEEEEEEEEEESSH--HHH
T ss_pred ----------------------cceeeeeeecCCch---------------HHHHHHHHHhcCCCceEEEEeCCc--ChH
Confidence 35699999976322 467999999999999999887543 334
Q ss_pred HHHHHHHHHh-ccce
Q 004133 699 DMVISRMKMV-FNHL 712 (772)
Q Consensus 699 ~~v~~~l~~v-F~~v 712 (772)
..+++.|++. |.++
T Consensus 193 ~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 193 EKTVLSLSASGMHHL 207 (250)
T ss_dssp HHHHHHSGGGTEEEE
T ss_pred HHHHHHHHHCCCcee
Confidence 5566777654 5543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.86 E-value=1.7e-09 Score=113.97 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=86.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc---cccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ---VFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~---~~~~~sfDvVi~~~ 143 (772)
.+.+|||++||+|.++..++.. ..+|+++|+|+.+++.+++++...+. +++|+++|+.+.. ....++||+|+...
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 5789999999999999998764 45799999999999999988766553 7999999998742 13467899999755
Q ss_pred cccccccCcc--chHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDALMEPEL--GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.......... .......++..+.++|||||.+++.+.+.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 4332221110 01125678999999999999999988764
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=6.8e-09 Score=106.03 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=95.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.+|+|.|+++.+|.+. .|..+|+++|+++++++.|++.+ +....++++++++|+.+. .
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~----~------- 163 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS----E------- 163 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC----C-------
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc----c-------
Confidence 45679999999999999999877 57789999999999999999865 222346899999997642 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
..+..||+||+|+.++ .+++..+++.|+|||.+++.+.+ -+
T Consensus 164 ----------------------~~~~~fDaV~ldlp~P---------------~~~l~~~~~~LkpGG~lv~~~P~--i~ 204 (264)
T d1i9ga_ 164 ----------------------LPDGSVDRAVLDMLAP---------------WEVLDAVSRLLVAGGVLMVYVAT--VT 204 (264)
T ss_dssp ----------------------CCTTCEEEEEEESSCG---------------GGGHHHHHHHEEEEEEEEEEESS--HH
T ss_pred ----------------------ccCCCcceEEEecCCH---------------HHHHHHHHhccCCCCEEEEEeCc--cC
Confidence 1246799999987433 57799999999999999987644 33
Q ss_pred HHHHHHHHHHH--hccceEEE
Q 004133 697 TKDMVISRMKM--VFNHLFCL 715 (772)
Q Consensus 697 ~~~~v~~~l~~--vF~~v~~~ 715 (772)
....+++.|+. -|.++..+
T Consensus 205 Qv~~~~~~l~~~~~f~~i~~~ 225 (264)
T d1i9ga_ 205 QLSRIVEALRAKQCWTEPRAW 225 (264)
T ss_dssp HHHHHHHHHHHHSSBCCCEEE
T ss_pred hHHHHHHHHHHcCCeecceEE
Confidence 44556777753 36654443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.84 E-value=8.5e-09 Score=100.51 Aligned_cols=125 Identities=16% Similarity=0.242 Sum_probs=93.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++..+....+ +|++||+|+.+++.|++.+ ++ .+.+++++.+|..+.+.
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l-~~~~i~~~~~d~~~~~~----------- 116 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYENVK----------- 116 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTTTCT-----------
T ss_pred CCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCC-ccceEEEEEcchhhhhc-----------
Confidence 4568999999999999999988764 7999999999999999876 44 35679999999765421
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC---CcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF---VEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f---~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
+..||+|+++. |-+. ....+++.+.+.|+|||++++-+. ..
T Consensus 117 -----------------------~~~fD~Ii~~~------------p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~-~~ 160 (194)
T d1dusa_ 117 -----------------------DRKYNKIITNP------------PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ-TK 160 (194)
T ss_dssp -----------------------TSCEEEEEECC------------CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE-ST
T ss_pred -----------------------cCCceEEEEcc------------cEEecchhhhhHHHHHHHhcCcCcEEEEEEe-Cc
Confidence 36799999842 1111 235789999999999998876332 22
Q ss_pred hhHHHHHHHHHHHhccceEEEe
Q 004133 695 QATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 695 ~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
...+.+...+++.|..+..+.
T Consensus 161 -~~~~~~~~~l~~~f~~~~~~~ 181 (194)
T d1dusa_ 161 -QGAKSLAKYMKDVFGNVETVT 181 (194)
T ss_dssp -HHHHHHHHHHHHHHSCCEEEE
T ss_pred -CCHHHHHHHHHHhCCcEEEEE
Confidence 223455677788888766554
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=5.5e-09 Score=105.45 Aligned_cols=104 Identities=11% Similarity=0.122 Sum_probs=81.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++.+|.+..+ .+|++||++|.+++.|++.. |+ +++++++.+|+.++. .
T Consensus 32 ~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl--~~~v~~~~~d~~~~~---~-------- 97 (245)
T d1nkva_ 32 KPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDAAGYV---A-------- 97 (245)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCCTTCC---C--------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhc--cccchhhhhHHhhcc---c--------
Confidence 3457999999999999999988865 69999999999999999875 55 678999999986641 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
+.+||+|++= .....+ ++ -..+|+.+++.|+|||.+++...
T Consensus 98 -----------------------~~~fD~v~~~----~~~~~~----~d--~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 98 -----------------------NEKCDVAACV----GATWIA----GG--FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp -----------------------SSCEEEEEEE----SCGGGT----SS--SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -----------------------cCceeEEEEE----ehhhcc----CC--HHHHHHHHHHHcCcCcEEEEEec
Confidence 3679999861 111111 11 27899999999999999998754
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.81 E-value=5.7e-09 Score=109.72 Aligned_cols=132 Identities=19% Similarity=0.096 Sum_probs=93.8
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
||-+.......+...+ .++.+|||++||+|.++..++..|...|+++|+|+.+++.+++++..++ .+++|++
T Consensus 127 lflDqR~~r~~l~~~~-----~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~ 201 (317)
T d2b78a2 127 IFLDQRQVRNELINGS-----AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 201 (317)
T ss_dssp SCGGGHHHHHHHHHTT-----TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE
T ss_pred CcHHHHHHHHHHHHHh-----hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE
Confidence 5555444444444444 3578999999999999999888888889999999999999988875444 3689999
Q ss_pred eeccCcc---cccCCCccEEEecccccccccCc--cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 123 MDMTSMQ---VFMDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 123 ~D~~~l~---~~~~~sfDvVi~~~~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.+.- .-....||+|+....-..-.... .......++++.+.++|+|||.+++.+.+.
T Consensus 202 ~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 202 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9997631 02356899998643211111000 011226789999999999999999988763
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.80 E-value=8.1e-09 Score=106.49 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=81.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
++..+||.||+|.|.++.+|.+.+ ..+|++||++|.+++.|++.. |+ +++++++.+|+.+. .
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl--~~~v~~~~~d~~~l----~-------- 130 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEI----P-------- 130 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSC----S--------
T ss_pred CCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc--cccccccccccccc----c--------
Confidence 566799999999999999998875 468999999999999999886 65 57899999998653 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+..||+|+.- ....-+.. -..+|+.+.+.|+|||.|++.-+
T Consensus 131 ---------------------~~~~sfD~V~~~----~~l~h~~d------~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 131 ---------------------CEDNSYDFIWSQ----DAFLHSPD------KLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp ---------------------SCTTCEEEEEEE----SCGGGCSC------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---------------------ccccccchhhcc----chhhhccC------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 124679999861 11111211 26799999999999999998644
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.78 E-value=1e-08 Score=102.60 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=86.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|+|.++..|.+.. .+|++||+++.+++.|+++..-..-+++.++.+|+.+. .
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~----~----------- 77 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL----P----------- 77 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC----C-----------
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccc----c-----------
Confidence 456789999999999999998875 48999999999999999987322235799999997542 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC-CChhHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS-RSQATKD 699 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~-~~~~~~~ 699 (772)
..+.+||+|++-- ...-+.. -..+|+.+++.|+|||.+++..+. .......
T Consensus 78 ------------------~~~~~fD~v~~~~----~l~~~~d------~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~ 129 (234)
T d1xxla_ 78 ------------------FPDDSFDIITCRY----AAHHFSD------VRKAVREVARVLKQDGRFLLVDHYAPEDPVLD 129 (234)
T ss_dssp ------------------SCTTCEEEEEEES----CGGGCSC------HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHH
T ss_pred ------------------ccccccceeeeec----eeecccC------HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHH
Confidence 1246799998711 1111111 278999999999999988875433 2333333
Q ss_pred HHHHHHHH
Q 004133 700 MVISRMKM 707 (772)
Q Consensus 700 ~v~~~l~~ 707 (772)
.+.+.+..
T Consensus 130 ~~~~~~~~ 137 (234)
T d1xxla_ 130 EFVNHLNR 137 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444433
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=4.3e-09 Score=104.52 Aligned_cols=109 Identities=9% Similarity=0.199 Sum_probs=86.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
.+|++||.||.|.|..+.++...++ +.+|++||++|.+++.|++++ |+ .+++++++||+.+.+.+....
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl--~~~i~l~~Gd~~e~l~~l~~~----- 127 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL--QDKVTILNGASQDLIPQLKKK----- 127 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHGGGHHHH-----
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC--Cccceeeeccccccccchhhc-----
Confidence 4678999999999999999998875 579999999999999999887 65 578999999999998876421
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.....||+|++|.+... ......|..+.++|+|||++++.
T Consensus 128 ----------------------~~~~~~D~ifiD~~~~~-----------~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 128 ----------------------YDVDTLDMVFLDHWKDR-----------YLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp ----------------------SCCCCEEEEEECSCGGG-----------HHHHHHHHHHTTCEEEEEEEEES
T ss_pred ----------------------ccccccceeeecccccc-----------cccHHHHHHHhCccCCCcEEEEe
Confidence 11357999999864331 11233466677889999999873
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.77 E-value=1.4e-08 Score=98.99 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCCchhH----HHHHHc----CC-CeEEEEeCCHHHHHHHHHHh------------------ccCC----
Q 004133 67 SPPPQILVPGCGNSRLS----EHLYDA----GF-HGITNVDFSKVVISDMLRRN------------------VRDR---- 115 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls----~~La~~----g~-~~V~gvDiS~~~I~~a~~~~------------------~~~~---- 115 (772)
.+..+|+++|||+|.-. ..+.+. +. -+|+|+|+|+.+|+.|++-. ....
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 35679999999999854 333332 11 25999999999999987321 0000
Q ss_pred ----------CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 116 ----------SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 116 ----------~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
..+.+...+.......+.+.||+|++.++|.++..+. ..++++.+++.|+|||++++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~-----~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTT-----QEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHH-----HHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHH-----HHHHHHHHHHHhCCCcEEEEe
Confidence 1234555555543313457899999999999986543 789999999999999987754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=3.8e-08 Score=100.99 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=106.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
..+.+||.+|+|+|+++..|....|+.+|++||+++..+++|++.. ++ .+++++.+|..+.+ .
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~---~~v~~~~~d~~~~~---~-------- 172 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSAL---A-------- 172 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGGG---T--------
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc---ccceeeeccccccc---C--------
Confidence 4567899999999999999999999999999999999999999885 54 46999999965532 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeC---CCCC----CCCCCCcCCcCCCc--------HHHHHHHHHccCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDV---DSPD----SSSGMTCPAADFVE--------GSFLLTVKDALSE 682 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~---~~~d----~~~g~s~Pp~~f~~--------~~fl~~~~~~L~~ 682 (772)
+.+||+|+..- ...+ +..--..|...+.. ..++..+.+.|++
T Consensus 173 -----------------------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~ 229 (274)
T d2b3ta1 173 -----------------------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS 229 (274)
T ss_dssp -----------------------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE
T ss_pred -----------------------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC
Confidence 25799999842 1110 00011234444443 3488889999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHh-ccceEEEeecCCceEEEEEe
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~ 728 (772)
+|.+++-+-.... +.+.+.+.+. |..+..++--.+.+++++|.
T Consensus 230 ~G~l~lEig~~q~---~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 230 GGFLLLEHGWQQG---EAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp EEEEEEECCSSCH---HHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred CCEEEEEECchHH---HHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 9999997643222 3445555544 87777776556678888874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=1e-08 Score=105.04 Aligned_cols=124 Identities=17% Similarity=0.216 Sum_probs=93.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+||.+|+|.|+++.+|.+.. |..+|+++|++|.+++.|++.+. +...+++.+..+|....
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-------------- 167 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-------------- 167 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--------------
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc--------------
Confidence 556899999999999999998876 67799999999999999998872 11257888888884221
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
.....||.|++|+-+ | .++++.+.+.|+|||.+++.+++ -+..
T Consensus 168 --------------------~~~~~~D~V~~d~p~---------p------~~~l~~~~~~LKpGG~lv~~~P~--~~Qv 210 (266)
T d1o54a_ 168 --------------------FDEKDVDALFLDVPD---------P------WNYIDKCWEALKGGGRFATVCPT--TNQV 210 (266)
T ss_dssp --------------------CSCCSEEEEEECCSC---------G------GGTHHHHHHHEEEEEEEEEEESS--HHHH
T ss_pred --------------------ccccceeeeEecCCC---------H------HHHHHHHHhhcCCCCEEEEEeCc--ccHH
Confidence 113569999997632 2 56799999999999999988754 3444
Q ss_pred HHHHHHHHHh-ccceEEE
Q 004133 699 DMVISRMKMV-FNHLFCL 715 (772)
Q Consensus 699 ~~v~~~l~~v-F~~v~~~ 715 (772)
..+++.|++. |..+..+
T Consensus 211 ~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 211 QETLKKLQELPFIRIEVW 228 (266)
T ss_dssp HHHHHHHHHSSEEEEEEE
T ss_pred HHHHHHHHHCCceeEEEE
Confidence 5667777764 6544333
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.73 E-value=1.3e-08 Score=101.19 Aligned_cols=105 Identities=12% Similarity=0.194 Sum_probs=78.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|+|.++..+.+.. .+|++||+++.+++.|++.+.-...++++++++|+.+. .
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l----~----------- 76 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM----P----------- 76 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC----C-----------
T ss_pred CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccc----c-----------
Confidence 455799999999999999888875 48999999999999999886322347899999997653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+..||+|++-- ....+.- -..+|..+.+.|+|||.|++.-
T Consensus 77 ------------------~~~~~fD~v~~~~----~l~~~~d------~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 77 ------------------FTDERFHIVTCRI----AAHHFPN------PASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp ------------------SCTTCEEEEEEES----CGGGCSC------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------ccccccccccccc----cccccCC------HHHHHHHHHHhcCCCcEEEEEe
Confidence 1146799998721 1011111 2689999999999999888743
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.72 E-value=1.4e-08 Score=105.59 Aligned_cols=135 Identities=19% Similarity=0.056 Sum_probs=93.4
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
+|.+.......+..++... ..+.+|||++||+|.++..++..|. +||+||.|+.+++.|++++..++ .+++|++
T Consensus 112 ~f~dqr~nr~~~~~~~~~~--~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~ 188 (309)
T d2igta1 112 VFPEQIVHWEWLKNAVETA--DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 188 (309)
T ss_dssp CCGGGHHHHHHHHHHHHHS--SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC
T ss_pred cccchhHHHHHHHHHHhhc--cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe
Confidence 5655556666666655421 3467999999999999999998887 79999999999999988765432 2589999
Q ss_pred eeccCcc---cccCCCccEEEecccccccccCc---cchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 123 MDMTSMQ---VFMDETFDVILDKGGLDALMEPE---LGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 123 ~D~~~l~---~~~~~sfDvVi~~~~l~~l~~~~---~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+|+.+.- ......||+||..---....... .-......+++.+.++|+|||.+++++.+..
T Consensus 189 ~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~ 255 (309)
T d2igta1 189 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 255 (309)
T ss_dssp SCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred CCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 9998742 12357899998643211111100 0011245677888899999998776655444
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=2.3e-08 Score=105.03 Aligned_cols=128 Identities=14% Similarity=0.164 Sum_probs=92.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcC----------C-CCCCCeEEEEccHHHHHHhh
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFG----------F-TQDKSLKVHITDGIKFVREM 608 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg----------~-~~~~rl~v~i~Dg~~~l~~~ 608 (772)
....+||.+|+|.|+++.+|++.. |..+|.++|+++.+++.|++.+. + ...+++.++.+|..++....
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 456799999999999999988764 67799999999999999998761 1 12468999999865543322
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 609 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
. ...||.||+|+-++ .+++..+++.|+|||.|++
T Consensus 177 ~-------------------------------~~~fD~V~LD~p~P---------------~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 177 K-------------------------------SLTFDAVALDMLNP---------------HVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp -----------------------------------EEEEEECSSST---------------TTTHHHHGGGEEEEEEEEE
T ss_pred C-------------------------------CCCcceEeecCcCH---------------HHHHHHHHHhccCCCEEEE
Confidence 2 35699999987332 3468999999999999998
Q ss_pred EecCCChhHHHHHHHHHHHh---ccceEEEe
Q 004133 689 NLVSRSQATKDMVISRMKMV---FNHLFCLQ 716 (772)
Q Consensus 689 Nl~~~~~~~~~~v~~~l~~v---F~~v~~~~ 716 (772)
.+.+- +....+++.|+.. |..+..+.
T Consensus 211 ~~P~i--~Qv~~~~~~l~~~~~~f~~i~~~E 239 (324)
T d2b25a1 211 YVVNI--TQVIELLDGIRTCELALSCEKISE 239 (324)
T ss_dssp EESSH--HHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred EeCCH--HHHHHHHHHHHHcCCCceeeEEEE
Confidence 76443 3445567777654 44443333
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.69 E-value=4e-08 Score=96.56 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=97.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..+-||.||+|.|.....++..+|+..+.+||+++.++..|.+...-..-++++++.+||.++.....
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~------------ 98 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE------------ 98 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC------------
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhcc------------
Confidence 34579999999999999999999999999999999999988776521112579999999987654332
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
...+|.|++ .-+||..-..-.-..+++.+||+.+.+.|+|||.|.+ .+.+..+.+.+
T Consensus 99 -------------------~~~~~~i~i--~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i--~TD~~~Y~~~~ 155 (204)
T d1yzha1 99 -------------------DGEIDRLYL--NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF--KTDNRGLFEYS 155 (204)
T ss_dssp -------------------TTCCSEEEE--ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE--EESCHHHHHHH
T ss_pred -------------------CCceehhcc--cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE--EECCccHHHHH
Confidence 356888876 3344321111112357899999999999999999875 35566766666
Q ss_pred HHHHHHh
Q 004133 702 ISRMKMV 708 (772)
Q Consensus 702 ~~~l~~v 708 (772)
+..+...
T Consensus 156 le~~~~~ 162 (204)
T d1yzha1 156 LVSFSQY 162 (204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 6666554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.67 E-value=5.1e-08 Score=99.06 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=91.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.+|+|+|.++..+.... .+|++||+||.+++.|++.... .+-+.+++.+|..+.+.
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~-n~~~~~~~~~d~~~~~~-------------- 181 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKR-NGVRPRFLEGSLEAALP-------------- 181 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHH-TTCCCEEEESCHHHHGG--------------
T ss_pred CccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHH-cCCceeEEecccccccc--------------
Confidence 345799999999999998887753 5899999999999999987632 12245788999766422
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+..+... .-.+++..++++|+|||.|++.=+-. ...+.
T Consensus 182 --------------------~~~fD~V~ani~~~-------------~l~~l~~~~~~~LkpGG~lilSgil~--~~~~~ 226 (254)
T d2nxca1 182 --------------------FGPFDLLVANLYAE-------------LHAALAPRYREALVPGGRALLTGILK--DRAPL 226 (254)
T ss_dssp --------------------GCCEEEEEEECCHH-------------HHHHHHHHHHHHEEEEEEEEEEEEEG--GGHHH
T ss_pred --------------------ccccchhhhccccc-------------cHHHHHHHHHHhcCCCcEEEEEecch--hhHHH
Confidence 25699999854222 12678899999999999999852212 22345
Q ss_pred HHHHHHHh-ccceEEEeecCCceEEEEEec
Q 004133 701 VISRMKMV-FNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 701 v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~ 729 (772)
+.+.+++. |..+... ...+++.+.++
T Consensus 227 v~~~~~~~Gf~~~~~~---~~~~Wv~l~~~ 253 (254)
T d2nxca1 227 VREAMAGAGFRPLEEA---AEGEWVLLAYG 253 (254)
T ss_dssp HHHHHHHTTCEEEEEE---EETTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEE---EECCEEEEEEe
Confidence 56666665 4333322 23357666543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.67 E-value=2.5e-08 Score=100.25 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.++.+||.||+|+|.++..|.+.. .+|++||+++.|++.|++.+.. ...+++++.+|+.++ .
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~-~~~~i~~~~~d~~~l----~----------- 101 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKE-RNLKIEFLQGDVLEI----A----------- 101 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHH-TTCCCEEEESCGGGC----C-----------
T ss_pred CCCCEEEEeCCCCCccchhhcccc--eEEEEEeecccccccccccccc-ccccchheehhhhhc----c-----------
Confidence 456789999999999988888864 5899999999999999998742 234799999998654 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...+||+|++=. +. .... ++++ -..+|+.+++.|+|||+|++-+.+
T Consensus 102 -------------------~~~~fD~I~~~~-~~---~~~~-~~~~--~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 102 -------------------FKNEFDAVTMFF-ST---IMYF-DEED--LRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp -------------------CCSCEEEEEECS-SG---GGGS-CHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------------------cccccchHhhhh-hh---hhcC-ChHH--HHHHHHHHHHHcCCCcEEEEEecc
Confidence 125799999711 10 0000 0111 147999999999999999986643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.67 E-value=3.3e-08 Score=94.49 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc---ccccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM---QVFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l---~~~~~~sfDvVi~~~~ 144 (772)
.+.+|||+|||+|.++...+.+|. +++++|.++.+++.+++++.......++...|.... ......+||+|+..-.
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 578999999999999999999987 699999999999999888765555556666655432 1145678999987654
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+.. + .......+++ ..+|+|||++++.+
T Consensus 120 Y~~--~---~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 120 YAM--D---LAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp TTS--C---TTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred ccc--C---HHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 332 1 0111233332 36899999988764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.65 E-value=3.1e-08 Score=98.47 Aligned_cols=107 Identities=12% Similarity=0.246 Sum_probs=78.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|+|.++..|.+.. |+.+|++||+++.|++.|++.. ......++.+..+|..++ .
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~----~-------- 105 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----E-------- 105 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC----C--------
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc----c--------
Confidence 445689999999999999888764 6789999999999999999876 333466788888886544 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...+|+|++-. . ... .++.+ -..+|+++++.|+|||.|++--
T Consensus 106 -----------------------~~~~d~i~~~~--~---l~~-~~~~d--~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 106 -----------------------IKNASMVILNF--T---LQF-LPPED--RIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp -----------------------CCSEEEEEEES--C---GGG-SCGGG--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------------cccceeeEEee--e---ccc-cChhh--HHHHHHHHHHhCCCCceeeccc
Confidence 25688887621 1 000 01111 2479999999999999999753
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=8.2e-08 Score=92.66 Aligned_cols=105 Identities=10% Similarity=0.065 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.+.+|||++||+|.++.+.+.+|...|+.||.++.+++.++++..... .+.+++..|+.+.-......||+|+......
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 468999999999999999999999899999999999999988765433 3788999998864324567899999765432
Q ss_pred ccccCccchHHHHHHHHHHHh--ccccCeEEEEEEc
Q 004133 147 ALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~r--vLkpGG~~ii~~~ 180 (772)
. ......+..+.+ +|+++|.+++.+.
T Consensus 123 ~--------~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 123 R--------GLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp T--------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred c--------chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1 114566666654 6999999988653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.64 E-value=7.8e-08 Score=95.99 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=102.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..|+... |..+|.+||++|.+++.|++... ....+..+..|+...- ...
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~--~~~~~~~i~~d~~~~~-~~~---------- 138 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE--ERRNIVPILGDATKPE-EYR---------- 138 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS--SCTTEEEEECCTTCGG-GGT----------
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHH--hcCCceEEEEECCCcc-ccc----------
Confidence 455799999999999999999986 66799999999999999998864 2356778888875421 111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC-----
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS----- 694 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~----- 694 (772)
.....+|+|+.|+...+ ....++.++++.|+|||.+++-+.+++
T Consensus 139 -------------------~~~~~vD~i~~d~~~~~------------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~ 187 (227)
T d1g8aa_ 139 -------------------ALVPKVDVIFEDVAQPT------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK 187 (227)
T ss_dssp -------------------TTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTS
T ss_pred -------------------ccccceEEEEEEccccc------------hHHHHHHHHHHhcccCCeEEEEEECCccCCCC
Confidence 11357999999874432 236799999999999999998654332
Q ss_pred --hhHHHHHHHHHHHhccceEEEeec--CCceEEEEEec
Q 004133 695 --QATKDMVISRMKMVFNHLFCLQLE--EDVNLVLFGLS 729 (772)
Q Consensus 695 --~~~~~~v~~~l~~vF~~v~~~~~~--~~~N~vl~a~~ 729 (772)
......+...+++-|.-+-.+.+. +..+.+++|.+
T Consensus 188 ~~~~v~~~v~~l~~~gf~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 188 EPEQVFREVERELSEYFEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECTTTSSSEEEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEcCCCCCCceEEEEEEe
Confidence 233444455556667655444432 33456777765
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.63 E-value=1.4e-07 Score=97.89 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=83.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.++.+||.+++|+|++...+... ..+|+.||+++..++.|++++ |+ .+.+++++.+|+.+|++....
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~-~~~~~~~i~~D~~~~l~~~~~------- 200 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQREER------- 200 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHHHHH-------
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcc-cCCcEEEEeCCHHHhHHHHhh-------
Confidence 46789999999999998887765 358999999999999999988 44 345799999999999988652
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc-CC----CcHHHHHHHHHccCCCcE-EEEEec
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA-DF----VEGSFLLTVKDALSEQGL-FIVNLV 691 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~-~f----~~~~fl~~~~~~L~~~Gi-lv~Nl~ 691 (772)
.+.+||+||+|--.- +.. +.. .+ +-...+..++.+|+|+|. ++++..
T Consensus 201 ----------------------~~~~fD~IilDPP~f----~~~-~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 201 ----------------------RGSTYDIILTDPPKF----GRG-THGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp ----------------------HTCCBSEEEECCCSE----EEC-TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ----------------------cCCCCCEEEECCCcc----ccc-ccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 147899999963211 100 011 11 123456778889999885 555554
Q ss_pred C
Q 004133 692 S 692 (772)
Q Consensus 692 ~ 692 (772)
+
T Consensus 254 s 254 (309)
T d2igta1 254 S 254 (309)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.63 E-value=1e-08 Score=103.40 Aligned_cols=106 Identities=22% Similarity=0.228 Sum_probs=80.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|+|.++..|.+.. .+|++||+++.|++.|++...- ...+++++.+|+.++ .
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~-~~~~v~~~~~d~~~~----~----------- 97 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRS-QGLKPRLACQDISNL----N----------- 97 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHH-TTCCCEEECCCGGGC----C-----------
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccc-cCccceeeccchhhh----c-----------
Confidence 456789999999999999998875 4899999999999999987632 234689999998764 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC----cHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~----~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
...+||+|++=. +. -..+. -..+|+.++++|+|||+|++.+.+.
T Consensus 98 -------------------~~~~fD~i~~~~-~~---------~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 98 -------------------INRKFDLITCCL-DS---------TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp -------------------CSCCEEEEEECT-TG---------GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred -------------------ccccccccceee-ee---------eeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 125799998711 10 11122 1458999999999999999887533
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=3.6e-08 Score=97.84 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=79.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|....+ .+|++||+++.+++.|++.+.....++++++.+|+.++-
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~--------------- 122 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--------------- 122 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC---------------
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccc---------------
Confidence 4557899999999999887765544 389999999999999999986443467899999987751
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~N 689 (772)
....+||+|++-- . + .++-+ .++|..+++.|+|+|.+++-
T Consensus 123 ------------------~~~~~fD~I~~~~-~------l----~h~~~~~~~~~l~~i~~~Lk~~G~~~i~ 165 (222)
T d2ex4a1 123 ------------------PEPDSYDVIWIQW-V------I----GHLTDQHLAEFLRRCKGSLRPNGIIVIK 165 (222)
T ss_dssp ------------------CCSSCEEEEEEES-C------G----GGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------------------ccccccccccccc-c------c----ccchhhhhhhHHHHHHHhcCCcceEEEE
Confidence 1146899998721 1 1 11212 46999999999999988863
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.62 E-value=1.6e-07 Score=94.00 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=101.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|..+..|+...|...|.+||++|.+++.|++--. ..+++..+.+|+.....-..
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~--~~~ni~~i~~d~~~~~~~~~----------- 139 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA--ERENIIPILGDANKPQEYAN----------- 139 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT--TCTTEEEEECCTTCGGGGTT-----------
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh--hhcccceEEEeeccCccccc-----------
Confidence 45678999999999999999999998899999999999999988753 35678889998876432211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC------
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~------ 694 (772)
....+|+|+.|+...+ -...++.++++.|+|||.+++-+..++
T Consensus 140 -------------------~~~~v~~i~~~~~~~~------------~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~ 188 (230)
T d1g8sa_ 140 -------------------IVEKVDVIYEDVAQPN------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD 188 (230)
T ss_dssp -------------------TCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC
T ss_pred -------------------ccceeEEeeccccchH------------HHHHHHHHHHHhcccCceEEEEeeccccCCCCC
Confidence 1234666666553321 127789999999999999887654332
Q ss_pred -hhHHHHHHHHHHHh-ccceEEEeec--CCceEEEEEe
Q 004133 695 -QATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGL 728 (772)
Q Consensus 695 -~~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~vl~a~ 728 (772)
....+.+.+.|++. |.-+-.+.+. +..+.+++|.
T Consensus 189 ~~~~~~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 189 PKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEE
Confidence 23445667777765 7655555543 2345566664
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.62 E-value=8.7e-08 Score=94.49 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=98.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+..+||.||+|.|.++.+|....|..+|++||++|.+++.|++...- .+++.++++|+...-..
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--~~ni~~i~~d~~~~~~~------------- 119 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--RNNIIPLLFDASKPWKY------------- 119 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--CSSEEEECSCTTCGGGT-------------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--cCCceEEEeeccCcccc-------------
Confidence 455799999999999999999999988999999999999999887642 35789999987542111
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC-------
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR------- 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~------- 693 (772)
......+|+|+.|+...+ ....++.++.+.|+|||.+++-...+
T Consensus 120 -----------------~~~~~~vd~v~~~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~ 170 (209)
T d1nt2a_ 120 -----------------SGIVEKVDLIYQDIAQKN------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAE 170 (209)
T ss_dssp -----------------TTTCCCEEEEEECCCSTT------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSC
T ss_pred -----------------ccccceEEEEEecccChh------------hHHHHHHHHHHHhccCCeEEEEEEccccCCCCC
Confidence 111346888888653331 23679999999999999998866432
Q ss_pred ChhHHHHHHHHHHHhccceEEEee
Q 004133 694 SQATKDMVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 694 ~~~~~~~v~~~l~~vF~~v~~~~~ 717 (772)
.....+.+...+.+-|.-+-.+.+
T Consensus 171 ~~~~~~~~~~~l~~gf~i~E~i~L 194 (209)
T d1nt2a_ 171 PEEVFKSVLKEMEGDFKIVKHGSL 194 (209)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcc
Confidence 123456667777777876555554
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.60 E-value=7.5e-08 Score=101.37 Aligned_cols=145 Identities=8% Similarity=0.100 Sum_probs=99.8
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCC
Q 004133 514 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ 590 (772)
Q Consensus 514 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~ 590 (772)
+|.....+.+++.+. ....+||.+|.|+|+.+.++..... .+|++||+++..++.|++.+ |+
T Consensus 129 flDqr~~r~~~~~~~------------~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl-- 193 (324)
T d2as0a2 129 FLDQRENRLALEKWV------------QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGV-- 193 (324)
T ss_dssp CSTTHHHHHHHGGGC------------CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred ccchhhHHHHHHhhc------------CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCC--
Confidence 445556666664321 3357999999999999988877643 48999999999999999987 44
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC---
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--- 667 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--- 667 (772)
+++++++.+|+.+++..... .+.+||+||+|.-..-. .....
T Consensus 194 ~~~~~~~~~d~~~~~~~~~~-----------------------------~~~~fD~Vi~DpP~~~~------~~~~~~~~ 238 (324)
T d2as0a2 194 EDRMKFIVGSAFEEMEKLQK-----------------------------KGEKFDIVVLDPPAFVQ------HEKDLKAG 238 (324)
T ss_dssp GGGEEEEESCHHHHHHHHHH-----------------------------TTCCEEEEEECCCCSCS------SGGGHHHH
T ss_pred CccceeeechhhhhhHHHHh-----------------------------ccCCCCchhcCCccccC------CHHHHHHH
Confidence 46899999999999987652 24789999997532210 01111
Q ss_pred --CcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHhc
Q 004133 668 --VEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVF 709 (772)
Q Consensus 668 --~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF 709 (772)
.-.+++..+.++|+|||+|++-..+..-. .+.+.+.+.+++
T Consensus 239 ~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~f~~~v~~a~ 281 (324)
T d2as0a2 239 LRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQMFKDMIIAAG 281 (324)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHHHHHHHHHHH
Confidence 12457888889999999999765444322 123344444444
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.59 E-value=4.3e-08 Score=96.45 Aligned_cols=107 Identities=18% Similarity=0.297 Sum_probs=78.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
++..+||.||+|+|.++..|.+. +.+|+++|+++.+++.|++.+.- ....+..+.+|+.+. .
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~-~~~~~~~~~~d~~~l----~----------- 97 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKS-RESNVEFIVGDARKL----S----------- 97 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH-TTCCCEEEECCTTSC----C-----------
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcc-ccccccccccccccc----c-----------
Confidence 34568999999999999999876 46899999999999999987632 234678888887663 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~-Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
..+..||+|++= . .+.+ |+.+ -..+|+.+.+.|+|||.|++-..+
T Consensus 98 ------------------~~~~~fD~I~~~----~---~l~~~~~~d--~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 98 ------------------FEDKTFDYVIFI----D---SIVHFEPLE--LNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp ------------------SCTTCEEEEEEE----S---CGGGCCHHH--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------------------ccCcCceEEEEe----c---chhhCChhH--HHHHHHHHHHHcCcCcEEEEEEcC
Confidence 124679999871 1 1111 1111 245899999999999999987653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.59 E-value=6.9e-08 Score=98.09 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 540 VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 540 ~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.....+||.+|+|.|.++..|...... +|++||+++.+++.|++.+. ..++++++++|..++ .
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~----~---------- 153 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETA----T---------- 153 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGC----C----------
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhcccc--ccccceeEEcccccc----c----------
Confidence 356679999999999888765544333 89999999999999999985 346789999998665 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~ 688 (772)
..+.+||+|++- .. -.++-+ ..||+.+++.|+|||.|++
T Consensus 154 -------------------~~~~~fD~I~~~----~v-------l~hl~d~d~~~~l~~~~~~LkpgG~iii 195 (254)
T d1xtpa_ 154 -------------------LPPNTYDLIVIQ----WT-------AIYLTDADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp -------------------CCSSCEEEEEEE----SC-------GGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------------------cCCCccceEEee----cc-------ccccchhhhHHHHHHHHHhcCCCcEEEE
Confidence 124689999871 11 122322 3789999999999999998
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.58 E-value=7.9e-08 Score=89.91 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=79.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+..+||.+|+|+|++......... .+|++||+|+..++.+++.+... ..++++++.+|+.+++....
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~----------- 81 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT----------- 81 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC-----------
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccc-----------
Confidence 457999999999999886665543 49999999999999999998322 35789999999999987643
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC-cCCCcHHHHHHHHH--ccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-ADFVEGSFLLTVKD--ALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp-~~f~~~~fl~~~~~--~L~~~Gilv~Nl 690 (772)
.+||+|++|. | ..-.....+..+.. .|+|+|++++-.
T Consensus 82 ---------------------~~fDiIf~DP------------Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 82 ---------------------GRFDLVFLDP------------PYAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp ---------------------SCEEEEEECC------------SSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ---------------------cccceeEech------------hhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 6799999952 2 11123456666653 589999998753
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.55 E-value=1.2e-07 Score=95.84 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
....+|||||||+|.++..++++ +.-+++..|+.+ +++.+ ....+++++.+|+.+. .+ ..|+++...+|
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~-----~~~~ri~~~~gd~~~~--~p--~~D~~~l~~vL 149 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIENA-----PPLSGIEHVGGDMFAS--VP--QGDAMILKAVC 149 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTTC-----CCCTTEEEEECCTTTC--CC--CEEEEEEESSG
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhhcc-----CCCCCeEEecCCcccc--cc--cceEEEEehhh
Confidence 44689999999999999999987 444799999844 44322 2345899999999763 34 45999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|...+++ ..++|+++++.|+|||+++++++.
T Consensus 150 h~~~de~-----~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 150 HNWSDEK-----CIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp GGSCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEEE
Confidence 9986543 789999999999999999998753
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=2.1e-07 Score=95.09 Aligned_cols=121 Identities=13% Similarity=0.033 Sum_probs=84.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
+..+|||+|||+|..+..++..+..+|+++|+|+.+++.|++++..... .+.+...|+.+......++||+|+++-..
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence 4568999999999999988877666899999999999999888765443 56778888877431234799999987542
Q ss_pred c----------------ccccCccchHHHHHHHHHHHhccccCeEEEEE-EcCchhhhhcccc
Q 004133 146 D----------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL-TLAESHVLGLLFP 191 (772)
Q Consensus 146 ~----------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~-~~~~~~~~~~l~~ 191 (772)
- ++..++++...+.++ +.+.|+|||++++. .+.|......++.
T Consensus 190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig~~Q~~~v~~l~~ 249 (271)
T d1nv8a_ 190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIGEDQVEELKKIVS 249 (271)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECCTTCHHHHTTTST
T ss_pred cCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEECHHHHHHHHHHHH
Confidence 1 111122333334454 45789999998874 4555554444444
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.54 E-value=2.3e-07 Score=97.14 Aligned_cols=131 Identities=14% Similarity=0.124 Sum_probs=92.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.+++|+|+.+..+... ...+|++||+++..+++|++.+ |+ ...+++++.+|+.+|++....
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l-~~~~~~~i~~d~~~~l~~~~~-------- 213 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHL-DMANHQLVVMDVFDYFKYARR-------- 213 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTC-CCTTEEEEESCHHHHHHHHHH--------
T ss_pred CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcc-cCcceEEEEccHHHHHHHHHh--------
Confidence 3579999999999998776654 3348999999999999999998 44 346899999999999988652
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-----cHHHHHHHHHccCCCcEEEEEecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-----~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+.+||+||+|.-+-.. -+.... -.+.++.+.++|+|||+|++-..+.
T Consensus 214 ---------------------~~~~fD~Ii~DPP~f~~------~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 214 ---------------------HHLTYDIIIIDPPSFAR------NKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp ---------------------TTCCEEEEEECCCCC-----------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ---------------------hcCCCCEEEEcChhhcc------chhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 24689999997422110 011111 2457888889999999999866444
Q ss_pred ChhHHHHHHHHHHHhcc
Q 004133 694 SQATKDMVISRMKMVFN 710 (772)
Q Consensus 694 ~~~~~~~v~~~l~~vF~ 710 (772)
.-. .+.+...+.+.|.
T Consensus 267 ~~~-~~~f~~~v~~a~~ 282 (317)
T d2b78a2 267 NMT-VSQFKKQIEKGFG 282 (317)
T ss_dssp TSC-HHHHHHHHHHHHT
T ss_pred cCC-HHHHHHHHHHHHH
Confidence 322 2334455555554
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.3e-07 Score=94.24 Aligned_cols=121 Identities=14% Similarity=0.157 Sum_probs=84.8
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhcC---CC
Q 004133 514 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFG---FT 589 (772)
Q Consensus 514 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fg---~~ 589 (772)
++..|+..+.+.-+.. .. ..+..+||.||+|+|.++..|.+. .|..+|++||+++.+++.|++.+. +.
T Consensus 56 ~is~P~~~a~~le~L~-~~-------l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~ 127 (224)
T d1i1na_ 56 TISAPHMHAYALELLF-DQ-------LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT 127 (224)
T ss_dssp EECCHHHHHHHHHHTT-TT-------SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH
T ss_pred hhhhhHHHHHHHHHHh-hc-------cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc
Confidence 5666776665533211 10 134569999999999988888775 456799999999999999998872 21
Q ss_pred --CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC
Q 004133 590 --QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF 667 (772)
Q Consensus 590 --~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f 667 (772)
...+++++++||..-... ...||+|+++....+ .|
T Consensus 128 ~~~~~~~~~~~gD~~~~~~~---------------------------------~~~fD~I~~~~~~~~-------ip--- 164 (224)
T d1i1na_ 128 LLSSGRVQLVVGDGRMGYAE---------------------------------EAPYDAIHVGAAAPV-------VP--- 164 (224)
T ss_dssp HHHTSSEEEEESCGGGCCGG---------------------------------GCCEEEEEECSBBSS-------CC---
T ss_pred cccccceEEEEeecccccch---------------------------------hhhhhhhhhhcchhh-------cC---
Confidence 236789999998653211 256999999653321 11
Q ss_pred CcHHHHHHHHHccCCCcEEEEEec
Q 004133 668 VEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 668 ~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
+.+.+.|+|||.+|+-+.
T Consensus 165 ------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 165 ------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp ------HHHHHTEEEEEEEEEEES
T ss_pred ------HHHHhhcCCCcEEEEEEc
Confidence 346678999999998664
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.53 E-value=8.6e-08 Score=93.25 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=80.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|..+.+|.+.. .+|++||+++.+++.|++...-..-+++++.++|..++-
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~---------------- 91 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT---------------- 91 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC----------------
T ss_pred CCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc----------------
Confidence 45699999999999999999874 589999999999999998874323357899999865541
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
....||+|+.-. . . ...|++. -..+++.+.+.|+|+|++++.....
T Consensus 92 ------------------~~~~fD~I~~~~--~--~--~~~~~~~--~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 92 ------------------FDGEYDFILSTV--V--M--MFLEAQT--IPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp ------------------CCCCEEEEEEES--C--G--GGSCTTH--HHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ------------------ccccccEEEEee--e--e--ecCCHHH--HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 135799999722 1 0 1112222 2579999999999999999876443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.53 E-value=9.8e-08 Score=94.83 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=78.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
-++.+||.||+|+|.++..+.+.. .+|++||+++.+++.|++.+. ++++++.+|..++ .
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~----~----------- 77 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK----DGITYIHSRFEDA----Q----------- 77 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGC----C-----------
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc----ccccccccccccc----c-----------
Confidence 346789999999999999988764 479999999999999999875 3689999986543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHH-HccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK-DALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~-~~L~~~Gilv~Nl~~~ 693 (772)
.+.+||+|++ .+.-..+..| ..+|..++ +.|+|||.+++-++..
T Consensus 78 -------------------~~~~fD~I~~----~~vleh~~d~------~~~l~~i~~~~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 78 -------------------LPRRYDNIVL----THVLEHIDDP------VALLKRINDDWLAEGGRLFLVCPNA 122 (225)
T ss_dssp -------------------CSSCEEEEEE----ESCGGGCSSH------HHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred -------------------cccccccccc----cceeEecCCH------HHHHHHHHHHhcCCCceEEEEeCCc
Confidence 1367999986 2211122222 77888987 6799999999987544
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.52 E-value=8.4e-08 Score=98.85 Aligned_cols=105 Identities=23% Similarity=0.262 Sum_probs=80.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.++.+||.||+|.|.++..|...+|. .+|++||+++.+++.|++.+.-. ..+++++.+|+.++ .
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-~~~~~f~~~d~~~~----~---------- 90 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-PYDSEFLEGDATEI----E---------- 90 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-SSEEEEEESCTTTC----C----------
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-cccccccccccccc----c----------
Confidence 56789999999999999999998874 68999999999999999988432 23688899987542 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
. ..+||+|++-- ....+..| ..+|+.+.+.|+|||.+++-.
T Consensus 91 -------------------~-~~~fD~v~~~~----~l~~~~d~------~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 91 -------------------L-NDKYDIAICHA----FLLHMTTP------ETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp -------------------C-SSCEEEEEEES----CGGGCSSH------HHHHHHHHHTEEEEEEEEEEE
T ss_pred -------------------c-cCCceEEEEeh----hhhcCCCH------HHHHHHHHHHcCcCcEEEEEE
Confidence 0 24699999731 11112222 679999999999999988643
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.51 E-value=6.2e-07 Score=94.14 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=102.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc----CC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA----GF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~----g~--~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
.++.+|||+|||+|.+...+++. +. .+++|+|+++.+++.|+.+.........+.+.|..... ....||+|+
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--LVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--CCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc--ccccccccc
Confidence 56789999999999999887653 21 35999999999999888776655667888888876654 568999999
Q ss_pred ecccccccccCc-----------cchHHHHHHHHHHHhccccCeEEEEEEcCc-------hhhhhcccccccCCcEEEEE
Q 004133 141 DKGGLDALMEPE-----------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE-------SHVLGLLFPKFRFGWKMSVH 202 (772)
Q Consensus 141 ~~~~l~~l~~~~-----------~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~-------~~~~~~l~~~~~~~w~~~~~ 202 (772)
++..+......+ ........+++.+.+.|+|||+++++.-.. ..+++.++.. .+...+.
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~---~~i~~ii 270 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN---GHIEGII 270 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH---EEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhC---CcEEEEE
Confidence 988764332211 000123457899999999999987775321 1122223332 3444556
Q ss_pred EcCCCCCCCCCcceEEEEEEecCC
Q 004133 203 AIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 203 ~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
.++..-=.....+..+.+++|.+.
T Consensus 271 ~lp~~~F~~~~~~t~ilvl~K~~~ 294 (328)
T d2f8la1 271 KLPETLFKSEQARKSILILEKADV 294 (328)
T ss_dssp ECCGGGSCC-CCCEEEEEEEECCT
T ss_pred ECCccccCCCCCCeEEEEEECCCC
Confidence 655211123456677888888654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=5.7e-08 Score=99.51 Aligned_cols=98 Identities=12% Similarity=0.199 Sum_probs=79.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.++.+||.||+|.|.+...|.+.+|+.++++||+++.+++.|++.. ++++++++|+.+. .
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l----~----------- 142 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRL----P----------- 142 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSC----S-----------
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhc----c-----------
Confidence 5678999999999999999999999999999999999999999874 4689999997543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+..||+|+.- ++ |. .++.+.+.|+|||.|++..+..
T Consensus 143 ------------------~~~~sfD~v~~~-~~----------~~------~~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 143 ------------------FSDTSMDAIIRI-YA----------PC------KAEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp ------------------BCTTCEEEEEEE-SC----------CC------CHHHHHHHEEEEEEEEEEEECT
T ss_pred ------------------CCCCCEEEEeec-CC----------HH------HHHHHHHHhCCCcEEEEEeeCC
Confidence 124679999861 11 11 2577899999999999987654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.51 E-value=1.2e-07 Score=91.00 Aligned_cols=111 Identities=8% Similarity=-0.029 Sum_probs=77.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC------------CCCCeEEEEccHHHHHHhh
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREM 608 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------------~~~rl~v~i~Dg~~~l~~~ 608 (772)
.++.+||+||+|.|..+.+|++. +.+|++||+++.+++.|++..+-. ....++++.+|..+.-...
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 45679999999999999999987 369999999999999999986421 1344567777765532221
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 609 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...||+|+.-. . +...+. -....+++.+.+.|+|||.+++
T Consensus 97 --------------------------------~~~~D~i~~~~-~------l~~l~~-~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 97 --------------------------------IGHCAAFYDRA-A------MIALPA-DMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp --------------------------------HHSEEEEEEES-C------GGGSCH-HHHHHHHHHHHHHSCSEEEEEE
T ss_pred --------------------------------ccceeEEEEEe-e------eEecch-hhhHHHHHHHHHhcCCCcEEEE
Confidence 24689987611 1 100111 1235789999999999998876
Q ss_pred EecCC
Q 004133 689 NLVSR 693 (772)
Q Consensus 689 Nl~~~ 693 (772)
.....
T Consensus 137 ~~~~~ 141 (201)
T d1pjza_ 137 ITLEY 141 (201)
T ss_dssp EEESS
T ss_pred EEccc
Confidence 55443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=1e-07 Score=94.32 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=76.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.+..+||.||+|+|.++..|.+.. +..+|+++|+++.+++.|++.+.-..-.++.++++|+.+-...
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~------------ 141 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE------------ 141 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG------------
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc------------
Confidence 456799999999999999888765 5679999999999999999988433346788899998653221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|+++..-. ++ .+.+.+.|+|||.+++-+
T Consensus 142 ---------------------~~~fD~I~~~~~~~-----------~~-----p~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 142 ---------------------FSPYDVIFVTVGVD-----------EV-----PETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp ---------------------GCCEEEEEECSBBS-----------CC-----CHHHHHHEEEEEEEEEEB
T ss_pred ---------------------ccchhhhhhhccHH-----------Hh-----HHHHHHhcCCCcEEEEEE
Confidence 25699999854221 11 134567799999998754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.48 E-value=2.9e-07 Score=88.68 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=87.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~ 129 (772)
.+++.+..++... ..+.+|||++||+|.++.+.+.+|...|++||.++.+++.++++.... ..++++.++|+.+.-
T Consensus 27 ~vrealFn~l~~~--~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l 104 (182)
T d2fhpa1 27 KVKESIFNMIGPY--FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL 104 (182)
T ss_dssp HHHHHHHHHHCSC--CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhh
Confidence 4445555555431 367899999999999999999999989999999999999998776432 236899999997631
Q ss_pred -c--ccCCCccEEEecccccccccCccchHHHHHHHHHHHh--ccccCeEEEEEE
Q 004133 130 -V--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLT 179 (772)
Q Consensus 130 -~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~~ii~~ 179 (772)
. -....||+|+....... ......++.+.. +|+++|.+++.+
T Consensus 105 ~~~~~~~~~fDlIflDPPY~~--------~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 105 EQFYEEKLQFDLVLLDPPYAK--------QEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHTTCCEEEEEECCCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhcccCCCcceEEechhhhh--------hHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 0 23568999986554321 115667777754 799999888754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.48 E-value=1.9e-07 Score=94.56 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=77.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+.+.+|+.+++++|+ |.+++.|++.+.- ...+|++++.+|..+. .
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~---~----------- 143 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---L----------- 143 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---C-----------
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh---c-----------
Confidence 4567999999999999999999999999999998 7789999988721 1257899999996431 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~N 689 (772)
...||+|++- .. + -++-+ ..+|+++++.|+|||.|++.
T Consensus 144 ---------------------~~~~D~v~~~----~v---l----h~~~d~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 144 ---------------------PRKADAIILS----FV---L----LNWPDHDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp ---------------------SSCEEEEEEE----SC---G----GGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ---------------------ccchhheeec----cc---c----ccCCchhhHHHHHHHHHhcCCCcEEEEE
Confidence 2469999861 10 0 11222 36799999999999987764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.48 E-value=1.2e-07 Score=93.68 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=83.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
....++..++.. ..+.+|||+|||+|..+..|+.. + ..+|+++|+++.+++.+++.....+ .+++++.+|..+
T Consensus 43 ~~G~lL~~lv~~---~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e 119 (214)
T d2cl5a1 43 AKGQIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD 119 (214)
T ss_dssp HHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc
Confidence 334445555543 34579999999999999999875 2 2479999999999999987765433 369999999877
Q ss_pred c-c----cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 M-Q----VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l-~----~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. + .+..+.||+|+..+.-+... ....+.+..++|||||++++-.
T Consensus 120 ~l~~l~~~~~~~~~D~ifiD~~~~~~~--------~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 120 LIPQLKKKYDVDTLDMVFLDHWKDRYL--------PDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp HGGGHHHHSCCCCEEEEEECSCGGGHH--------HHHHHHHHTTCEEEEEEEEESC
T ss_pred cccchhhcccccccceeeecccccccc--------cHHHHHHHhCccCCCcEEEEeC
Confidence 4 2 13456899998654322211 2346778889999999887633
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.46 E-value=5.1e-07 Score=94.59 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=86.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
+..+||.+|+|+|+.+..+... ..+|++||+++..++.|++.+....-.+++++.+|+.++++....
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~----------- 211 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK----------- 211 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-----------
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHh-----------
Confidence 4579999999999998887654 358999999999999999987322224689999999999988652
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-----cHHHHHHHHHccCCCcEEEEEecCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-----~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+.+||+||+|.-.... ...... -.+++..+.+.|+|||+|++...+.
T Consensus 212 ------------------~~~~fD~Vi~DpP~~~~------~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 212 ------------------EGERFDLVVLDPPAFAK------GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp ------------------TTCCEEEEEECCCCSCC------STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ------------------hhcCCCEEEEcCCcccc------chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 24789999998632211 111211 2367888899999999999876543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.45 E-value=2e-07 Score=92.81 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=74.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|+|.++..|... +.+|++||+++.+++.|++...- .++.+|+.+. .
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~------~~~~~~~~~l----~----------- 97 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK------NVVEAKAEDL----P----------- 97 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS------CEEECCTTSC----C-----------
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccc------cccccccccc----c-----------
Confidence 45678999999999999999876 36899999999999999997531 3566765442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE--eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILII--DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv--D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
..+.+||+|++ ++..- +.- ...+|+.+.+.|+|||++++.+..
T Consensus 98 ------------------~~~~~fD~ii~~~~~~~~-----~~d------~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 98 ------------------FPSGAFEAVLALGDVLSY-----VEN------KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp ------------------SCTTCEEEEEECSSHHHH-----CSC------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ------------------cccccccceeeecchhhh-----hhh------HHHHHHHHHhhcCcCcEEEEEECC
Confidence 12468999986 12110 111 267999999999999999998754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.44 E-value=4e-07 Score=93.64 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|.++.++.+..+ .+|++|++++..++.|++.. |+ ..++.+...|..++
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l--~~~~~~~~~d~~~~------------- 114 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDF------------- 114 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGC-------------
T ss_pred CCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhcc--ccchhhhhhhhhhh-------------
Confidence 4567999999999999999988865 59999999999999999886 44 56788888885543
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+||.|+. ++... + +.. .-..||+.+++.|+|||.+++..+..
T Consensus 115 -----------------------~~~fD~i~si~~~eh-----~--~~~--~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 115 -----------------------AEPVDRIVSIEAFEH-----F--GHE--NYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp -----------------------CCCCSEEEEESCGGG-----T--CGG--GHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred -----------------------ccchhhhhHhhHHHH-----h--hhh--hHHHHHHHHHhccCCCceEEEEEeec
Confidence 257999975 11111 1 011 12689999999999999999986544
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.43 E-value=3.6e-07 Score=90.86 Aligned_cols=98 Identities=23% Similarity=0.374 Sum_probs=75.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|+|.++..|.+.. .+|++||+++.+++.|++.+.- ..+++++.+|+..-..+
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~------------- 131 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEE------------- 131 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGG-------------
T ss_pred cccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhc--ccccccccCchhhcchh-------------
Confidence 455789999999999999998875 4899999999999999998753 47899999998653222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...||+|++..--. .+ ...+.+.|+|||.+|+-+-
T Consensus 132 --------------------~~pfD~Iiv~~a~~-----------~i-----p~~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 132 --------------------EKPYDRVVVWATAP-----------TL-----LCKPYEQLKEGGIMILPIG 166 (224)
T ss_dssp --------------------GCCEEEEEESSBBS-----------SC-----CHHHHHTEEEEEEEEEEEC
T ss_pred --------------------hhhHHHHHhhcchh-----------hh-----hHHHHHhcCCCCEEEEEEc
Confidence 25699999943211 11 1334578999999998653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=7.4e-07 Score=91.13 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=86.6
Q ss_pred CCCCeEEEEcccccHHHHHHH----HhCCCC--cEEEEEcCHHHHHHHHHhcCC-C--CCCCeEEEEccHHHHHHhhccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLH----ECMPFV--GIEAVELDLTMLNLAEDYFGF-T--QDKSLKVHITDGIKFVREMKSS 611 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~----~~~p~~--~i~~VEiDp~v~~vA~~~Fg~-~--~~~rl~v~i~Dg~~~l~~~~~~ 611 (772)
....+||.||+|.|.++..|. ..++.. ++++||+++.+++.|++.+.- . ..-++.++..++.+|......
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 117 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE- 117 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT-
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc-
Confidence 344589999999998766554 345544 679999999999999998732 2 223456677777777554331
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 612 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....+||+|+. ......+.-| ..+|+.+++.|+|||++++.+.
T Consensus 118 --------------------------~~~~~~fD~I~~----~~~l~~~~d~------~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 118 --------------------------KKELQKWDFIHM----IQMLYYVKDI------PATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp --------------------------SSSCCCEEEEEE----ESCGGGCSCH------HHHHHHHHHTEEEEEEEEEEEE
T ss_pred --------------------------cCCCCceeEEEE----ccceecCCCH------HHHHHHHHhhCCCCCEEEEEEe
Confidence 123578999987 1111111111 6899999999999999999887
Q ss_pred CCChhHHHHHHHHHHHhc
Q 004133 692 SRSQATKDMVISRMKMVF 709 (772)
Q Consensus 692 ~~~~~~~~~v~~~l~~vF 709 (772)
...... ..+...+...|
T Consensus 162 ~~~~~~-~~l~~~~~~~~ 178 (280)
T d1jqea_ 162 SGSSGW-DKLWKKYGSRF 178 (280)
T ss_dssp CTTSHH-HHHHHHHGGGS
T ss_pred cCcchH-HHHHHHHHHhc
Confidence 655433 33344444444
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.42 E-value=1.1e-07 Score=96.26 Aligned_cols=112 Identities=12% Similarity=0.017 Sum_probs=76.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.+..+||.||+|.|.....+.... ..+|++||+++.+++.|++.. ......++.++++|+..- ..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~---~~---------- 88 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR---HM---------- 88 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS---CC----------
T ss_pred CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh---cc----------
Confidence 456789999999996656565553 347999999999999999775 333456899999997421 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....||+|++-. .- ..+ +.+.=.-..+|+.+.+.|+|||+|++.+.
T Consensus 89 -------------------~~~~~fD~V~~~~-~l---~~~--~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 89 -------------------DLGKEFDVISSQF-SF---HYA--FSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp -------------------CCSSCEEEEEEES-CG---GGG--GSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -------------------cccccceEEEEcc-ee---eec--CCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 1136799998721 11 000 00000014689999999999999998774
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.38 E-value=4.5e-07 Score=89.55 Aligned_cols=125 Identities=16% Similarity=0.241 Sum_probs=86.6
Q ss_pred eecC-CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC
Q 004133 509 KVYH-GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 587 (772)
Q Consensus 509 ~~d~-~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 587 (772)
.++. .++..||..+++.-++ . ..+..+||.||.|+|.++..|.+... .+|++||+|+.+++.|++.+.
T Consensus 54 ~i~~g~~is~P~~~a~ml~~L--~--------l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~ 122 (215)
T d1jg1a_ 54 PIPAGQTVSAPHMVAIMLEIA--N--------LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLE 122 (215)
T ss_dssp ECSTTCEECCHHHHHHHHHHH--T--------CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhHHHHHHhh--c--------cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHH
Confidence 3444 3667788766553321 1 14557999999999999998888754 579999999999999998762
Q ss_pred CCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC
Q 004133 588 FTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF 667 (772)
Q Consensus 588 ~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f 667 (772)
-..-+++.++.+|+.+-... ...||+|++..... ..|.
T Consensus 123 ~~g~~nv~~~~gd~~~g~~~---------------------------------~~pfD~Iiv~~a~~-------~ip~-- 160 (215)
T d1jg1a_ 123 RAGVKNVHVILGDGSKGFPP---------------------------------KAPYDVIIVTAGAP-------KIPE-- 160 (215)
T ss_dssp HTTCCSEEEEESCGGGCCGG---------------------------------GCCEEEEEECSBBS-------SCCH--
T ss_pred HcCCceeEEEECccccCCcc---------------------------------cCcceeEEeecccc-------cCCH--
Confidence 11236899999999652211 35699999943222 2222
Q ss_pred CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 668 VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 668 ~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+.+.|++||.+|+-+...
T Consensus 161 -------~l~~qL~~gGrLv~pv~~~ 179 (215)
T d1jg1a_ 161 -------PLIEQLKIGGKLIIPVGSY 179 (215)
T ss_dssp -------HHHHTEEEEEEEEEEECSS
T ss_pred -------HHHHhcCCCCEEEEEEccC
Confidence 2456799999999876433
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=6.3e-07 Score=88.75 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=86.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
....++..++.. ....+|||+|||+|..+..++.. + ..+|+.+|.++...+.|++.....+ ..++++.+|+.+
T Consensus 46 ~~g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e 122 (219)
T d2avda1 46 EQAQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 122 (219)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence 344444444443 35689999999999999999885 2 3579999999999999988875443 469999999876
Q ss_pred c-c----cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 128 M-Q----VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 128 l-~----~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
. + ....++||+|+..+ -.. .+..+++.+.++|+|||.+++-..
T Consensus 123 ~l~~~~~~~~~~~fD~ifiD~----dk~------~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 123 TLDELLAAGEAGTFDVAVVDA----DKE------NCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp HHHHHHHTTCTTCEEEEEECS----CST------THHHHHHHHHHHEEEEEEEEEECC
T ss_pred cchhhhhhcccCCccEEEEeC----CHH------HHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3 1 12367899998643 111 167899999999999999988653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=7.2e-07 Score=86.86 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=72.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.||+|+|.++..+. ++++||++|.+++.|++. +++++.+|+.+. .
T Consensus 37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l----~------------- 86 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-------GVFVLKGTAENL----P------------- 86 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBC----C-------------
T ss_pred CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-------cccccccccccc----c-------------
Confidence 3579999999998766652 578999999999999974 478999997543 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
..+..||+|+.- ..-.-+.- -..+|+.+++.|+|||.+++..+..+.
T Consensus 87 ----------------~~~~~fD~I~~~----~~l~h~~d------~~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 87 ----------------LKDESFDFALMV----TTICFVDD------PERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp ----------------SCTTCEEEEEEE----SCGGGSSC------HHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred ----------------cccccccccccc----cccccccc------cccchhhhhhcCCCCceEEEEecCCcc
Confidence 124679999872 11111111 257999999999999999998876543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=7.7e-07 Score=88.45 Aligned_cols=111 Identities=7% Similarity=0.026 Sum_probs=81.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-----------------CCCCeEEEEccHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----------------QDKSLKVHITDGIK 603 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-----------------~~~rl~v~i~Dg~~ 603 (772)
....+||++|+|.|..+.+|++.. .+|++||++|.+++.|++..+.. ...++++.++|..+
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 456799999999999999998863 58999999999999998876431 24678899999766
Q ss_pred HHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC
Q 004133 604 FVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 683 (772)
Q Consensus 604 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~ 683 (772)
..... ...||+|+.-. ....+ +|. .-..+++.+.++|+||
T Consensus 122 l~~~~--------------------------------~~~fd~i~~~~----~l~~~--~~~--~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 122 LPRTN--------------------------------IGKFDMIWDRG----ALVAI--NPG--DRKCYADTMFSLLGKK 161 (229)
T ss_dssp GGGSC--------------------------------CCCEEEEEESS----STTTS--CGG--GHHHHHHHHHHTEEEE
T ss_pred ccccc--------------------------------cCceeEEEEEE----EEEec--cch--hhHHHHHHHHhhcCCc
Confidence 53221 35799997511 11111 222 2467999999999999
Q ss_pred cEEEEEecCC
Q 004133 684 GLFIVNLVSR 693 (772)
Q Consensus 684 Gilv~Nl~~~ 693 (772)
|.+++.....
T Consensus 162 G~~~l~~~~~ 171 (229)
T d2bzga1 162 FQYLLCVLSY 171 (229)
T ss_dssp EEEEEEEEEC
T ss_pred ceEEEEEccc
Confidence 9877665543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.32 E-value=6.9e-07 Score=88.74 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=83.3
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhC------CCCcEEEEEcCHHHHHHHHHhcC
Q 004133 514 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECM------PFVGIEAVELDLTMLNLAEDYFG 587 (772)
Q Consensus 514 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~------p~~~i~~VEiDp~v~~vA~~~Fg 587 (772)
++..|+..+.+.-+.... -.+..+||.||.|+|.++..|.+.. +..+|++||+++.+++.|++...
T Consensus 60 ~is~P~~~a~~l~~L~~~--------l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~ 131 (223)
T d1r18a_ 60 TISAPHMHAFALEYLRDH--------LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLN 131 (223)
T ss_dssp EECCHHHHHHHHHHTTTT--------CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred eeehhhhHHHHHHHHhhc--------cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhh
Confidence 566677666554322110 1345799999999999888887763 34589999999999999988742
Q ss_pred ---C--CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc
Q 004133 588 ---F--TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC 662 (772)
Q Consensus 588 ---~--~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~ 662 (772)
+ ..-.++.++.+||.+-... ...||+|+++....+
T Consensus 132 ~~~~~~~~~~nv~~~~~d~~~~~~~---------------------------------~~~fD~Iiv~~a~~~------- 171 (223)
T d1r18a_ 132 TDDRSMLDSGQLLIVEGDGRKGYPP---------------------------------NAPYNAIHVGAAAPD------- 171 (223)
T ss_dssp HHHHHHHHHTSEEEEESCGGGCCGG---------------------------------GCSEEEEEECSCBSS-------
T ss_pred hcchhhcCccEEEEEeccccccccc---------------------------------ccceeeEEEEeechh-------
Confidence 1 0125799999999753211 256999999553321
Q ss_pred CCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 663 PAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 663 Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.| +.+.+.|++||.+|+-+.
T Consensus 172 ~p---------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 172 TP---------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp CC---------HHHHHTEEEEEEEEEEES
T ss_pred ch---------HHHHHhcCCCcEEEEEEe
Confidence 12 235678999999998664
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.32 E-value=1.4e-06 Score=89.85 Aligned_cols=109 Identities=14% Similarity=0.148 Sum_probs=82.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|+++.++.+.++ .+|++|++++.-++.|++.. |+ ..++++...|....
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l--~~~v~~~~~d~~~~------------- 123 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEEF------------- 123 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCC--SSCEEEEECCGGGC-------------
T ss_pred CCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhcc--chhhhhhhhccccc-------------
Confidence 5668999999999999999998876 59999999999999998876 55 56899998885321
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCC----CcHHHHHHHHHccCCCcEEEEEecC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f----~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
+.+||.|+. ..... |. ++... .-+.||+.+.+.|+|||.+++..++
T Consensus 124 -----------------------~~~fD~i~sie~~eH-----~~-~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 124 -----------------------DEPVDRIVSLGAFEH-----FA-DGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp -----------------------CCCCSEEEEESCGGG-----TT-CCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred -----------------------ccccceEeechhHHh-----cc-hhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 357999985 22111 10 01000 1268999999999999999998876
Q ss_pred CC
Q 004133 693 RS 694 (772)
Q Consensus 693 ~~ 694 (772)
..
T Consensus 175 ~~ 176 (291)
T d1kpia_ 175 IP 176 (291)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.32 E-value=1.2e-06 Score=90.26 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=82.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++.++.+.++ .+|++|.+++.-++.|++.. .....+++++..+|..++
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--------------- 124 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--------------- 124 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------------
T ss_pred CCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---------------
Confidence 5668999999999999999999875 69999999999999998875 222367899999997433
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
+..||.|+. + +|.+.-..-.-..||+.+.+.|+|||.+++..++
T Consensus 125 ---------------------~~~fD~i~s-i-------~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 125 ---------------------DEPVDRIVS-I-------GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp ---------------------CCCCSEEEE-E-------SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred ---------------------cccccceee-e-------hhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 256998875 1 2211111112368999999999999999988775
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.30 E-value=6.6e-07 Score=90.12 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
..+|||+|||+|.++..++++ +..+++..|.. .+++.+ ....+++|+.+|+.+.. + .+|+++.+.+||.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-----~~~~rv~~~~gD~f~~~--p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-----SGSNNLTYVGGDMFTSI--P--NADAVLLKYILHN 150 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-----CCBTTEEEEECCTTTCC--C--CCSEEEEESCGGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-----cccCceEEEecCcccCC--C--CCcEEEEEeeccc
Confidence 468999999999999999887 44579999984 445433 23468999999998643 3 5799999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccC---eEEEEEEc
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSG---GKFVCLTL 180 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpG---G~~ii~~~ 180 (772)
..+++ ..++|+++++.|+|| |+++++..
T Consensus 151 w~d~~-----~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 151 WTDKD-----CLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp SCHHH-----HHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred CChHH-----HHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 86644 789999999999999 77777763
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.28 E-value=1e-06 Score=89.25 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=77.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..|.+.+|+.+++++|+ |.+++.|++++. ....+|+.++.+|..+. .
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~---~----------- 144 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L----------- 144 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C-----------
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc---c-----------
Confidence 3456899999999999999999999999999998 889999998872 12357899998885431 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~N 689 (772)
...||+|++ ... + -++-+ ..+|+++++.|+|||.|++.
T Consensus 145 ---------------------p~~~D~v~~----~~v---L----h~~~d~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 145 ---------------------PVTADVVLL----SFV---L----LNWSDEDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp ---------------------SCCEEEEEE----ESC---G----GGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cccchhhhc----ccc---c----cccCcHHHHHHHHHHHhhcCCcceeEEE
Confidence 245999987 110 0 11112 46799999999999977764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.28 E-value=5.2e-06 Score=84.48 Aligned_cols=146 Identities=13% Similarity=0.148 Sum_probs=98.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+++.+|+|+|+++..++. +|+.+|++||++|..+++|++.. ++ ..++.++.+|-.+.+...
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~--~~~~~i~~~~~~~~~~~~---------- 176 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEPFKEK---------- 176 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGGGGGG----------
T ss_pred cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCC--CceeEEeecccccccccc----------
Confidence 456899999999999999885 58899999999999999999875 44 568999999987665432
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC-CC-CC-----CcCCcCCCc----HHHHHH-HHHccCCCcEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS-SS-GM-----TCPAADFVE----GSFLLT-VKDALSEQGLF 686 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~-~~-g~-----s~Pp~~f~~----~~fl~~-~~~~L~~~Gil 686 (772)
..+||+|+..- +-- .. .+ .-|..+++. .+|++. +++.|+|+|++
T Consensus 177 ----------------------~~~fDlIVsNP--PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l 232 (271)
T d1nv8a_ 177 ----------------------FASIEMILSNP--PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIV 232 (271)
T ss_dssp ----------------------TTTCCEEEECC--CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEE
T ss_pred ----------------------cCcccEEEEcc--cccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEE
Confidence 25799999742 100 00 00 011111111 234433 56789999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEecCC
Q 004133 687 IVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 687 v~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
++=+- .++ .+.+++.|.++-.++--.+.++++++.+..
T Consensus 233 ~~Eig-~~Q------~~~v~~l~~~~g~~kDl~g~~R~~~~~k~~ 270 (271)
T d1nv8a_ 233 LMEIG-EDQ------VEELKKIVSDTVFLKDSAGKYRFLLLNRRS 270 (271)
T ss_dssp EEECC-TTC------HHHHTTTSTTCEEEECTTSSEEEEEEECCC
T ss_pred EEEEC-HHH------HHHHHHHHHhCCEEeccCCCcEEEEEEEcC
Confidence 98773 222 234556777665555445677888887754
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.27 E-value=1.3e-06 Score=89.62 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhc-----------cCCCCcEEEEeeccCcccccCCCc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----------RDRSDMRWRVMDMTSMQVFMDETF 136 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~-----------~~~~~v~f~~~D~~~l~~~~~~sf 136 (772)
.+.+||.+|+|.|..+..+.+.+..+|+.||+++.+++.+++-.. ...++++++.+|+.+.- -.+++|
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-~~~~~y 150 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-KNNRGF 150 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-HHCCCE
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-hccCCC
Confidence 568999999999999999888777789999999999999976442 13468999999998764 356789
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+|+....-. ...+. .-.-..+++.+++.|+|||++++-.
T Consensus 151 DvIi~D~~~~-~~~~~--~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTDP-VGPAK--VLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECCCC-C-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCCCC-CCCcc--cccCHHHHHhhHhhcCCCceEEEec
Confidence 9998643221 11100 0003579999999999999998754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.5e-06 Score=90.56 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=75.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
+.++||.||+|.|.+++++++..+ .+|++||+++.+..+++..-.....++++++.+|..++ .
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l----~------------ 97 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV----H------------ 97 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS----C------------
T ss_pred CcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHh----c------------
Confidence 457899999999999999999854 48999999999876554332222367899999987654 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
....+||+|+.+....- ....-.-+.++....+.|+|||.++
T Consensus 98 -----------------~~~~~~D~Ivse~~~~~-------~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 98 -----------------LPVEKVDVIISEWMGYF-------LLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp -----------------CSCSCEEEEEECCCBTT-------BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------CccccceEEEEeeeeee-------cccccccHHHHHHHHhcCCCCcEEe
Confidence 12368999998543221 1122233567777888999999987
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.26 E-value=6.9e-07 Score=92.11 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=77.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC---CC-CCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FT-QDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg---~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.||+|+|.++..|.+. +.+|++||+++.|++.|++... .. ...+..+...|.+..-....
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 125 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP------- 125 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-------
T ss_pred cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-------
Confidence 34578999999999999999887 3689999999999999998762 11 01233455555544322221
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-cHHHHHHHHHccCCCcEEEEEecCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
....||+|++-.++- .-+..+....- -..+|+.+.+.|+|||+|++.+...
T Consensus 126 -----------------------~~~~fd~v~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 126 -----------------------AGDGFDAVICLGNSF---AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp -----------------------CTTCEEEEEECSSCG---GGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred -----------------------CCCCceEEEEecCch---hhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 136799998732211 11111111111 2459999999999999999987543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.25 E-value=2.8e-07 Score=93.77 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=80.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.+|+|.|.++..++.. +..+|++||++|..++.|++...+. -+++++++.+|+.++..
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~------------- 171 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG------------- 171 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------------
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-------------
Confidence 35678999999999999888877 4569999999999999999887322 25789999999987622
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...||.|+++. |+ ...+||..+.+.|++||++.+....
T Consensus 172 ---------------------~~~~D~Ii~~~------------p~--~~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 172 ---------------------ENIADRILMGY------------VV--RTHEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp ---------------------CSCEEEEEECC------------CS--SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------------------CCCCCEEEECC------------CC--chHHHHHHHHhhcCCCCEEEEEecc
Confidence 25699999842 11 2367899999999999999765443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=1.5e-06 Score=90.54 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc------cCCCCcEEEEeeccCcccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV------RDRSDMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~------~~~~~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
...+||.+|.|.|..+..+.+. +..+|++||+++.+++.+++.+. ...++++++.+|+.+.-.-.+.+||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 4679999999999999998877 45689999999999999977642 2356899999999885313457899998
Q ss_pred ecccccccccCccchHH-HHHHHHHHHhccccCeEEEEE
Q 004133 141 DKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~-~~~~l~ei~rvLkpGG~~ii~ 178 (772)
...+ +..........+ -..+++.+++.|+|||++++-
T Consensus 157 ~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 157 IDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 5432 111100000001 357999999999999999874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.24 E-value=1.8e-06 Score=86.26 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=67.1
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~ 132 (772)
+...+.+.++. .++++|||+|||+|.++..|++.+. +|++||+++.+++.++++. ...++++++.+|+.+++ ++
T Consensus 9 i~~~iv~~~~~---~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~-~~~~n~~i~~~D~l~~~-~~ 82 (235)
T d1qama_ 9 NIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKL-VDHDNFQVLNKDILQFK-FP 82 (235)
T ss_dssp HHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHT-TTCCSEEEECCCGGGCC-CC
T ss_pred HHHHHHHhcCC---CCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHh-hcccchhhhhhhhhhcc-cc
Confidence 33444454443 6899999999999999999999875 7999999999999998876 34579999999999988 66
Q ss_pred CCCccEEEecc
Q 004133 133 DETFDVILDKG 143 (772)
Q Consensus 133 ~~sfDvVi~~~ 143 (772)
......|+++-
T Consensus 83 ~~~~~~vv~NL 93 (235)
T d1qama_ 83 KNQSYKIFGNI 93 (235)
T ss_dssp SSCCCEEEEEC
T ss_pred ccccceeeeee
Confidence 55444555443
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=1.2e-06 Score=83.38 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=72.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.+|+|.|++...+.... .++++||+||.++++|++.+ |+ + -+++..|+-.|+.....
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~--~--~~v~~~~~d~~~~~~~~------- 106 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGL--G--ARVVALPVEVFLPEAKA------- 106 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTC--C--CEEECSCHHHHHHHHHH-------
T ss_pred cCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhcc--c--cceeeeehhcccccccc-------
Confidence 345799999999999988766653 58999999999999999886 44 2 36777888887766431
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHH--HHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTV--KDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~--~~~L~~~Gilv~Nl 690 (772)
...+||+|++|- |-..-..+.+..+ ...|+|+|++++--
T Consensus 107 ----------------------~~~~fD~If~DP------------PY~~~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 107 ----------------------QGERFTVAFMAP------------PYAMDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp ----------------------TTCCEEEEEECC------------CTTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ----------------------cCCccceeEEcc------------ccccCHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 146799999963 2111112233333 34689999999754
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=1.4e-06 Score=83.75 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=79.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+++|+|++......... .+|+.||+|+..++++++........+.+++.+|+.+|++..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~-------------- 108 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQK-------------- 108 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSC--------------
T ss_pred hhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccc--------------
Confidence 36899999999999886555533 389999999999999998864323356899999999998653
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHH--ccCCCcEEEEEe
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNL 690 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~--~L~~~Gilv~Nl 690 (772)
..+||+|++|- + + ..-.-...+..+.+ .|+++|++++-.
T Consensus 109 ------------------~~~fDlIf~DP--P-Y--------~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 109 ------------------GTPHNIVFVDP--P-F--------RRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp ------------------CCCEEEEEECC--S-S--------STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ------------------ccccCEEEEcC--c-c--------ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 36799999963 1 0 12234667777765 599999999854
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.20 E-value=1.8e-06 Score=82.92 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=80.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.++.|+|++......... .+|+.||.|+..++++++++. +....+++++.+|+.++++....
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~---------- 109 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------- 109 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH----------
T ss_pred CCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc----------
Confidence 457899999999999886665532 389999999999999999872 12356899999999999987541
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-CCcHHHHHHHHH--ccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKD--ALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~-f~~~~fl~~~~~--~L~~~Gilv~Nl 690 (772)
.+.+||+|++|- |-. -...+.|+.+.+ .|+++|++++-.
T Consensus 110 -------------------~~~~fDlIflDP------------PY~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 110 -------------------EKLQFDLVLLDP------------PYAKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp -------------------TTCCEEEEEECC------------CGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -------------------cCCCcceEEech------------hhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 146799999953 211 123566777654 589999999754
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=4.1e-06 Score=84.44 Aligned_cols=111 Identities=8% Similarity=-0.001 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcc-----cccCCCccEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQ-----VFMDETFDVI 139 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~-----~~~~~sfDvV 139 (772)
+..+|||+|||+|..+..|+.. ...+++|+|+|+.+++.|+++...... ++.+...+..+.- ...+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 4569999999999999998887 234799999999999999888765543 4666665544321 1245689999
Q ss_pred EecccccccccCc---------------------cc-------hHHHHHHHHHHHhccccCeEEEEE
Q 004133 140 LDKGGLDALMEPE---------------------LG-------HKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 140 i~~~~l~~l~~~~---------------------~~-------~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+++-.+..-.... .. ...+.+++++..+.++..|.|.+.
T Consensus 141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ 207 (250)
T d2h00a1 141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCM 207 (250)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEE
T ss_pred EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEE
Confidence 9988776422110 00 123778888889999999988654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.18 E-value=4.5e-06 Score=81.65 Aligned_cols=116 Identities=22% Similarity=0.294 Sum_probs=83.0
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l 128 (772)
..+..++..++.. .++.+|||+|||+|.++..+.+. ....++|+|+++.++.. .....+.++|....
T Consensus 5 ~~i~~~m~~l~~~---~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~--------~~~~~~~~~~~~~~ 73 (223)
T d2ih2a1 5 PEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL--------PPWAEGILADFLLW 73 (223)
T ss_dssp HHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC--------CTTEEEEESCGGGC
T ss_pred HHHHHHHHHhcCC---CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh--------cccceeeeeehhcc
Confidence 4667777777765 57889999999999999888765 23469999999855432 23457788888776
Q ss_pred ccccCCCccEEEecccccccccCccc----------------------hHHHHHHHHHHHhccccCeEEEEEE
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELG----------------------HKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~----------------------~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. ....||+|+++..+......... ......++..+.+.|++||++.++.
T Consensus 74 ~--~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 74 E--PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp C--CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 5 56789999988776433221100 0024466788999999999988876
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.18 E-value=1.5e-06 Score=84.23 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=85.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH---HHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF---VREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~---l~~~~~~~~~~~~ 617 (772)
.....++.+++|+|..+..+.+.+|+.+|.++|.||.+++.|++.+.- ...|++++.++..+. +....
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~-~~~r~~~~~~~f~~~~~~~~~~~-------- 92 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE-FSDRVSLFKVSYREADFLLKTLG-------- 92 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG-GTTTEEEEECCGGGHHHHHHHTT--------
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc-ccccccchhHHHhhHHHHHHHcC--------
Confidence 345689999999999999999988999999999999999999988732 246899999876553 33322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-CcHHHHHHHHHccCCCcEEEEEe
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...+|.|++|+--+.+ -+..+...| ...++|..+.+.|+++|.+++..
T Consensus 93 -----------------------~~~vdgIl~DlGvSs~--Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 93 -----------------------IEKVDGILMDLGVSTY--QLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp -----------------------CSCEEEEEEECSCCHH--HHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred -----------------------CCCcceeeeccchhHh--hhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 3679999999732210 000011122 24678999999999999988644
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=3.9e-06 Score=87.97 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=75.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
+..+||.||+|.|.|++++++... .+|++||.++ +++.|++.. ++ .++++++.+|..+. .
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~~--~~~i~~i~~~~~~l----~--------- 100 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNGF--SDKITLLRGKLEDV----H--------- 100 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTS----C---------
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhCc--cccceEEEeehhhc----c---------
Confidence 457899999999999999988753 4899999998 556776654 43 67899999987543 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
....+||+|+......- ....-.-..++..+.+.|+|||+++
T Consensus 101 --------------------~~~~~~D~i~se~~~~~-------~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 101 --------------------LPFPKVDIIISEWMGYF-------LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp --------------------CSSSCEEEEEECCCBTT-------BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------CcccceeEEEEEeccee-------eccchhHHHHHHHHHhccCCCeEEE
Confidence 12478999998653321 1222234678888899999999986
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.16 E-value=4.6e-06 Score=79.93 Aligned_cols=124 Identities=15% Similarity=0.224 Sum_probs=93.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc--
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-- 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-- 129 (772)
.+...+..++.. .+++.++|..||.|..+..+.+.+. +|+|+|..+.+++.++++. ..++.+++.+..++.
T Consensus 5 Vll~Evl~~l~~---~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~---~~~~~~~~~~f~~~~~~ 77 (182)
T d1wg8a2 5 VLYQEALDLLAV---RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH---LPGLTVVQGNFRHLKRH 77 (182)
T ss_dssp TTHHHHHHHHTC---CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---CTTEEEEESCGGGHHHH
T ss_pred hHHHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc---ccceeEeehHHHHHHHH
Confidence 344555666654 6899999999999999999988754 7999999999999887653 457999999988865
Q ss_pred --cccCCCccEEEecccccc--cccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 130 --VFMDETFDVILDKGGLDA--LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 130 --~~~~~sfDvVi~~~~l~~--l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.+..+.+|.|+....+.. +.++..+.......|+....+|++||++++++|..
T Consensus 78 l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 78 LAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 234578997774333322 22333333446778999999999999999999864
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.16 E-value=2.4e-06 Score=89.10 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
+..+||.||+|.|.+++++++..+ .+|++||+++.+..+ ++.. ++ .++++++.+|..+. .
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a-~~~~~~n~~--~~~v~~~~~~~~~~----~--------- 95 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYA-VKIVKANKL--DHVVTIIKGKVEEV----E--------- 95 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHH-HHHHHHTTC--TTTEEEEESCTTTC----C---------
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhh-hhHHHHhCC--ccccceEeccHHHc----c---------
Confidence 346899999999999999998754 389999999976544 4433 44 57899999987653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
....++|+|+.+....- ....-.-+.++..+.+.|+|||.++
T Consensus 96 --------------------~~~~~~D~ivs~~~~~~-------l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 96 --------------------LPVEKVDIIISEWMGYC-------LFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp --------------------CSSSCEEEEEECCCBBT-------BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred --------------------cccceeEEEeeeeeeee-------eccHHHHHHHHHHHHhcCCCCeEEE
Confidence 12367999998643221 1222233788999999999999987
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.15 E-value=5e-06 Score=79.76 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEEeeccCcc--cccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ--VFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~~D~~~l~--~~~~~sfDvVi~~ 142 (772)
.+.+|||+.||+|.++.+.+.+|...|+.||.+..+++..+++...-. ....+...|+.+.- ......||+|+..
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 467999999999999999999999999999999999998887764332 23566667665422 1335679999875
Q ss_pred ccccccccCccchHHHHHHHHHHHh--ccccCeEEEEEEc
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTL 180 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~r--vLkpGG~~ii~~~ 180 (772)
-.... ......++.+.. +|+++|.+++.+-
T Consensus 123 PPY~~--------~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHF--------NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSS--------CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhh--------hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 54432 125677777754 7999999888753
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.08 E-value=5.9e-06 Score=85.04 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
...+||.+|.|.|..+..+.+. +..+|++||+++.+++.+++-... ..++++++.+|+...-.-..+.||+|+.
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 4679999999999999999887 456899999999999998765421 3578999999998753234678999996
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+-....... .-.-..+++.+++.|+|||++++-.-+
T Consensus 169 D~~dp~~~~~~--~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 169 DSTDPTAGQGG--HLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EC------------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cCCCCCcCchh--hhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 43211100000 000368999999999999999886533
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=8.5e-06 Score=77.90 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
+++.+||||||++|.++..+.+. ....++++|+.+ ....+++.++++|+.+.. ......||
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~----------~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP----------MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC----------CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc----------ccccCCceEeecccccchhhhhhhhhccCccee
Confidence 57899999999999999998875 346799999876 123568899999998743 13457899
Q ss_pred EEEecccccccccCccc----hHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 138 VILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+|++.+..+.--....+ ..+....+.-+.++|++||.|++=.|....
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~ 141 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence 99998877653321111 134677888889999999999998887544
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.07 E-value=3.8e-06 Score=84.34 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
...+|||||||+|.++..+++. +..++++.|+.+. ++. ....+++++..+|+.+ + .|. .|+++...+++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~-----~~~~~r~~~~~~d~~~-~-~P~--ad~~~l~~vlh 150 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IED-----APSYPGVEHVGGDMFV-S-IPK--ADAVFMKWICH 150 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTT-----CCCCTTEEEEECCTTT-C-CCC--CSCEECSSSST
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhh-----cccCCceEEecccccc-c-CCC--cceEEEEEEee
Confidence 3578999999999999999987 3347999999763 322 2344689999999976 3 343 57778888888
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
...+++ ...+|+++++.|+|||+++++..
T Consensus 151 ~~~d~~-----~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 151 DWSDEH-----CLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp TSCHHH-----HHHHHHHHHHHCCSSSCEEEEEC
T ss_pred cCCHHH-----HHHHHHHHHHhcCCCceEEEEEE
Confidence 775533 78999999999999999998864
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.03 E-value=6.4e-06 Score=81.69 Aligned_cols=102 Identities=14% Similarity=-0.006 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-cc-----ccCCCcc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QV-----FMDETFD 137 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~-----~~~~sfD 137 (772)
...+|||+|+++|.-+..+++. + -.+|+.+|.++...+.|++...+.+ ..++++++|+.+. +. ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 4689999999999999999875 2 3479999999999999988876544 3699999999763 21 1356899
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+|+..+ -.. .+..+++.+.++|+|||.+++-.
T Consensus 139 ~iFiDa----~k~------~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDA----DKD------NYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECS----CST------THHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEecc----chh------hhHHHHHHHHhhcCCCcEEEEcc
Confidence 998643 211 16789999999999999998864
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=1.2e-05 Score=82.06 Aligned_cols=109 Identities=20% Similarity=0.219 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~-----~~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
...+||.+|-|.|..+..+.+. +..+|+.+|+++.+++.+++-.. ...++++++.+|+...-.-.+++||+|+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~ 154 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence 5679999999999999999886 56789999999999999976542 24578999999998743134678999986
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..+-.. ..+. .-.-..+++.+++.|+|||+++.-.
T Consensus 155 D~~~p~-~~~~--~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 155 DSTEPV-GPAV--NLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp SCSSCC-SCCC--CCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCC-Ccch--hhccHHHHHHHHhhcCCCceEEEec
Confidence 543211 1100 0003589999999999999999764
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.01 E-value=4.2e-07 Score=91.53 Aligned_cols=89 Identities=11% Similarity=0.158 Sum_probs=71.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
..+...+.+.+.. .++++|||||||+|.++..|++.+. +|++||+++.+++.+++++ ...++++++++|+.+++
T Consensus 15 ~~ii~kIv~~~~~---~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~-~~~~n~~ii~~D~l~~~- 88 (245)
T d1yuba_ 15 EKVLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKL-KLNTRVTLIHQDILQFQ- 88 (245)
T ss_dssp TTTHHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTT-TTCSEEEECCSCCTTTT-
T ss_pred HHHHHHHHHhcCC---CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhh-hhccchhhhhhhhhccc-
Confidence 3455556666654 6789999999999999999999875 7999999999988776655 23468999999999998
Q ss_pred ccCCCccEEEecccc
Q 004133 131 FMDETFDVILDKGGL 145 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l 145 (772)
++...++.|+++-..
T Consensus 89 ~~~~~~~~vv~NLPY 103 (245)
T d1yuba_ 89 FPNKQRYKIVGNIPY 103 (245)
T ss_dssp CCCSSEEEEEEECCS
T ss_pred cccceeeeEeeeeeh
Confidence 887777777765543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.00 E-value=1.4e-05 Score=82.07 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeeccCcc-cccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQ-VFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~-----~~~~~v~f~~~D~~~l~-~~~~~sfDvVi 140 (772)
...+||-+|-|.|..+..+.+. +..+|+.+|+++.+++.+++-.. ...++++++..|+...- ...+++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 4579999999999999999887 55689999999999999976431 23578999999987643 13456899998
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
...+ +-...+ ..-.-..+++.+++.|+|||++++-.-
T Consensus 160 ~D~~-dp~~~~--~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 160 VDSS-DPIGPA--KELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp ECCC-CTTSGG--GGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcc--hhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 5332 111000 001136799999999999999998653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.2e-05 Score=82.37 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~-----~~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
.+.+||-+|-|.|..+..+.+. +..+|+.+|+.+.+++.+++-+. ...++++++.+|+...-.-..++||+|+.
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 5679999999999999999887 56789999999999999976542 23578999999988743134578999996
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+ +-...+. .-.-..+++.+++.|+|||++++-.-+
T Consensus 158 D~~-~p~~~~~--~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 158 DSS-DPMGPAE--SLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp ECC--------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCC-CCCCccc--ccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 432 1111100 001357899999999999999986543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.92 E-value=1.2e-05 Score=83.07 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
...+||.+|-|.|..+..+.+. +..+|+.+|+++.+++.+++-... ..++++++.+|+.+.-.-..++||+|+.
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 4679999999999999999887 456899999999999999765421 3468999999998743234678999996
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..+-. ...+ ..-.-..+++.+++.|+|||+++.-.
T Consensus 186 D~~dp-~~~~--~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 186 DSSDP-VGPA--ESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp CCC----------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCC-CCcc--hhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 43321 1110 00114688999999999999999864
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=7.9e-05 Score=78.45 Aligned_cols=138 Identities=10% Similarity=0.174 Sum_probs=91.8
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc--
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-- 129 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-- 129 (772)
+...+.+++.. .++.+|||+-||.|.++..|++.+ .+|+|+|.++.+++.|++++...+ .+++|+.+|+.+.-
T Consensus 200 l~~~v~~~~~~---~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~ 275 (358)
T d1uwva2 200 MVARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 275 (358)
T ss_dssp HHHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred HHHHHHHhhcc---CCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence 33445555554 567899999999999999998864 579999999999999988765544 47999999987632
Q ss_pred -cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 130 -VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 130 -~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
......||+|+.. +|..+ ..+.++.+.+. +|. +++.++.....+.+.+-.....+|.+......+
T Consensus 276 ~~~~~~~~d~vilD-------PPR~G---~~~~~~~l~~~-~~~-~ivYVSCnp~TlaRDl~~l~~~gy~l~~i~~~D 341 (358)
T d1uwva2 276 QPWAKNGFDKVLLD-------PARAG---AAGVMQQIIKL-EPI-RIVYVSCNPATLARDSEALLKAGYTIARLAMLD 341 (358)
T ss_dssp SGGGTTCCSEEEEC-------CCTTC---CHHHHHHHHHH-CCS-EEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred hhhhhccCceEEeC-------CCCcc---HHHHHHHHHHc-CCC-EEEEEeCCHHHHHHHHHHHHHCCCeEeEEEEEe
Confidence 1234678988752 22222 23455656553 443 566666665555554433334467666555444
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=5.4e-05 Score=75.96 Aligned_cols=63 Identities=19% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIK 603 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~ 603 (772)
....++|.||.|+|+++..|....|+.+++++|+|+..+++|++.... .-..|+.++..+...
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~ 123 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKT 123 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTC
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHH
Confidence 456799999999999999999999999999999999999999998722 126788888776443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.81 E-value=0.00022 Score=76.97 Aligned_cols=175 Identities=13% Similarity=0.143 Sum_probs=115.1
Q ss_pred cccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc----C----------CCeEEEEeCCHHHHHHHHH
Q 004133 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G----------FHGITNVDFSKVVISDMLR 109 (772)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~----g----------~~~V~gvDiS~~~I~~a~~ 109 (772)
-++| .+..+..++..++.. .++.+|||++||+|.+...+.+. + ...++|+|+++.+...++-
T Consensus 142 G~f~-TP~~Iv~~mv~ll~~---~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~ 217 (425)
T d2okca1 142 GQYF-TPRPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM 217 (425)
T ss_dssp GGGC-CCHHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred hhhc-cchhhhHhhheeccC---cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHh
Confidence 3444 446788888888875 57889999999999999877663 1 1249999999999988865
Q ss_pred HhccCC---CCcEEEEeeccCcccccCCCccEEEecccccccccCccc----------hHHHHHHHHHHHhccccCeEEE
Q 004133 110 RNVRDR---SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELG----------HKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 110 ~~~~~~---~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~----------~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+..-++ ....+...|..+.. ....||+|+++-.+......... ......+++.+.+.|++||++.
T Consensus 218 n~~l~g~~~~~~~i~~~d~l~~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 295 (425)
T d2okca1 218 NLYLHGIGTDRSPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 295 (425)
T ss_dssp HHHHTTCCSSCCSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhhcCCccccceeecCchhhhh--cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEE
Confidence 543222 24567788877654 67889999998887533221100 0113468999999999999988
Q ss_pred EEEcCc----h----hhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCCc
Q 004133 177 CLTLAE----S----HVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSS 227 (772)
Q Consensus 177 i~~~~~----~----~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~~ 227 (772)
++.-.. . .+++.++.. .+...+..++..-=.....+..+.+++|.+..
T Consensus 296 iI~p~~~L~~~~~~~~iR~~Ll~~---~~i~aIi~LP~~~F~~t~v~t~Ilil~K~k~~ 351 (425)
T d2okca1 296 VVLPDNVLFEAGAGETIRKRLLQD---FNLHTILRLPTGIFYAQGVKANVLFFSKGQPT 351 (425)
T ss_dssp EEEEHHHHHCSTHHHHHHHHHHHH---EEEEEEEECCSSSSSSTTCCEEEEEEEESSCC
T ss_pred EEechHHhhhhhhHHHHHHHHHHh---cchhHhhcCCcccccCCCCCeEEEEEECCCCC
Confidence 775321 1 122233332 34556666653211235677888888886643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.78 E-value=8.3e-05 Score=72.04 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=49.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
+..+||.+|+|+|+++..+... +..+|++||+|+..++.|++.... .+.+.+++.+|..++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~-~~~~~~~~~~d~~~~ 106 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGE-FKGKFKVFIGDVSEF 106 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGG-GTTSEEEEESCGGGC
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHH-cCCCceEEECchhhh
Confidence 4578999999999998877655 445999999999999999998643 245689999997553
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=4.5e-05 Score=79.65 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=77.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHh----------cCCCCCCCeEEEEccHHHHH--Hhh
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY----------FGFTQDKSLKVHITDGIKFV--REM 608 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~----------Fg~~~~~rl~v~i~Dg~~~l--~~~ 608 (772)
.....||.||+|.|.+...++...+..++.+||++|.+++.|++. +|. ...+++++.+|..+.- ...
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~-~~~~i~~~~gd~~~~~~~~~~ 228 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLERGDFLSEEWRERI 228 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc-cCCceEEEECccccccccccc
Confidence 445689999999999999999888887899999999999999753 355 3467999999986531 111
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 609 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...|+|++- +--. .+.+ ...|..+.+.|+|||.+|.
T Consensus 229 ---------------------------------~~advi~~~--~~~f-------~~~~--~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 229 ---------------------------------ANTSVIFVN--NFAF-------GPEV--DHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp ---------------------------------HHCSEEEEC--CTTT-------CHHH--HHHHHHHHTTCCTTCEEEE
T ss_pred ---------------------------------CcceEEEEc--ceec-------chHH--HHHHHHHHHhCCCCcEEEE
Confidence 236888872 1100 1111 4678888999999999986
Q ss_pred E
Q 004133 689 N 689 (772)
Q Consensus 689 N 689 (772)
.
T Consensus 265 ~ 265 (328)
T d1nw3a_ 265 S 265 (328)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=0.00017 Score=70.12 Aligned_cols=99 Identities=13% Similarity=0.064 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|+|.|--+..++=. +-.+++.+|.+..=+...++....-+ .++++++..++++. .+.+||+|++..+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--~~~~fD~V~sRA~~ 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAFA 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCSS
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc--cccccceehhhhhc
Confidence 4579999999999999888765 44589999999988887766554444 47999999999876 56789999875543
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+ ...+++-+...+++||++++.-
T Consensus 143 ----~-------~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 ----S-------LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----S-------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----C-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 2 5689999999999999998875
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.70 E-value=3.1e-05 Score=74.84 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=46.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 603 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~ 603 (772)
..++||.+|+|+|.++..+....+ .+|++||+|+..+++|++.. ++++++.+|..+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~ 103 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSE 103 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGG
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcc-----ccccEEEEehhh
Confidence 357999999999999877666543 48999999999999999986 368999999643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.56 E-value=0.00012 Score=69.66 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=79.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..++|.+-.|+|++..-..... ..+++.||.|+..+++.++.+ ++ .+....++..|..+++....
T Consensus 44 ~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~-~~~~~~~~~~d~~~~l~~~~---------- 111 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKC-SSEQAEVINQSSLDFLKQPQ---------- 111 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTC-CTTTEEEECSCHHHHTTSCC----------
T ss_pred cceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcc-cccccccccccccccccccc----------
Confidence 3589999999999988776664 349999999999999999886 43 35578899999999977643
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-CCcHHHHHHHHH--ccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKD--ALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~-f~~~~fl~~~~~--~L~~~Gilv~Nl~ 691 (772)
...+||+|++|- |-. -.....|+.+.+ .|+++|++++-..
T Consensus 112 --------------------~~~~fDlIFlDP------------PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 112 --------------------NQPHFDVVFLDP------------PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp --------------------SSCCEEEEEECC------------CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred --------------------cCCcccEEEech------------hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 135799999952 222 134567777765 5899999998654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=0.00016 Score=77.13 Aligned_cols=62 Identities=15% Similarity=-0.006 Sum_probs=49.0
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHh
Q 004133 513 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 513 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~ 585 (772)
+.|..+...-|+.-+.+ ....++|.||+|.|.++..++..++..++++||+++.+++.|++.
T Consensus 198 GEl~~~~i~~Il~~l~L-----------kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~ 259 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQL-----------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259 (406)
T ss_dssp CCBCHHHHHHHHHHTTC-----------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCC-----------CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 45556666666644332 445689999999999999999988877999999999999999864
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.46 E-value=0.00017 Score=76.45 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=81.9
Q ss_pred CCCeEEEEcccccHHHH-HHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC---------------CCCCeEEEEccHHHHH
Q 004133 542 KSVKAVVIGLGAGLLPM-FLHECMPFVGIEAVELDLTMLNLAEDYFGFT---------------QDKSLKVHITDGIKFV 605 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~-~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~---------------~~~rl~v~i~Dg~~~l 605 (772)
++.+||....|+|.... ++.+. +..+|+++|+||..++.+++...+. ....+.+...|+..++
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 46789999999998777 44444 5569999999999999999987221 1346889999999998
Q ss_pred HhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcE
Q 004133 606 REMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 685 (772)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gi 685 (772)
.+.. .+||+|.+|-+.+ | ..||+.+.+.++.+|+
T Consensus 124 ~~~~--------------------------------~~fDvIDiDPfGs--------~------~pfldsAi~a~~~~Gl 157 (375)
T d2dula1 124 AERH--------------------------------RYFHFIDLDPFGS--------P------MEFLDTALRSAKRRGI 157 (375)
T ss_dssp HHST--------------------------------TCEEEEEECCSSC--------C------HHHHHHHHHHEEEEEE
T ss_pred Hhhc--------------------------------CcCCcccCCCCCC--------c------HHHHHHHHHHhccCCE
Confidence 7743 6799999987654 3 7799999999999999
Q ss_pred EEEE
Q 004133 686 FIVN 689 (772)
Q Consensus 686 lv~N 689 (772)
|.+-
T Consensus 158 l~vT 161 (375)
T d2dula1 158 LGVT 161 (375)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9975
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.45 E-value=0.00014 Score=71.92 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=75.8
Q ss_pred Cccccccch----hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHhc
Q 004133 42 DSFEWYAEW----PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV 112 (772)
Q Consensus 42 ~~~eW~~~~----~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~----g-~~~V~gvDiS~~~I~~a~~~~~ 112 (772)
..+.|.+.. +.-...+++++.. ..+.+|||+|++.|.-+..+++. + -.+|+++|+.+..... ..
T Consensus 53 ~~~~w~G~p~~k~p~d~~~~~eli~~---~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~----~~ 125 (232)
T d2bm8a1 53 SPYQWRGLRMLKDPDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI----PA 125 (232)
T ss_dssp SCCEETTEECCSCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC----CG
T ss_pred cCccccceecccCHHHHHHHHHHHHH---hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh----hh
Confidence 346676652 3333445556554 34679999999999876655432 3 3579999998743321 12
Q ss_pred cCCCCcEEEEeeccCcc---cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 113 RDRSDMRWRVMDMTSMQ---VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 113 ~~~~~v~f~~~D~~~l~---~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
....++++.++|..+.. .+....+|+|+.-+. |.... ...-+ +...+|++||++++-+.
T Consensus 126 ~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~-H~~~~-------v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 126 SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-HANTF-------NIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-CSSHH-------HHHHH-HHHHTCCTTCEEEECSC
T ss_pred ccccceeeeecccccHHHHHHHHhcCCCEEEEcCC-cchHH-------HHHHH-HHhcccCcCCEEEEEcC
Confidence 23468999999987754 233456787664432 22111 11223 35689999999999764
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.44 E-value=0.00019 Score=71.66 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcc-cCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeE
Q 004133 517 SSYHMGIISGFTLISSYLESVAS-VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK 595 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~-~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~ 595 (772)
..|.++|.+.-......+..... -....+||.||+|.|.+...+.+.+|+++++++|+ |.|++.+ + ..+|++
T Consensus 55 ~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~--~~~ri~ 127 (244)
T d1fp1d2 55 QIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA----P--PLSGIE 127 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C--CCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc----C--CCCCeE
Confidence 44778886433322222221112 24457899999999999999999999999999998 5554322 2 357999
Q ss_pred EEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHH
Q 004133 596 VHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLT 675 (772)
Q Consensus 596 v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~ 675 (772)
++.+|..+ .. ...|++++=---.+ . |.. -....|++
T Consensus 128 ~~~gd~~~---~~---------------------------------p~~D~~~l~~vLh~----~--~de--~~~~iL~~ 163 (244)
T d1fp1d2 128 HVGGDMFA---SV---------------------------------PQGDAMILKAVCHN----W--SDE--KCIEFLSN 163 (244)
T ss_dssp EEECCTTT---CC---------------------------------CCEEEEEEESSGGG----S--CHH--HHHHHHHH
T ss_pred EecCCccc---cc---------------------------------ccceEEEEehhhhh----C--CHH--HHHHHHHH
Confidence 99999542 11 24588876110000 0 000 12467999
Q ss_pred HHHccCCCcEEEEE
Q 004133 676 VKDALSEQGLFIVN 689 (772)
Q Consensus 676 ~~~~L~~~Gilv~N 689 (772)
+++.|+|||.+++.
T Consensus 164 ~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 164 CHKALSPNGKVIIV 177 (244)
T ss_dssp HHHHEEEEEEEEEE
T ss_pred HHHHcCCCcEEEEE
Confidence 99999999977654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.44 E-value=7.9e-05 Score=74.03 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=53.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
....+||.||.|.|+|+..|.+.. .+|++||+|+.+++..++.|. +.++++++.+|++++
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQF 79 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGC
T ss_pred CCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhc
Confidence 456789999999999999999874 489999999999999998874 457999999999886
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=9.4e-05 Score=74.19 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=60.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
.+...+...+.. .+++.|||+|||+|.++..|++.+. +|++||+++.+++..+++. ...++++++.+|+.++.
T Consensus 8 ~~~~~Iv~~~~~---~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~-~~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 8 FVIDSIVSAINP---QKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHP-FLGPKLTIYQQDAMTFN 80 (252)
T ss_dssp HHHHHHHHHHCC---CTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCT-TTGGGEEEECSCGGGCC
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHh-hhccchhHHhhhhhhhc
Confidence 445556667654 5789999999999999999999875 6999999999999887654 23468999999999876
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.40 E-value=0.00041 Score=71.68 Aligned_cols=122 Identities=16% Similarity=0.048 Sum_probs=86.6
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcccccC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~~ 133 (772)
....+.. .++.+|||++||.|.=+..++.. +-..+++.|.++.-+..++++..+. ..++.+...|...++ ..+
T Consensus 108 ~~~~l~~---~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~-~~~ 183 (313)
T d1ixka_ 108 PPVALDP---KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-ELN 183 (313)
T ss_dssp HHHHHCC---CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GGC
T ss_pred hhhcccC---CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc-ccc
Confidence 3444544 68999999999999988888765 2346999999999999887766443 346777778888877 667
Q ss_pred CCccEEEe------cccccccccCc--cch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 134 ETFDVILD------KGGLDALMEPE--LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 134 ~sfDvVi~------~~~l~~l~~~~--~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
..||.|+. .|++..-.... ... ..-.++|..+.+.|||||+++.+|.+-
T Consensus 184 ~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 184 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 89999984 22222111100 001 125688999999999999999988764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=1.3e-05 Score=80.06 Aligned_cols=138 Identities=13% Similarity=0.075 Sum_probs=75.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcc------
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSAT------ 614 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~------ 614 (772)
.+..+||.||+|.|.++.++.... ..+|+++|+++.+++.|+++..- ....+...+..+++.........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKK---EPGAYDWTPAVKFACELEGNSGRWEEKEE 125 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHT---CTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhh---ccccchhhhHHHHHHHhccccchHHHHHH
Confidence 345689999999998876665543 34799999999999999998732 22233333444444432210000
Q ss_pred ---cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 615 ---DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 615 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+..... .....+... .......||+|+.-. .-.. + ++..---..+++++.+.|+|||.|++..+
T Consensus 126 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~fD~i~~~~-~l~~---~--~~~~~~~~~~l~~i~~~LkpGG~li~~~~ 194 (257)
T d2a14a1 126 KLRAAVKRVLK----CDVHLGNPL-APAVLPLADCVLTLL-AMEC---A--CCSLDAYRAALCNLASLLKPGGHLVTTVT 194 (257)
T ss_dssp HHHHHEEEEEE----CCTTSSSTT-TTCCCCCEEEEEEES-CHHH---H--CSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhhhhcccc----ccccccccc-ccccCCcccEEeehh-hHHH---h--cccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence 00000000 000000000 122356799998621 1000 0 00000114689999999999999998665
Q ss_pred CC
Q 004133 692 SR 693 (772)
Q Consensus 692 ~~ 693 (772)
..
T Consensus 195 ~~ 196 (257)
T d2a14a1 195 LR 196 (257)
T ss_dssp SS
T ss_pred cc
Confidence 44
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.00035 Score=70.81 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=67.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~ 129 (772)
.+...+.+.++. .+++.|||+|||+|.++..|++.+. +|+++++++.+++..++++.... .+++++.+|+.+..
T Consensus 8 ~i~~kIv~~~~~---~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~ 83 (278)
T d1zq9a1 8 LIINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD 83 (278)
T ss_dssp HHHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhCC---CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence 444455566554 5789999999999999999999875 79999999999999988774432 47899999998876
Q ss_pred cccCCCccEEEeccc
Q 004133 130 VFMDETFDVILDKGG 144 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~ 144 (772)
++ .++.|+++-.
T Consensus 84 -~~--~~~~vV~NLP 95 (278)
T d1zq9a1 84 -LP--FFDTCVANLP 95 (278)
T ss_dssp -CC--CCSEEEEECC
T ss_pred -hh--hhhhhhcchH
Confidence 44 3566776543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00093 Score=73.83 Aligned_cols=175 Identities=9% Similarity=0.073 Sum_probs=109.0
Q ss_pred cccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc----C---------------CCeEEEEeCCHHHH
Q 004133 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----G---------------FHGITNVDFSKVVI 104 (772)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~----g---------------~~~V~gvDiS~~~I 104 (772)
-++|. +..+..++..++.. .++.+|+|++||+|.+....++. . ...++|+|+++.+.
T Consensus 144 GqfyT-P~~Iv~~mv~ll~~---~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~ 219 (524)
T d2ar0a1 144 GQYFT-PRPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 219 (524)
T ss_dssp -CCCC-CHHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred chhcc-ccchhHhhhhcccC---ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH
Confidence 34444 45777888888865 57889999999999999766552 1 12589999999999
Q ss_pred HHHHHHhccCCCC------cEEEEeeccCcccccCCCccEEEecccccccccCcc-------chHHHHHHHHHHHhcccc
Q 004133 105 SDMLRRNVRDRSD------MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPEL-------GHKLGNQYLSEVKRLLKS 171 (772)
Q Consensus 105 ~~a~~~~~~~~~~------v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~-------~~~~~~~~l~ei~rvLkp 171 (772)
..++-++.-++.. -.+...|....+......||+|+++-.+..-...+. ....--.+++.+.+.|++
T Consensus 220 ~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~ 299 (524)
T d2ar0a1 220 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 299 (524)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc
Confidence 8876554333221 234444444322234568999999887743221110 001133589999999999
Q ss_pred CeEEEEEEcC-----ch---hhhhcccccccCCcEEEEEEcCC-CCCCCCCcceEEEEEEecCC
Q 004133 172 GGKFVCLTLA-----ES---HVLGLLFPKFRFGWKMSVHAIPQ-KSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 172 GG~~ii~~~~-----~~---~~~~~l~~~~~~~w~~~~~~~~~-~~~~~~~l~~f~~~~~K~~~ 226 (772)
||++.++.-. .. .+++.|+.. .+...+..++. .. .....+..+.+++|.+.
T Consensus 300 gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~---~~i~aII~LP~~~F-~~t~i~t~Il~l~K~k~ 359 (524)
T d2ar0a1 300 GGRAAVVVPDNVLFEGGKGTDIRRDLMDK---CHLHTILRLPTGIF-YAQGVKTNVLFFTKGTV 359 (524)
T ss_dssp EEEEEEEEEHHHHHCCTHHHHHHHHHHHH---EEEEEEEECCSSCS-SSCSCCEEEEEEEEBCS
T ss_pred cCcEEEEEehHHhhhhhhhHHHHHHHHHc---CCceEEEECCCCcC-CCCCCCeEEEEEECCCC
Confidence 9998877532 11 123333333 35556666652 22 23567888888888764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.37 E-value=0.0001 Score=72.89 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=65.0
Q ss_pred CCCCeEEEEcccccHHHHHHHH----hCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHH--HHHhhcccCcc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHE----CMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSAT 614 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~----~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~--~l~~~~~~~~~ 614 (772)
-+|.+||.||.+.|..+.+++. ..+..+|.+||+|+.....+.. ..++++++.+|..+ .++...
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----~~~~I~~i~gDs~~~~~~~~l~----- 148 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSDLTTFEHLR----- 148 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----GCTTEEEEECCSSCSGGGGGGS-----
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----cccceeeeecccccHHHHHHHH-----
Confidence 4688999999998855554443 3367799999999865443322 35789999999643 222221
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...+|+||+|.+... ...+ .++ .....|++||++++
T Consensus 149 --------------------------~~~~dlIfID~~H~~--------~~v~--~~~--~~~~lLk~GG~iIv 184 (232)
T d2bm8a1 149 --------------------------EMAHPLIFIDNAHAN--------TFNI--MKW--AVDHLLEEGDYFII 184 (232)
T ss_dssp --------------------------SSCSSEEEEESSCSS--------HHHH--HHH--HHHHTCCTTCEEEE
T ss_pred --------------------------hcCCCEEEEcCCcch--------HHHH--HHH--HHhcccCcCCEEEE
Confidence 245899999865331 1111 222 23468999999987
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00053 Score=69.80 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=100.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.+..|-|+=+..|.+...+.+|+++|+++.=++..++.+ |+ ..+.++..|.. +.....
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~---~~~~~~~~~~~-~~~~~~-------- 168 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRY-PSQWCG-------- 168 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTC-THHHHT--------
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc---cceeeeccccc-cchhcc--------
Confidence 4557899999999988788888877789999999999888877665 55 23444444432 222221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--------------CCcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------FVEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~--------------f~~~~fl~~~~~~L~~~ 683 (772)
..+||.|++|+-.+- .|+.--.++ =+..+.|..+...|++|
T Consensus 169 -----------------------~~~fd~IL~DaPCSg--~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g 223 (284)
T d1sqga2 169 -----------------------EQQFDRILLDAPCSA--TGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 223 (284)
T ss_dssp -----------------------TCCEEEEEEECCCCC--GGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred -----------------------cccccEEEEeccccc--cCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 357999999995542 232212222 13677888899999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccceEEEe
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
|.+|.-+.+-.++..+.++..+-+-++....+.
T Consensus 224 G~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~~~ 256 (284)
T d1sqga2 224 GTLVYATCSVLPEENSLQIKAFLQRTADAELCE 256 (284)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred ceEEEeeecCchhhCHHHHHHHHHhCCCcEEec
Confidence 999999988899988999998888777655443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.25 E-value=0.00043 Score=68.47 Aligned_cols=101 Identities=16% Similarity=0.080 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc--ccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV--FMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~--~~~~sfDvVi~~~ 143 (772)
+..+|+|+|+|.|--+..|+=. +..+++.+|-+..=+...+.....-+ .++.+++..++++.. -..++||+|++..
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 4679999999999998888753 55689999999987776654433323 478888888877641 1236899999865
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+- + ...+++-+...+++||++++.-
T Consensus 150 va----~-------l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 150 VA----R-------LSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp CS----C-------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred hh----C-------HHHHHHHHhhhcccCCEEEEEC
Confidence 43 2 5689999999999999988765
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.24 E-value=0.00028 Score=67.64 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=36.7
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHH
Q 004133 541 GKSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAED 584 (772)
Q Consensus 541 ~~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiDp~v~~vA~~ 584 (772)
+.+.||+.+|+|+| +|++.|.+..+ ..+|.+.|||+.+++.|++
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~ 74 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS 74 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence 66789999999999 57888877633 2479999999999999974
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00097 Score=67.78 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=83.5
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEee-ccCcccccCC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD-MTSMQVFMDE 134 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D-~~~l~~~~~~ 134 (772)
....+.. .++.+|||+++|.|.=+..+++.+. ..|+++|+++.-++.++++....+.+....+.+ .........+
T Consensus 94 ~~~~L~~---~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~ 170 (284)
T d1sqga2 94 CMTWLAP---QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQ 170 (284)
T ss_dssp HHHHHCC---CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTC
T ss_pred cccccCc---cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccc
Confidence 3344544 6889999999999999998887642 569999999999999988876665554444433 3322212456
Q ss_pred CccEEEe------ccccccccc------Cccc---hHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 135 TFDVILD------KGGLDALME------PELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 135 sfDvVi~------~~~l~~l~~------~~~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.||.|+. .|++..-.+ +.+- ...-.++|..+.+.|||||+++.+|.+-
T Consensus 171 ~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 171 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 8999984 233321111 0000 0125688999999999999999988764
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.14 E-value=0.00033 Score=69.73 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=45.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI 602 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~ 602 (772)
....+||.||+|.|.+...+.+.+|++++++.|+ |.|++.| + ..+|++++.+|..
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~--~~~rv~~~~gD~f 133 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----S--GSNNLTYVGGDMF 133 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----C--CBTTEEEEECCTT
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----c--ccCceEEEecCcc
Confidence 3456899999999999999999999999999999 5555433 2 3689999999964
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0021 Score=65.42 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccccc---CCCccEEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFM---DETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~---~~sfDvVi 140 (772)
.++.+|||++||.|.-+.+++.. +-..|+++|+++.-++.+++++...+ .++.+...|...+. .. .+.||.|+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~-~~~~~~~~fD~VL 171 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS-PSDPRYHEVHYIL 171 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC-TTCGGGTTEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhc-ccccccceeeEEe
Confidence 67899999999999999888765 33469999999999998888776544 46888899988765 22 25799998
Q ss_pred ec------cccccccc------Cccc--h---HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 141 DK------GGLDALME------PELG--H---KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 141 ~~------~~l~~l~~------~~~~--~---~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.. |++....+ ..+. . ..-.+++..+. .|+|||+++.+|.+-
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 43 22221111 0100 0 11234566666 479999999888763
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=96.99 E-value=0.0005 Score=71.18 Aligned_cols=142 Identities=15% Similarity=0.045 Sum_probs=85.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-----CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-----PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-----p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
....+||..|+|+|++...+.+.+ +..++.++|+|+.++.+|+....+. .....+..+|....
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~----------- 183 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-RQKMTLLHQDGLAN----------- 183 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-TCCCEEEESCTTSC-----------
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-hhhhhhhccccccc-----------
Confidence 455789999999998877765543 3347999999999999999776442 23456666664321
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCC-CC------C-CCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSP-DS------S-SGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~-d~------~-~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
....+||+||.+.-=+ .. . .-...........-|++.+.+.|+|+|.++
T Consensus 184 -----------------------~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 184 -----------------------LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp -----------------------CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred -----------------------cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 1236799999853110 00 0 000001122335569999999999999877
Q ss_pred EEecCC--ChhHHHHHHHHHHHhccceEEEee
Q 004133 688 VNLVSR--SQATKDMVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 688 ~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~ 717 (772)
+=+... .......+-+.|.+.|.-...+.+
T Consensus 241 ~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~l 272 (328)
T d2f8la1 241 FLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKL 272 (328)
T ss_dssp EEEEGGGGGSTTHHHHHHHHHHHEEEEEEEEC
T ss_pred EEecCccccCchhHHHHHHHHhCCcEEEEEEC
Confidence 655332 112223344555555543333433
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.0003 Score=70.69 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=37.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 587 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 587 (772)
..+.++|.||+|.|.++.++..... .+|+++|+++.+++.|+++..
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~ 98 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQ 98 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHT
T ss_pred CCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHh
Confidence 3567999999999977654443322 389999999999999999985
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.94 E-value=0.0014 Score=62.07 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=80.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.....++...+|+|.-+..+.+. +.+|.++|.||.+++.|++.+ ++++.++.++--++-.....
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~---------- 80 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAA---------- 80 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHH----------
T ss_pred CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHH----------
Confidence 34457899999999888888775 458999999999999998753 47899999886665433321
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-CcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....+|.|++|+--+ +..+-.|...| .....|....+.|+++|.+++...
T Consensus 81 ------------------~~~~~vdgIl~DLGvS--s~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 81 ------------------LGVERVDGILADLGVS--SFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp ------------------TTCSCEEEEEEECSCC--HHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ------------------cCCCccCEEEEEccCC--HHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1135799999998322 11111122222 123478889999999999998775
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.92 E-value=0.00031 Score=69.30 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccC-CCC-cEEEEe-eccCcccccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSD-MRWRVM-DMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~-~~~-v~f~~~-D~~~l~~~~~~sfDvVi~~ 142 (772)
.+..+|+|+|||.|.++..++... ...+.|+|+--.. .+....... ..+ +++... |+.. .+.+..|+|++.
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~--~e~P~~~~~~~~ni~~~~~~~dv~~---l~~~~~D~vlcD 139 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG--HEEPIPMSTYGWNLVRLQSGVDVFF---IPPERCDTLLCD 139 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT--SCCCCCCCSTTGGGEEEECSCCTTT---SCCCCCSEEEEC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc--ccCCccccccccccccchhhhhHHh---cCCCcCCEEEee
Confidence 678899999999999999998773 2357777773210 000000000 011 233322 2222 356889999986
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..-. -.+++.+.....++++-+.+.|+|||-|+|-.++
T Consensus 140 m~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 140 IGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 5422 2222212223457788888999999999988777
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0021 Score=65.54 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=95.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.++.|-|+=+..|+..+ +..+|+++|+++.=++..++.+ |+ .++++...|+..+-....
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~---~~~~~~~~d~~~~~~~~~------- 162 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDP------- 162 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCG-------
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc---cceeeeehhhhhhccccc-------
Confidence 345679999999998777777665 3568999999999888888776 55 568999999876522211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--------------C--CcHHHHHHHHHcc
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------F--VEGSFLLTVKDAL 680 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~--------------f--~~~~fl~~~~~~L 680 (772)
...+||.|++|+-.+. .|+.-..+. + +....|..+. .|
T Consensus 163 -----------------------~~~~fD~VL~DaPCSg--~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l 216 (293)
T d2b9ea1 163 -----------------------RYHEVHYILLDPSCSG--SGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TF 216 (293)
T ss_dssp -----------------------GGTTEEEEEECCCCCC--------------------CCHHHHHHHHHHHHHHHT-TC
T ss_pred -----------------------ccceeeEEeecCcccc--hhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hc
Confidence 1256999999985542 222111111 1 1233444444 47
Q ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHhccceEEE
Q 004133 681 SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 715 (772)
Q Consensus 681 ~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~ 715 (772)
+++|.+|.-+.+-.++..+.+++.+-+-++..+.+
T Consensus 217 ~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~~~~~l 251 (293)
T d2b9ea1 217 PSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRL 251 (293)
T ss_dssp TTCCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEE
T ss_pred ccccEEEEeeccCChhHhHHHHHHHHHhCCCCEEe
Confidence 89999999998888888899999888877754443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.88 E-value=0.0025 Score=65.56 Aligned_cols=131 Identities=16% Similarity=0.184 Sum_probs=96.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+..|-|+=+..+..... ...|+++|+++.-++..++.. |. .++.+...|+..+ ...
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~---~~i~~~~~d~~~~-~~~--------- 182 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHI-GEL--------- 182 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGG-GGG---------
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh---hcccccccccccc-ccc---------
Confidence 446899999999987777777665 458999999999998887655 54 4577777887665 111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--------------CCcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------FVEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~--------------f~~~~fl~~~~~~L~~~ 683 (772)
...||.|++|+-.+. .|+.-..+. -+..+.|..+...|+||
T Consensus 183 -----------------------~~~fD~ILvDaPCSg--~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g 237 (313)
T d1ixka_ 183 -----------------------NVEFDKILLDAPCTG--SGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG 237 (313)
T ss_dssp -----------------------CCCEEEEEEECCTTS--TTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred -----------------------cccccEEEEcccccc--CCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC
Confidence 367999999996553 222211111 23566778888899999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhcc
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFN 710 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 710 (772)
|.+|.-..+-.++..+.++..+-+.++
T Consensus 238 G~lVYsTCSl~~eENE~VV~~~L~~~~ 264 (313)
T d1ixka_ 238 GILVYSTCSLEPEENEFVIQWALDNFD 264 (313)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred cEEEEeeccCChHhHHHHHHHHHhcCC
Confidence 999999988888888899988877664
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.0003 Score=70.37 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=51.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
.....||.||.|.|+|+..|.+.. .+|++||+|+.+++..++.|.. .++++++.+|++++
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTF 79 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGC
T ss_pred CCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhh
Confidence 345789999999999999999864 4899999999999999887643 57999999999975
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.79 E-value=0.0018 Score=68.31 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=71.8
Q ss_pred CCeEEEEcCCCchhHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhccCC----------------CCcEEEEeeccCcccc
Q 004133 69 PPQILVPGCGNSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDR----------------SDMRWRVMDMTSMQVF 131 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~-~g~~~V~gvDiS~~~I~~a~~~~~~~~----------------~~v~f~~~D~~~l~~~ 131 (772)
+.+|||..||+|..+...+. .|...|+..|+|+.+++.++++...+. ..+.+.++|+..+..-
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 57999999999999986655 477789999999999999987764322 1356667776654312
Q ss_pred cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
....||+|.... +-.+ ..+++.+.+.++.||.+.+.
T Consensus 126 ~~~~fDvIDiDP----fGs~-------~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 126 RHRYFHFIDLDP----FGSP-------MEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp STTCEEEEEECC----SSCC-------HHHHHHHHHHEEEEEEEEEE
T ss_pred hcCcCCcccCCC----CCCc-------HHHHHHHHHHhccCCEEEEE
Confidence 345799876432 2222 46899999999988877654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.58 E-value=0.00028 Score=70.36 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=52.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
....+||.||.|.|+|+..|.+.. .+|++||+|+.+++.+++.|.. .++++++.+|++++
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQF 87 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTT
T ss_pred CCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhh--ccchhhhhhhhhcc
Confidence 345689999999999999999884 4899999999999999988863 57899999999886
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.58 E-value=0.0045 Score=57.65 Aligned_cols=98 Identities=22% Similarity=0.238 Sum_probs=66.2
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+|||+|.|+- .+...+.+.+...+|.++|.++.-++.|++ ||.. .-+.....|..+.+++..
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~-~Ga~--~~i~~~~~~~~~~i~~~t---------- 93 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-LGAT--HVINSKTQDPVAAIKEIT---------- 93 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-HTCS--EEEETTTSCHHHHHHHHT----------
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH-cCCe--EEEeCCCcCHHHHHHHHc----------
Confidence 45568999998744 344444445555588999999999999987 4642 112112245666666654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
+..+|+||-.+ + ..+.++.+.+.|+++|.+++
T Consensus 94 ---------------------~gg~D~vid~~--G--------------~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 94 ---------------------DGGVNFALEST--G--------------SPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp ---------------------TSCEEEEEECS--C--------------CHHHHHHHHHTEEEEEEEEE
T ss_pred ---------------------CCCCcEEEEcC--C--------------cHHHHHHHHhcccCceEEEE
Confidence 24799988622 2 16778899999999998875
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.44 E-value=0.00031 Score=69.82 Aligned_cols=54 Identities=15% Similarity=0.029 Sum_probs=43.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI 602 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~ 602 (772)
...+||.||+|.|.++.-|.+.+|+++++++|+-+. ++.+ ...+|++...+|-.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~------~~~~r~~~~~~d~~ 134 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA------PSYPGVEHVGGDMF 134 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC------CCCTTEEEEECCTT
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc------ccCCceEEeccccc
Confidence 357899999999999999999999999999999654 3322 23578999988853
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.42 E-value=0.0037 Score=58.65 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=64.1
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+|||+|.|+ |.+...+.+.+...+|.++|.++.-++.|++. |. +.-+.....|..++.+....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga--~~vi~~~~~~~~~~~~~i~~--------- 94 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GA--DLTLNRRETSVEERRKAIMD--------- 94 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TC--SEEEETTTSCHHHHHHHHHH---------
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccc-cc--eEEEeccccchHHHHHHHHH---------
Confidence 3457899999873 56666777776544899999999999999764 54 11111111234444333220
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
-..+..+|+||--+-+ ...++.+.+.|+++|.+++
T Consensus 95 ------------------~~~~~g~Dvvid~vG~----------------~~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 95 ------------------ITHGRGADFILEATGD----------------SRALLEGSELLRRGGFYSV 129 (182)
T ss_dssp ------------------HTTTSCEEEEEECSSC----------------TTHHHHHHHHEEEEEEEEE
T ss_pred ------------------hhCCCCceEEeecCCc----------------hhHHHHHHHHhcCCCEEEE
Confidence 0013569998842211 3357888899999999864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.012 Score=55.28 Aligned_cols=146 Identities=13% Similarity=0.130 Sum_probs=95.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+..+||.||.+-|+...++.+.. +...|.+||+.|. .+-+...++.+|....-...... .
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~-------~- 82 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALL-------E- 82 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHH-------H-
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhh-------h-
Confidence 45689999999999999888754 4568999998762 23466788888864322111000 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC----CCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD----FVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~----f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
.....++|+|+.|.-.. . .|.... .+ =+-...+..+.+.|++||.||+=+... .
T Consensus 83 -----------------~~~~~~~DlVlSD~ap~-~-sg~~~~-d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g--~ 140 (180)
T d1ej0a_ 83 -----------------RVGDSKVQVVMSDMAPN-M-SGTPAV-DIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG--E 140 (180)
T ss_dssp -----------------HHTTCCEEEEEECCCCC-C-CSCHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS--T
T ss_pred -----------------hccCcceeEEEecccch-h-cccchh-HHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC--c
Confidence 00136799999986432 2 222100 01 123445666778899999999998763 2
Q ss_pred HHHHHHHHHHHhccceEEEeecC----CceEEEEEe
Q 004133 697 TKDMVISRMKMVFNHLFCLQLEE----DVNLVLFGL 728 (772)
Q Consensus 697 ~~~~v~~~l~~vF~~v~~~~~~~----~~N~vl~a~ 728 (772)
....++..|+..|..|..++... .....++|.
T Consensus 141 ~~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~ 176 (180)
T d1ej0a_ 141 GFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 176 (180)
T ss_dssp THHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEE
T ss_pred cHHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEe
Confidence 34568999999999999998643 233455554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0017 Score=65.52 Aligned_cols=61 Identities=21% Similarity=0.190 Sum_probs=52.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~ 604 (772)
....||.||-|.|+|+..|.+.. .+|++||+|+.+++..++.|.- ....+++++.+|++++
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred CCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 45689999999999999999884 4899999999999999988843 2347899999999875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.32 E-value=0.038 Score=54.00 Aligned_cols=130 Identities=11% Similarity=0.168 Sum_probs=88.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v---A~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+++.||.|+|.=...|.-++|+.+++.||-+..=+.. +.+..|+ .++.++.+.+.++-....
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L---~n~~i~~~R~E~~~~~~~--------- 137 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKD--------- 137 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTT---------
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC---CCcEEEeehhhhcccccc---------
Confidence 4468999999999655566667899999999999875554 5566688 578999988877632211
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
...+||+|+.=+.++ + ..+++.+...|+++|.+++---....+..
T Consensus 138 ---------------------~~~~~D~v~sRAva~--------l------~~ll~~~~~~l~~~g~~i~~KG~~~~~El 182 (239)
T d1xdza_ 138 ---------------------VRESYDIVTARAVAR--------L------SVLSELCLPLVKKNGLFVALKAASAEEEL 182 (239)
T ss_dssp ---------------------TTTCEEEEEEECCSC--------H------HHHHHHHGGGEEEEEEEEEEECC-CHHHH
T ss_pred ---------------------ccccceEEEEhhhhC--------H------HHHHHHHhhhcccCCEEEEECCCChHHHH
Confidence 135799999866554 1 77899999999999999875533333333
Q ss_pred HHHHHHHHHhcc---ceEEEeec
Q 004133 699 DMVISRMKMVFN---HLFCLQLE 718 (772)
Q Consensus 699 ~~v~~~l~~vF~---~v~~~~~~ 718 (772)
+..-..++...- .+..+.++
T Consensus 183 ~~a~~~~~~~~~~~~~v~~~~lp 205 (239)
T d1xdza_ 183 NAGKKAITTLGGELENIHSFKLP 205 (239)
T ss_dssp HHHHHHHHHTTEEEEEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEEEEEeCC
Confidence 333333333222 34555543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0072 Score=58.14 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=72.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHH---HhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAE---DYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~---~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
+.+++.||.|+|.=...|+-++|+.+++.||-...=+...+ +-.|+ ++++++.+.+.++ .
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~~----~---------- 128 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRVEEF----P---------- 128 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCTTTS----C----------
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC---cceeeeccchhhh----c----------
Confidence 46899999999954445666789999999999987665544 44576 4699998877653 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...+||+|+.=++++ -..++..+...|+++|.+++--
T Consensus 129 --------------------~~~~fD~V~sRA~~~--------------~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 129 --------------------SEPPFDGVISRAFAS--------------LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --------------------CCSCEEEEECSCSSS--------------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred --------------------cccccceehhhhhcC--------------HHHHHHHHHHhcCCCcEEEEEC
Confidence 135799998755443 1678888999999999998754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.27 E-value=0.0057 Score=58.23 Aligned_cols=115 Identities=15% Similarity=0.059 Sum_probs=73.2
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+|||+|.|+ |.+...+.......+|.++|.++.-++.|+++ |.. .-+.-...|..+.+.+...
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~-Ga~--~~~~~~~~~~~~~i~~~t~--------- 91 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GFE--IADLSLDTPLHEQIAALLG--------- 91 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCE--EEETTSSSCHHHHHHHHHS---------
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc-ccc--EEEeCCCcCHHHHHHHHhC---------
Confidence 4556899999997 55666667676667999999999999999776 431 1000012355566655431
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
+..+|++|- +-..+............-..+.|+.+.+.++|+|.+++=
T Consensus 92 ---------------------g~g~D~vid-~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 92 ---------------------EPEVDCAVD-AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp ---------------------SSCEEEEEE-CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred ---------------------CCCcEEEEE-CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 356999884 322221111111112223578999999999999988753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.16 E-value=0.0047 Score=57.69 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=67.3
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+|||+|.|+ |.+...+.+.+...+|.++|.++.-++.|++ +|. +.-+.....|-.+.+.+..
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~-lGa--~~~i~~~~~~~~~~v~~~t---------- 92 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF-YGA--TDILNYKNGHIEDQVMKLT---------- 92 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH-HTC--SEEECGGGSCHHHHHHHHT----------
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh-hCc--cccccccchhHHHHHHHHh----------
Confidence 4567899999986 6777777777655589999999999999976 564 2212222234445555543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+..+|+||--+.+ .+.++.+.+.|+|+|.+++
T Consensus 93 --------------------~g~G~D~vid~~g~----------------~~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 93 --------------------NGKGVDRVIMAGGG----------------SETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp --------------------TTSCEEEEEECSSC----------------TTHHHHHHHHEEEEEEEEE
T ss_pred --------------------hccCcceEEEccCC----------------HHHHHHHHHHHhcCCEEEE
Confidence 13569998752221 3457888899999999885
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.015 Score=53.61 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=64.6
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+|||+|.|+. .+...+.......+|.++|.++.-++.|+++ |.. ..+..-..|..+..+....
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~-Ga~--~~~~~~~~~~~~~~~~~~~--------- 92 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI-GAD--LVLQISKESPQEIARKVEG--------- 92 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TCS--EEEECSSCCHHHHHHHHHH---------
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh-CCc--ccccccccccccccccccc---------
Confidence 34568999999844 5555566666555899999999999999865 642 1111111233333332220
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+..+|+||- . ++ ....++.+.+.|+++|.+++-
T Consensus 93 -------------------~~g~g~Dvvid-~-~G--------------~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 93 -------------------QLGCKPEVTIE-C-TG--------------AEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp -------------------HHTSCCSEEEE-C-SC--------------CHHHHHHHHHHSCTTCEEEEC
T ss_pred -------------------cCCCCceEEEe-c-cC--------------CchhHHHHHHHhcCCCEEEEE
Confidence 01356899875 1 11 167799999999999988763
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.94 E-value=0.0092 Score=55.61 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------cc-cCCCcc
Q 004133 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------VF-MDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~-G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~~-~~~sfD 137 (772)
+++.+||-+|||. |.++..+++. |..+|+++|.++.-++.+++.-. ..++ |..+.. .. ....+|
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-----~~~i--~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-----TDIL--NYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-----SEEE--CGGGSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-----cccc--cccchhHHHHHHHHhhccCcc
Confidence 6899999999998 7888888886 77679999999988887754321 1222 222211 01 234599
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|++.-.- ...++...+.|+|+|+++++.+.
T Consensus 99 ~vid~~g~-------------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 99 RVIMAGGG-------------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp EEEECSSC-------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred eEEEccCC-------------HHHHHHHHHHHhcCCEEEEEeec
Confidence 98874321 24667888999999999987654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.015 Score=60.22 Aligned_cols=122 Identities=8% Similarity=0.056 Sum_probs=83.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.+-+|.|.++..|+... .+|++||+++..++.|++......-.+++++.+|..+++.....
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~---------- 278 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW---------- 278 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG----------
T ss_pred CCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh----------
Confidence 445789999999999999998764 58999999999999999987443446799999988776544321
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
....||+||+|- |..|+ .++++.+.+. ++.=|+ -+.|....+...
T Consensus 279 -------------------~~~~~d~vilDP----PR~G~---------~~~~~~l~~~-~~~~iv--YVSCnp~TlaRD 323 (358)
T d1uwva2 279 -------------------AKNGFDKVLLDP----ARAGA---------AGVMQQIIKL-EPIRIV--YVSCNPATLARD 323 (358)
T ss_dssp -------------------GTTCCSEEEECC----CTTCC---------HHHHHHHHHH-CCSEEE--EEESCHHHHHHH
T ss_pred -------------------hhccCceEEeCC----CCccH---------HHHHHHHHHc-CCCEEE--EEeCCHHHHHHH
Confidence 136799999953 23343 3567776653 555443 344555555454
Q ss_pred HHHHH-HHhcc
Q 004133 701 VISRM-KMVFN 710 (772)
Q Consensus 701 v~~~l-~~vF~ 710 (772)
+..| ..-|.
T Consensus 324 -l~~l~~~gy~ 333 (358)
T d1uwva2 324 -SEALLKAGYT 333 (358)
T ss_dssp -HHHHHHTTCE
T ss_pred -HHHHHHCCCe
Confidence 3344 44353
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.86 E-value=0.0058 Score=58.55 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=69.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||..|+|+|.+...+.+..+ ...+.++|+|+..+.+ ..+..++.+|...+ .
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~---~----------- 74 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLW---E----------- 74 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGC---C-----------
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhcc---c-----------
Confidence 4567999999999987766665544 4579999999975433 23568888886543 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC-----------------CcCCcCCCcHHHHHHHHHcc
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----------------TCPAADFVEGSFLLTVKDAL 680 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~--~g~-----------------s~Pp~~f~~~~fl~~~~~~L 680 (772)
...+||+|+.+-.-.... ... ..+...-+...|++.+.+.|
T Consensus 75 --------------------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~l 134 (223)
T d2ih2a1 75 --------------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL 134 (223)
T ss_dssp --------------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE
T ss_pred --------------------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhc
Confidence 136799999754211000 000 00001113567899999999
Q ss_pred CCCcEEEEEe
Q 004133 681 SEQGLFIVNL 690 (772)
Q Consensus 681 ~~~Gilv~Nl 690 (772)
+++|.+++=+
T Consensus 135 k~~G~~~~I~ 144 (223)
T d2ih2a1 135 KPGGVLVFVV 144 (223)
T ss_dssp EEEEEEEEEE
T ss_pred ccCCceEEEE
Confidence 9999987654
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.85 E-value=0.0054 Score=60.63 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCC------CCCeEEEEccHHHHHHhhc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQ------DKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~------~~rl~v~i~Dg~~~l~~~~ 609 (772)
+.+.+||..=+|.|.-+..+.... .+|++||-+|.+..+.++-+ .... -.|++++.+|+++|+++..
T Consensus 87 ~~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~ 162 (250)
T d2oyra1 87 DYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_dssp TBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS
T ss_pred CCCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccC
Confidence 555689999999999998888774 58999999999988877654 1111 1489999999999998753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.80 E-value=0.023 Score=51.89 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=62.7
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+|||+|.|+ |.+...+.+... .+|.++|.++.-++.|+++ |. +.-+.....|..+.+.+..
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~-Ga--~~~i~~~~~~~~~~~~~~~---------- 91 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKL-GA--SLTVNARQEDPVEAIQRDI---------- 91 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT-TC--SEEEETTTSCHHHHHHHHH----------
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhcc-Cc--cccccccchhHHHHHHHhh----------
Confidence 4456899999873 455556666664 6999999999999999875 54 2212212234445444432
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..+|.++++.-+ .+.++.+.+.|+++|.+++
T Consensus 92 ----------------------~g~~~~i~~~~~----------------~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 92 ----------------------GGAHGVLVTAVS----------------NSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp ----------------------SSEEEEEECCSC----------------HHHHHHHHTTEEEEEEEEE
T ss_pred ----------------------cCCccccccccc----------------chHHHHHHHHhcCCcEEEE
Confidence 235655553211 4568888899999999885
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.73 E-value=0.018 Score=53.73 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc----------cccCC
Q 004133 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------VFMDE 134 (772)
Q Consensus 67 ~~~~~ILDlGCG~-G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~----------~~~~~ 134 (772)
+++.+||.+|||. |.++..+++. |..+|+++|.++.-++.+++.- .. .+ .|..+.. .....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG----a~-~v--i~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG----AD-LT--LNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT----CS-EE--EETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCccchhheeccccccccccccccccccccccccccc----ce-EE--EeccccchHHHHHHHHHhhCCC
Confidence 6789999999985 6677777776 7768999999999988775431 11 11 2222211 01234
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+|+|++.- -. ...++...+.|++||+++++.+.
T Consensus 100 g~Dvvid~v-----G~--------~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 100 GADFILEAT-----GD--------SRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp CEEEEEECS-----SC--------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CceEEeecC-----Cc--------hhHHHHHHHHhcCCCEEEEEeec
Confidence 599988632 11 24678888999999999887644
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.46 E-value=0.033 Score=51.42 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCCCch-hHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc----cccCCCccEE
Q 004133 66 SSPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----VFMDETFDVI 139 (772)
Q Consensus 66 ~~~~~~ILDlGCG~G~-ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~----~~~~~sfDvV 139 (772)
.+|+.+||-+|||.-. ++..+++. |...|+.+|.++.-++.+++.- -..++..+-.+.. .+.++.||+|
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G-----a~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG-----ATHVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT-----CSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC-----CeEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 3789999999998643 44555554 8888999999998888775432 1233322222211 1335679998
Q ss_pred EecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++.-. ....++...++++|+|+++++..
T Consensus 101 id~~G-------------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 101 LESTG-------------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EECSC-------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEcCC-------------cHHHHHHHHhcccCceEEEEEee
Confidence 86321 13677889999999999988754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.42 E-value=0.024 Score=52.03 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=64.1
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEE----ccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI----TDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i----~Dg~~~l~~~~~~~~~~ 615 (772)
....+|||+|.| .|.+...+.+... .+|.++|.++.-++.|++...- ..+.. .|..++.+....
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~-----~~~~~~~~~~~~~~~~~~~~~----- 93 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGAD-----VTLVVDPAKEEESSIIERIRS----- 93 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCS-----EEEECCTTTSCHHHHHHHHHH-----
T ss_pred CCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCc-----EEEeccccccccchhhhhhhc-----
Confidence 445689999987 4555555666654 5999999999999999886431 11111 123333333320
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+..+|+||--+ .. ...++.+.+.|+++|.+++-
T Consensus 94 -----------------------~~g~g~D~vid~~-g~---------------~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 94 -----------------------AIGDLPNVTIDCS-GN---------------EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp -----------------------HSSSCCSEEEECS-CC---------------HHHHHHHHHHSCTTCEEEEC
T ss_pred -----------------------ccccCCceeeecC-CC---------------hHHHHHHHHHHhcCCceEEE
Confidence 1135689886522 11 56788899999999998853
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.41 E-value=0.034 Score=51.55 Aligned_cols=102 Identities=20% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEcc-HHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD-GIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~D-g~~~l~~~~~~~~~~~~~ 618 (772)
....+|||+|.|+ |.+...+.+.....+|.++|.++.=++.|++ ||.. .-+.....| ..+.+....
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~-~Ga~--~~i~~~~~~~~~~~~~~~~--------- 94 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-LGAT--DCLNPRELDKPVQDVITEL--------- 94 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCS--EEECGGGCSSCHHHHHHHH---------
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH-hCCC--cccCCccchhhhhhhHhhh---------
Confidence 4457899999997 7777788888776689999999999999987 4542 111111112 222222221
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC-cEEEEEec
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ-GLFIVNLV 691 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~-Gilv~Nl~ 691 (772)
.+..+|++|- .++ .++.++.+.+.|+++ |.+++--.
T Consensus 95 ---------------------~~~G~d~vie--~~G--------------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 95 ---------------------TAGGVDYSLD--CAG--------------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp ---------------------HTSCBSEEEE--SSC--------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred ---------------------hcCCCcEEEE--ecc--------------cchHHHHHHHHhhcCCeEEEecCC
Confidence 0356899975 222 167899999999996 98887543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.30 E-value=0.026 Score=51.79 Aligned_cols=99 Identities=19% Similarity=0.326 Sum_probs=62.5
Q ss_pred CCCCeEEEEcccc--cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGA--GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~--G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+|||+|.|| |.+...+.......+|.+++.++.=++.++++ |. +..+.....|..+.+.+..
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~-Ga--~~~i~~~~~~~~~~~~~~~--------- 93 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA-GA--DYVINASMQDPLAEIRRIT--------- 93 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH-TC--SEEEETTTSCHHHHHHHHT---------
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc-CC--ceeeccCCcCHHHHHHHHh---------
Confidence 4557899999743 34445444555556999999999999999774 54 1111111124444444432
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+..+|+||- .-.+ ...++.+.+.|+|+|.+++
T Consensus 94 ---------------------~~~~~d~vid-~~g~---------------~~~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 94 ---------------------ESKGVDAVID-LNNS---------------EKTLSVYPKALAKQGKYVM 126 (170)
T ss_dssp ---------------------TTSCEEEEEE-SCCC---------------HHHHTTGGGGEEEEEEEEE
T ss_pred ---------------------hcccchhhhc-cccc---------------chHHHhhhhhcccCCEEEE
Confidence 1356998775 2111 5667777889999998874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.25 E-value=0.027 Score=53.28 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~-G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
+++.+||.+|||. |.++..+++. |...|+.+|.++.-++.+++.- .... .+-.+.+ ......+|
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G------a~~~-~~~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG------FEIA-DLSLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT------CEEE-ETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc------ccEE-EeCCCcCHHHHHHHHhCCCCcE
Confidence 6899999999998 6666777765 7778999999999888885442 1221 1211111 01234689
Q ss_pred EEEecccccccccCccc--hHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 138 VILDKGGLDALMEPELG--HKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~--~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++++.-........... .......++.+.++++|||+++++..
T Consensus 97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 99975443221110000 00024789999999999999988764
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.0096 Score=61.23 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=52.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
.....||.||-|.|+|+..|.+...--+|++||+|+...+.-++.|. +++++++.+|+..|
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDW 102 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhc
Confidence 35568999999999999999887422389999999999999998874 57899999999876
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.07 E-value=0.034 Score=50.88 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=71.0
Q ss_pred CeEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 544 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 544 ~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
++|++||+| ||++++.|.+..+..+|.++|.|+..++.|++. +.. .....+-. ...
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~-~~~-----~~~~~~~~----~~~------------ 59 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GII-----DEGTTSIA----KVE------------ 59 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSC-----SEEESCGG----GGG------------
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh-hcc-----hhhhhhhh----hhh------------
Confidence 479999999 789999999887777999999999999999876 321 11111110 111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
....|+||+-+ ||.. ..++++.++..++++-++ +.+.+......+.+
T Consensus 60 -------------------~~~~dlIila~-----------p~~~--~~~vl~~l~~~~~~~~ii-~d~~s~k~~~~~~~ 106 (171)
T d2g5ca2 60 -------------------DFSPDFVMLSS-----------PVRT--FREIAKKLSYILSEDATV-TDQGSVKGKLVYDL 106 (171)
T ss_dssp -------------------GTCCSEEEECS-----------CHHH--HHHHHHHHHHHSCTTCEE-EECCSCCTHHHHHH
T ss_pred -------------------ccccccccccC-----------Cchh--hhhhhhhhhccccccccc-cccccccHHHHHHH
Confidence 24579999832 2222 367888999999876554 55544444444443
Q ss_pred HHHHHH
Q 004133 702 ISRMKM 707 (772)
Q Consensus 702 ~~~l~~ 707 (772)
-+.+..
T Consensus 107 ~~~~~~ 112 (171)
T d2g5ca2 107 ENILGK 112 (171)
T ss_dssp HHHHGG
T ss_pred HHhhcc
Confidence 444443
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.00 E-value=0.0041 Score=61.09 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=88.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHH--HHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT--MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~--v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
...+|+.||+|-|+-+.++....+...+.++++=-. ..-+....++. +-++....+.+.
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~---ni~~~~~~~dv~---------------- 126 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGW---NLVRLQSGVDVF---------------- 126 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTG---GGEEEECSCCTT----------------
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCcccccccc---ccccchhhhhHH----------------
Confidence 345799999999999999988865557777766110 00000011110 112222222211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 699 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 699 (772)
...+...|+|++|+-.+++.. ...+-.+...|+.+.+.|+|||-|++=+.+......-
T Consensus 127 ------------------~l~~~~~D~vlcDm~ess~~~----~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~ 184 (257)
T d2p41a1 127 ------------------FIPPERCDTLLCDIGESSPNP----TVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVI 184 (257)
T ss_dssp ------------------TSCCCCCSEEEECCCCCCSSH----HHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHH
T ss_pred ------------------hcCCCcCCEEEeeCCCCCCCc----hhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHH
Confidence 112467999999984332110 1122345678888899999999999999987665556
Q ss_pred HHHHHHHHhccceEEEee--cCCceEEEEEecC
Q 004133 700 MVISRMKMVFNHLFCLQL--EEDVNLVLFGLSS 730 (772)
Q Consensus 700 ~v~~~l~~vF~~v~~~~~--~~~~N~vl~a~~~ 730 (772)
..+++|+..|.....-.. -+...++++.+..
T Consensus 185 e~le~lq~~fgg~lVR~P~SRnst~EmY~Vs~~ 217 (257)
T d2p41a1 185 EKMEALQRKHGGALVRNPLSRNSTHEMYWVSNA 217 (257)
T ss_dssp HHHHHHHHHHCCEEECCTTSCTTCCCEEEETTC
T ss_pred HHHHHHHHHhCCeeEcCCCCccccceeEEeecc
Confidence 679999999986444332 1234555555443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.93 E-value=0.043 Score=50.80 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=43.6
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC
Q 004133 513 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 588 (772)
Q Consensus 513 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~ 588 (772)
.-|.|.|.++.-+.+-. .......+|||+|.|+..+ ...+.+.....+|.++|.++.-++.|+++ |-
T Consensus 6 a~lgCa~~Ta~~a~~~~--------a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l-Ga 73 (174)
T d1p0fa2 6 CLIGCGFATGYGAAVNT--------AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GA 73 (174)
T ss_dssp GGGGTHHHHHHHHHHTT--------TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TC
T ss_pred HhhhhHHHHHHHHHHHh--------hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc-CC
Confidence 34667666654432211 1224556899999986533 33444454556899999999999999875 53
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.92 E-value=0.075 Score=48.43 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc---------cccCCC
Q 004133 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---------VFMDET 135 (772)
Q Consensus 67 ~~~~~ILDlGCG~-G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~---------~~~~~s 135 (772)
+++.+||-+|||. |.++..+++. |. +|+++|.++.-++.+++.. .... ...|-.... ......
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~g----a~~~-~~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCG----ADVT-LVVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT----CSEE-EECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcC----CcEE-EeccccccccchhhhhhhcccccC
Confidence 6889999999984 5566666665 76 7999999999888886532 1222 222221111 011356
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+|++.-. ....++...++|+++|+++++....
T Consensus 99 ~D~vid~~g-------------~~~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 99 PNVTIDCSG-------------NEKCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp CSEEEECSC-------------CHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred CceeeecCC-------------ChHHHHHHHHHHhcCCceEEEecCC
Confidence 899887321 1357788889999999999876543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.01 Score=54.77 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=62.7
Q ss_pred CCCCeEEEEcCC-CchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEE-eeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCG-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV-MDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG-~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~-~D~~~l~~~~~~sfDvVi~~~ 143 (772)
+++++||.+||| -|.++..+++. |. +|+++|.++.-++.+++.-. . .++. .+-.+...-..+.||+|++.-
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa----~-~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGA----D-HYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC----S-EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCC----c-EEeeccchHHHHHhhhcccceEEEEe
Confidence 689999999998 46666777665 86 69999999998888855321 1 2221 111111112346799888742
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.-.. ...++...+.|+|+|+++++...
T Consensus 100 ~~~~-----------~~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1piwa2 100 SSLT-----------DIDFNIMPKAMKVGGRIVSISIP 126 (168)
T ss_dssp SCST-----------TCCTTTGGGGEEEEEEEEECCCC
T ss_pred cCCc-----------cchHHHHHHHhhccceEEEeccc
Confidence 2111 01235678899999999987654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.54 E-value=0.063 Score=49.71 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=36.6
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC
Q 004133 541 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 587 (772)
Q Consensus 541 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 587 (772)
.....|||+|.|+. .+...+...+...+|.+||.+++-+++|+++-.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 44567999999865 444455566666799999999999999988753
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.045 Score=56.00 Aligned_cols=76 Identities=9% Similarity=-0.005 Sum_probs=58.0
Q ss_pred hhHHHHHHHhhcC---CCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeecc
Q 004133 51 PQLRDPLISLIGA---PTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (772)
Q Consensus 51 ~~l~~~l~~~l~~---~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~ 126 (772)
+.+...+...+.. .....+..|||+|+|.|.++..|.+. +..+|+++++++..++..+++.. ..+++++.+|+.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l 100 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCchh
Confidence 3555556565432 11135679999999999999999987 45689999999999999887763 357999999987
Q ss_pred Cc
Q 004133 127 SM 128 (772)
Q Consensus 127 ~l 128 (772)
.+
T Consensus 101 ~~ 102 (322)
T d1i4wa_ 101 DW 102 (322)
T ss_dssp CH
T ss_pred hc
Confidence 64
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.49 E-value=0.082 Score=48.83 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcCCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------cccCCCcc
Q 004133 66 SSPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------VFMDETFD 137 (772)
Q Consensus 66 ~~~~~~ILDlGCG~-G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~~~~~sfD 137 (772)
.+++.+||-+|||. |.++..+++. |...|+.+|.++.-++.+++.-. ..++...-.+.. ....+.+|
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-----TDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-----CcccCCccchhhhhhhHhhhhcCCCc
Confidence 37899999999998 7777888776 87789999999988777754321 122211111100 01245789
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccC-eEEEEEEcC
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG-GKFVCLTLA 181 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpG-G~~ii~~~~ 181 (772)
+|++.-. ....+++..+.|++| |+++++...
T Consensus 101 ~vie~~G-------------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 101 YSLDCAG-------------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp EEEESSC-------------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred EEEEecc-------------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 9876321 246889999999996 999887643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.11 Score=47.46 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCCCchhH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls-~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
+++.+||-+|||...+. ..++.. |..+|+++|.++.-++.+++.- .. .+...+-.+.. .-....+|
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~G----a~-~~~~~~~~~~~~~~~~~~~~~g~g~D 99 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG----AD-LVLQISKESPQEIARKVEGQLGCKPE 99 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----CS-EEEECSSCCHHHHHHHHHHHHTSCCS
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhC----Cc-ccccccccccccccccccccCCCCce
Confidence 67899999999875444 555554 7778999999999888775432 11 22222212111 01235689
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|++.-. ....++...+.+++||++++..+..
T Consensus 100 vvid~~G-------------~~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 100 VTIECTG-------------AEASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp EEEECSC-------------CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred EEEeccC-------------CchhHHHHHHHhcCCCEEEEEecCC
Confidence 9887331 1367889999999999999876543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.086 Score=48.34 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=63.4
Q ss_pred CCCCeEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+..+|||+|.+ .|.+...+..... .++.++.-++.=.+.+++ +|. +.-+...-.|-.+.+++..
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~~~~~~-~Ga--~~vi~~~~~~~~~~i~~~t--------- 93 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQKIVLQ-NGA--HEVFNHREVNYIDKIKKYV--------- 93 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHH-TTC--SEEEETTSTTHHHHHHHHH---------
T ss_pred CCCCEEEEEeccccccccccccccccC-cccccccccccccccccc-cCc--ccccccccccHHHHhhhhh---------
Confidence 345689999963 4566666777764 588888889988899987 454 2211111234445554443
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+..+|+|+- . .....++.+.+.|+++|.+++
T Consensus 94 ---------------------~~~g~d~v~d-~----------------~g~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 94 ---------------------GEKGIDIIIE-M----------------LANVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp ---------------------CTTCEEEEEE-S----------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred ---------------------ccCCceEEee-c----------------ccHHHHHHHHhccCCCCEEEE
Confidence 1466998874 1 114568888899999999885
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.14 Score=46.92 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=62.1
Q ss_pred CCCCeEEEEcC--CCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCc
Q 004133 67 SPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETF 136 (772)
Q Consensus 67 ~~~~~ILDlGC--G~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sf 136 (772)
.++.+||..|+ |.|..+..+++. |. ++++++-++.-.+.+++.- .. .+ .|..+.. ......+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~G----a~-~v--i~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNG----AH-EV--FNHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT----CS-EE--EETTSTTHHHHHHHHHCTTCE
T ss_pred CCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccC----cc-cc--cccccccHHHHhhhhhccCCc
Confidence 68899999997 456777777776 76 6999998997777665421 11 12 2333322 1234679
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+|++.. -...++...++|+|+|+++.+.
T Consensus 99 d~v~d~~--------------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 99 DIIIEML--------------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEESC--------------HHHHHHHHHHHEEEEEEEEECC
T ss_pred eEEeecc--------------cHHHHHHHHhccCCCCEEEEEe
Confidence 9998732 1356788889999999998764
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=93.77 E-value=0.034 Score=54.71 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHH---HHHhccCC-------CCcEEEEeeccCcccccCCCccE
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM---LRRNVRDR-------SDMRWRVMDMTSMQVFMDETFDV 138 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a---~~~~~~~~-------~~v~f~~~D~~~l~~~~~~sfDv 138 (772)
..+|||.-||.|..+..++..|. +|++++-++.+.... .+++.... .+++++++|..++-.-..+.||+
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 35899999999999999999987 599999999765433 33332221 26899999987743123568999
Q ss_pred EEecccccc
Q 004133 139 ILDKGGLDA 147 (772)
Q Consensus 139 Vi~~~~l~~ 147 (772)
|+.--++..
T Consensus 168 IYlDPMFp~ 176 (250)
T d2oyra1 168 VYLDPMFPH 176 (250)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 997776643
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.69 E-value=0.082 Score=48.43 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=63.5
Q ss_pred CCCCeEEEEcCCCchhH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc----cccCCCccEEE
Q 004133 67 SPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----VFMDETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls-~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~----~~~~~sfDvVi 140 (772)
+|+.+||-+|||...+. ..+++. |...|+++|.++.-++.+++.. ...++..+-.... ......+|+|+
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g-----a~~~i~~~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG-----ADHVVDARRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT-----CSEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc-----cceeecCcccHHHHHHHhhCCCCceEEE
Confidence 57899999999875544 556554 7778999999998777775432 1223222111111 01234689888
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+... . ...++...+.|++||+++++.+.
T Consensus 106 d~~g-----~--------~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 106 DFVG-----S--------QATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp ESSC-----C--------HHHHHHGGGGEEEEEEEEECCCS
T ss_pred EecC-----c--------chHHHHHHHHHhCCCEEEEEeCc
Confidence 6332 1 35788899999999999987653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.69 E-value=0.11 Score=47.49 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=62.3
Q ss_pred CCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEE--ccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI--TDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i--~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....|||+|.|+. .+...+...+....|.++|.++.-++.+++... + .++. .|-.+.+.+..
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga---~---~~i~~~~~~~~~~~~~~--------- 96 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA---D---HVVDARRDPVKQVMELT--------- 96 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC---S---EEEETTSCHHHHHHHHT---------
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc---c---eeecCcccHHHHHHHhh---------
Confidence 3467999998754 333344444455589999999999999988643 1 2222 23344433332
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+..+|+||-.+ + ....++...+.|+++|.+++
T Consensus 97 ---------------------~~~g~d~vid~~--g--------------~~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 97 ---------------------RGRGVNVAMDFV--G--------------SQATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp ---------------------TTCCEEEEEESS--C--------------CHHHHHHGGGGEEEEEEEEE
T ss_pred ---------------------CCCCceEEEEec--C--------------cchHHHHHHHHHhCCCEEEE
Confidence 135699888622 2 15678899999999999885
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.58 E-value=0.057 Score=49.31 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=63.7
Q ss_pred CCCCeEEEEcC-C-CchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-----cccCCCccE
Q 004133 67 SPPPQILVPGC-G-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----VFMDETFDV 138 (772)
Q Consensus 67 ~~~~~ILDlGC-G-~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-----~~~~~sfDv 138 (772)
+++.+||-+|| | .|.++..+++. |...|+.+|.++.-++.+++.- .. .++..+-.+.. ......||+
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~G----a~-~~i~~~~~~~~~~~~~~~~~~~~d~ 100 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG----AD-YVINASMQDPLAEIRRITESKGVDA 100 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT----CS-EEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcC----Cc-eeeccCCcCHHHHHHHHhhcccchh
Confidence 68899999997 3 45555655554 7778999999998887775432 11 22222211111 012356999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|++... -...++...+.|+|||+++++.+.
T Consensus 101 vid~~g-------------~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 101 VIDLNN-------------SEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEESCC-------------CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhcccc-------------cchHHHhhhhhcccCCEEEEeccc
Confidence 987432 135677889999999999888654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.52 E-value=0.15 Score=45.95 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=62.2
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+|||+|.|+- .+...+.... ..+|.+++.++.=++.+++ +|.. .-+.....|..+-++...
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~-~Ga~--~~~~~~~~~~~~~~~~~~---------- 91 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE-LGAD--LVVNPLKEDAAKFMKEKV---------- 91 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH-TTCS--EEECTTTSCHHHHHHHHH----------
T ss_pred CCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh-cCcc--eecccccchhhhhccccc----------
Confidence 34568999998754 4444555554 3589999999999999977 5652 111111124455555543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+|.+++|. . ..+.+..+.+.|+++|.+++-
T Consensus 92 ----------------------~~~~~~v~~~--~--------------~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 92 ----------------------GGVHAAVVTA--V--------------SKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ----------------------SSEEEEEESS--C--------------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ----------------------CCCceEEeec--C--------------CHHHHHHHHHHhccCCceEec
Confidence 2355555543 1 156789999999999998863
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.88 E-value=0.17 Score=44.16 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=42.4
Q ss_pred eEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHH--HHHHhh
Q 004133 545 KAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI--KFVREM 608 (772)
Q Consensus 545 ~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~--~~l~~~ 608 (772)
+|+|+|+| |-.+...|.+. +..|.+||.||+.++-+++.++ ..++.||+. +++++.
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~~~~------~~vi~Gd~~~~~~l~~~ 61 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEID------ALVINGDCTKIKTLEDA 61 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCS------SEEEESCTTSHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhhhhh------hhhccCcccchhhhhhc
Confidence 68999987 33666666655 3589999999999988877776 378999986 455554
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=92.72 E-value=0.4 Score=50.37 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=74.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-------------CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-------------FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-------------~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~ 604 (772)
....+|+.-.+|+|.+...+.++.. ...+.++|+|+....+|+-.+ |. ..+...+..+|.+..
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~-~~~~~~i~~~d~l~~ 239 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI-GTDRSPIVCEDSLEK 239 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC-CSSCCSEEECCTTTS
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC-ccccceeecCchhhh
Confidence 3457899999999977665554432 135999999999999999765 33 234567777776531
Q ss_pred HHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCCCCC------CCcCCcCCCcHHHHHHHH
Q 004133 605 VREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSSSG------MTCPAADFVEGSFLLTVK 677 (772)
Q Consensus 605 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~-~~~d~~~g------~s~Pp~~f~~~~fl~~~~ 677 (772)
. ...+||+||..- ++...... -..++..-.+.-|++.+.
T Consensus 240 ---~-------------------------------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~ 285 (425)
T d2okca1 240 ---E-------------------------------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMM 285 (425)
T ss_dssp ---C-------------------------------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHH
T ss_pred ---h-------------------------------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHH
Confidence 1 136799999733 11000000 000112223456999999
Q ss_pred HccCCCcEEEEEec
Q 004133 678 DALSEQGLFIVNLV 691 (772)
Q Consensus 678 ~~L~~~Gilv~Nl~ 691 (772)
..|++||.+++=+.
T Consensus 286 ~~Lk~~G~~~iI~p 299 (425)
T d2okca1 286 LMLKTGGRAAVVLP 299 (425)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HhcCCCCeEEEEec
Confidence 99999997776553
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.71 E-value=0.33 Score=44.31 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=69.6
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
-+|.+|+|||.| .|.-+.-....+ ...|++.|.+++.++-.+..|+ .++.....+-...-+..
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~----~~~~~~~~~~~~l~~~~----------- 93 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFG----SRVELLYSNSAEIETAV----------- 93 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG----GGSEEEECCHHHHHHHH-----------
T ss_pred CCCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhc----ccceeehhhhhhHHHhh-----------
Confidence 367899999999 454444444444 4699999999999998888876 34666666654443333
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...|+||--+--+- .++|.+++++.++. ++||.++| -+.
T Consensus 94 ----------------------~~aDivI~aalipG------~~aP~lIt~~mv~~----Mk~GSVIV-Dva 132 (168)
T d1pjca1 94 ----------------------AEADLLIGAVLVPG------RRAPILVPASLVEQ----MRTGSVIV-DVA 132 (168)
T ss_dssp ----------------------HTCSEEEECCCCTT------SSCCCCBCHHHHTT----SCTTCEEE-ETT
T ss_pred ----------------------ccCcEEEEeeecCC------cccCeeecHHHHhh----cCCCcEEE-Eee
Confidence 34799998664431 25788999887764 55665554 443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.06 E-value=0.14 Score=46.31 Aligned_cols=95 Identities=12% Similarity=0.176 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc----cccCCCccEEE
Q 004133 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----VFMDETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~-G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~----~~~~~sfDvVi 140 (772)
+++.+||-+|||. |.++..+++. |. +|+++|.++.-++.+++.- . -.++..+-.+.. ....+.+++|+
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~G----a-~~~i~~~~~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLG----A-SLTVNARQEDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT----C-SEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccC----c-cccccccchhHHHHHHHhhcCCccccc
Confidence 6889999999987 4455666665 74 7999999998888775432 1 122221111110 01123333443
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+.+ ....++...+.|++||+++++...
T Consensus 100 ~~~--------------~~~~~~~~~~~l~~~G~iv~~G~~ 126 (166)
T d1llua2 100 TAV--------------SNSAFGQAIGMARRGGTIALVGLP 126 (166)
T ss_dssp CCS--------------CHHHHHHHHTTEEEEEEEEECCCC
T ss_pred ccc--------------cchHHHHHHHHhcCCcEEEEEEec
Confidence 322 135678889999999999887543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=91.90 E-value=0.58 Score=46.33 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=56.3
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccccc
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l 148 (772)
++|||+-||-|.++.-|...|+.-+.++|+.+.+++..+.++ .-...+.|++++..-.-...|+++.......+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~-----~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~f 74 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----SAKLIKGDISKISSDEFPKCDGIIGGPPCQSW 74 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC-----CSEEEESCTTTSCGGGSCCCSEEEECCCCTTT
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----CCCCccCChhhCCHhHcccccEEeeccccccc
Confidence 479999999999999888889977889999998887665444 24678899999862223468999865544433
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.78 E-value=0.17 Score=46.06 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=62.8
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEE--EEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKV--HITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v--~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+|||+|.|+. .+...+........|.+++.++.-.+.|++ ||.. .-+.. ...+..+.++...
T Consensus 27 ~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~-lGa~--~~i~~~~~~~~~~~~~~~~~-------- 95 (176)
T d2fzwa2 27 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE-FGAT--ECINPQDFSKPIQEVLIEMT-------- 95 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-HTCS--EEECGGGCSSCHHHHHHHHT--------
T ss_pred CCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH-hCCc--EEEeCCchhhHHHHHHHHHc--------
Confidence 44567999998744 444445555555689999999999999986 4642 11110 0123344444433
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
+..+|+||--+ + ....++.+...++++|.+++-
T Consensus 96 -----------------------~~g~D~vid~~--G--------------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 96 -----------------------DGGVDYSFECI--G--------------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp -----------------------TSCBSEEEECS--C--------------CHHHHHHHHHTBCTTTCEEEE
T ss_pred -----------------------CCCCcEeeecC--C--------------CHHHHHHHHHhhcCCceeEEE
Confidence 35699998622 2 157788889999988766543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.62 E-value=0.16 Score=50.49 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=47.7
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~ 113 (772)
..+...+.+... .+++.|||+-||+|+.+......|. +.+|+|+++..++.+++|...
T Consensus 237 ~~L~~rlI~~~s----~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 237 AKLPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp THHHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred hHHHHHhhhhcc----cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 355555666554 4889999999999999998888885 699999999999999888743
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.61 E-value=0.46 Score=42.76 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=72.7
Q ss_pred eEEEEcCCC--chhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 71 QILVPGCGN--SRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 71 ~ILDlGCG~--G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
+|+-+|||. |.++..|.+.|+ .+|+++|.++..++.+++.. .+.....+... ..+...|+|+..-..+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-----~~~~~~~~~~~---~~~~~~dlIila~p~~- 73 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----IIDEGTTSIAK---VEDFSPDFVMLSSPVR- 73 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----SCSEEESCGGG---GGGTCCSEEEECSCHH-
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-----cchhhhhhhhh---hhccccccccccCCch-
Confidence 589999987 334556666675 47999999999998886543 11122222222 2234678887533222
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCCCC
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKS 208 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~ 208 (772)
....+++++...++++-.++-+.-......+.+...... ..+..|++.+.+
T Consensus 74 ---------~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~-~~i~~hPm~G~e 124 (171)
T d2g5ca2 74 ---------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGGHPIAGTE 124 (171)
T ss_dssp ---------HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECEEEECCCS
T ss_pred ---------hhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc-cccccccccccc
Confidence 257889999999999877765554444444333332222 245667776544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.51 E-value=0.17 Score=45.95 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC
Q 004133 541 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 588 (772)
Q Consensus 541 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~ 588 (772)
....+|||+|.| .|.+...+.+.+ ..+|.+++.++.-++.|+++ |.
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l-Ga 72 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM-GA 72 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH-TC
T ss_pred CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc-CC
Confidence 456789999987 445555555554 46999999999999999875 54
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.11 E-value=0.22 Score=47.93 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=45.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV 112 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~ 112 (772)
.+...+.+... .+++.|||.-||+|+.+....+.|- +.+|+|+++..++.|++|..
T Consensus 200 ~L~~~lI~~~s----~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC----CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 44444555554 4789999999999999988888774 79999999999999988863
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.88 E-value=0.53 Score=42.55 Aligned_cols=47 Identities=28% Similarity=0.273 Sum_probs=35.0
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC
Q 004133 541 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 588 (772)
Q Consensus 541 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~ 588 (772)
....+|||+|.|++ .+...+.......+|.++|.++.=++.|++ ||-
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~GA 74 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FGA 74 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTC
T ss_pred CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH-cCC
Confidence 44567999999875 444444555555689999999999999977 564
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.60 E-value=0.48 Score=42.53 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=68.2
Q ss_pred CeEEEEcCCC--chhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 70 PQILVPGCGN--SRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 70 ~~ILDlGCG~--G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++|.-+|+|+ +.++..|.+.|+ +|++.|.++..++.+++... +.....+... -...|+|+..-.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~-----~~~~~~~~~~-----~~~~DiIilavp--- 66 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL-----VDEAGQDLSL-----LQTAKIIFLCTP--- 66 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS-----CSEEESCGGG-----GTTCSEEEECSC---
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc-----cceeeeeccc-----ccccccccccCc---
Confidence 4788899984 455667777788 69999999998887755321 1111112221 245788875221
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCCC
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 207 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~ 207 (772)
. .....+++++...|+++-.++-..-......... .....+| +..|.+...
T Consensus 67 --~-----~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~-~~~h~~~~~ 117 (165)
T d2f1ka2 67 --I-----QLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPA-SQLWSGF-IGGHPMAGT 117 (165)
T ss_dssp --H-----HHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHH-HHHSTTC-EEEEECCCC
T ss_pred --H-----hhhhhhhhhhhhhcccccceeeccccchHHHHHH-HHhhccc-ccceeeecc
Confidence 1 1267899999999999887765543333322222 1222233 456666543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.36 E-value=0.24 Score=44.68 Aligned_cols=39 Identities=23% Similarity=0.092 Sum_probs=32.9
Q ss_pred eEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHh
Q 004133 545 KAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 545 ~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~ 585 (772)
||.+||+| |++++..|.+. +.+|+++|.++..++.|++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~ 42 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER 42 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHh
Confidence 68999999 88888888765 35899999999999988664
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.90 E-value=2 Score=38.62 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=35.3
Q ss_pred CCCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc
Q 004133 541 GKSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF 586 (772)
Q Consensus 541 ~~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F 586 (772)
.+...|||+|.||+ .+...+...+...+|.+++.++.-.+.|++..
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G 73 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 73 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence 44567999999866 34445555666679999999999999998774
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=89.66 E-value=0.49 Score=48.65 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-------CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-------FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDV 138 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-------~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDv 138 (772)
.+...|+|+|+|+|.++..+... . ..+++-++.|+...+..+++.. ...++.|. .|+.+++ ...-+
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~-~~~~i~w~-~~~~~~~----~~~g~ 151 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA-GIRNIHWH-DSFEDVP----EGPAV 151 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST-TCSSEEEE-SSGGGSC----CSSEE
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc-ccccceec-cChhhcc----cCCeE
Confidence 34568999999999999776553 1 2258999999987776655543 33455553 3344433 22368
Q ss_pred EEeccccccccc
Q 004133 139 ILDKGGLDALME 150 (772)
Q Consensus 139 Vi~~~~l~~l~~ 150 (772)
|+++-.||+++.
T Consensus 152 iiaNE~fDAlPv 163 (365)
T d1zkda1 152 ILANEYFDVLPI 163 (365)
T ss_dssp EEEESSGGGSCC
T ss_pred EEecccCccccc
Confidence 999999999976
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.42 E-value=0.22 Score=45.11 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc--cccCCCccEEEec
Q 004133 67 SPPPQILVPGCGN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--VFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~-G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~--~~~~~sfDvVi~~ 142 (772)
+++++||-+|||. |.++..+++. |. +++++|.++.-.+.+++.- .. .++ |..+.. ......+|++++.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lG----ad-~~i--~~~~~~~~~~~~~~~D~vid~ 100 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALG----AD-EVV--NSRNADEMAAHLKSFDFILNT 100 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHT----CS-EEE--ETTCHHHHHTTTTCEEEEEEC
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccC----Cc-EEE--ECchhhHHHHhcCCCceeeee
Confidence 6899999999986 5566777765 76 5778999988777664432 11 222 222211 1233579998864
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
-. . ...++...++|+++|+++++...
T Consensus 101 ~g-----~--------~~~~~~~~~~l~~~G~iv~~G~~ 126 (168)
T d1uufa2 101 VA-----A--------PHNLDDFTTLLKRDGTMTLVGAP 126 (168)
T ss_dssp CS-----S--------CCCHHHHHTTEEEEEEEEECCCC
T ss_pred ee-----c--------chhHHHHHHHHhcCCEEEEeccC
Confidence 32 1 12456778899999999987643
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=1.2 Score=42.94 Aligned_cols=82 Identities=10% Similarity=0.087 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc---------ccCCC
Q 004133 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV---------FMDET 135 (772)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~---------~~~~s 135 (772)
.+..+|--|++.| .++..|++.|+ +|+.+|.++.-++...+.....+.++.++.+|+++... -..+.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 4678888899987 46678888898 69999999999988877776667789999999998641 12467
Q ss_pred ccEEEeccccccccc
Q 004133 136 FDVILDKGGLDALME 150 (772)
Q Consensus 136 fDvVi~~~~l~~l~~ 150 (772)
.|+++.+........
T Consensus 85 idilinnag~~~~~~ 99 (244)
T d1yb1a_ 85 VSILVNNAGVVYTSD 99 (244)
T ss_dssp CSEEEECCCCCCCCC
T ss_pred CceeEeecccccccc
Confidence 899887776654443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.06 E-value=0.66 Score=42.00 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=61.3
Q ss_pred CCCeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
...+|||.|.||| .+..-+.+.. +.+|.+++.++.-.+.+++. |- +.-+...-.|-.+-+++..
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l-Ga--~~vi~~~~~d~~~~v~~~t---------- 93 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA-GA--WQVINYREEDLVERLKEIT---------- 93 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH-TC--SEEEETTTSCHHHHHHHHT----------
T ss_pred CCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc-CC--eEEEECCCCCHHHHHHHHh----------
Confidence 3468999987765 4444555554 36999999999999999875 53 2212112234455555543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+..+|+|+ |.-. .+.+......|+++|.+++
T Consensus 94 --------------------~g~g~d~v~-d~~g----------------~~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 94 --------------------GGKKVRVVY-DSVG----------------RDTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp --------------------TTCCEEEEE-ECSC----------------GGGHHHHHHTEEEEEEEEE
T ss_pred --------------------CCCCeEEEE-eCcc----------------HHHHHHHHHHHhcCCeeee
Confidence 146789755 3322 2346778889999997764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.51 E-value=1 Score=41.33 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=62.2
Q ss_pred CCCCeEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
+....|||.|.+ .|..+.-+.+.+....|.++.-.++-.....+.+|. +.-+.....|..+.+++..
T Consensus 29 G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga--d~vi~~~~~~~~~~~~~~~--------- 97 (187)
T d1vj1a2 29 GSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF--DAAVNYKTGNVAEQLREAC--------- 97 (187)
T ss_dssp TSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC--SEEEETTSSCHHHHHHHHC---------
T ss_pred CCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc--eEEeeccchhHHHHHHHHh---------
Confidence 334679998854 457777777777655677666555554444555564 3223333335566666654
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
+..+|+|+- . .+ .+.++...+.|+++|.++.
T Consensus 98 ----------------------~~GvDvv~D-~-----vG-----------g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 98 ----------------------PGGVDVYFD-N-----VG-----------GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp ----------------------TTCEEEEEE-S-----SC-----------HHHHHHHHTTEEEEEEEEE
T ss_pred ----------------------ccCceEEEe-c-----CC-----------chhHHHHhhhccccccEEE
Confidence 356999973 1 11 5678899999999999874
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.42 E-value=0.66 Score=41.92 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=61.2
Q ss_pred CeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC---C----CCCeEEEEccHHHHHHhhcccCcc
Q 004133 544 VKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---Q----DKSLKVHITDGIKFVREMKSSSAT 614 (772)
Q Consensus 544 ~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~---~----~~rl~v~i~Dg~~~l~~~~~~~~~ 614 (772)
+++.|||+|.. .++..|... +.+|.+++.++.-++..++.-... + ......+..|..+.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------- 70 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--------- 70 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH---------
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh---------
Confidence 68999999944 666666665 359999999999888877653211 0 111122233433332
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...|+||+=+. .....+.++.++..|+++-++++
T Consensus 71 ---------------------------~~aD~iii~v~-------------~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 71 ---------------------------KDADVILIVVP-------------AIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ---------------------------TTCSEEEECSC-------------GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ---------------------------cCCCEEEEEEc-------------hhHHHHHHHHhhhccCCCCEEEE
Confidence 33799998321 22358899999999998886653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.31 E-value=0.39 Score=46.64 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=46.2
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR 113 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~ 113 (772)
.+...+.+... .+++.|||.-||+|..+......|- +.+|+|+++..++.|++|...
T Consensus 195 ~L~~~~I~~~s----~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 195 AVIERLVRALS----HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred hHHHHHHHhhc----CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 34444555443 4799999999999999988888775 799999999999999988753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=1.4 Score=42.59 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCccc---------ccC
Q 004133 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQV---------FMD 133 (772)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~---------~~~ 133 (772)
++..+|-.|++.| .++..|++.|+ +|+.+|.++..++.+.+.....+ .++.++.+|+++... -.-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678999999887 35577777898 69999999999988877665443 357888999998530 112
Q ss_pred CCccEEEeccccc
Q 004133 134 ETFDVILDKGGLD 146 (772)
Q Consensus 134 ~sfDvVi~~~~l~ 146 (772)
+..|+++.+....
T Consensus 88 g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 88 SGVDICINNAGLA 100 (257)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEeccccc
Confidence 6799988765543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=88.08 E-value=1.4 Score=39.97 Aligned_cols=99 Identities=17% Similarity=0.072 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCCCchhH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------cccCCCcc
Q 004133 66 SSPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------VFMDETFD 137 (772)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls-~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~~~~~sfD 137 (772)
.+++++||-+|||...+. ..+++. |..+|+++|.++.-++.+++.- .-.++...-.+.. ....+.+|
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lG-----a~~~i~~~~~d~~~~~~~~~~~~~G~d 99 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG-----ATECLNPKDYDKPIYEVICEKTNGGVD 99 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT-----CSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcC-----CcEEEcCCCchhHHHHHHHHhcCCCCc
Confidence 378999999999875544 445554 8888999999998888885432 1122211111100 02235689
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhcccc-CeEEEEEEcCc
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS-GGKFVCLTLAE 182 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkp-GG~~ii~~~~~ 182 (772)
+|++...- ...+++....+++ +|+++++-+..
T Consensus 100 ~vid~~g~-------------~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 100 YAVECAGR-------------IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp EEEECSCC-------------HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred EEEEcCCC-------------chHHHHHHHHHHHhcCceEEEEEec
Confidence 88863321 3455666666655 69998887653
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.05 E-value=0.95 Score=44.14 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=74.7
Q ss_pred CCeE-EEEcCCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc---------ccCCC
Q 004133 69 PPQI-LVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV---------FMDET 135 (772)
Q Consensus 69 ~~~I-LDlGCG~G~---ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~---------~~~~s 135 (772)
+.+| |--|++.|. .+..|++.+...|+.++.++.-++.+.+.......++.++.+|+.+... -.-+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 4566 666766663 3456666633479999999999988888776677789999999998641 01257
Q ss_pred ccEEEecccccccccCccc-hHH-----------HHHHHHHHHhccccCeEEEEEE
Q 004133 136 FDVILDKGGLDALMEPELG-HKL-----------GNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~-~~~-----------~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.|++|.+..+.......+. ... .-.+.+.+...|+++|+++.++
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 9999987765433221111 111 2345677778888999987765
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=87.86 E-value=0.55 Score=46.87 Aligned_cols=73 Identities=10% Similarity=-0.049 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.+.+|||+-||-|.++.-|...|+.-+.++|+.+.+++..+.++. .. .+.|+.++....-..+|+++......
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~----~~--~~~Di~~~~~~~~~~~Dll~ggpPCq 82 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG----EK--PEGDITQVNEKTIPDHDILCAGFPCQ 82 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS----CC--CBSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC----CC--CcCchhcCchhhcceeeeeecccccc
Confidence 578999999999999999988899778889999999987766652 21 25788887522234689888655443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=87.67 E-value=0.76 Score=47.06 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=40.5
Q ss_pred ccCCCccEEEecccccccccCc---------------cch-----------HHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 131 FMDETFDVILDKGGLDALMEPE---------------LGH-----------KLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~---------------~~~-----------~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
||+++.+++++..++||+..-. .++ .....+|+.=++-|+|||+++++.++.+.
T Consensus 135 fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~ 214 (359)
T d1m6ex_ 135 FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRS 214 (359)
T ss_dssp SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSS
T ss_pred CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCC
Confidence 7889999999999999986311 000 12556777777889999999999887643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=87.38 E-value=0.74 Score=39.58 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=37.5
Q ss_pred CeEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHH
Q 004133 544 VKAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 603 (772)
Q Consensus 544 ~~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~ 603 (772)
++++|+|+| |-.++..|.... ..|++||.||+.++.+++.+ ..++++|+.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d~~~~~~~~~~~-------~~~~~gd~~~ 53 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYASYA-------THAVIANATE 53 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHHTTTTC-------SEEEECCTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCcHHHHHHHHHhC-------Ccceeeeccc
Confidence 468899887 336666776653 58999999999999886542 3677888754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.10 E-value=1.2 Score=40.10 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCC--chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------c-ccCCCc
Q 004133 67 SPPPQILVPGCGN--SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------V-FMDETF 136 (772)
Q Consensus 67 ~~~~~ILDlGCG~--G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~-~~~~sf 136 (772)
+|+.+||-.|+|. |.+...+++. |. +|+++|.|+.-.+.+++.-. . .+.|..+.+ . -....+
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa----~---~vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGA----W---QVINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTC----S---EEEETTTSCHHHHHHHHTTTCCE
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCC----e---EEEECCCCCHHHHHHHHhCCCCe
Confidence 6889999997765 6777888877 76 69999999998888754321 1 222333322 0 124578
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
|+|++...- ..+....+.|+++|++++...
T Consensus 99 d~v~d~~g~--------------~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 99 RVVYDSVGR--------------DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp EEEEECSCG--------------GGHHHHHHTEEEEEEEEECCC
T ss_pred EEEEeCccH--------------HHHHHHHHHHhcCCeeeeccc
Confidence 988874422 245778889999999877543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.10 E-value=1.8 Score=41.56 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc---------ccCCC
Q 004133 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV---------FMDET 135 (772)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~---------~~~~s 135 (772)
.+..+|-.|.+.| ..+..|++.|+ +|+.+|.++..++.+.+.....+.++.++.+|+++... -.-+.
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 4678888898776 34456666687 69999999999988877776666689999999998530 12368
Q ss_pred ccEEEecccccc
Q 004133 136 FDVILDKGGLDA 147 (772)
Q Consensus 136 fDvVi~~~~l~~ 147 (772)
.|+++.+.....
T Consensus 88 iDilvnnag~~~ 99 (251)
T d2c07a1 88 VDILVNNAGITR 99 (251)
T ss_dssp CCEEEECCCCCC
T ss_pred ceeeeecccccc
Confidence 998887665443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.98 E-value=0.87 Score=41.25 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=59.6
Q ss_pred CCCCeEEEEcccc--cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGA--GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~--G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+..+|||.|..+ |.+..-+...+. .++.++.-+++-.+.++++ |. +.-+...-.|-.+.+.+..
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~~~l~~~-Ga--~~vi~~~~~~~~~~v~~~t--------- 90 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-GV--EYVGDSRSVDFADEILELT--------- 90 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-CC--SEEEETTCSTHHHHHHHHT---------
T ss_pred CCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccccccccc-cc--cccccCCccCHHHHHHHHh---------
Confidence 3456899988533 344444555543 5777777788888999764 54 2111112234445555543
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+..+|+|+- .- + .+.++.+.+.|+++|.++.
T Consensus 91 ---------------------~~~g~d~v~d-~~-g---------------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 91 ---------------------DGYGVDVVLN-SL-A---------------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp ---------------------TTCCEEEEEE-CC-C---------------THHHHHHHHTEEEEEEEEE
T ss_pred ---------------------CCCCEEEEEe-cc-c---------------chHHHHHHHHhcCCCEEEE
Confidence 1467999984 11 1 3457778899999999885
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.73 E-value=1.9 Score=38.48 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=34.2
Q ss_pred CCCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC
Q 004133 541 GKSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF 588 (772)
Q Consensus 541 ~~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~ 588 (772)
....+|||+|.|+ |.+...+.+.+. .++.+++-++.-.+.|++ +|.
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~~~~~~~a~~-lGa 75 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTSEAKREAAKA-LGA 75 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH-HTC
T ss_pred CCCCEEEEeccchHHHHHHHHhhccc-ccchhhccchhHHHHHhc-cCC
Confidence 5567899999863 566666666664 577799999999999875 453
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.61 E-value=0.99 Score=38.83 Aligned_cols=86 Identities=19% Similarity=0.090 Sum_probs=55.3
Q ss_pred CeEEEEcCCCchhHHHHHH----cCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc---cccCCCccEEEec
Q 004133 70 PQILVPGCGNSRLSEHLYD----AGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---VFMDETFDVILDK 142 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~----~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~---~~~~~sfDvVi~~ 142 (772)
++|+-+|+ |.++..+++ .|+ +|+.+|.++..++.+.... ...++.+|+++.. ...-...|.+++.
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 46788877 556555544 476 6999999999988775543 5688999999854 1223567877762
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCe
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 173 (772)
. .+++ ...+...+.+.+.+.-
T Consensus 73 t-----~~d~-----~N~~~~~~~k~~~~~~ 93 (132)
T d1lssa_ 73 T-----GKEE-----VNLMSSLLAKSYGINK 93 (132)
T ss_dssp C-----SCHH-----HHHHHHHHHHHTTCCC
T ss_pred C-----CcHH-----HHHHHHHHHHHcCCce
Confidence 1 1111 2334455666777763
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.38 E-value=1 Score=40.09 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCCchhH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------cccCCCccE
Q 004133 67 SPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------VFMDETFDV 138 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls-~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~~~~~sfDv 138 (772)
+|+.+||-.|||.-.+. ..+++. |. +|+++|.++.-++.+++.- .... .|..+.. ....+.+|+
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~G------a~~~-~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELG------ADLV-VNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT------CSEE-ECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcC------ccee-cccccchhhhhcccccCCCceE
Confidence 68999999999885444 555555 55 7999999998888775421 1222 1221111 012334444
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|++.+ ....+....+.|+|||+++++...
T Consensus 98 v~~~~--------------~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 98 VVTAV--------------SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp EESSC--------------CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred EeecC--------------CHHHHHHHHHHhccCCceEecccc
Confidence 43321 135788999999999999887544
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=86.21 E-value=0.94 Score=43.92 Aligned_cols=113 Identities=13% Similarity=0.003 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-----------------------------------------CCeEEEEeCCHHHHH
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-----------------------------------------FHGITNVDFSKVVIS 105 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-----------------------------------------~~~V~gvDiS~~~I~ 105 (772)
..+..++|.-||+|++.++.+-.. ...+.|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 345689999999999987765420 013678888888888
Q ss_pred HHH---HHhccC--CCCcEEEEeeccCccc----ccCCCccEEEecccccccccCcc--chHHHHHHHHHHHhccccCeE
Q 004133 106 DML---RRNVRD--RSDMRWRVMDMTSMQV----FMDETFDVILDKGGLDALMEPEL--GHKLGNQYLSEVKRLLKSGGK 174 (772)
Q Consensus 106 ~a~---~~~~~~--~~~v~f~~~D~~~l~~----~~~~sfDvVi~~~~l~~l~~~~~--~~~~~~~~l~ei~rvLkpGG~ 174 (772)
.++ ++.... ...+++.+.|+++... .+....++||++--.-.=...+. ....+..+...+.++|.....
T Consensus 129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~ 208 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 208 (249)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcE
Confidence 774 233222 3468899999877541 12456789998877655433221 224578888899999976666
Q ss_pred EEEEE
Q 004133 175 FVCLT 179 (772)
Q Consensus 175 ~ii~~ 179 (772)
+++..
T Consensus 209 ~~it~ 213 (249)
T d1o9ga_ 209 IAVTD 213 (249)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 66653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=85.91 E-value=0.45 Score=43.42 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCCch-hHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSR-LSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~-ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
-++.+|+-+|+|.-. .+...+.. |. +|+.+|.++..+++....+. .++++...+-..+. -.-...|+||..-.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~---~~~~~~~~~~~~l~-~~~~~aDivI~aal 104 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG---SRVELLYSNSAEIE-TAVAEADLLIGAVL 104 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGSEEEECCHHHHH-HHHHTCSEEEECCC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc---ccceeehhhhhhHH-HhhccCcEEEEeee
Confidence 357899999999854 44555554 65 79999999999988876653 24566655544443 22346899997554
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
+.--..|. -+-+++.+.+|||.+++=
T Consensus 105 ipG~~aP~-------lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 105 VPGRRAPI-------LVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp CTTSSCCC-------CBCHHHHTTSCTTCEEEE
T ss_pred cCCcccCe-------eecHHHHhhcCCCcEEEE
Confidence 43222221 233678889999998753
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=85.55 E-value=2.4 Score=41.95 Aligned_cols=115 Identities=15% Similarity=0.051 Sum_probs=75.9
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeeccCc-c-
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSM-Q- 129 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~----~~~v~f~~~D~~~l-~- 129 (772)
.+...+.. ....|+.+|||-=.-...|...+...++-+|. +.+++.-++...+. ..+..++..|+.+. .
T Consensus 81 ~~~~~~~~----g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~ 155 (297)
T d2uyoa1 81 YFNNAVID----GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPP 155 (297)
T ss_dssp HHHHHHHT----TCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHH
T ss_pred HHHHHHhh----CCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHH
Confidence 34455543 34567779999988776663222335788885 66665444444322 22467788888752 1
Q ss_pred -----cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 130 -----VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 130 -----~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+|..+.--+++.-+++.|+...+ ..++|+.+.+...||+.+++-..
T Consensus 156 ~L~~~g~d~~~ptl~i~EGvl~YL~~~~-----~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 156 ALRSAGFDPSARTAWLAEGLLMYLPATA-----QDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp HHHHTTCCTTSCEEEEECSCGGGSCHHH-----HHHHHHHHHHTCCTTCEEEEECC
T ss_pred HHHhcCCCCCCCEEEEEccccccCCHHH-----HHHHHHHHHHhCCCCCEEEEEec
Confidence 23334456888899999987644 88999999999999999877543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=85.32 E-value=2.1 Score=41.27 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc---------ccCCC
Q 004133 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV---------FMDET 135 (772)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~---------~~~~s 135 (772)
.+..+|--|.+.|. .+..|++.|+ +|+.+|.++..++.+.+.....+.++.++.+|+++... -.-+.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46789999988773 5677888897 69999999999998887776666788999999998530 01267
Q ss_pred ccEEEeccc
Q 004133 136 FDVILDKGG 144 (772)
Q Consensus 136 fDvVi~~~~ 144 (772)
.|+++.+..
T Consensus 83 iDilVnnaG 91 (260)
T d1zema1 83 IDFLFNNAG 91 (260)
T ss_dssp CCEEEECCC
T ss_pred CCeehhhhc
Confidence 998886644
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.12 E-value=2 Score=38.90 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=63.2
Q ss_pred CCCCeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+..+|||.|.||| ....-|.+... .+|.++.-+++-.+.+++. |. +.-+.-.-.|-.+.+.+..
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~G-a~vi~~~~~~~~~~~~~~~-Ga--~~vi~~~~~~~~~~~~~~~--------- 94 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKIAYLKQI-GF--DAAFNYKTVNSLEEALKKA--------- 94 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHT-TC--SEEEETTSCSCHHHHHHHH---------
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccC-CEEEEeCCCHHHHHHHHhh-hh--hhhcccccccHHHHHHHHh---------
Confidence 44578999999775 55556666654 5999999999999998776 43 1111111123333333322
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
....+|+||--+ + .+.++.+.+.|+++|.+++
T Consensus 95 ---------------------~~~Gvd~v~D~v--G---------------~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 95 ---------------------SPDGYDCYFDNV--G---------------GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp ---------------------CTTCEEEEEESS--C---------------HHHHHHHGGGEEEEEEEEE
T ss_pred ---------------------hcCCCceeEEec--C---------------chhhhhhhhhccCCCeEEe
Confidence 135699987411 1 6688999999999998885
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=85.12 E-value=3.1 Score=40.03 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc----------ccCC
Q 004133 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV----------FMDE 134 (772)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~----------~~~~ 134 (772)
.+..+|--|++.| ..+..|++.|+ +|+.+|.++.-++.+.+.....+.++.++.+|+++... ...+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 4678999998877 35677778898 69999999999998877776666788899999987430 0124
Q ss_pred CccEEEeccccc
Q 004133 135 TFDVILDKGGLD 146 (772)
Q Consensus 135 sfDvVi~~~~l~ 146 (772)
..|+++.+....
T Consensus 86 ~idilvnnAG~~ 97 (259)
T d2ae2a_ 86 KLNILVNNAGIV 97 (259)
T ss_dssp CCCEEEECCCCC
T ss_pred CceEEEECCcee
Confidence 689998765543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.76 E-value=1.5 Score=42.30 Aligned_cols=111 Identities=11% Similarity=0.091 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCCc---hhHHHHHHcCCCeEEE-EeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc---------ccCC
Q 004133 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITN-VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV---------FMDE 134 (772)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~La~~g~~~V~g-vDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~---------~~~~ 134 (772)
.+..+|-.|.+.| ..+..|++.|+. |+. .+-++..++.+.+.....+.++.++.+|+++... ..-+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence 5678999997776 666778888985 654 5678877887777776667789999999988530 1235
Q ss_pred CccEEEecccccccccCccc-hHH-----------HHHHHHHHHhccccCeEEEEEE
Q 004133 135 TFDVILDKGGLDALMEPELG-HKL-----------GNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~-~~~-----------~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..|+++.+....+..+.++. ... .-.+.+.+...|+.+|..+++.
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 79998876665443322211 110 3345566666777777666553
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.75 E-value=2.2 Score=38.90 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=59.8
Q ss_pred CCeEEEEc--CCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------cccCCCccEE
Q 004133 69 PPQILVPG--CGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------VFMDETFDVI 139 (772)
Q Consensus 69 ~~~ILDlG--CG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~~~~~sfDvV 139 (772)
+.+||-.| -|-|..+..+++. |...|++++-+++-...+.+... .. .+.|..+.. ......+|+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g---ad---~vi~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG---FD---AAVNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC---CS---EEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc---ce---EEeeccchhHHHHHHHHhccCceEE
Confidence 37899988 4668999999986 77778888888766555533331 11 222333321 1123569999
Q ss_pred EecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++.-. ...++...++|++||+++++-
T Consensus 105 ~D~vG--------------g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 105 FDNVG--------------GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EESSC--------------HHHHHHHHTTEEEEEEEEEC-
T ss_pred EecCC--------------chhHHHHhhhccccccEEEec
Confidence 86431 256788999999999998764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.43 E-value=1.8 Score=39.25 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCCchhH-HHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-----cccCCCccEE
Q 004133 67 SPPPQILVPGCGNSRLS-EHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-----VFMDETFDVI 139 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls-~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-----~~~~~sfDvV 139 (772)
+++++||-+|||...+. ..+++. |..+|+++|.++.-++.|++.-.. ..+-..|-.+.. ......+|+|
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~----~~in~~~~~~~~~~~~~~~~g~G~d~v 103 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT----ECISPKDSTKPISEVLSEMTGNNVGYT 103 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHHTSCCCEE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc----EEECccccchHHHHHHHHhccccceEE
Confidence 68999999999875544 444444 777899999999999988655321 111111111110 0123568988
Q ss_pred EecccccccccCccchHHHHHHHHHHH-hccccCeEEEEEEcC
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVK-RLLKSGGKFVCLTLA 181 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~-rvLkpGG~~ii~~~~ 181 (772)
+....- ...+++.. .+++.+|+++++...
T Consensus 104 i~~~g~-------------~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 104 FEVIGH-------------LETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp EECSCC-------------HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred EEeCCc-------------hHHHHHHHHHhhcCCeEEEEEEcc
Confidence 763321 23344444 455666999888654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.06 E-value=2.4 Score=40.87 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCCch---hHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc----------ccCC
Q 004133 68 PPPQILVPGCGNSR---LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV----------FMDE 134 (772)
Q Consensus 68 ~~~~ILDlGCG~G~---ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~----------~~~~ 134 (772)
.+.++|--|++.|. .+..|++.|. +|+.+|.++.-++.+.+.......++.+..+|+++... ...+
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 85 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 85 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 47799999988874 6677788898 69999999999988877776666789999999987530 0136
Q ss_pred CccEEEeccccc
Q 004133 135 TFDVILDKGGLD 146 (772)
Q Consensus 135 sfDvVi~~~~l~ 146 (772)
..|+++.+....
T Consensus 86 ~idilvnnAG~~ 97 (259)
T d1xq1a_ 86 KLDILINNLGAI 97 (259)
T ss_dssp CCSEEEEECCC-
T ss_pred Cccccccccccc
Confidence 789988765543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.06 E-value=0.6 Score=46.67 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCC--eEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc--cccCCCccEEEeccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFH--GITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--VFMDETFDVILDKGG 144 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~--~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~--~~~~~sfDvVi~~~~ 144 (772)
+.+|+|+-||-|.++.-|...|+. -+.++|+.+.+++..+.+ .+...+++.|+.++. .++...+|+++....
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n----~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpP 77 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN----FPHTQLLAKTIEGITLEEFDRLSFDMILMSPP 77 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH----CTTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH----CCCCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence 478999999999999888777873 377999999888766544 356778888988765 122346898886554
Q ss_pred cccc
Q 004133 145 LDAL 148 (772)
Q Consensus 145 l~~l 148 (772)
...+
T Consensus 78 Cq~f 81 (343)
T d1g55a_ 78 CQPF 81 (343)
T ss_dssp ----
T ss_pred cccc
Confidence 4333
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=83.73 E-value=3.5 Score=44.07 Aligned_cols=117 Identities=9% Similarity=-0.027 Sum_probs=68.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhC----CC--------------CcEEEEEcCHHHHHHHHHhcCCCCC-----CCeEEEE
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM----PF--------------VGIEAVELDLTMLNLAEDYFGFTQD-----KSLKVHI 598 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~----p~--------------~~i~~VEiDp~v~~vA~~~Fg~~~~-----~rl~v~i 598 (772)
...+|+.-.+|+|.+...+.+++ .. ..+.++|+|+....+|+-.+-+... ..-.+..
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 44689999999997765443332 11 2589999999999999876633210 1112222
Q ss_pred ccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCC---CCCCCcCCcCCCcHHHHH
Q 004133 599 TDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDS---SSGMTCPAADFVEGSFLL 674 (772)
Q Consensus 599 ~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~-~~~d~---~~g~s~Pp~~f~~~~fl~ 674 (772)
+|.+.- . .....+||+||..- ++... ......++..-.+.-|++
T Consensus 244 ~~~l~~--d------------------------------~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~ 291 (524)
T d2ar0a1 244 GNTLGS--D------------------------------GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ 291 (524)
T ss_dssp SCTTSH--H------------------------------HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHH
T ss_pred hhhhhh--c------------------------------ccccccceeEEecCCccccccccchhhhccccccccHHHHH
Confidence 322211 0 01136799999843 11100 011112333334556999
Q ss_pred HHHHccCCCcEEEEEe
Q 004133 675 TVKDALSEQGLFIVNL 690 (772)
Q Consensus 675 ~~~~~L~~~Gilv~Nl 690 (772)
.+.+.|++||.+++=+
T Consensus 292 ~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 292 HIIETLHPGGRAAVVV 307 (524)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhccccCcEEEEE
Confidence 9999999999877654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.72 E-value=0.32 Score=44.83 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCC--chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGN--SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~--G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+||--|++. |..+..+++. |. +|+++.-|+.-.+.+++.-... -+.....+.........+.||+|++.-
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~--vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE--VLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE--EEECC---------CCSCCEEEEEECS
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce--eeecchhHHHHHHHhhccCcCEEEEcC
Confidence 4578999998644 5777888876 76 5899998887777775432110 011111111111112456899998743
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
. ...++...++|++||+++++....
T Consensus 107 g--------------g~~~~~~l~~l~~~Griv~~G~~~ 131 (176)
T d1xa0a2 107 G--------------GRTLATVLSRMRYGGAVAVSGLTG 131 (176)
T ss_dssp T--------------TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred C--------------chhHHHHHHHhCCCceEEEeeccc
Confidence 2 135788999999999999887553
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.69 E-value=2.8 Score=40.52 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCc---hhHHHHHHcCCCeEEEEeCC-HHHHHHHHHHhccCCCCcEEEEeeccCccc---------ccCC
Q 004133 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFS-KVVISDMLRRNVRDRSDMRWRVMDMTSMQV---------FMDE 134 (772)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~La~~g~~~V~gvDiS-~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~---------~~~~ 134 (772)
.+.++|-.|++.| .++..|++.|+ +|+.+|.+ +..++...+.....+.++.+.++|+.+... -..+
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 95 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 95 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence 4679999999887 36677888898 69999876 566666666665667789999999998530 1125
Q ss_pred CccEEEecccccccccCcc-chHH-----------HHHHHHHHHhccccCeEEEEEE
Q 004133 135 TFDVILDKGGLDALMEPEL-GHKL-----------GNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~-~~~~-----------~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..|+++.+..........+ .... .-.+.+.+...|+.+|..+++.
T Consensus 96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 7898887665443322111 1111 3345667777788888777664
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.16 E-value=0.84 Score=41.35 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=58.4
Q ss_pred CCCCeEEEEcC--CCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCc
Q 004133 67 SPPPQILVPGC--GNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETF 136 (772)
Q Consensus 67 ~~~~~ILDlGC--G~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sf 136 (772)
+++++||-.|. |.|.++..+++. |. ++++++-++.-.+.+++. +.. .. .|..+.. ......|
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~----Ga~-~v--i~~~~~~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL----GVE-YV--GDSRSVDFADEILELTDGYGV 95 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT----CCS-EE--EETTCSTHHHHHHHHTTTCCE
T ss_pred CCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccc----ccc-cc--ccCCccCHHHHHHHHhCCCCE
Confidence 67899999873 345667777776 76 588888788766666432 222 22 2222221 0124579
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+|++... ...++.+.++|+++|+++.+.
T Consensus 96 d~v~d~~g--------------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 96 DVVLNSLA--------------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEEEECCC--------------THHHHHHHHTEEEEEEEEECS
T ss_pred EEEEeccc--------------chHHHHHHHHhcCCCEEEEEc
Confidence 99997432 146677889999999998863
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.15 E-value=0.65 Score=45.78 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=45.8
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCCCCCCCcC-CcCCC--
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMTCP-AADFV-- 668 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~-~~d~~~g~s~P-p~~f~-- 668 (772)
.=++++||.++.|+.+. +.++|+|+.|-- ........... ..+++
T Consensus 12 ~~~l~~GD~le~l~~l~-------------------------------~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~ 60 (320)
T d1booa_ 12 NGSMYIGDSLELLESFP-------------------------------EESISLVMTSPPFALQRKKEYGNLEQHEYVDW 60 (320)
T ss_dssp SEEEEESCHHHHGGGSC-------------------------------SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHH
T ss_pred CCEEEehhHHHHHhhCc-------------------------------cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHH
Confidence 34999999999999976 467999999751 11000000000 00111
Q ss_pred cHHHHHHHHHccCCCcEEEEEecCC
Q 004133 669 EGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 669 ~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
-.+.+..+++.|+|+|.+++|+...
T Consensus 61 ~~~~l~~~~rvLk~~G~i~i~~~~~ 85 (320)
T d1booa_ 61 FLSFAKVVNKKLKPDGSFVVDFGGA 85 (320)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHhCcccCcccccccch
Confidence 2457888999999999999998644
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.03 E-value=2.5 Score=35.64 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=54.6
Q ss_pred CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004133 566 FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 645 (772)
Q Consensus 566 ~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 645 (772)
+.+|-+||=|+.+.+..++++.- .+-.+. ...||.+.++... ...||
T Consensus 1 nirILiVdDd~~~~~~l~~~L~~-~g~~v~-~a~~~~~al~~l~-------------------------------~~~~d 47 (122)
T d1kgsa2 1 NVRVLVVEDERDLADLITEALKK-EMFTVD-VCYDGEEGMYMAL-------------------------------NEPFD 47 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHH-TTCEEE-EESSHHHHHHHHH-------------------------------HSCCS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH-CCCEEE-EEcchHHHHHHHH-------------------------------hhCcc
Confidence 46899999999999999998831 111233 5678888877765 25799
Q ss_pred EEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 646 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 646 ~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
+|++|+.-++. -..++++.++..-..--++++
T Consensus 48 lillD~~mp~~-----------~g~~~~~~lr~~~~~~piI~l 79 (122)
T d1kgsa2 48 VVILDIMLPVH-----------DGWEILKSMRESGVNTPVLML 79 (122)
T ss_dssp EEEEESCCSSS-----------CHHHHHHHHHHTTCCCCEEEE
T ss_pred ccccccccccc-----------hhHHHHHHHHhcCCCCcEEEE
Confidence 99999866543 237888888865433345443
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.96 E-value=2.6 Score=35.64 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=53.1
Q ss_pred CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEE--EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCce
Q 004133 567 VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH--ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARV 644 (772)
Q Consensus 567 ~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~--i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 644 (772)
.+|-+||=|+.+.+..++++.- ...+.++ ..||.+.++... ...|
T Consensus 2 irILivDD~~~~~~~l~~~L~~--~~~~~~v~~a~~g~~al~~~~-------------------------------~~~~ 48 (123)
T d1dz3a_ 2 IKVCIADDNRELVSLLDEYISS--QPDMEVIGTAYNGQDCLQMLE-------------------------------EKRP 48 (123)
T ss_dssp EEEEEECSCHHHHHHHHHHHHT--STTEEEEEEESSHHHHHHHHH-------------------------------HHCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEECCHHHHHHHHH-------------------------------hcCC
Confidence 3788999999999999999853 2234433 568888877765 2569
Q ss_pred eEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC
Q 004133 645 DILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 683 (772)
Q Consensus 645 D~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~ 683 (772)
|+|++|+.=++- --.++++.+++.....
T Consensus 49 dlillD~~mP~~-----------dG~e~~~~ir~~~~~~ 76 (123)
T d1dz3a_ 49 DILLLDIIMPHL-----------DGLAVLERIRAGFEHQ 76 (123)
T ss_dssp SEEEEESCCSSS-----------CHHHHHHHHHHHCSSC
T ss_pred CEEEEcCCCCCC-----------CHHHHHHHHHhcCCCC
Confidence 999999966543 2378999998766544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.85 E-value=2 Score=39.48 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCCeEEEEcccc-cHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC
Q 004133 542 KSVKAVVIGLGA-GLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG 587 (772)
Q Consensus 542 ~~~~vLviGlG~-G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg 587 (772)
.|.+|||||.|. |.-+.-....+ ...|++.|+++..++-.+..++
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhc
Confidence 578999999995 44444444444 4699999999999999988874
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=82.77 E-value=2.1 Score=38.68 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCC--chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc-----ccccCCCccE
Q 004133 67 SPPPQILVPGCGN--SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-----QVFMDETFDV 138 (772)
Q Consensus 67 ~~~~~ILDlGCG~--G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l-----~~~~~~sfDv 138 (772)
+++++||-.|++. |..+..+++. |. +|++++-+++-++.+++.- .. ..+.-+-.+. .......+|+
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~G----a~-~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIG----FD-AAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT----CS-EEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhh----hh-hhcccccccHHHHHHHHhhcCCCce
Confidence 6899999989865 5677888877 65 7999999998777664432 11 2222111111 0113456999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|++.-. ...++...+.|++||+++++-
T Consensus 102 v~D~vG--------------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 102 YFDNVG--------------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEESSC--------------HHHHHHHGGGEEEEEEEEECC
T ss_pred eEEecC--------------chhhhhhhhhccCCCeEEeec
Confidence 887321 257789999999999998764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.58 E-value=2.5 Score=37.62 Aligned_cols=96 Identities=15% Similarity=0.014 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCCCc-hhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------cccCCCcc
Q 004133 66 SSPPPQILVPGCGNS-RLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------VFMDETFD 137 (772)
Q Consensus 66 ~~~~~~ILDlGCG~G-~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~~~~~sfD 137 (772)
.+|+++||-.|||.. .++..+++. |...|+++|.++.-++.+++.-. -.++..+-.+.. ....+.+|
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa-----~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-----TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-----SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC-----cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 378999999999843 344555554 88889999999988877754321 112211101100 01235699
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+|++.-.- ...++....++++||.++++.
T Consensus 101 ~vid~~G~-------------~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 101 YSFECIGN-------------VKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EEEECSCC-------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred EeeecCCC-------------HHHHHHHHHhhcCCceeEEEE
Confidence 99874321 357788899999998877654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=82.53 E-value=3.8 Score=34.64 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=62.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHH--HHHHhhcccCccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI--KFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~--~~l~~~~~~~~~~~~~~~~ 621 (772)
++++|+|. |.+...+.+.+....|.+||.||...+.++.. | +.++.||+. +.+++..
T Consensus 1 kHivI~G~--g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-~------~~~i~Gd~~~~~~L~~a~------------ 59 (129)
T d2fy8a1 1 RHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLRS-G------ANFVHGDPTRVSDLEKAN------------ 59 (129)
T ss_dssp CCEEEESC--CHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-T------CEEEESCTTSHHHHHHTT------------
T ss_pred CEEEEECC--CHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-C------ccccccccCCHHHHHHhh------------
Confidence 36788876 55556666666666899999999999887543 3 588999984 4555533
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
-.+.+.+++..++. -..-++-...+.|.|..-+++.+.
T Consensus 60 -------------------i~~A~~vi~~~~~d-------------~~n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 60 -------------------VRGARAVIVNLESD-------------SETIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp -------------------CTTCSEEEECCSSH-------------HHHHHHHHHHHHHCSSSCEEEECS
T ss_pred -------------------hhcCcEEEEeccch-------------hhhHHHHHHHHHHCCCceEEEEEc
Confidence 24578888844322 113334444566888877776553
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=82.46 E-value=8 Score=37.39 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=78.0
Q ss_pred HHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCC
Q 004133 557 PMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNG 635 (772)
Q Consensus 557 ~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (772)
|.+.++.+ +.-++..+|+-|.-.+.-++.|.- +.+++|+..||.+.+...--
T Consensus 94 P~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~--~~~~~v~~~DG~~~l~allP------------------------- 146 (271)
T d2oo3a1 94 PYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLP------------------------- 146 (271)
T ss_dssp HHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCS-------------------------
T ss_pred HHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc--CCCceEEcCchHHHHHhhCC-------------------------
Confidence 33344433 456999999999999999999864 78999999999999988640
Q ss_pred CCCCCCCceeEEEEeC-CCCCCCCCCCcCCcCCCcHHHHHHHHHcc--CCCcEEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 636 NCTASNARVDILIIDV-DSPDSSSGMTCPAADFVEGSFLLTVKDAL--SEQGLFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 636 ~~~~~~~~yD~IivD~-~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L--~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
...+=-+|++|- +.. ..+| ....+.+.+.+ -+.|+++++-.--+....+.++++|+..=..
T Consensus 147 ----P~~rRgLVLIDPpYE~---------k~ey--~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k 210 (271)
T d2oo3a1 147 ----PPEKRGLIFIDPSYER---------KEEY--KEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSK 210 (271)
T ss_dssp ----CTTSCEEEEECCCCCS---------TTHH--HHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSS
T ss_pred ----CCCCceEEEecCCcCC---------HHHH--HHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCcc
Confidence 123345899952 111 1112 23344444444 3689999998877777778888888776554
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=82.15 E-value=8 Score=32.35 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004133 566 FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 645 (772)
Q Consensus 566 ~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 645 (772)
+.+|-+||=||.+.+.-+.++.- .+-++. ...+|.+.+.... ..+||
T Consensus 3 ~~~ILiVDDd~~~~~~l~~~L~~-~g~~v~-~a~~~~~al~~~~-------------------------------~~~~d 49 (123)
T d1dbwa_ 3 DYTVHIVDDEEPVRKSLAFMLTM-NGFAVK-MHQSAEAFLAFAP-------------------------------DVRNG 49 (123)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHH-TTCEEE-EESCHHHHHHHGG-------------------------------GCCSE
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHh-------------------------------hcCCc
Confidence 45899999999999999888732 112343 4568888887765 25699
Q ss_pred EEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 646 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 646 ~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
+||+|+.=++-. ..++++.+++. .|+--++
T Consensus 50 lvi~D~~mp~~~-----------G~e~~~~lr~~-~~~~~iI 79 (123)
T d1dbwa_ 50 VLVTDLRMPDMS-----------GVELLRNLGDL-KINIPSI 79 (123)
T ss_dssp EEEEECCSTTSC-----------HHHHHHHHHHT-TCCCCEE
T ss_pred EEEEeccCcccc-----------chHHHHHHHhc-CCCCeEE
Confidence 999999766432 37899999875 4443333
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=81.66 E-value=0.68 Score=44.13 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=42.2
Q ss_pred EEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC-CC--CCCCCCCcCCcCCC--c
Q 004133 595 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD-SP--DSSSGMTCPAADFV--E 669 (772)
Q Consensus 595 ~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~-~~--d~~~g~s~Pp~~f~--~ 669 (772)
+++.||.+++|+.+. +..+|+|+.|-- .. +...... ...+++ .
T Consensus 6 ~i~~gDcle~l~~lp-------------------------------d~sVdliitdPPY~~~~~~~d~~~-~~~~y~~~~ 53 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVE-------------------------------NKSVQLAVIDPPYNLSKADWDSFD-SHNEFLAFT 53 (256)
T ss_dssp SEEECCHHHHHHHSC-------------------------------TTCEEEEEECCCCSSCSSGGGCCS-SHHHHHHHH
T ss_pred EEEeccHHHHHhhCc-------------------------------CCCcCEEEECCCCCCCcCcCcCCC-CHHHHHHHH
Confidence 699999999999986 467999999641 10 0000000 001111 2
Q ss_pred HHHHHHHHHccCCCcEEEEEec
Q 004133 670 GSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 670 ~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.++++.+++.|+|+|.++++..
T Consensus 54 ~~~~~e~~rvLk~~g~~~~~~~ 75 (256)
T d1g60a_ 54 YRWIDKVLDKLDKDGSLYIFNT 75 (256)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHhhhccccCcccccccC
Confidence 3578889999999998887653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.56 E-value=0.68 Score=44.77 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=43.9
Q ss_pred EEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC--cHHH
Q 004133 595 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSF 672 (772)
Q Consensus 595 ~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~--~~~f 672 (772)
.++++|.++.|+.+. +..+|+|+.|--=.-...... -...++ ...+
T Consensus 6 ~~~~~D~le~l~~l~-------------------------------d~SIDliitDPPYn~~~~~~~-~~~~y~~~~~~~ 53 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLP-------------------------------DDSVQLIICDPPYNIMLADWD-DHMDYIGWAKRW 53 (279)
T ss_dssp EEEECCHHHHHHTSC-------------------------------TTCEEEEEECCCSBCCGGGGG-TCSSHHHHHHHH
T ss_pred eEEechHHHHHhhCc-------------------------------CCCccEEEECCCCCCCccccc-CHHHHHHHHHHH
Confidence 577899999999986 477999999651100000000 011221 3667
Q ss_pred HHHHHHccCCCcEEEEEecC
Q 004133 673 LLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~ 692 (772)
+..+.+.|+|+|.+++|...
T Consensus 54 ~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 54 LAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp HHHHHHHEEEEEEEEEEECS
T ss_pred HHHHHHHhCCCccEEEecCc
Confidence 88899999999999998753
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=81.54 E-value=3 Score=35.09 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=55.7
Q ss_pred CcEEEEEcCHHHHHHHHHhcCCCCCCCeEE-EEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCcee
Q 004133 567 VGIEAVELDLTMLNLAEDYFGFTQDKSLKV-HITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVD 645 (772)
Q Consensus 567 ~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v-~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 645 (772)
.+|-+||=|+.+.+..++++.- ...+| ...||.+.++.... ...||
T Consensus 3 ~rILvVdDd~~~~~~l~~~L~~---~g~~v~~~~~~~~al~~l~~------------------------------~~~~d 49 (118)
T d2b4aa1 3 FRVTLVEDEPSHATLIQYHLNQ---LGAEVTVHPSGSAFFQHRSQ------------------------------LSTCD 49 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH---TTCEEEEESSHHHHHHTGGG------------------------------GGSCS
T ss_pred CEEEEEECCHHHHHHHHHHHHh---cCCCeEEECCHHHHHHHHHh------------------------------cCCCC
Confidence 4899999999999999999832 22344 35688888776541 24699
Q ss_pred EEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 646 ILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 646 ~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
+||+|+.=++.. ..++++.+++.-..-.++++
T Consensus 50 liilD~~lp~~~-----------G~el~~~ir~~~~~~pii~l 81 (118)
T d2b4aa1 50 LLIVSDQLVDLS-----------IFSLLDIVKEQTKQPSVLIL 81 (118)
T ss_dssp EEEEETTCTTSC-----------HHHHHHHHTTSSSCCEEEEE
T ss_pred EEEEeCCCCCCC-----------HHHHHHHHHhcCCCCcEEEE
Confidence 999999766533 37888888876544456665
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=81.29 E-value=2.9 Score=36.03 Aligned_cols=77 Identities=10% Similarity=0.193 Sum_probs=55.6
Q ss_pred CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEE--EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCce
Q 004133 567 VGIEAVELDLTMLNLAEDYFGFTQDKSLKVH--ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARV 644 (772)
Q Consensus 567 ~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~--i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 644 (772)
.+|-+||=+|.+.+.-+..+.. .+...++ ..||.+.++... ...|
T Consensus 3 i~VLiVDD~~~~r~~l~~~L~~--~~~~~~v~~a~~~~~al~~~~-------------------------------~~~~ 49 (138)
T d1a04a2 3 ATILLIDDHPMLRTGVKQLISM--APDITVVGEASNGEQGIELAE-------------------------------SLDP 49 (138)
T ss_dssp EEEEEECSCHHHHHHHHHHHTT--CTTEEEEEEESSHHHHHHHHH-------------------------------HHCC
T ss_pred CEEEEECCCHHHHHHHHHHHHh--CCCcEEEEEECCHHHHHHHHH-------------------------------hcCC
Confidence 3789999999999999998864 2334433 678999887765 2569
Q ss_pred eEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCc-EEEE
Q 004133 645 DILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIV 688 (772)
Q Consensus 645 D~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~G-ilv~ 688 (772)
|+|++|+.-++.. .-++++.+++.- |.. ++++
T Consensus 50 DlvllD~~mP~~~-----------G~el~~~ir~~~-~~~~vivl 82 (138)
T d1a04a2 50 DLILLDLNMPGMN-----------GLETLDKLREKS-LSGRIVVF 82 (138)
T ss_dssp SEEEEETTSTTSC-----------HHHHHHHHHHSC-CCSEEEEE
T ss_pred CEEEEecCCCCCC-----------HHHHHHHHHhhC-CCCCEEEE
Confidence 9999999766432 378899998754 444 4444
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=81.07 E-value=0.48 Score=43.05 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=57.9
Q ss_pred CCCCeEEEEcC-CC-chhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc--cccCCCccEEEe
Q 004133 67 SPPPQILVPGC-GN-SRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--VFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGC-G~-G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~--~~~~~sfDvVi~ 141 (772)
.|+++||-.|. |. |.++..+++. |. +|++++-++.-.+.+++.- ... +.|..+.. .-....+|+|++
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lG----a~~---~i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALG----AEE---AATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTT----CSE---EEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccc----cce---eeehhhhhhhhhcccccccccc
Confidence 68999999984 44 5777777776 76 6999999987777665421 111 12332211 012356999987
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
... ..++...+.|+|||+++.+-
T Consensus 98 ~~G---------------~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 98 VRG---------------KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp CSC---------------TTHHHHHTTEEEEEEEEEC-
T ss_pred ccc---------------hhHHHHHHHHhcCCcEEEEe
Confidence 321 12356778999999998764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.81 E-value=2.4 Score=40.84 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCc---hhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc----------cccCC
Q 004133 68 PPPQILVPGCGNS---RLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ----------VFMDE 134 (772)
Q Consensus 68 ~~~~ILDlGCG~G---~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~----------~~~~~ 134 (772)
.+.++|-.|+..| ..+..|++.|+ +|+.+|.++.-++.+.+........+.++.+|+.+.. ...++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 5779999999877 45677788898 6999999999988887777666778899999998854 01235
Q ss_pred CccEEEeccccc
Q 004133 135 TFDVILDKGGLD 146 (772)
Q Consensus 135 sfDvVi~~~~l~ 146 (772)
..|+++.+....
T Consensus 84 ~idilinnag~~ 95 (258)
T d1ae1a_ 84 KLNILVNNAGVV 95 (258)
T ss_dssp CCCEEEECCCCC
T ss_pred CcEEEecccccc
Confidence 788888655444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=80.05 E-value=0.42 Score=42.58 Aligned_cols=31 Identities=19% Similarity=0.063 Sum_probs=23.5
Q ss_pred eEEEEccc--ccHHHHHHHHhCCCCcEEEEEcCHH
Q 004133 545 KAVVIGLG--AGLLPMFLHECMPFVGIEAVELDLT 577 (772)
Q Consensus 545 ~vLviGlG--~G~l~~~L~~~~p~~~i~~VEiDp~ 577 (772)
||+|||+| |+.++..|.+.. ..|+.++.++.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHH
Confidence 79999999 446666776653 48999988775
|