Citrus Sinensis ID: 004149
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | 2.2.26 [Sep-21-2011] | |||||||
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.859 | 0.905 | 0.333 | 3e-99 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.859 | 0.905 | 0.326 | 3e-97 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.853 | 0.898 | 0.323 | 2e-94 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.859 | 0.905 | 0.314 | 2e-93 | |
| P80227 | 730 | Acylamino-acid-releasing | yes | no | 0.853 | 0.901 | 0.324 | 5e-92 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.289 | 0.339 | 0.320 | 5e-31 | |
| P34422 | 740 | Dipeptidyl peptidase fami | no | no | 0.287 | 0.3 | 0.293 | 5e-23 | |
| Q95WU5 | 761 | Dipeptidyl-peptidase 4 OS | N/A | no | 0.304 | 0.308 | 0.237 | 7e-14 | |
| Q9YBQ2 | 582 | Acylamino-acid-releasing | no | no | 0.256 | 0.340 | 0.264 | 2e-13 | |
| Q5BA58 | 722 | Probable dipeptidyl-pepti | yes | no | 0.290 | 0.310 | 0.236 | 7e-13 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 363 bits (932), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 242/725 (33%), Positives = 369/725 (50%), Gaps = 62/725 (8%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 119
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLDRMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 120 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GAVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 176 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 226
P +F S + K + KG Q + EDWGET K P L V++I
Sbjct: 171 PKAESFFQTKALDVSASDEEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDIE 230
Query: 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346
+S K E S E L V + PR SPD +V+L S H
Sbjct: 287 LSGGKCELL-------SDESLAVCS----------PRLSPDQCRVVYLQYPSL---APHH 326
Query: 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406
L DW T +SL +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLFLYDWYTK--VTSL--VVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466
S+ S Q + +V+ +G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SVQRSRQDLFAVDTQTGSVTSLTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLP 439
Query: 467 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 524
+ + SW+++ + PI ++ ++ P + A FEAI
Sbjct: 440 PAGKEQSVSWVSLEEAEPIPDIHWGIR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584
+ S+ D S P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNSPDKSQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 585 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 644
+ SLPG VG QDV DV A+ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704
ARNP+ N+ M+GTTDIPDWC VE+ D P + L KSPI +I +VK
Sbjct: 608 IARNPVINIVSMMGTTDIPDWCMVETGFPYSNDYL---PDLNVLEEMLDKSPIKYIPQVK 664
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
TP + +LG +D RVP GL+Y AL+ + V +++++P H + + + +SF+N L
Sbjct: 665 TPVLLMLGQEDRRVPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVL 724
Query: 765 WFKKY 769
W +
Sbjct: 725 WLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1 |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 237/725 (32%), Positives = 370/725 (51%), Gaps = 62/725 (8%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 119
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 120 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 176 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 226
P +F S + K + KG Q + EDWGET K P L V++I+
Sbjct: 171 PKAESFFQTKALDISASDDEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDID 230
Query: 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346
+S K E L++ + PR SPD +V+L H
Sbjct: 287 LSGGKCEL-----------------LSDGSLAICSPRLSPDQCRIVYLQYPCL---APHH 326
Query: 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406
L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVT----SVVVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466
S S Q + +V+ +G + +T A S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQTGSITSLTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLP 439
Query: 467 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 524
+ + SW+++ + PI V+ ++ P + A FEAI
Sbjct: 440 PPGKEQSVSWVSLEEAEPIPGIHWGVR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584
+ S+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 585 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 644
+ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704
ARNP+ N+A M+G+TDIPDWC VE+ G +S P + KSPI +I +VK
Sbjct: 608 IARNPVINIASMMGSTDIPDWCMVET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVK 664
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
TP + +LG +D RVP G++Y RAL+ + V +++++P H + +++ +SF+N L
Sbjct: 665 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVL 724
Query: 765 WFKKY 769
W +
Sbjct: 725 WLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 234/724 (32%), Positives = 363/724 (50%), Gaps = 66/724 (9%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 119
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 120 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175
E E+W +++ K F++ HG VY D F +SW+ ET + YVA++
Sbjct: 111 GTGTAEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVADKKR 170
Query: 176 PSKPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVIN 224
P +F TK GS D+ + K +GD + EDWGE K P L V++
Sbjct: 171 PKAESFF--QTKALDVTGSDDEMARTKKPDQAIKGDQFLFYEDWGENMVSKSTPVLCVLD 228
Query: 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284
I SG + ++G+P+S+S GQ WAP + G+ VFVGW E +LGI++C NR ALY
Sbjct: 229 IESGNISVLEGVPESVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRFCTNRRSALYY 284
Query: 285 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344
V ++ K E S E + V + PR SPD +V+L S V
Sbjct: 285 VDLTGGKCELL-------SDESVAVTS----------PRLSPDQCRIVYLRFPSLV---P 324
Query: 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404
H L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 325 HQQCGQLCLYDWYTRVT----SVVVDIVPR---QLGEDFSGIYCSLLPLGCWSADSQRVV 377
Query: 405 LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464
S S Q + +V+ G + +T S SW LLT+D D ++ S+P P +K G+
Sbjct: 378 FDSPQRSRQDLFAVDTQMGSVTSLTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGF 437
Query: 465 FVDKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFE 522
+ SW+++ + P ++ L Q + A FE
Sbjct: 438 LPPAGKEQAVSWVSLEEAEPFPDISWSIRVLQPPPQ------------QEHVQYAGLDFE 485
Query: 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 582
AI + S+ + + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+
Sbjct: 486 AILLQPSNSPEKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQ 545
Query: 583 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 642
+++ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ +
Sbjct: 546 DSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYS 605
Query: 643 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 702
A RNP+ N+A M+G+TDIPDWC VE+ S D P + KSPI + +
Sbjct: 606 ACVVRNPVINIASMMGSTDIPDWCMVEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQ 662
Query: 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 762
VKTP + +LG +D RVP G++Y R L+ + V +++++P H + + + +SF+N
Sbjct: 663 VKTPLLLMLGQEDRRVPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNA 722
Query: 763 GLWF 766
LW
Sbjct: 723 VLWL 726
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 228/725 (31%), Positives = 362/725 (49%), Gaps = 62/725 (8%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 121 NESPIQ----FELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175
P + E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTGPGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 176 PSKPTF-SLGSTKGGSSDKDCNSWKG-----QGD---WEEDWGETYAGKRQPSLFVININ 226
P +F + +SD + K +GD + EDWGE K P L V+++
Sbjct: 171 PKAESFFQTKALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLCVLDVE 230
Query: 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI++C NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDAGV----VFVGWWHEPFRLGIRFCTNRRSALYYVD 286
Query: 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346
+ K E L++ + PR SPD +V+L S + H
Sbjct: 287 LIGGKCEL-----------------LSDDSLAVSSPRLSPDQCRIVYLQYPSLI---PHH 326
Query: 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVTSVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 465
S S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQVGTVTSLTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLP 439
Query: 466 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 524
K W L + PI ++ +++ P + + A FEAI
Sbjct: 440 SAGKEQSVLWVSLEEAEPIPDIHWGIR---------VLQPPPEQENVQY---AGLDFEAI 487
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584
+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPGSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 585 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 644
+ SLPG VG QDV DV A++ V+ + S V ++GGSHGGF++ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRAC 607
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704
ARNP+ N+A M+G+TDIPDWC VE+ D P + KSPI +I +VK
Sbjct: 608 VARNPVINIASMLGSTDIPDWCVVEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVK 664
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
TP + +LG +D RVP G++Y RAL+ + V +++++P H + + + +SF+N L
Sbjct: 665 TPLLLMLGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVL 724
Query: 765 WFKKY 769
W + +
Sbjct: 725 WLRTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 234/722 (32%), Positives = 364/722 (50%), Gaps = 64/722 (8%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 119
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 120 -ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+ P
Sbjct: 111 STGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKRPK 170
Query: 178 KPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVININ 226
+F TK GS D+ K +GD + EDWGE K P L V++I
Sbjct: 171 AESFF--QTKALDISGSDDEMARPKKPDQAIKGDQFLFYEDWGENMVSKGSPVLCVLDIE 228
Query: 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286
SG + ++G+P+S+S GQ WAP + G+ VF GW E +LGI++C NR ALY V
Sbjct: 229 SGNISVLEGVPESVSPGQAFWAPGDTGV----VFAGWWHEPFRLGIRFCTNRRSALYYVD 284
Query: 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346
++ EL S + L V + PR SPD +V+L S V H
Sbjct: 285 LT-----GGNCELL--SDDSLAVTS----------PRLSPDQCRIVYLQFPSLV---PHQ 324
Query: 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 325 QCGQLCLYDWYTRVTVVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 377
Query: 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 465
+ S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 378 TAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLTIDRDLMVAQFSTPNLPPCLKVGFLP 437
Query: 466 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 524
+ W L + PI ++ +++ P + A FEAI
Sbjct: 438 PAGMEQEVVWVSLEEAEPIPDISWSIR---------VLQPPPEQEHAQYVG---LDFEAI 485
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584
+ S+ D + P++V+ HGGPHS ++S+ A L +G++ L+VNYRGS GFG+++
Sbjct: 486 LIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAMLCKMGFAALLVNYRGSTGFGQDS 545
Query: 585 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 644
+ SLPG VGSQDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 546 ILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGAC 605
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704
RNP+ N+A M+G+TDIPDWC VE+ D + P+V + +KSPI + +VK
Sbjct: 606 VVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD-PNV--WSEMLNKSPIKYTPQVK 662
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
TP + +LG +D RVP G++Y RAL+ + V +++++P H + + + +SF+N +
Sbjct: 663 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSTHSLSEVEVESDSFMNAVI 722
Query: 765 WF 766
W
Sbjct: 723 WM 724
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
PLI+ +HGGPH + +Y L++ GY+++ +N RGS G+G+E + ++ G G +D
Sbjct: 431 PLILNIHGGPHMMYGHTYFHEFQVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDY 490
Query: 598 NDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+DV+ A+D I +P ++ V GGS+GGF+T ++GQ ++F AA + + N
Sbjct: 491 DDVMQAVDEAIKRDPHIDPKRLGVTGGSYGGFMTNWIVGQT-NRFKAAVTQRSISNWISF 549
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
G +DI G D E ED + +SP+ + + V+TP + L G +D
Sbjct: 550 HGVSDI---------GYFFTDWQLEHDMFEDTEKLWDRSPLKYAANVETPLLILHGERDD 600
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---PQSDFESFLNIGLWFKKYC 770
R P+ Q AL++ G ETK++ FPN H + R P+ + I WF ++
Sbjct: 601 RCPIEQAEQLFIALKKMGKETKLVRFPNASHNLSRTGHPRQRIKRLNYISSWFDQHL 657
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598
+IV++HGGP + +S A+L++ GYS+L VN+RGS GFG+ + G+ G +
Sbjct: 431 MIVLVHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHF 490
Query: 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658
D+L A++ + G+AN S+V V+GGS+GG+ T + P F NL +V
Sbjct: 491 DILDAVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQ 550
Query: 659 TTDIPDWC-----YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
P W ++ G+ D E S+SP+ +V P + + GA
Sbjct: 551 AIP-PYWLGFRKDLIKMVGADISDE-------EGRQSLQSRSPLFFADRVTKPIMIIQGA 602
Query: 714 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
D RV + Q+ AL +K + +++P++ HG+ +PQ+ E +I + ++
Sbjct: 603 NDPRVKQAESDQFVAALEKKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ 657
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q95WU5|DPP_GIAIN Dipeptidyl-peptidase 4 OS=Giardia intestinalis GN=DPP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 18/253 (7%)
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHS--VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 582
+ + ++ +D PLI+ +HGGP S + SY + +++ GY +L N+ GS FGE
Sbjct: 518 YFAPANLRDSHEYPLILYVHGGPESPWANSWSYRWNPQLIAARGYGVLATNFHGSSSFGE 577
Query: 583 EALQSLPGKVGSQDVNDVLTAIDHVI---DMGLANPSKVTVVGGSHGGFLTTHL---IGQ 636
+S+ G S + D++ A ++ D + KV +G S G ++ +
Sbjct: 578 VFQKSVRGNWYSYPLEDIMDAWSNIYTHADKAYLSREKVCAMGASFGATFMNYMNSHVNN 637
Query: 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696
+ +CN AL P V G F V++ + +P
Sbjct: 638 VTCYVTHDGVFDTMCN-ALETDELFFP----VRELGG-----FLLDEQVDNQQLYEKWNP 687
Query: 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756
+ + P + + G +D R+ V +G+ +ALR +G++TK++ FP H + +PQ
Sbjct: 688 ARFVENMSAPMLVIHGQKDYRIQVYHGISLFQALRLRGIKTKLVYFPTQSHWVWQPQESL 747
Query: 757 ESFLNIGLWFKKY 769
+ W Y
Sbjct: 748 FWHTQVFDWLDTY 760
|
May be involved in metabolism of dipeptides or may affect host defense mechanisms. Giardia intestinalis (taxid: 5741) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1547.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 14/212 (6%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 749
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q5BA58|DPP5_EMENI Probable dipeptidyl-peptidase 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dpp5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 13/237 (5%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSL--AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
PL ++HGGP +S+S + GY ++ N GS G+G+E ++ G
Sbjct: 469 PLAFLIHGGPQGAWYNSWSSRWNPKVFADQGYVVVAPNPTGSTGYGDELTDAIQNNWGGA 528
Query: 596 DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNL 653
D++ A ++V D + + + G S+GGF+ + G + F A +
Sbjct: 529 PYEDLVKAWEYVRDNLDYVDTDRGVAAGASYGGFMVNWIQGSDLGREFKALVTHDGTFVA 588
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
+ T ++ W + D V D R S I + TP + +
Sbjct: 589 DAKISTEEL--WFMEREFNGTFWD-------VRDNYRRFDPSAPERILRFATPHLIIHND 639
Query: 714 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770
D R+PV+ GL L+E+GV ++ + FP++ H + P++ + W KY
Sbjct: 640 LDYRLPVAEGLSLFNVLQERGVPSRFLNFPDENHWVTSPENSLVWHQQVLGWLNKYS 696
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | ||||||
| 359477374 | 822 | PREDICTED: acylamino-acid-releasing enzy | 0.998 | 0.936 | 0.754 | 0.0 | |
| 356536605 | 766 | PREDICTED: acylamino-acid-releasing enzy | 0.975 | 0.981 | 0.734 | 0.0 | |
| 255551973 | 771 | acylamino-acid-releasing enzyme, putativ | 0.996 | 0.996 | 0.739 | 0.0 | |
| 356534785 | 758 | PREDICTED: acylamino-acid-releasing enzy | 0.979 | 0.996 | 0.696 | 0.0 | |
| 357487227 | 832 | Acylamino-acid-releasing enzyme [Medicag | 0.976 | 0.905 | 0.727 | 0.0 | |
| 357487225 | 768 | Acylamino-acid-releasing enzyme [Medicag | 0.976 | 0.980 | 0.727 | 0.0 | |
| 357487229 | 810 | Acylamino-acid-releasing enzyme [Medicag | 0.976 | 0.929 | 0.641 | 0.0 | |
| 297804842 | 763 | hypothetical protein ARALYDRAFT_915409 [ | 0.983 | 0.993 | 0.660 | 0.0 | |
| 42566792 | 764 | acylaminoacyl-peptidase [Arabidopsis tha | 0.984 | 0.993 | 0.655 | 0.0 | |
| 78708638 | 839 | prolyl oligopeptidase family protein, ex | 0.984 | 0.904 | 0.623 | 0.0 |
| >gi|359477374|ref|XP_002284013.2| PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera] gi|297737147|emb|CBI26348.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/774 (75%), Positives = 664/774 (85%), Gaps = 4/774 (0%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTF-NSGNGNGTQAMFS 59
M + ++ K+V +D EE YAS SKLL++FT+I+SIDKAWTF G G+QAMFS
Sbjct: 50 MASCGSSSMKEVPLGIDPAMEETYASQSKLLKEFTSIASIDKAWTFKRDSGGKGSQAMFS 109
Query: 60 ISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP 119
ISQ NLLANKR+K +LS ISKE+++SV FQWAPFP+EM G S +VPSPSGSKLLVVRNP
Sbjct: 110 ISQTNLLANKRRKQILSAHISKESDHSVNFQWAPFPIEMMGVSTMVPSPSGSKLLVVRNP 169
Query: 120 ENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179
ENESP QFE+W SQLEKEF+VPQ+VHGSVY DGWFEGISWNSDETLIAYVAEEPSPSKP
Sbjct: 170 ENESPTQFEIWGPSQLEKEFNVPQSVHGSVYTDGWFEGISWNSDETLIAYVAEEPSPSKP 229
Query: 180 TFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
TF G KG S+DK+ SWKG G+WEE WGETYAGKRQP+LFVINI SGEV AV+GI K
Sbjct: 230 TFGGSGYKKGDSADKESGSWKGLGEWEEHWGETYAGKRQPALFVINIESGEVHAVEGISK 289
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298
SLS+GQV+WAPL EG QYLVFVGWSSETRKLGIKYCYNRPCALYAVR +S+A+EL+
Sbjct: 290 SLSIGQVIWAPLAEGFSQYLVFVGWSSETRKLGIKYCYNRPCALYAVRAPFCESKANELQ 349
Query: 299 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
K + +ED VVNLT+SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI WPT
Sbjct: 350 SKSNVNEDSTVVNLTQSISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIAWPT 409
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418
+G IVDVIPV+ CAE FPGLY SSILSNPWLSDGCTM+LSS W S+QVI+SV
Sbjct: 410 DGKPCPSANIVDVIPVMMCAEDGYFPGLYCSSILSNPWLSDGCTMILSSAWHSTQVILSV 469
Query: 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG-TWSWL 477
+V SG + ++P +S FSW++LTLDGDNI+AV SSP+D+P++KYG+ +K +WSWL
Sbjct: 470 DVLSGNVSHVSPNDSGFSWNVLTLDGDNIVAVCSSPIDIPEMKYGWLAEKTTASDSWSWL 529
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 537
+VS+PI RC EK++SLLSS QFSIMKIPVK VS LTKG+ KPFEAIFVSS+ K D +CD
Sbjct: 530 DVSNPIPRCSEKIRSLLSSLQFSIMKIPVKDVSDCLTKGSCKPFEAIFVSSNKKND-TCD 588
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
PLIVVLHGGPHSVS SS+SK+LAFLSS+GYSLLIVNYRGSLGFGEEALQSLPGK+GSQDV
Sbjct: 589 PLIVVLHGGPHSVSSSSFSKNLAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGKIGSQDV 648
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
NDVLTAIDHVIDMGL +PSK+ VVGGSHGGFLT+HLIGQAPDKF AA RNP+CNLALMV
Sbjct: 649 NDVLTAIDHVIDMGLCDPSKIAVVGGSHGGFLTSHLIGQAPDKFAVAAVRNPVCNLALMV 708
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
GTTDIPDWC+VE+YGS+GK+SFTE+PS E LT HSKSP+SHI KVKTPT+FLLGAQDLR
Sbjct: 709 GTTDIPDWCFVEAYGSQGKNSFTEAPSAEQLTLLHSKSPVSHIHKVKTPTLFLLGAQDLR 768
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
VPVSNGL YAR L+EKGVE KVI+FPNDVH IERPQSDFESFLNIG+WFKKYC+
Sbjct: 769 VPVSNGLHYARELKEKGVEVKVIIFPNDVHAIERPQSDFESFLNIGVWFKKYCE 822
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536605|ref|XP_003536827.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/762 (73%), Positives = 658/762 (86%), Gaps = 10/762 (1%)
Query: 18 ATAEEEYASLSKLLQDFTNISSIDKAWTFNS----GNGNGTQAMFSISQPNLLANKRKKF 73
A AE+EYA S LLQ+FT IS+IDKAW F S + + + AMF +SQPNLL NKRKK
Sbjct: 7 AAAEQEYALHSTLLQEFTAISAIDKAWLFKSHTHTASASSSHAMFCVSQPNLLVNKRKKS 66
Query: 74 MLS-TVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 132
++S T++++ + +SVTFQWAPFP++++G SA+VPSPSGSKLL+VRNPE++ P +FE+WS
Sbjct: 67 IVSATILTQNDASSVTFQWAPFPIQVSGVSAMVPSPSGSKLLIVRNPESDGPCRFEIWSS 126
Query: 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--GSTKGGS 190
SQL+KEFH+P + HGSVY DGWFEGISWNSDET IAYVAEEP+P+KPTF+ G K GS
Sbjct: 127 SQLQKEFHIPPSKHGSVYTDGWFEGISWNSDETCIAYVAEEPAPTKPTFNDLGGYKKAGS 186
Query: 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250
S+KDC +WKGQG+WEEDWGETYAGKRQP+ FVININSGEVQAVKGI KSLSVGQVVWAP
Sbjct: 187 SEKDCGTWKGQGEWEEDWGETYAGKRQPAPFVININSGEVQAVKGIDKSLSVGQVVWAPS 246
Query: 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 310
EG Q+LVFVGW+ ETRKLGIKYCYNRPCALY V+ ++S+A+E E+ S+ED+ V
Sbjct: 247 TEGSAQHLVFVGWTFETRKLGIKYCYNRPCALYVVKAPHHESKANETEIH--STEDVQAV 304
Query: 311 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370
NLT++ISSAFFPRFSPDGKFLVF+SA+SSVDSG HSATDSLHRIDWP + KI +
Sbjct: 305 NLTQTISSAFFPRFSPDGKFLVFVSARSSVDSGVHSATDSLHRIDWPEDSKLYKSAKIHE 364
Query: 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430
VIPVV AE FPGLY S+ILS+PWLSDG T++++SIW SSQV++S+NV SGELLRITP
Sbjct: 365 VIPVVLFAEDGGFPGLYCSTILSDPWLSDGYTLVIASIWHSSQVLLSINVLSGELLRITP 424
Query: 431 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA-NKGTWSWLNVSSPISRCPEK 489
A+SNFSWSLL LDG+NI+AVSSSPVDVPQ+KYG V KA N WSW +V++PI +C +K
Sbjct: 425 ADSNFSWSLLALDGNNILAVSSSPVDVPQIKYGAIVKKAANNKEWSWSDVANPIFKCSDK 484
Query: 490 VKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS 549
V+SL+SS FSIMKI VK +SA+LTKGA +P+EAIFVSS KK + DPLIVVLHGGPH+
Sbjct: 485 VRSLISSLTFSIMKISVKDISASLTKGASQPYEAIFVSSKTKKSDALDPLIVVLHGGPHT 544
Query: 550 VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609
VSLSS+SK LA+LSS+GYSLLIVNYRGSLGFGEEALQSLPGK GSQDVNDVLTAIDHVI+
Sbjct: 545 VSLSSFSKPLAYLSSLGYSLLIVNYRGSLGFGEEALQSLPGKAGSQDVNDVLTAIDHVIN 604
Query: 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669
+GLA+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNLALMVGTTDIPDWCYVE
Sbjct: 605 LGLASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLALMVGTTDIPDWCYVE 664
Query: 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729
+YG+KG+D FTE+PS EDLT F+SKSPI+H+SKVKTPTIFLLGAQDLRVP+S GLQYARA
Sbjct: 665 TYGTKGRDKFTEAPSAEDLTLFYSKSPIAHLSKVKTPTIFLLGAQDLRVPISTGLQYARA 724
Query: 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
LREKG + KVIVFPNDVHGIERPQSDFES+LNI +WF KYCK
Sbjct: 725 LREKGGQVKVIVFPNDVHGIERPQSDFESYLNIAMWFNKYCK 766
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551973|ref|XP_002517031.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223543666|gb|EEF45194.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1153 bits (2983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/774 (73%), Positives = 655/774 (84%), Gaps = 6/774 (0%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 60
MDASKA +++ +DA+ EEEYAS SKLLQ+FT+IS IDKAWTFNS +QA+FSI
Sbjct: 1 MDASKAVSSRESPLGIDASTEEEYASQSKLLQEFTSISRIDKAWTFNSNTDMCSQAIFSI 60
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
SQ NLL NKR+KFMLS ISK+ SV FQWAPFP+EMTG S +VPSPSGSKLLV+RNPE
Sbjct: 61 SQANLLVNKRRKFMLSASISKQVSGSVNFQWAPFPIEMTGVSTMVPSPSGSKLLVIRNPE 120
Query: 121 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180
NESP FE+WSQ Q+EKEFHVPQ+VHGSVY DGWFEGISWNSDETL+A+VAEEPSP KP
Sbjct: 121 NESPTHFEIWSQGQMEKEFHVPQSVHGSVYTDGWFEGISWNSDETLVAFVAEEPSPPKPV 180
Query: 181 FS-LGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
FS LG G + DKD NSWKGQG+WEE WGETYAGKRQ +LFVI+ +SGEV+ VKGI K
Sbjct: 181 FSGLGYKTGEANKDKDYNSWKGQGEWEEGWGETYAGKRQSALFVISTSSGEVKPVKGIAK 240
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298
SLSVGQVVWAP + +Q LVFVGWS++ RKLGIKYCYNRPCALYAV+ +Y+SE SE E
Sbjct: 241 SLSVGQVVWAPSTKDSYQCLVFVGWSADPRKLGIKYCYNRPCALYAVQAPVYRSE-SEFE 299
Query: 299 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
LK++ E P +NLT+SISSAF P FSP G+ LVFLSAKSSVDSGAH T SLHRIDWP
Sbjct: 300 LKDNPIEGSPALNLTQSISSAFLPLFSPVGRLLVFLSAKSSVDSGAHMGTGSLHRIDWPV 359
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418
NG SSL KIVDV+PVVQCAE CFPGLY S LSNPWLSDGCTM+LSS+W S +V++S+
Sbjct: 360 NG--SSLPKIVDVVPVVQCAEDGCFPGLYCSGFLSNPWLSDGCTMILSSVWHSCEVLLSI 417
Query: 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GTWSWL 477
NV SG++ RI+P +S FSW++L LDGDNIIAVSSSPVD+P ++YG V K + TW+WL
Sbjct: 418 NVLSGDVKRISPIDSKFSWNVLALDGDNIIAVSSSPVDMPGIRYGSLVSKTTENATWNWL 477
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 537
+ SSPI RC E+V+SLLSSR F I+KIPVK VS TK A KPFEAI VSS KK+ + D
Sbjct: 478 DASSPIFRCSEEVRSLLSSRHFDILKIPVKDVSGCPTKSASKPFEAIIVSSYSKKNGASD 537
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
PLIV+LHGGPHSVS SS+SKSLAFLSS+GYSLLIVNYRGS+GFGEEALQSLPGKVGSQDV
Sbjct: 538 PLIVMLHGGPHSVSSSSFSKSLAFLSSLGYSLLIVNYRGSIGFGEEALQSLPGKVGSQDV 597
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
NDVLTAIDHVID G+A+PS + V+GGSHGGFLTTHLIGQ+P KFVAAAARNP+CNLA MV
Sbjct: 598 NDVLTAIDHVIDTGIASPSSIAVLGGSHGGFLTTHLIGQSPHKFVAAAARNPVCNLASMV 657
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
GTTDIPDWCYVE+YG+ GK FTE+PS +DL FHSKSPISHISKVK PTIFL+GAQDLR
Sbjct: 658 GTTDIPDWCYVEAYGTGGKSKFTEAPSADDLALFHSKSPISHISKVKAPTIFLIGAQDLR 717
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
VP+SNGLQYARAL+EKGVE K+++FP+DVHGIERPQSDFESFLNIG+WFKKYCK
Sbjct: 718 VPMSNGLQYARALKEKGVEVKILLFPDDVHGIERPQSDFESFLNIGVWFKKYCK 771
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534785|ref|XP_003535932.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/759 (69%), Positives = 625/759 (82%), Gaps = 4/759 (0%)
Query: 16 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFML 75
+ E++YA LS LLQDFT I +IDKAW F+S G+ Q MF +SQP+LL NKR+ ++
Sbjct: 1 MHKETEDDYAYLSNLLQDFTIIPNIDKAWLFSSP-GSQLQGMFVVSQPDLLTNKRRTSIM 59
Query: 76 STVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 135
S I K++++SV F WAPFP+EM+G S +VPSPSGSKLLV+RNPENE+P FE+WS S++
Sbjct: 60 SCNILKQSDSSVKFLWAPFPIEMSGVSMIVPSPSGSKLLVIRNPENEAPCCFEIWSSSRM 119
Query: 136 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--GSTKGGSSDK 193
EKEFH+PQ++HGSVY DGWFEG+SWN DET IAYVAEE SP+KPTF+ G KGG +DK
Sbjct: 120 EKEFHIPQSLHGSVYNDGWFEGVSWNLDETCIAYVAEESSPAKPTFNDLGGYKKGGCADK 179
Query: 194 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253
D WKGQGDWEEDWGETYAG+R+P+LFVININS +VQ VKGI KSLS+GQVVWAP EG
Sbjct: 180 DLGYWKGQGDWEEDWGETYAGRRRPALFVININSRDVQEVKGIDKSLSIGQVVWAPFTEG 239
Query: 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 313
QYLVFVGWSS+ RKLGIKYC NRPCALY VRV E+ E S+E+ +NLT
Sbjct: 240 SEQYLVFVGWSSKPRKLGIKYCSNRPCALYTVRVRALHHESKPNEPVVQSTEEFHALNLT 299
Query: 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373
++ISSAFFPRFSPDGKFLVFLSA+S+VDSG H+AT+SLHRIDWPT+G KI D+IP
Sbjct: 300 QTISSAFFPRFSPDGKFLVFLSARSAVDSGVHNATNSLHRIDWPTDGKLFQSSKIYDIIP 359
Query: 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433
VV CAE CFPGLY ++I +NPWLSD CTM++SSIW SS+V++SVNV SGE+L I+PA+S
Sbjct: 360 VVMCAEDGCFPGLYCTTIHNNPWLSDNCTMIISSIWHSSEVLLSVNVLSGEILHISPADS 419
Query: 434 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGT-WSWLNVSSPISRCPEKVKS 492
NFSW+LLTLD +NI+A+SSSPVDVPQ+KYG ++KA T WSW N+SSPI RC +KV S
Sbjct: 420 NFSWNLLTLDRNNIVAISSSPVDVPQIKYGMAIEKATSNTTWSWSNISSPIFRCSDKVVS 479
Query: 493 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 552
LLSS Q SI+ I VK V TKGA K FEAIFV+S K DPLIV+LHGGPH VSL
Sbjct: 480 LLSSLQCSILSISVKDVHDGQTKGATKHFEAIFVTSKTKNKDVFDPLIVILHGGPHDVSL 539
Query: 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612
S +SK LAF SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL+AIDHVI++GL
Sbjct: 540 SHFSKYLAFQSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDHVINLGL 599
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672
A+PSK+TV+G SHGGFLTTHLIGQAPDKFVAAAA NP+CNLALM+GTTDIPDWCYVE+ G
Sbjct: 600 ASPSKITVMGISHGGFLTTHLIGQAPDKFVAAAAINPVCNLALMIGTTDIPDWCYVEACG 659
Query: 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732
+ K+ FTE PS +DLT F SKSPISH+SKVK PT+FLLGAQD+RVP+ +GLQYARAL+E
Sbjct: 660 TIAKNCFTEPPSADDLTLFQSKSPISHVSKVKAPTLFLLGAQDIRVPIFDGLQYARALKE 719
Query: 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
KGVE K+I+F NDVH ++RPQSD E FL+IG+WF KYCK
Sbjct: 720 KGVEVKIIMFQNDVHALKRPQSDLECFLHIGVWFNKYCK 758
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487227|ref|XP_003613901.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515236|gb|AES96859.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/759 (72%), Positives = 642/759 (84%), Gaps = 6/759 (0%)
Query: 16 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAM-FSISQPNLLANKRKKFM 74
+D E++Y+ S LLQ FT+ISSIDK+W FNS + +Q M FS+SQPNLLANK++KF+
Sbjct: 77 IDEETEQQYSLHSNLLQQFTSISSIDKSWIFNSNTDSSSQGMMFSVSQPNLLANKKRKFI 136
Query: 75 LSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 134
LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+VRNPE + +FE+WS S
Sbjct: 137 LSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIVRNPEGDGGCKFEIWSNSC 196
Query: 135 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDK 193
LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP+KPTF+ G GS DK
Sbjct: 197 LENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSPAKPTFNDQGYKVSGSDDK 256
Query: 194 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253
D +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKGI KSLSVGQVVWAP +EG
Sbjct: 257 DSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKGIDKSLSVGQVVWAPSSEG 316
Query: 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 313
QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +E E++ ++ED+ + LT
Sbjct: 317 SAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPNENEIQ--ATEDVQALKLT 373
Query: 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373
++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRIDWP + K+ DVIP
Sbjct: 374 QTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRIDWPKDVKLYQSAKVHDVIP 433
Query: 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433
VV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV++SVNV SG++ RITPA+S
Sbjct: 434 VVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVLLSVNVFSGQIKRITPADS 493
Query: 434 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTWSWLNVSSPISRCPEKVKS 492
NFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W W +VS+PI +C +KV+S
Sbjct: 494 NFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEWRWSDVSNPIYKCSDKVRS 553
Query: 493 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 552
LLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK +CDPLIVVLHGGPHSVSL
Sbjct: 554 LLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSDACDPLIVVLHGGPHSVSL 613
Query: 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612
SS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GSQDVNDVL+AIDHVID+GL
Sbjct: 614 SSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGSQDVNDVLSAIDHVIDLGL 673
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672
A+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL LMVGTTDIPDWC+VESYG
Sbjct: 674 ASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLELMVGTTDIPDWCFVESYG 733
Query: 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732
+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQDLRVP+S GLQYARAL+E
Sbjct: 734 TNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQDLRVPISTGLQYARALKE 793
Query: 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
KGV KVI+FPNDVHGI+RPQSDFESFL+I WF KYCK
Sbjct: 794 KGVPVKVILFPNDVHGIDRPQSDFESFLSIAAWFNKYCK 832
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487225|ref|XP_003613900.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515235|gb|AES96858.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/759 (72%), Positives = 642/759 (84%), Gaps = 6/759 (0%)
Query: 16 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAM-FSISQPNLLANKRKKFM 74
+D E++Y+ S LLQ FT+ISSIDK+W FNS + +Q M FS+SQPNLLANK++KF+
Sbjct: 13 IDEETEQQYSLHSNLLQQFTSISSIDKSWIFNSNTDSSSQGMMFSVSQPNLLANKKRKFI 72
Query: 75 LSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 134
LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+VRNPE + +FE+WS S
Sbjct: 73 LSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIVRNPEGDGGCKFEIWSNSC 132
Query: 135 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDK 193
LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP+KPTF+ G GS DK
Sbjct: 133 LENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSPAKPTFNDQGYKVSGSDDK 192
Query: 194 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253
D +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKGI KSLSVGQVVWAP +EG
Sbjct: 193 DSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKGIDKSLSVGQVVWAPSSEG 252
Query: 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 313
QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +E E++ ++ED+ + LT
Sbjct: 253 SAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPNENEIQ--ATEDVQALKLT 309
Query: 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373
++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRIDWP + K+ DVIP
Sbjct: 310 QTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRIDWPKDVKLYQSAKVHDVIP 369
Query: 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433
VV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV++SVNV SG++ RITPA+S
Sbjct: 370 VVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVLLSVNVFSGQIKRITPADS 429
Query: 434 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTWSWLNVSSPISRCPEKVKS 492
NFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W W +VS+PI +C +KV+S
Sbjct: 430 NFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEWRWSDVSNPIYKCSDKVRS 489
Query: 493 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 552
LLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK +CDPLIVVLHGGPHSVSL
Sbjct: 490 LLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSDACDPLIVVLHGGPHSVSL 549
Query: 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612
SS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GSQDVNDVL+AIDHVID+GL
Sbjct: 550 SSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGSQDVNDVLSAIDHVIDLGL 609
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672
A+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL LMVGTTDIPDWC+VESYG
Sbjct: 610 ASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLELMVGTTDIPDWCFVESYG 669
Query: 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732
+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQDLRVP+S GLQYARAL+E
Sbjct: 670 TNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQDLRVPISTGLQYARALKE 729
Query: 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
KGV KVI+FPNDVHGI+RPQSDFESFL+I WF KYCK
Sbjct: 730 KGVPVKVILFPNDVHGIDRPQSDFESFLSIAAWFNKYCK 768
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487229|ref|XP_003613902.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515237|gb|AES96860.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/806 (64%), Positives = 617/806 (76%), Gaps = 53/806 (6%)
Query: 17 DATAEEE-YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFML 75
DAT E+E YASLS LL FT I +I KAW FNS N TQ MFSI+QP++L NK K +L
Sbjct: 7 DATTEKENYASLSNLLPHFTTIPNIHKAWLFNSHTTN-TQGMFSITQPDVLTNKNKTLIL 65
Query: 76 ST--VISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKLLVVRNPENES--PIQFELW 130
S V K + + V F WAPFP+EM G S +VPSPSGSKLLV+RN ++E FE+W
Sbjct: 66 SCNFVKQKSDGSVVEFLWAPFPIEMRGDVSMIVPSPSGSKLLVIRNSDSEGGGSCCFEIW 125
Query: 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGG 189
S S LEKEF +PQ++HGSVY DGWFEG+SWN DETLIAYVAE PSP+KP F+ G KGG
Sbjct: 126 SSSCLEKEFSIPQSMHGSVYNDGWFEGVSWNLDETLIAYVAEAPSPTKPVFNNTGYKKGG 185
Query: 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 249
++ D WKGQG+WEEDWGETYA KRQP+LFVININSGEVQAVKGI KSLS GQVVWAP
Sbjct: 186 CAENDFGIWKGQGEWEEDWGETYAAKRQPTLFVININSGEVQAVKGIDKSLSAGQVVWAP 245
Query: 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 309
EG QYLVFVGWSS TRKLG+KYC NRPCALYAVR ++S++ E E SS+E+L
Sbjct: 246 FTEGSEQYLVFVGWSSGTRKLGMKYCSNRPCALYAVRAPHHESQSEEPE-HHSSTEELHA 304
Query: 310 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369
+NLT +ISSA FPRFSP+GKFLVFLSAKS+V+SG H+AT+SLHRIDWPT+G I
Sbjct: 305 LNLTPTISSALFPRFSPNGKFLVFLSAKSAVNSGVHNATNSLHRIDWPTDGKLYQSANIY 364
Query: 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429
D+IPVV CAE CFPGLY +++ +NPWLSD CTM+LSSIW S +V++SVNV SG++LRI+
Sbjct: 365 DIIPVVMCAEDGCFPGLYCTTVHNNPWLSDNCTMILSSIWHSCEVLLSVNVLSGKILRIS 424
Query: 430 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN-KGTWSWLNVSSPISRCPE 488
PA+SNFSW+LLTLD DNI+A+SS+PV+VPQ+ YG ++K WSW +SSPI +C +
Sbjct: 425 PADSNFSWNLLTLDEDNILAISSNPVNVPQIMYGMAIEKTKGNSIWSWSKISSPILKCSD 484
Query: 489 KVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH 548
KV+SLLSS Q SI+KIPV S+N TKGA KPFEAIFVSS K DPLIV+LHGGP
Sbjct: 485 KVRSLLSSIQCSILKIPVTDGSSNTTKGAAKPFEAIFVSSKTKNKDVFDPLIVILHGGPQ 544
Query: 549 SVSLSSYSKSLAFLSSVGYSL-------------------------------LIVNY--- 574
VS S +S S AFLSSVGYSL +I+++
Sbjct: 545 DVSSSHFSNSWAFLSSVGYSLDLVGTCILQHQNHSIKACLEKKRKTKNTAPCIIISFKDS 604
Query: 575 ---------RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH 625
RGSLGFGEEALQSLPGKVGSQDVNDVL+AIDHVI++G A+PSK+TV+G SH
Sbjct: 605 YKFTTLLFLRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDHVINLGHASPSKITVMGISH 664
Query: 626 GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 685
GGFLTTHLIGQAP+KFVAAAA NP+CNLA+MVGTTDIPDWCYVE++G+ +D F+E+PS
Sbjct: 665 GGFLTTHLIGQAPEKFVAAAAINPVCNLAMMVGTTDIPDWCYVEAFGTTARDCFSEAPSA 724
Query: 686 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745
EDLT F+SKSPISH+SKVK PT+FLLG QDLRVP +GLQYARAL+EKGV+ K+I+F ND
Sbjct: 725 EDLTLFYSKSPISHVSKVKAPTLFLLGGQDLRVPKFDGLQYARALKEKGVDVKIIMFQND 784
Query: 746 VHGIERPQSDFESFLNIGLWFKKYCK 771
VH ++RPQS++E LNIG+WF KYCK
Sbjct: 785 VHALKRPQSEWECILNIGVWFNKYCK 810
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804842|ref|XP_002870305.1| hypothetical protein ARALYDRAFT_915409 [Arabidopsis lyrata subsp. lyrata] gi|297316141|gb|EFH46564.1| hypothetical protein ARALYDRAFT_915409 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/775 (66%), Positives = 628/775 (81%), Gaps = 17/775 (2%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 60
MD+ AK+V LD+T EEEYA+ SKLL++F NI SIDKAW FNSG+G +QAMF++
Sbjct: 1 MDSCGTDSAKEVHVGLDSTTEEEYATQSKLLKEFINIPSIDKAWIFNSGSG--SQAMFAM 58
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
SQ NLLANKRKKFMLS ISKE+ SV F WAPFPVEMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKRKKFMLSGHISKESNQSVNFHWAPFPVEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 121 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180
NESP +FE+W+ S LEKEFH+PQ VHGSVY DGWFEGISWNSDET +AY+AEEPS KPT
Sbjct: 119 NESPTKFEIWNSSHLEKEFHIPQKVHGSVYVDGWFEGISWNSDETRVAYIAEEPSRPKPT 178
Query: 181 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
F LG K G+S DKD SWKG+GDWEE+WGE YAGKRQP+LFVI+++SG+V+ +KGIP+
Sbjct: 179 FDHLGYYKKGNSLDKDIGSWKGEGDWEEEWGEAYAGKRQPALFVIDVDSGKVEPIKGIPR 238
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298
S+SVGQVVW+P + QYLVF GW + RK GIKYCYNRPCA+YA++ + S+ E
Sbjct: 239 SISVGQVVWSPNSNESAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIK---FISD----E 291
Query: 299 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
K+ ++E P+ NLT+SISS F PRFS DGKFLVF+SAKS+VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDANE-FPIHNLTKSISSGFCPRFSKDGKFLVFVSAKSAVDSGAHWATESLHRIDWPS 350
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418
+G IVDVI VV C + CFPGLY + +L +PWLSDG +++LS+ W S +VI+SV
Sbjct: 351 DGKLPESTNIVDVIQVVNCPDDGCFPGLYVTGLLCDPWLSDGHSLILSTYWRSCRVILSV 410
Query: 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV-DKANKGTWSWL 477
N+ SGE+ R +P++S++SW+ LDGDNI+AVSSSPV VP++KYG V D A K +W W
Sbjct: 411 NLLSGEVSRASPSDSDYSWTAFALDGDNIVAVSSSPVSVPEIKYGKKVLDSAGKPSWKWS 470
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KKDCSC 536
N+ +PI RC EKV S LSS QF I+K+P+ VS L +GA+KP E I+VSSS K++ C
Sbjct: 471 NIQNPI-RCSEKVMSGLSSLQFKILKVPISDVSEGLAEGAKKPIEVIYVSSSKFKENGKC 529
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
DPLI VLHGGPHS+S S+S+++A+LSS+GYS LIVNYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 530 DPLIAVLHGGPHSISPCSFSRNMAYLSSIGYSQLIVNYRGSLGYGEDALQSLPGKVGSQD 589
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V DVL A+D+ I+MGLA+PSK+TV+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CN+A M
Sbjct: 590 VKDVLAAVDYAIEMGLADPSKITVLGGSHGGFLTTHLIGQAPNKFVAAAARNPVCNIASM 649
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
VG TDIPDWC+ E+YG ++ +TE+PS EDL+RFH SPI+HISK KTPT+FLLG+QDL
Sbjct: 650 VGITDIPDWCFFEAYGD--QNHYTEAPSSEDLSRFHQISPIAHISKAKTPTLFLLGSQDL 707
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
RVP+SNG QY RAL+EKGVE KV+ FPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 708 RVPISNGFQYVRALKEKGVEVKVLAFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 762
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566792|ref|NP_193193.2| acylaminoacyl-peptidase [Arabidopsis thaliana] gi|60729672|pir||JC8016 acylaminoacyl-peptidase (EC 3.4.19.1) - Arabidopsis thaliana gi|30466066|dbj|BAC76411.1| acylamino acid-releasing enzyme [Arabidopsis thaliana] gi|332658061|gb|AEE83461.1| acylaminoacyl-peptidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2581), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/775 (65%), Positives = 623/775 (80%), Gaps = 16/775 (2%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 60
MD+S AK++ LD T EEEYA+ SKLLQ+F NI SIDKAW FNS +G +QAMF++
Sbjct: 1 MDSSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNSDSG--SQAMFAL 58
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 121 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180
NESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS KPT
Sbjct: 119 NESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPT 178
Query: 181 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
F LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +KGIP+
Sbjct: 179 FDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPR 238
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298
S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ + E
Sbjct: 239 SISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT-------SDE 291
Query: 299 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
K+ + + P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRIDWPS 351
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418
+G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W S +VI+SV
Sbjct: 352 DGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVILSV 411
Query: 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF-VDKANKGTWSWL 477
N+ SGE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +W W
Sbjct: 412 NLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWS 471
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KKDCSC 536
N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K++ C
Sbjct: 472 NIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKENGKC 530
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
DPLI VLHGGPHSVS S+S+++A+LSS+GYS LI+NYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 531 DPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQD 590
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN+A M
Sbjct: 591 VKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASM 650
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
VG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG +DL
Sbjct: 651 VGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDL 708
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
RVP+SNG QY RAL+EKGVE KV+VFPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 709 RVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 763
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|78708638|gb|ABB47613.1| prolyl oligopeptidase family protein, expressed [Oryza sativa Japonica Group] gi|222612829|gb|EEE50961.1| hypothetical protein OsJ_31520 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/775 (62%), Positives = 599/775 (77%), Gaps = 16/775 (2%)
Query: 3 ASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQ 62
AS+AA K + +D + +EYAS SKLLQ+F I +I AW FNS N ++A+ S+ Q
Sbjct: 70 ASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQ 129
Query: 63 PNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 122
+LLANK++ F+L++ ISK + NSV FQW+PFP+EM+G SAV+PSPSG KLL++RN E++
Sbjct: 130 TDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDD 189
Query: 123 SPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182
SP + E+W QLE E H+ Q+VHGS+Y D WFEGISWN +ETL+AYVAEEP KP F+
Sbjct: 190 SPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFN 249
Query: 183 -LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS 241
G K GSS+KDC SWKG+GDWEE WGETY+ KR P+LFV+NI+SGEV+AVKGIP++LS
Sbjct: 250 DSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLS 309
Query: 242 VGQVVWAPLNEGLHQYLVFVGWSSET------RKLGIKYCYNRPCALYAVRVSLYKSEAS 295
VGQV+WAP + LVFV WSS+ RKLGIKYC+NRPCALYAV + EA
Sbjct: 310 VGQVIWAPSSS---HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVP-DPFMEEAD 365
Query: 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355
+ L S E P LT +SSAFFPRFSPDGK+LVF+SAKS++DSG H+AT+S+H+ID
Sbjct: 366 KPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKID 425
Query: 356 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415
WP +G L + DV+P+V C + CFPGLY S IL NPWL+DG TM+LSSIWGS +VI
Sbjct: 426 WPADGKLEGLS-VADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVI 484
Query: 416 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GTW 474
+SVNV S E+ R++P +S++SW++L LD DNI+AVSSS + VPQ+ YG V + K W
Sbjct: 485 LSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQW 544
Query: 475 SWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDC 534
W +++P +K+ ++L+ +FSI+KIP+ S L GA+ PFEAIFVS KD
Sbjct: 545 EWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVS---WKDS 601
Query: 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
+ P IVVLHGGPH+V SSYSKSLAFL S GY+LL+VNYRGSLGFGEEALQSLPG +GS
Sbjct: 602 ATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGS 661
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
QDVNDVLTA+D VI GL + SKV VVGGSHGGFLTTHLIGQAP FVAAAARNP+CNL+
Sbjct: 662 QDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLS 721
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714
LMVGTTDIP+WC+VE YG +GK+ F+E PS +DL +FH KSPISHISKV TPT+FLLGAQ
Sbjct: 722 LMVGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQ 781
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
DLRVPVSNGLQYAR L+E GVETK+IVFP D+HG+++PQSDFESFLNIG+WFKK+
Sbjct: 782 DLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKKH 836
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | ||||||
| TAIR|locus:2129920 | 764 | AARE "acylamino acid-releasing | 0.984 | 0.993 | 0.632 | 2.9e-270 | |
| UNIPROTKB|E2R7E8 | 734 | APEH "Uncharacterized protein" | 0.495 | 0.520 | 0.339 | 6.3e-89 | |
| MGI|MGI:88041 | 732 | Apeh "acylpeptide hydrolase" [ | 0.495 | 0.521 | 0.341 | 8e-89 | |
| UNIPROTKB|P80227 | 730 | APEH "Acylamino-acid-releasing | 0.546 | 0.576 | 0.331 | 1.3e-88 | |
| RGD|2125 | 732 | Apeh "N-acylaminoacyl-peptide | 0.495 | 0.521 | 0.339 | 3.5e-88 | |
| UNIPROTKB|P13676 | 732 | Apeh "Acylamino-acid-releasing | 0.495 | 0.521 | 0.339 | 3.5e-88 | |
| UNIPROTKB|I3LEU6 | 725 | I3LEU6 "Uncharacterized protei | 0.546 | 0.580 | 0.323 | 1.7e-86 | |
| UNIPROTKB|P13798 | 732 | APEH "Acylamino-acid-releasing | 0.500 | 0.527 | 0.330 | 4.4e-86 | |
| UNIPROTKB|F1SPS7 | 732 | APEH "Acylamino-acid-releasing | 0.495 | 0.521 | 0.326 | 4.4e-86 | |
| UNIPROTKB|I3LFX8 | 702 | I3LFX8 "Uncharacterized protei | 0.495 | 0.544 | 0.326 | 5.7e-86 |
| TAIR|locus:2129920 AARE "acylamino acid-releasing enzyme" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2599 (920.0 bits), Expect = 2.9e-270, P = 2.9e-270
Identities = 490/775 (63%), Positives = 594/775 (76%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 60
MD+S AK++ LD T EEEYA+ SKLLQ+F NI SIDKAW FNS +G+ QAMF++
Sbjct: 1 MDSSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNSDSGS--QAMFAL 58
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 121 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180
NESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS KPT
Sbjct: 119 NESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPT 178
Query: 181 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
F LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +KGIP+
Sbjct: 179 FDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPR 238
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYXXXXXXXX 298
S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ +
Sbjct: 239 SISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT-------SDE 291
Query: 299 XXXXXXXDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
+ P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRIDWPS 351
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXX 418
+G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W
Sbjct: 352 DGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVILSV 411
Query: 419 XXXXGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF-VDKANKGTWSWL 477
GE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +W W
Sbjct: 412 NLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWS 471
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCS-C 536
N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K+ C
Sbjct: 472 NIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKENGKC 530
Query: 537 DPLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
DPLI VLHGGPH +GYS LI+NYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 531 DPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQD 590
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN+A M
Sbjct: 591 VKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASM 650
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
VG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG +DL
Sbjct: 651 VGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDL 708
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
RVP+SNG QY RAL+EKGVE KV+VFPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 709 RVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 763
|
|
| UNIPROTKB|E2R7E8 APEH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 135/398 (33%), Positives = 211/398 (53%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 346 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFVVDTQMGSVTS 402
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++A S+P P +K G+ + T W+++
Sbjct: 403 LTAGGSGGSWKLLTIDRDLMVAQFSTPSLPPSLKVGFLPPAGKEQTVLWVSLEEA----- 457
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + S +++ P + + A FEAI + S+ D + P++V+ HGGP
Sbjct: 458 EPISDI--SWAIRVLQPPPEQENVQF---AGLDFEAILLQPSNPPDKTQVPMVVMPHGGP 512
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPGKVG QDV DV A++ V
Sbjct: 513 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGKVGHQDVKDVQFAVEQV 572
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 573 LQEEHFDADRVALMGGSHGGFLSCHLIGQYPETYRACVARNPVINIASMMGSTDIPDWCV 632
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 633 VEAGFPYSSDCL---PDLSVWAEMLDKSPIKYTPQVKTPLLLMLGQEDRRVPFKQGMEYY 689
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
RAL+ + V +++++P H + + + +SF+N LW
Sbjct: 690 RALKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 727
|
|
| MGI|MGI:88041 Apeh "acylpeptide hydrolase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
Identities = 136/398 (34%), Positives = 213/398 (53%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S+ G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSVQRSRQDLFAVDTQTGSVTS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLPPAGKEQSVSWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + + I + N+ + A FEAI + S+ D S P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLHPPPDQENV-QYADLDFEAILLQPSNSPDKSQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A+ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVQQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+ M+GTTDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIVSMMGTTDIPDWCM 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ G + + P + L KSPI +I +VKTP + +LG +D RVP GL+Y
Sbjct: 631 VET-GFPYSNDYL--PDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGLEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
AL+ + V +++++P H + + + +SF+N LW
Sbjct: 688 HALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVLW 725
|
|
| UNIPROTKB|P80227 APEH "Acylamino-acid-releasing enzyme" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
Identities = 147/444 (33%), Positives = 228/444 (51%)
Query: 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 381
PR SPD +V+L S V H L DW T +VDV+P Q E
Sbjct: 303 PRLSPDQCRIVYLQFPSLVP---HQQCGQLCLYDWYTRVTVV----VVDVVPR-QLGEN- 353
Query: 382 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRITPAESNFSWSLLT 441
F G+Y S + W +D ++ + G + +T S SW LLT
Sbjct: 354 -FSGIYCSLLPLGCWSADSQRVVFDTAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLT 412
Query: 442 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSI 501
+D D ++A S+P P +K G+ + W+++ E + + S +
Sbjct: 413 IDRDLMVAQFSTPNLPPCLKVGFLPPAGMEQEVVWVSLEEA-----EPIPDI--SWSIRV 465
Query: 502 MKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXXXXXXXXXX 561
++ P + A G FEAI + S+ D + P++V+ HGGPH
Sbjct: 466 LQPPPEQEHAQYV-GLD--FEAILIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAM 522
Query: 562 XXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVV 621
+G++ L+VNYRGS GFG++++ SLPG VGSQDV DV A++ V+ + +V ++
Sbjct: 523 LCKMGFAALLVNYRGSTGFGQDSILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALL 582
Query: 622 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 681
GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ D +
Sbjct: 583 GGSHGGFLSCHLIGQYPETYGACVVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD 642
Query: 682 SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741
P+V + +KSPI + +VKTP + +LG +D RVP G++Y RAL+ + V ++++
Sbjct: 643 -PNV--WSEMLNKSPIKYTPQVKTPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLL 699
Query: 742 FPNDVHGIERPQSDFESFLNIGLW 765
+P H + + + +SF+N +W
Sbjct: 700 YPKSTHSLSEVEVESDSFMNAVIW 723
|
|
| RGD|2125 Apeh "N-acylaminoacyl-peptide hydrolase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 135/398 (33%), Positives = 216/398 (54%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGMEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
RAL+ + V +++++P H + +++ +SF+N LW
Sbjct: 688 RALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLW 725
|
|
| UNIPROTKB|P13676 Apeh "Acylamino-acid-releasing enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 135/398 (33%), Positives = 216/398 (54%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGMEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
RAL+ + V +++++P H + +++ +SF+N LW
Sbjct: 688 RALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLW 725
|
|
| UNIPROTKB|I3LEU6 I3LEU6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 146/452 (32%), Positives = 228/452 (50%)
Query: 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 381
PR SPD +V+L S V H L DW T +S+ +VD++P Q G+
Sbjct: 290 PRLSPDQCRIVYLRFPSLVP---HQQCGQLCLYDWYTR--VTSV--VVDIVPR-QL--GE 339
Query: 382 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRIT------PAE--S 433
F G+Y S + W +D ++ S G + +T P + S
Sbjct: 340 DFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTSLTAGLMVLPLKWGS 399
Query: 434 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSL 493
SW LLT+D D ++ S+P P +K G+ + SW+++ E +
Sbjct: 400 GGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA-----EPFPDI 454
Query: 494 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXX 553
S +++ P + A FEAI + S+ + + P++V+ HGGPH
Sbjct: 455 --SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGPHSSFVT 509
Query: 554 XXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613
+G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V+
Sbjct: 510 AWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHF 569
Query: 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673
+ +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ S
Sbjct: 570 DAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCMVEAGFS 629
Query: 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733
D P + KSPI + +VKTP + +LG +D RVP G++Y R L+ +
Sbjct: 630 YSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYYRVLKAR 686
Query: 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
V +++++P H + + + +SF+N LW
Sbjct: 687 NVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 718
|
|
| UNIPROTKB|P13798 APEH "Acylamino-acid-releasing enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 133/402 (33%), Positives = 210/402 (52%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 344 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQVGTVTS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++A S+P P +K G+ + + W+++
Sbjct: 401 LTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLPSAGKEQSVLWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + + I + N+ + A FEAI + D + P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLQPPPEQENV-QYAGLDFEAILLQPGSPPDKTQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + S V ++GGSHGGF++ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARNPVINIASMLGSTDIPDWCV 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ D P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVKTPLLLMLGQEDRRVPFKQGMEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
RAL+ + V +++++P H + + + +SF+N LW + +
Sbjct: 688 RALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVLWLRTH 729
|
|
| UNIPROTKB|F1SPS7 APEH "Acylamino-acid-releasing enzyme" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 130/398 (32%), Positives = 207/398 (52%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 401 LTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 456 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 631 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
R L+ + V +++++P H + + + +SF+N LW
Sbjct: 688 RVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
|
| UNIPROTKB|I3LFX8 I3LFX8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 130/398 (32%), Positives = 207/398 (52%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 314 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 370
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 371 LTAGGSGGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 425
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 426 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 480
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 481 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 540
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 541 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 600
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 601 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYY 657
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
R L+ + V +++++P H + + + +SF+N LW
Sbjct: 658 RVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 695
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8R146 | APEH_MOUSE | 3, ., 4, ., 1, 9, ., 1 | 0.3337 | 0.8599 | 0.9057 | yes | no |
| P13798 | ACPH_HUMAN | 3, ., 4, ., 1, 9, ., 1 | 0.3144 | 0.8599 | 0.9057 | yes | no |
| P19205 | ACPH_PIG | 3, ., 4, ., 1, 9, ., 1 | 0.3232 | 0.8534 | 0.8989 | yes | no |
| P80227 | ACPH_BOVIN | 3, ., 4, ., 1, 9, ., 1 | 0.3240 | 0.8534 | 0.9013 | yes | no |
| P13676 | ACPH_RAT | 3, ., 4, ., 1, 9, ., 1 | 0.3268 | 0.8599 | 0.9057 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 771 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 9e-45 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 7e-33 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 3e-11 | |
| COG0657 | 312 | COG0657, Aes, Esterase/lipase [Lipid metabolism] | 5e-09 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 5e-09 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 6e-09 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 5e-08 | |
| COG0596 | 282 | COG0596, MhpC, Predicted hydrolases or acyltransfe | 1e-04 | |
| pfam07859 | 207 | pfam07859, Abhydrolase_3, alpha/beta hydrolase fol | 1e-04 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 3e-04 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 3e-04 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 8e-04 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 9e-45
Identities = 114/467 (24%), Positives = 186/467 (39%), Gaps = 52/467 (11%)
Query: 305 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364
+ + +LT S F DGK + L +S L +G+ SS
Sbjct: 204 GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSS 263
Query: 365 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424
+ V +GD GL + GSS + V
Sbjct: 264 GDDTRGAWAVEGGLDGD---GLLFIAT---------------DGGGSSPLF---RVDDLG 302
Query: 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPIS 484
+ + +DG + SSP P Y Y + K ++S +
Sbjct: 303 GGVEGLSGDDGGVPGFDVDGRKLALAYSSP-TEPPEIYLYDRGEEAK-------LTSSNN 354
Query: 485 RCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLH 544
+KVK L + + + L K KK PLIV +H
Sbjct: 355 SGLKKVK-LAEPEPVTYKSNDGETIHGWLYKPPGFDPR--------KKY----PLIVYIH 401
Query: 545 GGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI 604
GGP + S++ + L+S GY++L NYRGS G+G E ++ G G D+ D++ A+
Sbjct: 402 GGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAV 461
Query: 605 DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 664
D ++ + L +P ++ + GGS+GG++T + P F AA A + L G +
Sbjct: 462 DALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR-FKAAVAVAGGVDWLLYFGESTEGL 520
Query: 665 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724
E G + D ++ +SPI + +KTP + + G +D RVP+
Sbjct: 521 RFDPEENGGGPPE---------DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAE 571
Query: 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
Q AL+ KG +++VFP++ HG RP++ + I WFK++ K
Sbjct: 572 QLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-33
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613
S+S +L L+ GY + + N RGS G+G + G +G + +D + A +++I G
Sbjct: 2 SFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYV 61
Query: 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673
+P ++ + GGS+GG+LT + Q PD F AA A P+ + + + E Y
Sbjct: 62 DPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVD---WLTYMSDTSP-FTERYME 117
Query: 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALR 731
G ++ + SP S VK P + + G D RVP + L+ AL+
Sbjct: 118 WG-------NPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQ 170
Query: 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
KG +++FP++ HG +P++ E + + K
Sbjct: 171 AKGKNVLLLIFPDEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-11
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 36/216 (16%)
Query: 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599
+V+LHG S S+ L++ GY +L + G G+ D D
Sbjct: 1 VVLLHGAGGSAE--SWRPLAEALAA-GYRVLAPDLPG---HGDSDGPPRTPYSLEDDAAD 54
Query: 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659
+ +D + V +VG S GG + + P++ L L+
Sbjct: 55 LAALLDAL------GLGPVVLVGHSLGGAVALAAAARRPERVAG---------LVLISPP 99
Query: 660 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 719
+ + + + + DL ++++ P + + G D VP
Sbjct: 100 LRDLEE-LLAADAAALLALLRAALLDADLRE--------ALARLTVPVLVIHGEDDPLVP 150
Query: 720 VSNGLQYARALREKGVETKVIVFPNDVHGI--ERPQ 753
+ A AL +++V P H E P+
Sbjct: 151 PEAARRLAEALPGA----ELVVLPGAGHLPHLEHPE 182
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 5e-09
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 27/229 (11%)
Query: 535 SCDPLIVVLHGGPH-SVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKV 592
+ P+++ LHGG SL ++ +A L++ G ++ V+YR + P
Sbjct: 77 ATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA-----------PEHP 125
Query: 593 GSQDVNDVLTAIDHVIDMGL---ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649
+ D A + +PS++ V G S GG L L A D+ + A
Sbjct: 126 FPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQV 185
Query: 650 LC--NLALMVGTTDIPDWCYVESYGS-KGKDSFTES--PSVEDLTRFHSKSPIS--HISK 702
L L L +P + + + F + + D SP++ +S
Sbjct: 186 LISPLLDLTSSAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPE-ASPLASDDLSG 244
Query: 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751
+ PT+ D G YA LR GV ++ V+P +HG +
Sbjct: 245 LP-PTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVYPGMIHGFDL 290
|
Length = 312 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 36/210 (17%), Positives = 63/210 (30%), Gaps = 65/210 (30%)
Query: 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598
L+V+LHG +Y+ L+S GY+++ V+Y G S
Sbjct: 1 LVVLLHGA--GGDPEAYAPLARALASRGYNVVAVDYPGHGA--------------SLGAP 44
Query: 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658
D + V+ +P ++ +VG S GG + L + P A
Sbjct: 45 DA----EAVLADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAG--------- 91
Query: 659 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 718
+ ++K+ P + + G +D V
Sbjct: 92 ---------------------------------DPPDALDDLAKLTVPVLIIHGTRDGVV 118
Query: 719 PVSNGLQYARALREKGVETKVIVFPNDVHG 748
P A AL +++V H
Sbjct: 119 PPEEAEALAAALPGP---AELVVIEGAGHS 145
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-09
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 532 KDCSCDPLIVVLHG-GPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589
K D +L+ G ++SL+ +S S G ++ N RG FG E Q+
Sbjct: 414 KGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGM 473
Query: 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649
+ +D + + +I G+ +P K+ + GGS+GG L + Q P+ F AA P
Sbjct: 474 KENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVP 533
Query: 650 LCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT--P 706
L + M+ + ++ YG+ + P ED + SP ++ + P
Sbjct: 534 LLD---MLRYHLLTAGSSWIAEYGN------PDDP--EDRAFLLAYSPYHNLKPGQKYPP 582
Query: 707 TIFLLGAQDLRVPVSNGLQYARALREKGVET 737
T+ D RV ++ ++A L+E G
Sbjct: 583 TLITTSLHDDRVHPAHARKFAAKLQEVGAPV 613
|
Length = 648 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 48/220 (21%), Positives = 81/220 (36%), Gaps = 54/220 (24%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGF-------GEEALQSLP 589
P ++VLH L+ + + +A L+ GY +L + G G E L
Sbjct: 28 PGVIVLHEIFG---LNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLV 84
Query: 590 GKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648
+V +V D+ A+D++ +P ++ VVG GG L + AA R
Sbjct: 85 ERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLA-----------LLAATRA 133
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
P A+ + YG D + K+K P +
Sbjct: 134 PEVKAAV----------AF---YGGLIAD------------------DTADAPKIKVPVL 162
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
L +D +P ++ A AL + GV+ + ++P HG
Sbjct: 163 LHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHG 202
|
Length = 236 |
| >gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (103), Expect = 1e-04
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
P +V+LHG P S S+ + + Y ++ + RG G G S
Sbjct: 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRG---HG---RSDPAGYSLSAY 74
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+D+ +D + KV +VG S GG + L + PD+ P L+
Sbjct: 75 ADDLAALLDAL------GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLL 128
Query: 657 VGTTDIPDW 665
P
Sbjct: 129 EAALRQPAG 137
|
Length = 282 |
| >gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 40/174 (22%)
Query: 597 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN---- 648
+ D A+ +H ++G A+PS++ V G S GG L VA AR+
Sbjct: 49 IEDAYAALRWLAEHAWELG-ADPSRIAVAGDSAGGNLAAA---------VALRARDEGLP 98
Query: 649 -PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 707
P + + G + ESY ++ R P
Sbjct: 99 LPAGQVLIYPGLDLRTE---SESYNEYADGPLLTRDDMDWFWR-LYLPGAD----RDDPL 150
Query: 708 IFLLGAQDLR-VP------------VSNGLQYARALREKGVETKVIVFPNDVHG 748
L A DL +P G YA LR GVE +++ +P +HG
Sbjct: 151 ASPLFAADLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVEVELVEYPGMIHG 204
|
This catalytic domain is found in a very wide range of enzymes. Length = 207 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 40/168 (23%)
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALM 656
D + A H++ G +P ++ +GGS GG L + APD F A+ P + L M
Sbjct: 509 TDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTM 568
Query: 657 ------VGTTDIPDW---------CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 701
+ T+ +W Y++SY SP ++
Sbjct: 569 LDPSLPLTVTEWDEWGNPLDPEYYDYIKSY-----------------------SPYDNVE 605
Query: 702 KVKTPTIF-LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
P I G D RV ++ LRE + ++ ++
Sbjct: 606 AQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDA 653
|
Length = 682 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+PL+V +G + + +S S L G+ IV+ RG G++ + GK +
Sbjct: 445 NPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYED--GKFLKKK 502
Query: 597 --VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
ND L A D ++ +G +PS +GGS GG L I Q P+ F A+ P ++
Sbjct: 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVV 562
Query: 655 LMVGTTDIP 663
+ IP
Sbjct: 563 TTMLDESIP 571
|
Length = 686 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 48/227 (21%), Positives = 72/227 (31%), Gaps = 56/227 (24%)
Query: 538 PLIVVLH--GGPHSVSLSSYSKSLAFLSSVGYSLLIVN--YRGSLGFG-----EEALQSL 588
P++VV G ++ A L+ GY L + R L A++ L
Sbjct: 15 PVVVVFQEIFGVNNF----IRDIAARLAEEGYVALCPDLYARQGLDPTDPREAARAMRGL 70
Query: 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648
K V+D+L AI+++ + KV VVG GG L AARN
Sbjct: 71 LSKRMEAVVDDLLAAINYLRGQPYVDTKKVGVVGFCLGGRLA-----------FLLAARN 119
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
+ GT P P+ +K P +
Sbjct: 120 GVDAAVSFYGTGPEP--------------------------------PLDEAPAIKAPIL 147
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755
G +D VP ALR V+ ++ V+P H +
Sbjct: 148 AHFGEEDPFVPAEARDLLEEALRAANVDHELHVYPGAGHAFAADGRE 194
|
Length = 215 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.97 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.97 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.96 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.96 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.95 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.95 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.93 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.93 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.88 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.88 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.88 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.87 | |
| PRK10566 | 249 | esterase; Provisional | 99.87 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.87 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.87 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.87 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.87 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.84 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.84 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.83 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.83 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.83 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.83 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.81 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.81 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.81 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.8 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.8 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.79 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.79 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.78 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.77 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.77 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.76 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.74 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.73 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.73 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.73 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.72 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.72 | |
| PLN02511 | 388 | hydrolase | 99.72 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.72 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.71 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.71 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.7 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.7 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.69 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.69 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.69 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.69 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.68 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.68 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.68 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.68 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.66 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.66 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.66 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.65 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.65 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.65 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.64 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.64 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.63 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.63 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.63 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.62 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.62 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.62 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.62 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.61 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.6 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.59 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.59 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.59 | |
| PLN00021 | 313 | chlorophyllase | 99.59 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.58 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.58 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.58 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.58 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.57 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.57 | |
| PLN02578 | 354 | hydrolase | 99.57 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.57 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.56 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.56 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.56 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.56 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.56 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.55 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.55 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.55 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.55 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.53 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.53 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.52 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.5 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.49 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.47 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.47 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.47 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.44 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.43 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.39 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.39 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.38 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.36 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.31 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.31 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.31 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.3 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.3 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.29 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.29 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.29 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.28 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.26 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.26 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.25 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.25 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.24 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 99.23 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.22 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.22 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.21 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.21 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.2 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.2 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.19 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 99.19 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.17 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.16 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.15 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.14 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.13 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.12 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.12 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.12 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.07 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.07 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 99.06 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.06 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 99.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.06 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.06 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.05 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.05 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 99.05 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.04 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.03 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.02 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.01 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.01 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.0 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.98 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.97 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.96 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.95 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.92 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.91 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.91 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.9 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.89 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.88 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.87 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.87 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.86 | |
| PTZ00421 | 493 | coronin; Provisional | 98.86 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.85 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.85 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.85 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.85 | |
| PTZ00421 | 493 | coronin; Provisional | 98.85 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.84 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.83 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.83 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.82 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.82 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.82 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.81 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.8 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.79 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.79 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.77 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.76 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.76 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.75 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.74 | |
| PTZ00420 | 568 | coronin; Provisional | 98.74 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.73 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.71 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.7 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.7 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.7 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.68 | |
| PTZ00420 | 568 | coronin; Provisional | 98.67 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.67 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.66 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.65 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.65 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.64 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.63 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.62 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.6 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.58 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.57 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.56 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.55 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.52 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.52 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.52 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.5 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.49 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.49 | |
| PRK10115 | 686 | protease 2; Provisional | 98.48 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.47 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.47 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.46 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.45 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.45 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.45 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.43 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.4 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.38 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.35 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.35 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.33 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.33 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.33 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.32 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.31 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.31 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.3 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.29 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.29 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.28 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.23 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.23 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.23 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.21 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.2 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 98.19 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.19 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 98.16 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.16 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.14 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.14 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.13 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.12 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.12 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.11 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.08 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.07 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.06 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.03 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.03 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.02 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.01 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.98 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.96 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.95 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.95 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 97.91 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.88 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.88 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.88 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.84 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.83 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.83 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.83 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.83 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.78 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.76 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.76 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.75 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.74 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.72 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.72 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.71 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.7 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.68 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.66 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.66 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.63 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.63 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.62 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.62 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.62 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.61 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.61 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.61 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.6 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.6 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.6 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.59 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.58 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.57 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.57 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.56 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.56 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.55 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.53 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.52 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.5 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.49 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.49 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.47 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.45 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.43 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.42 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.4 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.39 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.38 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.36 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.35 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.31 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 97.3 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.27 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.27 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.26 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.24 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.22 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.21 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.19 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.18 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.17 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.17 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.17 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.16 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.13 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.1 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.09 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.09 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.07 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 97.07 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 97.07 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.06 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.03 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.0 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 97.0 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.0 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 96.94 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.92 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 96.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.91 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.91 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.87 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.85 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.82 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.82 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.78 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 96.77 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.75 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.69 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.68 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.6 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.53 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.53 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 96.53 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.49 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.48 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.46 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.43 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 96.43 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.39 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 96.35 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 96.32 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.31 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.31 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.29 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.27 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 96.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.24 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.2 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.14 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 96.14 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 96.08 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 96.07 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 96.06 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.0 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 95.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.81 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 95.79 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 95.74 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 95.74 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.73 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.71 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.67 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.63 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 95.63 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.62 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 95.59 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 95.54 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 95.48 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 95.38 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 95.36 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 95.35 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 95.34 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 95.34 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.24 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 95.19 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 95.15 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 95.13 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.01 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 94.99 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 94.92 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 94.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 94.82 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.71 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.62 | |
| PLN02209 | 437 | serine carboxypeptidase | 94.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.48 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 94.46 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 94.34 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.33 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 94.26 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 94.09 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 93.98 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 93.85 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 93.69 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.56 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 93.51 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 93.49 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 93.33 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.28 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 93.25 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.12 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 93.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 92.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 92.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 92.82 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 92.8 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 92.67 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 92.64 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 92.63 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 92.27 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 92.21 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.18 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 92.11 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 91.94 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 91.91 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 91.66 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 91.64 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 91.57 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 91.51 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 91.42 | |
| PLN02517 | 642 | phosphatidylcholine-sterol O-acyltransferase | 91.28 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 91.23 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 90.99 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 90.88 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 90.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 90.65 | |
| PLN02454 | 414 | triacylglycerol lipase | 90.65 | |
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 90.52 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 90.43 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 90.16 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 89.83 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 89.81 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 89.67 | |
| COG4287 | 507 | PqaA PhoPQ-activated pathogenicity-related protein | 89.66 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 89.22 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 89.07 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 89.03 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 88.98 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 88.79 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.71 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=436.17 Aligned_cols=608 Identities=22% Similarity=0.307 Sum_probs=423.8
Q ss_pred HhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCe
Q 004149 33 DFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK 112 (771)
Q Consensus 33 ~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~ 112 (771)
.+..+..+....+ +++|..++|..+..+.........+|+.+... ...++.. ..+..+.|||||+.
T Consensus 8 ~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~------~~~~~~~~spdg~~ 73 (620)
T COG1506 8 DLLALARVSDPRV----SPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFG------GGVSELRWSPDGSV 73 (620)
T ss_pred HHHhhhcccCccc----CCCCceeEEeeccccccccccccceEEEeccc----ccccccC------CcccccccCCCCCE
Confidence 4445555555444 45788999998887777778888899854321 1222222 56888999999999
Q ss_pred EEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCC
Q 004149 113 LLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSD 192 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 192 (771)
++|.++..+...++|++..++ .+......+ ....|||+|+.+++.......+.. +.
T Consensus 74 ~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~~---------~~-- 129 (620)
T COG1506 74 LAFVSTDGGRVAQLYLVDVGG---LITKTAFGV----------SDARWSPDGDRIAFLTAEGASKRD---------GG-- 129 (620)
T ss_pred EEEEeccCCCcceEEEEecCC---ceeeeeccc----------ccceeCCCCCeEEEEecccccccC---------Cc--
Confidence 999985554567888887434 222222333 488899999999994332211100 00
Q ss_pred ccCCCCCC-cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 193 KDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 193 ~~~~~~~~-~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
+...... .+.+..+ | ....+++++|..+ ....+ ......+..+.|.+|++. ++.........
T Consensus 130 -~~~~~~~~~~~~~~~-g-----~~~~~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 192 (620)
T COG1506 130 -DHLFVDRLPVWFDGR-G-----GERSDLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDDAD--- 192 (620)
T ss_pred -eeeeecccceeecCC-C-----CcccceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeeccccC---
Confidence 0000000 1111211 1 2468999999887 44444 455556666777777775 66555332200
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
..-...+.... .++....++.....+..+.|.+||+.+++....... .......+
T Consensus 193 -----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~---~~~~~~~~ 247 (620)
T COG1506 193 -----PWVTNLYVLIE-----------------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR---GLAEGDFI 247 (620)
T ss_pred -----CceEeeEEEec-----------------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc---CccccceE
Confidence 00112333332 467788888888889999999999999999887631 11234456
Q ss_pred eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecC
Q 004149 352 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 352 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~ 430 (771)
++++...+..... ..... . .. ......+.-++..++|.... .+...++.++...+....+..
T Consensus 248 ~~~~~~~~~~d~~-------~~~~~----~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~ 310 (620)
T COG1506 248 LLLDGELGEVDGD-------LSSGD----D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSG 310 (620)
T ss_pred EEEecccccccee-------eccCC----c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecC
Confidence 6666222222110 00000 0 00 01111122345556666665 666777777754554444444
Q ss_pred CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcc-eeeeecccCc
Q 004149 431 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF-SIMKIPVKGV 509 (771)
Q Consensus 431 ~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~ 509 (771)
+.. ....|+.+++.+++..++++.|+++|+.+.. .. ..+ +. ..+ ..+....+ ..+
T Consensus 311 ~~~--~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~~-~~--~~~--~~------~~~----~~~~~~~~~~~e------- 366 (620)
T COG1506 311 DDG--GVPGFDVDGRKLALAYSSPTEPPEIYLYDRG-EE--AKL--TS------SNN----SGLKKVKLAEPE------- 366 (620)
T ss_pred CCc--eEEEEeeCCCEEEEEecCCCCccceEEEcCC-Cc--eEE--ee------ccc----ccccccccCCce-------
Confidence 433 4567777999999999999999999998761 11 111 00 000 00111111 111
Q ss_pred ccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 510 SANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 510 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
.+++...+|.++++|++.|.++++.+++|+||++||||.......+...++.|+.+||+|+.+||||+.|||++|.+...
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~ 446 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIR 446 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhh
Confidence 12556668999999999999988888899999999999887777888899999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
+.++..+.+|+.++++++.+.+.+|++|++|+|+|+||+++++++.+.| .|+++++..+.+++..+....+...+....
T Consensus 447 ~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (620)
T COG1506 447 GDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPE 525 (620)
T ss_pred hccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHH
Confidence 9999999999999999999999999999999999999999999999877 899999999988887776665554433222
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.... .+.. +.+.+...||+.+++++++|+|||||+.|.+||.+|+++|+++|+.+|+++++++||+++|++
T Consensus 526 ~~~~--------~~~~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~ 596 (620)
T COG1506 526 ENGG--------GPPE-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGF 596 (620)
T ss_pred HhCC--------Cccc-ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCC
Confidence 2211 1112 668899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhC
Q 004149 750 ERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
..+++....++.+++||+++|+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 597 SRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred CCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999985
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=384.75 Aligned_cols=527 Identities=14% Similarity=0.124 Sum_probs=358.9
Q ss_pred ceEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....|||||++|||..+..+ +..+++.++ .+|... ...+.... ..++|++||+.|+|.......
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~-- 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE----------PSFVWANDSWTFYYVRKHPVT-- 195 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc----------eEEEEeeCCCEEEEEEecCCC--
Confidence 456789999999999987653 344566666 444311 11111111 368999999999998764210
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeeccCCCC-CCccceEEEec-CCCCC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPK-SLSVGQVVWAP-LNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~~~~~-~~~~~~~~wsp-Dg~~~ 254 (771)
....+||.+++.++ +.+.+ ... +....-..|.+ |++.
T Consensus 196 ------------------------------------~~~~~v~~h~lgt~~~~d~lv--~~e~~~~~~~~~~~s~d~~~- 236 (686)
T PRK10115 196 ------------------------------------LLPYQVWRHTIGTPASQDELV--YEEKDDTFYVSLHKTTSKHY- 236 (686)
T ss_pred ------------------------------------CCCCEEEEEECCCChhHCeEE--EeeCCCCEEEEEEEcCCCCE-
Confidence 02368999999988 44445 221 11122234545 8887
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC-CccccceeecCCCCEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~p~~SpDG~~l~f 333 (771)
+++.+.. +..+.+++++.+. ..++.+.+... ......+ ...+..+++
T Consensus 237 ---l~i~~~~------------~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~--~~~~~~ly~ 284 (686)
T PRK10115 237 ---VVIHLAS------------ATTSEVLLLDAEL---------------ADAEPFVFLPRRKDHEYSL--DHYQHRFYL 284 (686)
T ss_pred ---EEEEEEC------------CccccEEEEECcC---------------CCCCceEEEECCCCCEEEE--EeCCCEEEE
Confidence 7644421 2234677777421 23333333322 2222222 234567777
Q ss_pred EecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~ 412 (771)
.++.. .....|..+++.. ++.+.+.... ++ ..+..+.++ ++.|+++...++.
T Consensus 285 ~tn~~-------~~~~~l~~~~~~~~~~~~~l~~~~-----------~~-------~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 285 RSNRH-------GKNFGLYRTRVRDEQQWEELIPPR-----------EN-------IMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred EEcCC-------CCCceEEEecCCCcccCeEEECCC-----------CC-------CEEEEEEEE--CCEEEEEEEeCCE
Confidence 77664 2245688888763 2211111110 00 012334555 5579999999999
Q ss_pred eEEEEEECCCCcEEEecC-CCCCceeeEEe--ecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCC-CCCCch
Q 004149 413 QVIISVNVSSGELLRITP-AESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP-ISRCPE 488 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s--~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 488 (771)
..|+.+++.++++..|.. .........++ .+++.+++..+++.+|+++|.+++.+++ ++.++.+ ...
T Consensus 338 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~------~~~l~~~~~~~--- 408 (686)
T PRK10115 338 TSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE------RRVLKQTEVPG--- 408 (686)
T ss_pred EEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc------EEEEEecCCCC---
Confidence 999999988778887763 22222222233 5667899999999999999999976542 1112111 111
Q ss_pred hhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcE
Q 004149 489 KVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS 568 (771)
Q Consensus 489 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~ 568 (771)
+....+....+ .+.+.||.+|+++++.++.....++.|+||++|||++......|....+.|+++||+
T Consensus 409 -----~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~ 476 (686)
T PRK10115 409 -----FDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFV 476 (686)
T ss_pred -----cCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcE
Confidence 11222233333 456778999999666655433456779999999999988788898888999999999
Q ss_pred EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecC
Q 004149 569 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648 (771)
Q Consensus 569 V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 648 (771)
|+.+|+||++++|+.|.+......+..+++|+++++++|++++.+|++|++++|.|+||+++.+++.++|++|+|+|+..
T Consensus 477 v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~v 556 (686)
T PRK10115 477 YAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQV 556 (686)
T ss_pred EEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecC
Confidence 99999999999999999877767777889999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcCCCCC-cchhhhhccCCCCCcCCCCCC-hhhHHHHhhcCccccccCCCCc-EEEEeeCCCCccCcHHHHH
Q 004149 649 PLCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 649 p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~ 725 (771)
|++|+.......+++ .+...+.+|. +. .+..+.+...||+.++.+++.| +||+||.+|.+||+.++.+
T Consensus 557 p~~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k 627 (686)
T PRK10115 557 PFVDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAK 627 (686)
T ss_pred CchhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHH
Confidence 999998765444433 2333344443 32 3445666789999999999999 6778999999999999999
Q ss_pred HHHHHHhCCCCEEEEEe---CCCCccCCCCCChHHHHH---HHHHHHHHHh
Q 004149 726 YARALREKGVETKVIVF---PNDVHGIERPQSDFESFL---NIGLWFKKYC 770 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~---~~~~H~~~~~~~~~~~~~---~i~~wl~~~l 770 (771)
++++|++.+.+++++++ +++||+.. .++...++ ....|+-..+
T Consensus 628 ~~a~Lr~~~~~~~~vl~~~~~~~GHg~~--~~r~~~~~~~A~~~aFl~~~~ 676 (686)
T PRK10115 628 WVAKLRELKTDDHLLLLCTDMDSGHGGK--SGRFKSYEGVAMEYAFLIALA 676 (686)
T ss_pred HHHHHHhcCCCCceEEEEecCCCCCCCC--cCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888888 99999843 33334443 3456665543
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=322.71 Aligned_cols=613 Identities=18% Similarity=0.234 Sum_probs=382.6
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..++|.+.+.+..+....-+........++++.... +.. +...+........|||.|.+++|+.+++ ++
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy 171 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE-KLH-----PPEYEGSKIQYASWSPLGNDLAYVLHNN-----IY 171 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-ccc-----CcccCCCeeEEEEEcCCCCEEEEEEecc-----cc
Confidence 345677777776654333333444455555554443 011 1111113357899999999999998764 22
Q ss_pred EEe-cCCcceEEEec------CCcccccccCCCcc---cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004149 128 ELW-SQSQLEKEFHV------PQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~------~~~~~g~~~~~~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
.-. ......+++.- -.+..+++|.++.+ ....|||||..++|................... .....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~-~~yp~--- 247 (755)
T KOG2100|consen 172 YQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDD-DQYPK--- 247 (755)
T ss_pred cccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccceEEecccccc-ccCcc---
Confidence 111 11111112211 12334455554433 366799999999998765433210000000000 00000
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccC----CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004149 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~----~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
...+.|... |. ......|+++|........+.. ......+....|.-+.+ +.++-
T Consensus 248 -~~~~~ypk~-g~---~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~----------- 306 (755)
T KOG2100|consen 248 -STNFHYPKA-GA---PNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEK-----VLVVW----------- 306 (755)
T ss_pred -cceeecCCC-CC---CCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCcc-----EEEEE-----------
Confidence 001111111 11 1134578888855443333110 01122445667777644 44332
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--e--ecCCC---CccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004149 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--V--NLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~--~lt~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
.+|.+.+-...+.+ ..+.+ . ..... ......|.++.|+....+...... +
T Consensus 307 --~~r~~~~~~~~~cd---------------~~~~~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~---~--- 363 (755)
T KOG2100|consen 307 --TNREQNISVETLCD---------------TPGICRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD---G--- 363 (755)
T ss_pred --EccCCCeeeeEEec---------------CcccceeeEeccccccccccccccceEeecCCceeEEEeecc---C---
Confidence 12222222222210 00111 0 01111 011135889999865555554431 2
Q ss_pred ccccceeeecCCC-CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECCCC
Q 004149 347 ATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSG 423 (771)
Q Consensus 347 ~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~--~~~~~l~~~d~~tg 423 (771)
.-.++..+....+ ..+.++.+...+..+ +.|..++++++|.+.. .+..+||.+++.++
T Consensus 364 ~~~hi~~~~~~~~~~~~~lt~g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 364 GYNHIAYLKLSNGSEPRMLTSGNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred CEEEEEEEEcCCCCccccccccceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 1355666665555 555666666554422 2355788899998886 56778999999998
Q ss_pred cEEEecCCCC----CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcc
Q 004149 424 ELLRITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF 499 (771)
Q Consensus 424 ~~~~l~~~~~----~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 499 (771)
....++.... ......++...+.+++.+++|..|.. .+-...... .. .|..| +.+..+.+.+.....
T Consensus 425 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~-~~~~~~~~~-~~--~~~~L-----e~n~~~~~~~~~~~~ 495 (755)
T KOG2100|consen 425 TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDG-QLTRHSSKN-SK--TIVVL-----ETNEELKKTIENVAL 495 (755)
T ss_pred ccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcc-eeecccccc-ce--EEEEe-----ccChhhHHHhhcccC
Confidence 8887775544 23334556677889999999999975 222222221 11 12222 234444444432222
Q ss_pred eeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---cchHHHHHHHHCCcEEEEECCCC
Q 004149 500 SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRG 576 (771)
Q Consensus 500 ~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~V~~~d~rG 576 (771)
|..+. ....-+|....+.++.|+++++.+++|++|.+||||.+.... ........+...|++|+.+|+||
T Consensus 496 -----p~~~~--~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RG 568 (755)
T KOG2100|consen 496 -----PIVEF--GKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRG 568 (755)
T ss_pred -----Cccee--EEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCC
Confidence 21111 111227888999999999998999999999999999743221 12223345678999999999999
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC-CceeEEEecCCccchhh
Q 004149 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLAL 655 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-~~~~a~v~~~p~~~~~~ 655 (771)
++++|..++..+++++|..+++|+..+++++.+.+.+|.+||+|+|+|+||+++++++...+ +.|+|+++.+|+.++.
T Consensus 569 s~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~- 647 (755)
T KOG2100|consen 569 SGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL- 647 (755)
T ss_pred cCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-
Confidence 99999999999999999999999999999999999999999999999999999999999987 7889999999999987
Q ss_pred hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcE-EEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~-Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
++...... ++++.+. ++...|.+.++...+..++.|. |++||+.|..|+++++.+++++|+.+|
T Consensus 648 ~yds~~te--------------rymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~g 712 (755)
T KOG2100|consen 648 YYDSTYTE--------------RYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAG 712 (755)
T ss_pred eecccccH--------------hhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCC
Confidence 43333222 2223333 2223388888999999998775 999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++++||+++|++.........+..+..||...+
T Consensus 713 v~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 713 VPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred CceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 999999999999999988877789999999998543
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=273.04 Aligned_cols=339 Identities=19% Similarity=0.268 Sum_probs=258.3
Q ss_pred CEEEEEeeeCC--eeEEEEEECC-CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeee
Q 004149 401 CTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWL 477 (771)
Q Consensus 401 ~~l~~~~~~~~--~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~ 477 (771)
+.+||....+. ..+||.+... .|++.+++.....+. ..++.+=+.++...++...|+++.++.+..+++.
T Consensus 516 ~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~-~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~------ 588 (867)
T KOG2281|consen 516 KLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHS-CELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEND------ 588 (867)
T ss_pred eEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccc-hhhhhhhhhHhhhhhcCCCCceEEEEeccCCccC------
Confidence 45566665444 3479999887 899999998765333 3466666678888899999999999998765411
Q ss_pred ccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cch
Q 004149 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYS 556 (771)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~ 556 (771)
++.....-..-+++.......-.|.+ .+.+....|..+.|.+|+|.++++.+++|+|++++|||...... .|.
T Consensus 589 ----~l~~q~~~~~~l~~~~~~~Pdy~p~e--if~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfk 662 (867)
T KOG2281|consen 589 ----PLPKQVSFWAILVSGAPPPPDYVPPE--IFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFK 662 (867)
T ss_pred ----cccchhhHHHHHHhcCCCCCccCChh--heeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeecccc
Confidence 11100000111111111111111111 12345567899999999999999999999999999999764322 222
Q ss_pred ----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHH
Q 004149 557 ----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTT 631 (771)
Q Consensus 557 ----~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~ 631 (771)
.....|+++||.|+.+|-||+.-.|..|...+..+.|..+++|...++++|.++. ++|.+||+|-|+|+||++++
T Consensus 663 gi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSl 742 (867)
T KOG2281|consen 663 GIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSL 742 (867)
T ss_pred ceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHH
Confidence 2355789999999999999998889999888889999999999999999999985 79999999999999999999
Q ss_pred HHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCC---CcEE
Q 004149 632 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TPTI 708 (771)
Q Consensus 632 ~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P~L 708 (771)
+.++++|+.|+++|+.+|+.+|..+ ......+|++.|. .+...|...|-..++.++. -.+|
T Consensus 743 m~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnRLl 806 (867)
T KOG2281|consen 743 MGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNRLL 806 (867)
T ss_pred HHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCceEE
Confidence 9999999999999999999876533 1122345566663 3345566666666666653 4599
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++||--|.+|.+.+...+..+|-++|++.++++||++.|++..++.....-.+++.|+.+
T Consensus 807 LvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 807 LVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998887777889989876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=263.17 Aligned_cols=286 Identities=16% Similarity=0.205 Sum_probs=215.1
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeC
Q 004149 28 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 107 (771)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~S 107 (771)
..+|+.++..|.+. +++|+|+....+...+..++.||+++. +++++++||... .....|+||
T Consensus 132 D~~~~~~tg~~g~~-----------~~~iayv~~~~~~~~~~~~~~l~~~d~--dG~~~~~lt~~~-----~~~~sP~wS 193 (428)
T PRK01029 132 DTIHYALTGVPGIS-----------SGKIIFSLSTTNSDTELKQGELWSVDY--DGQNLRPLTQEH-----SLSITPTWM 193 (428)
T ss_pred HHHHHHHcCCCccc-----------cCEEEEEEeeCCcccccccceEEEEcC--CCCCceEcccCC-----CCcccceEc
Confidence 34667777777766 468899988777666666789999765 566788888765 456789999
Q ss_pred CCCCe--EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 108 PSGSK--LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 108 PdG~~--la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||++ ++|++.+. +..++|.++ .+++.++++...... ..++|||||++|||++...
T Consensus 194 PDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~---------- 252 (428)
T PRK01029 194 HIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY---------- 252 (428)
T ss_pred cCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCc----------cceEECCCCCEEEEEECCC----------
Confidence 99998 55688766 678999999 778888888765544 4799999999999987532
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE--EEccC---CceeeccCCCCC-CccceEEEecCCCCCccEE
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~---~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l 258 (771)
+..++|+ +++.+ ++.+++ +... .....++|||||+. |
T Consensus 253 -------------------------------g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~----L 295 (428)
T PRK01029 253 -------------------------------GNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR----L 295 (428)
T ss_pred -------------------------------CCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE----E
Confidence 1234555 45554 466777 4433 24468999999999 9
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+|+++.. ...+||+++++. .++..++|+........|.|||||++|+|.+...
T Consensus 296 af~s~~~------------g~~~ly~~~~~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 296 VFVSNKD------------GRPRIYIMQIDP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEEECCC------------CCceEEEEECcc---------------cccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 9998432 223799998731 2355778887766778999999999999998764
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
| ..+|+++|+.+++.++++.... ....+.|+|||+.|+|.+...+...||.+
T Consensus 349 ----g----~~~I~v~dl~~g~~~~Lt~~~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 349 ----G----VRQICVYDLATGRDYQLTTSPE--------------------NKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ----C----CcEEEEEECCCCCeEEccCCCC--------------------CccceEECCCCCEEEEEECCCCCceEEEE
Confidence 2 4689999999888766653310 23467899999999998887777899999
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecC
Q 004149 419 NVSSGELLRITPAESNFSWSLLTLDG 444 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~d~ 444 (771)
|+++++.++|+...+....+.|+|-.
T Consensus 401 dl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEeecCCCcccCceecCCC
Confidence 99999999998766655667887643
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=252.43 Aligned_cols=206 Identities=34% Similarity=0.583 Sum_probs=174.6
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHH
Q 004149 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 633 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 633 (771)
.|+...++|+++||+|+.+||||++++|..+.......++..+++|+.++++++++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35677889999999999999999999999999988888988999999999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEecCCccchhhhhcCCCCCcchh--hhhccCCCCCcCCCCCChhhHHHHhhcCccccccC--CCCcEEE
Q 004149 634 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIF 709 (771)
Q Consensus 634 a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Li 709 (771)
+.++|++|+++++.+|+.++..+....+. +.. ...++. .....+.+...+|+..+.+ +++|+||
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~~~~~~~~P~li 149 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLEYGD----------PWDNPEFYRELSPISPADNVQIKPPVLI 149 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHHHSS----------TTTSHHHHHHHHHGGGGGGCGGGSEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccccCc----------cchhhhhhhhhccccccccccCCCCEEE
Confidence 99999999999999999987766544333 111 011111 1234566777788888888 8899999
Q ss_pred EeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 710 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 710 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+||++|.+||+.++.+++++|++.|++++++++|+++|.+..++...++..++.+||+++||
T Consensus 150 ~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 150 IHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp EEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888888999999999999986
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-26 Score=235.67 Aligned_cols=345 Identities=17% Similarity=0.209 Sum_probs=264.3
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCC
Q 004149 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN 470 (771)
Q Consensus 392 ~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~ 470 (771)
..+.+.+| +|+...-.+...++...+...-..+.|..... .......+.+|+.+++..++.+.|+++|+.++.+.+
T Consensus 300 e~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e- 376 (648)
T COG1505 300 EQVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE- 376 (648)
T ss_pred eeeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-
Confidence 34555544 35554444434456666665544445543322 222223445788999999999999999999987654
Q ss_pred CceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC
Q 004149 471 KGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV 550 (771)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~ 550 (771)
.. .|-++..++ ....+++.+. ..++.||.+|+++++. ++.+.+ +.|++|+-+||....
T Consensus 377 Le-----~ik~~p~~F--------Da~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vs 434 (648)
T COG1505 377 LE-----VIREQPVQF--------DADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNIS 434 (648)
T ss_pred eh-----hhhhccCCc--------CccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccc
Confidence 11 111111111 1223333333 3456788999999998 765555 889999999999988
Q ss_pred CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHH
Q 004149 551 SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLT 630 (771)
Q Consensus 551 ~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a 630 (771)
..+.|......+.++|.+.++.|.||.++||..|++...+....+.++|+.++++.|++++...++++++.|.|.||.++
T Consensus 435 ltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLv 514 (648)
T COG1505 435 LTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLV 514 (648)
T ss_pred cCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEE
Confidence 88899988888899999999999999999999999988777777789999999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC-C-CcEE
Q 004149 631 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-K-TPTI 708 (771)
Q Consensus 631 ~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~-~P~L 708 (771)
..++.++|++|.|+|+..|++||..+........| +..|.....+++...+.++||+.+++.- + +|+|
T Consensus 515 g~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW----------~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~L 584 (648)
T COG1505 515 GAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSW----------IAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTL 584 (648)
T ss_pred EeeeccChhhhCceeeccchhhhhhhcccccchhh----------HhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeE
Confidence 99999999999999999999999877554433333 2334445567888899999999998763 3 7899
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh-HHHHHHHHHHHHHHhC
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYCK 771 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~wl~~~l~ 771 (771)
|..+.+|.+|.|.|++.|+.+|++.+.++-+.+--++||+-..+... ......+..||.+.|.
T Consensus 585 ITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 585 ITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred EEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999888888899987766554 4456678889998874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=250.12 Aligned_cols=280 Identities=16% Similarity=0.215 Sum_probs=210.0
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004149 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+..+|+.|+..+..-. ++|+|+....+ +.+.+.||+++. ++.+.+++|... ..+..|+
T Consensus 147 ~~d~i~~~ltg~~g~f~-----------~riayv~~~~~---~~~~~~l~~~d~--dg~~~~~lt~~~-----~~~~~p~ 205 (429)
T PRK03629 147 ASDEVFEKLTGIKGAFR-----------TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSPA 205 (429)
T ss_pred HHHHHHHHhcCCCCccC-----------CeEEEEEeeCC---CCcceeEEEEcC--CCCCCEEeecCC-----CceeeeE
Confidence 34457888877766552 57888876543 345788999776 455667787665 4578999
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||||++|||++... +..+++.++ .+++.++++...... ..+.|||||++|+|+....
T Consensus 206 wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~----------~~~~~SPDG~~La~~~~~~---------- 264 (429)
T PRK03629 206 WSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT---------- 264 (429)
T ss_pred EcCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc----------CCeEECCCCCEEEEEEcCC----------
Confidence 999999999998654 567788877 666666666554333 4789999999999975432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+
T Consensus 265 -------------------------------g~~~I~~~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~~ 307 (429)
T PRK03629 265 -------------------------------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSDQ 307 (429)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEc--cCCCCCcCceEECCCCCE----EEEEeCC
Confidence 235799999999999999 555556788999999999 9999843
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||.+|+ ++++.++++........|.|||||++|+|.+... |
T Consensus 308 ~------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~----g- 353 (429)
T PRK03629 308 A------------GRPQVYKVNI-----------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG----G- 353 (429)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC----C-
Confidence 2 1238999998 7788888887666677899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+|+++|+.+++.+.++... ....+.|||||+.|+|.+..++...|+.++++++.
T Consensus 354 ---~~~I~~~dl~~g~~~~Lt~~~---------------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 354 ---QQHIAKQDLATGGVQVLTDTF---------------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred ---CceEEEEECCCCCeEEeCCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 357999999887765544221 12367899999999999987777789999998777
Q ss_pred EEEecCCCCCceeeEEee
Q 004149 425 LLRITPAESNFSWSLLTL 442 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~ 442 (771)
.++|+...+....+.|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 888875444445566665
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-24 Score=224.79 Aligned_cols=536 Identities=17% Similarity=0.146 Sum_probs=338.4
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEE-e-cCCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFEL-W-SQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
....+|.+-.|.+...+...-++.- . .++. .+.+++......|.- .-..+.++.|||++.+||+-+..
T Consensus 80 vp~~~~~~~Yy~r~~~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~--f~~Lg~~~~s~D~~~la~s~D~~------- 150 (682)
T COG1770 80 VPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHD--FFSLGAASISPDHNLLAYSVDVL------- 150 (682)
T ss_pred CccccCCeeEEEEecCCCcceeEEeccCCCCCceeEeecchhccCccc--ceeeeeeeeCCCCceEEEEEecc-------
Confidence 3455777777777665433333333 2 3333 344444432222110 01235889999999999975543
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 261 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~ 261 (771)
+..+-.|.+.|+.+|+..... -......++|.+|++. +.|+
T Consensus 151 --------------------------------G~e~y~lr~kdL~tg~~~~d~---i~~~~~~~~Wa~d~~~----lfYt 191 (682)
T COG1770 151 --------------------------------GDEQYTLRFKDLATGEELPDE---ITNTSGSFAWAADGKT----LFYT 191 (682)
T ss_pred --------------------------------cccEEEEEEEecccccccchh---hcccccceEEecCCCe----EEEE
Confidence 224568899999999764431 1113567899999999 9998
Q ss_pred eecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC--ccccceeecCCCCEEEEEecCCC
Q 004149 262 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~--~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
..... .++..||...+... ...-+.+.+.. ....++.=|-..++|+...++.
T Consensus 192 ~~d~~----------~rp~kv~~h~~gt~---------------~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~- 245 (682)
T COG1770 192 RLDEN----------HRPDKVWRHRLGTP---------------GSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSH- 245 (682)
T ss_pred EEcCC----------CCcceEEEEecCCC---------------CCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCC-
Confidence 74332 25668888877210 12222222221 1122333344455554443221
Q ss_pred CCCCCccccccceeeecCCCCC--CCCccceeeE---------EecccccCCC-CCcccccCCC----------------
Q 004149 340 VDSGAHSATDSLHRIDWPTNGN--FSSLEKIVDV---------IPVVQCAEGD-CFPGLYSSSI---------------- 391 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~---------~~~~~~~~~~-~f~g~~~~~~---------------- 391 (771)
..+++++++.+..+. +.+......+ .-.+..+.++ .|. +++.-+
T Consensus 246 -------~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~-l~~ap~~~~~~~w~~~I~h~~~ 317 (682)
T COG1770 246 -------ITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFK-LVRAPVSADKSNWRELIPHRED 317 (682)
T ss_pred -------cceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceE-EEEccCCCChhcCeeeeccCCC
Confidence 234555555433322 1111110000 0000000000 110 111100
Q ss_pred -CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCce-eeEEe--ecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 392 -LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFS-WSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 392 -~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~-~~~~s--~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
.--.++--.+.|++.-...+...++..+.++++...|..+...+. +...+ .+.+.|.+..+++++|.+++=+++.+
T Consensus 318 ~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t 397 (682)
T COG1770 318 VRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMAT 397 (682)
T ss_pred ceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccC
Confidence 001122233456666667778889999998888888876554221 11222 36788999999999999999999876
Q ss_pred cCCCceeeeeccCCCCCC-CchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCC
Q 004149 468 KANKGTWSWLNVSSPISR-CPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGG 546 (771)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg 546 (771)
++ ...+ . ..+++. ++ +..+....|.+ ...+|..|...++.-++.+-.++.|++++.+|.
T Consensus 398 ~e-r~~L-k---qqeV~~g~d--------p~~Y~s~riwa-------~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGa 457 (682)
T COG1770 398 GE-RTLL-K---QQEVPGGFD--------PEDYVSRRIWA-------TADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGA 457 (682)
T ss_pred Cc-EEEE-E---eccCCCCCC--------hhHeEEEEEEE-------EcCCCcEeeEEEEEecccCCCCCCcEEEEEecc
Confidence 64 1110 0 111221 22 23343333321 235788888878877766677889999999998
Q ss_pred CCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChh
Q 004149 547 PHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHG 626 (771)
Q Consensus 547 ~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~G 626 (771)
.+......|+...--|..+||+......||.++.|+.|.+......-.+.+.|++++.++|++++..++++|+++|.|+|
T Consensus 458 YG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAG 537 (682)
T COG1770 458 YGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAG 537 (682)
T ss_pred ccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCch
Confidence 87777778887666788999999999999999999999987766556678999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCc-chhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCC-
Q 004149 627 GFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK- 704 (771)
Q Consensus 627 G~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~- 704 (771)
|+++..++...|++|+++|+..|++|......-..+|- -.....+|. ....+..+.+...||..++..-.
T Consensus 538 GmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGN--------P~d~e~y~yikSYSPYdNV~a~~Y 609 (682)
T COG1770 538 GMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGN--------PLDPEYYDYIKSYSPYDNVEAQPY 609 (682)
T ss_pred hHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCC--------cCCHHHHHHHhhcCchhccccCCC
Confidence 99999999999999999999999999754433222221 111122332 22456677788999999887744
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC---EEEEEeCCCCccCC
Q 004149 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVE---TKVIVFPNDVHGIE 750 (771)
Q Consensus 705 ~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~---~~~~~~~~~~H~~~ 750 (771)
+|+|++.|..|++|...+..++..+|+..+.. +-+..--++||+-.
T Consensus 610 P~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~ 658 (682)
T COG1770 610 PAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGA 658 (682)
T ss_pred CceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCC
Confidence 67999999999999999999999999987553 34444457899754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=242.68 Aligned_cols=279 Identities=13% Similarity=0.119 Sum_probs=205.7
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEe
Q 004149 27 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 106 (771)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~ 106 (771)
+..+|+.|+..+.+- ..+|+|+..... .+...+.||+++. ++.+.+++|... ..+..|+|
T Consensus 150 ~d~i~~~ltg~~g~f-----------~~~iafv~~~~~--~~~~~~~l~~~d~--dg~~~~~lt~~~-----~~v~~p~w 209 (435)
T PRK05137 150 ADAIYERLTGEKGYF-----------DTRIVYVAESGP--KNKRIKRLAIMDQ--DGANVRYLTDGS-----SLVLTPRF 209 (435)
T ss_pred HHHHHHHHhCCCCcC-----------CCeEEEEEeeCC--CCCcceEEEEECC--CCCCcEEEecCC-----CCeEeeEE
Confidence 445888888766443 247888865421 1233678999775 455777887664 56889999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCC
Q 004149 107 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 185 (771)
Q Consensus 107 SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~ 185 (771)
||||++|||++... +..++|.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 210 SpDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~----------- 267 (435)
T PRK05137 210 SPNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPDGRKVVMSLSQG----------- 267 (435)
T ss_pred CCCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc----------cCcEECCCCCEEEEEEecC-----------
Confidence 99999999998765 557888888 566666666544332 4889999999999975432
Q ss_pred CCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecC
Q 004149 186 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
+..+||++|+++++.+++ +........+.|||||++ |+|++.+.
T Consensus 268 ------------------------------g~~~Iy~~d~~~~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~~~ 311 (435)
T PRK05137 268 ------------------------------GNTDIYTMDLRSGTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESDRS 311 (435)
T ss_pred ------------------------------CCceEEEEECCCCceEEc--cCCCCccCceeEcCCCCE----EEEEECCC
Confidence 347899999999999999 555545667999999999 99988432
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCc
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 345 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~ 345 (771)
...+||++|+ ++++.++|+...+....|.|||||++|+|.+...
T Consensus 312 ------------g~~~Iy~~d~-----------------~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~------- 355 (435)
T PRK05137 312 ------------GSPQLYVMNA-----------------DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG------- 355 (435)
T ss_pred ------------CCCeEEEEEC-----------------CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC-------
Confidence 2248999998 7888889987766677899999999999998653
Q ss_pred cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe---eEEEEEECCC
Q 004149 346 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNVSS 422 (771)
Q Consensus 346 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~---~~l~~~d~~t 422 (771)
+..+|+++|+.++..+.++.+. ....+.|||||+.|+|.+...+. ..||.+++++
T Consensus 356 -~~~~i~~~d~~~~~~~~lt~~~---------------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 356 -GQFSIGVMKPDGSGERILTSGF---------------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred -CceEEEEEECCCCceEeccCCC---------------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 1467999998766554433211 13467899999999998875544 5899999998
Q ss_pred CcEEEecCCCCCceeeEEee
Q 004149 423 GELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 423 g~~~~l~~~~~~~~~~~~s~ 442 (771)
++.++++. .+....+.|+|
T Consensus 414 ~~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 414 RNEREVPT-PGDASDPAWSP 432 (435)
T ss_pred CceEEccC-CCCccCcccCC
Confidence 88888764 33345566664
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=238.63 Aligned_cols=279 Identities=16% Similarity=0.173 Sum_probs=205.0
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEe
Q 004149 27 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 106 (771)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~ 106 (771)
+..+|+.|+-.+.+.. .+|+|...... +...+.||+++. ++.+.++++... ..+..|+|
T Consensus 167 ~d~i~~~ltG~~g~f~-----------~riayv~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~~p~w 225 (448)
T PRK04792 167 SDIVYEKLTGERGAFL-----------TRIAYVVVNDK---DKYPYQLMIADY--DGYNEQMLLRSP-----EPLMSPAW 225 (448)
T ss_pred HHHHHHHhcCCCcccc-----------CEEEEEEeeCC---CCCceEEEEEeC--CCCCceEeecCC-----CcccCceE
Confidence 4457888877766653 35677665432 234567888664 455667777665 45788999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCC
Q 004149 107 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 185 (771)
Q Consensus 107 SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~ 185 (771)
||||++|+|++... +..++|.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 226 SPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~----------~~~~wSPDG~~La~~~~~~----------- 283 (448)
T PRK04792 226 SPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN----------GAPRFSPDGKKLALVLSKD----------- 283 (448)
T ss_pred CCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc----------CCeeECCCCCEEEEEEeCC-----------
Confidence 99999999998764 667899988 666666666543322 4789999999999975432
Q ss_pred CCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecC
Q 004149 186 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++...
T Consensus 284 ------------------------------g~~~Iy~~dl~tg~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~~~ 327 (448)
T PRK04792 284 ------------------------------GQPEIYVVDIATKALTRI--TRHRAIDTEPSWHPDGKS----LIFTSERG 327 (448)
T ss_pred ------------------------------CCeEEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCC
Confidence 346899999999999998 454445678999999999 99987432
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCc
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 345 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~ 345 (771)
...+||.+|+ ++++.++|+.......+|.|||||++|+|.+...
T Consensus 328 ------------g~~~Iy~~dl-----------------~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~------- 371 (448)
T PRK04792 328 ------------GKPQIYRVNL-----------------ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN------- 371 (448)
T ss_pred ------------CCceEEEEEC-----------------CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC-------
Confidence 2248999998 7788888875544556799999999999987653
Q ss_pred cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 004149 346 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 425 (771)
Q Consensus 346 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 425 (771)
+..+|+++|+.+++.+.++... ....+.|+|||+.|+|++..++...||.++.+++..
T Consensus 372 -g~~~I~~~dl~~g~~~~lt~~~---------------------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 372 -GKFNIARQDLETGAMQVLTSTR---------------------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred -CceEEEEEECCCCCeEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 2467999999887765543321 112568999999999999888888899999977777
Q ss_pred EEecCCCCCceeeEEee
Q 004149 426 LRITPAESNFSWSLLTL 442 (771)
Q Consensus 426 ~~l~~~~~~~~~~~~s~ 442 (771)
++++...+....+.|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 77766545455566665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=237.32 Aligned_cols=281 Identities=15% Similarity=0.119 Sum_probs=204.8
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004149 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+..+|+.++..+.+- +.+|+|+.... ..+...+.||+++. ++.+.++++... ..+..|+
T Consensus 151 ~~d~i~~~~tg~~g~f-----------~~~ia~v~~~~--~~~~~~~~l~i~D~--~g~~~~~lt~~~-----~~v~~p~ 210 (433)
T PRK04922 151 IADAIYEKITGVPGAF-----------WTRIAYVTVSG--AGGAMRYALQVADS--DGYNPQTILRSA-----EPILSPA 210 (433)
T ss_pred HHHHHHHHHcCCCCcc-----------cceEEEEEEeC--CCCCceEEEEEECC--CCCCceEeecCC-----Ccccccc
Confidence 3455777777655432 24678876543 22335678888775 455677787664 4578899
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||||++|||++... +..+++.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 211 wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~----------~~~~~SpDG~~l~~~~s~~---------- 269 (433)
T PRK04922 211 WSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN----------GAPSFSPDGRRLALTLSRD---------- 269 (433)
T ss_pred CCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc----------cCceECCCCCEEEEEEeCC----------
Confidence 999999999998754 567888888 566666665543222 4789999999999975432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+++.+++ +........+.|||||++ |+|++.+
T Consensus 270 -------------------------------g~~~Iy~~d~~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd~ 312 (433)
T PRK04922 270 -------------------------------GNPEIYVMDLGSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSDR 312 (433)
T ss_pred -------------------------------CCceEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECC
Confidence 236899999999999988 444444567899999999 9999843
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
.+ ..+||.+++ .+++.++++........|.|||||++|+|.+...
T Consensus 313 ~g------------~~~iy~~dl-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~------ 357 (433)
T PRK04922 313 GG------------RPQIYRVAA-----------------SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG------ 357 (433)
T ss_pred CC------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC------
Confidence 22 237999998 7788888886555566899999999999987643
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
+..+|+++|+.+++.+.++.+. ....+.|+|||+.|+|.+...+...||.++++++.
T Consensus 358 --~~~~I~v~d~~~g~~~~Lt~~~---------------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 358 --GQYRIAVMDLSTGSVRTLTPGS---------------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred --CceeEEEEECCCCCeEECCCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 2358999999887766554321 12356899999999999988788899999998877
Q ss_pred EEEecCCCCCceeeEEee
Q 004149 425 LLRITPAESNFSWSLLTL 442 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~ 442 (771)
.++++...+....+.|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 788875544444555554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=235.45 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=200.8
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004149 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+.++|+.++..+..-. .+|+|.... ...+.||.++. ++...++++... ..+..|
T Consensus 146 ~~~d~i~~~~tg~~g~f~-----------~~iayv~~~------~~~~~L~~~D~--dG~~~~~l~~~~-----~~v~~p 201 (427)
T PRK02889 146 RIADYIYEKLTGERGVFS-----------TRIAYVIKT------GNRYQLQISDA--DGQNAQSALSSP-----EPIISP 201 (427)
T ss_pred HHHHHHHHHhcCCCcccc-----------cEEEEEEcc------CCccEEEEECC--CCCCceEeccCC-----CCcccc
Confidence 334556766655543321 368887632 23568888765 455666776554 457889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..++|..+ .+++..+++...... ..+.|||||++|+|.....
T Consensus 202 ~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~--------- 261 (427)
T PRK02889 202 AWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSN----------SAPAWSPDGRTLAVALSRD--------- 261 (427)
T ss_pred eEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCc----------cceEECCCCCEEEEEEccC---------
Confidence 9999999999998754 567788888 566666665543322 4899999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004149 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+.+++.+++ +........+.|||||++ |+|+++
T Consensus 262 --------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~ 303 (427)
T PRK02889 262 --------------------------------GNSQIYTVNADGSGLRRL--TQSSGIDTEPFFSPDGRS----IYFTSD 303 (427)
T ss_pred --------------------------------CCceEEEEECCCCCcEEC--CCCCCCCcCeEEcCCCCE----EEEEec
Confidence 347899999999998888 454445667899999999 999874
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004149 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+++ .++..++++........|.|||||++|+|.+... |
T Consensus 304 ~~g------------~~~Iy~~~~-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~----g 350 (427)
T PRK02889 304 RGG------------APQIYRMPA-----------------SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG----G 350 (427)
T ss_pred CCC------------CcEEEEEEC-----------------CCCceEEEecCCCCcCceEECCCCCEEEEEEccC----C
Confidence 321 237999998 6777777775555566899999999999998764 2
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004149 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
..+|+++|+.+++.++++... ....+.|+|||+.|+|.+..++...|+.++++++
T Consensus 351 ----~~~I~v~d~~~g~~~~lt~~~---------------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 351 ----AFKLYVQDLATGQVTALTDTT---------------------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred ----cEEEEEEECCCCCeEEccCCC---------------------CccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 357999999887765554321 1246789999999999998888888999999665
Q ss_pred cEEEecCCCCCceeeEEee
Q 004149 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..+++....+....+.|+|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 5666665445455566665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=231.68 Aligned_cols=255 Identities=9% Similarity=0.008 Sum_probs=187.0
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cC
Q 004149 55 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQ 132 (771)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~~~-~~ 132 (771)
+++|...... .+.+.||+.|. ++.+.++++.+. ....|+|||||++ ++|++..+ +..++|.++ .+
T Consensus 156 r~~~v~~~~~----~~~~~l~~~d~--dg~~~~~~~~~~------~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~t 222 (419)
T PRK04043 156 RKVVFSKYTG----PKKSNIVLADY--TLTYQKVIVKGG------LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYT 222 (419)
T ss_pred eEEEEEEccC----CCcceEEEECC--CCCceeEEccCC------CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCC
Confidence 5666554211 23678999765 455666676552 3668999999997 66666653 567899999 67
Q ss_pred CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCccc
Q 004149 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 212 (771)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 212 (771)
++.++++...... ..+.|||||++|+|.....
T Consensus 223 g~~~~lt~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 254 (419)
T PRK04043 223 GKKEKIASSQGML----------VVSDVSKDGSKLLLTMAPK-------------------------------------- 254 (419)
T ss_pred CcEEEEecCCCcE----------EeeEECCCCCEEEEEEccC--------------------------------------
Confidence 7777777643322 4688999999999986432
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
++.+||++|+++++.++| +........+.|||||++ |+|++++. ...+||.+|+
T Consensus 255 ---g~~~Iy~~dl~~g~~~~L--T~~~~~d~~p~~SPDG~~----I~F~Sdr~------------g~~~Iy~~dl----- 308 (419)
T PRK04043 255 ---GQPDIYLYDTNTKTLTQI--TNYPGIDVNGNFVEDDKR----IVFVSDRL------------GYPNIFMKKL----- 308 (419)
T ss_pred ---CCcEEEEEECCCCcEEEc--ccCCCccCccEECCCCCE----EEEEECCC------------CCceEEEEEC-----
Confidence 347999999999999999 554444557899999999 99998542 2248999999
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004149 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++++.++++.... ..+.|||||++|+|.........+ ....+|+++|+++++.++++...
T Consensus 309 ------------~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~--~~~~~I~v~d~~~g~~~~LT~~~---- 368 (419)
T PRK04043 309 ------------NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFG--KNTFNLYLISTNSDYIRRLTANG---- 368 (419)
T ss_pred ------------CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccC--CCCcEEEEEECCCCCeEECCCCC----
Confidence 8888888886533 246999999999999976421100 12368999999998877765432
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004149 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
....+.|||||+.|+|.+..++...|+.+++++....++....+
T Consensus 369 -----------------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 369 -----------------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred -----------------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 12357899999999999888788889999998777777765444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=232.60 Aligned_cols=281 Identities=16% Similarity=0.183 Sum_probs=203.5
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004149 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+..+|+.|+..+.. | .++|+|.....+. +...+.|++++. ++.+.++++... ..+..|+
T Consensus 146 i~d~i~~~ltg~~g~-----f------~~~ia~v~~~~~~--~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~ 205 (430)
T PRK00178 146 ISDQSFEKLTGIKGA-----F------STRILYVTAERFS--VNTRYTLQRSDY--DGARAVTLLQSR-----EPILSPR 205 (430)
T ss_pred HHHHHHHHHhCCCcc-----c------eeeEEEEEeeCCC--CCcceEEEEECC--CCCCceEEecCC-----Cceeeee
Confidence 345578888766543 2 2468887654432 224557888665 445666776554 4578899
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||||++|||++... +..++|.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 206 wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~----------~~~~~SpDG~~la~~~~~~---------- 264 (430)
T PRK00178 206 WSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLN----------GAPAWSPDGSKLAFVLSKD---------- 264 (430)
T ss_pred ECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCc----------CCeEECCCCCEEEEEEccC----------
Confidence 999999999998765 567898888 666666665443222 4789999999999975432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+
T Consensus 265 -------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~~spDg~~----i~f~s~~ 307 (430)
T PRK00178 265 -------------------------------GNPEIYVMDLASRQLSRV--TNHPAIDTEPFWGKDGRT----LYFTSDR 307 (430)
T ss_pred -------------------------------CCceEEEEECCCCCeEEc--ccCCCCcCCeEECCCCCE----EEEEECC
Confidence 236899999999999988 555445677899999999 9999743
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||.+++ .+++.++++........|.|||||++|+|..... |
T Consensus 308 ~------------g~~~iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~----~- 353 (430)
T PRK00178 308 G------------GKPQIYKVNV-----------------NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD----G- 353 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCEEEeecCCCCccceEECCCCCEEEEEEccC----C-
Confidence 2 2248999998 7788888876555566799999999999998653 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+|+++|+.+++.+.++... ....+.|||||+.|+|++...+...||.++++++.
T Consensus 354 ---~~~l~~~dl~tg~~~~lt~~~---------------------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 354 ---NFHVAAQDLQRGSVRILTDTS---------------------LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred ---ceEEEEEECCCCCEEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 457999999988765554321 11256899999999999988888889999997766
Q ss_pred EEEecCCCCCceeeEEee
Q 004149 425 LLRITPAESNFSWSLLTL 442 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~ 442 (771)
.+++....+....+.|++
T Consensus 410 ~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 410 RLPLPTAQGEVREPSWSP 427 (430)
T ss_pred eEECcCCCCCcCCCccCC
Confidence 667765444444555654
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-22 Score=208.59 Aligned_cols=302 Identities=20% Similarity=0.244 Sum_probs=225.5
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceE
Q 004149 442 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPF 521 (771)
Q Consensus 442 ~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l 521 (771)
-+...+.|..+++-+|+.+|.+|+..+.-... ...+++..++.+ ....+.+..+ .+.+.||..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~-vf~e~~~~lpg~--------~~s~y~~~r~-------~~~SkDGt~V 454 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPS-VFREITVVLPGF--------DASDYVVERI-------EVSSKDGTKV 454 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCc-ceeeeccccCcc--------cccceEEEEE-------EEecCCCCcc
Confidence 35678999999999999999999987641111 112333222211 1222333333 3456677777
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
...++..+..+-.++.|++++.||+.+......|...-..|..+|++....|.||.|++|..|++......-.+.++|++
T Consensus 455 PM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfi 534 (712)
T KOG2237|consen 455 PMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFI 534 (712)
T ss_pred ceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHH
Confidence 77788776666677899999999988877666776655556679999999999999999999998877666677899999
Q ss_pred HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchh-hhhccCCCCCcCC
Q 004149 602 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY-VESYGSKGKDSFT 680 (771)
Q Consensus 602 ~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 680 (771)
+++++|+++++..+++.++.|.|.||.++..++.++|++|+|+|+..|+.|+......+..+-|.. .+.++
T Consensus 535 a~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g-------- 606 (712)
T KOG2237|consen 535 ACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWG-------- 606 (712)
T ss_pred HHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccC--------
Confidence 999999999999999999999999999999999999999999999999999987766666665531 12222
Q ss_pred CCCChhhHHHHhhcCccccccCCC-----CcEEEEeeCCCCccCcHHHHHHHHHHHhC-------CCCEEEEEeCCCCcc
Q 004149 681 ESPSVEDLTRFHSKSPISHISKVK-----TPTIFLLGAQDLRVPVSNGLQYARALREK-------GVETKVIVFPNDVHG 748 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i~-----~P~Lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~ 748 (771)
.+++...+...+|+..+++++ +-+|+..+.+|.+|++.++..+.+.|+.. ..++-+.+..++||+
T Consensus 607 ---~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~ 683 (712)
T KOG2237|consen 607 ---NPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHG 683 (712)
T ss_pred ---ChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccc
Confidence 234556666666766666554 34899999999999999999999998864 135778899999998
Q ss_pred CCCCCC-hHHHHHHHHHHHHHHh
Q 004149 749 IERPQS-DFESFLNIGLWFKKYC 770 (771)
Q Consensus 749 ~~~~~~-~~~~~~~i~~wl~~~l 770 (771)
...+.. ..+-.....+||.+.+
T Consensus 684 ~~~~~~k~~~E~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 684 AEKPRFKQIEEAAFRYAFLAKML 706 (712)
T ss_pred cCCchHHHHHHHHHHHHHHHHHh
Confidence 754322 2223344666776654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-23 Score=222.13 Aligned_cols=273 Identities=13% Similarity=0.141 Sum_probs=191.7
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004149 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+.++|+.|+..+.+- +++|+|+....+ +.+.+.||+++.+ +.+.++++... ..+..|+
T Consensus 152 ~~d~i~~~ltg~~g~f-----------~~ria~v~~~~~---~~~~~~i~i~d~d--g~~~~~lt~~~-----~~v~~p~ 210 (429)
T PRK01742 152 VSDEVFEKLTAIRGAF-----------RTRIAYVVQKNG---GSQPYEVRVADYD--GFNQFIVNRSS-----QPLMSPA 210 (429)
T ss_pred HHHHHHHHHcCCCCcc-----------CCEEEEEEEEcC---CCceEEEEEECCC--CCCceEeccCC-----Cccccce
Confidence 3445778887766654 357888876544 2345788987763 44556666544 4578899
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||||++|||++..+ +..+++.++ .+++.+.+....... ..++|||||++|+|.....
T Consensus 211 wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~----------~~~~wSPDG~~La~~~~~~---------- 269 (429)
T PRK01742 211 WSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN----------GAPAFSPDGSRLAFASSKD---------- 269 (429)
T ss_pred EcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc----------CceeECCCCCEEEEEEecC----------
Confidence 999999999998754 556788777 555555555443322 4789999999999975422
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+
T Consensus 270 -------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~~ 312 (429)
T PRK01742 270 -------------------------------GVLNIYVMGANGGTPSQL--TSGAGNNTEPSWSPDGQS----ILFTSDR 312 (429)
T ss_pred -------------------------------CcEEEEEEECCCCCeEee--ccCCCCcCCEEECCCCCE----EEEEECC
Confidence 235799999999999998 555556778999999999 9999743
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||.++. .++..+.++. .. ..+.|||||++|+|.+..
T Consensus 313 ~------------g~~~I~~~~~-----------------~~~~~~~l~~-~~--~~~~~SpDG~~ia~~~~~------- 353 (429)
T PRK01742 313 S------------GSPQVYRMSA-----------------SGGGASLVGG-RG--YSAQISADGKTLVMINGD------- 353 (429)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEecC-CC--CCccCCCCCCEEEEEcCC-------
Confidence 2 2238999997 5566666643 22 468999999999998642
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
.|+++|+.++....++... ....+.|+|||+.|++.+..++...++.++.+++.
T Consensus 354 -----~i~~~Dl~~g~~~~lt~~~---------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 354 -----NVVKQDLTSGSTEVLSSTF---------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred -----CEEEEECCCCCeEEecCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 3788998887654332211 12357899999999988876555567777877777
Q ss_pred EEEecCCCCCceeeEEee
Q 004149 425 LLRITPAESNFSWSLLTL 442 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~ 442 (771)
.++|....+....+.|+|
T Consensus 408 ~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSP 425 (429)
T ss_pred eEEccCCCCCCCCcccCC
Confidence 777865545455566765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=223.60 Aligned_cols=245 Identities=13% Similarity=0.121 Sum_probs=186.9
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 109 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
-..+|||+++..++ ..++|.++ ++...++++...... ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 35689999876532 45788777 566666676543333 5899999999999986542
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+|+.+++ +........+.|||||+. |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEe--ecCCCcccCcEECCCCCE----EEEEEec
Confidence 347999999999998888 444445668899999999 9998632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. .+.+||++|+ ++++.++|+.......+|.|||||++|+|.+.+. |
T Consensus 267 ~------------g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~----g- 312 (435)
T PRK05137 267 G------------GNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS----G- 312 (435)
T ss_pred C------------CCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC----C-
Confidence 2 3358999998 8888999998877788899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|||||+.|++.....+...|+.++++++.
T Consensus 313 ---~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 313 ---SPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred ---CCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 468999998877665554221 023457899999999998866666789999998888
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCC--CeEEEEEeccc
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 468 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p--~~l~~~~~~~~ 468 (771)
.+.++... ....+.|+|||+.|+++....... ..||+.++.++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 77776543 345678999999999998766553 57999887544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=217.02 Aligned_cols=239 Identities=11% Similarity=0.058 Sum_probs=180.5
Q ss_pred CeEEEEecC-CCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe-EEEEecCCCCCCCCccCCCCC
Q 004149 111 SKLLVVRNP-ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~ 187 (771)
.++||+... .....+++.++ ++.+.+.++... .. ..+.|||||++ ++|.+...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~---------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LN---------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC--Ce---------EeEEECCCCCcEEEEEEccC-------------
Confidence 467777653 32367899888 555555555532 21 48999999997 66665432
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004149 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+...
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~--- 253 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAP--- 253 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEcc---
Confidence 247999999999999999 444444567899999999 9998742
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
+.+.+||++|+ .+++.++||........|.|||||++|+|.+++. |
T Consensus 254 ---------~g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g---- 299 (419)
T PRK04043 254 ---------KGQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL----G---- 299 (419)
T ss_pred ---------CCCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC----C----
Confidence 23458999998 7888999998777677899999999999999874 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC------CeeEEEEEECC
Q 004149 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 421 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~------~~~~l~~~d~~ 421 (771)
..+||++|+.+++.++++... .....|||||+.|+|..... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999988876654321 11247999999999988654 33689999999
Q ss_pred CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 422 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 422 tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+|+.++|+.... ...+.|+|||+.|+|+... ..-..|+..++...
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 3458999999999999765 44456888887543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=218.98 Aligned_cols=251 Identities=15% Similarity=0.164 Sum_probs=181.7
Q ss_pred EEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe--EEEEecCCC
Q 004149 104 VVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL--IAYVAEEPS 175 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~--la~~~~~~~ 175 (771)
+.++ +++|||+....+ ...++|+++ ++++.++++...... ..|.|||||++ ++|++...
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~- 208 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL- 208 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC-
Confidence 4555 999999987542 145799998 777788887643333 48999999998 55576543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+.++||++++++|+.+++ +........+.|||||++
T Consensus 209 ----------------------------------------g~~~I~~~~l~~g~~~~l--t~~~g~~~~p~wSPDG~~-- 244 (428)
T PRK01029 209 ----------------------------------------GVPKIFLGSLENPAGKKI--LALQGNQLMPTFSPRKKL-- 244 (428)
T ss_pred ----------------------------------------CCceEEEEECCCCCceEe--ecCCCCccceEECCCCCE--
Confidence 347999999999999998 444445667999999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEE--ecccccchhhhhhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLV 332 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~ 332 (771)
|+|++...+ ..+||.. +++. ..++..++++... .....|+|||||++|+
T Consensus 245 --Laf~s~~~g------------~~di~~~~~~~~~--------------g~~g~~~~lt~~~~~~~~~p~wSPDG~~La 296 (428)
T PRK01029 245 --LAFISDRYG------------NPDLFIQSFSLET--------------GAIGKPRRLLNEAFGTQGNPSFSPDGTRLV 296 (428)
T ss_pred --EEEEECCCC------------CcceeEEEeeccc--------------CCCCcceEeecCCCCCcCCeEECCCCCEEE
Confidence 999984322 2256664 4410 0135667888654 3467899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCC--CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|.+.+. | ..+||++++.+.+ .++++... .....+.|||||+.|+|.....
T Consensus 297 f~s~~~----g----~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 297 FVSNKD----G----RPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEECCC----C----CceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcCC
Confidence 998764 2 4579999885422 22232111 0234678999999999988777
Q ss_pred CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 411 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+..+|+.+|+++|+.++++........+.|++||+.|++..... ....||+.++.++
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g 405 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITK 405 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCC
Confidence 77789999999999999987654456688999999999987654 3467998887654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=214.74 Aligned_cols=241 Identities=17% Similarity=0.164 Sum_probs=181.3
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC
Q 004149 111 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 187 (771)
++|||+....++ ..++++++ ++.+.++++...... ..++|||||++|+|++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999875322 45677777 555666776643233 5899999999999986432
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004149 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+..+||++|+.+|+.+.+ +........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l--~~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEc--cCCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 347899999999998888 433334567999999999 99986322
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
...+||++|+ ++++.++++.....+..|.|||||++|+|.+.+. |
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~----g---- 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA----G---- 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC----C----
Confidence 2347999998 7888999998777788999999999999999764 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
..+||++|+.+++.++++... .....+.|||||+.|++.....+...||.+|+++++.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 468999999887654443211 012457899999999998877777789999999999999
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 428 l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
|+.... ...+.|+|||+.|++...... ...+++.++..
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G 407 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDG 407 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCC
Confidence 986432 345789999999999887443 34577777643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-22 Score=213.35 Aligned_cols=239 Identities=17% Similarity=0.189 Sum_probs=179.4
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004149 111 SKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 111 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
.+|||+.... +..+++.++ ++...++++...... ..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 5799998543 556788777 444556665443333 5899999999999986532
Q ss_pred CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee
Q 004149 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 269 (771)
Q Consensus 190 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~ 269 (771)
..++||++|+.+|+.+++ +........++|||||+. |+|+...
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~----- 260 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVV--ANFKGSNSAPAWSPDGRT----LAVALSR----- 260 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEEcc-----
Confidence 347899999999998888 333344568999999999 9997632
Q ss_pred eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004149 270 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 270 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
+...+||.+|+ .++..++|+.......+|.|||||++|+|.+++. | ..
T Consensus 261 -------~g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~----g----~~ 308 (427)
T PRK02889 261 -------DGNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG----G----AP 308 (427)
T ss_pred -------CCCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC----C----Cc
Confidence 23358999998 7778889988776678899999999999998764 2 46
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+||.+++.++..++++... . ....+.|||||+.|++.+...+..+|+.+|+.+++.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG-----------------S---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC-----------------C---CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7999998776544332110 0 1235789999999999887666778999999999999888
Q ss_pred CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 430 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 430 ~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.... ...+.|++||+.|++....... ..+++.++.
T Consensus 369 ~~~~-~~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~ 403 (427)
T PRK02889 369 DTTR-DESPSFAPNGRYILYATQQGGR-SVLAAVSSD 403 (427)
T ss_pred CCCC-ccCceECCCCCEEEEEEecCCC-EEEEEEECC
Confidence 6533 3567999999999999876654 568877763
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=210.19 Aligned_cols=241 Identities=16% Similarity=0.189 Sum_probs=178.9
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC
Q 004149 110 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 186 (771)
Q Consensus 110 G~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 186 (771)
..+|||+....+. ..+++.++ ++.+.+.++...... ..+.|||||++|+|++...
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------ 239 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------ 239 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC------------
Confidence 3578888765422 34666666 455566666554333 5899999999999986532
Q ss_pred CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 004149 187 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
+..+||++|+.+++.+.+ +........+.|||||+. |+|+....
T Consensus 240 -----------------------------g~~~L~~~dl~tg~~~~l--t~~~g~~~~~~wSPDG~~----La~~~~~~- 283 (448)
T PRK04792 240 -----------------------------RKAEIFVQDIYTQVREKV--TSFPGINGAPRFSPDGKK----LALVLSKD- 283 (448)
T ss_pred -----------------------------CCcEEEEEECCCCCeEEe--cCCCCCcCCeeECCCCCE----EEEEEeCC-
Confidence 237899999999998888 333334557899999999 99986432
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004149 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
...+||++|+ ++++.++|+........|.|||||++|+|.+.+. |
T Consensus 284 -----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g--- 328 (448)
T PRK04792 284 -----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG----G--- 328 (448)
T ss_pred -----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC----C---
Confidence 2348999998 8888899988766778899999999999998764 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+||++|+.+++.++++... . ....++|||||+.|+|.....+..+||.+|+++++.+
T Consensus 329 -~~~Iy~~dl~~g~~~~Lt~~g-----------------~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 329 -KPQIYRVNLASGKVSRLTFEG-----------------E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred -CceEEEEECCCCCEEEEecCC-----------------C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 468999999887755443111 0 1234689999999999887677778999999999998
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.++....+ ..+.|+|||+.|++..... ....||+.+..
T Consensus 388 ~lt~~~~d-~~ps~spdG~~I~~~~~~~-g~~~l~~~~~~ 425 (448)
T PRK04792 388 VLTSTRLD-ESPSVAPNGTMVIYSTTYQ-GKQVLAAVSID 425 (448)
T ss_pred EccCCCCC-CCceECCCCCEEEEEEecC-CceEEEEEECC
Confidence 88765332 3468999999999888654 34568887764
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=192.10 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=152.3
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKV 592 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~-~~~g~~~~~~~~~~~ 592 (771)
...+|..|.||+..|++. ..++.++||++||..... ..+...+.+|+++||.|+.+|+||. |++++.+....
T Consensus 15 ~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t---- 87 (307)
T PRK13604 15 CLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT---- 87 (307)
T ss_pred EcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc----
Confidence 455799999999999742 346678999999966542 3477889999999999999999875 55544432111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
......|+.++++|+.++. .++|+|+||||||.+++.+|.. + .++++|+.+|+.++.......-...+.......
T Consensus 88 ~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~~ 162 (307)
T PRK13604 88 MSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSLPIDE 162 (307)
T ss_pred ccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccCcccc
Confidence 1123789999999998863 4689999999999998766664 2 489999999999865333210000000000000
Q ss_pred CCCCCcCCCCCCh--hhHHH------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 673 SKGKDSFTESPSV--EDLTR------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 673 ~~~~~~~~~~~~~--~~~~~------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
....-.+.+.... ..... ....+|+..+.+++.|+|++||+.|..||++.+++++++++. .+.+++.+||
T Consensus 163 lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~G 240 (307)
T PRK13604 163 LPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIG 240 (307)
T ss_pred cccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCC
Confidence 0000001011110 11111 113456677888899999999999999999999999998764 3589999999
Q ss_pred CCccCC
Q 004149 745 DVHGIE 750 (771)
Q Consensus 745 ~~H~~~ 750 (771)
++|.+.
T Consensus 241 a~H~l~ 246 (307)
T PRK13604 241 SSHDLG 246 (307)
T ss_pred CccccC
Confidence 999986
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=207.70 Aligned_cols=243 Identities=14% Similarity=0.133 Sum_probs=179.8
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 109 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
=+++|||++...++ ..++++++ ++...++++...... ..+.|||||++|+|++...
T Consensus 166 f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~---------- 225 (433)
T PRK04922 166 FWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER---------- 225 (433)
T ss_pred ccceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC----------
Confidence 35679998765322 23466555 455566666543333 5899999999999986432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+++.+.+ +........+.|||||+. |+|+...
T Consensus 226 -------------------------------~~~~l~~~dl~~g~~~~l--~~~~g~~~~~~~SpDG~~----l~~~~s~ 268 (433)
T PRK04922 226 -------------------------------GRSAIYVQDLATGQRELV--ASFRGINGAPSFSPDGRR----LALTLSR 268 (433)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEe--ccCCCCccCceECCCCCE----EEEEEeC
Confidence 347899999999998888 333334557899999999 9998632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. .+.+||++|+ .+++.++++.......+|.|||||++|+|.+.+. |
T Consensus 269 ~------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g- 314 (433)
T PRK04922 269 D------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----G- 314 (433)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC----C-
Confidence 2 3348999998 7888899987766677899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... . ....++|||||+.|++.....+..+|+.+|+.+++
T Consensus 315 ---~~~iy~~dl~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 315 ---RPQIYRVAASGGSAERLTFQG-----------------N---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ---CceEEEEECCCCCeEEeecCC-----------------C---CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 358999999887655443211 0 12357899999999998766666789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
.+.++.... ...+.|++||+.|++..... .-..||+.++..
T Consensus 372 ~~~Lt~~~~-~~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 372 VRTLTPGSL-DESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred eEECCCCCC-CCCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 998886543 34578999999999988763 345788887643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=208.23 Aligned_cols=242 Identities=15% Similarity=0.174 Sum_probs=179.4
Q ss_pred CCCeEEEEecCCC---CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 109 SGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
..++|||++.... +..+++.++ ++++.+.++...... ..++|||||++|+|++...
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 4567999876432 233566666 455555665543332 5899999999999986532
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
...+||++|+.+|+.+.+ +........+.|||||++ |+|+...
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l--~~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQI--TNFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEc--cCCCCCcCCeEECCCCCE----EEEEEcc
Confidence 347899999999999888 433334557999999999 9998743
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||++|+ .+++.++|+.......+|.|||||++|+|.+.+. |
T Consensus 264 ~------------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g- 309 (430)
T PRK00178 264 D------------GNPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----G- 309 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC----C-
Confidence 2 2348999998 7888889988777788899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|||||+.|+|.....+...|+.+|+.+++
T Consensus 310 ---~~~iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 310 ---KPQIYKVNVNGGRAERVTFVG--------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ---CceEEEEECCCCCEEEeecCC--------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 468999999887754443111 012356899999999998876667789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+.|+..... ..+.|++||+.++++...... ..|++.++.
T Consensus 367 ~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~-~~l~~~~~~ 406 (430)
T PRK00178 367 VRILTDTSLD-ESPSVAPNGTMLIYATRQQGR-GVLMLVSIN 406 (430)
T ss_pred EEEccCCCCC-CCceECCCCCEEEEEEecCCc-eEEEEEECC
Confidence 9999875433 357899999999998865443 457877764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=202.21 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=183.0
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-c
Q 004149 53 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S 131 (771)
Q Consensus 53 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~ 131 (771)
+.+++|..... +...+.||+++. .+.+.++++... .....|+|||||++|||+.... +..+++.++ .
T Consensus 155 ~~~~~~~~~~~----~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSG----KSRRYELQVADY--DGANPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeC----CCCcceEEEEcC--CCCCCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECC
Confidence 45677775433 235678888765 344667776553 3477899999999999987654 556788777 5
Q ss_pred CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004149 132 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
++....+....... ..++|||||+.|+|.....
T Consensus 223 ~g~~~~~~~~~~~~----------~~~~~spDg~~l~~~~~~~------------------------------------- 255 (417)
T TIGR02800 223 TGQREKVASFPGMN----------GAPAFSPDGSKLAVSLSKD------------------------------------- 255 (417)
T ss_pred CCCEEEeecCCCCc----------cceEECCCCCEEEEEECCC-------------------------------------
Confidence 55555554433222 4789999999999975432
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
...+||++|+.+++.+.+ +........+.|+|||++ |+|++.+.. ..+||.+++
T Consensus 256 ----~~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~---- 309 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRL--TNGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA---- 309 (417)
T ss_pred ----CCccEEEEECCCCCEEEC--CCCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC----
Confidence 336899999999998888 444444567899999999 999874321 237999998
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.+++.++++........|.|||||++|+|..... ...+|+++|+.++..+.++...
T Consensus 310 -------------~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~--- 365 (417)
T TIGR02800 310 -------------DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG--- 365 (417)
T ss_pred -------------CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC---
Confidence 7777888887666778899999999999998753 2467999999876544333211
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
....+.|+|||+.|++.+..++...++.++.+++..+.++...+
T Consensus 366 ------------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 ------------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12356899999999999988777788888876666666765433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=203.31 Aligned_cols=329 Identities=16% Similarity=0.162 Sum_probs=213.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||+.+.+..+....-+......++++++... +.++++.. ......+.|||||++|||+++.+ +|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~~~n-----ly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTPP-----PPKLQDAKWSPDGKYIAFVRDNN-----LYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS-E-----ETTBSEEEE-SSSTEEEEEETTE-----EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcCC-----ccccccceeecCCCeeEEEecCc-----eEEE
Confidence 689999999888776666667788899887443 44555433 24578999999999999998765 8888
Q ss_pred e-cCCcceEEEecC-----CcccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC-
Q 004149 130 W-SQSQLEKEFHVP-----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK- 199 (771)
Q Consensus 130 ~-~~~~~~~~~~~~-----~~~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 199 (771)
. .++..+++|.-. .+..+.+|.++ ....+.|||||++|||...+......+.......... .+.
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~ 142 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPE 142 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-E
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCc
Confidence 7 566667777532 12233444443 3358899999999999986654332111110000000 000
Q ss_pred -CcccccCCcCcccCCccCceEEEEEccCCceeeccCC----CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004149 200 -GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 200 -~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~----~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
..+.| |.-|.. .....|+++|+++++...+... +.+..+..+.|++|++. |++......
T Consensus 143 ~~~~~Y-Pk~G~~---np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~-------- 206 (353)
T PF00930_consen 143 VESIRY-PKAGDP---NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRD-------- 206 (353)
T ss_dssp EEEEE---BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETT--------
T ss_pred cccccc-CCCCCc---CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccC--------
Confidence 01111 111211 1345899999999987665311 23456788999999996 666532111
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC---CCc--cccceeec-CCCCEEEEEecCCCCCCCCcccc
Q 004149 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---SIS--SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~---~~~--~~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
+....|+.+|+ .++..+.+.. ... ....+.|. ++|..++|++.++ | .
T Consensus 207 --q~~~~l~~~d~-----------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~----G----~ 259 (353)
T PF00930_consen 207 --QNRLDLVLCDA-----------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD----G----Y 259 (353)
T ss_dssp --STEEEEEEEEE-----------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT----S----S
T ss_pred --CCEEEEEEEEC-----------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC----C----C
Confidence 22346778887 5555443321 111 13355665 9999999999864 3 6
Q ss_pred ccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECC-CCcE
Q 004149 349 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVS-SGEL 425 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~--~~~~~l~~~d~~-tg~~ 425 (771)
.+|++++..++..+++|.+..++.. ...|.++++.|+|.+.. ....+||+++++ ++++
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~-------------------i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTS-------------------ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEE-------------------EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred cEEEEEcccccceeccccCceeecc-------------------cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 7899999999888888887766543 23688899999999985 357799999999 9999
Q ss_pred EEecCCCCCceeeEEeecCCEEEEEEeCCCCCC
Q 004149 426 LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 426 ~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~ 458 (771)
++||..........||+++++++..+++++.|+
T Consensus 321 ~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp EESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred EeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 999988775557899999999999999999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=193.15 Aligned_cols=231 Identities=16% Similarity=0.172 Sum_probs=151.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCC-ChhhhhcCCCCc--cccch
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQSLPGKV--GSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~-g~~~~~~~~~~~--~~~~~ 597 (771)
+....|.|.+ ..+++.|+||++||.+.. ...+...+..|+++||.|+++|+||.+.. +..........+ .....
T Consensus 12 ~~~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~ 88 (249)
T PRK10566 12 IEVLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNM 88 (249)
T ss_pred cceEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHH
Confidence 3345666763 124567999999997655 33577788899999999999999995421 000000000000 11236
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecC-CccchhhhhcCCCCCcchhhhhccCCCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
+|+.++++++.+++.++.++|+++|||+||++++.++.++|+...++++.. +... ...... .+ ..... ..
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~-----~~~~~-~~ 159 (249)
T PRK10566 89 QEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFT--SLARTL-FP-----PLIPE-TA 159 (249)
T ss_pred HHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHH--HHHHHh-cc-----ccccc-cc
Confidence 778888899988877899999999999999999999998887544433322 2111 110000 00 00000 00
Q ss_pred CcCCCCCChhhHHHHhhcCccccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC--EEEEEeCCCCccCCCCC
Q 004149 677 DSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~ 753 (771)
.... ........+...++...+.++ ++|+|++||++|.++|++++++++++++.+|.+ +++.++++++|.+.
T Consensus 160 ~~~~--~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~--- 234 (249)
T PRK10566 160 AQQA--EFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT--- 234 (249)
T ss_pred ccHH--HHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---
Confidence 0000 000111122334455556666 699999999999999999999999999998864 78999999999875
Q ss_pred ChHHHHHHHHHHHHHHh
Q 004149 754 SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 754 ~~~~~~~~i~~wl~~~l 770 (771)
.+.+..+.+||+++|
T Consensus 235 --~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 235 --PEALDAGVAFFRQHL 249 (249)
T ss_pred --HHHHHHHHHHHHhhC
Confidence 367899999999876
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=184.04 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=172.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+.+..|..+....+.|.. ..+++.+|+++||.+... ...|...+..|+..||.|+++|++| +|.+......-.
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~~-s~~~~~~a~~l~~~g~~v~a~D~~G---hG~SdGl~~yi~ 104 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEHS-SWRYQSTAKRLAKSGFAVYAIDYEG---HGRSDGLHAYVP 104 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCcccc-hhhHHHHHHHHHhCCCeEEEeeccC---CCcCCCCcccCC
Confidence 3456678889999999963 346788999999965432 3467778999999999999999999 444432111212
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh------------cC
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------GT 659 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------------~~ 659 (771)
-....++|+...++.+..+.....-..+++||||||.+++.++.++|..+.++|+.+|.+-+..-. -.
T Consensus 105 ~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~ 184 (313)
T KOG1455|consen 105 SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLS 184 (313)
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHH
Confidence 223347888888888877655555678999999999999999999999999999999987542111 01
Q ss_pred CCCCcchhhhhccC---------------CCCCcCCCCCChhhHHHHhhc--CccccccCCCCcEEEEeeCCCCccCcHH
Q 004149 660 TDIPDWCYVESYGS---------------KGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 660 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp~~~ 722 (771)
.-+|.|.....-.. .....+.+.+.......+.+. ....++.++..|+||+||+.|.+..+..
T Consensus 185 ~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~ 264 (313)
T KOG1455|consen 185 KLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKV 264 (313)
T ss_pred HhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHH
Confidence 11233331111000 000011111111111111111 1224578899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCC---CCCChHHHHHHHHHHHHHH
Q 004149 723 GLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~wl~~~ 769 (771)
+++||+..... +.++.+|||+-|.+. .+++...++..|++||+++
T Consensus 265 Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 265 SKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999988765 467779999999987 3666778899999999875
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=198.17 Aligned_cols=246 Identities=15% Similarity=0.224 Sum_probs=158.1
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|.++++..+.|.+ .....++||++||.+... ...+...+..|+++||.|+++|+||. |.+.........
T Consensus 37 ~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGh---G~S~~~~~~~~~ 110 (330)
T PLN02298 37 FTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGH---GRSEGLRAYVPN 110 (330)
T ss_pred EEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCC---CCCCCccccCCC
Confidence 344578999998888753 224568999999975432 22445566788899999999999994 443211110011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcch------
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC------ 666 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~------ 666 (771)
....++|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|......... +.|.
T Consensus 111 ~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~----~~~~~~~~~~ 186 (330)
T PLN02298 111 VDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR----PPWPIPQILT 186 (330)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC----CchHHHHHHH
Confidence 122367889999998765334456799999999999999999999999999999998754321100 0000
Q ss_pred hhhhccCC--------CCC-----------------cCCCCCChhhHHHHhhc--CccccccCCCCcEEEEeeCCCCccC
Q 004149 667 YVESYGSK--------GKD-----------------SFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 667 ~~~~~~~~--------~~~-----------------~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp 719 (771)
....+... ... .+...+.......+... .....+.++++|+||+||++|.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp 266 (330)
T PLN02298 187 FVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTD 266 (330)
T ss_pred HHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCC
Confidence 00000000 000 00000000000000000 0123456789999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC---hHHHHHHHHHHHHHHh
Q 004149 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 770 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~wl~~~l 770 (771)
++.++.+++.+... ..+++++++++|.+...+. ...+...+.+||++++
T Consensus 267 ~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 267 PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999998887542 3688899999999764322 2457788999999876
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=195.80 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=158.8
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|..+.+.+|.|. ..+.++|+++||.+.. ...|...+..|+++||.|+++|+||. |.+.........
T Consensus 5 ~~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~---G~S~~~~~~~~~ 75 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPI----TYPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGH---GRSNGEKMMIDD 75 (276)
T ss_pred eecCCCCEEEEEeccCC----CCCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCC---CCCCCccCCcCC
Confidence 34558889999999884 2455889999997654 55788889999999999999999994 443211111011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-------------hcC
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGT 659 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------------~~~ 659 (771)
....++|+...++++.+.. ...+++|+|||+||.+++.++.++|++++++|+.+|..+.... ...
T Consensus 76 ~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1123567777777765542 3467999999999999999999999999999999997642110 000
Q ss_pred CCC-Ccch---hh----h--hccCCCCCcCCCCCChhhHHHHhhc--CccccccCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004149 660 TDI-PDWC---YV----E--SYGSKGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 660 ~~~-~~~~---~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~ 727 (771)
... ..+. .. + .+...... ................ .....+.++++|+|+++|++|.++|++.+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLV-NHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCc-cCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHH
Confidence 000 0000 00 0 00000000 0000000000000000 112346788999999999999999999999988
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHHh
Q 004149 728 RALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 770 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~l 770 (771)
+.+.. ++++.++++++|.+..+.. ..++++.+.+||+++.
T Consensus 233 ~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 233 QHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 87643 4789999999999876533 6789999999999864
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=197.29 Aligned_cols=270 Identities=16% Similarity=0.170 Sum_probs=196.1
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004149 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
..+..+|+.++.++......+ +|.... ..+...+++++.|- ++.....++... .....|
T Consensus 140 ~~ad~~~e~lt~~~g~~~~~i-----------~~v~~~---~~~~~~~~l~~~D~--dg~~~~~l~~~~-----~~~~~p 198 (425)
T COG0823 140 TIADAIYEKLTGIKGAFDTRI-----------AYVAES---DGGPLPYELALGDY--DGYNQQKLTDSG-----SLILTP 198 (425)
T ss_pred hhhhhhhhhhcCCcceecceE-----------EEEeec---ccCCCCceEEEEcc--CCcceeEecccC-----cceecc
Confidence 445567777777776664433 342211 23445677888654 344555555554 346779
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
.|||||++++|+.-..++..+++.+. ..+...+++...... ..++|||||++|+|...+.
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~----------~~P~fspDG~~l~f~~~rd--------- 259 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN----------GAPAFSPDGSKLAFSSSRD--------- 259 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc----------CCccCCCCCCEEEEEECCC---------
Confidence 99999999999987664447888888 667767777654333 5899999999999987654
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004149 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+.++...+| +........+.|||||++ |||++.
T Consensus 260 --------------------------------g~~~iy~~dl~~~~~~~L--t~~~gi~~~Ps~spdG~~----ivf~Sd 301 (425)
T COG0823 260 --------------------------------GSPDIYLMDLDGKNLPRL--TNGFGINTSPSWSPDGSK----IVFTSD 301 (425)
T ss_pred --------------------------------CCccEEEEcCCCCcceec--ccCCccccCccCCCCCCE----EEEEeC
Confidence 458999999999998888 555555669999999999 999985
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004149 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||++++ +++..+++|...+....|.|||||++|+|.+... |
T Consensus 302 r~G------------~p~I~~~~~-----------------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~----g 348 (425)
T COG0823 302 RGG------------RPQIYLYDL-----------------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG----G 348 (425)
T ss_pred CCC------------CcceEEECC-----------------CCCceeEeeccCCCCcCccCCCCCCEEEEEeccC----C
Confidence 433 238999998 8888899999888877999999999999999542 2
Q ss_pred CccccccceeeecCCCCC-CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004149 344 AHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
...+...|+.++.. +.++... ....++|++||+.|+|.+...+...|+.+...+
T Consensus 349 ----~~~i~~~~~~~~~~~~~lt~~~---------------------~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g 403 (425)
T COG0823 349 ----QWDIDKNDLASGGKIRILTSTY---------------------LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDG 403 (425)
T ss_pred ----ceeeEEeccCCCCcEEEccccc---------------------cCCCCCcCCCCceEEEeccCCCCceEEEeeccc
Confidence 26688888877663 2222221 235778999999999998888778898888744
Q ss_pred CcEEEecC
Q 004149 423 GELLRITP 430 (771)
Q Consensus 423 g~~~~l~~ 430 (771)
.....+..
T Consensus 404 ~~~~~~~~ 411 (425)
T COG0823 404 RVSRPLPL 411 (425)
T ss_pred eeEEEEec
Confidence 43434433
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=198.61 Aligned_cols=249 Identities=15% Similarity=0.159 Sum_probs=157.2
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+.+|.++.+..+.|. ..+..|+||++||.+... ...|...+..|+++||.|+++|+||. |.+.........
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~---G~S~~~~~~~~~ 138 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGF---GLSEGLHGYIPS 138 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCC---CCCCCCCCCcCC
Confidence 34567899999998886 234568999999965432 12345677889899999999999994 443211000001
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC------------C
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------------T 660 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~------------~ 660 (771)
....++|+.+.++.+..+...+..+++|+||||||.+++.++.++|++++++|+.+|.......... .
T Consensus 139 ~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T PLN02385 139 FDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLAN 218 (349)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHHHH
Confidence 1123567777777776543344568999999999999999999999999999999986542110000 0
Q ss_pred CCCcchhh------hh-ccCC--------CCCcCCCCCCh-hhHHHHhhc-CccccccCCCCcEEEEeeCCCCccCcHHH
Q 004149 661 DIPDWCYV------ES-YGSK--------GKDSFTESPSV-EDLTRFHSK-SPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~~~~~~~------~~-~~~~--------~~~~~~~~~~~-~~~~~~~~~-sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 723 (771)
..+.+... .. +... ....+...... .....+... .....+.++++|+|++||++|.++|++.+
T Consensus 219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~ 298 (349)
T PLN02385 219 LLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPSVS 298 (349)
T ss_pred HCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChHHH
Confidence 00000000 00 0000 00000000000 001111111 11234678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCC---hHHHHHHHHHHHHHHh
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 770 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~wl~~~l 770 (771)
+.+++.+.. .+.+++++++++|.+...+. ...++..+.+||++++
T Consensus 299 ~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 299 KFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 998887753 23688899999999874433 2347889999999875
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=194.39 Aligned_cols=232 Identities=18% Similarity=0.170 Sum_probs=164.2
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC
Q 004149 110 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 186 (771)
Q Consensus 110 G~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 186 (771)
+++|||++...++ ...+++.+ ++...+.++...... ..+.|||||++|+|++...
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6889999875432 24555555 444544444433223 5899999999999986532
Q ss_pred CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 004149 187 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
...+||++|+.+++.+.+. ........++|||||+. |+|++...
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~- 269 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKD- 269 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecC-
Confidence 3478999999999887773 33333457899999999 99986322
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004149 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
...+||.+|+ .++..++|+.......+|.|||||++|+|.+.+. |
T Consensus 270 -----------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~----g--- 314 (429)
T PRK01742 270 -----------GVLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS----G--- 314 (429)
T ss_pred -----------CcEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC----C---
Confidence 2237999998 7788899998777788999999999999998764 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+||.++..++....++. . . ..+.|||||+.|++... ..++.+|+.+|+.+
T Consensus 315 -~~~I~~~~~~~~~~~~l~~-----------------~-----~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 315 -SPQVYRMSASGGGASLVGG-----------------R-----G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred -CceEEEEECCCCCeEEecC-----------------C-----C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 4689998876654322210 0 1 24579999999988754 35788999999988
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
.++... ....+.|+|||+.|++..... .-..+++.+
T Consensus 367 ~lt~~~-~~~~~~~sPdG~~i~~~s~~g-~~~~l~~~~ 402 (429)
T PRK01742 367 VLSSTF-LDESPSISPNGIMIIYSSTQG-LGKVLQLVS 402 (429)
T ss_pred EecCCC-CCCCceECCCCCEEEEEEcCC-CceEEEEEE
Confidence 887543 234578999999999887533 333344444
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=185.72 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=151.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCCCCC--CC----------C
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSL--GF----------G 581 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~V~~~d~rG~~--~~----------g 581 (771)
-|..+.+.+|.|+. ...+++|+|+++||.+... ..|. .....++..||.|++||..+.+ .. +
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~--~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTD--ENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcCh--HHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 35678889999983 3457899999999976543 2232 2345667889999999975422 00 1
Q ss_pred hhhh-hcCCCCcc-----ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh
Q 004149 582 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~-~~~~~~~~-----~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 655 (771)
..+. +.....+. ....+++...++.... .++.++++|+|+||||++++.++.++|++|+++++.+|+++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1110 00000110 1112333333333222 26889999999999999999999999999999999999876431
Q ss_pred hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCC
Q 004149 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 734 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~-~~~~~~~~l~~~g 734 (771)
. .+.. .. ...+.+.+ ....+.+...+++..+...++|+|++||++|.+++.. +++.+++++++.|
T Consensus 183 ~-------~~~~-~~-----~~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 183 C-------PWGQ-KA-----FTNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred C-------chhh-HH-----HHHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 1 0100 00 00111111 2334444455566666677899999999999999863 5789999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
.++++.++|+.+|.+. ....++++.+.|..+++|
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 9999999999999865 223445555666666654
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=185.22 Aligned_cols=248 Identities=19% Similarity=0.231 Sum_probs=155.1
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|.++++..+.|. .+.++||++||.... ...|...+..|+++||.|+++|+||.|.++........+.
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~--~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIES--YVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccch--HHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 445567888988887653 234789999996543 3356677778889999999999999554432110000011
Q ss_pred c--cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh------------
Q 004149 592 V--GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------ 657 (771)
Q Consensus 592 ~--~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------------ 657 (771)
. ...-++|+.++++.+... .+..++.++||||||.+++.++.++|+.++++|+.+|........
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~ 184 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWA 184 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHH
Confidence 1 112245666666655443 245789999999999999999999999999999999865321000
Q ss_pred -cCCCC--------CcchhhhhccCCC-----------CCcCCCCC-------ChhhHHHHhhc--CccccccCCCCcEE
Q 004149 658 -GTTDI--------PDWCYVESYGSKG-----------KDSFTESP-------SVEDLTRFHSK--SPISHISKVKTPTI 708 (771)
Q Consensus 658 -~~~~~--------~~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~--sp~~~~~~i~~P~L 708 (771)
..... ..|.... +.... ...+...+ ........... .....+.++++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 263 (330)
T PRK10749 185 EGHPRIRDGYAIGTGRWRPLP-FAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLL 263 (330)
T ss_pred HHhcCCCCcCCCCCCCCCCCC-cCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 00000 0000000 00000 00000000 00000000000 11234577899999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCC---CEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHH
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKY 769 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~ 769 (771)
+++|++|.+++++.++.+++.+++.+. +++++++++++|.+..+.. +..+++.|.+||+++
T Consensus 264 ii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 264 LLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred EEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987653 4689999999999875544 667889999999875
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=192.05 Aligned_cols=232 Identities=15% Similarity=0.151 Sum_probs=150.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++.++++.|+ ..++.|+||+.||. .+.....|...+..|+++||+|+++|+||.|.... . . . .
T Consensus 175 ~~~g~~l~g~l~~P~---~~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~---~--~--~-~ 242 (414)
T PRK05077 175 IPGGGPITGFLHLPK---GDGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSK---W--K--L-T 242 (414)
T ss_pred cCCCcEEEEEEEECC---CCCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCC---C--C--c-c
Confidence 345678999999997 34677887766553 33212346667788999999999999999543311 0 0 0 1
Q ss_pred cch-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-hh-cCCCCCcchhhhhc
Q 004149 595 QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MV-GTTDIPDWCYVESY 671 (771)
Q Consensus 595 ~~~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~-~~~~~~~~~~~~~~ 671 (771)
.+. ....++++++...+.+|.+||+++|+|+||++++.++..+|++++++|+.+|+++... .. .....+.. +...+
T Consensus 243 ~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~l 321 (414)
T PRK05077 243 QDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDVL 321 (414)
T ss_pred ccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHHH
Confidence 122 2234778899888888999999999999999999999988999999999998764210 00 00000100 00000
Q ss_pred cCCCCCcCCC-CCChhh-HHHHhhcCcc--cc-ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004149 672 GSKGKDSFTE-SPSVED-LTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 672 ~~~~~~~~~~-~~~~~~-~~~~~~~sp~--~~-~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
.. .+.. ....+. ...+...+.. .. ..++++|+|+++|++|+++|+++++.+.+... +.+++++|++
T Consensus 322 a~----~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~~i~~~- 392 (414)
T PRK05077 322 AS----RLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKLLEIPFK- 392 (414)
T ss_pred HH----HhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEccCC-
Confidence 00 0000 001111 1111111211 11 25789999999999999999999987765543 4688899986
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 747 HGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|.+ +...+++..+.+||+++|.
T Consensus 393 ~~~---e~~~~~~~~i~~wL~~~l~ 414 (414)
T PRK05077 393 PVY---RNFDKALQEISDWLEDRLC 414 (414)
T ss_pred Ccc---CCHHHHHHHHHHHHHHHhC
Confidence 322 3557889999999999873
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=181.58 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=142.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC--CCh-hh-hhcC---CCCcc
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG--FGE-EA-LQSL---PGKVG 593 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~--~g~-~~-~~~~---~~~~~ 593 (771)
+.+++..|++ .++.|.||++|+..+. .......++.|+++||.|++||+-+..+ ... .. .... .....
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4688999984 3688999999996543 2445567889999999999999754332 111 00 0000 00011
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
.....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|...|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 22357888999999998878899999999999999999998876 67899988777100
Q ss_pred CCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004149 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
. ..+.....++++|+|+++|++|+.++.+....+.+.|++++.++++.+||+++|+|....
T Consensus 134 ---------~----------~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 ---------P----------PPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ---------G----------GGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ---------C----------CcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 0 011233556789999999999999999999999999999999999999999999998533
Q ss_pred -------ChHHHHHHHHHHHHHHh
Q 004149 754 -------SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 754 -------~~~~~~~~i~~wl~~~l 770 (771)
...+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 34678899999999987
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=190.66 Aligned_cols=243 Identities=15% Similarity=0.159 Sum_probs=178.6
Q ss_pred CCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 107 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 107 SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
.+.+.+++|++... ++...++.++ +++..++++...... ..+.|||||++|+|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 44678899998764 3456677777 555666676643323 4889999999999985432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+...|+++|+.+++.+.+ .........+.|||||+. |+|+...
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEECC
Confidence 236899999999988777 333334556899999999 9987632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
+...+||.+++ .++..++++........|.|||||++|+|.+.+. |
T Consensus 255 ------------~~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~----g- 300 (417)
T TIGR02800 255 ------------DGNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG----G- 300 (417)
T ss_pred ------------CCCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC----C-
Confidence 23348999998 7778888887666667899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|+|||+.|++.....+..+|+.+++.++.
T Consensus 301 ---~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 301 ---SPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred ---CceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 358999998876644332111 023467899999999998876677789999999988
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
.+.++.... ...+.|++||+.|++.+..... ..+++.+.
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~ 396 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVST 396 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEEC
Confidence 888775433 3446899999999998876554 56676654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=177.18 Aligned_cols=231 Identities=11% Similarity=0.066 Sum_probs=150.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch--HHHHHH-HHCCcEEEEECC--CCCCCCCh--hh-----
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFL-SSVGYSLLIVNY--RGSLGFGE--EA----- 584 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~--~~~~~l-a~~G~~V~~~d~--rG~~~~g~--~~----- 584 (771)
.+.++.+.+|.|++.. .++.|+|+++||.+... ..|. ..+..+ ++.||.|++||+ ||.+..+. .|
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~--~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~ 99 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTH--ENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKG 99 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCc--cHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCC
Confidence 3567888999998642 35689999999977553 2332 223344 567999999997 55432221 11
Q ss_pred ---h-hcCCCCcc-c-cchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh
Q 004149 585 ---L-QSLPGKVG-S-QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 585 ---~-~~~~~~~~-~-~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 657 (771)
. +....... . .....+.+.+..+++ ...++.++++|+|+||||++++.++.++|+.++++++.+|+.+....
T Consensus 100 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~- 178 (275)
T TIGR02821 100 AGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC- 178 (275)
T ss_pred ccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC-
Confidence 0 00000000 0 112233334444333 34478899999999999999999999999999999999998764211
Q ss_pred cCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCcccccc--CCCCcEEEEeeCCCCccCc-HHHHHHHHHHHhCC
Q 004149 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQYARALREKG 734 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~P~Lii~G~~D~~vp~-~~~~~~~~~l~~~g 734 (771)
..... .... +..... ..+...+|...+. ...+|+++.||+.|+.+|. .++..+.+.|+++|
T Consensus 179 ---~~~~~-~~~~--------~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g 242 (275)
T TIGR02821 179 ---PWGQK-AFSA--------YLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAG 242 (275)
T ss_pred ---cchHH-HHHH--------Hhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcC
Confidence 00000 0111 111111 1122334443333 2468999999999999998 68889999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++..+|+++|++.. ....+.+.++|+.+++
T Consensus 243 ~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 243 QALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred CCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 99999999999999863 3456788888888764
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=162.90 Aligned_cols=211 Identities=17% Similarity=0.204 Sum_probs=149.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
..+|+++||..++ ......+.++|.++||.|.+|.|||.+-....+.+..+..| ++|+.+++++|.+.++ +
T Consensus 15 ~~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~ 85 (243)
T COG1647 15 NRAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---D 85 (243)
T ss_pred CEEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---C
Confidence 3789999996655 55778889999999999999999995554444433322222 7899999999997753 6
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-CCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhc-
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK- 694 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 694 (771)
.|+++|.||||.+++.+|.++| ++++|..|+..+...... ...... +... ...+.+.........+...
T Consensus 86 eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~--y~~~-----~kk~e~k~~e~~~~e~~~~~ 156 (243)
T COG1647 86 EIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLE--YFRN-----AKKYEGKDQEQIDKEMKSYK 156 (243)
T ss_pred eEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHH--HHHH-----hhhccCCCHHHHHHHHHHhh
Confidence 8999999999999999999988 677777766554221100 000000 0111 1111111111111111111
Q ss_pred ---------------CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHH
Q 004149 695 ---------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 759 (771)
Q Consensus 695 ---------------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 759 (771)
.....++.|..|+|++.|.+|+.||.+.+..++..+.. .+.++.+|++.||.+.....+.++.
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~ 234 (243)
T COG1647 157 DTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVE 234 (243)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHH
Confidence 12345788999999999999999999999999998865 3578999999999999888888999
Q ss_pred HHHHHHHH
Q 004149 760 LNIGLWFK 767 (771)
Q Consensus 760 ~~i~~wl~ 767 (771)
+.++.||+
T Consensus 235 e~V~~FL~ 242 (243)
T COG1647 235 EDVITFLE 242 (243)
T ss_pred HHHHHHhh
Confidence 99999996
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=185.02 Aligned_cols=245 Identities=13% Similarity=0.113 Sum_probs=155.3
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...++..+.+..+.|. .....++||++||.+.. ...|...+..|+++||.|+++|+||.+.+... ......
T Consensus 115 ~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~---~~~~~~ 186 (395)
T PLN02652 115 FYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL---HGYVPS 186 (395)
T ss_pred EECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC---CCCCcC
Confidence 34456677888888885 33456899999996654 33567788899999999999999995443221 111111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCccchhhhhcC---------C
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGT---------T 660 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~~~---------~ 660 (771)
.....+|+.++++++.... +..+++|+||||||.+++.++. +|+ .++++|+.+|...+...... .
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~ 263 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSL 263 (395)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHHH
Confidence 1223578888888887652 2357999999999999997764 554 78999999997643210000 0
Q ss_pred CCCcchhhh--hccCCC-------CCcCC------CCCChhhHHHHhhcC--ccccccCCCCcEEEEeeCCCCccCcHHH
Q 004149 661 DIPDWCYVE--SYGSKG-------KDSFT------ESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~~~~~~~~--~~~~~~-------~~~~~------~~~~~~~~~~~~~~s--p~~~~~~i~~P~Lii~G~~D~~vp~~~~ 723 (771)
-.+.+.+.. ..+... ...+. +.............. ....+.++++|+|++||++|.++|++.+
T Consensus 264 ~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a 343 (395)
T PLN02652 264 VAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLAS 343 (395)
T ss_pred hCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHHH
Confidence 000000000 000000 00000 000000000000000 1234677899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++.+... ..++.++++++|.+.......++++.+.+||+.++
T Consensus 344 ~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 344 QDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred HHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 9998886542 36778899999998766667889999999999876
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-18 Score=175.03 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=154.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+.+.+|.|.. ...|+||++|||++.... ..+...+..|+. .|+.|+++|||.++++ .....+
T Consensus 68 ~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p~~~ 132 (318)
T PRK10162 68 QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFPQAI 132 (318)
T ss_pred ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCCCcH
Confidence 58889999962 246999999999876433 345667777876 6999999999986653 223358
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC------CCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
+|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.+. +..++++++.+|+.+.... ..+.
T Consensus 133 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~------~s~~-- 204 (318)
T PRK10162 133 EEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDS------VSRR-- 204 (318)
T ss_pred HHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCC------hhHH--
Confidence 9999999998764 347889999999999999999988642 3568899999998764211 0000
Q ss_pred hhccCCCCCcCCCCCChhhHHH----Hh-----hcCccc-----cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 669 ESYGSKGKDSFTESPSVEDLTR----FH-----SKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~----~~-----~~sp~~-----~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
.++.. +.. ........ |. ..+|.. .+...-+|++|++|+.|++. .+++.|+++|+++|
T Consensus 205 -~~~~~----~~~-l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~~aG 276 (318)
T PRK10162 205 -LLGGV----WDG-LTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLAAHQ 276 (318)
T ss_pred -HhCCC----ccc-cCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHHHcC
Confidence 00000 000 00000000 00 112221 11122379999999999987 68999999999999
Q ss_pred CCEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l~ 771 (771)
++++++++++..|++... +...+.+..+.+||+++|+
T Consensus 277 v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 277 QPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred CCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999997632 2345778899999999875
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-18 Score=179.69 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=160.1
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
..+.|||||++|+|...... +.+.+|++++++++..++
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 47899999999999854321 227899999999988877
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
.........+.|||||++ |+|+..+ +...+||.+|+ .++..++|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~r------------dg~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSR------------DGSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECC------------CCCccEEEEcC-----------------CCCcceecccC
Confidence 455566778999999999 9999843 34569999999 77778889999
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004149 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+...+|.|||||++|||.+.+. | ..+||++++++++.++++.... ....+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~----G----~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG----G----RPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC----C----CcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 88888999999999999999885 3 5699999999988766654431 122678
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 396 ~s~dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
|||||++|+|....++...+...++.++. .+.++.... ...+.++++++.+++..... .-+.++.....
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~ 402 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSLD 402 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeecc
Confidence 99999999999865566678888887776 555554433 34578899999999998777 44445555543
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-18 Score=173.54 Aligned_cols=245 Identities=14% Similarity=0.141 Sum_probs=156.1
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|.++....+.+.. .+..+||++||.... ...|...+..|..+||.|+++|.||.|.+.+ .....-.
T Consensus 13 ~~~~~d~~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r--~~rg~~~ 84 (298)
T COG2267 13 YFTGADGTRLRYRTWAAPE----PPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRGHGRSPR--GQRGHVD 84 (298)
T ss_pred eeecCCCceEEEEeecCCC----CCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCcCCch
Confidence 4455678888888887652 233899999996654 4467788999999999999999999544421 1111111
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh--hhc-----CCCCCc
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MVG-----TTDIPD 664 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--~~~-----~~~~~~ 664 (771)
....-..|+...++.+.+. .-..+++|+||||||.+++.++.+++..+.++|+.+|.+.+.. ... .....
T Consensus 85 ~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~- 161 (298)
T COG2267 85 SFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLL- 161 (298)
T ss_pred hHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhcccc-
Confidence 1111244555555555443 1347899999999999999999999999999999999887652 100 00000
Q ss_pred chhhhhccCCC-----CCcCCCCCChhhHHHHhhcCc-----------------------cccccCCCCcEEEEeeCCCC
Q 004149 665 WCYVESYGSKG-----KDSFTESPSVEDLTRFHSKSP-----------------------ISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 665 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~sp-----------------------~~~~~~i~~P~Lii~G~~D~ 716 (771)
......+.... ...-....... .......+| ......+++|+||++|++|.
T Consensus 162 ~~~~p~~~~~~~~~~~~~~~~~sr~~~-~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D~ 240 (298)
T COG2267 162 GRIRPKLPVDSNLLEGVLTDDLSRDPA-EVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDDR 240 (298)
T ss_pred cccccccccCcccccCcCcchhhcCHH-HHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCCc
Confidence 00000000000 00000000001 111111112 12245678999999999999
Q ss_pred ccC-cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh--HHHHHHHHHHHHHHh
Q 004149 717 RVP-VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYC 770 (771)
Q Consensus 717 ~vp-~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~wl~~~l 770 (771)
+++ .+...++++.+... ++++.+++|+.|.+..+... .++++.+.+||.+++
T Consensus 241 vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 241 VVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred cccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 998 67766666665432 37899999999998877666 889999999999876
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-18 Score=165.42 Aligned_cols=207 Identities=20% Similarity=0.251 Sum_probs=159.9
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh----hcCC----
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---- 589 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~----~~~~---- 589 (771)
+.++.+++.+|+ ...+.|+||++|+..+. .......++.|+.+||.|++||+-+..+...... ....
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 378999999998 44445999999996554 3467778999999999999999754222111110 0000
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.........|+.+++++|..++.++.++|+++|+||||.+++.++.+.| .++++++..|..-..
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~--------------- 149 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD--------------- 149 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC---------------
Confidence 0111344789999999999998889999999999999999999998866 789998876642100
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
......++++|+|+.+|+.|..+|......+.+.+.+.++.+++.+|+++.|+|
T Consensus 150 --------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 150 --------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred --------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 001145788999999999999999999999999999998899999999999998
Q ss_pred CCCC----------ChHHHHHHHHHHHHHHhC
Q 004149 750 ERPQ----------SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~----------~~~~~~~~i~~wl~~~l~ 771 (771)
..+. ...+.|+++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 8542 245788999999999874
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=159.62 Aligned_cols=210 Identities=16% Similarity=0.203 Sum_probs=151.6
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+..|..+.+..++|+. ...+++++.||...... ........| ...++.|+.+||+|.+.++.. +.+
T Consensus 42 t~rgn~~~~~y~~~~~----~~~~~lly~hGNa~Dlg--q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~-----psE-- 108 (258)
T KOG1552|consen 42 TSRGNEIVCMYVRPPE----AAHPTLLYSHGNAADLG--QMVELFKELSIFLNCNVVSYDYSGYGRSSGK-----PSE-- 108 (258)
T ss_pred cCCCCEEEEEEEcCcc----ccceEEEEcCCcccchH--HHHHHHHHHhhcccceEEEEecccccccCCC-----ccc--
Confidence 4456778888888762 35699999999643322 111122222 235899999999995444322 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-CCCCcchhhhhcc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESYG 672 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~ 672 (771)
....+|+.++.+||.+... ..++|+|+|+|+|...++.+|++.| .+|+|+.+|+.+....... .....|+
T Consensus 109 ~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~------ 179 (258)
T KOG1552|consen 109 RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCF------ 179 (258)
T ss_pred ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEee------
Confidence 2458999999999999876 7899999999999999999999988 9999999999876554322 1111000
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....-+..++.|++|+|++||++|+++|..++.+++++.++. ++..+..|+||.-.
T Consensus 180 -------------------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~-- 235 (258)
T KOG1552|consen 180 -------------------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDI-- 235 (258)
T ss_pred -------------------ccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCccc--
Confidence 000115667788999999999999999999999999999874 77788889999754
Q ss_pred CChHHHHHHHHHHHHHHh
Q 004149 753 QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~~l 770 (771)
+...++.+.+..|+...+
T Consensus 236 ~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 236 ELYPEYIEHLRRFISSVL 253 (258)
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 223467778888876543
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-18 Score=173.00 Aligned_cols=241 Identities=18% Similarity=0.185 Sum_probs=152.6
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhc----
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS---- 587 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~---- 587 (771)
.+.+-+|.+|.|+++.|++ ..++.|+||.+||.+.. ...+. ....++.+||+|+.+|.||.++...+....
T Consensus 60 ~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~-~~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPF-DLLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHH-HHHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCcc-cccccccCCeEEEEecCCCCCCCCCCccccCCCC
Confidence 5556678999999999985 45789999999995543 12222 234578999999999999977432221100
Q ss_pred CC-----------CC-ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc-chh
Q 004149 588 LP-----------GK-VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA 654 (771)
Q Consensus 588 ~~-----------~~-~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~ 654 (771)
.. .. +....+.|+.+++++|.+++.+|.+||++.|.|+||.+++.+++..+ +++++++..|.. |..
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~ 213 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFR 213 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHH
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchh
Confidence 00 00 11123579999999999999999999999999999999999999865 699888888854 444
Q ss_pred hhhcCCC-CCcchhhhhccCCCCCcCCCC--CChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 655 LMVGTTD-IPDWCYVESYGSKGKDSFTES--PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 655 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
....... ...+.....+.. ..... ...+..+.+...+....+++|++|+|+..|-.|..+||......|+++.
T Consensus 214 ~~~~~~~~~~~y~~~~~~~~----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~ 289 (320)
T PF05448_consen 214 RALELRADEGPYPEIRRYFR----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIP 289 (320)
T ss_dssp HHHHHT--STTTHHHHHHHH----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--
T ss_pred hhhhcCCccccHHHHHHHHh----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccC
Confidence 3322211 111111111100 00000 1123344566777888899999999999999999999999999999886
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
. +.++.+||..+|... ......+.++||.+|
T Consensus 290 ~---~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 290 G---PKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp S---SEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred C---CeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 4 489999999999764 223378899999875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-17 Score=184.68 Aligned_cols=265 Identities=15% Similarity=0.190 Sum_probs=176.7
Q ss_pred eeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEE----cCCC--------CCCC-----C--Cc-------
Q 004149 501 IMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVL----HGGP--------HSVS-----L--SS------- 554 (771)
Q Consensus 501 ~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~----HGg~--------~~~~-----~--~~------- 554 (771)
.+.+-++...++-.||.--.|++.+++|+....+-+.|+|+-. .|.- +... . ..
T Consensus 170 re~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 249 (767)
T PRK05371 170 REVVYVETPVDTDQDGKLDLVKVTIVRPKETASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPPRAQFTPLKT 249 (767)
T ss_pred EEEEEEeCCCCCCCCCCcceEEEEEECCCccCCCCccceEEecCccccCCCCcccccccccCCccccccCCccccccccc
Confidence 3444455544555555555789999999865444477877733 2320 0000 0 00
Q ss_pred ------------------chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC--CC
Q 004149 555 ------------------YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL--AN 614 (771)
Q Consensus 555 ------------------~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~d 614 (771)
-....++|+.+||+|+.+|.||.+++++.+ ...+..+.+|+.++|+||..+.. .|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d 324 (767)
T PRK05371 250 QPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTD 324 (767)
T ss_pred cccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccc
Confidence 113557899999999999999987765542 22345678999999999985321 12
Q ss_pred ------------CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCC----cch------hhh-hc
Q 004149 615 ------------PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP----DWC------YVE-SY 671 (771)
Q Consensus 615 ------------~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~----~~~------~~~-~~ 671 (771)
..||+++|.||||++++.+|...|+.++++|..+++.++..++...... .|. +.. .+
T Consensus 325 ~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~ 404 (767)
T PRK05371 325 RTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTY 404 (767)
T ss_pred cccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhh
Confidence 5799999999999999999998888999999999988765443221100 000 000 00
Q ss_pred c---CCC-----CCc-------CC---CCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 672 G---SKG-----KDS-------FT---ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 672 ~---~~~-----~~~-------~~---~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
. ... ... +. ........+.|...++..+++++++|+|++||..|.++++.++.+++++|++.
T Consensus 405 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~ 484 (767)
T PRK05371 405 SRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPEN 484 (767)
T ss_pred hcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhc
Confidence 0 000 000 00 00000111234556777888999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+++.++++.++ +|.........++.+.+.+||+++|+
T Consensus 485 g~pkkL~l~~g-~H~~~~~~~~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 485 GVPKKLFLHQG-GHVYPNNWQSIDFRDTMNAWFTHKLL 521 (767)
T ss_pred CCCeEEEEeCC-CccCCCchhHHHHHHHHHHHHHhccc
Confidence 98999877755 68765444556788999999999985
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=159.97 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=133.6
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCC----CCChhhhhcCCCCccccc-------hhhHHH
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL----GFGEEALQSLPGKVGSQD-------VNDVLT 602 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~----~~g~~~~~~~~~~~~~~~-------~~D~~~ 602 (771)
....|+||++||.+.+ ...+...+..|+..++.+..+.++|.. +.|..|.... ....... .+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 4456899999997665 446777888888777655566666532 1133333211 1011111 223445
Q ss_pred HHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCC
Q 004149 603 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 682 (771)
Q Consensus 603 ~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (771)
.++++.++..++.++|+|+|+|+||.+++.++.++|+.++++++.++... . .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-----------~-----------------~ 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-----------S-----------------L 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-----------c-----------------c
Confidence 56666666668889999999999999999999888988887776655320 0 0
Q ss_pred CChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHH
Q 004149 683 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 683 ~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 762 (771)
+. ....++|+|++||++|++||++.++++++.|++.+.++++..|++++|.+. .+....+
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~ 201 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFA 201 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHH
Confidence 00 011368999999999999999999999999999999999999999999986 4677888
Q ss_pred HHHHHHHh
Q 004149 763 GLWFKKYC 770 (771)
Q Consensus 763 ~~wl~~~l 770 (771)
.+||.+.|
T Consensus 202 ~~~l~~~l 209 (232)
T PRK11460 202 LDRLRYTV 209 (232)
T ss_pred HHHHHHHc
Confidence 88988776
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=166.11 Aligned_cols=220 Identities=15% Similarity=0.167 Sum_probs=131.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.. ...|...+..|++.||.|+++|+|| +|.+.. +........++..+.+..+++. ++.+
T Consensus 46 ~~~lvliHG~~~~--~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~---~~~~~~~~~~~~a~~l~~~l~~--l~~~ 115 (302)
T PRK00870 46 GPPVLLLHGEPSW--SYLYRKMIPILAAAGHRVIAPDLIG---FGRSDK---PTRREDYTYARHVEWMRSWFEQ--LDLT 115 (302)
T ss_pred CCEEEEECCCCCc--hhhHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCCcccCCHHHHHHHHHHHHHH--cCCC
Confidence 4789999997644 4568888888988899999999999 554421 1111122344555444444443 2456
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh------hh---cC-CCCCcchhhh----hc----cCCCCCc
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------MV---GT-TDIPDWCYVE----SY----GSKGKDS 678 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------~~---~~-~~~~~~~~~~----~~----~~~~~~~ 678 (771)
++.|+||||||.+++.++.++|++++++|+.++...... +. .. ...+...... .. .......
T Consensus 116 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (302)
T PRK00870 116 DVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAA 195 (302)
T ss_pred CEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHH
Confidence 899999999999999999999999999998886421100 00 00 0000000000 00 0000000
Q ss_pred CCCCCChh---h-HHHH---hhcC-----------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004149 679 FTESPSVE---D-LTRF---HSKS-----------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 679 ~~~~~~~~---~-~~~~---~~~s-----------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
+......+ . ...+ .... -...+.++++|+|+++|++|..+|... +.+.+.+.+. ..+++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~ 273 (302)
T PRK00870 196 YDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHP 273 (302)
T ss_pred hhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccc-ccccee
Confidence 00000000 0 0000 0000 012356789999999999999999765 6666666532 113477
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 741 VFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+++++||.... +....+.+.+.+||+++
T Consensus 274 ~i~~~gH~~~~-e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 274 TIKGAGHFLQE-DSGEELAEAVLEFIRAT 301 (302)
T ss_pred eecCCCccchh-hChHHHHHHHHHHHhcC
Confidence 89999998764 44568889999999865
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-17 Score=169.29 Aligned_cols=233 Identities=21% Similarity=0.287 Sum_probs=157.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch--HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+..+.+.+|.| ........|+||++|||++........ .....++..|+.|+++|||-.+++ ....
T Consensus 61 ~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~ 128 (312)
T COG0657 61 GDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPA 128 (312)
T ss_pred CCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCc
Confidence 33466889999 223556789999999999876554333 345566789999999999987654 3344
Q ss_pred chhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 596 DVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
.++|+.+++.|+.++. .+|+++|+|+|+|.||.+++.++....+ ..++.++++|..+... . ......+...
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~~~~~ 206 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPGYGEA 206 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhhcCCc
Confidence 6899999999999773 4889999999999999999999876433 5688999999987664 1 1111000000
Q ss_pred hhccCC-----CCCcCCCCCChhhHHHHhhcCcccc--ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 669 ESYGSK-----GKDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 669 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+... ....+..... + ......+|+.. +.. -+|++|++|+.|.+.+ +++.+.++|+++|+++++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~--~-~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 207 DLLDAAAILAWFADLYLGAAP--D-REDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred cccCHHHHHHHHHHHhCcCcc--c-cCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 000000 0000000000 0 00012344432 233 5789999999999996 89999999999999999999
Q ss_pred eCCCCccCCCC--CChHHHHHHHHHHHHHHh
Q 004149 742 FPNDVHGIERP--QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 742 ~~~~~H~~~~~--~~~~~~~~~i~~wl~~~l 770 (771)
+++..|.|... ......+.++..|+...+
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~~~ 311 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRAAL 311 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHHhc
Confidence 99999988432 223455677888877543
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-17 Score=157.22 Aligned_cols=192 Identities=18% Similarity=0.145 Sum_probs=124.1
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCCCCCCCChhh--hhcCCCCccccch
Q 004149 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDV 597 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~V~~~d~rG~~~~g~~~--~~~~~~~~~~~~~ 597 (771)
+++|.|++. .++.|+||++||++.... .+. .....+.+.||.|++||++|.++.+..+ ........+..+.
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~--~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTAS--AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEV 76 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHH--HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccH
Confidence 368889863 467899999999775432 221 1344556789999999999865433221 1111112233457
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
.++...++++.++..+|++||+|+|+|+||++++.++.++|++++++++.++....... .. ......
T Consensus 77 ~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~~-----~~~~~~---- 143 (212)
T TIGR01840 77 ESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----SS-----ISATPQ---- 143 (212)
T ss_pred HHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----cc-----hhhHhh----
Confidence 88889999999887789999999999999999999999999999999888775311000 00 000000
Q ss_pred cCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
................. .....+..+|++|+||++|.+||++.++++++++++.
T Consensus 144 -~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 144 -MCTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred -cCCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 00001111111111110 1112233456889999999999999999999999875
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=147.49 Aligned_cols=224 Identities=20% Similarity=0.282 Sum_probs=158.6
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
+....|..++++++..- +...|+++++|+..++.. .....+. .+.+.+..|++++||| ||.+.. .+.
T Consensus 58 ~l~T~D~vtL~a~~~~~-----E~S~pTlLyfh~NAGNmG--hr~~i~~~fy~~l~mnv~ivsYRG---YG~S~G--sps 125 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLS-----ESSRPTLLYFHANAGNMG--HRLPIARVFYVNLKMNVLIVSYRG---YGKSEG--SPS 125 (300)
T ss_pred EEEcCcceeEeeeeecc-----cCCCceEEEEccCCCccc--chhhHHHHHHHHcCceEEEEEeec---cccCCC--Ccc
Confidence 44566788999999982 347899999999776542 2223333 5578899999999999 555421 122
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
+.| -.-|..++++|+..++..|..+++++|.|.||..|.++|++..+++.|+++.+.+.++..+.-..-.+
T Consensus 126 E~G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p------- 196 (300)
T KOG4391|consen 126 EEG--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFP------- 196 (300)
T ss_pred ccc--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheecc-------
Confidence 222 25688999999999999999999999999999999999999999999999999887764332111000
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
+.. +.+ +.+-.... .+....+...+.|.|++.|.+|.+|||.+.+++|+..... ..++..||++.|+-.
T Consensus 197 ~~~---k~i---~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT 265 (300)
T KOG4391|consen 197 FPM---KYI---PLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDT 265 (300)
T ss_pred chh---hHH---HHHHHHhh---hcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCce
Confidence 000 000 00000001 1222334466789999999999999999999999987654 367889999999744
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 004149 751 RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 751 ~~~~~~~~~~~i~~wl~~~ 769 (771)
-.. .-+++.|.+|+.+.
T Consensus 266 ~i~--dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 266 WIC--DGYFQAIEDFLAEV 282 (300)
T ss_pred EEe--ccHHHHHHHHHHHh
Confidence 222 24788899998765
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-17 Score=151.02 Aligned_cols=240 Identities=17% Similarity=0.198 Sum_probs=159.3
Q ss_pred cccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhh----hh
Q 004149 511 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA----LQ 586 (771)
Q Consensus 511 ~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~----~~ 586 (771)
.++..-.|.+|.+|++.|+. ..++.|+||-.||-.+..+ ....+-.++..||+|+.+|.||.+++..+. ..
T Consensus 59 vTf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g---~~~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p~~ 133 (321)
T COG3458 59 VTFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG---EWHDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPGG 133 (321)
T ss_pred EEEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC---CccccccccccceeEEEEecccCCCccccCCCCCCC
Confidence 47777789999999999984 3388999999999443322 112233567889999999999977653211 11
Q ss_pred -cCCCC------------ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch
Q 004149 587 -SLPGK------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 587 -~~~~~------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~ 653 (771)
..++. +....+.|+..+++.+.....+|.+||++.|.|.||.+++.+++.. .+++++++..|...-
T Consensus 134 ~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl~d 212 (321)
T COG3458 134 PSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFLSD 212 (321)
T ss_pred CcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhccccccccccc
Confidence 11111 1112356899999999998889999999999999999999998875 479999999997642
Q ss_pred hh-hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh
Q 004149 654 AL-MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732 (771)
Q Consensus 654 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~ 732 (771)
.. .........+.....|.. .......+..+.+...+....+.++|.|+|+..|-.|++|||....+.++++..
T Consensus 213 f~r~i~~~~~~~ydei~~y~k-----~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~ 287 (321)
T COG3458 213 FPRAIELATEGPYDEIQTYFK-----RHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTT 287 (321)
T ss_pred chhheeecccCcHHHHHHHHH-----hcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccC
Confidence 21 111110000100001100 011112233444445556677889999999999999999999999999998865
Q ss_pred CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 733 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
. .++.+||.-+|.-. +. -..+++..|++.
T Consensus 288 ~---K~i~iy~~~aHe~~-p~---~~~~~~~~~l~~ 316 (321)
T COG3458 288 S---KTIEIYPYFAHEGG-PG---FQSRQQVHFLKI 316 (321)
T ss_pred C---ceEEEeeccccccC-cc---hhHHHHHHHHHh
Confidence 3 56667777778643 11 123456666654
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=160.29 Aligned_cols=231 Identities=19% Similarity=0.260 Sum_probs=158.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---~~~~~~~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+..++|+|.......+.|+|||+|||++... ...|......+ .+.+..|+++|||-++++ ....
T Consensus 73 ~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-----------~~Pa 141 (336)
T KOG1515|consen 73 NLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-----------PFPA 141 (336)
T ss_pred CeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC-----------CCCc
Confidence 37788999987655578999999999998765 34555566665 678999999999987664 3345
Q ss_pred chhhHHHHHHHHHHc----CCCCCCeEEEEEcChhHHHHHHHHHhC------CCceeEEEecCCccchhhhhcCC-----
Q 004149 596 DVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTT----- 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~----- 660 (771)
.++|+.+++.|+.++ ..+|++||+|+|-|.||.+|.+++.+. +..+++.|++.|++........+
T Consensus 142 ~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~~ 221 (336)
T KOG1515|consen 142 AYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQNL 221 (336)
T ss_pred cchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHhh
Confidence 689999999999885 448999999999999999999988753 34689999999987643322110
Q ss_pred CCC---cchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc-----cccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 661 DIP---DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 661 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
+.. .+.....+.. ...|...........+|.. ..... -+|+|++.++.|... +++..+.++|+
T Consensus 222 ~~~~~~~~~~~~~~w~------~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lk 293 (336)
T KOG1515|consen 222 NGSPELARPKIDKWWR------LLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLK 293 (336)
T ss_pred cCCcchhHHHHHHHHH------HhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHHH
Confidence 000 0000000000 0000000000000112222 11122 356999999999888 89999999999
Q ss_pred hCCCCEEEEEeCCCCccCCC--C--CChHHHHHHHHHHHHHH
Q 004149 732 EKGVETKVIVFPNDVHGIER--P--QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~--~--~~~~~~~~~i~~wl~~~ 769 (771)
+.|++++++.++++.|++.. + ....+.+..+..|+++.
T Consensus 294 k~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 294 KAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 99999999999999998653 2 24456777888888764
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=169.17 Aligned_cols=243 Identities=15% Similarity=0.123 Sum_probs=144.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.||..+...++.+.........|+||++||..++.. ..| ...+..+.++||.|+++|+||+++.... .+..+..
T Consensus 79 ~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~-~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~----~~~~~~~ 153 (388)
T PLN02511 79 PDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSD-DSYVRHMLLRARSKGWRVVVFNSRGCADSPVT----TPQFYSA 153 (388)
T ss_pred CCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCC-CHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC----CcCEEcC
Confidence 455566654443321112345689999999765532 234 3456667789999999999996543211 1111122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCc--eeEEEecCCccchhhhhc--CCCCC---cchh
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVG--TTDIP---DWCY 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~p~~~~~~~~~--~~~~~---~~~~ 667 (771)
...+|+.++++++..+. ...++.++||||||.+++.++.++++. +.+++++++..+...... ..... ...+
T Consensus 154 ~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~~~ 231 (388)
T PLN02511 154 SFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDKAL 231 (388)
T ss_pred CchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHHHH
Confidence 34789999999998763 346899999999999999999999876 677776666544311000 00000 0000
Q ss_pred h-------h----hcc------------C-CCC--------CcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCC
Q 004149 668 V-------E----SYG------------S-KGK--------DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 668 ~-------~----~~~------------~-~~~--------~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
. . .+. . ... ....+.. ...+.|...++...+.+|++|+|+|+|++|
T Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~dD 309 (388)
T PLN02511 232 AKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAAND 309 (388)
T ss_pred HHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcCCC
Confidence 0 0 000 0 000 0000001 111223456677788999999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh-----HHHHHHHHHHHHHHh
Q 004149 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-----FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-----~~~~~~i~~wl~~~l 770 (771)
+++|++.... .+.+....+++++++++||........ .-..+.+.+||+...
T Consensus 310 pi~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 310 PIAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred CcCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9998764321 122233458999999999975533221 124577888887653
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=163.64 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=127.9
Q ss_pred CcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 537 DPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|.||++||.+.... +..+...+..+++.||.|+++|+|| +|.+..............+|+.+.++.+ +.
T Consensus 30 ~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~ 100 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVNARAVKGLMDAL------DI 100 (282)
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCcCcccccchhHHHHHHHHHHc------CC
Confidence 367999999654421 1122234556778899999999999 4444321100111111234444444432 45
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCC------------CCcchhhhhccCCC-CCcCCC-
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKG-KDSFTE- 681 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~- 681 (771)
+++.++||||||.+++.++.++|++++++|+.+|............ .........+.... ......
T Consensus 101 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (282)
T TIGR03343 101 EKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLIT 180 (282)
T ss_pred CCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCc
Confidence 7899999999999999999999999999999887421100000000 00000000000000 000000
Q ss_pred -----------CCChhhHHHHh---------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 682 -----------SPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 682 -----------~~~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.........+. ..+....+.++++|+|+++|++|.+++++.++++.+.+. ++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~ 256 (282)
T TIGR03343 181 EELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHV 256 (282)
T ss_pred HHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEE
Confidence 00000000110 011123467889999999999999999988888877765 378899
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
++++||... .+....+.+.+.+||+
T Consensus 257 i~~agH~~~-~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 257 FSRCGHWAQ-WEHADAFNRLVIDFLR 281 (282)
T ss_pred eCCCCcCCc-ccCHHHHHHHHHHHhh
Confidence 999999876 4445578889999985
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-16 Score=162.92 Aligned_cols=245 Identities=13% Similarity=0.148 Sum_probs=145.0
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--------------------cc----hHHHHHHHHCCcEE
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------SY----SKSLAFLSSVGYSL 569 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--------------------~~----~~~~~~la~~G~~V 569 (771)
.+.+|..|....+.|+ .++.+|+++||.+...... .| ...+..|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 3457888888888774 2457999999944332111 11 35688999999999
Q ss_pred EEECCCCCCCCChhhhhcCCCC--ccccchhhHHHHHHHHHHc------------------CCCCCCeEEEEEcChhHHH
Q 004149 570 LIVNYRGSLGFGEEALQSLPGK--VGSQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGFL 629 (771)
Q Consensus 570 ~~~d~rG~~~~g~~~~~~~~~~--~~~~~~~D~~~~i~~l~~~------------------~~~d~~ri~l~G~S~GG~~ 629 (771)
+++|+||.|...... ...+. ....-++|+...++.+.+. ..-...+++|+||||||.+
T Consensus 78 ~~~D~rGHG~S~~~~--~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 78 YGLDLQGHGESDGLQ--NLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred EEecccccCCCcccc--ccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 999999954432110 00111 1112256777777766541 0011357999999999999
Q ss_pred HHHHHHhCCC--------ceeEEEecCCccchhhhhcC--CCCCcch--hh---hhccC--------------CCCCcC-
Q 004149 630 TTHLIGQAPD--------KFVAAAARNPLCNLALMVGT--TDIPDWC--YV---ESYGS--------------KGKDSF- 679 (771)
Q Consensus 630 a~~~a~~~p~--------~~~a~v~~~p~~~~~~~~~~--~~~~~~~--~~---~~~~~--------------~~~~~~- 679 (771)
++.++.++++ .++++|+.+|.+.+...... ...+.+. .. ..+.. .....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIK 235 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHh
Confidence 9998865432 58888888887543110000 0000000 00 00000 000000
Q ss_pred ------CCCCChhhHHHHhhcCc--cccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 680 ------TESPSVEDLTRFHSKSP--ISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 680 ------~~~~~~~~~~~~~~~sp--~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
...........+..... ...+.++ ++|+|+++|++|.+++++.++.+++.+.. .++++.++++++|.+
T Consensus 236 ~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~i 313 (332)
T TIGR01607 236 FDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHVI 313 (332)
T ss_pred cCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCCC
Confidence 00001111111111110 1133445 68999999999999999998888776643 246888999999998
Q ss_pred CCCCChHHHHHHHHHHHH
Q 004149 750 ERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl~ 767 (771)
.......++++.+.+||+
T Consensus 314 ~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 314 TIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ccCCCHHHHHHHHHHHhh
Confidence 877667789999999986
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=162.37 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=137.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
....|+||++||.++..........+..|+++||.|+++|+||.++..... .........+|+..+++++.++.
T Consensus 55 ~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~-- 128 (324)
T PRK10985 55 ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIYHSGETEDARFFLRWLQREF-- 128 (324)
T ss_pred CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceECCCchHHHHHHHHHHHHhC--
Confidence 345799999999765532222345778899999999999999965432111 11111234789999999998763
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCc--eeEEEecCCccchhhhhcC--CC---CCcchhh-----------hhccC--
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGT--TD---IPDWCYV-----------ESYGS-- 673 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~p~~~~~~~~~~--~~---~~~~~~~-----------~~~~~-- 673 (771)
...+++++||||||.+++.+++++++. +.++|++++..++...... .. .....+. ..+..
T Consensus 129 ~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 208 (324)
T PRK10985 129 GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTL 208 (324)
T ss_pred CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346799999999999888888776543 7777777776553211000 00 0000000 00000
Q ss_pred ------------------CCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004149 674 ------------------KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 674 ------------------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
.....+.+. ....+.+...++...+.++++|+|+++|++|++++++....+.+ ...
T Consensus 209 ~~~~~~~~~~~~~~~fd~~~~~~~~g~--~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~----~~~ 282 (324)
T PRK10985 209 PINLAQLKSVRRLREFDDLITARIHGF--ADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPES----LPP 282 (324)
T ss_pred cCCHHHHhcCCcHHHHhhhheeccCCC--CCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHH----hCC
Confidence 000000011 11223344556666788999999999999999998766555432 223
Q ss_pred CEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHHh
Q 004149 736 ETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l 770 (771)
++++++++++||..... ....-.-+.+.+||+..+
T Consensus 283 ~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 283 NVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 58889999999974432 122234467888987664
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.4e-16 Score=158.30 Aligned_cols=229 Identities=12% Similarity=0.139 Sum_probs=137.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++++.... +...+.||++||.+.+ ...|...+..|.+ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~~~~~~~~~~~~-----~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~-----~~~~ 73 (276)
T TIGR02240 10 DGQSIRTAVRPG-----KEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPG---VGGSSTPR-----HPYR 73 (276)
T ss_pred CCcEEEEEEecC-----CCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCC---CCCCCCCC-----CcCc
Confidence 566676655321 1223679999996554 3467777777754 69999999999 55442111 1123
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-------CCCCCcc---h
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDW---C 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------~~~~~~~---~ 666 (771)
.+++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++......... ....... .
T Consensus 74 ~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T TIGR02240 74 FPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPS 151 (276)
T ss_pred HHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccc
Confidence 44444444444443 2346799999999999999999999999999999987653210000 0000000 0
Q ss_pred ----h-hhhccCC------CCCc----CCCCCChhhHHH---HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004149 667 ----Y-VESYGSK------GKDS----FTESPSVEDLTR---FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 667 ----~-~~~~~~~------~~~~----~~~~~~~~~~~~---~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~ 728 (771)
. ...+... .... ............ .........+.++++|+|+++|++|+.+|++.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~ 231 (276)
T TIGR02240 152 HGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAW 231 (276)
T ss_pred cccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHH
Confidence 0 0000000 0000 000000000000 01111224467889999999999999999998888877
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
.+.. .+++++++ ||.... +...++.+.+.+|+++.
T Consensus 232 ~~~~----~~~~~i~~-gH~~~~-e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 232 RIPN----AELHIIDD-GHLFLI-TRAEAVAPIIMKFLAEE 266 (276)
T ss_pred hCCC----CEEEEEcC-CCchhh-ccHHHHHHHHHHHHHHh
Confidence 7653 57778875 998764 45568899999999864
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=162.36 Aligned_cols=219 Identities=16% Similarity=0.154 Sum_probs=132.3
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--CccccchhhHHHHHHHHHHcCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--KVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~--~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
|+||++||.+.+ ...|...+..|+.. |.|+++|+||. |.+....... .......+++...+..+++.. ..
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG~---G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l--~~ 101 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLGY---GYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV--VG 101 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCCC---CCCCCCccccccccccCCHHHHHHHHHHHHHHh--cC
Confidence 789999997765 45788888888776 79999999994 4442211000 001234555555555554432 24
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC---------------CCCCc-chhhh----------
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT---------------TDIPD-WCYVE---------- 669 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~---------------~~~~~-~~~~~---------- 669 (771)
+++.|+||||||.+++.++.++|++++++|+.++.......... ..... ..+..
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKN 181 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHH
Confidence 78999999999999999999999999999998875321000000 00000 00000
Q ss_pred ----hccCC-CC-----CcCC---CCCC-hhhHHHHhhc----CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 670 ----SYGSK-GK-----DSFT---ESPS-VEDLTRFHSK----SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 670 ----~~~~~-~~-----~~~~---~~~~-~~~~~~~~~~----sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
.+... .. ..+. ..+. ......+... .....+.++++|+|+++|++|..+|.+.++.+.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~- 260 (294)
T PLN02824 182 ILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD- 260 (294)
T ss_pred HHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC-
Confidence 00000 00 0000 0000 0000011111 112346788999999999999999988776643332
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
...++++++++||.... +...++...+.+||+++
T Consensus 261 ---~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 ---AVEDFIVLPGVGHCPQD-EAPELVNPLIESFVARH 294 (294)
T ss_pred ---CccceEEeCCCCCChhh-hCHHHHHHHHHHHHhcC
Confidence 23688999999997764 55568889999999864
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-16 Score=158.15 Aligned_cols=216 Identities=15% Similarity=0.228 Sum_probs=132.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.+.|+||++||.+.+ ...|...+..|. +||.|+++|+||.+.+... . ......++..+.+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~-----~--~~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGE-----L--PPGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCCCCCCCC-----C--cccCCHHHHHHHHHHHHHH--hC
Confidence 346889999997654 345666666664 5799999999995443221 0 1112344544444444443 24
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh-----------cCCCCCcc-------hhhhhccCCCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDW-------CYVESYGSKGK 676 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~ 676 (771)
.+++.++||||||.+++.++.++|+.++++|+.++........ .......+ .+...+.....
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 5789999999999999999999999999999888754321000 00000000 00000000000
Q ss_pred --------CcCCCC-CChh---hHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 677 --------DSFTES-PSVE---DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 677 --------~~~~~~-~~~~---~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
...... .... ....+...+....+.++++|+|+++|++|..+|++.+.++++.+.+ .+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN----AQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCC----ceEEEECC
Confidence 000000 0000 0111122233345778899999999999999999998888776643 67888999
Q ss_pred CCccCCCCCChHHHHHHHHHHHH
Q 004149 745 DVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+||.+.. +...++.+.+.+||+
T Consensus 235 ~gH~~~~-~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNV-TDPETFNRALLDFLK 256 (257)
T ss_pred CCCCccc-cCHHHHHHHHHHHhc
Confidence 9998764 455678888888885
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=148.36 Aligned_cols=224 Identities=18% Similarity=0.212 Sum_probs=138.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+....|+|+++||.|.. +..|+.++..|+.+||.|+++|+|| ||.+.. +.......+..+...+..+++.-
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~---P~~~~~Yt~~~l~~di~~lld~L- 110 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDA---PPHISEYTIDELVGDIVALLDHL- 110 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCC---CCCcceeeHHHHHHHHHHHHHHh-
Confidence 44567999999998876 5578899999999999999999999 665532 33333334444444444444431
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch-----hhhhcCCCCCcch---hhhhccCC----------
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----ALMVGTTDIPDWC---YVESYGSK---------- 674 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-----~~~~~~~~~~~~~---~~~~~~~~---------- 674 (771)
.-+|+.|+||+||+.+|..++..+|+++.+.|+.+..... ......--..++. +.+....+
T Consensus 111 -g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~ 189 (322)
T KOG4178|consen 111 -GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEM 189 (322)
T ss_pred -ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHH
Confidence 2589999999999999999999999999999987754430 0000000000000 00000000
Q ss_pred --------CCCcCCCC----------CChhh-------------------HHHHhhcCc--cccccCCCCcEEEEeeCCC
Q 004149 675 --------GKDSFTES----------PSVED-------------------LTRFHSKSP--ISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 675 --------~~~~~~~~----------~~~~~-------------------~~~~~~~sp--~~~~~~i~~P~Lii~G~~D 715 (771)
........ ..+++ ...+....+ .....++++|++++.|+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D 269 (322)
T KOG4178|consen 190 LVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLD 269 (322)
T ss_pred hHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCc
Confidence 00000000 00111 111222221 3345678899999999999
Q ss_pred CccCcHHHHHHHHH-HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 716 LRVPVSNGLQYARA-LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~-l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
...+...-.+.++. +... .+.++++++||.... +...++.+.++.||++..
T Consensus 270 ~v~~~p~~~~~~rk~vp~l---~~~vv~~~~gH~vqq-e~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 270 PVLPYPIFGELYRKDVPRL---TERVVIEGIGHFVQQ-EKPQEVNQAILGFINSFS 321 (322)
T ss_pred ccccchhHHHHHHHhhccc---cceEEecCCcccccc-cCHHHHHHHHHHHHHhhc
Confidence 99887633333333 3322 367899999997764 445699999999999864
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=154.12 Aligned_cols=215 Identities=17% Similarity=0.158 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC-Ce
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 617 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~-~r 617 (771)
+||++||.+.+ ...|...+..|++.||.|+++|+||. |.+... .. .....+++.+.+..+++. .+. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G~---G~S~~~--~~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTGA---GISLTD--SN--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCcC---CCCCCC--cc--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999997765 45688888999889999999999994 443211 11 112344444444444443 222 58
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc---ch---hhhh--cCCCCCcchh--hhhccCC---------CC-C
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NL---ALMV--GTTDIPDWCY--VESYGSK---------GK-D 677 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~---~~---~~~~--~~~~~~~~~~--~~~~~~~---------~~-~ 677 (771)
+.++||||||.+++.++.++|++++++|+.++.. .. .... .......|.. ....... .. .
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999999887642 10 0000 0000000000 0000000 00 0
Q ss_pred cCCCCCChhhHHHH---hhcCcc----------ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 678 SFTESPSVEDLTRF---HSKSPI----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 678 ~~~~~~~~~~~~~~---~~~sp~----------~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.+......+..... ....+. ..+.++++|+|+++|++|..+|+..++.+.+.+.. .+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEecC
Confidence 00000000000000 000000 12346899999999999999999888887776654 68889999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHH
Q 004149 745 DVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+||.... +...++...+.+|++..
T Consensus 230 ~GH~~~~-e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 230 SDHSAFF-SVPTTLFQYLLQAVSSL 253 (255)
T ss_pred CCCchhh-cCHHHHHHHHHHHHHHh
Confidence 9998874 44557888888887653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-15 Score=146.69 Aligned_cols=334 Identities=15% Similarity=0.157 Sum_probs=205.2
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecC---CC
Q 004149 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP---EN 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~---~~ 121 (771)
++|.+ -|.+|.|+.. -++|.+++ ..+++++||+.- +-+..|.|||||+++||.+-. ..
T Consensus 44 l~PDI--~GD~IiFt~~----------DdlWe~sl--k~g~~~ritS~l-----GVvnn~kf~pdGrkvaf~rv~~~ss~ 104 (668)
T COG4946 44 LNPDI--YGDRIIFTCC----------DDLWEYSL--KDGKPLRITSGL-----GVVNNPKFSPDGRKVAFSRVMLGSSL 104 (668)
T ss_pred cCCcc--cCcEEEEEec----------hHHHHhhh--ccCCeeEEeccc-----ceeccccCCCCCcEEEEEEEEecCCC
Confidence 35543 5778899754 27888766 344778888663 668899999999999995532 22
Q ss_pred CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC--------------CCC
Q 004149 122 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--------------GST 186 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~--------------~~~ 186 (771)
....+|.+. .+|+.+++|....... .-.-|+|||+.|++.-... +-. .|.. ..+
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfGr~fT---------~VaG~~~dg~iiV~TD~~t-PF~-q~~~lYkv~~dg~~~e~LnlG 173 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFGRRFT---------RVAGWIPDGEIIVSTDFHT-PFS-QWTELYKVNVDGIKTEPLNLG 173 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEeccccc---------eeeccCCCCCEEEEeccCC-Ccc-cceeeeEEccCCceeeeccCC
Confidence 556799998 8899999998732211 2345999999887742111 100 0000 000
Q ss_pred C------------CCCCCccCCCCCC------------------------------------cc------------cccC
Q 004149 187 K------------GGSSDKDCNSWKG------------------------------------QG------------DWEE 206 (771)
Q Consensus 187 ~------------~~~~~~~~~~~~~------------------------------------~~------------~~~~ 206 (771)
+ .+....+-+.|++ .- .|+-
T Consensus 174 pathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSv 253 (668)
T COG4946 174 PATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSV 253 (668)
T ss_pred ceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEe
Confidence 0 0000001111110 00 0111
Q ss_pred Cc----------------------CcccCCccCceEEEEEccCCceeecc-CCCCCCccceE----------EEec-CCC
Q 004149 207 DW----------------------GETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQV----------VWAP-LNE 252 (771)
Q Consensus 207 d~----------------------g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~----------~wsp-Dg~ 252 (771)
|. |...+.....+||++|.++..++.|. +.|-.....++ -|++ +|.
T Consensus 254 dldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd 333 (668)
T COG4946 254 DLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD 333 (668)
T ss_pred ccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc
Confidence 11 33334444578999999888887774 22221101010 1332 566
Q ss_pred CCccEEEEEeecCc-------------ceeeeeee------------eccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004149 253 GLHQYLVFVGWSSE-------------TRKLGIKY------------CYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 253 ~~~~~l~~~~~~~~-------------~~~~g~~~------------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
. |++++.-.. ..+.|..| -.+....|-++|. .++
T Consensus 334 ~----ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~-----------------~~~ 392 (668)
T COG4946 334 Y----IALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK-----------------DGG 392 (668)
T ss_pred E----EEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec-----------------CCc
Confidence 6 777763211 11122211 1111224555565 788
Q ss_pred cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004149 308 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 308 ~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
+.+++....+.+.....|||||+++..- + ..+||++|+++|..+.+......
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaN-d----------r~el~vididngnv~~idkS~~~----------------- 444 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVAN-D----------RFELWVIDIDNGNVRLIDKSEYG----------------- 444 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEc-C----------ceEEEEEEecCCCeeEecccccc-----------------
Confidence 8889988889999999999999876543 3 36899999999987665444322
Q ss_pred cCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCe
Q 004149 388 SSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 459 (771)
Q Consensus 388 ~~~~~~~~~s~dg~~l~~~~~~~-~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~ 459 (771)
-+..+.|+|+++.|+++-..+ -..+|-.+|+.++++..+|.+.+....++|+||+++|+|++...-.|+.
T Consensus 445 --lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~ 515 (668)
T COG4946 445 --LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSN 515 (668)
T ss_pred --eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCC
Confidence 234678999999888766533 2345777799999999999877655668999999999999877766653
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-15 Score=154.40 Aligned_cols=216 Identities=16% Similarity=0.221 Sum_probs=130.1
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.+ .|+++|+|| +|.+.... ......+..+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G---~G~S~~~~-----~~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIG---MGASDKPD-----IDYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCC---CCCCCCCC-----CCCCHHHHHHHHHHHHHH--hCCC
Confidence 3789999997765 457778888888875 999999999 44442211 112344444444444443 2347
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-------------hcCCCCCcchhh--hhccCCCC-CcCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGTTDIPDWCYV--ESYGSKGK-DSFT 680 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~~-~~~~ 680 (771)
++.++|||+||.+++.++.++|++++++|+.++....... ............ ..+..... ..+.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSIL 173 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCccc
Confidence 8999999999999999999999999999998874321000 000000000000 00000000 0000
Q ss_pred CCCChhhHHHH-----------------hhcC--------------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004149 681 ESPSVEDLTRF-----------------HSKS--------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 681 ~~~~~~~~~~~-----------------~~~s--------------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~ 729 (771)
.....+....+ .... ....+.++++|+|+++|++|..+++....++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 253 (295)
T PRK03592 174 RPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRS 253 (295)
T ss_pred ccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHH
Confidence 00000100000 0000 0122467899999999999999966666565544
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+.. +.++.+++++||.... +...++.+.+.+|+++.
T Consensus 254 ~~~---~~~~~~i~~~gH~~~~-e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 254 WPN---QLEITVFGAGLHFAQE-DSPEEIGAAIAAWLRRL 289 (295)
T ss_pred hhh---hcceeeccCcchhhhh-cCHHHHHHHHHHHHHHh
Confidence 332 3688899999998774 45668889999999875
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=154.49 Aligned_cols=216 Identities=16% Similarity=0.160 Sum_probs=127.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-ccchhhHHHHHHHHHHcC
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~~ 611 (771)
+....|+||++||.+.. ...|...+..|+ .+|.|+++|+||.| .+.. ..... ....+|+.+.++++
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G---~s~~---~~~~~~~~~~~d~~~~l~~l---- 78 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRNHG---LSPR---DPVMNYPAMAQDLLDTLDAL---- 78 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCCCC---CCCC---CCCCCHHHHHHHHHHHHHHc----
Confidence 44556889999997665 345666777775 47999999999944 3321 11111 11234444444432
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc-chh-----hh---h-c--CCCCCcchh-hh----hccCC
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA-----LM---V-G--TTDIPDWCY-VE----SYGSK 674 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~-----~~---~-~--~~~~~~~~~-~~----~~~~~ 674 (771)
..+++.|+||||||.+++.++.++|++++++|+.++.. ... .. . . ......+.. .. .....
T Consensus 79 --~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (255)
T PRK10673 79 --QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEE 156 (255)
T ss_pred --CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCH
Confidence 34679999999999999999999999999999864321 100 00 0 0 000000000 00 00000
Q ss_pred C-----CCcCCCCC----ChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 675 G-----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 675 ~-----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
. ...+.... .......+........+..+++|+|+++|++|..++.+..+.+.+.+. ++++.+++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~ 232 (255)
T PRK10673 157 GVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGA 232 (255)
T ss_pred HHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCC
Confidence 0 00000000 000011111111223356678999999999999998776666655543 4788999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004149 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+|... .+....+.+.+.+||.+
T Consensus 233 gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 233 GHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred CCeee-ccCHHHHHHHHHHHHhc
Confidence 99765 44456788999999875
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=168.90 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=101.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.||.+|.+.+|+|+ ..++.|+||++||.+.... ..........|+++||+|+++|+||.++++..+. ..+
T Consensus 4 ~DG~~L~~~~~~P~---~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~~ 75 (550)
T TIGR00976 4 RDGTRLAIDVYRPA---GGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LLG 75 (550)
T ss_pred CCCCEEEEEEEecC---CCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ecC
Confidence 47889999999997 3457899999998554321 0111224568899999999999999766544321 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 654 (771)
....+|+.++++|+.++++.+ .+|+++|+|+||.+++.++..+|+.++++|..++..++.
T Consensus 76 ~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 76 SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 456899999999999987665 699999999999999999999999999999999887754
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=140.49 Aligned_cols=145 Identities=21% Similarity=0.372 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
+||++||+... ...|...++.|+++||.|+.+|+|+.+.. ....++.++++++.... .+.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDS--------------DGADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTS--------------HHSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCcc--------------chhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997765 45678889999999999999999984432 11235556666654322 278999
Q ss_pred EEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc
Q 004149 619 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 698 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 698 (771)
+++|||+||.+++.++.+. ..++++|+.+|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999999888310 01
Q ss_pred cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 699 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 699 ~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+.+.+.|+|+++|++|..+++++.++++++++ .+.+++++++++|+
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 123456699999999999999999999999887 46899999999995
|
... |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-15 Score=142.11 Aligned_cols=303 Identities=21% Similarity=0.279 Sum_probs=182.0
Q ss_pred cCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 92 APFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 92 ~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
+.++...+.+...+|||+|++||.-+. .....+|+-.....+..+.... .|..+++|||||++||..+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsG-----D~TvR~WD~~TeTp~~t~KgH~-------~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSG-----DTTVRLWDLDTETPLFTCKGHK-------NWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCC-----CceEEeeccCCCCcceeecCCc-------cEEEEEEECCCcchhhccc
Confidence 345555667889999999999986432 3366777433334444443322 2568999999999999988
Q ss_pred cCCCCCCCCccCCC-CCCCCCCccCCCCCCcccccC-----CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceE
Q 004149 172 EEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEE-----DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQV 245 (771)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~ 245 (771)
.+.... .|+... ...+..+..+..|+....|.| .-+......+++.+.+||+..+...... ......+.-+
T Consensus 177 ~dg~I~--lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCv 253 (480)
T KOG0271|consen 177 KDGSIR--LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCV 253 (480)
T ss_pred cCCeEE--EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEE
Confidence 776543 455333 345677888888987777644 3345556667899999999988766652 3344567778
Q ss_pred EEecCCCCCccEEEEEeecCccee----eeeeeeccCCce---eEEEecc-------------cc-cchh----------
Q 004149 246 VWAPLNEGLHQYLVFVGWSSETRK----LGIKYCYNRPCA---LYAVRVS-------------LY-KSEA---------- 294 (771)
Q Consensus 246 ~wspDg~~~~~~l~~~~~~~~~~~----~g~~~~~~~~~~---l~~~d~~-------------~~-~~~~---------- 294 (771)
.|- |.. ++|++..+..-+ ..-..|..-.++ |=.+++. +. ++..
T Consensus 254 rwG--G~g----liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 254 RWG--GEG----LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred EEc--CCc----eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 885 344 777664333110 000000000000 0011111 00 0000
Q ss_pred hhhhhhcC------------------CCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 295 SELELKES------------------SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 295 ~~~~~~~~------------------~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
++.-.++. ........+++.+..-+..+.|||||++||-.+-+. .+.+|+-
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-----------SVkLW~g 396 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-----------SVKLWDG 396 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-----------ceeeeeC
Confidence 00000000 111223456777777789999999999999988775 3777777
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCc
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNF 435 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~ 435 (771)
.+|+.... |.| +...++.++||.|++ |+++.+.+....+|.+. +.++..=.+ ....+
T Consensus 397 ~tGk~las------------------fRG-Hv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~--tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 397 RTGKFLAS------------------FRG-HVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVR--TKKLKQDLPGHADEV 454 (480)
T ss_pred CCcchhhh------------------hhh-ccceeEEEEeccCcc-EEEEcCCCceEEEEEee--eeeecccCCCCCceE
Confidence 77765221 222 112356889999986 77888878777777654 556554333 33345
Q ss_pred eeeEEeecCCEEE
Q 004149 436 SWSLLTLDGDNII 448 (771)
Q Consensus 436 ~~~~~s~d~~~l~ 448 (771)
....|+|||..++
T Consensus 455 f~vDwspDG~rV~ 467 (480)
T KOG0271|consen 455 FAVDWSPDGQRVA 467 (480)
T ss_pred EEEEecCCCceee
Confidence 6678899998765
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-15 Score=156.22 Aligned_cols=219 Identities=15% Similarity=0.241 Sum_probs=129.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+... .. .....++..+.+..+.+. ...+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~~---~~-~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLG---FGASDKP---PG-FSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCC---CC-ccccHHHHHHHHHHHHHH--hcCC
Confidence 4789999997655 4467778888865 79999999999 5544211 00 112334444443333333 2346
Q ss_pred eEEEEEcChhHHHHHHHHH-hCCCceeEEEecCCccchhhhhcCCC------CC-cch-------------hhhhcc-CC
Q 004149 617 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTD------IP-DWC-------------YVESYG-SK 674 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~------~~-~~~-------------~~~~~~-~~ 674 (771)
++.|+||||||.+++.++. .+|++++++|+.++............ .+ .|. ...... ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999998886 46999999999887532100000000 00 000 000000 00
Q ss_pred CC-----CcCCC-----------------CCC-hhhHHHHhh----cCccccccCCCCcEEEEeeCCCCccCcHHH-HHH
Q 004149 675 GK-----DSFTE-----------------SPS-VEDLTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQY 726 (771)
Q Consensus 675 ~~-----~~~~~-----------------~~~-~~~~~~~~~----~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~-~~~ 726 (771)
.. ..+.. ... ......+.. .+....+.++++|+|+++|++|..+|++.. .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00 00000 000 000011111 111234678899999999999999998743 234
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 727 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++.+.+.-.+.++++++++||... .+...++.+.+.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 455554445689999999999866 45566889999999976
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=154.83 Aligned_cols=213 Identities=15% Similarity=0.167 Sum_probs=127.9
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|. .||.|+++|+||.+. +.. . ......++..+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~---s~~---~--~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRGHGL---SDA---P--EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCCCCC---CCC---C--CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999996554 345666666764 689999999999543 321 1 1122455555555555554 245
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc----CCCCCcchhh---hh-ccCCCCCcCCCCCC--h
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWCYV---ES-YGSKGKDSFTESPS--V 685 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~~~~---~~-~~~~~~~~~~~~~~--~ 685 (771)
+++.++|||+||.+++.++.++|+.++++++.++......... .......... .. ........+..... .
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 7899999999999999999999999999888776432110000 0000000000 00 00000000000000 0
Q ss_pred hhH----------------HHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 686 EDL----------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 686 ~~~----------------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
... ..+...+....+.++++|+|+++|++|..+|.+....+.+.+. ..++.++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 000 0111122223456788999999999999999988777766654 36888999999987
Q ss_pred CCCCChHHHHHHHHHHH
Q 004149 750 ERPQSDFESFLNIGLWF 766 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl 766 (771)
... ....+.+.+.+||
T Consensus 235 ~~~-~p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CVE-QPEAFNAALRDFL 250 (251)
T ss_pred ccc-ChHHHHHHHHHHh
Confidence 643 3456677777776
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-16 Score=152.62 Aligned_cols=189 Identities=22% Similarity=0.316 Sum_probs=123.0
Q ss_pred EEEEcCCCCCCCCCc-chHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc---CCCC
Q 004149 540 IVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 614 (771)
Q Consensus 540 vv~~HGg~~~~~~~~-~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 614 (771)
||++|||++...... ....+..+++ .|+.|+.+|||-+++ ......++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 799999998764433 3345566664 999999999997544 23345689999999999987 3478
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCC----CceeEEEecCCccch-h----hhh---cCCCCCcc--hhhhhccCCCCCcCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNPLCNL-A----LMV---GTTDIPDW--CYVESYGSKGKDSFT 680 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~p~~~~-~----~~~---~~~~~~~~--~~~~~~~~~~~~~~~ 680 (771)
+++|+|+|+|.||.+++.++.... ..++++++.+|+.++ . .+. ...+.+-+ .....+. ..+.
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 145 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFW----KLYL 145 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHH----HHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccc----cccc
Confidence 999999999999999999987432 248999999998765 1 110 00000000 0000000 0000
Q ss_pred CCCChhhHHHHhhcCccccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 681 ESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
. .........+|+.. ..+ -+|++|++|+.|..+ .++..|+++|++.|++++++++++..|.+.
T Consensus 146 ~----~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 146 P----GSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp S----TGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred c----cccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 0 00001123455544 122 368999999999887 688999999999999999999999999863
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=158.74 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=140.0
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHH---HCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la---~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
....+.++++....|++ ....|.||++||.+... ..|.. .+..|+ +.+|.|+++|+|| +|.+...
T Consensus 181 ~~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~p--- 249 (481)
T PLN03087 181 LSSSNESLFVHVQQPKD---NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPKP--- 249 (481)
T ss_pred EeeCCeEEEEEEecCCC---CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcCC---
Confidence 34445678877777763 23347899999976552 34543 334444 4799999999999 5544211
Q ss_pred CCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-------h-h-cC
Q 004149 590 GKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-------M-V-GT 659 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-------~-~-~~ 659 (771)
.. .....++..+.+. .+.+. .+.+++.++||||||.+++.++.++|++++++|+.+|...... . . ..
T Consensus 250 ~~-~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~ 326 (481)
T PLN03087 250 AD-SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKV 326 (481)
T ss_pred CC-CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHh
Confidence 00 1123555555552 44444 2457899999999999999999999999999999886432110 0 0 00
Q ss_pred CCCCcch----------hhhhccCCC----------CCc----CCCCCChh-hHH---------------HHhhcC----
Q 004149 660 TDIPDWC----------YVESYGSKG----------KDS----FTESPSVE-DLT---------------RFHSKS---- 695 (771)
Q Consensus 660 ~~~~~~~----------~~~~~~~~~----------~~~----~~~~~~~~-~~~---------------~~~~~s---- 695 (771)
.....|. ..+...... ... ........ ..+ .+....
T Consensus 327 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l 406 (481)
T PLN03087 327 APRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKL 406 (481)
T ss_pred cccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhh
Confidence 0000000 000000000 000 00000000 000 000000
Q ss_pred -c-c-ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 696 -P-I-SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 696 -p-~-~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
. . ....++++|+|+++|++|..+|++.++.+.+.+.. +++++++++||.....+....+...+.+|.+.
T Consensus 407 ~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 407 DGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVPR----ARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCCC----CEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 0 0 11236899999999999999999998888777754 78999999999866545556788888888753
|
|
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=154.89 Aligned_cols=238 Identities=13% Similarity=0.147 Sum_probs=140.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+|..+.++++.|.+ . +.+.||++|||+.... ...+...++.|+++||.|+++|+||. |.+... .. ..
T Consensus 9 ~~~~~l~g~~~~p~~---~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~---G~S~~~--~~-~~ 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA---S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGM---GDSEGE--NL-GF 78 (274)
T ss_pred cCCcEEEEEEEcCCC---C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCC---CCCCCC--CC-CH
Confidence 356789999999863 2 2356777787654321 22345567889999999999999994 443211 01 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
....+|+.++++++.++. ...++|+++|||+||.+++.++.. +..++++|+.+|............. ...+......
T Consensus 79 ~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~-~~~~~~~~~~ 155 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRI-RHYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHH-HHHHHHHHhC
Confidence 123678999999987652 123679999999999999988765 5679999999987431110000000 0000000000
Q ss_pred -CCCCc-CCCCCChh-hHHHHhh----c---C-----------ccccccCCCCcEEEEeeCCCCccCcHHH-----HHHH
Q 004149 674 -KGKDS-FTESPSVE-DLTRFHS----K---S-----------PISHISKVKTPTIFLLGAQDLRVPVSNG-----LQYA 727 (771)
Q Consensus 674 -~~~~~-~~~~~~~~-~~~~~~~----~---s-----------p~~~~~~i~~P~Lii~G~~D~~vp~~~~-----~~~~ 727 (771)
..... ..+..... ....+.. . . -...+.++++|+|+++|+.|...+.... ..+.
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~ 235 (274)
T TIGR03100 156 ADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFADSVLGEPAWR 235 (274)
T ss_pred hHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHHHHhccChhhH
Confidence 00000 00000000 0000000 0 0 0123456789999999999987531110 1222
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+.+.. ..+++..+++++|.+.....+.++...|.+||++
T Consensus 236 ~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 236 GALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 22221 3588999999999887777778899999999963
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=152.43 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=129.6
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|++ +|.|+++|+||. |.+... ......++++.+.+..+++.. +.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~---G~S~~~----~~~~~~~~~~~~~l~~~i~~~--~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPGH---GFTRAP----FRFRFTLPSMAEDLSALCAAE--GL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCCC---CCCCCc----cccCCCHHHHHHHHHHHHHHc--CC
Confidence 35889999997654 4467777777755 699999999994 443211 111234556655555555542 34
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh---------h---cCCCCC-cchhhhhccCCCCCcCC--
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------V---GTTDIP-DWCYVESYGSKGKDSFT-- 680 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------~---~~~~~~-~~~~~~~~~~~~~~~~~-- 680 (771)
+++.|+||||||.+++.++.++|++++++|+.++......- . ...... .+.............+.
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRD 174 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhc
Confidence 67899999999999999999999989988887765421100 0 000000 00000000000000000
Q ss_pred --CCCChhhH-----------------HHHhhcC---ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 681 --ESPSVEDL-----------------TRFHSKS---PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 681 --~~~~~~~~-----------------~~~~~~s---p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
........ ..+.... ....++++++|+|+++|++|..+|++.++.+.+.+.. ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~----~~ 250 (278)
T TIGR03056 175 TGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPT----AT 250 (278)
T ss_pred cccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccC----Ce
Confidence 00000000 0000000 1224567889999999999999999888887666543 68
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 739 VIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+..++++||.+... ...++.+.|.+||+
T Consensus 251 ~~~~~~~gH~~~~e-~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 251 LHVVPGGGHLVHEE-QADGVVGLILQAAE 278 (278)
T ss_pred EEEECCCCCccccc-CHHHHHHHHHHHhC
Confidence 88999999987644 45678888888874
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=156.11 Aligned_cols=222 Identities=18% Similarity=0.216 Sum_probs=140.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---------HHHHHHHCCcEEEEECCCCCCCCChhhhhc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---------SLAFLSSVGYSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---------~~~~la~~G~~V~~~d~rG~~~~g~~~~~~ 587 (771)
||.+|.+.+|+| +....++.|+||..|+-..... ..... ....|+++||+|+..|.||.++++..+..
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~-~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~- 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQ-TASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP- 77 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC--HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCC-cccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc-
Confidence 688999999999 4447889999999998442210 00110 11238999999999999998777665421
Q ss_pred CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-hhcCCCC----
Q 004149 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDI---- 662 (771)
Q Consensus 588 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~~~~~---- 662 (771)
....+.+|..++|+|+.++++. ..||+++|.|++|+.++.+|+..|..++|++...+..++.. .......
T Consensus 78 ----~~~~e~~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 78 ----MSPNEAQDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp ----TSHHHHHHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred ----CChhHHHHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 1566799999999999999754 47999999999999999999988889999999988777643 1111111
Q ss_pred --Ccch----hhhhccCCCC--------------------CcCCCCC--------ChhhHHHHhhcCccccccCCCCcEE
Q 004149 663 --PDWC----YVESYGSKGK--------------------DSFTESP--------SVEDLTRFHSKSPISHISKVKTPTI 708 (771)
Q Consensus 663 --~~~~----~~~~~~~~~~--------------------~~~~~~~--------~~~~~~~~~~~sp~~~~~~i~~P~L 708 (771)
..|. .......... ....... .......+...++...+.++++|+|
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l 232 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVL 232 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEE
Confidence 1120 0000000000 0000000 0001122334445556789999999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG 748 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 748 (771)
++.|-.|..+. ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 233 ~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 233 IVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred EecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999997766 88999999999988 6778888765 674
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=140.49 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=146.8
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
++|..+...+..++ ...+.|.||.+||-.++........++..+.++||.|+++|.||+++.-.. .+.-+-..
T Consensus 57 pdg~~~~ldw~~~p---~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~G 129 (345)
T COG0429 57 PDGGFIDLDWSEDP---RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHSG 129 (345)
T ss_pred CCCCEEEEeeccCc---cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccceeccc
Confidence 34444444444433 345669999999966655444444567788999999999999997654221 12222223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhH-HHHHHHHHhCCC-ceeEEEecCCccchhhhhcCCCCCcc-hhh----
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG-FLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDW-CYV---- 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG-~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~~~~~~~~~~-~~~---- 668 (771)
..+|+..+++++.+.. -+.++..+|.|+|| +++.+++.+..+ .+.|++..+-..|+.......+...+ .++
T Consensus 130 ~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~l 207 (345)
T COG0429 130 ETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYL 207 (345)
T ss_pred chhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHHH
Confidence 4699999999998864 36789999999999 555555543222 23444444433343211110010001 000
Q ss_pred ---------------------------------hhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCC
Q 004149 669 ---------------------------------ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 669 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
..+.........+. .+..+.|.+.|.+..+.+|++|+||||..+|
T Consensus 208 ~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf--~da~dYYr~aSs~~~L~~Ir~PtLii~A~DD 285 (345)
T COG0429 208 LRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGF--ADAEDYYRQASSLPLLPKIRKPTLIINAKDD 285 (345)
T ss_pred HHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCC--CcHHHHHHhccccccccccccceEEEecCCC
Confidence 00000001111122 2345677888999999999999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--CC-Ch-HHHHHHHHHHHHHHh
Q 004149 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER--PQ-SD-FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~-~~-~~~~~~i~~wl~~~l 770 (771)
++++++..-..... ....+.+...+-+||.-.. .. +. .-..+++.+||+.++
T Consensus 286 P~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 286 PFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred CCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 99987543332222 4556899999999995321 11 22 134578999999875
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-15 Score=144.92 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=113.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCC---CCCCh---hhhhcCCCCc-cccchhhHH---
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGS---LGFGE---EALQSLPGKV-GSQDVNDVL--- 601 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~V~~~d~rG~---~~~g~---~~~~~~~~~~-~~~~~~D~~--- 601 (771)
..+..|+||++||.+.+. ..+..... .+......++.++-+-. ...|. +|........ ...+.+++.
T Consensus 10 ~~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 356789999999965542 22222222 12235677777764310 11222 4433221111 111223333
Q ss_pred ----HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 602 ----TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 602 ----~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
+.++...+.+ ++++||+|+|+|+||.+++.++.++|..++++|+.++..-....
T Consensus 88 ~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 3333333333 89999999999999999999999999999999999886421100
Q ss_pred cCCCCCChhhHHHHhhcCccccccC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
. . ..... -++|++++||..|+++|.+.++..++.|++.+.++++..|++.+|.+. .
T Consensus 146 ------~-~-----------~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~ 202 (216)
T PF02230_consen 146 ------L-E-----------DRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----P 202 (216)
T ss_dssp ------C-H-----------CCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------H
T ss_pred ------c-c-----------ccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----H
Confidence 0 0 00011 168999999999999999999999999999999999999999999886 5
Q ss_pred HHHHHHHHHHHHHh
Q 004149 757 ESFLNIGLWFKKYC 770 (771)
Q Consensus 757 ~~~~~i~~wl~~~l 770 (771)
+.+..+.+||++++
T Consensus 203 ~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 203 EELRDLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhC
Confidence 77899999999874
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=138.25 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=116.3
Q ss_pred cEEEEEcCCCCCCCCCcch--HHHHHHHH--CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYS--KSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~--~~~~~la~--~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
|.||++||.+.+. ..|. .....+.+ .+|.|+++|+|| ++ +++.+.+..+.++.
T Consensus 2 p~illlHGf~ss~--~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSP--RSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCc--chHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHHc--
Confidence 6899999976653 3344 23455555 379999999998 32 23444555555542
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHh
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
+.+++.++|+|+||++++.++.++|. + +|+.+|..+... .......... .+.. ..+. ......+...
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~--~~~~~~~d~~ 126 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENEN----PYTG---QQYV--LESRHIYDLK 126 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCccc----ccCC---CcEE--EcHHHHHHHH
Confidence 34689999999999999999999883 3 467777766311 1100000000 0000 0000 0112223333
Q ss_pred hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 693 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 693 ~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
...+.. +. ...|++++||++|+.||++.+.++++. ++++++++++|.+... ++.++.+.+|+.
T Consensus 127 ~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 127 VMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred hcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 333322 33 567899999999999999999999884 3566889999999644 578888999875
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=153.64 Aligned_cols=222 Identities=17% Similarity=0.215 Sum_probs=126.8
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc-cchh-hHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~-~~~~-D~~~~i~~l~~~~~ 612 (771)
+..|+||++||.+.. ...|...+..|++ +|.|+++|+||.+.+.+. . ..... .... .+.+.+..+.+.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~---~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLGWGGSSRP---D--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCCCCCCCCC---C--cccccHHHHHHHHHHHHHHHHHH--
Confidence 356899999997654 3356666777765 599999999995443221 1 01110 1111 222233222222
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc----CCC-CCcch---------------------
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTD-IPDWC--------------------- 666 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~-~~~~~--------------------- 666 (771)
.+.+++.|+||||||++++.++.++|+.++++|+.+|......... ... ...|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 2456899999999999999999999999999998887531110000 000 00000
Q ss_pred ------hhhhccCCCC-CcCCC--CC--ChhhH------------------HHH-----hhcCcc-ccccCCCCcEEEEe
Q 004149 667 ------YVESYGSKGK-DSFTE--SP--SVEDL------------------TRF-----HSKSPI-SHISKVKTPTIFLL 711 (771)
Q Consensus 667 ------~~~~~~~~~~-~~~~~--~~--~~~~~------------------~~~-----~~~sp~-~~~~~i~~P~Lii~ 711 (771)
+...+..... ..... .. ..... ..+ ....+. ..+.++++|+++++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 0000000000 00000 00 00000 000 011222 34678899999999
Q ss_pred eCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 712 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 712 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|++|.+.+ ....++.+.+ +..+++++++++||... .++...+.+.+.+|++.+|+
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~ 387 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLS 387 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhcc
Confidence 99998664 5555544433 34578999999999766 44456888999999988763
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=150.88 Aligned_cols=262 Identities=18% Similarity=0.189 Sum_probs=166.4
Q ss_pred CCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 107 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 107 SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
||||++++|..+..+ ....+++.+ ..++.+++....... ..+.|||||+.|||+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765421 223455555 444444433321122 5899999999999983
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---------------C--Cccc
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---------------S--LSVG 243 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---------------~--~~~~ 243 (771)
..+||+.++.+++.++|+ ..+ + ....
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 368999999888888885 111 0 1234
Q ss_pred eEEEecCCCCCccEEEEEeecCcc-----------------eeeeeeeec----cCCceeEEEecccccchhhhhhhhcC
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSET-----------------RKLGIKYCY----NRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~-----------------~~~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
.+.|||||++ |+|....... ...-+.|+. |....|+++++
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 9998754431 111122211 23346888887
Q ss_pred CCCCCcceecC------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 303 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 303 ~~~~~~~~~lt------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++++...+. ........+.|++|++.|++....+. .....|.++|..++..+.+....
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~-------- 229 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEET-------- 229 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEE--------
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEec--------
Confidence 666543333 23445788999999997777666542 44677889998886654332111
Q ss_pred ccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc-eeeEEeecCCEEEEEEeCC
Q 004149 377 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~-~~~~~s~d~~~l~~~~s~~ 454 (771)
... |-.....+.|. +++..+++.+...|..+||.++.+++..++||.+...+ ....++.+++.|+|++...
T Consensus 230 ---~~~----Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 230 ---SDG----WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ---SSS----SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ---CCc----ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 010 11112234444 88888999888889999999999999999999887755 4567888999999999763
Q ss_pred C-CCCeEEEEEec
Q 004149 455 V-DVPQVKYGYFV 466 (771)
Q Consensus 455 ~-~p~~l~~~~~~ 466 (771)
+ .-..||++++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 33457777766
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=149.72 Aligned_cols=218 Identities=16% Similarity=0.219 Sum_probs=125.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||++++. ...+......+.+.||.|+++|+||. |.+..... ......++++.+.+..+.+. .+.
T Consensus 24 ~~~~vl~~hG~~g~~-~~~~~~~~~~l~~~g~~vi~~d~~G~---G~s~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS-HEYLENLRELLKEEGREVIMYDQLGC---GYSDQPDD--SDELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCCeEEEEcCCCCcc-HHHHHHHHHHHHhcCCEEEEEcCCCC---CCCCCCCc--ccccccHHHHHHHHHHHHHH--cCC
Confidence 357899999976553 22334444555556999999999994 43321100 00012355565556555554 244
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-----CCCCCc-ch-hhhhccCCC----------CCc
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----TTDIPD-WC-YVESYGSKG----------KDS 678 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----~~~~~~-~~-~~~~~~~~~----------~~~ 678 (771)
+++.++||||||.+++.++..+|++++++++.+++........ ....+. .. ......... ...
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEV 175 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 6799999999999999999999999999998887543211100 000000 00 000000000 000
Q ss_pred C------CCCCChhhHHH------------------------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004149 679 F------TESPSVEDLTR------------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 679 ~------~~~~~~~~~~~------------------------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~ 728 (771)
+ ........... +........+.++++|+|+++|+.|.. ++.....+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~ 254 (288)
T TIGR01250 176 FYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQE 254 (288)
T ss_pred HHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHH
Confidence 0 00000000000 000111234567899999999999984 5666666655
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.+. .+++++++++||..... ...++.+.+.+||+
T Consensus 255 ~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 255 LIA----GSRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred hcc----CCeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 553 36788999999987754 55678888888873
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=149.65 Aligned_cols=224 Identities=17% Similarity=0.181 Sum_probs=131.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
|.+|.++++.|+ .+++.|+||++-| ..+ ....+. ...++|+.+|++++.+|.+|.+. +....+. ...
T Consensus 174 g~~I~g~LhlP~---~~~p~P~VIv~gG-lDs-~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~---s~~~~l~----~D~ 241 (411)
T PF06500_consen 174 GKTIPGYLHLPS---GEKPYPTVIVCGG-LDS-LQEDLYRLFRDYLAPRGIAMLTVDMPGQGE---SPKWPLT----QDS 241 (411)
T ss_dssp TCEEEEEEEESS---SSS-EEEEEEE---TTS--GGGGHHHHHCCCHHCT-EEEEE--TTSGG---GTTT-S-----S-C
T ss_pred CcEEEEEEEcCC---CCCCCCEEEEeCC-cch-hHHHHHHHHHHHHHhCCCEEEEEccCCCcc---cccCCCC----cCH
Confidence 478999999998 5678898887755 322 233333 34457899999999999999543 3211111 111
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-hh-hcCCCCCcchhh----hh
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LM-VGTTDIPDWCYV----ES 670 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~-~~~~~~~~~~~~----~~ 670 (771)
-.-..++++||...+.+|..||+++|.|+||++|..+|..++++++++|+.+|++.-. .- ......|. ++. ..
T Consensus 242 ~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P~-my~d~LA~r 320 (411)
T PF06500_consen 242 SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVPD-MYLDVLASR 320 (411)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCCH-HHHHHHHHH
Confidence 2234578899999999999999999999999999999988888999999988865321 11 11111111 121 22
Q ss_pred ccCCCCCcCCCCCChh-hHHHHhhcCccc--cc--cCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 671 YGSKGKDSFTESPSVE-DLTRFHSKSPIS--HI--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~-~~~~~~~~sp~~--~~--~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
++.. ....+ ....+...|... .+ .+.++|+|.+.|++|+++|.++.+.++. .+.+-+...++..
T Consensus 321 lG~~-------~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~~gk~~~~~~~ 389 (411)
T PF06500_consen 321 LGMA-------AVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SSTDGKALRIPSK 389 (411)
T ss_dssp CT-S-------CE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBTT-EEEEE-SS
T ss_pred hCCc-------cCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCCCCceeecCCC
Confidence 2210 01111 122334444432 23 5677999999999999999888766543 2333455566554
Q ss_pred C-ccCCCCCChHHHHHHHHHHHHHHh
Q 004149 746 V-HGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~-H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
. |.-. ...+..+.+||++.|
T Consensus 390 ~~~~gy-----~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 390 PLHMGY-----PQALDEIYKWLEDKL 410 (411)
T ss_dssp SHHHHH-----HHHHHHHHHHHHHHH
T ss_pred ccccch-----HHHHHHHHHHHHHhc
Confidence 4 5432 467889999999875
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=144.79 Aligned_cols=212 Identities=15% Similarity=0.185 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 616 (771)
|+||++||.+.. ...|...+..|+ .||.|+++|+||.+.... +........+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPGHGSSQS------PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCCCCCCCC------CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999997655 446777888887 899999999999544311 111122345555544 5555544 3467
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc----CCCCCcc----------hhhhhccC-CCCCcCCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDW----------CYVESYGS-KGKDSFTE 681 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~----------~~~~~~~~-~~~~~~~~ 681 (771)
++.++|||+||.+++.++.++|+.++++++.++......... ......+ .+...+.. ........
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 899999999999999999999999999998887543211000 0000000 00000000 00000000
Q ss_pred CCC---------------hhhHHHHh------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004149 682 SPS---------------VEDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 682 ~~~---------------~~~~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
... ......+. ..+....+.++++|+|+++|++|..++ .. .+.+.+...+++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCCCCcEE
Confidence 000 00000000 112223456789999999999998763 22 23344444557899
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 741 VFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
.++++||.+.... ..++...+.+||
T Consensus 226 ~~~~~gH~~~~e~-~~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHLEN-PEAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCccC-hHHHHHHHHHHh
Confidence 9999999876443 457777788776
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=148.70 Aligned_cols=207 Identities=17% Similarity=0.217 Sum_probs=125.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|+ .+|.|+++|+||. |.+.. .....++++ ++.+.+.. .+
T Consensus 4 ~~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G~---G~s~~------~~~~~~~~~---~~~~~~~~---~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPGH---GRSRG------FGPLSLADA---AEAIAAQA---PD 65 (245)
T ss_pred CceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCcC---ccCCC------CCCcCHHHH---HHHHHHhC---CC
Confidence 3779999996654 446777777775 4799999999994 43321 111233443 44444432 36
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC-CCC-------------cch-hhhh------ccCCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DIP-------------DWC-YVES------YGSKG 675 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-~~~-------------~~~-~~~~------~~~~~ 675 (771)
++.++||||||.+++.++.++|++++++|+.++........... ... .+. .... +....
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 89999999999999999999999999999876643211000000 000 000 0000 00000
Q ss_pred CC--------cCC--CCCChhh----HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 676 KD--------SFT--ESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 676 ~~--------~~~--~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.. .+. ..+.... ...+...+....+.++++|+|+++|++|..+|++..+.+.+.+. ++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 221 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYI 221 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEE
Confidence 00 000 0000000 01111112223467899999999999999999888777766654 478899
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHH
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
++++||..... ...++.+.+.+|+
T Consensus 222 ~~~~gH~~~~e-~p~~~~~~i~~fi 245 (245)
T TIGR01738 222 FAKAAHAPFLS-HAEAFCALLVAFK 245 (245)
T ss_pred eCCCCCCcccc-CHHHHHHHHHhhC
Confidence 99999987654 4567888888774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=146.12 Aligned_cols=210 Identities=16% Similarity=0.209 Sum_probs=125.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|. .+|.|+++|+||.+.++. +.. .....+++.+.+..+++.. +.+
T Consensus 34 ~~~iv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~------~~~-~~~~~~~~~~~~~~~~~~~--~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTW--SFLYRDIIVALR-DRFRCVAPDYLGFGLSER------PSG-FGYQIDEHARVIGEFVDHL--GLD 101 (286)
T ss_pred CCEEEEECCCCcc--HHHHHHHHHHHh-CCcEEEEECCCCCCCCCC------CCc-cccCHHHHHHHHHHHHHHh--CCC
Confidence 4789999997643 345666677775 469999999999443321 111 1234677777777777653 457
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh---------hhhcCCCCCcch-----hhhhccCCCCCcCCCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC-----YVESYGSKGKDSFTES 682 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 682 (771)
++.++||||||.+++.++..+|++++++|+.++..-.. ............ +...+... .....
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 178 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPA---GTEHR 178 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccc---cccCC
Confidence 89999999999999999999999999999877643100 000000000000 00000000 00000
Q ss_pred CChhhHHHHh--------------------hcCc-ccc----cc--CCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCC
Q 004149 683 PSVEDLTRFH--------------------SKSP-ISH----IS--KVKTPTIFLLGAQDLRVPVSN-GLQYARALREKG 734 (771)
Q Consensus 683 ~~~~~~~~~~--------------------~~sp-~~~----~~--~i~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~g 734 (771)
........+. ...+ ... +. .+++|+|+++|++|..+++.. ++.+.+.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~-- 256 (286)
T PRK03204 179 PSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPD-- 256 (286)
T ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCC--
Confidence 0000000000 0000 000 11 127999999999999886653 4555555543
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
.++++++++||.... +...++.+.+.+||
T Consensus 257 --~~~~~i~~aGH~~~~-e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 257 --HVLVELPNAKHFIQE-DAPDRIAAAIIERF 285 (286)
T ss_pred --CeEEEcCCCcccccc-cCHHHHHHHHHHhc
Confidence 688899999998774 45557888888886
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=153.84 Aligned_cols=221 Identities=19% Similarity=0.232 Sum_probs=126.1
Q ss_pred CcEEEEEcCCCCCCCCCcch--HHHHHH-------HHCCcEEEEECCCCCCCCChhhhhcCC--CCccccchhhHHHHH-
Q 004149 537 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 604 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~--~~~~~l-------a~~G~~V~~~d~rG~~~~g~~~~~~~~--~~~~~~~~~D~~~~i- 604 (771)
.|.||++||++.+. ..|. .....| ...+|.|+++|+||. |.+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~Gh---G~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGSG--KSFLSPTFAGELFGPGQPLDASKYFIILPDGIGH---GKSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCch--hhhccchhHHHhcCCCCcccccCCEEEEeCCCCC---CCCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 57899999977652 2232 222222 256899999999994 443211000 001123455655443
Q ss_pred HHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEecCCccch--------hhh-h-cCCCCCcc--------
Q 004149 605 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALM-V-GTTDIPDW-------- 665 (771)
Q Consensus 605 ~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~--------~~~-~-~~~~~~~~-------- 665 (771)
..+.+. .+.+++. |+||||||++++.++.++|++++++|+.++.... ... . .......+
T Consensus 144 ~~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
T PRK06489 144 RLVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQ 221 (360)
T ss_pred HHHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 334343 2345664 8999999999999999999999999988764210 000 0 00000000
Q ss_pred --h------hhhhccCC--------CCC------c----CC--CCCChhhH----HHHhhcCccccccCCCCcEEEEeeC
Q 004149 666 --C------YVESYGSK--------GKD------S----FT--ESPSVEDL----TRFHSKSPISHISKVKTPTIFLLGA 713 (771)
Q Consensus 666 --~------~~~~~~~~--------~~~------~----~~--~~~~~~~~----~~~~~~sp~~~~~~i~~P~Lii~G~ 713 (771)
. ........ ... . .. ........ ......+....+.+|++|+|+++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~ 301 (360)
T PRK06489 222 PPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSA 301 (360)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecC
Confidence 0 00000000 000 0 00 00000000 0001122234567899999999999
Q ss_pred CCCccCcHHH--HHHHHHHHhCCCCEEEEEeCCC----CccCCCCCChHHHHHHHHHHHHHHh
Q 004149 714 QDLRVPVSNG--LQYARALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 714 ~D~~vp~~~~--~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+|..+|++.+ +.+.+.+.+ .++++++++ ||... +....+.+.+.+||++.-
T Consensus 302 ~D~~~p~~~~~~~~la~~ip~----a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 302 DDERNPPETGVMEAALKRVKH----GRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCcccChhhHHHHHHHHhCcC----CeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 9999998865 566665543 689999996 99875 466788899999998754
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-14 Score=126.25 Aligned_cols=193 Identities=18% Similarity=0.245 Sum_probs=132.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
+|.-..+++.. .|. .....|+.|.+|--|... ...-....+..|.++||+++.+||||.+.+..+| .
T Consensus 10 ~Gp~G~le~~~-~~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------D 79 (210)
T COG2945 10 NGPAGRLEGRY-EPA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------D 79 (210)
T ss_pred cCCcccceecc-CCC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------c
Confidence 44444566544 444 356789999999744322 2223344667889999999999999987776554 3
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
.|.-+.+|+.++++|+.++.. +..-..+.|+|+|+++++.++.+.|+ ....+...|.++...
T Consensus 80 ~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~d---------------- 141 (210)
T COG2945 80 NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYD---------------- 141 (210)
T ss_pred CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchh----------------
Confidence 444578999999999998752 23335789999999999999998765 344455555443100
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
...+....+|.++++|+.|.++++....+..+. .+.+++.+++++|.|..
T Consensus 142 -------------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~g 191 (210)
T COG2945 142 -------------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHG 191 (210)
T ss_pred -------------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceecc
Confidence 012233457999999999998877665554443 56789999999998863
Q ss_pred CCChHHHHHHHHHHHH
Q 004149 752 PQSDFESFLNIGLWFK 767 (771)
Q Consensus 752 ~~~~~~~~~~i~~wl~ 767 (771)
. ...+.+.+.+|+.
T Consensus 192 K--l~~l~~~i~~~l~ 205 (210)
T COG2945 192 K--LIELRDTIADFLE 205 (210)
T ss_pred c--HHHHHHHHHHHhh
Confidence 3 2356677888873
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=141.86 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=123.4
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
.++.+.++.|. ..++.|+||++||+... ...|...+..|+++||.|+++|++|..+. ....+++
T Consensus 37 ~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i~ 100 (313)
T PLN00021 37 PPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEIK 100 (313)
T ss_pred CCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhHH
Confidence 45778899997 45778999999997654 44677788899999999999999873211 0122356
Q ss_pred hHHHHHHHHHHc--------CCCCCCeEEEEEcChhHHHHHHHHHhCCC-----ceeEEEecCCccchhhhhcCCCCCcc
Q 004149 599 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 599 D~~~~i~~l~~~--------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
++.++++|+.+. ..+|.++++|+|||+||.+++.++..+++ .++++++..|+....... .+.
T Consensus 101 d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-~~~---- 175 (313)
T PLN00021 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-QTP---- 175 (313)
T ss_pred HHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-CCC----
Confidence 677777777652 22567899999999999999999988764 578888888875421100 000
Q ss_pred hhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCC-----cc----CcH-HHHHHHHHHHhCCC
Q 004149 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-----RV----PVS-NGLQYARALREKGV 735 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-----~v----p~~-~~~~~~~~l~~~g~ 735 (771)
+.. ....+ ..-.+..|+|++++..|. .+ |.. +..+|+++.+ .
T Consensus 176 -----------------p~i------l~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~---~ 227 (313)
T PLN00021 176 -----------------PPV------LTYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECK---A 227 (313)
T ss_pred -----------------Ccc------cccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcC---C
Confidence 000 00001 112367999999999763 22 232 3366776654 3
Q ss_pred CEEEEEeCCCCccC
Q 004149 736 ETKVIVFPNDVHGI 749 (771)
Q Consensus 736 ~~~~~~~~~~~H~~ 749 (771)
+..+.+.++++|.-
T Consensus 228 ~~~~~~~~~~gH~~ 241 (313)
T PLN00021 228 PAVHFVAKDYGHMD 241 (313)
T ss_pred CeeeeeecCCCcce
Confidence 67888999999963
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=150.96 Aligned_cols=245 Identities=16% Similarity=0.178 Sum_probs=140.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---------cchHHH---HHHHHCCcEEEEECCCCC-CC-CCh
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS-LG-FGE 582 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---------~~~~~~---~~la~~G~~V~~~d~rG~-~~-~g~ 582 (771)
+|.++++..+-+++ ....|+||++||.+.+.... .|...+ ..|...+|.|+++|+||. .+ .+.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 35667766665431 12347899999966542111 233333 245568899999999993 22 221
Q ss_pred hhhhcC----CCCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh--
Q 004149 583 EALQSL----PGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-- 655 (771)
Q Consensus 583 ~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-- 655 (771)
+..... ..+.....++|+.+.+..+++.. ..++ +.|+||||||.+++.++.++|++++++|+.++......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 168 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWC 168 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHH
Confidence 110000 00111345677777766666553 3467 99999999999999999999999999998887543110
Q ss_pred --h------hcCC--C-----C-----Ccchh--hhh-----ccC-C-CCCcCCCC------C--------ChhhH----
Q 004149 656 --M------VGTT--D-----I-----PDWCY--VES-----YGS-K-GKDSFTES------P--------SVEDL---- 688 (771)
Q Consensus 656 --~------~~~~--~-----~-----~~~~~--~~~-----~~~-~-~~~~~~~~------~--------~~~~~---- 688 (771)
. .... . . +.+.+ ... +.. . ....+... + ..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (351)
T TIGR01392 169 IAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQ 248 (351)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHH
Confidence 0 0000 0 0 00000 000 000 0 00000000 0 00000
Q ss_pred -----------------HHHhhcCc-------cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE-eC
Q 004149 689 -----------------TRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV-FP 743 (771)
Q Consensus 689 -----------------~~~~~~sp-------~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~-~~ 743 (771)
..+...+. ...+.+|++|+|+|+|+.|..+|+..++.+.+.+.+....++++. ++
T Consensus 249 ~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~ 328 (351)
T TIGR01392 249 GDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIES 328 (351)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCC
Confidence 01111111 234678899999999999999999999999999987544444444 46
Q ss_pred CCCccCCCCCChHHHHHHHHHHHH
Q 004149 744 NDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
++||..... ...++.+.+.+||+
T Consensus 329 ~~GH~~~le-~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 329 PYGHDAFLV-ETDQVEELIRGFLR 351 (351)
T ss_pred CCCcchhhc-CHHHHHHHHHHHhC
Confidence 899987643 44577778888863
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=152.80 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=126.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-----ccc-hhhHHHHHHH
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-----SQD-VNDVLTAIDH 606 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~---~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~-----~~~-~~D~~~~i~~ 606 (771)
+.|+||++||+++... .+...+ ..|...+|.|+++|+||.+.+.... .....+. ... .+|+.+....
T Consensus 40 ~~~~vll~~~~~~~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (339)
T PRK07581 40 KDNAILYPTWYSGTHQ--DNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPS--NTPAPFNAARFPHVTIYDNVRAQHRL 115 (339)
T ss_pred CCCEEEEeCCCCCCcc--cchhhccCCCccCcCceEEEEecCCCCCCCCCCC--CCCCCCCCCCCCceeHHHHHHHHHHH
Confidence 4477777777554321 232222 2565678999999999954332111 0000111 111 2444443444
Q ss_pred HHHcCCCCCCeE-EEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh------------hhcCCCCCc---------
Q 004149 607 VIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------------MVGTTDIPD--------- 664 (771)
Q Consensus 607 l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------------~~~~~~~~~--------- 664 (771)
+.+. ...+++ .|+||||||++++.++.++|++++++|+.++...... +........
T Consensus 116 l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 193 (339)
T PRK07581 116 LTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPER 193 (339)
T ss_pred HHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHH
Confidence 5443 234674 7899999999999999999999999998865432100 000000000
Q ss_pred --------ch---hhhhc-cCCCCCc----------------CCCCCChhhHHH----Hhh----------cCccccccC
Q 004149 665 --------WC---YVESY-GSKGKDS----------------FTESPSVEDLTR----FHS----------KSPISHISK 702 (771)
Q Consensus 665 --------~~---~~~~~-~~~~~~~----------------~~~~~~~~~~~~----~~~----------~sp~~~~~~ 702 (771)
+. +...+ ....... ............ +.. .+....+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~ 273 (339)
T PRK07581 194 GLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGS 273 (339)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhc
Confidence 00 00000 0000000 000000000000 000 011234667
Q ss_pred CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 703 i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++|+|+++|++|..+|+..++.+.+.+.+ .+++++++ +||.....+. .++...|.+|+++++
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~----a~l~~i~~~~GH~~~~~~~-~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIPN----AELRPIESIWGHLAGFGQN-PADIAFIDAALKELL 337 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEeCCCCCccccccCc-HHHHHHHHHHHHHHH
Confidence 899999999999999999988887776643 68889998 8997765444 478889999999876
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=145.21 Aligned_cols=206 Identities=20% Similarity=0.205 Sum_probs=125.0
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|.+ .|.|+++|+|| +|.+.. . .....+++. +.+.+. ..++
T Consensus 14 ~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~---~---~~~~~~~~~---~~l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPG---FGRSRG---F---GALSLADMA---EAVLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCC---CCCCCC---C---CCCCHHHHH---HHHHhc---CCCC
Confidence 569999997655 4577778888865 59999999999 444321 1 112233333 344433 2478
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCC-cc-------------hhhhh------ccCCCC-
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DW-------------CYVES------YGSKGK- 676 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~-~~-------------~~~~~------~~~~~~- 676 (771)
+.++||||||.+++.++.++|++++++|+.++.............. .+ ..... +.....
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 9999999999999999999999999999887642210000000000 00 00000 000000
Q ss_pred -------CcCCC--CCChhh----HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 677 -------DSFTE--SPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 677 -------~~~~~--~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
..... .+.... ...+...+....+.++++|+|+++|++|..+|.+.+..+.+.+. +.++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~i~ 231 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFA 231 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEEeC
Confidence 00000 000000 01112223334577889999999999999999887766666554 37899999
Q ss_pred CCCccCCCCCChHHHHHHHHHHH
Q 004149 744 NDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
++||.... +....+.+.+.+|-
T Consensus 232 ~~gH~~~~-e~p~~f~~~l~~~~ 253 (256)
T PRK10349 232 KAAHAPFI-SHPAEFCHLLVALK 253 (256)
T ss_pred CCCCCccc-cCHHHHHHHHHHHh
Confidence 99998774 45557777777764
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-15 Score=146.13 Aligned_cols=196 Identities=19% Similarity=0.280 Sum_probs=120.4
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEE
Q 004149 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 619 (771)
||++||.+.+ ...|...+..| ++||.|+++|+||.+. +.... .......++..+.+..+++.. ..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G~G~---s~~~~---~~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPGHGR---SDPPP---DYSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTTSTT---SSSHS---SGSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCCccc---ccccc---ccCCcchhhhhhhhhhccccc--cccccc
Confidence 7999997766 35788888888 5899999999999444 32111 112234555555555555542 337899
Q ss_pred EEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-------CCCCCcch--hhhhccCCCCCcCCCCCC------
Q 004149 620 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDWC--YVESYGSKGKDSFTESPS------ 684 (771)
Q Consensus 620 l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~------ 684 (771)
++|||+||.+++.++.++|++++++|+.+|......... ......+. ....+.............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875322110 00000000 000000000000000000
Q ss_pred --hhhHHH-----HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 685 --VEDLTR-----FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 685 --~~~~~~-----~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
...... ....+....+.++++|+++++|++|..++.+..+.+.+.+ .+++++++++++|.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKL----PNAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHS----TTEEEEEETTSSSTHH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHC----CCCEEEEECCCCCccH
Confidence 000000 1122333566788999999999999999866666665554 3589999999999865
|
... |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.8e-14 Score=144.54 Aligned_cols=229 Identities=19% Similarity=0.230 Sum_probs=133.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..++...+.+ .+.+.||++||++.... .......+...+|.|+++|+|| +|.+.... ......
T Consensus 13 ~~~~l~y~~~g~------~~~~~lvllHG~~~~~~---~~~~~~~~~~~~~~vi~~D~~G---~G~S~~~~---~~~~~~ 77 (306)
T TIGR01249 13 DNHQLYYEQSGN------PDGKPVVFLHGGPGSGT---DPGCRRFFDPETYRIVLFDQRG---CGKSTPHA---CLEENT 77 (306)
T ss_pred CCcEEEEEECcC------CCCCEEEEECCCCCCCC---CHHHHhccCccCCEEEEECCCC---CCCCCCCC---CcccCC
Confidence 466666544321 12356899999776532 2233344556789999999999 55443111 111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh----hh--cCC----------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MV--GTT---------- 660 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~----~~--~~~---------- 660 (771)
.+++.+.+..+.+.. +.+++.++||||||.+++.++.++|++++++|+.++...... .. +..
T Consensus 78 ~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (306)
T TIGR01249 78 TWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRF 155 (306)
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHH
Confidence 556666666666552 446899999999999999999999999999888876432100 00 000
Q ss_pred --CCC-cc---hhhhh----ccCC------------------CCCcCCCC--C---ChhhHHHHhh-----------cC-
Q 004149 661 --DIP-DW---CYVES----YGSK------------------GKDSFTES--P---SVEDLTRFHS-----------KS- 695 (771)
Q Consensus 661 --~~~-~~---~~~~~----~~~~------------------~~~~~~~~--~---~~~~~~~~~~-----------~s- 695 (771)
..+ .. .+... +... ........ . .......+.. .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (306)
T TIGR01249 156 MDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDV 235 (306)
T ss_pred hhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcC
Confidence 000 00 00000 0000 00000000 0 0000000000 00
Q ss_pred ---ccccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 696 ---PISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 696 ---p~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
-...+.++ ++|+|++||++|..+|++.++++++.+.. .++++++++||.... .+..+.+.+|+..+|
T Consensus 236 ~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~gH~~~~----~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 236 ENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFPE----AELKVTNNAGHSAFD----PNNLAALVHALETYL 306 (306)
T ss_pred chHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCCC----CEEEEECCCCCCCCC----hHHHHHHHHHHHHhC
Confidence 11234566 58999999999999999998888877653 688899999998753 345688888888765
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=150.54 Aligned_cols=257 Identities=17% Similarity=0.190 Sum_probs=151.1
Q ss_pred cccCcccccccCCCceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCCc----chHHHHHHHHCCcEEEEECCCCCCC
Q 004149 505 PVKGVSANLTKGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS----YSKSLAFLSSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 505 ~~~~~~~~~~~~~g~~l~~~~~~P~~~-~~~~~~p~vv~~HGg~~~~~~~~----~~~~~~~la~~G~~V~~~d~rG~~~ 579 (771)
|+++..+++ .||..+....+.+... ....+.|+|+++||...+..... ....+..|+++||.|+++|.||.+.
T Consensus 43 ~~e~h~v~T--~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~ 120 (395)
T PLN02872 43 SCTEHTIQT--KDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRW 120 (395)
T ss_pred CceEEEEEC--CCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccccc
Confidence 444433344 4566666556543321 12234688999999765432211 1234556889999999999999642
Q ss_pred -CChhhhhcCCC-----CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCc
Q 004149 580 -FGEEALQSLPG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPL 650 (771)
Q Consensus 580 -~g~~~~~~~~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~ 650 (771)
+|......... .+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++.+|+
T Consensus 121 s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~ 196 (395)
T PLN02872 121 SYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPI 196 (395)
T ss_pred ccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcch
Confidence 22211111111 111222469999999997652 36899999999999998555 4565 46677777776
Q ss_pred cchhh----------------h---hcCCCC-C-cc---------h---------hhhhccCC-----------------
Q 004149 651 CNLAL----------------M---VGTTDI-P-DW---------C---------YVESYGSK----------------- 674 (771)
Q Consensus 651 ~~~~~----------------~---~~~~~~-~-~~---------~---------~~~~~~~~----------------- 674 (771)
..+.. + .+.... + .. | +....+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pa 276 (395)
T PLN02872 197 SYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPH 276 (395)
T ss_pred hhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCC
Confidence 43200 0 010000 0 00 0 00000000
Q ss_pred -----------------CCCcCCCCCChhhHHHHhhcC-ccccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 675 -----------------GKDSFTESPSVEDLTRFHSKS-PISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 675 -----------------~~~~~~~~~~~~~~~~~~~~s-p~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
..+.|.-. ...+...|-... |...+.++ ++|+++++|++|..+++..+..+.+.+..
T Consensus 277 gtS~k~~~H~~Q~~~s~~f~~yDyg-~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~-- 353 (395)
T PLN02872 277 PSSVKNLRHLFQMIRKGTFAHYDYG-IFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS-- 353 (395)
T ss_pred cchHHHHHHHHHHHhcCCcccCCCC-chhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC--
Confidence 00001000 112222333333 34567788 57999999999999999988888887754
Q ss_pred CCEEEEEeCCCCcc--CCCCCChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
..++..+++.+|. +...+...++++.|++||+++++
T Consensus 354 -~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 354 -KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred -ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 2577889999997 44566677899999999998753
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-14 Score=147.93 Aligned_cols=210 Identities=18% Similarity=0.172 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc-chhhHHHHHHHHHHcCCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ-DVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ 616 (771)
|.||++||.+.+ ...|...+..|++ +|.|+++|+||.+.+... ...+... ..+++.+.++.+ ..+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~-----~~~~~~~~~a~~l~~~i~~~------~~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELAK-KYKVYALDLLGFGWSDKA-----LIEYDAMVWRDQVADFVKEV------VKE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCc-----ccccCHHHHHHHHHHHHHHh------ccC
Confidence 568999996654 4466677777754 699999999995544321 1111111 123444444433 246
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC--------CCCCcchhhh-------------------
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--------TDIPDWCYVE------------------- 669 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--------~~~~~~~~~~------------------- 669 (771)
++.++|||+||++++.++.++|++++++|+.++.......... ..........
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999988764321100000 0000000000
Q ss_pred -----------hccC-CCCCcC--------CCCCC-hhh-HH---HHh----hcCccccccCCCCcEEEEeeCCCCccCc
Q 004149 670 -----------SYGS-KGKDSF--------TESPS-VED-LT---RFH----SKSPISHISKVKTPTIFLLGAQDLRVPV 720 (771)
Q Consensus 670 -----------~~~~-~~~~~~--------~~~~~-~~~-~~---~~~----~~sp~~~~~~i~~P~Lii~G~~D~~vp~ 720 (771)
.+.. .....+ ...+. ... .. .+. .......+.++++|+|+++|++|.++|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 0000 000000 00000 000 00 000 1112234678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 721 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 721 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.+.++.+.+.+ .+++++ ++||.+.. +...++.+.|.+|++
T Consensus 313 ~~~~~l~~~~p~----a~l~~i-~~GH~~~~-e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYPD----TTLVNL-QAGHCPHD-EVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCCC----CEEEEe-CCCCCccc-cCHHHHHHHHHHHHh
Confidence 888877776643 577777 68998764 445588899999985
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-14 Score=152.18 Aligned_cols=213 Identities=15% Similarity=0.211 Sum_probs=128.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.+.. ...|......|.+ +|.|+++|+||.+.+... .......++.+.+..+.+. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cC
Confidence 345789999996654 4467677777755 599999999995443211 1123466666666666655 45
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-------hcCCCCCc-c--hhhhhccC-CCCC------
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------VGTTDIPD-W--CYVESYGS-KGKD------ 677 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------~~~~~~~~-~--~~~~~~~~-~~~~------ 677 (771)
..++.|+|||+||.+++.++.++|++++++++.+|....... ........ . .+...+.. ....
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVED 275 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHH
Confidence 678999999999999999999999999999988875321100 00000000 0 00000000 0000
Q ss_pred --cCCCCCC-hhhHHHH----h-----hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 678 --SFTESPS-VEDLTRF----H-----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 678 --~~~~~~~-~~~~~~~----~-----~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.+..... ......+ . ..+....+.++++|+|+++|++|..+|+.++..+. ..+++.+++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~ 348 (371)
T PRK14875 276 LLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGA 348 (371)
T ss_pred HHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCC
Confidence 0000000 0000000 0 01112246678999999999999999987765432 23788899999
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004149 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
||..... ....+.+.|.+||++
T Consensus 349 gH~~~~e-~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 349 GHMPQME-AAADVNRLLAEFLGK 370 (371)
T ss_pred CCChhhh-CHHHHHHHHHHHhcc
Confidence 9977644 445677778888865
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-14 Score=126.55 Aligned_cols=209 Identities=15% Similarity=0.152 Sum_probs=135.8
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+...+||++||.-...........+.+|++.||.++.+|++|.+++..++. ++ .+..+++|+...++++....
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~G-n~~~eadDL~sV~q~~s~~n--- 103 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YG-NYNTEADDLHSVIQYFSNSN--- 103 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cC-cccchHHHHHHHHHHhccCc---
Confidence 456789999996554433344457788999999999999999777665543 22 33456799999999986531
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC---CCCcchhhhhccCCC--CCcCCCCCChhhHH
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVESYGSKG--KDSFTESPSVEDLT 689 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 689 (771)
.---+|+|||-||-.++.++.++++ +.-++.+++-.+........ +...|....-+.... ...+......+...
T Consensus 104 r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlm 182 (269)
T KOG4667|consen 104 RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLM 182 (269)
T ss_pred eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHH
Confidence 1123699999999999999999887 67777777766654433211 111111111110000 01111111222222
Q ss_pred HHhhcCcccccc--CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh
Q 004149 690 RFHSKSPISHIS--KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755 (771)
Q Consensus 690 ~~~~~sp~~~~~--~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 755 (771)
.....+....-. ..+||+|-+||..|.+||.+.+.+|++.+.. .++.+++|++|++...+..
T Consensus 183 drLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 183 DRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHNYTGHQSQ 246 (269)
T ss_pred HHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcCccchhhh
Confidence 222222211112 2359999999999999999999999999876 6899999999999865543
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-14 Score=134.67 Aligned_cols=193 Identities=21% Similarity=0.155 Sum_probs=119.8
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhh-cCCCCccccch
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDV 597 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~~g~~~~~-~~~~~~~~~~~ 597 (771)
.+.+|.|+.. +.++.|+||++||..... ..+.. +.+.-.++||+|+.|+..........|.- ......+..+.
T Consensus 2 ~Y~lYvP~~~-~~~~~PLVv~LHG~~~~a--~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~ 78 (220)
T PF10503_consen 2 SYRLYVPPGA-PRGPVPLVVVLHGCGQSA--EDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDV 78 (220)
T ss_pred cEEEecCCCC-CCCCCCEEEEeCCCCCCH--HHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccch
Confidence 4678999864 334789999999976653 22221 22333468999999996432212222210 11122333456
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
..+...++++..+..+|++||++.|+|.||.++..++..+|++|+++.+.+++.--.. .+.... .... .
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a----~~~~~a--~~~m-----~ 147 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCA----ASGASA--LSAM-----R 147 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccc----cCcccH--HHHh-----h
Confidence 6778889999999889999999999999999999999999999999988877532110 000000 0000 0
Q ss_pred cCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
. ...+...........+. ... ..|++|+||+.|..|.+..+.++.+++...
T Consensus 148 ~-g~~~~p~~~~~a~~~~g--~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 148 S-GPRPAPAAAWGARSDAG--AYP--GYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred C-CCCCChHHHHHhhhhcc--CCC--CCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 0 00011111111111110 111 259999999999999999999998888763
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=129.80 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=129.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-CCCcc----ccchhhHHHHHHHH
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGKVG----SQDVNDVLTAIDHV 607 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~-~~~~~----~~~~~D~~~~i~~l 607 (771)
.....|+||++||-+.. ...+....... .-.+.++.+.-+-.-..+..|.... ...+. ....+.+.++++.+
T Consensus 14 ~~p~~~~iilLHG~Ggd--e~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 14 GDPAAPLLILLHGLGGD--ELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCCcEEEEEecCCCC--hhhhhhhhhhc-CCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 34567899999996543 33343322222 3346666655332211122111111 11111 11234455666666
Q ss_pred HHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhh
Q 004149 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 608 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
.++..++.+|+.++|+|.|+.+++.++.++|+.++++++.+|..-...
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~-------------------------------- 138 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP-------------------------------- 138 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------------------
Confidence 667778999999999999999999999999999999999888642110
Q ss_pred HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
......-.+|+|++||+.|++||...+.++.+.|++.|.++++..++ .||.+. .+.++.+..|+.
T Consensus 139 ---------~~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~ 203 (207)
T COG0400 139 ---------ELLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLA 203 (207)
T ss_pred ---------ccccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHH
Confidence 00011234799999999999999999999999999999999999998 899986 567788889998
Q ss_pred HHh
Q 004149 768 KYC 770 (771)
Q Consensus 768 ~~l 770 (771)
+.+
T Consensus 204 ~~~ 206 (207)
T COG0400 204 NTL 206 (207)
T ss_pred hcc
Confidence 764
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=135.07 Aligned_cols=177 Identities=19% Similarity=0.146 Sum_probs=125.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCCCcchHH-------HHHHHHCCcEEEEECCCCCCCCChhhhh
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKS-------LAFLSSVGYSLLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~-p~vv~~HGg~~~~~~~~~~~~-------~~~la~~G~~V~~~d~rG~~~~g~~~~~ 586 (771)
...|.++.+.+|.|+++.+++++ |+|+|+||++..... ..... +...-+-+|-|++|.|--. +..+
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~d-n~~~l~sg~gaiawa~pedqcfVlAPQy~~i--f~d~--- 241 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSD-NDKVLSSGIGAIAWAGPEDQCFVLAPQYNPI--FADS--- 241 (387)
T ss_pred cccCceeeEEEecccccCCCCccccEEEEEecCCCCCch-hhhhhhcCccceeeecccCceEEEccccccc--cccc---
Confidence 34578899999999999999998 999999997655322 11111 1112244567777775421 1111
Q ss_pred cCCCCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcc
Q 004149 587 SLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
.+............+. -+.+++.+|.+||+++|.|+||+.++.++.++|+.|+|++++++--+..
T Consensus 242 ---e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v----------- 307 (387)
T COG4099 242 ---EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV----------- 307 (387)
T ss_pred ---ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh-----------
Confidence 0111112334444444 6677888999999999999999999999999999999999888753210
Q ss_pred hhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
..++. -++|+.+.|+.+|+.+|.+.++-++..|+..+.++++..|.
T Consensus 308 --------------------------------~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 308 --------------------------------YLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred --------------------------------hhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 11111 24799999999999999999999999999988888776665
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-14 Score=147.52 Aligned_cols=236 Identities=12% Similarity=0.144 Sum_probs=140.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCC---CCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHS---VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~---~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+..+.|.|... ....+.||++||-... .....+...+..|+++||.|+++|+||. |.+.. .........
T Consensus 48 ~~l~~~~~~~~--~~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~---g~s~~---~~~~~d~~~ 119 (350)
T TIGR01836 48 VVLYRYTPVKD--NTHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYP---DRADR---YLTLDDYIN 119 (350)
T ss_pred EEEEEecCCCC--cCCCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCC---CHHHh---cCCHHHHHH
Confidence 44456666521 1223348888984221 1122345688899999999999999983 33211 111111123
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-----------------C
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----------------T 660 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-----------------~ 660 (771)
+++.++++++.++. +.+++.++||||||.+++.++..+|+.++++|+.++.++....... .
T Consensus 120 ~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (350)
T TIGR01836 120 GYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMG 197 (350)
T ss_pred HHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcC
Confidence 45778899988764 4568999999999999999999999999999999887764221000 0
Q ss_pred CCCcchhhhhc--------------------cC-CCCCc-------CCCCCC--hhhHH----HHhhcCc----------
Q 004149 661 DIPDWCYVESY--------------------GS-KGKDS-------FTESPS--VEDLT----RFHSKSP---------- 696 (771)
Q Consensus 661 ~~~~~~~~~~~--------------------~~-~~~~~-------~~~~~~--~~~~~----~~~~~sp---------- 696 (771)
.++.+.....+ .. ..... +...+. ..... .....+.
T Consensus 198 ~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~ 277 (350)
T TIGR01836 198 NIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGG 277 (350)
T ss_pred CCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECC
Confidence 01111000000 00 00000 000000 00000 0001111
Q ss_pred -cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC--CCCChHHHHHHHHHHHHHH
Q 004149 697 -ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE--RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 697 -~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~wl~~~ 769 (771)
...+.++++|+|+++|++|.++|++.+..+++.+.. .++++++++ +||... ......+++..+.+||.++
T Consensus 278 ~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 278 RKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred EEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHhC
Confidence 112557889999999999999999999988887753 357778887 567533 3334578999999999863
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=148.11 Aligned_cols=246 Identities=15% Similarity=0.158 Sum_probs=142.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----------cchHHH---HHHHHCCcEEEEECCCCC-CCC-C
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-G 581 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----------~~~~~~---~~la~~G~~V~~~d~rG~-~~~-g 581 (771)
|..+++..+-.. .....|+||++||.+.+.... .|..++ ..|...+|.|+++|++|. ++. +
T Consensus 32 ~~~~~y~~~G~~---~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~ 108 (379)
T PRK00175 32 PVELAYETYGTL---NADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTG 108 (379)
T ss_pred CceEEEEecccc---CCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCC
Confidence 445555554321 122358999999977654210 133333 133356899999999983 221 2
Q ss_pred hhhhhc---CC--CCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh
Q 004149 582 EEALQS---LP--GKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~~~---~~--~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 655 (771)
.+.... .+ .......++++.+.+..+++.. +.++ +.|+||||||.+++.++.++|++++++|+.++......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 186 (379)
T PRK00175 109 PSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSA 186 (379)
T ss_pred CCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCH
Confidence 111000 00 0111345677776666666653 3456 48999999999999999999999999999886542110
Q ss_pred h---------hcCCCCCcc-------------------------------hhhhhccCCCCCcC--CCC---CChhhH--
Q 004149 656 M---------VGTTDIPDW-------------------------------CYVESYGSKGKDSF--TES---PSVEDL-- 688 (771)
Q Consensus 656 ~---------~~~~~~~~~-------------------------------~~~~~~~~~~~~~~--~~~---~~~~~~-- 688 (771)
. ......+.| .+...+........ ... ...+..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 266 (379)
T PRK00175 187 QNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLR 266 (379)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHH
Confidence 0 000000000 00000100000000 000 000000
Q ss_pred -------------------HHHhhcC--------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 689 -------------------TRFHSKS--------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 689 -------------------~~~~~~s--------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+...+ -...+.+|++|+|+|+|+.|..+|++.++++.+.+...+..+++++
T Consensus 267 ~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~ 346 (379)
T PRK00175 267 YQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAE 346 (379)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEE
Confidence 0000011 1234578899999999999999999999999999988777778887
Q ss_pred eC-CCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 742 FP-NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 742 ~~-~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++ ++||..... ...++.+.+.+||++.
T Consensus 347 i~~~~GH~~~le-~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 347 IDSPYGHDAFLL-DDPRYGRLVRAFLERA 374 (379)
T ss_pred eCCCCCchhHhc-CHHHHHHHHHHHHHhh
Confidence 75 899987644 4457889999999764
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=140.27 Aligned_cols=314 Identities=17% Similarity=0.174 Sum_probs=156.4
Q ss_pred CCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceee
Q 004149 82 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 160 (771)
Q Consensus 82 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~w 160 (771)
.+.+.+|||..+-.+...+-..+.|.+||++|+|.++.+ +..++|.++ ..++.+++|+.+.... .+..+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~~---------~g~~~ 88 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDNT---------FGGFL 88 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B-T---------TT-EE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCCc---------cceEE
Confidence 344667887665333333455689999999999998876 888999999 8888899998753321 26779
Q ss_pred cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc---------------CC------c---CcccCCcc
Q 004149 161 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE---------------ED------W---GETYAGKR 216 (771)
Q Consensus 161 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~d------~---g~~~~~~~ 216 (771)
||+.+.|+|+........ .+....+..........|++...|. .| | .+.+....
T Consensus 89 s~~~~~~~Yv~~~~~l~~--vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 89 SPDDRALYYVKNGRSLRR--VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp -TTSSEEEEEETTTEEEE--EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred ecCCCeEEEEECCCeEEE--EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 999999999764321110 1111111111111122233212221 11 1 12223334
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|+.+|+.+|+.+.+ .....-.+.+.+||..... |.|.- +..- ..-..+||.++.
T Consensus 167 ~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~l---i~fCH-EGpw--------~~Vd~RiW~i~~--------- 223 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPTL---IMFCH-EGPW--------DLVDQRIWTINT--------- 223 (386)
T ss_dssp -EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEEE---EEEEE--S-T--------TTSS-SEEEEET---------
T ss_pred CceEEEEECCCCceeEE--EecCccccCcccCCCCCCE---EEEec-cCCc--------ceeceEEEEEEc---------
Confidence 57899999999999998 6666677899999965541 55542 2211 012348999997
Q ss_pred hhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 297 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
+++..+.+... ...+...-|+|||++|+|.+... | ....-|..+|+.+++.+.+.....
T Consensus 224 --------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~----~--~~~~~i~~~d~~t~~~~~~~~~p~----- 284 (386)
T PF14583_consen 224 --------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP----G--GQDFWIAGYDPDTGERRRLMEMPW----- 284 (386)
T ss_dssp --------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEET----T--T--EEEEEE-TTT--EEEEEEE-S-----
T ss_pred --------CCCcceeeecCCCCcccccccccCCCCEEEEEeecC----C--CCceEEEeeCCCCCCceEEEeCCc-----
Confidence 66666665543 23477889999999999987744 2 224468888888876543211110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeee-------------CCeeEEEEEECCCCcEEEecCCCC--------
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-------------GSSQVIISVNVSSGELLRITPAES-------- 433 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-------------~~~~~l~~~d~~tg~~~~l~~~~~-------- 433 (771)
...+.-++||+.++=-... .+..-||.+++.+++...|.....
T Consensus 285 ----------------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 285 ----------------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp ----------------EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred ----------------eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 0122235677633221111 112257888998888776654321
Q ss_pred ---CceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 434 ---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 434 ---~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+-.+.|||||++|+|.+.- ..++.||++.+.
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred CccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 24457999999999998765 677889998865
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.6e-13 Score=131.05 Aligned_cols=220 Identities=11% Similarity=0.053 Sum_probs=132.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
++....+.++++.|. ..++.|+||++||.+.... ...|...+..|+++||.|+++|+||.+.+.... .. ..
T Consensus 6 ~~~~g~~~~~~~~p~---~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~---~~-~~ 78 (266)
T TIGR03101 6 DAPHGFRFCLYHPPV---AVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDF---AA-AR 78 (266)
T ss_pred cCCCCcEEEEEecCC---CCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcc---cc-CC
Confidence 334445778888776 3345789999999654321 224555678899999999999999954332111 11 11
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC----------C-C
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------T-D 661 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~----------~-~ 661 (771)
.....+|+..+++++.+.+ ..+|+|+||||||.+++.++.++|+.++++|+.+|+.+...+... . .
T Consensus 79 ~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~~~~~ 155 (266)
T TIGR03101 79 WDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVARRLGG 155 (266)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHHhccc
Confidence 1123688888999987763 468999999999999999999999999999999998764322110 0 0
Q ss_pred CCcc---hhhhhccCCCCCcCCCCC-ChhhHHHHhhcCccccccCCCCcEEEEeeCCCC-ccCcHHHHHHHHHHHhCCCC
Q 004149 662 IPDW---CYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-RVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 662 ~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-~vp~~~~~~~~~~l~~~g~~ 736 (771)
.... ...+.......-.+.+.. ..+....+...+....... ..++|++.-+.+. --......++.+++++.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 234 (266)
T TIGR03101 156 ESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGATLSPVFSRLGEQWVQSGVE 234 (266)
T ss_pred cccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCCCCHHHHHHHHHHHHcCCe
Confidence 0000 000010000000011111 1122222222222111111 4567777654322 22334567889999999999
Q ss_pred EEEEEeCCC
Q 004149 737 TKVIVFPND 745 (771)
Q Consensus 737 ~~~~~~~~~ 745 (771)
++...+++-
T Consensus 235 v~~~~~~~~ 243 (266)
T TIGR03101 235 VTVDLVPGP 243 (266)
T ss_pred EeeeecCCc
Confidence 999999886
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=133.84 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=134.2
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
...+.+|++||.+.+ ...|...+..|++ ...|.++|++| +|++.+..+..+. ......+.+.|+.....- +
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~-~~~e~~fvesiE~WR~~~--~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDP-TTAEKEFVESIEQWRKKM--G 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCc-ccchHHHHHHHHHHHHHc--C
Confidence 455668999995443 3456667778877 79999999999 6766654444332 222345555565444432 3
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh----hcCCCCCcch-----------------hhhhccC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----VGTTDIPDWC-----------------YVESYGS 673 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~----~~~~~~~~~~-----------------~~~~~~~ 673 (771)
.++..|+|||+||+++..+|.+||++++.+|+.+|.--.... ......+.|. ....+|.
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 568999999999999999999999999999999986422111 0001111121 0011111
Q ss_pred CCCC--------cCCCCCChhhHHHHh-----------------------hcCcc-ccccCCC--CcEEEEeeCCCCccC
Q 004149 674 KGKD--------SFTESPSVEDLTRFH-----------------------SKSPI-SHISKVK--TPTIFLLGAQDLRVP 719 (771)
Q Consensus 674 ~~~~--------~~~~~~~~~~~~~~~-----------------------~~sp~-~~~~~i~--~P~Lii~G~~D~~vp 719 (771)
.... .+......+....|. ...|+ ..+..++ +|+++|+|++|-+ .
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWM-D 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccc-c
Confidence 1111 111111111101111 11222 3344555 9999999999964 4
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
...+.++...+. ...++++++|++||..... +...+.+.++.+++.
T Consensus 318 ~~~g~~~~~~~~--~~~~~~~~v~~aGHhvylD-np~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSLM--KEYVEIIIVPGAGHHVYLD-NPEFFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHhh--cccceEEEecCCCceeecC-CHHHHHHHHHHHHhc
Confidence 556666666653 3458999999999987644 445777888887765
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=141.33 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=129.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+...... ......++++...+..+++.- ..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG---~G~S~~p~~~-~~~~ys~~~~a~~l~~~i~~l--~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLG---FGFSDKPQPG-YGFNYTLDEYVSSLESLIDEL--KS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCCccc-ccccCCHHHHHHHHHHHHHHh--CC
Confidence 35789999997755 4467777888864 89999999999 4444221100 011234555555555555542 34
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-----hhc-C-CC-CCcchh---hh----hc---cCC---
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVG-T-TD-IPDWCY---VE----SY---GSK--- 674 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----~~~-~-~~-~~~~~~---~~----~~---~~~--- 674 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|...... ... . .. ...+.. .. .+ ...
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMK 276 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCC
Confidence 6799999999999999999999999999999998642100 000 0 00 000000 00 00 000
Q ss_pred --C----CCcCCCCCC-hhhHH-HHhhc--Cc------cc---cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004149 675 --G----KDSFTESPS-VEDLT-RFHSK--SP------IS---HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 675 --~----~~~~~~~~~-~~~~~-~~~~~--sp------~~---~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
. ...+..... ..... .+... .. .. ...++++|+|+++|+.|..++.+.++++.+..
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~----- 351 (383)
T PLN03084 277 EDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS----- 351 (383)
T ss_pred HHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----
Confidence 0 000000000 00000 00000 00 00 01357899999999999999988777766642
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.++.++++++|.+.. +...++...|.+|++
T Consensus 352 ~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 352 QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 3688999999997764 556688888888885
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=136.22 Aligned_cols=206 Identities=17% Similarity=0.182 Sum_probs=119.0
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..| .+|.|+++|+||. |.+.... ....++..+.+..+++.. +.+
T Consensus 2 ~p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G~---G~S~~~~------~~~~~~~~~~l~~~l~~~--~~~ 66 (242)
T PRK11126 2 LPWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPGH---GGSAAIS------VDGFADVSRLLSQTLQSY--NIL 66 (242)
T ss_pred CCEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCCC---CCCCCcc------ccCHHHHHHHHHHHHHHc--CCC
Confidence 3779999997765 34787888877 3799999999994 4432111 113444444444444432 357
Q ss_pred eEEEEEcChhHHHHHHHHHhCCC-ceeEEEecCCccchhhh----hcCCCCCcch----------hhhh-ccCCCCCcCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----VGTTDIPDWC----------YVES-YGSKGKDSFT 680 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~----~~~~~~~~~~----------~~~~-~~~~~~~~~~ 680 (771)
++.++||||||.+++.++.++|+ +++++++.++....... ........|. .... +.......+.
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLN 146 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccC
Confidence 89999999999999999999865 49998887754321100 0000000010 0000 0000000000
Q ss_pred CCC-----------ChhhHHHHhh-------cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 681 ESP-----------SVEDLTRFHS-------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 681 ~~~-----------~~~~~~~~~~-------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
... .......+.. .+....+.++++|+++++|++|..+. .+.+. ...++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~~~~i 216 (242)
T PRK11126 147 AEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALPLHVI 216 (242)
T ss_pred ccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCeEEEe
Confidence 000 0000001100 01123456889999999999998552 22222 14789999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 743 PNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++||.+.. +...++.+.|..||++
T Consensus 217 ~~~gH~~~~-e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 217 PNAGHNAHR-ENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCCchhh-hChHHHHHHHHHHHhh
Confidence 999997764 4556888889999864
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-13 Score=136.04 Aligned_cols=215 Identities=17% Similarity=0.214 Sum_probs=123.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.++. ...|......|.++||.|+++|+||. |.+... + .....+++....+..+++... .
T Consensus 16 ~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g~---G~s~~~--~--~~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKSA---GIDQSD--A--DSVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccCC---CCCCCC--c--ccCCCHHHHHHHHHHHHHhcC-C
Confidence 446899999997665 34688888899889999999999994 432110 1 111234444444443333311 2
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh---hhh-cCCCCCcchhh-hh----ccC-------CC---
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---LMV-GTTDIPDWCYV-ES----YGS-------KG--- 675 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---~~~-~~~~~~~~~~~-~~----~~~-------~~--- 675 (771)
.+++.|+||||||.++..++.++|++++++|+.++..... ... .....+.+... .. ++. ..
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 3689999999999999999999999999999987643210 000 00000000000 00 000 00
Q ss_pred ----CC-cCCCCCChhhHH---HHhhcCc---c------ccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCE
Q 004149 676 ----KD-SFTESPSVEDLT---RFHSKSP---I------SHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 737 (771)
Q Consensus 676 ----~~-~~~~~~~~~~~~---~~~~~sp---~------~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 737 (771)
.. .+...+. +... ......+ + ....++ ++|+++|.|++|..+|++..+.+.+.+.. .
T Consensus 166 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~ 240 (273)
T PLN02211 166 KEFRRKILYQMSPQ-EDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----S 240 (273)
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----c
Confidence 00 0111111 1001 1111011 1 112344 68999999999999999988888877643 3
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 738 KVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
+++.++ +||.... +...++...|.+..
T Consensus 241 ~~~~l~-~gH~p~l-s~P~~~~~~i~~~a 267 (273)
T PLN02211 241 QVYELE-SDHSPFF-STPFLLFGLLIKAA 267 (273)
T ss_pred EEEEEC-CCCCccc-cCHHHHHHHHHHHH
Confidence 677785 8997653 33335555555443
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-14 Score=141.09 Aligned_cols=137 Identities=19% Similarity=0.211 Sum_probs=83.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC----------------CCCcchHHHHHHHHCCcEEEEECCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV----------------SLSSYSKSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~----------------~~~~~~~~~~~la~~G~~V~~~d~r 575 (771)
.+...++..+.++++.|++. .++.|+||++||-+... ....-......|+++||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 34455678899999999853 67899999999833211 0001123567899999999999998
Q ss_pred CCCCCChhhhhc----------------CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC
Q 004149 576 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 576 G~~~~g~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
|-|+.+...... +-..+......|...+++||..++.+|++||+++|+||||+.++++++. .+
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-Dd 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DD 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-ch
Confidence 854433211000 0011112224466779999999999999999999999999999999998 46
Q ss_pred ceeEEEecCCcc
Q 004149 640 KFVAAAARNPLC 651 (771)
Q Consensus 640 ~~~a~v~~~p~~ 651 (771)
++++.|+.+-++
T Consensus 249 RIka~v~~~~l~ 260 (390)
T PF12715_consen 249 RIKATVANGYLC 260 (390)
T ss_dssp T--EEEEES-B-
T ss_pred hhHhHhhhhhhh
Confidence 788887665554
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=131.06 Aligned_cols=243 Identities=18% Similarity=0.160 Sum_probs=151.0
Q ss_pred CCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 516 GAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~---~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
.||..+..-++.+... ......|+||++||-.+..........+..+.+.||.|+++|.||+++..-.. +.-+
T Consensus 101 ~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr~f 176 (409)
T KOG1838|consen 101 SDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PRLF 176 (409)
T ss_pred CCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Ccee
Confidence 3455565556655432 12356799999999776654444455667778999999999999976542211 1122
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCccch-hhhhcCCCCCcchh-
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNL-ALMVGTTDIPDWCY- 667 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~~-~~~~~~~~~~~~~~- 667 (771)
.....+|+.++++++.++. ...++..+|.||||.+.+.++++.. .+.+|+++.+|+--. ....-......+.+
T Consensus 177 ~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~ 254 (409)
T KOG1838|consen 177 TAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYN 254 (409)
T ss_pred ecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHH
Confidence 2334789999999999985 2457999999999999999988643 355666666665321 00000000000000
Q ss_pred ---------------------------------hhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCC
Q 004149 668 ---------------------------------VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 668 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~ 714 (771)
...+.........+.+ ...+.|.+.|+..++++|++|+|+|+..+
T Consensus 255 ~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~--~~deYY~~aSs~~~v~~I~VP~L~ina~D 332 (409)
T KOG1838|consen 255 RALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFK--SVDEYYKKASSSNYVDKIKVPLLCINAAD 332 (409)
T ss_pred HHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCC--cHHHHHhhcchhhhcccccccEEEEecCC
Confidence 0000000111111222 23456778899999999999999999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC---ChHHHHHH-HHHHHHHH
Q 004149 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLN-IGLWFKKY 769 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~-i~~wl~~~ 769 (771)
|+++|.+ +.-.-+. ..+..+-+++-.-+||--.... ....++.+ +.+||.+.
T Consensus 333 DPv~p~~-~ip~~~~--~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 333 DPVVPEE-AIPIDDI--KSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred CCCCCcc-cCCHHHH--hcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 9999875 2333222 2345677888888899533221 44456666 78888754
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=130.95 Aligned_cols=174 Identities=20% Similarity=0.264 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc---CC--CCCcchhh-hh
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG---TT--DIPDWCYV-ES 670 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~---~~--~~~~~~~~-~~ 670 (771)
++-+..|++||.+++.+++++|+|+|.|.||-+|+.++..+| .++++|+.+|..-...... .. .++..... ..
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 456789999999999999999999999999999999999988 7999999888543221100 00 01110000 00
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCCCC--EEEEEeCCCCc
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKGVE--TKVIVFPNDVH 747 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H 747 (771)
........+...........-......-.+.++++|+|++.|++|.+.|.. .+..+.++|++++.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 000000000000000000000111122346788999999999999999864 455677788888765 78999999999
Q ss_pred cCCCC---------------------------CChHHHHHHHHHHHHHHhC
Q 004149 748 GIERP---------------------------QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~---------------------------~~~~~~~~~i~~wl~~~l~ 771 (771)
.+.-+ ....+.|.++++||+++|+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76421 1356789999999999985
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=120.91 Aligned_cols=199 Identities=22% Similarity=0.365 Sum_probs=136.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCC-C---CCCCChhhhhcC-CCCcccc
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-G---SLGFGEEALQSL-PGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~r-G---~~~~g~~~~~~~-~~~~~~~ 595 (771)
+.+++.... ..+ .+||.+.--.+.. .+.-...+..++..||.|++||+- | +.+-..+.+... .+.-...
T Consensus 28 ldaYv~gs~----~~~-~~li~i~DvfG~~-~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~ 101 (242)
T KOG3043|consen 28 LDAYVVGST----SSK-KVLIVIQDVFGFQ-FPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPK 101 (242)
T ss_pred eeEEEecCC----CCC-eEEEEEEeeeccc-cHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCccc
Confidence 566665432 122 4555554321111 223455678889999999999974 5 111111111111 1112233
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
...++.+.++||+.++ +..+|+++|++|||-.+..+....| .|.++++..|..-
T Consensus 102 ~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~----------------------- 155 (242)
T KOG3043|consen 102 IWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFV----------------------- 155 (242)
T ss_pred chhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcC-----------------------
Confidence 4789999999999775 6789999999999999988888766 6888887666320
Q ss_pred CCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCccCCC---
Q 004149 676 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGIER--- 751 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~--- 751 (771)
. ...+..+++|+|++.++.|..+|+....++.+.+++... ..++.+|++.+|++..
T Consensus 156 --------d------------~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~ 215 (242)
T KOG3043|consen 156 --------D------------SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRA 215 (242)
T ss_pred --------C------------hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhcc
Confidence 0 123456789999999999999999999999998887532 3578999999999873
Q ss_pred ----C---CChHHHHHHHHHHHHHHhC
Q 004149 752 ----P---QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ----~---~~~~~~~~~i~~wl~~~l~ 771 (771)
| ...++.++.++.||++|++
T Consensus 216 ~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 216 NISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 2 2245778999999999984
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=137.40 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=135.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-CcEEEEECCCCCCCCCh-hhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGE-EALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G~~V~~~d~rG~~~~g~-~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+..|.||++||...+ ...|...+..|.+. |+.|+++|..| +|. +... .-......+....+..+....
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G---~g~~s~~~----~~~~y~~~~~v~~i~~~~~~~- 125 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPG---HGYSSPLP----RGPLYTLRELVELIRRFVKEV- 125 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCC---CCcCCCCC----CCCceehhHHHHHHHHHHHhh-
Confidence 467889999996654 55787777777554 69999999999 332 1111 111145666666666555443
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEE---ecCCccchhhhh--------c----CCC--------CCcchhhh
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA---ARNPLCNLALMV--------G----TTD--------IPDWCYVE 669 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v---~~~p~~~~~~~~--------~----~~~--------~~~~~~~~ 669 (771)
..+++.++|||+||++++.+|+.+|+.++.++ +.++........ . ... .+...+.+
T Consensus 126 -~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 204 (326)
T KOG1454|consen 126 -FVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSE 204 (326)
T ss_pred -cCcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeH
Confidence 23559999999999999999999999999999 554433211000 0 000 00000000
Q ss_pred hccCCCCCcCCC-CCChhhH--------------H---HH----h--hcCccccccCCC-CcEEEEeeCCCCccCcHHHH
Q 004149 670 SYGSKGKDSFTE-SPSVEDL--------------T---RF----H--SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 670 ~~~~~~~~~~~~-~~~~~~~--------------~---~~----~--~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~ 724 (771)
.........+.. ....+.. . .+ . .......+.++. +|+||++|+.|+++|.+.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~ 284 (326)
T KOG1454|consen 205 GLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAE 284 (326)
T ss_pred hhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHH
Confidence 000000000000 0000000 0 00 0 123334566776 99999999999999999777
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
.+.+.+ .++++++++++||.... +..+++...|..|+.++.
T Consensus 285 ~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 285 ELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 776665 35899999999997765 667789999999998764
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=138.07 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=113.5
Q ss_pred chHHHH---HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHH
Q 004149 555 YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLT 630 (771)
Q Consensus 555 ~~~~~~---~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a 630 (771)
|..++. .|...+|.|+++|+||. |.+. ... ...++..+.+..+++.- +.++ +.|+||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G~---g~s~----~~~---~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIGA---DGSL----DVP---IDTADQADAIALLLDAL--GIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCCC---CCCC----CCC---CCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHH
Confidence 444554 45445799999999984 4331 111 12334444444444432 3344 5799999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhh----hhc-------CC-C--CC-c------chhhhhccC-C-CCCcCCCCC----
Q 004149 631 THLIGQAPDKFVAAAARNPLCNLAL----MVG-------TT-D--IP-D------WCYVESYGS-K-GKDSFTESP---- 683 (771)
Q Consensus 631 ~~~a~~~p~~~~a~v~~~p~~~~~~----~~~-------~~-~--~~-~------~~~~~~~~~-~-~~~~~~~~~---- 683 (771)
+.++.++|++++++|+.++...... ... .. . .. . +.....+.. . ....+....
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 9999999999999999987542110 000 00 0 00 0 000000000 0 000000000
Q ss_pred -----Chhh-H-----HHHhhcCc-------------cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004149 684 -----SVED-L-----TRFHSKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 684 -----~~~~-~-----~~~~~~sp-------------~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
.... . ......++ ...+.++++|+|+++|++|..+|++.+.++.+.+.. ..++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeE
Confidence 0000 0 00000000 113567899999999999999999888887776632 3688
Q ss_pred EEeCC-CCccCCCCCChHHHHHHHHHHHHH
Q 004149 740 IVFPN-DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++++ +||..... ...++...+.+||++
T Consensus 310 ~~i~~~aGH~~~lE-~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 310 RVLRSPYGHDAFLK-ETDRIDAILTTALRS 338 (343)
T ss_pred EEEeCCccHHHHhc-CHHHHHHHHHHHHHh
Confidence 99985 99987754 455888899999975
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-10 Score=120.45 Aligned_cols=247 Identities=15% Similarity=0.093 Sum_probs=141.8
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+|+|||+.++...... ..++.++ ..++..+.+...... ..+.|+|||+.|+....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~~~------- 92 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS---DTIQVIDLATGEVIGTLPSGPDP----------ELFALHPNGKILYIANE------- 92 (300)
T ss_pred CCceEECCCCCEEEEEECCC---CeEEEEECCCCcEEEeccCCCCc----------cEEEECCCCCEEEEEcC-------
Confidence 45689999999875543321 2344444 334333322222222 47889999997765422
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....|++||+.+++.... .+....+..+.|+|||+. ++
T Consensus 93 ------------------------------------~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~ 130 (300)
T TIGR03866 93 ------------------------------------DDNLVTVIDIETRKVLAE--IPVGVEPEGMAVSPDGKI----VV 130 (300)
T ss_pred ------------------------------------CCCeEEEEECCCCeEEeE--eeCCCCcceEEECCCCCE----EE
Confidence 125799999988765433 233334567899999997 77
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCC
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
+.+.. ...++.+|. .+++...............|+|||++|++.....
T Consensus 131 ~~~~~--------------~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~- 178 (300)
T TIGR03866 131 NTSET--------------TNMAHFIDT-----------------KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG- 178 (300)
T ss_pred EEecC--------------CCeEEEEeC-----------------CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC-
Confidence 65421 113555676 4444322111222345689999999887664332
Q ss_pred CCCCCccccccceeeecCCCCCCC-CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 340 VDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|+++|+.+++... +.... ....++ ......+.|+|||+.+++..... ..+..+
T Consensus 179 ---------~~v~i~d~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~ 234 (300)
T TIGR03866 179 ---------GTVSVIDVATRKVIKKITFEI-----------PGVHPE--AVQPVGIKLTKDGKTAFVALGPA--NRVAVV 234 (300)
T ss_pred ---------CEEEEEEcCcceeeeeeeecc-----------cccccc--cCCccceEECCCCCEEEEEcCCC--CeEEEE
Confidence 358899988765311 11000 000000 00123567999999876654333 357777
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|+.++++..............|+++|+.|+..... -..|.+.++.++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~i~v~d~~~~ 281 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV---SNDVSVIDVAAL 281 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC---CCeEEEEECCCC
Confidence 98888876543322334456889999987755321 224777776554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.6e-12 Score=132.97 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=141.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC----------CCcchH-HH---HHHHHCCcEEEEECCCCCCC-----C
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS----------LSSYSK-SL---AFLSSVGYSLLIVNYRGSLG-----F 580 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~----------~~~~~~-~~---~~la~~G~~V~~~d~rG~~~-----~ 580 (771)
+|.+..|-.. ...+.++||++|+..++.- ...|.. .+ ..+--..|.||++|..|++. +
T Consensus 42 ~~~Y~t~G~l---n~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~ 118 (389)
T PRK06765 42 QMGYETYGTL---NRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNV 118 (389)
T ss_pred eEEEEecccc---CCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCC
Confidence 4444444433 3345699999998443210 012221 11 12333459999999998642 1
Q ss_pred Ch---hhhhcCCC-----CccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 581 GE---EALQSLPG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 581 g~---~~~~~~~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
|. ...+...+ ......++|+.+++..+++.. +-+++. ++||||||++++.++.++|++++.+|+++...
T Consensus 119 g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~ 196 (389)
T PRK06765 119 ITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNP 196 (389)
T ss_pred CCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCC
Confidence 11 11111111 233356888888887777763 346775 99999999999999999999999999886532
Q ss_pred chhhh------h----cCCCCCcch---h---------------------------hhhccCCCCCcCC---CCCChhhH
Q 004149 652 NLALM------V----GTTDIPDWC---Y---------------------------VESYGSKGKDSFT---ESPSVEDL 688 (771)
Q Consensus 652 ~~~~~------~----~~~~~~~~~---~---------------------------~~~~~~~~~~~~~---~~~~~~~~ 688 (771)
..... . .....+.|. | ...+......... ........
T Consensus 197 ~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~ 276 (389)
T PRK06765 197 QNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSF 276 (389)
T ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhH
Confidence 11000 0 000011110 0 0001100000000 00000000
Q ss_pred HHHh------------------------hc-------CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCE
Q 004149 689 TRFH------------------------SK-------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 737 (771)
Q Consensus 689 ~~~~------------------------~~-------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 737 (771)
+.|. .. +....+.++++|+|+|+|+.|..+|++.++++.+.+...+.++
T Consensus 277 e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a 356 (389)
T PRK06765 277 EKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYA 356 (389)
T ss_pred HHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCe
Confidence 1110 00 2233466889999999999999999999999999998766678
Q ss_pred EEEEeCC-CCccCCCCCChHHHHHHHHHHHHH
Q 004149 738 KVIVFPN-DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 738 ~~~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++++++ .||.... +...++...|.+||++
T Consensus 357 ~l~~I~s~~GH~~~l-e~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 357 EVYEIESINGHMAGV-FDIHLFEKKIYEFLNR 387 (389)
T ss_pred EEEEECCCCCcchhh-cCHHHHHHHHHHHHcc
Confidence 9999985 8998664 3445788888999875
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=123.46 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=83.4
Q ss_pred cCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 212 YAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
+.+....++|+|+....+ +.+. +....-+.++.||||++. |+-.+. +. .|-+++-.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rm--tgHq~lVn~V~fSPd~r~----IASaSF-------------Dk--SVkLW~g~- 397 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRM--TGHQALVNHVSFSPDGRY----IASASF-------------DK--SVKLWDGR- 397 (480)
T ss_pred EEecCCceEEEecccccccchhhh--hchhhheeeEEECCCccE----EEEeec-------------cc--ceeeeeCC-
Confidence 345567899999864332 3455 445556889999999998 887772 22 44445530
Q ss_pred ccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004149 290 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
.+.-...+..+-..+...+||.|.+-|+-.+.+ ..|.+|++.+.+..+-..+..
T Consensus 398 ---------------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD-----------sTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 398 ---------------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD-----------STLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred ---------------CcchhhhhhhccceeEEEEeccCccEEEEcCCC-----------ceEEEEEeeeeeecccCCCCC
Confidence 333455566677788999999999977766654 358889988876543222211
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004149 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~ 404 (771)
..+..+.|||||.++.
T Consensus 452 -------------------DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 452 -------------------DEVFAVDWSPDGQRVA 467 (480)
T ss_pred -------------------ceEEEEEecCCCceee
Confidence 1245678999999663
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.4e-12 Score=154.99 Aligned_cols=224 Identities=17% Similarity=0.233 Sum_probs=132.6
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC-C--CccccchhhHHHHHHHHHHcCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-G--KVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~-~--~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|+||++||.+.+ ...|...+..|.+ +|.|+++|+||. |.+...... . ......++++.+.+..++++
T Consensus 1370 ~~~~vVllHG~~~s--~~~w~~~~~~L~~-~~rVi~~Dl~G~---G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~-- 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGT--GEDWIPIMKAISG-SARCISIDLPGH---GGSKIQNHAKETQTEPTLSVELVADLLYKLIEH-- 1441 (1655)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEcCCCC---CCCCCccccccccccccCCHHHHHHHHHHHHHH--
Confidence 45789999997765 3467777777754 699999999994 443211100 0 01122355555555555444
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh--h--hcCCCCCcc----------hhhhhccCCC-CC
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--M--VGTTDIPDW----------CYVESYGSKG-KD 677 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--~--~~~~~~~~~----------~~~~~~~~~~-~~ 677 (771)
.+.+++.|+||||||.+++.++.++|++++++|+.++...... . ........+ .+...+.... ..
T Consensus 1442 l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 1521 (1655)
T PLN02980 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWK 1521 (1655)
T ss_pred hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhh
Confidence 2457899999999999999999999999999998875422110 0 000000000 0000000000 00
Q ss_pred cCCCCC-------------ChhhHH-HHhh------cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC---
Q 004149 678 SFTESP-------------SVEDLT-RFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--- 734 (771)
Q Consensus 678 ~~~~~~-------------~~~~~~-~~~~------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g--- 734 (771)
.....+ ...... .+.. .+....+.++++|+|+++|++|..++ ..+.++.+.+.+..
T Consensus 1522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~ 1600 (1655)
T PLN02980 1522 SLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESG 1600 (1655)
T ss_pred hhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccccc
Confidence 000000 000000 0000 11123477889999999999999875 66677777665421
Q ss_pred -----CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 735 -----VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 735 -----~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
..+++++++++||.... ++...+.+.+.+||++.
T Consensus 1601 ~~~~~~~a~lvvI~~aGH~~~l-E~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1601 NDKGKEIIEIVEIPNCGHAVHL-ENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred ccccccceEEEEECCCCCchHH-HCHHHHHHHHHHHHHhc
Confidence 12689999999998764 44557889999999863
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=115.66 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=92.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC---
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--- 590 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~--- 590 (771)
...|...++++|.|++.+ .+.|+||++||+.++.... ....+-....+.||.|+.||- +...|......
T Consensus 41 ~~~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~~~ 113 (312)
T COG3509 41 DVNGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGNWF 113 (312)
T ss_pred ccCCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccccC
Confidence 446778899999998753 3349999999976653211 111122333568999999952 22223111111
Q ss_pred -----CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 591 -----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 591 -----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
..+..++..+.+.+..|+.+..+|+.||++.|.|.||.|+..++..+|++|.++..+++..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 2233457778888999999988999999999999999999999999999999988777654
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-12 Score=115.92 Aligned_cols=208 Identities=16% Similarity=0.186 Sum_probs=129.3
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCccc--cchhhHHHHHHHHHHcCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS--QDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d 614 (771)
-.|+++.|.-++. ...|......+ ...-+.|++.|.|| ||.+-. +..... ...+|...+++-+... +
T Consensus 43 ~~iLlipGalGs~-~tDf~pql~~l~k~l~~TivawDPpG---YG~SrP---P~Rkf~~~ff~~Da~~avdLM~aL---k 112 (277)
T KOG2984|consen 43 NYILLIPGALGSY-KTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRP---PERKFEVQFFMKDAEYAVDLMEAL---K 112 (277)
T ss_pred ceeEecccccccc-cccCCHHHHhcCCCCceEEEEECCCC---CCCCCC---CcccchHHHHHHhHHHHHHHHHHh---C
Confidence 3577778854442 45666655443 33449999999999 766532 111111 1246777777766553 5
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch-----hhhhcCCCCCcchh------hhhccCCCCCcCCCCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----ALMVGTTDIPDWCY------VESYGSKGKDSFTESP 683 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 683 (771)
.+++.|+|+|-||..|+.+|+++++.+...|+.....-. ..+-+..+...|.. ...|+.+ .
T Consensus 113 ~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e--------~ 184 (277)
T KOG2984|consen 113 LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPE--------T 184 (277)
T ss_pred CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHH--------H
Confidence 689999999999999999999999988777766553321 12222333333321 1111110 0
Q ss_pred ChhhHHHHh--------hc--C-ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 684 SVEDLTRFH--------SK--S-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 684 ~~~~~~~~~--------~~--s-p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....++.+- .. + --..+.+++||+||+||+.|++++-.+.--+...+.- .++.++|+++|++...
T Consensus 185 f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~----a~~~~~peGkHn~hLr 260 (277)
T KOG2984|consen 185 FRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSL----AKVEIHPEGKHNFHLR 260 (277)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhccc----ceEEEccCCCcceeee
Confidence 001111111 00 0 1134788999999999999999987765544443332 6899999999998754
Q ss_pred CChHHHHHHHHHHHHH
Q 004149 753 QSDFESFLNIGLWFKK 768 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~ 768 (771)
- ..++...+.+||+.
T Consensus 261 y-a~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 261 Y-AKEFNKLVLDFLKS 275 (277)
T ss_pred c-hHHHHHHHHHHHhc
Confidence 4 34788899999975
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=139.64 Aligned_cols=232 Identities=10% Similarity=0.108 Sum_probs=121.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.++++..+-+ ...|+||++||.+.. ...|...+..| ..||.|+++|+||. |.+.... .....
T Consensus 10 ~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G~---G~S~~~~---~~~~~ 74 (582)
T PRK05855 10 SDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRGA---GRSSAPK---RTAAY 74 (582)
T ss_pred eCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCCC---CCCCCCC---ccccc
Confidence 4677787665532 235889999997654 44677777777 67899999999994 4432111 11112
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecC-CccchhhhhcCCCC----------
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN-PLCNLALMVGTTDI---------- 662 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~-p~~~~~~~~~~~~~---------- 662 (771)
..+++.+.+..+++.-.. ..++.|+||||||.+++.++.+. +..+..++..+ |..+..........
T Consensus 75 ~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK05855 75 TLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRRLAR 153 (582)
T ss_pred CHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhhhhH
Confidence 233444333333333111 23499999999999998777652 23333333322 21111000000000
Q ss_pred ------Ccchh-------------hhhccC---CCCCcCCCCCCh------------hhHHHHh----hcCccccccCCC
Q 004149 663 ------PDWCY-------------VESYGS---KGKDSFTESPSV------------EDLTRFH----SKSPISHISKVK 704 (771)
Q Consensus 663 ------~~~~~-------------~~~~~~---~~~~~~~~~~~~------------~~~~~~~----~~sp~~~~~~i~ 704 (771)
..+.. ...... ............ .....+. ..........++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (582)
T PRK05855 154 ALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYTD 233 (582)
T ss_pred HHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCcc
Confidence 00000 000000 000000000000 0000000 000111234578
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 705 ~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+|+|+++|++|.++|+.....+.+.+. ..++++++ +||.... +....+...+.+|+++.
T Consensus 234 ~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~-e~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 234 VPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPM-SHPQVLAAAVAEFVDAV 292 (582)
T ss_pred CceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchh-hChhHHHHHHHHHHHhc
Confidence 999999999999999888777665443 35666665 6898764 34457788898998753
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=118.40 Aligned_cols=309 Identities=16% Similarity=0.132 Sum_probs=149.5
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
+..++||+++.|..+. + ...+++++++ ..++.+|||..+- .......+||+.+.++|+.+. ..+
T Consensus 41 ~~ft~dG~kllF~s~~-d-----g~~nly~lDL--~t~~i~QLTdg~g----~~~~g~~~s~~~~~~~Yv~~~----~~l 104 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDF-D-----GNRNLYLLDL--ATGEITQLTDGPG----DNTFGGFLSPDDRALYYVKNG----RSL 104 (386)
T ss_dssp --B-TTS-EEEEEE-T-T-----SS-EEEEEET--TT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETT----TEE
T ss_pred CCcCCCCCEEEEEecc-C-----CCcceEEEEc--ccCEEEECccCCC----CCccceEEecCCCeEEEEECC----CeE
Confidence 3347899999997663 2 5678899776 4458899998751 123347889999999998753 368
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceee--cCCCCeEEEEecCCCCCC--CCcc---------------CCCC
Q 004149 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSK--PTFS---------------LGST 186 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~w--SpDg~~la~~~~~~~~~~--~~~~---------------~~~~ 186 (771)
+.++ .+.+.+.+..++.... +.-.| ..|+++++.+........ ..|. ....
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~~---------g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDWK---------GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTT--EEEEEE--TTEE---------EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCcCcEEEEEECCcccc---------cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 8888 5666666666665432 33455 567998887654332211 1110 0011
Q ss_pred CCCC--CCccCCCCCCcccccCCcCcccC-------CccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 187 KGGS--SDKDCNSWKGQGDWEEDWGETYA-------GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 187 ~~~~--~~~~~~~~~~~~~~~~d~g~~~~-------~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.++. .......|.+...|+|.-..++. ..-...||+++.+++..+.+.........+.-.|+|||+.
T Consensus 176 ~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~---- 251 (386)
T PF14583_consen 176 KTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST---- 251 (386)
T ss_dssp TT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-----
T ss_pred CCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE----
Confidence 1111 12234556665555553322211 1123589999999999888843333446778899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|.|.+...+. ....|+.+|+ .+++.+.+..-+ ......-|+||+.+|=-..+
T Consensus 252 i~y~~~~~~~----------~~~~i~~~d~-----------------~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 252 IWYDSYTPGG----------QDFWIAGYDP-----------------DTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEEETTT------------EEEEEE-T-----------------TT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEeecCCC----------CceEEEeeCC-----------------CCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 9998742221 1125777777 666666554333 24466778999965533322
Q ss_pred CCCCC----CCc-cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004149 338 SSVDS----GAH-SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 338 ~~~~~----g~~-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~ 412 (771)
..+.. |.. ....-||++++..+....+.... ....+.. |......+.+.|||||+.|+|.++..|.
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~-~sw~v~~--------~~~q~~hPhp~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD-TSWKVLD--------GDRQVTHPHPSFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp -----------------EEEEEETTTTEEEEEEE--------BT--------TBSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred CCccccccccceecCCcEEEEeccccCceeeeeecc-Ccceeec--------CCCccCCCCCccCCCCCEEEEECCCCCC
Confidence 11100 000 01124667777665543221110 0000010 0001124688999999999999999999
Q ss_pred eEEEEEECC
Q 004149 413 QVIISVNVS 421 (771)
Q Consensus 413 ~~l~~~d~~ 421 (771)
..||.+++.
T Consensus 375 ~~vY~v~i~ 383 (386)
T PF14583_consen 375 PAVYLVEIP 383 (386)
T ss_dssp -EEEEEE--
T ss_pred ccEEEEeCc
Confidence 999999874
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=123.48 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=122.0
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
|.+...++|.|+++. .+++|+|+++||..+... ......+..|.+.| .+|+++|......... ....
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~-~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~----el~~--- 261 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWAES-MPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQ----ELPC--- 261 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhhhc-CCHHHHHHHHHHcCCCCceEEEEECCCCcccccc----cCCc---
Confidence 566888999998775 568999999999765432 12334556666677 4578887532111100 0111
Q ss_pred ccchh-hH-HHHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 594 SQDVN-DV-LTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 594 ~~~~~-D~-~~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
...+. .+ .+.+.++.++.. .|+++.+|+|+||||+.|++++.++|++|.++++.+|.+-+...
T Consensus 262 ~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~------------- 328 (411)
T PRK10439 262 NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR------------- 328 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc-------------
Confidence 01111 11 133345555433 47889999999999999999999999999999999986421100
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
... ......+.+... ........++|-+|+.|..+ ....+++++.|+++|.++++.++++ ||..
T Consensus 329 -~~~---------~~~~l~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~ 392 (411)
T PRK10439 329 -GGQ---------QEGVLLEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHDA 392 (411)
T ss_pred -cCC---------chhHHHHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 000 000001111110 01112346888899998654 4677899999999999999999987 6964
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-10 Score=113.51 Aligned_cols=294 Identities=14% Similarity=0.104 Sum_probs=173.0
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-
Q 004149 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW- 130 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~- 130 (771)
+|.+++++++. +.++.+ ..++...|+-.. +++.-..++-|++.++...+.+ + .+-+.+
T Consensus 331 ~Gd~ia~VSRG----------kaFi~~--~~~~~~iqv~~~------~~VrY~r~~~~~e~~vigt~dg-D--~l~iyd~ 389 (668)
T COG4946 331 NGDYIALVSRG----------KAFIMR--PWDGYSIQVGKK------GGVRYRRIQVDPEGDVIGTNDG-D--KLGIYDK 389 (668)
T ss_pred CCcEEEEEecC----------cEEEEC--CCCCeeEEcCCC------CceEEEEEccCCcceEEeccCC-c--eEEEEec
Confidence 78888887643 233321 223334444322 4577778888888665433322 2 233344
Q ss_pred cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004149 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
.+++.+++..--..+ ..+..|||||+++...
T Consensus 390 ~~~e~kr~e~~lg~I----------~av~vs~dGK~~vvaN--------------------------------------- 420 (668)
T COG4946 390 DGGEVKRIEKDLGNI----------EAVKVSPDGKKVVVAN--------------------------------------- 420 (668)
T ss_pred CCceEEEeeCCccce----------EEEEEcCCCcEEEEEc---------------------------------------
Confidence 344444443222222 5889999999887742
Q ss_pred ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004149 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
.+.+||++|+++|+++.+. -....-+..+.|||++++ |+|.-- .|+ -..+|.++|+
T Consensus 421 -----dr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~----iAYafP------~gy-----~tq~Iklydm--- 476 (668)
T COG4946 421 -----DRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRW----IAYAFP------EGY-----YTQSIKLYDM--- 476 (668)
T ss_pred -----CceEEEEEEecCCCeeEec-ccccceeEEEEEcCCcee----EEEecC------cce-----eeeeEEEEec---
Confidence 3479999999999999984 334456889999999999 999742 222 1237888887
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc----------ccceeeecCCCC
Q 004149 291 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT----------DSLHRIDWPTNG 360 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~----------~~l~~~d~~~~~ 360 (771)
.+++.-.+|.......+|+|.|||++|+|++.+.- .+.... ..=|++-+..|-
T Consensus 477 --------------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsL---dPs~Drv~fnf~f~~vskPylv~L~~g~ 539 (668)
T COG4946 477 --------------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSL---DPSNDRVIFNFSFQRVSKPYLVVLGRGY 539 (668)
T ss_pred --------------CCCeEEEecCCcccccCcccCCCCcEEEEEecccc---CCCCCeeEEEEEEeeeccceEEEecCCC
Confidence 78899999999999999999999999999998752 111111 111233332221
Q ss_pred CCC---C----ccceeeEEeccccc-CCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----------eeEEEEEECC
Q 004149 361 NFS---S----LEKIVDVIPVVQCA-EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVS 421 (771)
Q Consensus 361 ~~~---~----~~~~~~~~~~~~~~-~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~-----------~~~l~~~d~~ 421 (771)
..+ . +.... -+++-... ....||-. .....++.-..+|+.++|+..-++ ...|..+|++
T Consensus 540 ~sP~~q~p~~~~~ea~-e~dle~ie~r~eP~pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydle 617 (668)
T COG4946 540 YSPFNQPPDEANSEAG-EVDLEGIEDRVEPFPVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLE 617 (668)
T ss_pred CChhhcCchhcCcccc-ceehhhhcccccccccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecc
Confidence 110 0 00000 00000000 01112200 001123445678888888775332 3357777888
Q ss_pred CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 422 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 422 tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+.+.+.+..+. +...+|+|++.+++... -.|++++.+
T Consensus 618 tkk~~e~k~nv---ss~rlS~D~s~ilvk~d-----~kl~~f~ve 654 (668)
T COG4946 618 TKKVEEYKDNV---SSFRLSSDGSKILVKLD-----GKLRLFDVE 654 (668)
T ss_pred hhhHHHHhccc---ceEEEcCCCCEEEEEeC-----CeEEEEecc
Confidence 87777766543 34568999999887332 347777754
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-09 Score=108.23 Aligned_cols=268 Identities=17% Similarity=0.214 Sum_probs=149.3
Q ss_pred HHHHhhcCccccceEE-EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC
Q 004149 30 LLQDFTNISSIDKAWT-FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 108 (771)
Q Consensus 30 ~~~~~~~~~~~~~~~~-~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 108 (771)
+-+-+..+|+...+.- .=...|-|..|.|.. .+.+++..++... ...++|... ..+.-..+||
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~n----------Gksv~ir~i~~~~-~~~iYtEH~-----~~vtVAkySP 69 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTN----------GKSVIIRNIDNPA-SVDIYTEHA-----HQVTVAKYSP 69 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeC----------CCEEEEEECCCcc-ceeeecccc-----ceeEEEEeCC
Confidence 3445666777665421 112356888999963 2355555553332 233444443 3466788999
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCCC--CCccC--
Q 004149 109 SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK--PTFSL-- 183 (771)
Q Consensus 109 dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~--~~~~~-- 183 (771)
.|-++|-- +...-..+|+..+...++... .-..|.| ..++|++|+++|+-+.+.+..-. ..|+.
T Consensus 70 sG~yiASG-----D~sG~vRIWdtt~~~hiLKnef~v~aG~I------~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 70 SGFYIASG-----DVSGKVRIWDTTQKEHILKNEFQVLAGPI------KDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred CceEEeec-----CCcCcEEEEeccCcceeeeeeeeeccccc------ccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 99988742 222356777433333333211 1223333 78999999999998876553210 11110
Q ss_pred ---------------CCCC------------------CCCC------CccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004149 184 ---------------GSTK------------------GGSS------DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 184 ---------------~~~~------------------~~~~------~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
...+ .+++ ...+..+...++|+||+..-.+...+..++++|
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD 218 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence 0000 1112 223445556778999943334445578999999
Q ss_pred ccCCceeec-c-CCCCCCccceEEEecCCCCCccEEEEEeecCc-------c---------------eeeeeeeeccCCc
Q 004149 225 INSGEVQAV-K-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE-------T---------------RKLGIKYCYNRPC 280 (771)
Q Consensus 225 ~~~~~~~~l-~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~-------~---------------~~~g~~~~~~~~~ 280 (771)
-.+|+..-. . ..+...++..++||||+++ ++.++-... . ..+|..+ ...
T Consensus 219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~----~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---qkd 291 (603)
T KOG0318|consen 219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQ----FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---QKD 291 (603)
T ss_pred CCCccEEEEecCCCCccccEEEEEECCCCce----EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE---eCC
Confidence 888875443 2 1234557889999999999 988763222 1 1122222 233
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+|..+.+++. ++.-... +......+..+...+.....||||++|+-.+.+.
T Consensus 292 ~lItVSl~G~------in~ln~~-d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 292 HLITVSLSGT------INYLNPS-DPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred eEEEEEcCcE------EEEeccc-CCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 4555544210 0000000 1123455566677889999999999998777664
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-11 Score=128.87 Aligned_cols=216 Identities=18% Similarity=0.234 Sum_probs=126.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc---chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
++.+.|.|.. .....+.||++||.....+... -...+.+|+++||.|+++|+||.+..... ........
T Consensus 174 ~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~------~~~ddY~~ 245 (532)
T TIGR01838 174 FQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQAD------KTFDDYIR 245 (532)
T ss_pred EEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCccccc------CChhhhHH
Confidence 5667777763 2224566889999543322211 23578899999999999999984432111 11222334
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHH----HHHHhC-CCceeEEEecCCccchhhhh---------------
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNLALMV--------------- 657 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~----~~a~~~-p~~~~a~v~~~p~~~~~~~~--------------- 657 (771)
+++.++++.+.+. .+.+++.++|||+||.+++ .+++.+ +++++++++.+..+|+...-
T Consensus 246 ~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~~~~e 323 (532)
T TIGR01838 246 DGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIVAGIE 323 (532)
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhHHHHH
Confidence 5688888888865 3568899999999999863 234454 77899988887766642110
Q ss_pred ----cCCCCCc----------------ch-hhhhc--cCCCCCc-----C---CCCCC---hhhHHHHhhcCcc------
Q 004149 658 ----GTTDIPD----------------WC-YVESY--GSKGKDS-----F---TESPS---VEDLTRFHSKSPI------ 697 (771)
Q Consensus 658 ----~~~~~~~----------------~~-~~~~~--~~~~~~~-----~---~~~~~---~~~~~~~~~~sp~------ 697 (771)
....++. |. +...+ +.....+ . ...|. .+....++..+.+
T Consensus 324 ~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~ 403 (532)
T TIGR01838 324 RQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLE 403 (532)
T ss_pred HHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcCCeeE
Confidence 0000000 00 00000 0000000 0 00000 0011111222222
Q ss_pred -----ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 698 -----SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 698 -----~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
..+.+|++|+|+++|++|.++|++.+..+.+.+.. .+..+++++||...
T Consensus 404 v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~----~~~~vL~~sGHi~~ 457 (532)
T TIGR01838 404 VCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGG----PKTFVLGESGHIAG 457 (532)
T ss_pred ECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCC----CEEEEECCCCCchH
Confidence 34678899999999999999999988887766542 45668899999643
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-11 Score=125.50 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=100.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--Cc-chHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS-YSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--~~-~~~~~---~~la~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
.||.+|...+|+|+ ..++.|+++..+-.|..... .. ..... ..++.+||+|+..|.||++++...+-
T Consensus 27 RDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~---- 99 (563)
T COG2936 27 RDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFD---- 99 (563)
T ss_pred cCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccc----
Confidence 47899999999998 56889999998844443321 11 11112 36899999999999999877655432
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~ 653 (771)
.....+.+|-.+.|+||.++++.+ .+|+++|.|++|+..+++|+..|.-.++++..++..|.
T Consensus 100 -~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 100 -PESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred -eeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 122247899999999999998765 78999999999999999999999899999988887764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-09 Score=113.04 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=117.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....|+|||+.++.....+ + .+..++ ..++........... .++.|+|||+.|++.+...
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~-~--~l~~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~~----- 136 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDD-N--LVTVIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSETT----- 136 (300)
T ss_pred ccEEEECCCCCEEEEEcCCC-C--eEEEEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecCC-----
Confidence 45678999999875543222 2 344333 222222222211122 4789999999988864321
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
..++.+|..+++.... .........+.|+|||+. |+
T Consensus 137 --------------------------------------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~ 172 (300)
T TIGR03866 137 --------------------------------------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LW 172 (300)
T ss_pred --------------------------------------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EE
Confidence 3456678777665433 222234567899999997 76
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccceeecCCCCEE
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFL 331 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-------~~~~~~p~~SpDG~~l 331 (771)
+.+. ....|+++|+ .+++. ..++.. ........|||||+.+
T Consensus 173 ~~~~--------------~~~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 173 VSSE--------------IGGTVSVIDV-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred EEcC--------------CCCEEEEEEc-----------------CcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 6541 2236888887 44432 333211 1123457899999986
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+..... ...|.++|+.+++.... ... . ..+..++|+|||+.|+.+....
T Consensus 222 ~~~~~~----------~~~i~v~d~~~~~~~~~----------~~~---~-------~~~~~~~~~~~g~~l~~~~~~~- 270 (300)
T TIGR03866 222 FVALGP----------ANRVAVVDAKTYEVLDY----------LLV---G-------QRVWQLAFTPDEKYLLTTNGVS- 270 (300)
T ss_pred EEEcCC----------CCeEEEEECCCCcEEEE----------EEe---C-------CCcceEEECCCCCEEEEEcCCC-
Confidence 554322 23588999876543211 000 0 1234678999999876554333
Q ss_pred eeEEEEEECCCCcE-EEec
Q 004149 412 SQVIISVNVSSGEL-LRIT 429 (771)
Q Consensus 412 ~~~l~~~d~~tg~~-~~l~ 429 (771)
..|..+|+.+++. .++.
T Consensus 271 -~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 271 -NDVSVIDVAALKVIKSIK 288 (300)
T ss_pred -CeEEEEECCCCcEEEEEE
Confidence 3577778888885 4443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=111.86 Aligned_cols=177 Identities=19% Similarity=0.183 Sum_probs=119.0
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH
Q 004149 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 602 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~ 602 (771)
..++.|. ..+.+|+|||+||..-. ...|....+.+++.||+|+.+|+....+ .....+++++.+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~~~--~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFLLI--NSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcCCC--HHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3577887 56789999999996522 3347788999999999999999654221 122235788888
Q ss_pred HHHHHHHcC--------CCCCCeEEEEEcChhHHHHHHHHHhC-----CCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 603 AIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 603 ~i~~l~~~~--------~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.++|+.+.. ..|-+|++|+|||.||-++..++..+ +.++++++++.|+-.+.......
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~~--------- 140 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQTE--------- 140 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCCC---------
Confidence 899987631 15888999999999999999988876 45899999999986322110000
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCC---------ccCc-HHHHHHHHHHHhCCCCEEE
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL---------RVPV-SNGLQYARALREKGVETKV 739 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~---------~vp~-~~~~~~~~~l~~~g~~~~~ 739 (771)
|. .....| ..-+...|+|++-.+-.. ..|. .+-.+||++++ .+.-.
T Consensus 141 -------------P~------v~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~---~p~~~ 196 (259)
T PF12740_consen 141 -------------PP------VLTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECK---PPSWH 196 (259)
T ss_pred -------------Cc------cccCcc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcC---CCEEE
Confidence 00 000001 011234899998766653 2232 23456777764 35777
Q ss_pred EEeCCCCcc
Q 004149 740 IVFPNDVHG 748 (771)
Q Consensus 740 ~~~~~~~H~ 748 (771)
++..+.||+
T Consensus 197 ~v~~~~GH~ 205 (259)
T PF12740_consen 197 FVAKDYGHM 205 (259)
T ss_pred EEeCCCCch
Confidence 788899996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=108.38 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=131.0
Q ss_pred CCCcEEEEEcCCCCCCCCCc-chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
...|++||+|||.+...... -...+..+.++||+|..++|--++. .......+.++...++|+.+.. -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHhc-c
Confidence 45699999999987654332 2234566779999999999876432 2234456889999999998864 3
Q ss_pred CCCeEEEEEcChhHHHHHHHHHh-CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHh
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
+.+++.+-|||.|+.+++.+.++ +..++.++++.++++++..+..+....+..+. + +...
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dlgLt-----------------~--~~ae 194 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDLGLT-----------------E--RNAE 194 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccccccCcc-----------------c--chhh
Confidence 45678999999999999988875 45589999999999988776554432211100 0 1111
Q ss_pred hcCc-cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 693 SKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 693 ~~sp-~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
..|+ +...+.++.|+|++.|++|.---++|.+.|..++++ .++..|++.+|.
T Consensus 195 ~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy 247 (270)
T KOG4627|consen 195 SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHY 247 (270)
T ss_pred hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchh
Confidence 2222 234677889999999999987778999999999987 678899999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=104.00 Aligned_cols=250 Identities=15% Similarity=0.151 Sum_probs=158.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC-CcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ-SQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+....++||++.||..... .-.+|.+..+ ..+...+... ..+ ..+.|--||++++..+++.+.
T Consensus 41 sqVNrLeiTpdk~~LAaa~~q---hvRlyD~~S~np~Pv~t~e~h~kNV----------taVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQ---HVRLYDLNSNNPNPVATFEGHTKNV----------TAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cceeeEEEcCCcchhhhccCC---eeEEEEccCCCCCceeEEeccCCce----------EEEEEeecCeEEEecCCCceE
Confidence 568889999999999875432 2345555532 2344444443 344 588999999999998888765
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCC-CCccceEEEecCCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPK-SLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~-~~~~~~~~wspDg~~~ 254 (771)
+ .|+.-.... ...-...+....++..|+-+|++++.....|++||+..... ..+ +|+ +..+.+++..|||+.
T Consensus 108 k--IWdlR~~~~-qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 108 K--IWDLRSLSC-QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSM- 181 (311)
T ss_pred E--EEeccCccc-chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcE-
Confidence 5 454332222 22223446667778888889999999999999999987743 334 444 457889999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
++-+. ..+..|++++-.. +..+.=....++..+.+.+....+|||+|+||..
T Consensus 182 ---l~a~n---------------nkG~cyvW~l~~~----------~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 182 ---LAAAN---------------NKGNCYVWRLLNH----------QTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ---EEEec---------------CCccEEEEEccCC----------CccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 77654 3346777776210 0000001123344567788899999999999998
Q ss_pred ecCCCCCCCCccccccceeeecCCC-CC-CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTN-GN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~-~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~ 412 (771)
+.+. .+++|+.++- .. +.++... .-.-...||.||++|+ +.+.+..
T Consensus 234 ssdk-----------tv~iwn~~~~~kle~~l~gh~--------------------rWvWdc~FS~dg~Ylv-Tassd~~ 281 (311)
T KOG0315|consen 234 SSDK-----------TVKIWNTDDFFKLELVLTGHQ--------------------RWVWDCAFSADGEYLV-TASSDHT 281 (311)
T ss_pred cCCc-----------eEEEEecCCceeeEEEeecCC--------------------ceEEeeeeccCccEEE-ecCCCCc
Confidence 8775 3566665442 00 1111110 0123557899999774 5555677
Q ss_pred eEEEEEECCCCcEEEec
Q 004149 413 QVIISVNVSSGELLRIT 429 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~ 429 (771)
.+|| ++..++..+..
T Consensus 282 ~rlW--~~~~~k~v~qy 296 (311)
T KOG0315|consen 282 ARLW--DLSAGKEVRQY 296 (311)
T ss_pred eeec--ccccCceeeec
Confidence 7787 45566655443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-09 Score=113.08 Aligned_cols=269 Identities=15% Similarity=0.222 Sum_probs=145.3
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+++++. .|+..... .....+..+.+..+.+....+...+ ......-..+++|||++|+ +.+..++.-.++.+
T Consensus 45 ~~~~~~-LY~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~-vany~~g~v~v~~l 116 (345)
T PF10282_consen 45 SPDGRR-LYVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDPDGRFLY-VANYGGGSVSVFPL 116 (345)
T ss_dssp -TTSSE-EEEEETTS----STTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECTTSSEEE-EEETTTTEEEEEEE
T ss_pred EeCCCE-EEEEEccc----cCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEecCCCEEE-EEEccCCeEEEEEc
Confidence 456654 44444321 1345666666655533333332221 1113346788999999985 55554465566777
Q ss_pred ecCCcceEEEecC-Cccccccc---CCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 130 WSQSQLEKEFHVP-QTVHGSVY---ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 130 ~~~~~~~~~~~~~-~~~~g~~~---~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
...|......... ..-.|..- ......++.|+|||++|+.. +.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dl-------------------------------- 163 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DL-------------------------------- 163 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ET--------------------------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ec--------------------------------
Confidence 6556555443210 00000000 00011378999999987543 32
Q ss_pred CCcCcccCCccCceEEEEEccCCc--eeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 206 EDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
+...|++++++... +.... ..+....+.+++|+|||+ .+|+.++. ...
T Consensus 164 ----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~-----~~Yv~~e~-------------s~~ 215 (345)
T PF10282_consen 164 ----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK-----YAYVVNEL-------------SNT 215 (345)
T ss_dssp ----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS-----EEEEEETT-------------TTE
T ss_pred ----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC-----EEEEecCC-------------CCc
Confidence 23567777776544 43310 145566788999999999 45555332 235
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCccee---cC---C---CCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVN---LT---E---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt---~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
|..++++. ..+..+. +. . ........++||||++| |.+++. ...|.
T Consensus 216 v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~---------~~sI~ 270 (345)
T PF10282_consen 216 VSVFDYDP---------------SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRG---------SNSIS 270 (345)
T ss_dssp EEEEEEET---------------TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECT---------TTEEE
T ss_pred EEEEeecc---------------cCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEecc---------CCEEE
Confidence 66666521 1222211 11 1 11145678999999976 566663 34577
Q ss_pred eeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 353 RIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 353 ~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+++++ ++..+. +..+.. .+.+ +..+.++|||++|+++....+...+|.+|.++|.++.+.
T Consensus 271 vf~~d~~~g~l~~--------~~~~~~--~G~~-------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLTL--------VQTVPT--GGKF-------PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEEE--------EEEEEE--SSSS-------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceEE--------EEEEeC--CCCC-------ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 77763 333221 111111 1222 346788999999988777778889999999999988765
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-10 Score=111.18 Aligned_cols=276 Identities=12% Similarity=0.065 Sum_probs=162.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+||++|++||-.+.. .+.-+|.+..++..+-...+ .+.+..| ..+.||||.++|+--..+.. .
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~~kl~~tl-vgh~~~V------~yi~wSPDdryLlaCg~~e~--~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVHFKLKKTL-VGHSQPV------SYIMWSPDDRYLLACGFDEV--L 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcceeeeeee-ecccCce------EEEEECCCCCeEEecCchHh--e
Confidence 568999999999999976543 34456766655552222222 1111112 58899999999876543332 2
Q ss_pred CCccCCCCCCCCCCccC-CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
..|+...+......... ........|.||.-..++|..+.+++.||+++.....-.+.. .-.+..++.++||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dlait~Dgk~---- 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLAITYDGKY---- 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEEEcCCCcE----
Confidence 23443333322222222 122235679999877778888899999999987643332111 124678899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++.+. .+.+|..++. ++...+.+-.....+.+...|.||+.+...-.
T Consensus 369 vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 369 VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEEEEcc-
Confidence 88776 2337888886 55555556666667889999999996544332
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
+..|++||++.....+.-.+... ..| +-.-||.--...++.+.+.++ ++|.
T Consensus 416 ----------~qei~LWDl~e~~lv~kY~Ghkq----------~~f-------iIrSCFgg~~~~fiaSGSED~--kvyI 466 (519)
T KOG0293|consen 416 ----------DQEIHLWDLEENKLVRKYFGHKQ----------GHF-------IIRSCFGGGNDKFIASGSEDS--KVYI 466 (519)
T ss_pred ----------cCeeEEeecchhhHHHHhhcccc----------cce-------EEEeccCCCCcceEEecCCCc--eEEE
Confidence 24589999884332221111100 000 112345433334666665554 4666
Q ss_pred EECCCCcEEEecCCCC-CceeeEEeecCCEEEEEEe
Q 004149 418 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~s 452 (771)
++..+|++.....+.. .+...++.|....++++++
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccC
Confidence 7888888765544432 4444555565555544443
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-10 Score=104.13 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=105.7
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~--~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|+++||...+..+.......+++++.+. .+..++++- ..++..+.++.+++.. .++.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~~ 60 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPEN 60 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCCC
Confidence 7999997665444445556667777664 455555543 1345555555555553 3445
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc----CCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhh
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 693 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (771)
+.|+|.|+||+.|.+++.+++ +++ |+++|.+....... ......| .+.+. ..........
T Consensus 61 ~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~----------~e~~~--~~~~~~~~l~- 124 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYT----------GESYE--LTEEHIEELK- 124 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCC----------Cccce--echHhhhhcc-
Confidence 999999999999999998874 444 88899876543221 1110000 00000 0011111111
Q ss_pred cCccccc-cCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 694 KSPISHI-SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 694 ~sp~~~~-~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
.+... ..-..++++++++.|++++...+...++. +..++.+|++|.+.. -.+.+..|.+|+
T Consensus 125 --~l~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 125 --ALEVPYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred --eEeccccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 11111 12246899999999999998666554432 344566788999874 346678888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-11 Score=125.62 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=119.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCC-CCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhh------
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGG-PHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ------ 586 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg-~~~~~~~~~~~~~~~la~~G----~~V~~~d~rG~~~~g~~~~~------ 586 (771)
|.++..++|.|+++...+++|+|+++||. .+.. .......+..+.+.| ..+++++..+.......+..
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~-~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFR-NGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSR 83 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHH-HHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTC
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCccccc-cchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccccc
Confidence 56688899999988788999999999994 1110 001112333344443 45666665443211111110
Q ss_pred cCCCCccccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-hhhcCCCCC
Q 004149 587 SLPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIP 663 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~~~~~~ 663 (771)
......+...+.+.+ +.+.++.++..+.+++.+|+|+||||+.|++++.++|+.|.++++.+|.++.. .+....+.
T Consensus 84 ~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~~~- 162 (251)
T PF00756_consen 84 RADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPSDD- 162 (251)
T ss_dssp BCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHSTC-
T ss_pred ccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcCCc-
Confidence 001111111223322 55667777766666669999999999999999999999999999999987653 11110000
Q ss_pred cchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc-----cccCCCCcEEEEeeCCCCccC----------cHHHHHHHH
Q 004149 664 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVP----------VSNGLQYAR 728 (771)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i~~P~Lii~G~~D~~vp----------~~~~~~~~~ 728 (771)
..+...++.. ....-..++++..|+.|.... .....++.+
T Consensus 163 -------------------------~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 217 (251)
T PF00756_consen 163 -------------------------EAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQ 217 (251)
T ss_dssp -------------------------GHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHH
Confidence 0111111111 112234678999999998432 123344445
Q ss_pred HHHhCCCCEEEEEeCCCCccC
Q 004149 729 ALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.|+..+.+..+..++ ++|..
T Consensus 218 ~l~~~g~~~~~~~~~-G~H~~ 237 (251)
T PF00756_consen 218 LLKAKGIPHTYHVFP-GGHDW 237 (251)
T ss_dssp HCCCEECTTESEEEH-SESSH
T ss_pred HHHHcCCCceEEEec-Cccch
Confidence 555667788888887 46743
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-08 Score=101.03 Aligned_cols=228 Identities=14% Similarity=0.179 Sum_probs=135.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec---CCc-ccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV---PQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
...++++++|+.+ |+.+...+.-.++.+.+.|.....++. ... .|..- .-.-.-...++|||++|+..
T Consensus 91 p~yvsvd~~g~~v-f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ-~~~h~H~a~~tP~~~~l~v~------ 162 (346)
T COG2706 91 PCYVSVDEDGRFV-FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ-ESPHVHSANFTPDGRYLVVP------ 162 (346)
T ss_pred CeEEEECCCCCEE-EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc-cCCccceeeeCCCCCEEEEe------
Confidence 3678999999988 555554455556666555655544432 111 11000 00001266799999877664
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc--CCCCCCccceEEEecCCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~wspDg~~~ 254 (771)
|. +...|++++++.|...... ..+...+...++|+|+||
T Consensus 163 ------------------------------DL-------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-- 203 (346)
T COG2706 163 ------------------------------DL-------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-- 203 (346)
T ss_pred ------------------------------ec-------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc--
Confidence 22 2367888888888766552 123445788999999999
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC---------CCccccceeec
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---------SISSAFFPRFS 325 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~---------~~~~~~~p~~S 325 (771)
++|+-.+- +..-.+|.++- ..++.++|.. +.........|
T Consensus 204 ---~aY~v~EL-----------~stV~v~~y~~-----------------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 204 ---YAYLVNEL-----------NSTVDVLEYNP-----------------AVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred ---EEEEEecc-----------CCEEEEEEEcC-----------------CCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 66655322 22223444442 3355444321 12245678899
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
|||+.| |.+++. +..-.+|.+|-.++... ++. ...+.+.+| ..+.++++|+.|++
T Consensus 253 ~dGrFL-YasNRg-------~dsI~~f~V~~~~g~L~--------~~~--~~~teg~~P-------R~F~i~~~g~~Lia 307 (346)
T COG2706 253 PDGRFL-YASNRG-------HDSIAVFSVDPDGGKLE--------LVG--ITPTEGQFP-------RDFNINPSGRFLIA 307 (346)
T ss_pred CCCCEE-EEecCC-------CCeEEEEEEcCCCCEEE--------EEE--EeccCCcCC-------ccceeCCCCCEEEE
Confidence 999976 777774 22223344444443321 111 111223333 57789999998888
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCC
Q 004149 406 SSIWGSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
+....+...+|.+|..||+++.+...
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEecccc
Confidence 87777888999999999999988653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-08 Score=105.02 Aligned_cols=257 Identities=14% Similarity=0.056 Sum_probs=133.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....++||||+.|+...... +.-.+|.++..+....+-...... ....+.|+|||+.|+....
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~--------~p~~i~~~~~g~~l~v~~~------- 99 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPG--------SPTHISTDHQGRFLFSASY------- 99 (330)
T ss_pred CCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCC--------CceEEEECCCCCEEEEEEc-------
Confidence 456679999999885544322 333335554333332222211110 0147899999997765432
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-Ccee-eccCCCCCCccceEEEecCCCCCccE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~~~~-~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.+++++. +... .+...+........+++|||+.
T Consensus 100 ------------------------------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~---- 139 (330)
T PRK11028 100 ------------------------------------NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT---- 139 (330)
T ss_pred ------------------------------------CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE----
Confidence 125777888753 2221 1110222234556789999986
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-------ecCCCCccccceeecCCCCE
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~lt~~~~~~~~p~~SpDG~~ 330 (771)
++... . ....|+++|+. ..+... ++. ........+|+|||++
T Consensus 140 l~v~~-~-------------~~~~v~v~d~~----------------~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 140 LWVPC-L-------------KEDRIRLFTLS----------------DDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQY 188 (330)
T ss_pred EEEee-C-------------CCCEEEEEEEC----------------CCCcccccCCCceecC-CCCCCceEEECCCCCE
Confidence 55443 2 22378888872 222221 111 1233567899999997
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
++... .. ...|.+++++.+... + ..+..+...+ ..+++- .....+.++|||++||.+....
T Consensus 189 lyv~~-~~---------~~~v~v~~~~~~~~~-~----~~~~~~~~~p--~~~~~~--~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 189 AYCVN-EL---------NSSVDVWQLKDPHGE-I----ECVQTLDMMP--ADFSDT--RWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred EEEEe-cC---------CCEEEEEEEeCCCCC-E----EEEEEEecCC--CcCCCC--ccceeEEECCCCCEEEEecCCC
Confidence 75544 32 256888887632110 0 0011111011 111110 0112466899999887764445
Q ss_pred CeeEEEEEECCCCcEEEec--CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 411 SSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~--~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
+...+|.++.+++..+.+. ..........+++||++|+.+.... ..+.++++
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~---~~v~v~~~ 303 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS---HHISVYEI 303 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC---CcEEEEEE
Confidence 5666777766555443322 1111223457899999998876432 23555444
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.5e-09 Score=109.29 Aligned_cols=256 Identities=9% Similarity=0.077 Sum_probs=135.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.+|||+.|+... .. ...+..++++ +.+....+...+.+ +.....+++|||++|+.... .++.-.+|.
T Consensus 42 ~spd~~~lyv~~-~~-------~~~i~~~~~~-~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~-~~~~v~v~~ 108 (330)
T PRK11028 42 ISPDKRHLYVGV-RP-------EFRVLSYRIA-DDGALTFAAESPLP---GSPTHISTDHQGRFLFSASY-NANCVSVSP 108 (330)
T ss_pred ECCCCCEEEEEE-CC-------CCcEEEEEEC-CCCceEEeeeecCC---CCceEEEECCCCCEEEEEEc-CCCeEEEEE
Confidence 467887765432 21 2355555564 22222222111111 23567899999998865543 223333444
Q ss_pred EecCCcceEEEe-c--CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 129 LWSQSQLEKEFH-V--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 129 ~~~~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
+..++....... . .... .+..++|||++|+....
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~----------~~~~~~p~g~~l~v~~~--------------------------------- 145 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGC----------HSANIDPDNRTLWVPCL--------------------------------- 145 (330)
T ss_pred ECCCCCCCCceeeccCCCcc----------cEeEeCCCCCEEEEeeC---------------------------------
Confidence 432332222221 1 1122 36789999987765422
Q ss_pred CCcCcccCCccCceEEEEEccC-Cceeecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 206 EDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
....|++||+++ +.+.... ..+....+..++|+|||+. + |++++. ..
T Consensus 146 ----------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~----l-yv~~~~-------------~~ 197 (330)
T PRK11028 146 ----------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY----A-YCVNEL-------------NS 197 (330)
T ss_pred ----------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE----E-EEEecC-------------CC
Confidence 236899999876 3332110 0122335678899999995 4 444322 23
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCccee---cC---CC---CccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPVVN---LT---ES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt---~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
.|..++++. .+++.+. +. .. ........++|||++|+. +++. ...|
T Consensus 198 ~v~v~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv-~~~~---------~~~I 252 (330)
T PRK11028 198 SVDVWQLKD---------------PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA-CDRT---------ASLI 252 (330)
T ss_pred EEEEEEEeC---------------CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE-ecCC---------CCeE
Confidence 676666621 1222211 11 10 111224678999997655 4442 2457
Q ss_pred eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 352 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 352 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.+++++..+... .++..... +. ....+.++|||++|+.+....+...+|.++..+|.++.+.
T Consensus 253 ~v~~i~~~~~~~------~~~~~~~~---~~-------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 253 SVFSVSEDGSVL------SFEGHQPT---ET-------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred EEEEEeCCCCeE------EEeEEEec---cc-------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 777775433211 01111111 00 2346789999999988766577788999988888876653
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-08 Score=111.85 Aligned_cols=273 Identities=14% Similarity=0.058 Sum_probs=158.4
Q ss_pred eEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++||||+++||....++ +...+++++ ..|+. +.+. .... +.++.|++||+.++|...+...+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--l~d~i~~~~---------~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--LPDGIENPK---------FSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--EEEEEEEEE---------SEEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--cCCcccccc---------cceEEEeCCCCEEEEEEeCccccc
Confidence 35789999999999876653 345566666 44432 2211 1111 124899999999999876553210
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee--eccCCCCCCc-cceEEEecCCCCCc
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPKSLS-VGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~--~l~~~~~~~~-~~~~~wspDg~~~~ 255 (771)
. .......||.+.+.++... .+-..+.... .-.+.+|+||+.
T Consensus 196 ~---------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~-- 240 (414)
T PF02897_consen 196 S---------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY-- 240 (414)
T ss_dssp ----------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE--
T ss_pred c---------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE--
Confidence 0 0112468999999887543 3311112212 446789999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+..... .+.+|++++.... ......+.|........... ...|..+++.+
T Consensus 241 --l~i~~~~~~~-----------~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~~~~~v-~~~~~~~yi~T 294 (414)
T PF02897_consen 241 --LFISSSSGTS-----------ESEVYLLDLDDGG------------SPDAKPKLLSPREDGVEYYV-DHHGDRLYILT 294 (414)
T ss_dssp --EEEEEESSSS-----------EEEEEEEECCCTT------------TSS-SEEEEEESSSS-EEEE-EEETTEEEEEE
T ss_pred --EEEEEEcccc-----------CCeEEEEeccccC------------CCcCCcEEEeCCCCceEEEE-EccCCEEEEee
Confidence 7766533221 2589999983100 00135566654333322222 12277888888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
+.. ....+|+.+++....... ... ++....++ ..-..++..+.+|++....++...|
T Consensus 295 n~~-------a~~~~l~~~~l~~~~~~~----~~~---~l~~~~~~---------~~l~~~~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 295 NDD-------APNGRLVAVDLADPSPAE----WWT---VLIPEDED---------VSLEDVSLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp -TT--------TT-EEEEEETTSTSGGG----EEE---EEE--SSS---------EEEEEEEEETTEEEEEEEETTEEEE
T ss_pred CCC-------CCCcEEEEeccccccccc----cee---EEcCCCCc---------eeEEEEEEECCEEEEEEEECCccEE
Confidence 865 235689999987655310 000 01000000 0011244567789999889999999
Q ss_pred EEEECC-CCcEEEecCCCC-CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 416 ISVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 416 ~~~d~~-tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
..+++. +.....+..... .+.......+++.+++..+++.+|+.+|.+++.+++
T Consensus 352 ~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 352 RVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 999998 666666654433 223333446789999999999999999999987764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-10 Score=135.63 Aligned_cols=235 Identities=16% Similarity=0.195 Sum_probs=133.3
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCCCcchH-----HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 521 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 521 l~~~~~~P~~~~~--~~~~p~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
++.+.|.|..... ....|.||++||.+.... .|.. .+..|+++||.|+++|+. .+. ... .......
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~--~~d~~~~~s~v~~L~~~g~~v~~~d~G-~~~--~~~--~~~~~~l 121 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSAD--MWDVTRDDGAVGILHRAGLDPWVIDFG-SPD--KVE--GGMERNL 121 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCcc--ceecCCcccHHHHHHHCCCEEEEEcCC-CCC--hhH--cCccCCH
Confidence 5566777763211 234578999999765533 3332 378899999999999963 211 110 0000000
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchhhh----------------
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALM---------------- 656 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~---------------- 656 (771)
...+..+.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+|+.+..+|+...
T Consensus 122 ~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~ 198 (994)
T PRK07868 122 ADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADF 198 (994)
T ss_pred HHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhccccc
Confidence 111233344444444332 35799999999999999888754 5589988876655443110
Q ss_pred -----hcCCCCCcchhh------------h-------hccC-CCC------CcCCCC----CC-----hhhHHHHhhcCc
Q 004149 657 -----VGTTDIPDWCYV------------E-------SYGS-KGK------DSFTES----PS-----VEDLTRFHSKSP 696 (771)
Q Consensus 657 -----~~~~~~~~~~~~------------~-------~~~~-~~~------~~~~~~----~~-----~~~~~~~~~~sp 696 (771)
.....++.|... . .+.. ... ..+... .. .+....+...+.
T Consensus 199 ~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~ 278 (994)
T PRK07868 199 MADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNR 278 (994)
T ss_pred chhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCc
Confidence 000111111000 0 0000 000 000000 00 001111111111
Q ss_pred c-----------ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE-EEeCCCCccCC--CCCChHHHHHHH
Q 004149 697 I-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV-IVFPNDVHGIE--RPQSDFESFLNI 762 (771)
Q Consensus 697 ~-----------~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~~--~~~~~~~~~~~i 762 (771)
. ..+.++++|+|+++|++|.++|++.++.+.+.+.. .++ .+++++||... ......+.|..+
T Consensus 279 ~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i 354 (994)
T PRK07868 279 MMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTV 354 (994)
T ss_pred ccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHH
Confidence 1 13678899999999999999999999988776643 454 57789999743 455667899999
Q ss_pred HHHHHHH
Q 004149 763 GLWFKKY 769 (771)
Q Consensus 763 ~~wl~~~ 769 (771)
.+||.++
T Consensus 355 ~~wl~~~ 361 (994)
T PRK07868 355 ADWVKWL 361 (994)
T ss_pred HHHHHHh
Confidence 9999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=102.72 Aligned_cols=266 Identities=15% Similarity=0.135 Sum_probs=156.5
Q ss_pred eeEEEEEEeecCCCC----ccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec-CC
Q 004149 71 KKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQ 143 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~ 143 (771)
++.+.+|.+..++.+ .++++... ..+...+.|+||.+.+-.+-+. ...+| .+++.++.+-. ..
T Consensus 37 Dk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 37 DKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred ceEEEEEEeccCccccCceeeeeeccc-----eEecceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecCC
Confidence 356666666555332 13443322 4577889999999875544333 67777 34455444433 44
Q ss_pred cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC-CCCCCcccccCCcC--cccCCccCceE
Q 004149 144 TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWG--ETYAGKRQPSL 220 (771)
Q Consensus 144 ~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g--~~~~~~~~~~l 220 (771)
++ .+++||||.++|+..+.+++.+ .|+....-.-....+. ..|...+.|+|.-. ..+...-+..+
T Consensus 107 dV----------lsva~s~dn~qivSGSrDkTik--lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 107 DV----------LSVAFSTDNRQIVSGSRDKTIK--LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTV 174 (315)
T ss_pred ce----------EEEEecCCCceeecCCCcceee--eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceE
Confidence 55 5999999999999988877654 3332111111111112 67777788888732 22334456789
Q ss_pred EEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhh
Q 004149 221 FVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 221 ~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
-+||+.+-+.+.-- ......+...+.||||.. ++..+ ..+.++++|+
T Consensus 175 KvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL------------- 221 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDL------------- 221 (315)
T ss_pred EEEccCCcchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEc-------------
Confidence 99999988776652 234457788999999997 66643 4458899998
Q ss_pred cCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCC
Q 004149 301 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 380 (771)
Q Consensus 301 ~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (771)
+.++.-.-.+....+.+.+|||.-=+|+-... ..|.+||+.++....-. ..+.+- +.
T Consensus 222 ----~~~k~lysl~a~~~v~sl~fspnrywL~~at~------------~sIkIwdl~~~~~v~~l-~~d~~g-----~s- 278 (315)
T KOG0279|consen 222 ----NEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA------------TSIKIWDLESKAVVEEL-KLDGIG-----PS- 278 (315)
T ss_pred ----cCCceeEeccCCCeEeeEEecCCceeEeeccC------------CceEEEeccchhhhhhc-cccccc-----cc-
Confidence 44443222234556889999998655543332 23888998876542110 000000 00
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 381 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 381 ~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..-.+.+| -+++||+||.+||. ...++..++|.+
T Consensus 279 ~~~~~~~c---lslaws~dG~tLf~-g~td~~irv~qv 312 (315)
T KOG0279|consen 279 SKAGDPIC---LSLAWSADGQTLFA-GYTDNVIRVWQV 312 (315)
T ss_pred cccCCcEE---EEEEEcCCCcEEEe-eecCCcEEEEEe
Confidence 00000111 26789999998854 344555666654
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-10 Score=103.82 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=136.2
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.-.||..+.+..|... ++.+--+++-|+.+. ....|.+.+..++++||.|+.+||||.+++.........-.+.
T Consensus 11 ~~~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~ 84 (281)
T COG4757 11 PAPDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYL 84 (281)
T ss_pred ccCCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchh
Confidence 3457788888777533 223323334454433 2346777888999999999999999976654332222222222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-CCCC---cchhhh
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIP---DWCYVE 669 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~~~~---~~~~~~ 669 (771)
.-...|+.++++++.+.. ..-....+|||+||++...+ .+++..-.++|..++. .+....+. .... -|....
T Consensus 85 DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~-~~~~k~~a~~vfG~ga-gwsg~m~~~~~l~~~~l~~lv~ 160 (281)
T COG4757 85 DWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLL-GQHPKYAAFAVFGSGA-GWSGWMGLRERLGAVLLWNLVG 160 (281)
T ss_pred hhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccc-ccCcccceeeEecccc-ccccchhhhhcccceeeccccc
Confidence 334678999999988742 24568999999999976644 4456322333333221 12111111 0000 011000
Q ss_pred h----ccCCCCCcCCCC----CC--hhhHHHHh------hcCcc-----ccccCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004149 670 S----YGSKGKDSFTES----PS--VEDLTRFH------SKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 670 ~----~~~~~~~~~~~~----~~--~~~~~~~~------~~sp~-----~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~ 728 (771)
. +....-..+.+. |. ..++..+. ..+|. .....+++|++.+...+|+.+|+...+.|..
T Consensus 161 p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~ 240 (281)
T COG4757 161 PPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFAS 240 (281)
T ss_pred cchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHH
Confidence 0 000000001111 10 11222222 12222 2356788999999999999999999999988
Q ss_pred HHHhCCCCEEEEEeCCC----CccCCCCCChHHHHHHHHHHH
Q 004149 729 ALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~wl 766 (771)
..+++ +.++..++.+ ||+-..-+..+..+++++.||
T Consensus 241 ~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 241 FYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 88765 4666666655 786443333356788999887
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=111.46 Aligned_cols=204 Identities=19% Similarity=0.235 Sum_probs=119.8
Q ss_pred HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHH
Q 004149 557 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 557 ~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
..+..+.++||+|+++||.|.+ ..+. ........+-|.++|.+.+... +.....+++++|+|.||+.+++++.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg---~~y~---~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLG---TPYL---NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCC---Cccc---CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 3566777999999999999843 3321 1111112233444444444332 2123468999999999999988775
Q ss_pred hC----CCc---eeEEEecCCccchhhhhcCCCCCcch----------------------------------------hh
Q 004149 636 QA----PDK---FVAAAARNPLCNLALMVGTTDIPDWC----------------------------------------YV 668 (771)
Q Consensus 636 ~~----p~~---~~a~v~~~p~~~~~~~~~~~~~~~~~----------------------------------------~~ 668 (771)
.. |++ +.++++.+|..++..+....+...+. ..
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~ 170 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLA 170 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 42 554 78888888888875443322111000 00
Q ss_pred hhccCCCCCcC--------CCCCC-h--hhH-HHHhhcCc-cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC-
Q 004149 669 ESYGSKGKDSF--------TESPS-V--EDL-TRFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG- 734 (771)
Q Consensus 669 ~~~~~~~~~~~--------~~~~~-~--~~~-~~~~~~sp-~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g- 734 (771)
..........+ ..... . ... ..+.+.+. ...-..-+.|++|.||..|.+||+....++++.+.++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~ 250 (290)
T PF03583_consen 171 DIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGG 250 (290)
T ss_pred HHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCC
Confidence 00000000000 00000 0 001 11111111 00111235899999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
.+++++.++..+|..... ......+.||...+
T Consensus 251 a~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 251 ADVEYVRYPGGGHLGAAF----ASAPDALAWLDDRF 282 (290)
T ss_pred CCEEEEecCCCChhhhhh----cCcHHHHHHHHHHH
Confidence 799999999999965422 23467788887765
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-10 Score=103.01 Aligned_cols=212 Identities=16% Similarity=0.149 Sum_probs=127.4
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECC--CCCCCCChh--hhhc-CCC
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNY--RGSLGFGEE--ALQS-LPG 590 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~V~~~d~--rG~~~~g~~--~~~~-~~~ 590 (771)
..+.--+|.|+....+++.|++.++.|-... ...+. ..-+...++|++|+.||- ||..--|++ |--. ..+
T Consensus 26 c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT--~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAG 103 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGKRCPVLFYLSGLTCT--HENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAG 103 (283)
T ss_pred cceEEEEecCCCcccCCcCceEEEecCCccc--chhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCce
Confidence 4456668888877777889999999995543 22222 233445689999999994 664322221 1000 000
Q ss_pred ---CccccchhhHHHHHHHHHH---------cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc
Q 004149 591 ---KVGSQDVNDVLTAIDHVID---------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658 (771)
Q Consensus 591 ---~~~~~~~~D~~~~i~~l~~---------~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~ 658 (771)
+.....+..--+..+|+.+ .-.+|+.+++|.||||||+-|+..+.+.|.+++.+.+.+|+++....
T Consensus 104 FYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c-- 181 (283)
T KOG3101|consen 104 FYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC-- 181 (283)
T ss_pred eEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC--
Confidence 0000011111222333322 23378999999999999999999999999999999999999875432
Q ss_pred CCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc---cccCCCCcEEEEeeCCCCccCcHHH--HHHHHHHHhC
Q 004149 659 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---HISKVKTPTIFLLGAQDLRVPVSNG--LQYARALREK 733 (771)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~~~i~~P~Lii~G~~D~~vp~~~~--~~~~~~l~~~ 733 (771)
.| +......|.+. +...|...++.. .......-+||-.|..|.+.+ +|. +.+.++.+..
T Consensus 182 -----pW------GqKAf~gYLG~----~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~ 245 (283)
T KOG3101|consen 182 -----PW------GQKAFTGYLGD----NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKAT 245 (283)
T ss_pred -----cc------hHHHhhcccCC----ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhcc
Confidence 12 22222223332 233444444443 344445569999999999875 221 2344444422
Q ss_pred -CCCEEEEEeCCCCccCC
Q 004149 734 -GVETKVIVFPNDVHGIE 750 (771)
Q Consensus 734 -g~~~~~~~~~~~~H~~~ 750 (771)
..++.+...++-+|.+.
T Consensus 246 ~~~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 246 WQAPVVFRLQEGYDHSYY 263 (283)
T ss_pred ccccEEEEeecCCCccee
Confidence 35788888889999765
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=107.13 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=165.9
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec-CCcccccccCCCcccceeecCC--CCeEEEEecCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEP 174 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~ 174 (771)
.+....||+|++.||..+-.+ ...+| .+.+....+.. ...+ +++.|+|. +..||..+.+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~gH~~~v----------~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRGHTSRV----------GAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred cceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEeccccce----------eeEEEccCCCccceeeeccCC
Confidence 467788999999998766543 44555 22233333332 2222 68999997 67888888877
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..+ .|.............+..-...+.|.|++.-+.+...+..=.+||+.++....+. -....++...+|.|||.
T Consensus 242 tvk--lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGS-- 316 (459)
T KOG0272|consen 242 TVK--LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGS-- 316 (459)
T ss_pred cee--eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCc--
Confidence 655 3433222222233334444556778888766666666777788999998765552 22344788999999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
|+.++- .+.-..|| |+ -+|. .-.|..+...+.++.|||+|-.||.
T Consensus 317 ---L~~tGG------------lD~~~RvW--Dl-----------------Rtgr~im~L~gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 317 ---LAATGG------------LDSLGRVW--DL-----------------RTGRCIMFLAGHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred ---eeeccC------------ccchhhee--ec-----------------ccCcEEEEecccccceeeEeECCCceEEee
Confidence 554431 01112344 44 3444 4556667778999999999999998
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
.+.++ ...+||+.......+.... ..-+..++|+|++...+++++.++..
T Consensus 363 gs~Dn-----------t~kVWDLR~r~~ly~ipAH-------------------~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 363 GSSDN-----------TCKVWDLRMRSELYTIPAH-------------------SNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred cCCCC-----------cEEEeeecccccceecccc-------------------cchhhheEecccCCeEEEEcccCcce
Confidence 77664 4667777654432221111 12356788999777788888899999
Q ss_pred EEEEEECCCCcE-EEecCCCCCceeeEEeecCCEEEEEE
Q 004149 414 VIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 414 ~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
+||. ..+... +.|....+-+.....++|+..++..+
T Consensus 413 kiWs--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 413 KIWS--TRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred eeec--CCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 9995 234433 33333334444456677777665443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.8e-09 Score=105.62 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=46.7
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+...+|||||++.|-+..++ .+++.+ ..|+..-.+.-.....|.| -.++||||+++++.++-++..+
T Consensus 193 V~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~l~~~~aHkGsI------falsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGELEDSDAHKGSI------FALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEEecCCCCccccE------EEEEECCCCceEEEecCCceEE
Confidence 67899999999998875543 366666 5555444444333444455 6899999999999988766543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-08 Score=102.03 Aligned_cols=259 Identities=17% Similarity=0.182 Sum_probs=141.4
Q ss_pred cceEEEeCCCCCeEEEEecC--CCCCCeEEEEecC-CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQ-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.....++||++++|..+.+. +.+.-..|.+... +....+-.....-.+. -.++.+|||+.|+.+...
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p-------~~i~~~~~g~~l~vany~--- 107 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP-------CHIAVDPDGRFLYVANYG--- 107 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE-------EEEEECTTSSEEEEEETT---
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc-------EEEEEecCCCEEEEEEcc---
Confidence 34567789999988666554 2233445555533 5555544433111101 267899999977665321
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-Cceeecc--------C----CCCCCccc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVK--------G----IPKSLSVG 243 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~--------~----~~~~~~~~ 243 (771)
...+.+++++. |.+.... + ........
T Consensus 108 ----------------------------------------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 108 ----------------------------------------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp ----------------------------------------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred ----------------------------------------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 25666676654 4333220 0 01122455
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee---cC-CCCccc
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN---LT-ESISSA 319 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt-~~~~~~ 319 (771)
++.++|||+. + |+... ....|+.++++. .++++.. +. ......
T Consensus 148 ~v~~~pdg~~----v-~v~dl-------------G~D~v~~~~~~~---------------~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 148 QVVFSPDGRF----V-YVPDL-------------GADRVYVYDIDD---------------DTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EEEE-TTSSE----E-EEEET-------------TTTEEEEEEE-T---------------TS-TEEEEEEEECSTTSSE
T ss_pred eEEECCCCCE----E-EEEec-------------CCCEEEEEEEeC---------------CCceEEEeeccccccCCCC
Confidence 7899999995 5 45432 223677777731 2222322 11 223347
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
+..+|+|||++++.+ ++. .+.|.++++. ++..+.+ ..+..... .+.+. .....+.+|
T Consensus 195 Rh~~f~pdg~~~Yv~-~e~---------s~~v~v~~~~~~~g~~~~~-----~~~~~~~~----~~~~~--~~~~~i~is 253 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVV-NEL---------SNTVSVFDYDPSDGSLTEI-----QTISTLPE----GFTGE--NAPAEIAIS 253 (345)
T ss_dssp EEEEE-TTSSEEEEE-ETT---------TTEEEEEEEETTTTEEEEE-----EEEESCET----TSCSS--SSEEEEEE-
T ss_pred cEEEEcCCcCEEEEe-cCC---------CCcEEEEeecccCCceeEE-----EEeeeccc----ccccc--CCceeEEEe
Confidence 889999999976554 443 2457777766 3321111 11111111 11110 023467789
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC---CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~---~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
|||++||++....+...+|.+|..+|+++.+..- ........++++|++|+.+....+. |.+++.
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~---v~vf~~ 321 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT---VSVFDI 321 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE---EEEEEE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe---EEEEEE
Confidence 9999998887777777888888888888876432 1224556789999999887655444 555444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-08 Score=105.01 Aligned_cols=268 Identities=16% Similarity=0.186 Sum_probs=151.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....|+|+|+.|++.... +.-.+|.+ ..+............ ...+.|+|+++.|+..+.+....
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~--g~i~i~~~-~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~~~~i~- 76 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGD--GTIKVWDL-ETGELLRTLKGHTGP---------VRDVAASADGTYLASGSSDKTIR- 76 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecC--cEEEEEEe-eCCCcEEEEecCCcc---------eeEEEECCCCCEEEEEcCCCeEE-
Confidence 457889999999999887643 22222322 222222222211111 14889999998888877544321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCcc-CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~-~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|+............+........|.++ +..++... ...|.+||+.+++..... ......+..+.|+|+++.
T Consensus 77 -i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~---- 149 (289)
T cd00200 77 -LWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF---- 149 (289)
T ss_pred -EEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE----
Confidence 2222211111111122222334556666 34444333 789999999866654441 223446788999999764
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ....|+++|+ ..++ ...+......+....|+|+|+.|++.+.
T Consensus 150 l~~~~---------------~~~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 150 VASSS---------------QDGTIKLWDL-----------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEc---------------CCCcEEEEEc-----------------cccccceeEecCccccceEEECCCcCEEEEecC
Confidence 44332 2236888887 4333 3444445556888999999999888776
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+ ..|.++|+.++......... ...+..+.|++++. +++....++. |+
T Consensus 198 ~-----------~~i~i~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~-~~~~~~~~~~--i~ 244 (289)
T cd00200 198 D-----------GTIKLWDLSTGKCLGTLRGH-------------------ENGVNSVAFSPDGY-LLASGSEDGT--IR 244 (289)
T ss_pred C-----------CcEEEEECCCCceecchhhc-------------------CCceEEEEEcCCCc-EEEEEcCCCc--EE
Confidence 3 35888888765432221110 01245678999965 5455443444 55
Q ss_pred EEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEE
Q 004149 417 SVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l~~-~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.+++.+++...... ....+....++++++.++...
T Consensus 245 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 55666655444333 233345566777777665544
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-10 Score=110.54 Aligned_cols=223 Identities=15% Similarity=0.187 Sum_probs=85.8
Q ss_pred CCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCccccchhhHHHHHHHHHHcC--
Q 004149 536 CDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 611 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~V~~~d~rG~-~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 611 (771)
...+|||+-|-...... .....++..|...||.|+.+.++-+ .|+|... ...+++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~S--------L~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSS--------LDRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcch--------hhhHHHHHHHHHHHHHHhhcc
Confidence 45689999884433223 3444567777778999999998852 3454332 2357999999999999872
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhCC-----CceeEEEecCCccchhhhhcCCCC-Ccch----hhhhc-----cCCC-
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALMVGTTDI-PDWC----YVESY-----GSKG- 675 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~p~~~~~~~~~~~~~-~~~~----~~~~~-----~~~~- 675 (771)
....++|+|+|||-|.+-+++++.... ..+.++|+.+|+.|...+...... .... ....+ +...
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 135789999999999999999987642 569999999999886433221110 0000 00000 0000
Q ss_pred ----CCcCC-CCCChhhHHHHhhcCc----------------cccccCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhC
Q 004149 676 ----KDSFT-ESPSVEDLTRFHSKSP----------------ISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK 733 (771)
Q Consensus 676 ----~~~~~-~~~~~~~~~~~~~~sp----------------~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~ 733 (771)
...+. ..|. .....+.-.+| .....+++.|+|++.+++|+.||... -+++.++++..
T Consensus 184 p~~~~~~~~~~~Pi-TA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 184 PREFTPLVFYDTPI-TAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp ----GGTTT-SS----HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT------------------
T ss_pred eccccccccCCCcc-cHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceecccccccccccccccc
Confidence 00000 1111 11111110111 12456778899999999999998643 34566666554
Q ss_pred CC----CEEEEEeCCCCccCCCCCCh---HHHHHHHHHHHH
Q 004149 734 GV----ETKVIVFPNDVHGIERPQSD---FESFLNIGLWFK 767 (771)
Q Consensus 734 g~----~~~~~~~~~~~H~~~~~~~~---~~~~~~i~~wl~ 767 (771)
-. ....-++||+.|.+..+... ....+++..||+
T Consensus 263 ~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 263 TNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp -----------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccCC
Confidence 22 12345899999998865432 356667777764
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-11 Score=119.72 Aligned_cols=174 Identities=16% Similarity=0.241 Sum_probs=106.4
Q ss_pred cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEe
Q 004149 567 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646 (771)
Q Consensus 567 ~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 646 (771)
|.|+++|.||.+.+... ..........+|+.+.++.+++.. ..+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREAL--GIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHh--CCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 78999999995543210 001233345789999999988864 345599999999999999999999999999999
Q ss_pred cCCcc--ch-h---hhhc---CCCC----Cc------------ch----hhhhc-cCCCC-----CcCCCC--CCh----
Q 004149 647 RNPLC--NL-A---LMVG---TTDI----PD------------WC----YVESY-GSKGK-----DSFTES--PSV---- 685 (771)
Q Consensus 647 ~~p~~--~~-~---~~~~---~~~~----~~------------~~----~~~~~-~~~~~-----~~~~~~--~~~---- 685 (771)
.++.. .. . .... .... .. +. ..... ..... ..+... ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 00 0 0000 0000 00 00 00000 00000 000000 000
Q ss_pred --hhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 686 --EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 686 --~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
.....+...++...+..+++|+|+++|++|.++|+.....+.+.+.+ .++++++++||...
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~GH~~~ 217 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPN----SQLVLIEGSGHFAF 217 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTT----EEEEEETTCCSTHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC----CEEEECCCCChHHH
Confidence 00011122233345678999999999999999999888886666554 89999999999754
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=106.36 Aligned_cols=237 Identities=13% Similarity=0.129 Sum_probs=151.2
Q ss_pred ccceEEEeCCC--CCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....|+|. +..||..+.++ ...+|.-.+...+-++.... . .+..++|.|+|++|+..+.+.+-
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dg-----tvklw~~~~e~~l~~l~gH~-~------RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADG-----TVKLWKLSQETPLQDLEGHL-A------RVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred cceeeEEEccCCCccceeeeccCC-----ceeeeccCCCcchhhhhcch-h------hheeeeecCCCceeeecccccch
Confidence 56888999997 55677655543 45566322222222222111 1 12689999999999998877653
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~ 255 (771)
+ .|+...+........+........|.+|+.-..++.-+.-=.+||+.+|...-+ ..+. ..+-++.|||+|-.
T Consensus 286 R--lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNGy~-- 359 (459)
T KOG0272|consen 286 R--LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNGYH-- 359 (459)
T ss_pred h--hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--ecccccceeeEeECCCceE--
Confidence 3 566555666666667777777889999965555565566668899999987665 3443 36789999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecC-CCCEEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFLVFL 334 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~Sp-DG~~l~f~ 334 (771)
|+..+. +..+.||.+. .....-.+..+..-+..++|+| -|++|+..
T Consensus 360 --lATgs~-------------Dnt~kVWDLR------------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 360 --LATGSS-------------DNTCKVWDLR------------------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred --EeecCC-------------CCcEEEeeec------------------ccccceecccccchhhheEecccCCeEEEEc
Confidence 887661 2223444443 2233555666677789999999 67778777
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
+.+. .+.+|.-.+....+...+.. .-+.++..|+||..| .+++.+...+
T Consensus 407 syD~-----------t~kiWs~~~~~~~ksLaGHe-------------------~kV~s~Dis~d~~~i-~t~s~DRT~K 455 (459)
T KOG0272|consen 407 SYDN-----------TVKIWSTRTWSPLKSLAGHE-------------------GKVISLDISPDSQAI-ATSSFDRTIK 455 (459)
T ss_pred ccCc-----------ceeeecCCCcccchhhcCCc-------------------cceEEEEeccCCceE-EEeccCceee
Confidence 7664 24444444444332222221 123466789999855 5666777777
Q ss_pred EEE
Q 004149 415 IIS 417 (771)
Q Consensus 415 l~~ 417 (771)
||.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 774
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-07 Score=91.45 Aligned_cols=288 Identities=15% Similarity=0.093 Sum_probs=157.1
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccc
Q 004149 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSV 149 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 149 (771)
+.|+++.+++..++... ...-.+.+..+..+|+|+++.|..+-..+ .+.-.-|.++ ++|....+-......+..
T Consensus 16 ~gI~v~~ld~~~g~l~~---~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p- 91 (346)
T COG2706 16 QGIYVFNLDTKTGELSL---LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP- 91 (346)
T ss_pred CceEEEEEeCcccccch---hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-
Confidence 45666667644443221 11112335677889999999986554442 2444566776 446655444332211100
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-C
Q 004149 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-G 228 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~ 228 (771)
-.++.++||+.|+.+.... ..|-++.+.. |
T Consensus 92 ------~yvsvd~~g~~vf~AnY~~-------------------------------------------g~v~v~p~~~dG 122 (346)
T COG2706 92 ------CYVSVDEDGRFVFVANYHS-------------------------------------------GSVSVYPLQADG 122 (346)
T ss_pred ------eEEEECCCCCEEEEEEccC-------------------------------------------ceEEEEEcccCC
Confidence 2678999998665543221 2333333321 2
Q ss_pred ceeecc-------CCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 229 EVQAVK-------GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 229 ~~~~l~-------~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
.+..+. ..+. ..-.-...+.|||+. |+... + ..-+|+++++
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~----l~v~D-------L-------G~Dri~~y~~---------- 174 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY----LVVPD-------L-------GTDRIFLYDL---------- 174 (346)
T ss_pred ccccceeeeecCCCCCCccccCCccceeeeCCCCCE----EEEee-------c-------CCceEEEEEc----------
Confidence 221110 0011 111345679999996 65543 1 2226888888
Q ss_pred hhhcCCCCCCcceecC----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 298 ELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
+.|...... ......+...|.|+|+ ++|+-++- ++.-.+|.++-..++..++ -.
T Consensus 175 -------~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-~aY~v~EL-------~stV~v~~y~~~~g~~~~l-------Q~ 232 (346)
T COG2706 175 -------DDGKLTPADPAEVKPGAGPRHIVFHPNGK-YAYLVNEL-------NSTVDVLEYNPAVGKFEEL-------QT 232 (346)
T ss_pred -------ccCccccccccccCCCCCcceEEEcCCCc-EEEEEecc-------CCEEEEEEEcCCCceEEEe-------ee
Confidence 334332222 3344578899999999 45666554 1223344444333333221 11
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC--CCC-CceeeEEeecCCEEEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AES-NFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~--~~~-~~~~~~~s~d~~~l~~~ 450 (771)
+-.. .++|.|-. ....+..|+||+.||++....+...+|.|+..+|++..+.. ..+ ......++++|+.|+++
T Consensus 233 i~tl--P~dF~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 233 IDTL--PEDFTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred eccC--ccccCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 1111 23455421 23456689999988877666677889999999998776643 222 13445678899988888
Q ss_pred EeCCCCCCeEEEEEecc
Q 004149 451 SSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 451 ~s~~~~p~~l~~~~~~~ 467 (771)
....+. -.+|.++-.+
T Consensus 309 ~q~sd~-i~vf~~d~~T 324 (346)
T COG2706 309 NQKSDN-ITVFERDKET 324 (346)
T ss_pred ccCCCc-EEEEEEcCCC
Confidence 876666 3455554433
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-09 Score=98.48 Aligned_cols=117 Identities=26% Similarity=0.305 Sum_probs=88.7
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
+....++.|. ..+.+|+|+|+||..- ....|....+.++++||.|++|+.-... ..-+..++++
T Consensus 32 PkpLlI~tP~---~~G~yPVilF~HG~~l--~ns~Ys~lL~HIASHGfIVVAPQl~~~~-----------~p~~~~Ei~~ 95 (307)
T PF07224_consen 32 PKPLLIVTPS---EAGTYPVILFLHGFNL--YNSFYSQLLAHIASHGFIVVAPQLYTLF-----------PPDGQDEIKS 95 (307)
T ss_pred CCCeEEecCC---cCCCccEEEEeechhh--hhHHHHHHHHHHhhcCeEEEechhhccc-----------CCCchHHHHH
Confidence 3455688887 6788999999999432 2446777888999999999999975421 1123345788
Q ss_pred HHHHHHHHHHcC--------CCCCCeEEEEEcChhHHHHHHHHHhCC--CceeEEEecCCccc
Q 004149 600 VLTAIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLCN 652 (771)
Q Consensus 600 ~~~~i~~l~~~~--------~~d~~ri~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~p~~~ 652 (771)
..+.++|+.+.- ..+..+++++|||.||-.|..+|..+. -.|.++|.+.|+..
T Consensus 96 aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 96 AASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 889999987641 157789999999999999999998662 24788888888753
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-08 Score=94.23 Aligned_cols=263 Identities=14% Similarity=0.158 Sum_probs=162.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+-+...-||+|+++|+-.+..+ .+++|+ ..+..+.+.++.. |+..-+|||.|+.||...-+..=
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s~---------WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPSS---------WVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred cceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCce---------eEEEEEECCCCCeEEecCcCcee
Confidence 4578899999999998877665 677883 3444555555332 34688999999999986543211
Q ss_pred CCCCccCCC------CCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec-
Q 004149 177 SKPTFSLGS------TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP- 249 (771)
Q Consensus 177 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp- 249 (771)
..+.... .+..+....+..|..-..|..| +..+++.++....+||+++|+....- ......+-.+..+|
T Consensus 122 --siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 122 --SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPS 197 (343)
T ss_pred --EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCC
Confidence 0111110 0111223345555555556665 77888899999999999999876652 23344677889999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCC
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG 328 (771)
|++. .+-.+ | +..-+++|+ ..+. .+.+..+...+.+++|-|+|
T Consensus 198 ~~nt----FvSg~------------c---D~~aklWD~-----------------R~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 198 DGNT----FVSGG------------C---DKSAKLWDV-----------------RSGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred CCCe----EEecc------------c---ccceeeeec-----------------cCcceeEeecccccccceEEEccCC
Confidence 8887 44333 1 124556665 3344 45566677789999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
..++..+.+. ...++|+..+....+-.... .. ..+.++.||..|+ |+|...
T Consensus 242 ~afatGSDD~-----------tcRlyDlRaD~~~a~ys~~~-----------~~------~gitSv~FS~SGR-lLfagy 292 (343)
T KOG0286|consen 242 DAFATGSDDA-----------TCRLYDLRADQELAVYSHDS-----------II------CGITSVAFSKSGR-LLFAGY 292 (343)
T ss_pred CeeeecCCCc-----------eeEEEeecCCcEEeeeccCc-----------cc------CCceeEEEccccc-EEEeee
Confidence 9776655442 35567777765533322110 01 1366889999998 556554
Q ss_pred eCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCE
Q 004149 409 WGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDN 446 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~d~~~ 446 (771)
.+.+..+| |.-.++..-+ .....-++-...+|||--
T Consensus 293 ~d~~c~vW--Dtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 293 DDFTCNVW--DTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred cCCceeEe--eccccceEEEeeccCCeeEEEEECCCCcE
Confidence 44444444 6555555544 333344555677777753
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-09 Score=99.45 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=72.7
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
++..++-.|. ....|+++++|||+.+. -.|...+..+. ..-..|+++|.|| +|++-......--.....+
T Consensus 61 t~n~Y~t~~~----~t~gpil~l~HG~G~S~--LSfA~~a~el~s~~~~r~~a~DlRg---HGeTk~~~e~dlS~eT~~K 131 (343)
T KOG2564|consen 61 TFNVYLTLPS----ATEGPILLLLHGGGSSA--LSFAIFASELKSKIRCRCLALDLRG---HGETKVENEDDLSLETMSK 131 (343)
T ss_pred eEEEEEecCC----CCCccEEEEeecCcccc--hhHHHHHHHHHhhcceeEEEeeccc---cCccccCChhhcCHHHHHH
Confidence 5666666663 45679999999988774 46777777663 4567889999999 5544322111111223467
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh
Q 004149 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
|+.+.++++... .+..|.|+||||||.++.+.+..
T Consensus 132 D~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 132 DFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 888888777643 35679999999999999888764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.9e-09 Score=114.73 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=72.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-----
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----- 120 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~----- 120 (771)
.|.+|+||++++|+....+ ..+.+...||+.+. ++..+++|... ....|+|||||+.|+|+++..
T Consensus 354 spaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~---gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL---GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecC-CCCCcceEEEEEeC---CCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 5556889999999987666 33346778999764 33446776553 378899999999999987541
Q ss_pred ---CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 121 ---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 121 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+..+++.++ +++...+ .+...+ ..+.|||||++|||+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~I----------ssl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPI----------SELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCc----------CeEEECCCCCEEEEEE
Confidence 1344566655 4444333 222223 7999999999999985
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-08 Score=88.39 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=116.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC--CCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS--LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~--~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.-+||+.||.+..+.+......+..|+.+|+.|..++++=. --.|+. .+..-...-....+.++..|.+. .+
T Consensus 14 ~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r----kPp~~~~t~~~~~~~~~aql~~~--l~ 87 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR----KPPPGSGTLNPEYIVAIAQLRAG--LA 87 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC----CCcCccccCCHHHHHHHHHHHhc--cc
Confidence 35788889987777777777788899999999999997421 101100 01111112233445555666655 45
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEec-CCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhh
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 693 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (771)
..++.+-|+||||-++.+++..-...+.++++. .|+.- -++ | +..
T Consensus 88 ~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------------pGK---------P-----e~~-- 133 (213)
T COG3571 88 EGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------------PGK---------P-----EQL-- 133 (213)
T ss_pred CCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------------CCC---------c-----ccc--
Confidence 678999999999999999987543336666543 23310 011 1 111
Q ss_pred cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---------CCChHHHHHHHHH
Q 004149 694 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---------PQSDFESFLNIGL 764 (771)
Q Consensus 694 ~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---------~~~~~~~~~~i~~ 764 (771)
-..++..+++|+||.+|+.|++-..++...+ .| ..+++++++.++.|.+-- ..+.....+++..
T Consensus 134 --Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y--~l---s~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~ 206 (213)
T COG3571 134 --RTEHLTGLKTPTLITQGTRDEFGTRDEVAGY--AL---SDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAG 206 (213)
T ss_pred --hhhhccCCCCCeEEeecccccccCHHHHHhh--hc---CCceEEEEeccCccccccccccccccHHHHHHHHHHHHHH
Confidence 1356788999999999999998765544211 12 246899999999997642 1222334456777
Q ss_pred HHHH
Q 004149 765 WFKK 768 (771)
Q Consensus 765 wl~~ 768 (771)
|..+
T Consensus 207 ~~~~ 210 (213)
T COG3571 207 WARR 210 (213)
T ss_pred HHhh
Confidence 7654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9e-09 Score=103.79 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=161.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....|+-||..||+....+ ..++| ..|.....+.... |. +-.+.|+-+|.+|+-..-+++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~~Hk---gP------I~slKWnk~G~yilS~~vD~tt- 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLGQHK---GP------IFSLKWNKKGTYILSGGVDGTT- 300 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhhccC---Cc------eEEEEEcCCCCEEEeccCCccE-
Confidence 4588899999999999987765 67788 5555443333221 12 2589999999999887655432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-.|+............+.....++.|..+ .+-........|+|+-+....+..-. +.....+..+.|.|.|+-
T Consensus 301 -ilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk~n~tg~L---- 373 (524)
T KOG0273|consen 301 -ILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALKWNPTGSL---- 373 (524)
T ss_pred -EEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceee-ecccCceEEEEECCCCce----
Confidence 12332211111111111111122333322 12222223456777777665543331 335567888999999996
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+-.+.. ..-.||... ++.....|..+...+....|||+|.-. ...+.
T Consensus 374 LaS~SdD-------------~TlkiWs~~------------------~~~~~~~l~~Hskei~t~~wsp~g~v~-~n~~~ 421 (524)
T KOG0273|consen 374 LASCSDD-------------GTLKIWSMG------------------QSNSVHDLQAHSKEIYTIKWSPTGPVT-SNPNM 421 (524)
T ss_pred EEEecCC-------------CeeEeeecC------------------CCcchhhhhhhccceeeEeecCCCCcc-CCCcC
Confidence 6665521 112455443 455566777777778889999998631 11111
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
..... .....+.+.+||+..+........ +...++.++|||||++| .+.+.++...||
T Consensus 422 ~~~l~-sas~dstV~lwdv~~gv~i~~f~k-------------------H~~pVysvafS~~g~yl-AsGs~dg~V~iw- 479 (524)
T KOG0273|consen 422 NLMLA-SASFDSTVKLWDVESGVPIHTLMK-------------------HQEPVYSVAFSPNGRYL-ASGSLDGCVHIW- 479 (524)
T ss_pred CceEE-EeecCCeEEEEEccCCceeEeecc-------------------CCCceEEEEecCCCcEE-EecCCCCeeEec-
Confidence 10000 000123466777766554221111 11135788999999966 455566666676
Q ss_pred EECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC
Q 004149 418 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~ 453 (771)
+..++++.+-..+.+.+....|+.+|+.|....+.
T Consensus 480 -s~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 480 -STKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred -cccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 56688888777666666777889999888766653
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.1e-09 Score=112.68 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=169.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....|||||+.++...... +..+|. ......+..+ .+..- .+..++|||||+.|+-.+.+.+.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~~~~~~l-~~h~~------~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKSNLLREL-SGHTR------GVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCC-----cEEEeecccccchhhccc-ccccc------ceeeeEECCCCcEEEEecCCceE
Confidence 3466789999999988765443 555662 2221011111 11111 23689999999999888887765
Q ss_pred CCCCccC-CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 177 SKPTFSL-GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+ .|+. ......+.+..+..+.....|.++....+.+..+..+.+||+.+++..... ......+....|++||..
T Consensus 228 r--iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~-- 302 (456)
T KOG0266|consen 228 R--IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL-- 302 (456)
T ss_pred E--EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE--
Confidence 5 4554 222344566678888888899999767778888899999999998876662 233347788999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCc--cccceeecCCCCE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESIS--SAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~--~~~~p~~SpDG~~ 330 (771)
|+..+ .+..|.++|+ .++.. ..+..... .+....|||+|++
T Consensus 303 --l~s~s---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 303 --LVSAS---------------YDGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred --EEEcC---------------CCccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 66654 2336888887 56652 34443333 3788999999998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|+-...+ ..|..||+..+........... . .+ -...+..+++|+.+ ++...+
T Consensus 349 ll~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~----------~----~~--~~~~~~~~~~~~~i-~sg~~d 400 (456)
T KOG0266|consen 349 LLSASLD-----------RTLKLWDLRSGKSVGTYTGHSN----------L----VR--CIFSPTLSTGGKLI-YSGSED 400 (456)
T ss_pred EEEecCC-----------CeEEEEEccCCcceeeecccCC----------c----ce--eEecccccCCCCeE-EEEeCC
Confidence 8765544 3577888876654222111100 0 00 12234447788755 454445
Q ss_pred CeeEEEEEECCCCcEEEecCCC--CCceeeEEeecCCEEEEEEeCCCCCC
Q 004149 411 SSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~d~~~l~~~~s~~~~p~ 458 (771)
+. ++.+|+.++...+..... ..+....+.+..+.++......+..-
T Consensus 401 ~~--v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 401 GS--VYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred ce--EEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceE
Confidence 44 555577766544433332 22333445555555554443344433
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=114.66 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCC------Chhhhhc--------------CCCCccc
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF------GEEALQS--------------LPGKVGS 594 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~------g~~~~~~--------------~~~~~~~ 594 (771)
.++|+|||-||.++. ...|...+..||++||+|+++++|-.... ....... .......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 779999999997665 45788999999999999999999942211 1110000 0000000
Q ss_pred -----------cchhhHHHHHHHHHH--c------------------CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeE
Q 004149 595 -----------QDVNDVLTAIDHVID--M------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 595 -----------~~~~D~~~~i~~l~~--~------------------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 643 (771)
.-..|+..+++.|.+ . +.+|.++|+++|||+||..++.++.+. .+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 113456667766653 1 225678999999999999999888774 67999
Q ss_pred EEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHH
Q 004149 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 644 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 723 (771)
+|+..|..- |..+ .....++.|+|+|+.+. . --....
T Consensus 255 ~I~LD~W~~------------------------------Pl~~-----------~~~~~i~~P~L~InSe~-f-~~~~~~ 291 (379)
T PF03403_consen 255 GILLDPWMF------------------------------PLGD-----------EIYSKIPQPLLFINSES-F-QWWENI 291 (379)
T ss_dssp EEEES---T------------------------------TS-G-----------GGGGG--S-EEEEEETT-T---HHHH
T ss_pred EEEeCCccc------------------------------CCCc-----------ccccCCCCCEEEEECcc-c-CChhhH
Confidence 998877421 0000 01134678999998875 2 222222
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCC------CC------------CC----hHHHHHHHHHHHHHHhC
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIE------RP------------QS----DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~----~~~~~~~i~~wl~~~l~ 771 (771)
..+.+ +...+....++.+.|..|.-. .+ .. .....+.+++||++||+
T Consensus 292 ~~~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 292 FRMKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHHHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 22222 333445678899999999421 11 01 12334578899999974
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-09 Score=100.85 Aligned_cols=154 Identities=18% Similarity=0.314 Sum_probs=97.7
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC
Q 004149 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 236 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~ 236 (771)
.+.|+|+|+.|++.......+. ++.+. +...||.++..+.....+. +
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~------------------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKS------------------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeeccC------------------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 6789999999999876321110 00000 3468999988877766663 3
Q ss_pred CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC
Q 004149 237 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 316 (771)
Q Consensus 237 ~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 316 (771)
.....+.+++|||+|+. ++++.- ..+..|.++|+ ++.....+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g-------------~~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYG-------------SMPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEc-------------cCCcccEEEcC-----------------cccEeEeec--C
Confidence 34446899999999999 887741 12235667775 433333332 2
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004149 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
.......|||+|+.|+.....+ ....|.+||....+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3455789999999999877543 1245888988743332111100 1246789
Q ss_pred ccCCCEEEEEee
Q 004149 397 LSDGCTMLLSSI 408 (771)
Q Consensus 397 s~dg~~l~~~~~ 408 (771)
||||++|+.++.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998887664
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=102.70 Aligned_cols=248 Identities=12% Similarity=0.064 Sum_probs=155.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+++....|.|.-. |+.+..-+ +.-++|.++ ......+.+.+..- ++....|+|+|+..+|.+.
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d-~~lrifqvDGk~N~~lqS~~l~~f---------Pi~~a~f~p~G~~~i~~s~----- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKF---------PIQKAEFAPNGHSVIFTSG----- 277 (514)
T ss_pred CCceEEEecCCCc-eEEEecCC-CcEEEEEecCccChhheeeeeccC---------ccceeeecCCCceEEEecc-----
Confidence 4588999999655 44555443 666777777 33332333333221 2358899999996666543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC--CCccceEEEecCCCCCc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~--~~~~~~~~wspDg~~~~ 255 (771)
.+.-+|.||+.+.++.++...-+ .-....+..|||++.
T Consensus 278 --------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 278 --------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred --------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 23689999999999988841111 235678889999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|++.+ +.++|+++.. .+++...--.-.+.+....||.||+.|+...
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 99987 4558998886 5555433334467789999999998765443
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
. ..++|+||+...... ..+.. +++. .-.++|.|.+|. ++.+.+..|-.+|
T Consensus 364 -~----------~GeV~v~nl~~~~~~----------~rf~D--~G~v------~gts~~~S~ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 364 -G----------TGEVYVWNLRQNSCL----------HRFVD--DGSV------HGTSLCISLNGS-YLATGSDSGIVNI 413 (514)
T ss_pred -C----------CceEEEEecCCcceE----------EEEee--cCcc------ceeeeeecCCCc-eEEeccCcceEEE
Confidence 2 247999999875321 11111 1111 124678899998 4456667778888
Q ss_pred EEEE--CCCCcEEEecCCC---CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 416 ISVN--VSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 416 ~~~d--~~tg~~~~l~~~~---~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|-.+ ..+++.+++..-. ..+....|++|+..|+.+++.... .+.++.+++.
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kn--alrLVHvPS~ 469 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKN--ALRLVHVPSC 469 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcccc--ceEEEeccce
Confidence 8654 2344555554322 245567899988766655543333 3455555544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-07 Score=94.67 Aligned_cols=125 Identities=16% Similarity=0.145 Sum_probs=74.1
Q ss_pred cceeecC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCcccccCCCCCCcc
Q 004149 320 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 320 ~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~~ 396 (771)
..|.+++ ||+ .+|.+.+. .|+.+|+.+.+..... ...++... .++--|| +...+++
T Consensus 197 ~rP~~~~~dg~-~~~vs~eG-----------~V~~id~~~~~~~~~~-----~~~~~~~~~~~~~wrP~----g~q~ia~ 255 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYTG-----------KIFQIDLSSGDAKFLP-----AIEAFTEAEKADGWRPG----GWQQVAY 255 (352)
T ss_pred cCCceEcCCCc-EEEEecCC-----------eEEEEecCCCcceecc-----eeeeccccccccccCCC----cceeEEE
Confidence 5567788 665 56777663 5999998765542211 11111111 1122232 2234889
Q ss_pred ccCCCEEEEEeee-------CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCC-EEEEEEeCCCCCCeEEEEEeccc
Q 004149 397 LSDGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 397 s~dg~~l~~~~~~-------~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~-~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
++||+++|+.... .+..+++.+|..++++..-...........+++|++ .|+.+.... ..|.++|..++
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s---~~VsViD~~t~ 332 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD---KTLYIFDAETG 332 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC---CcEEEEECcCC
Confidence 9999999885532 223589999999998765443333345578999999 555444332 23777776544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.5e-10 Score=123.29 Aligned_cols=128 Identities=25% Similarity=0.289 Sum_probs=91.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-C-cEEEEECCC-CCCCCChhhhhcCCCCccccch
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-G-YSLLIVNYR-GSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G-~~V~~~d~r-G~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+...+|.|......++.|+||++|||++........ ....|+.. + ++|+.++|| |..|+........+++ ...
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n---~g~ 154 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN---YGL 154 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcc---hhH
Confidence 444688887543457889999999998765444332 23444443 3 999999999 6666644322222233 337
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCccc
Q 004149 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 652 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~ 652 (771)
.|+..+++|+.++ ...|+++|.|+|+|.||.++.+++.. .+.+|+++|+.++...
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 8999999999875 24799999999999999999988875 2457888998887553
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-08 Score=104.78 Aligned_cols=252 Identities=16% Similarity=0.206 Sum_probs=140.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC-Ccc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ-SQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...++||||+.||...+++ -..+|+. ... ...+....++ ..+.|+.+|+.|+..+-+++
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred cceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecCCe
Confidence 3577899999999998765544 4667732 211 2222323344 58999999999999888776
Q ss_pred CCCCCccCCCCCCCCCCccCCCCC-CcccccCCcCcccCCc--cCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWK-GQGDWEEDWGETYAGK--RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~g~~~~~~--~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.+. |+......-+....+..-. ..+...+. |+.+... ..-.||+|++++|+...+. ...+..+..++|+|+|.
T Consensus 416 VRA--wDlkRYrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 416 VRA--WDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDGS 491 (893)
T ss_pred EEe--eeecccceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEccccC
Confidence 653 2211111101100000000 00011111 3332221 3468999999999988772 33455678889999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+-.+|... |.++|+-+ ..++.+.|. ....+..++|+|||+.|+
T Consensus 492 ~----LaS~SWDkT---------------VRiW~if~---------------s~~~vEtl~-i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 492 L----LASGSWDKT---------------VRIWDIFS---------------SSGTVETLE-IRSDVLAVSFRPDGKELA 536 (893)
T ss_pred e----EEeccccce---------------EEEEEeec---------------cCceeeeEe-eccceeEEEEcCCCCeEE
Confidence 8 888887533 34444311 334444442 223467899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE------Eeccc---ccCCCCCcccccCCCCCCccccCCCEE
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV------IPVVQ---CAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~------~~~~~---~~~~~~f~g~~~~~~~~~~~s~dg~~l 403 (771)
...-+. +|-.||...+...-...+..++ .+... ..+.+. ...+++|+||+.|
T Consensus 537 VaTldg-----------qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~--------Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 537 VATLDG-----------QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT--------FTTICYSADGKCI 597 (893)
T ss_pred EEEecc-----------eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc--------eEEEEEcCCCCEE
Confidence 988763 4666765443321111111000 00000 011122 2478899999977
Q ss_pred EEEeeeCCeeEEEEEECCCCcEE
Q 004149 404 LLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+.. +....+..+++.++-+.
T Consensus 598 lAg---G~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 598 LAG---GESNSICIYDVPEGVLL 617 (893)
T ss_pred Eec---CCcccEEEEECchhhee
Confidence 643 23345777777777544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-08 Score=96.61 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=101.7
Q ss_pred ceEEEeCCCCCeEEEEecCC--C------CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 101 ASAVVPSPSGSKLLVVRNPE--N------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....|+|+|+.|++..... . +...+|.+...+.....+.+... + .+..++|||+|+++|.+..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~--~------~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE--G------PIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC--C------ceEEEEECcCCCEEEEEEc
Confidence 55678999999999977631 1 23456666533334444443221 1 1269999999999988743
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
. ....+.++|+++..+..+ . ......+.|||+|+
T Consensus 80 ~------------------------------------------~~~~v~lyd~~~~~i~~~---~-~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 80 S------------------------------------------MPAKVTLYDVKGKKIFSF---G-TQPRNTISWSPDGR 113 (194)
T ss_pred c------------------------------------------CCcccEEEcCcccEeEee---c-CCCceEEEECCCCC
Confidence 1 123677788865444444 2 23455789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+..+.. +..+.|..+|. ...+...... ........|||||++|+
T Consensus 114 ~----l~~~g~~------------n~~G~l~~wd~-----------------~~~~~i~~~~-~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 114 F----LVLAGFG------------NLNGDLEFWDV-----------------RKKKKISTFE-HSDATDVEWSPDGRYLA 159 (194)
T ss_pred E----EEEEEcc------------CCCcEEEEEEC-----------------CCCEEeeccc-cCcEEEEEEcCCCCEEE
Confidence 8 8887621 23347888887 4333222222 22367899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
....... ....+.+.+|+..+
T Consensus 160 ta~t~~r-----~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPR-----LRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccc-----eeccccEEEEEecC
Confidence 8776421 12234456666654
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.1e-09 Score=99.49 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=77.3
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
+....+||-+||.|++ ...|......|.+.|++++.+||+|. |.... + .-....-.+-...++.+.+.-.+
T Consensus 32 gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PGf---~~t~~---~-~~~~~~n~er~~~~~~ll~~l~i 102 (297)
T PF06342_consen 32 GSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPGF---GFTPG---Y-PDQQYTNEERQNFVNALLDELGI 102 (297)
T ss_pred CCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCCC---CCCCC---C-cccccChHHHHHHHHHHHHHcCC
Confidence 3456699999999987 56788888999999999999999994 33211 0 01112234555566666666556
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
+ +++.++|||.|+-.|+.++..+| ..++++++|.
T Consensus 103 ~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 103 K-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 5 78999999999999999999886 4577777764
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=99.95 Aligned_cols=224 Identities=17% Similarity=0.141 Sum_probs=132.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 611 (771)
.-.+.|.++++||-.++ ...|......|+ ..|..|+++|.|. +|.+..... ..+....+|+...++......
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~~ 120 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITV--HNYEAMAEDVKLFIDGVGGST 120 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCccccc--cCHHHHHHHHHHHHHHccccc
Confidence 44578999999996655 356777777664 5678999999998 444432111 123344677777777665432
Q ss_pred CCCCCeEEEEEcChhH-HHHHHHHHhCCCceeEEEe--cCCc-cch--------hhhhcCCCC-----Ccch-----hhh
Q 004149 612 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAA--RNPL-CNL--------ALMVGTTDI-----PDWC-----YVE 669 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG-~~a~~~a~~~p~~~~a~v~--~~p~-~~~--------~~~~~~~~~-----~~~~-----~~~ 669 (771)
-..++.++|||||| .++++.+...|+.+..+++ .+|. +.. .......+. +... +.+
T Consensus 121 --~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~ 198 (315)
T KOG2382|consen 121 --RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIE 198 (315)
T ss_pred --ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 24578999999999 7777777788887755554 2331 110 000000000 0000 000
Q ss_pred h-------------cc--CCCCCcCCCCCC---hhhHHHHhhcCccccc--cCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004149 670 S-------------YG--SKGKDSFTESPS---VEDLTRFHSKSPISHI--SKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 670 ~-------------~~--~~~~~~~~~~~~---~~~~~~~~~~sp~~~~--~~i~~P~Lii~G~~D~~vp~~~~~~~~~~ 729 (771)
. +. .....+....+. .+....+...+.-..+ .....|+|+++|.++..++.++-.++.+.
T Consensus 199 ~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~ 278 (315)
T KOG2382|consen 199 VGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKI 278 (315)
T ss_pred HhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHh
Confidence 0 00 000000000000 0111121122222222 45568999999999999998876666666
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+.. +++..++++||+... +...++.+.|.+|+.++.
T Consensus 279 fp~----~e~~~ld~aGHwVh~-E~P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 279 FPN----VEVHELDEAGHWVHL-EKPEEFIESISEFLEEPE 314 (315)
T ss_pred ccc----hheeecccCCceeec-CCHHHHHHHHHHHhcccC
Confidence 655 899999999999874 445689999999987653
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-08 Score=109.98 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=112.3
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
...++.||||+++||+....... .....+||+++. ++..+.+
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~------------------------------------~d~~s~Lwv~~~-gg~~~~l- 393 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGA------------------------------------PDPASSLWVGPL-GGVAVQV- 393 (591)
T ss_pred cccceECCCCCEEEEEEeecCCC------------------------------------CCcceEEEEEeC-CCcceee-
Confidence 36899999999999987532110 113479999997 4445677
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.+. ....+.|||||+. |+|+++.. ++.+........+||.+++ ++++.++ .
T Consensus 394 -t~g~-~~t~PsWspDG~~----lw~v~dg~---~~~~v~~~~~~gql~~~~v-----------------d~ge~~~--~ 445 (591)
T PRK13616 394 -LEGH-SLTRPSWSLDADA----VWVVVDGN---TVVRVIRDPATGQLARTPV-----------------DASAVAS--R 445 (591)
T ss_pred -ecCC-CCCCceECCCCCc----eEEEecCc---ceEEEeccCCCceEEEEec-----------------cCchhhh--c
Confidence 4444 3789999999999 99987421 1222222224468999988 6676655 3
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCcccccccee---eecCCCCCCCCccceeeEEecccccCCCCCcccccCCC
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 391 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~ 391 (771)
..+.+.+++|||||++|+|+... +|++ ..-..|. ..++.-. .+.. . .....
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~~g------------~v~Va~Vvr~~~G~-~~l~~~~-~l~~--------~----l~~~~ 499 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMIIGG------------KVYLAVVEQTEDGQ-YALTNPR-EVGP--------G----LGDTA 499 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEECC------------EEEEEEEEeCCCCc-eeecccE-Eeec--------c----cCCcc
Confidence 34568999999999999999831 4666 3333333 3332111 1110 0 00113
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 392 ~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.++.|..|++ |++.. ......+|.+++++...+.
T Consensus 500 ~~l~W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 500 VSLDWRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred ccceEecCCE-EEEEe-cCCCCceEEEecCCccccc
Confidence 4678999998 55443 3455668999997555443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.7e-08 Score=98.10 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=147.2
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..+++|+.+++... .+.+.++++.... ....+... ........|+|+++.+++....+ .+
T Consensus 16 ~~~~~~~~l~~~~~---------~g~i~i~~~~~~~-~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~~-----~i 75 (289)
T cd00200 16 AFSPDGKLLATGSG---------DGTIKVWDLETGE-LLRTLKGH-----TGPVRDVAASADGTYLASGSSDK-----TI 75 (289)
T ss_pred EEcCCCCEEEEeec---------CcEEEEEEeeCCC-cEEEEecC-----CcceeEEEECCCCCEEEEEcCCC-----eE
Confidence 34568888777542 3466666664332 11222211 13456889999998888765432 33
Q ss_pred EEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 128 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 128 ~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
.+| ..++.......... .+.++.|+|+++.|+........ ..|+............+........|.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 76 RLWDLETGECVRTLTGHTS---------YVSSVAFSPDGRILSSSSRDKTI--KVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEcCcccceEEEeccCC---------cEEEEEEcCCCCEEEEecCCCeE--EEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 344 22222222221111 12689999998766555423221 122221111111111222233455667
Q ss_pred CCcCcccCCcc-CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 206 EDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~~~~~~~-~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
++ +..+.... ...|++||+.+++..... ......+..+.|+|+++. |++.+. ...|.+
T Consensus 145 ~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~i 203 (289)
T cd00200 145 PD-GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIKL 203 (289)
T ss_pred Cc-CCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEEE
Confidence 76 33333333 789999999876654441 233346788999999987 877762 336888
Q ss_pred EecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 285 VRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+|+ ..++. ..+......+....|+|++..++..+.+ ..|+++++.+++...
T Consensus 204 ~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~~ 255 (289)
T cd00200 204 WDL-----------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECVQ 255 (289)
T ss_pred EEC-----------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeEE
Confidence 887 43433 3333455578889999997765544422 358888887644321
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
.... ....+..+.|+++++.| ++...++...+|
T Consensus 256 ~~~~-------------------~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw 288 (289)
T cd00200 256 TLSG-------------------HTNSVTSLAWSPDGKRL-ASGSADGTIRIW 288 (289)
T ss_pred Eccc-------------------cCCcEEEEEECCCCCEE-EEecCCCeEEec
Confidence 1110 00124567899998755 444455555554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.3e-08 Score=97.59 Aligned_cols=280 Identities=13% Similarity=0.094 Sum_probs=150.7
Q ss_pred hhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecC
Q 004149 64 NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP 142 (771)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 142 (771)
-+.++...+.+..||...=....+- -..-.|++...+...+|||.|.+|+.++. +.|.-+++ ++-+.......+
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg----~aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCETHQINSLQYSVTGDQILVVSG----SAQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred eeeeccccceEEEEecccccccchh-hhccCcccccccceeeecCCCCeEEEEec----CcceeEEccCCceeeeeeccc
Confidence 3455667788888887543332211 11224556677899999999999998864 33555555 332222222111
Q ss_pred CcccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCce
Q 004149 143 QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 219 (771)
Q Consensus 143 ~~~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~ 219 (771)
.-+..-..+-| .+.+-+|.|+.+-.+..+. ....
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s-------------------------------------------~Dgt 292 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS-------------------------------------------YDGT 292 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCcccceEEec-------------------------------------------CCCc
Confidence 11100000000 2246779999877655432 2256
Q ss_pred EEEEEccCCc--eeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 220 LFVININSGE--VQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 220 l~v~d~~~~~--~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
|.+||+..-+ .+.+. .-.....+..-+|+|||+. |+.. |.+...++|...-
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAag-------------c~DGSIQ~W~~~~------- 348 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAG-------------CLDGSIQIWDKGS------- 348 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhc-------------ccCCceeeeecCC-------
Confidence 6677765432 22221 0112335667899999998 7654 4444334443210
Q ss_pred hhhhhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCcccee
Q 004149 295 SELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIV 369 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~ 369 (771)
-+..+ +.-......+.+.+||+||++|+-.+.++ .|.+||+..-+. ...-.+.
T Consensus 349 ----------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-----------tLKvWDLrq~kkpL~~~tgL- 406 (641)
T KOG0772|consen 349 ----------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-----------TLKVWDLRQFKKPLNVRTGL- 406 (641)
T ss_pred ----------cccccceEeeeccCCCCceeEEEeccccchhhhccCCC-----------ceeeeeccccccchhhhcCC-
Confidence 11111 11112233588999999999998766654 488888864322 1111111
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee---CCeeEEEEEECCCCc-EEEecCCCCCceeeEEeecCC
Q 004149 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW---GSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGD 445 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~d~~ 445 (771)
...|+ -...+||||.+.|+--++. .....|+.+|..+-+ +.+|......+....|-|.=+
T Consensus 407 ----------~t~~~------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 407 ----------PTPFP------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred ----------CccCC------CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 12233 2578899999855433321 223468888876644 334444444455567777766
Q ss_pred EEEEEEeC
Q 004149 446 NIIAVSSS 453 (771)
Q Consensus 446 ~l~~~~s~ 453 (771)
+|++.+.+
T Consensus 471 Qi~~gsgd 478 (641)
T KOG0772|consen 471 QIFAGSGD 478 (641)
T ss_pred heeeecCC
Confidence 66655544
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=107.40 Aligned_cols=211 Identities=15% Similarity=0.172 Sum_probs=122.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc-
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~- 596 (771)
++.+.|.|... ...+.| ||+++..-...+ -..-..++++|.++||.|+++|.+..+.. ...++-.+
T Consensus 201 ~eLiqY~P~te-~v~~~P-LLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~--------~r~~~ldDY 270 (560)
T TIGR01839 201 LELIQYKPITE-QQHARP-LLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKA--------HREWGLSTY 270 (560)
T ss_pred eEEEEeCCCCC-CcCCCc-EEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChh--------hcCCCHHHH
Confidence 56677777531 122344 666666332211 11224578999999999999999873321 11222112
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH----HHHhCCC-ceeEEEecCCccchhhh---------------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNLALM--------------- 656 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~----~a~~~p~-~~~a~v~~~p~~~~~~~--------------- 656 (771)
++.+.++++.+.+. ...++|.++|+|+||.+++. +++++++ +++.+++....+|...-
T Consensus 271 v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~ 348 (560)
T TIGR01839 271 VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAA 348 (560)
T ss_pred HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHH
Confidence 34666777777765 35678999999999999997 6777885 79998877776654210
Q ss_pred ----hcCCCCCcchhhhhccC---------CCCCcC-C-CCCC-------------------hhhHHHHhhcCcc-----
Q 004149 657 ----VGTTDIPDWCYVESYGS---------KGKDSF-T-ESPS-------------------VEDLTRFHSKSPI----- 697 (771)
Q Consensus 657 ----~~~~~~~~~~~~~~~~~---------~~~~~~-~-~~~~-------------------~~~~~~~~~~sp~----- 697 (771)
.....++.+.+...|.. .....+ . ..+. .+... ++..+.+
T Consensus 349 e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~-ly~~N~L~~pG~ 427 (560)
T TIGR01839 349 KRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLD-MFKSNPLTRPDA 427 (560)
T ss_pred HHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHH-HHhcCCCCCCCC
Confidence 00000110000000000 000000 0 0000 11111 2222222
Q ss_pred -------ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 698 -------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 698 -------~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
-.+.+|++|+|++.|+.|-++|++.+..+.+.+. .+++++..+ +||.
T Consensus 428 l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~g---s~~~fvl~~-gGHI 481 (560)
T TIGR01839 428 LEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLG---GKRRFVLSN-SGHI 481 (560)
T ss_pred EEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcC---CCeEEEecC-CCcc
Confidence 1367899999999999999999999988877663 358888875 5884
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-07 Score=86.35 Aligned_cols=227 Identities=16% Similarity=0.240 Sum_probs=132.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||.|++||..+... ...+| +. ++..-+..+. +.. .+..+++||++|.+||.-+++
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-----t~~Iw~k~~~efecv~~lE-GHE------nEVK~Vaws~sG~~LATCSRD--- 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-----TVVIWKKEDGEFECVATLE-GHE------NEVKCVAWSASGNYLATCSRD--- 126 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-----eEEEeecCCCceeEEeeee-ccc------cceeEEEEcCCCCEEEEeeCC---
Confidence 4588999999999999887754 56667 32 2323222221 111 122699999999999986543
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce----eeccCCCCCCccceEEEecCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~----~~l~~~~~~~~~~~~~wspDg~ 252 (771)
..+|+|.++.+.. -.| .+..-.+..+.|.|.-.
T Consensus 127 -----------------------------------------KSVWiWe~deddEfec~aVL--~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 127 -----------------------------------------KSVWIWEIDEDDEFECIAVL--QEHTQDVKHVIWHPTED 163 (312)
T ss_pred -----------------------------------------CeEEEEEecCCCcEEEEeee--ccccccccEEEEcCCcc
Confidence 4788888775432 223 34445678899999765
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCCccccceeecCCCCEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
|+|+.. +.....+|.-+.+ +. .-...|..+...+.+..|+|.|.+|
T Consensus 164 -----lL~S~S------------YDnTIk~~~~~~d----------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 164 -----LLFSCS------------YDNTIKVYRDEDD----------------DDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred -----eeEEec------------cCCeEEEEeecCC----------------CCeeEEEEecCccceEEEEEecCCCceE
Confidence 666541 2232344444321 11 1245666677789999999999999
Q ss_pred EEEecCCCCCC-----C-CccccccceeeecCCCCCCCCccceeeEEecccccCC---CCC------cccccCCCCCCcc
Q 004149 332 VFLSAKSSVDS-----G-AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---DCF------PGLYSSSILSNPW 396 (771)
Q Consensus 332 ~f~~~~~~~~~-----g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~f------~g~~~~~~~~~~~ 396 (771)
+-.+.+..+.. + ++.....||.+.|.++ . ..+.+.+..+.+++.... ..+ .+.+...+.++.|
T Consensus 211 ~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~-~-IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNG-V-IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred EEecCCcceEeeeeccCcchhcccceEeeeeccc-c-eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 98888754311 0 0111234554555411 1 112222333333333221 111 1123345678889
Q ss_pred ccCCCEEEEEeeeCCeeEEEEE
Q 004149 397 LSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 397 s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|..+-++++...+|..++|.+
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cCCCCCceeecCCCceEEEEEe
Confidence 9976667777777788888765
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-09 Score=110.23 Aligned_cols=134 Identities=22% Similarity=0.226 Sum_probs=91.1
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCC-cEEEEECCCC-CCCCCh-hhhhcCC
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYRG-SLGFGE-EALQSLP 589 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~V~~~d~rG-~~~~g~-~~~~~~~ 589 (771)
.+.|.+.| .++.|. .+.++.|+|||+|||.+..... .....-..|+++| ++|+.+|||- .-||=. +......
T Consensus 75 ~sEDCL~L--NIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~ 150 (491)
T COG2272 75 GSEDCLYL--NIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTED 150 (491)
T ss_pred ccccceeE--EeeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccc
Confidence 34455444 477787 3567799999999988765432 2223456788888 9999999993 323211 1001001
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCccc
Q 004149 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 652 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~ 652 (771)
......-+.|++.+++|+.++ ..-|+++|.|+|+|.||+.++.+++. | .+|+.+|+.||.+.
T Consensus 151 ~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 151 AFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 111113478999999999886 34699999999999999999988764 4 36777788887654
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-08 Score=90.78 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=117.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCC-----CCC-CChhhhhcCC-CCccccchhh---HHHHHHH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG-----SLG-FGEEALQSLP-GKVGSQDVND---VLTAIDH 606 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG-----~~~-~g~~~~~~~~-~~~~~~~~~D---~~~~i~~ 606 (771)
..+||++||-+.+ ...+...+.-+.-....-++|.-+- .++ .+..|..... ...+..+.+. ....+..
T Consensus 3 ~atIi~LHglGDs--g~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDS--GSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCC--CccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 3579999996554 3344444444444555566664211 111 1122221110 0001112222 2233444
Q ss_pred HHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCC
Q 004149 607 VIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 607 l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
|.++ ..++.+||++-|.|+||.++++.+..++..+.+.+..+++...... ..+.| +
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~----~~~~~-----------------~ 139 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASI----GLPGW-----------------L 139 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchh----hccCC-----------------c
Confidence 4432 3378899999999999999999999887666666665554321000 00000 0
Q ss_pred ChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004149 684 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 684 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
+. .+ .+|++..||+.|++||..-..+..+.|+..+..+++..|++.+|... .+-+..+.
T Consensus 140 ------------~~--~~--~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~ 198 (206)
T KOG2112|consen 140 ------------PG--VN--YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLK 198 (206)
T ss_pred ------------cc--cC--cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHH
Confidence 00 00 57999999999999999999999999999999999999999999875 35678888
Q ss_pred HHHHHH
Q 004149 764 LWFKKY 769 (771)
Q Consensus 764 ~wl~~~ 769 (771)
.|++..
T Consensus 199 ~~~~~l 204 (206)
T KOG2112|consen 199 SWIKTL 204 (206)
T ss_pred HHHHHh
Confidence 888763
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-08 Score=95.83 Aligned_cols=209 Identities=13% Similarity=0.039 Sum_probs=122.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+....+|.|+++.+..++|++++.||--+.... ......+.|...| ..++.+|+--... -.+... .. ..
T Consensus 81 ~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g-~i~~~~dsli~~g~i~pai~vgid~~d~~~----R~~~~~-~n-~~ 153 (299)
T COG2382 81 ERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSG-RIPRILDSLIAAGEIPPAILVGIDYIDVKK----RREELH-CN-EA 153 (299)
T ss_pred ceeEEEEeCCCCCccccccEEEEeccHHHHhcC-ChHHHHHHHHHcCCCCCceEEecCCCCHHH----HHHHhc-cc-HH
Confidence 355678889999889999999999994332211 2233455555544 6788888643111 011111 10 00
Q ss_pred chhhHH-HHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004149 596 DVNDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 596 ~~~D~~-~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
....+. +.+-++.+... -+.++-+|+|.|+||.++++++.+||+.|..++..||.++.......
T Consensus 154 ~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~------------- 220 (299)
T COG2382 154 YWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ------------- 220 (299)
T ss_pred HHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc-------------
Confidence 112221 33345544432 35667899999999999999999999999999999998653211000
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
+..+..+.. +-......-..-++...++.+.+. ...+++++.|+..|.+..+..|+| ||...
T Consensus 221 ----------~~~~~~~~l---~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gHdw~-- 282 (299)
T COG2382 221 ----------PQGEVAESL---KILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GHDWA-- 282 (299)
T ss_pred ----------cccchhhhh---hhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CCchh--
Confidence 000110101 111111111222333344444455 456789999999999999999998 99653
Q ss_pred CChHHHHHHHHHHHHHHh
Q 004149 753 QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~~l 770 (771)
.+-..+.++|...+
T Consensus 283 ----~Wr~~l~~~L~~l~ 296 (299)
T COG2382 283 ----WWRPALAEGLQLLL 296 (299)
T ss_pred ----HhHHHHHHHHHHhh
Confidence 34445555655443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-07 Score=85.29 Aligned_cols=228 Identities=14% Similarity=0.192 Sum_probs=130.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+-...|+|-..-+.++...+ . ...+| ..++....+....+. -.+.|||||+++++...
T Consensus 66 svdql~w~~~~~d~~atas~d-k---~ir~wd~r~~k~~~~i~~~~en----------i~i~wsp~g~~~~~~~k----- 126 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGD-K---TIRIWDIRSGKCTARIETKGEN----------INITWSPDGEYIAVGNK----- 126 (313)
T ss_pred chhhheeCCCCCcceEEecCC-c---eEEEEEeccCcEEEEeeccCcc----------eEEEEcCCCCEEEEecC-----
Confidence 355677877655554443322 2 34444 234444444432222 27899999999999643
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
...|-.+|..+-++..- -+-.......+|+-++.
T Consensus 127 ---------------------------------------dD~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd----- 160 (313)
T KOG1407|consen 127 ---------------------------------------DDRITFIDARTYKIVNE--EQFKFEVNEISWNNSND----- 160 (313)
T ss_pred ---------------------------------------cccEEEEEecccceeeh--hcccceeeeeeecCCCC-----
Confidence 35667777766554443 23334566778996555
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+.|..+ +.+.|-++..+ .-.....|..+...+....|+|||+++|..+.+
T Consensus 161 ~Fflt~--------------GlG~v~ILsyp----------------sLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 161 LFFLTN--------------GLGCVEILSYP----------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred EEEEec--------------CCceEEEEecc----------------ccccccccccCCcceEEEEECCCCceEeecccc
Confidence 777662 33345555442 223345566677778889999999999887765
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .+-+||++ +...+ ..|+. ....+..++||-||++| .+.+.+.-..|.
T Consensus 211 A-----------lvSLWD~~--ELiC~----------------R~isR-ldwpVRTlSFS~dg~~l-ASaSEDh~IDIA- 258 (313)
T KOG1407|consen 211 A-----------LVSLWDVD--ELICE----------------RCISR-LDWPVRTLSFSHDGRML-ASASEDHFIDIA- 258 (313)
T ss_pred c-----------eeeccChh--Hhhhh----------------eeecc-ccCceEEEEeccCccee-eccCccceEEeE-
Confidence 3 23445543 22111 01110 01135678899999966 455445444454
Q ss_pred EECCCCc-EEEecCCCCCceeeEEeecCCEEEEEEeCCCC
Q 004149 418 VNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 418 ~d~~tg~-~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~ 456 (771)
+..||. +.++.-... ....+|-|....|+|+++..+.
T Consensus 259 -~vetGd~~~eI~~~~~-t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 259 -EVETGDRVWEIPCEGP-TFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred -ecccCCeEEEeeccCC-ceeEEecCCCceeeEEecCCCC
Confidence 445664 445544333 3446778877777777766554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6e-07 Score=86.76 Aligned_cols=254 Identities=13% Similarity=0.087 Sum_probs=135.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+....||+||..++..++.+ .-++|.. ..+...+.+... -++ ....|......+.+.+......
T Consensus 15 ~~i~sl~fs~~G~~litss~dD--sl~LYd~-~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDD--SLRLYDS-LSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred CceeEEEecCCCCEEEEecCCC--eEEEEEc-CCCceeeEeecccccc----------cEEEEecCCceEEEccCCCCCc
Confidence 4578899999999998754432 2333332 344444444432 234 3667777777777776633222
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-.+.+..+.+-.+-...+..-.....-+|-...-+.+..+..|.+||+...+.+-+. ... ...-+++.|.|
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~~-~~pi~AfDp~G------ 152 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NLS-GRPIAAFDPEG------ 152 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ecC-CCcceeECCCC------
Confidence 122222222222222223332333333333222334445679999999877665552 211 22346889988
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecC-CCCccccceeecCCCCEEEEE
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+|+.-. ....|.++|+-.. +.|.- -.+. ..........||||||.|...
T Consensus 153 LifA~~~-------------~~~~IkLyD~Rs~--------------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 153 LIFALAN-------------GSELIKLYDLRSF--------------DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred cEEEEec-------------CCCeEEEEEeccc--------------CCCCceeEccCCCCccceeeeEEcCCCCEEEEE
Confidence 5555421 1114556665210 22322 2233 223346778999999999877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
.+. ..++++|.-+|..+.--... +....+| ...+|+|||+.| +..+.++...
T Consensus 206 T~~-----------s~~~~lDAf~G~~~~tfs~~---------~~~~~~~-------~~a~ftPds~Fv-l~gs~dg~i~ 257 (311)
T KOG1446|consen 206 TNA-----------SFIYLLDAFDGTVKSTFSGY---------PNAGNLP-------LSATFTPDSKFV-LSGSDDGTIH 257 (311)
T ss_pred eCC-----------CcEEEEEccCCcEeeeEeec---------cCCCCcc-------eeEEECCCCcEE-EEecCCCcEE
Confidence 654 35888887766632211100 0011111 367899999955 5555566655
Q ss_pred EEEEECCCCcEEEecCC
Q 004149 415 IISVNVSSGELLRITPA 431 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~ 431 (771)
+| ++++|+..-.+.+
T Consensus 258 vw--~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 258 VW--NLETGKKVAVLRG 272 (311)
T ss_pred EE--EcCCCcEeeEecC
Confidence 55 5678876655544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.5e-08 Score=104.72 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=149.4
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC---CcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ---SQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
...+....|||||+.++-.+.+. .+.+|+- +...+.+.. ...+ .++.|+|+|+.|+..+.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~-----tiriwd~~~~~~~~~~l~gH~~~v----------~~~~f~p~g~~i~Sgs~D 267 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDK-----TLRIWDLKDDGRNLKTLKGHSTYV----------TSVAFSPDGNLLVSGSDD 267 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCc-----eEEEeeccCCCeEEEEecCCCCce----------EEEEecCCCCEEEEecCC
Confidence 35688999999999887655443 4555532 222233321 2222 699999999888888777
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCC-ccceEEEec
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSL-SVGQVVWAP 249 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~-~~~~~~wsp 249 (771)
...+ .|+.........+..+........|.+|....+++..+..|.+||+.++.. ..+.+ .... .+..+.|||
T Consensus 268 ~tvr--iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 268 GTVR--IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSP 344 (456)
T ss_pred CcEE--EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECC
Confidence 7654 566554555556666666666778999988888887889999999999983 23311 1111 468899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC---ccccceeec
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI---SSAFFPRFS 325 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~---~~~~~p~~S 325 (771)
+|+. |+... .+..|-++|+ ..+. ....+... ....++..+
T Consensus 345 ~~~~----ll~~~---------------~d~~~~~w~l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 345 NGKY----LLSAS---------------LDRTLKLWDL-----------------RSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CCcE----EEEec---------------CCCeEEEEEc-----------------cCCcceeeecccCCcceeEeccccc
Confidence 9997 66654 2225666666 3232 23333222 245677779
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
++|+.|+-.+.+ ..|++||..++...+...+.. ...+....|++....+..
T Consensus 389 ~~~~~i~sg~~d-----------~~v~~~~~~s~~~~~~l~~h~------------------~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 389 TGGKLIYSGSED-----------GSVYVWDSSSGGILQRLEGHS------------------KAAVSDLSSHPTENLIAS 439 (456)
T ss_pred CCCCeEEEEeCC-----------ceEEEEeCCccchhhhhcCCC------------------CCceeccccCCCcCeeee
Confidence 999988766655 358999988766544322220 012356678888875544
Q ss_pred Eee-eCCeeEEEEE
Q 004149 406 SSI-WGSSQVIISV 418 (771)
Q Consensus 406 ~~~-~~~~~~l~~~ 418 (771)
.+. .+....+|..
T Consensus 440 ~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKY 453 (456)
T ss_pred cCcCCCceEEEecC
Confidence 332 2344455544
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.1e-08 Score=99.18 Aligned_cols=221 Identities=16% Similarity=0.215 Sum_probs=125.3
Q ss_pred EEEEe-cCCCCCCCCCcEEEEEcCCCCCCCCCcch--H--HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 523 AIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLSSYS--K--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 523 ~~~~~-P~~~~~~~~~p~vv~~HGg~~~~~~~~~~--~--~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.|++. |....+ +..|+||++|||++........ . .+..+.. ..++++.||.....- ..+...+..+
T Consensus 108 ~Wlvk~P~~~~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~-------~~~~~yPtQL 178 (374)
T PF10340_consen 108 YWLVKAPNRFKP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSD-------EHGHKYPTQL 178 (374)
T ss_pred EEEEeCCcccCC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccc-------cCCCcCchHH
Confidence 57776 654322 3459999999998764332111 1 1112223 569999999865300 0123445568
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-----CCceeEEEecCCccchhhhhcCC-------CCCcc
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTT-------DIPDW 665 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~~~~~~~~~~-------~~~~~ 665 (771)
.++.+.+++|.+.. ..++|.|+|-|+||.+++.++... ....+.+|+++|.+++....... ...+.
T Consensus 179 ~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~~~D~ 256 (374)
T PF10340_consen 179 RQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNEKRDM 256 (374)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccccccc
Confidence 89999999999542 357899999999999999876531 12358999999999876211100 00000
Q ss_pred h---hhhhccCCCCCcCCCCCChhhHHHHhhcCccc---------cccC--CCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 666 C---YVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---------HISK--VKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 666 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---------~~~~--i~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
. ....++. .+.+... .+......|.. .... -+.-++++.|+++-+. .+..++.+.+.
T Consensus 257 l~~~~~~~~~~----~y~~~~~---~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evfr--ddI~~~~~~~~ 327 (374)
T PF10340_consen 257 LSYKGLSMFGD----AYIGNND---PENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVFR--DDILEWAKKLN 327 (374)
T ss_pred cchhhHHHHHH----hhccccc---cccccccCCccCcccCCChhHHHHhccCCcEEEEECCccccH--HHHHHHHHHHh
Confidence 0 0000100 0111000 00000000100 0011 1357999999999777 78889999998
Q ss_pred hCCC-----CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 732 EKGV-----ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 732 ~~g~-----~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+. ..++.+-+++.|.-. -......+..|.+
T Consensus 328 ~~~~~~~~~~~nv~~~~~G~Hi~P----~~~~~~~~~~W~~ 364 (374)
T PF10340_consen 328 DVKPNKFSNSNNVYIDEGGIHIGP----ILNYSRDLDKWSK 364 (374)
T ss_pred hcCccccCCcceEEEecCCccccc----hhhhhcCHHHHhc
Confidence 6543 367788888888542 2233445555543
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.9e-07 Score=84.87 Aligned_cols=253 Identities=14% Similarity=0.111 Sum_probs=151.1
Q ss_pred eEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCC--CCccCCCCCC
Q 004149 125 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS--SDKDCNSWKG 200 (771)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 200 (771)
+.+.+| ..|...+.++.+.. ....+..+||++.||-.+.... ..++.......+ ....+..-..
T Consensus 20 hTIRfWqa~tG~C~rTiqh~ds---------qVNrLeiTpdk~~LAaa~~qhv---RlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDS---------QVNRLEITPDKKDLAAAGNQHV---RLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceeeeeehhcCeEEEEEecCcc---------ceeeEEEcCCcchhhhccCCee---EEEEccCCCCCceeEEeccCCceE
Confidence 466777 45665666654322 2368999999999988664331 122222121111 1111212223
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
.+.|..|+.--+++..+..+.+||+..-...++ ......+..+...|+... |+... ...
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte----Lis~d---------------qsg 146 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE----LISGD---------------QSG 146 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcce----EEeec---------------CCC
Confidence 455666766677777889999999988777776 455567888999998765 55432 445
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCC--cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+|+++|+ ... ....+.+....+.+....|||++|+-.-+.. ..|+|++-+
T Consensus 147 ~irvWDl-----------------~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG-----------~cyvW~l~~ 198 (311)
T KOG0315|consen 147 NIRVWDL-----------------GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG-----------NCYVWRLLN 198 (311)
T ss_pred cEEEEEc-----------------cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc-----------cEEEEEccC
Confidence 8999998 333 2333444555689999999999988666552 488888866
Q ss_pred CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec-CCCCCcee
Q 004149 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT-PAESNFSW 437 (771)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-~~~~~~~~ 437 (771)
+.... .+.++.+ |+ .....+-...+|||+|+|+ +.+.+....||..+-. =+++..+ ......-.
T Consensus 199 ~~~~s------~l~P~~k------~~-ah~~~il~C~lSPd~k~la-t~ssdktv~iwn~~~~-~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 199 HQTAS------ELEPVHK------FQ-AHNGHILRCLLSPDVKYLA-TCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWD 263 (311)
T ss_pred CCccc------cceEhhh------ee-cccceEEEEEECCCCcEEE-eecCCceEEEEecCCc-eeeEEEeecCCceEEe
Confidence 43311 1222221 11 1112234566899999775 4444556666655432 1333333 33333444
Q ss_pred eEEeecCCEEEEEEeC
Q 004149 438 SLLTLDGDNIIAVSSS 453 (771)
Q Consensus 438 ~~~s~d~~~l~~~~s~ 453 (771)
..||.||.+|+...+.
T Consensus 264 c~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSD 279 (311)
T ss_pred eeeccCccEEEecCCC
Confidence 6899999988766554
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.5e-08 Score=90.38 Aligned_cols=162 Identities=9% Similarity=0.105 Sum_probs=107.6
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCccccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGS 148 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 148 (771)
.++.+++||+.++ ...+|+.... ..+...++|||.++|+--+.+. .+.+|+ -+... .+-......
T Consensus 83 wD~~lrlWDl~~g-~~t~~f~GH~-----~dVlsva~s~dn~qivSGSrDk-----Tiklwnt~g~ck-~t~~~~~~~-- 148 (315)
T KOG0279|consen 83 WDGTLRLWDLATG-ESTRRFVGHT-----KDVLSVAFSTDNRQIVSGSRDK-----TIKLWNTLGVCK-YTIHEDSHR-- 148 (315)
T ss_pred ccceEEEEEecCC-cEEEEEEecC-----CceEEEEecCCCceeecCCCcc-----eeeeeeecccEE-EEEecCCCc--
Confidence 4567888888544 3344554443 6789999999999997654433 566772 23222 222111112
Q ss_pred ccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004149 149 VYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 149 ~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
+|+.++.|||. .-.|+-.+.++..+ .|+...-+.......+..+.....++||+.....+.+...+++||++
T Consensus 149 ----~WVscvrfsP~~~~p~Ivs~s~DktvK--vWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 149 ----EWVSCVRFSPNESNPIIVSASWDKTVK--VWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred ----CcEEEEEEcCCCCCcEEEEccCCceEE--EEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 35589999998 45555555666544 56554444444555567777788899998777788889999999999
Q ss_pred CCceeeccCCCCCCccceEEEecCCCC
Q 004149 227 SGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.++-..- .+....+.+.+|||.--+
T Consensus 223 ~~k~lys--l~a~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 223 EGKNLYS--LEAFDIVNSLCFSPNRYW 247 (315)
T ss_pred CCceeEe--ccCCCeEeeEEecCCcee
Confidence 8876444 455667889999998655
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.9e-07 Score=94.34 Aligned_cols=263 Identities=15% Similarity=0.106 Sum_probs=129.0
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
....+||||++++. .+++ + .+-.++ ...+..+.+...... .++++||||++|+.....
T Consensus 40 ~~~~~s~Dgr~~yv-~~rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYV-ANRD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE------- 98 (369)
T ss_dssp EEEE-TT-SSEEEE-EETT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE-------
T ss_pred eEEEecCCCCEEEE-EcCC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC-------
Confidence 44679999998754 4443 2 466666 445555555554444 489999999988665332
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC------CCCccceEEEecCCCCC
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP------KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~------~~~~~~~~~wspDg~~~ 254 (771)
.+.+.++|.++.++.....+. ....+..+.-||+...
T Consensus 99 ------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~- 141 (369)
T PF02239_consen 99 ------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE- 141 (369)
T ss_dssp ------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-
T ss_pred ------------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-
Confidence 368899998887765431011 1123345566777775
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
.++.-. ...+||.+|.. +.... ..............|+|||++++-
T Consensus 142 ---fVv~lk--------------d~~~I~vVdy~----------------d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 142 ---FVVNLK--------------DTGEIWVVDYS----------------DPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp ---EEEEET--------------TTTEEEEEETT----------------TSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred ---EEEEEc--------------cCCeEEEEEec----------------cccccceeeecccccccccccCcccceeee
Confidence 555432 23489999972 21211 111122234556799999998765
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccc---ee------eE----EecccccCCCCCc---------c------
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK---IV------DV----IPVVQCAEGDCFP---------G------ 385 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~------~~----~~~~~~~~~~~f~---------g------ 385 (771)
..+.. ..|-++|.++++...+... .. -+ -.+|.......|. .
T Consensus 189 a~~~s----------n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 189 AANGS----------NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp EEGGG----------TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred ccccc----------ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 54332 3455555554433211000 00 00 0000000000000 0
Q ss_pred ------cccC-CCCCCccccCCCEEEEEee-eCCeeEEEEEECCCCcEE-EecCCCC-CceeeEEeecCCEEEEEEeCCC
Q 004149 386 ------LYSS-SILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 386 ------~~~~-~~~~~~~s~dg~~l~~~~~-~~~~~~l~~~d~~tg~~~-~l~~~~~-~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
+-.. ..-.+.-+||+++|++... ......|..+|.++.++. .+....+ ......|++||++++++.-..+
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 0000 1123445999999988722 233567999999887654 3332222 2456789999999999887665
Q ss_pred CCCeEEEEEecc
Q 004149 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
. .|.++|..+
T Consensus 339 ~--~i~v~D~~T 348 (369)
T PF02239_consen 339 G--AIVVYDAKT 348 (369)
T ss_dssp T--EEEEEETTT
T ss_pred C--EEEEEECCC
Confidence 5 788887543
|
... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-07 Score=99.42 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=103.3
Q ss_pred ceEEEEEccCCc--------eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 218 PSLFVININSGE--------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 218 ~~l~v~d~~~~~--------~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..|.+||+.++. ...+ ......+..+.|+|++.. +++++. .+..|.++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs--------------~DgtVrIWDl-- 155 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAG--------------ADMVVNVWDV-- 155 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEe--------------CCCEEEEEEC--
Confidence 567788876542 2233 233446788999999866 655541 2336888887
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.+++ ...+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++....
T Consensus 156 ---------------~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~~v~t---- 205 (493)
T PTZ00421 156 ---------------ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGTIVSS---- 205 (493)
T ss_pred ---------------CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCcEEEE----
Confidence 4444 34555566678999999999988776654 3588999877553110
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCc--EEEecCCC-CCceeeEEeecC
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE--LLRITPAE-SNFSWSLLTLDG 444 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~l~~~d~~tg~--~~~l~~~~-~~~~~~~~s~d~ 444 (771)
+.... . .......|++++..|+..... .....+..+|+.+.. ...+.... .....+.|++++
T Consensus 206 ------l~~H~-~-------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 206 ------VEAHA-S-------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred ------EecCC-C-------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 00000 0 011245688888766543321 122345555665432 22222111 223445678888
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccc
Q 004149 445 DNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 445 ~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+.|+....+. ..|.+.++.++
T Consensus 272 ~~L~lggkgD---g~Iriwdl~~~ 292 (493)
T PTZ00421 272 NLLYIGSKGE---GNIRCFELMNE 292 (493)
T ss_pred CEEEEEEeCC---CeEEEEEeeCC
Confidence 8776654322 34666666543
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-08 Score=102.59 Aligned_cols=230 Identities=18% Similarity=0.243 Sum_probs=143.1
Q ss_pred CCCcEEEEEcCCCCCCCCC----cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--------CccccchhhHHH
Q 004149 535 SCDPLIVVLHGGPHSVSLS----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQDVNDVLT 602 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~----~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~--------~~~~~~~~D~~~ 602 (771)
+++|+|++.||--.+.... .-...+-.|+++||.|.+-|.|| ..+++.-....+. .+-+-...|+-+
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA 149 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPA 149 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHH
Confidence 7899999999954433211 11224556799999999999999 4454432211110 111223679999
Q ss_pred HHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCccchhh---------------------hhc
Q 004149 603 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLAL---------------------MVG 658 (771)
Q Consensus 603 ~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~---------------------~~~ 658 (771)
.|+++.+.- ..+++..+|||.|+.....++...|+ +++..++.+|+..+.. +.+
T Consensus 150 ~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg 227 (403)
T KOG2624|consen 150 MIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFG 227 (403)
T ss_pred HHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcC
Confidence 999998873 56899999999999999988887765 6888899999773320 000
Q ss_pred CCCC-Ccc----------hh-------------hhhccCCC-----------------------------------CCcC
Q 004149 659 TTDI-PDW----------CY-------------VESYGSKG-----------------------------------KDSF 679 (771)
Q Consensus 659 ~~~~-~~~----------~~-------------~~~~~~~~-----------------------------------~~~~ 679 (771)
.... +.. |. ....+... .+.|
T Consensus 228 ~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~y 307 (403)
T KOG2624|consen 228 RKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKY 307 (403)
T ss_pred CccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCcccc
Confidence 0000 000 00 00000000 0000
Q ss_pred CCCCChhhHHHHhh-cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc--CCCCCChH
Q 004149 680 TESPSVEDLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQSDF 756 (771)
Q Consensus 680 ~~~~~~~~~~~~~~-~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~ 756 (771)
.... ..+...|.. ..|...+.++++|+.+.+|..|.++.+++...+...+....+ ...+.+++-.|. +.......
T Consensus 308 D~G~-~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~ 385 (403)
T KOG2624|consen 308 DYGS-KRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKE 385 (403)
T ss_pred CCCc-cccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHH
Confidence 0000 012222222 234567888999999999999999999999988887776544 333347777885 33456677
Q ss_pred HHHHHHHHHHHHH
Q 004149 757 ESFLNIGLWFKKY 769 (771)
Q Consensus 757 ~~~~~i~~wl~~~ 769 (771)
+++..|++.+++.
T Consensus 386 ~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 386 EVYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHHHHHhh
Confidence 8899999988765
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.4e-08 Score=96.02 Aligned_cols=229 Identities=17% Similarity=0.158 Sum_probs=127.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcc-----hHHHHHHH-------HCCcEEEEECCCCCC-CC-ChhhhhcCC----CCcccc
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSY-----SKSLAFLS-------SVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQ 595 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~-----~~~~~~la-------~~G~~V~~~d~rG~~-~~-g~~~~~~~~----~~~~~~ 595 (771)
..+..+|+++|+-.++.-.... ..+++.|. -..|-||++|.-|+. |+ |.+..+..- ..+...
T Consensus 48 ~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ 127 (368)
T COG2021 48 AEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVI 127 (368)
T ss_pred ccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcc
Confidence 3567899999994432111110 01233333 334999999998754 22 222222110 122334
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh---------hhcCCCCCcc
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---------MVGTTDIPDW 665 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~---------~~~~~~~~~~ 665 (771)
.++|+.++-+.|++.-.| +++. ++|.||||+.++..+..+|+++..++.++....... ......-|.|
T Consensus 128 ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~ 205 (368)
T COG2021 128 TIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDW 205 (368)
T ss_pred cHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCc
Confidence 578999888888777444 4555 999999999999999999999887776665332100 0001111122
Q ss_pred h------------------------------hhhhccCCCCCcCCCC-CChhhHHH------------------------
Q 004149 666 C------------------------------YVESYGSKGKDSFTES-PSVEDLTR------------------------ 690 (771)
Q Consensus 666 ~------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~------------------------ 690 (771)
. +.+.++......-... ......+.
T Consensus 206 n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~a 285 (368)
T COG2021 206 NGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRA 285 (368)
T ss_pred cCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 0 0111111000000000 00001111
Q ss_pred HhhcCccc-------cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe-CCCCccCCCCCChHHHHHHH
Q 004149 691 FHSKSPIS-------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 691 ~~~~sp~~-------~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-~~~~H~~~~~~~~~~~~~~i 762 (771)
+...++.. -+.++++|+|++.=+.|.+.|+++.+++.+.|+..+. ++++ ...||.-...+.. .+...|
T Consensus 286 ld~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~e~~-~~~~~i 361 (368)
T COG2021 286 LDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLVESE-AVGPLI 361 (368)
T ss_pred HHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhcchh-hhhHHH
Confidence 11222222 2678999999999999999999999999999998765 4333 3457864433322 344667
Q ss_pred HHHHHH
Q 004149 763 GLWFKK 768 (771)
Q Consensus 763 ~~wl~~ 768 (771)
..||+.
T Consensus 362 ~~fL~~ 367 (368)
T COG2021 362 RKFLAL 367 (368)
T ss_pred HHHhhc
Confidence 777753
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.4e-08 Score=97.12 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=143.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|+|..++|+.. .+++++.||+.+. +..++. .+-..+........+||||++||+.... ..|+++
T Consensus 266 ~p~G~~~i~~s~--------rrky~ysyDle~a--k~~k~~-~~~g~e~~~~e~FeVShd~~fia~~G~~----G~I~lL 330 (514)
T KOG2055|consen 266 APNGHSVIFTSG--------RRKYLYSYDLETA--KVTKLK-PPYGVEEKSMERFEVSHDSNFIAIAGNN----GHIHLL 330 (514)
T ss_pred cCCCceEEEecc--------cceEEEEeecccc--cccccc-CCCCcccchhheeEecCCCCeEEEcccC----ceEEee
Confidence 348886666653 4568899988443 333321 1111122346678889999999987443 356666
Q ss_pred e-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004149 130 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 130 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
- ..++..........+ ..+.||.||+.|+...
T Consensus 331 hakT~eli~s~KieG~v----------~~~~fsSdsk~l~~~~------------------------------------- 363 (514)
T KOG2055|consen 331 HAKTKELITSFKIEGVV----------SDFTFSSDSKELLASG------------------------------------- 363 (514)
T ss_pred hhhhhhhhheeeeccEE----------eeEEEecCCcEEEEEc-------------------------------------
Confidence 6 444433333333333 7999999998877652
Q ss_pred CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 209 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
...++|+||+....+...---.+.....+++.|++|.+ ++..+.. |+. .||..+-.
T Consensus 364 -------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y----lA~GS~~------GiV-------NIYd~~s~ 419 (514)
T KOG2055|consen 364 -------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY----LATGSDS------GIV-------NIYDGNSC 419 (514)
T ss_pred -------CCceEEEEecCCcceEEEEeecCccceeeeeecCCCce----EEeccCc------ceE-------EEeccchh
Confidence 23689999998876554410233345567888999998 8877632 221 45544321
Q ss_pred cccchhhhhhhhcCCCCCCcceec---CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004149 289 LYKSEASELELKESSSEDLPVVNL---TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l---t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
. .++.++++ ..--..+.+..|+||++.|+..++.. ...|.++.+.+-...
T Consensus 420 ~---------------~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~---------knalrLVHvPS~TVF--- 472 (514)
T KOG2055|consen 420 F---------------ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK---------KNALRLVHVPSCTVF--- 472 (514)
T ss_pred h---------------ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc---------ccceEEEeccceeee---
Confidence 1 23333333 33334688999999999999888764 234555555442210
Q ss_pred cceeeEEecccccCCCCCccc--ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 366 EKIVDVIPVVQCAEGDCFPGL--YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
..||.. ....+..++|||.|.++. ..+..++..||.+.
T Consensus 473 ---------------sNfP~~n~~vg~vtc~aFSP~sG~lA-vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 ---------------SNFPTSNTKVGHVTCMAFSPNSGYLA-VGNEAGRVHLFKLH 512 (514)
T ss_pred ---------------ccCCCCCCcccceEEEEecCCCceEE-eecCCCceeeEeec
Confidence 011110 001345788999998664 45667888888764
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=101.49 Aligned_cols=119 Identities=21% Similarity=0.295 Sum_probs=85.4
Q ss_pred CceEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-
Q 004149 518 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~---~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~- 593 (771)
+.++...++.|..... ..+.|+|++-||.+.. ...|...++.+++.||.|..++++|+..-+.......+....
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4556677888865321 2478999999995544 567888999999999999999999965322222112211111
Q ss_pred ---ccchhhHHHHHHHHHHc---C----CCCCCeEEEEEcChhHHHHHHHHHhCC
Q 004149 594 ---SQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 594 ---~~~~~D~~~~i~~l~~~---~----~~d~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
.....|+...+++|.+. + .+|..+|+++|||+||+.++.++..+.
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 12367888888888876 4 378999999999999999999887554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-07 Score=96.76 Aligned_cols=214 Identities=12% Similarity=0.063 Sum_probs=120.4
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCcc----eEEEecCCcccccccCCCcccceeecCCCC-eEEEEec
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~ 172 (771)
+.+...+||| |++.||..+.+. .-.+|.+..++.. ..+..+. +... .+..+.|+|++. .|+..+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~Dg--tIkIWdi~~~~~~~~~~~~l~~L~-gH~~------~V~~l~f~P~~~~iLaSgs- 145 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDG--TIMGWGIPEEGLTQNISDPIVHLQ-GHTK------KVGIVSFHPSAMNVLASAG- 145 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC--EEEEEecCCCccccccCcceEEec-CCCC------cEEEEEeCcCCCCEEEEEe-
Confidence 5688999999 888887765543 2223333222211 1111111 1111 236899999875 444432
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.+..|.+||+.+++..... ......+..+.|+|||+
T Consensus 146 -------------------------------------------~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 146 -------------------------------------------ADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGS 181 (493)
T ss_pred -------------------------------------------CCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCC
Confidence 2367999999988755441 22344688999999998
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCcc-ccceeecCCCCE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS-AFFPRFSPDGKF 330 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~-~~~p~~SpDG~~ 330 (771)
. |+..+ .+..|.++|+ .+++ ...+..+.+. .....|+|++..
T Consensus 182 l----Latgs---------------~Dg~IrIwD~-----------------rsg~~v~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 182 L----LCTTS---------------KDKKLNIIDP-----------------RDGTIVSSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred E----EEEec---------------CCCEEEEEEC-----------------CCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence 6 66655 3347888887 4443 3344433332 346789999988
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|+...... ....+|.+||+..... .+... . . ... .....+.|++|++.|+..+..+
T Consensus 226 ivt~G~s~-------s~Dr~VklWDlr~~~~-p~~~~-----~---~---d~~-----~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 226 IITLGCSK-------SQQRQIMLWDTRKMAS-PYSTV-----D---L---DQS-----SALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEecCC-------CCCCeEEEEeCCCCCC-ceeEe-----c---c---CCC-----CceEEEEEcCCCCEEEEEEeCC
Confidence 77655332 1235688999865332 11000 0 0 000 0122346889998776654445
Q ss_pred CeeEEEEEECCCCcEEEe
Q 004149 411 SSQVIISVNVSSGELLRI 428 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l 428 (771)
+...+| ++.++++...
T Consensus 282 g~Iriw--dl~~~~~~~~ 297 (493)
T PTZ00421 282 GNIRCF--ELMNERLTFC 297 (493)
T ss_pred CeEEEE--EeeCCceEEE
Confidence 554555 5556665443
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-09 Score=119.99 Aligned_cols=132 Identities=21% Similarity=0.198 Sum_probs=85.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~V~~~d~rG-~~~~g~~~~~~~~~~ 591 (771)
+.|.+ ..-+|.|.......+.|++|++|||++..... ........++..+++||.++||- .-|+-........
T Consensus 105 sEDCL--~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~-- 180 (535)
T PF00135_consen 105 SEDCL--YLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP-- 180 (535)
T ss_dssp ES-----EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH--
T ss_pred CchHH--HHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC--
Confidence 34554 44588898765555799999999998776554 33444566788999999999993 1111100000001
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCc
Q 004149 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 650 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~ 650 (771)
.+..-+.|...|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.++.
T Consensus 181 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 181 SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 1334488999999999986 236999999999999999999887652 3589999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-08 Score=100.32 Aligned_cols=228 Identities=17% Similarity=0.185 Sum_probs=129.7
Q ss_pred CCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHCCcEEEEECCC--CC---------CCCChhhhhc-CCC--Cccccch
Q 004149 533 DCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYR--GS---------LGFGEEALQS-LPG--KVGSQDV 597 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~G~~V~~~d~r--G~---------~~~g~~~~~~-~~~--~~~~~~~ 597 (771)
.+++.|+++++||-.... ........-+.....|++++++|-. +. -|.+-+|... ... ..+....
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~ 129 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQW 129 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccch
Confidence 457889999999944331 0111222334456788999988532 10 0011111110 000 0111233
Q ss_pred hhHH-HHHH-HHHHcCCCCC--CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 598 NDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 598 ~D~~-~~i~-~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
++++ .-+- .+.+....+. ++.+|+||||||+-|+.+|.++|++|+.+...+|+++........ . .+...++.
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~-~---~~~~~~g~ 205 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPT-L---AMGDPWGG 205 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccccccc-c---cccccccC
Confidence 4433 1222 3333333444 388999999999999999999999999999999998765322222 0 00000011
Q ss_pred CCCCcCCCCCChhhHHHHhhcCccccccC--------------CCCcEEEEeeCCCCccC--cHHHHHHHHHHHhCCCCE
Q 004149 674 KGKDSFTESPSVEDLTRFHSKSPISHISK--------------VKTPTIFLLGAQDLRVP--VSNGLQYARALREKGVET 737 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--------------i~~P~Lii~G~~D~~vp--~~~~~~~~~~l~~~g~~~ 737 (771)
.....+.+.. ....+.+.+|...+.+ ...++++-+|..|.+.. ....+.+.+++++.|.+.
T Consensus 206 ~~~~~~~G~~---~~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~ 282 (316)
T COG0627 206 KAFNAMLGPD---SDPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPN 282 (316)
T ss_pred ccHHHhcCCC---ccccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCc
Confidence 0000011111 0112333333333322 44678888999998874 334788999999999999
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 738 KVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
.+...++..|.+. .....+...+.|+.+.|
T Consensus 283 ~~~~~~~G~Hsw~---~w~~~l~~~~~~~a~~l 312 (316)
T COG0627 283 GVRDQPGGDHSWY---FWASQLADHLPWLAGAL 312 (316)
T ss_pred eeeeCCCCCcCHH---HHHHHHHHHHHHHHHHh
Confidence 9888888899764 23456778888887765
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-08 Score=90.07 Aligned_cols=168 Identities=19% Similarity=0.231 Sum_probs=96.3
Q ss_pred EEEEcCCCCCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004149 540 IVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
|+++||...+.. ..|.... ..+... +.|-.++... .+.++....++..+.. + .+.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~~------------------P~~~~W~~~l~~~i~~--~-~~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWDN------------------PDLDEWVQALDQAIDA--I-DEPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--TS--------------------HHHHHHHHHHCCHC----TTTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccCC------------------CCHHHHHHHHHHHHhh--c-CCCe
Confidence 678899665543 4565544 455554 7777666411 1244444444433332 3 3469
Q ss_pred EEEEcChhHHHHHHHH-HhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCcc
Q 004149 619 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
.|+|||.|+..++.++ ......++++++.+|....... . ..+ . ...+. ..|.
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~-~--~~~------~-----~~~f~-------------~~p~ 110 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE-P--FPP------E-----LDGFT-------------PLPR 110 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH-C--CTC------G-----GCCCT-------------TSHC
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc-c--hhh------h-----ccccc-------------cCcc
Confidence 9999999999999999 6677899999999997431000 0 000 0 00000 0011
Q ss_pred ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 698 ~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+..|.+++.+++|+.+|++.+..+.+.+. .+++.++++||..... ...-+..+.+.|+
T Consensus 111 ---~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~-----a~~~~~~~~GHf~~~~--G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 111 ---DPLPFPSIVIASDNDPYVPFERAQRLAQRLG-----AELIILGGGGHFNAAS--GFGPWPEGLDLLQ 170 (171)
T ss_dssp ---CHHHCCEEEEEETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSSGGG--THSS-HHHHHHHH
T ss_pred ---cccCCCeEEEEcCCCCccCHHHHHHHHHHcC-----CCeEECCCCCCccccc--CCCchHHHHHHhc
Confidence 1223566999999999999999999999985 5899999999965421 1223455555544
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-07 Score=95.65 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=133.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
+.+...+||||-++|+-.+++. ...+|.-.....++.-. +... +...+.|+|-|-+.|..+.+.+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s~~V~y~-GH~~------PVwdV~F~P~GyYFatas~D~tAr- 518 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWSCLVIYK-GHLA------PVWDVQFAPRGYYFATASHDQTAR- 518 (707)
T ss_pred CceeeeeecccccceeeccCCc-----ceeeeecccceeEEEec-CCCc------ceeeEEecCCceEEEecCCCceee-
Confidence 5688889999999998665543 34555222222222221 2111 225788999997777776666543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.|........+.+..+..-.+-+.|-|+-....++..+..+.+||+.+|..+++- +.....+..+++||+|++ |
T Consensus 519 -LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~----L 592 (707)
T KOG0263|consen 519 -LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY----L 592 (707)
T ss_pred -eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce----E
Confidence 5554444444444445444455667777666667778899999999998877773 345567899999999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+-.+ ....|-++|+ .++ ....+-.+.+.+.+..||.||..||..+.+
T Consensus 593 aSg~---------------ed~~I~iWDl-----------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 593 ASGD---------------EDGLIKIWDL-----------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred eecc---------------cCCcEEEEEc-----------------CCCcchhhhhcccCceeEEEEecCCCEEEecCCC
Confidence 8765 2336888888 454 456677777889999999999988866654
Q ss_pred CCCCCCCccccccceeeecCC
Q 004149 338 SSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~ 358 (771)
++|.+||+..
T Consensus 641 -----------nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 -----------NSVRLWDLTK 650 (707)
T ss_pred -----------CeEEEEEchh
Confidence 4577778643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.3e-08 Score=91.77 Aligned_cols=247 Identities=13% Similarity=0.176 Sum_probs=149.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+....|||||++|+-.+-++ ++++| ..|+.++-..-... ..-..-|....+++||.|.+.||..+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDG-----FiEVWny~~GKlrKDLkYQAq-d~fMMmd~aVlci~FSRDsEMlAsGs------ 282 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDG-----FIEVWNYTTGKLRKDLKYQAQ-DNFMMMDDAVLCISFSRDSEMLASGS------ 282 (508)
T ss_pred chhheeeCCCCceEeeccccc-----eeeeehhccchhhhhhhhhhh-cceeecccceEEEeecccHHHhhccC------
Confidence 355689999999998765544 88899 45555443221100 00011233446899999998887743
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee-eccCCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~-~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.+..|-+|.+.+|... +.. -....++..+.||.|+..
T Consensus 283 --------------------------------------qDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~Sq--- 320 (508)
T KOG0275|consen 283 --------------------------------------QDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQ--- 320 (508)
T ss_pred --------------------------------------cCCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcch---
Confidence 3357888999888753 332 234457889999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+-.+.. ..+.+.-+ .+|+ .+.+..+...+....|++||..|+-.+
T Consensus 321 -iLS~sfD---------------~tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 321 -ILSASFD---------------QTVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred -hhccccc---------------ceEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 8877632 13444444 4454 455666677789999999999999888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC-CEEEEEeeeCCeeE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG-CTMLLSSIWGSSQV 414 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~ 414 (771)
.+. .+.+|+.++++-........ .+. .+.++-..|.+ ..+++ . .....
T Consensus 368 sDg-----------tvkvW~~KtteC~~Tfk~~~-----------~d~------~vnsv~~~PKnpeh~iV-C--Nrsnt 416 (508)
T KOG0275|consen 368 SDG-----------TVKVWHGKTTECLSTFKPLG-----------TDY------PVNSVILLPKNPEHFIV-C--NRSNT 416 (508)
T ss_pred CCc-----------cEEEecCcchhhhhhccCCC-----------Ccc------cceeEEEcCCCCceEEE-E--cCCCe
Confidence 764 37788877765421110000 000 01111122221 12222 1 12356
Q ss_pred EEEEECCCCcEEEecCCC---CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 415 IISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~---~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+|.+++.+.-++..+.+. +++-...+||.|.++|++..+. .+|.+...++
T Consensus 417 v~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG 469 (508)
T KOG0275|consen 417 VYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSG 469 (508)
T ss_pred EEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEeecC
Confidence 888998654455554432 3555678999999999988653 4666555444
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-07 Score=104.73 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=92.6
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-----------cce-----EEEecCCcccccccCCCcccceee
Q 004149 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-----------QLE-----KEFHVPQTVHGSVYADGWFEGISW 160 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-----------~~~-----~~~~~~~~~~g~~~~~~~~~~~~w 160 (771)
.+.+.-+.|||||++||+.++.. +..+| ... ... +....-.+. +..+..+.|
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~-----~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H------~~DV~Dv~W 137 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDR-----LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH------DSDVLDVNW 137 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcc-----eEEEeeecccCCcccccccccccccceeeEEEEEecC------CCccceecc
Confidence 35688899999999999976653 77777 221 000 000000111 122368999
Q ss_pred cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC
Q 004149 161 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 240 (771)
Q Consensus 161 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~ 240 (771)
|||+..|+..+-+ ..+.+||..+-+...+. .....
T Consensus 138 sp~~~~lvS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s 172 (942)
T KOG0973|consen 138 SPDDSLLVSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQS 172 (942)
T ss_pred CCCccEEEEeccc--------------------------------------------ceEEEEccccceeeeee-ecccc
Confidence 9999999886433 67888998776544431 33445
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC----
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI---- 316 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~---- 316 (771)
-+..++|-|-|++ ++..+. +| .|-+++.. +.+-.+.++...
T Consensus 173 ~VKGvs~DP~Gky----~ASqsd-------------Dr--tikvwrt~----------------dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 173 LVKGVSWDPIGKY----FASQSD-------------DR--TLKVWRTS----------------DWGIEKSITKPFEESP 217 (942)
T ss_pred cccceEECCccCe----eeeecC-------------Cc--eEEEEEcc----------------cceeeEeeccchhhCC
Confidence 6788999999998 887762 22 33333331 334444555432
Q ss_pred --ccccceeecCCCCEEEEEec
Q 004149 317 --SSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 317 --~~~~~p~~SpDG~~l~f~~~ 336 (771)
.....+.|||||++|+..-.
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred CcceeeecccCCCcCeecchhh
Confidence 23678999999999886543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.8e-08 Score=95.51 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=151.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.|++|+++|-.+. ..+.-+|.+.- +.. ..|.. .+-.....+....||||.++|+--...+ ...
T Consensus 232 FS~nGkyLAsaSk-------D~Taiiw~v~~--d~~--~kl~~-tlvgh~~~V~yi~wSPDdryLlaCg~~e-----~~~ 294 (519)
T KOG0293|consen 232 FSHNGKYLASASK-------DSTAIIWIVVY--DVH--FKLKK-TLVGHSQPVSYIMWSPDDRYLLACGFDE-----VLS 294 (519)
T ss_pred EcCCCeeEeeccC-------CceEEEEEEec--Ccc--eeeee-eeecccCceEEEEECCCCCeEEecCchH-----hee
Confidence 3789998887543 23456666442 222 11110 1111225688999999999997654333 455
Q ss_pred Ee--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCC-CCccccc
Q 004149 129 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW-KGQGDWE 205 (771)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 205 (771)
+| +.|..++......+. ...+.+|-|||.+++..+.+...- .|+ ..+.....++..... .......
T Consensus 295 lwDv~tgd~~~~y~~~~~~--------S~~sc~W~pDg~~~V~Gs~dr~i~--~wd-lDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGF--------SVSSCAWCPDGFRFVTGSPDRTII--MWD-LDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred eccCCcchhhhhcccCcCC--------CcceeEEccCCceeEecCCCCcEE--Eec-CCcchhhcccccccceeEEEEEc
Confidence 66 445544443322111 125889999999988766553211 111 111111222221111 1233344
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004149 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
.|+...+.......|.+++.++...+.+ +..+..+.++..|-||+. +.+.- .+..|..+
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~-----~LvnL--------------~~qei~LW 422 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKL-----ALVNL--------------QDQEIHLW 422 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhcc--ccccCceeEEEEcCCCcE-----EEEEc--------------ccCeeEEe
Confidence 5544444444567888888887766656 566678899999999995 44331 22368888
Q ss_pred ecccccchhhhhhhhcCCCCCCc-ceecCCCCc---cccceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 286 RVSLYKSEASELELKESSSEDLP-VVNLTESIS---SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~---~~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
|+ +... +++-..+.. .+++ .|- -|.+.|+-.+. ..++|+|+..+|.
T Consensus 423 Dl-----------------~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSE-----------D~kvyIWhr~sgk 473 (519)
T KOG0293|consen 423 DL-----------------EENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSE-----------DSKVYIWHRISGK 473 (519)
T ss_pred ec-----------------chhhHHHHhhcccccceEEEe-ccCCCCcceEEecCC-----------CceEEEEEccCCc
Confidence 87 3211 222222111 1111 222 12233332222 3579999988887
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
.....++... .+.-++|.|-....+.+++++++.+||...
T Consensus 474 ll~~LsGHs~-------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 474 LLAVLSGHSK-------------------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeEeecCCcc-------------------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 6544333311 234568999999998999999999999754
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=89.99 Aligned_cols=206 Identities=16% Similarity=0.120 Sum_probs=108.3
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC--
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 611 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 611 (771)
..+..++.|.|-|+... .|..+...|.. -+.++.+.|+|.+. . .+.....|+...++.+....
T Consensus 5 ~~~~~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPGR~~---r--------~~ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPGRGD---R--------FGEPLLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCCccc---c--------cCCcccccHHHHHHHHHHHhcc
Confidence 34445666666665543 34444444432 48899999999432 2 22223455555555555432
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEe---cCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCC-
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAA---RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS- 684 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 684 (771)
..-....+++||||||.+|..+|.+... ...+..+ .+|..+ .........+-.+...+ ..+.+.+.
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~--~~~~i~~~~D~~~l~~l-----~~lgG~p~e 142 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYD--RGKQIHHLDDADFLADL-----VDLGGTPPE 142 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCc--ccCCccCCCHHHHHHHH-----HHhCCCChH
Confidence 1233579999999999999999875311 1223222 223111 11111111111111111 11222221
Q ss_pred -hhhHHHHhhcCc-----------ccc--ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 685 -VEDLTRFHSKSP-----------ISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 685 -~~~~~~~~~~sp-----------~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
.++.+.+.-.-| +.+ -..+.+|+.++.|++|..|..++...+.+..+. ..++.+++| ||.+.
T Consensus 143 ~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl 218 (244)
T COG3208 143 LLEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFL 218 (244)
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceeh
Confidence 112222111111 111 135789999999999999987776666665543 589999975 89876
Q ss_pred CCCChHHHHHHHHHHH
Q 004149 751 RPQSDFESFLNIGLWF 766 (771)
Q Consensus 751 ~~~~~~~~~~~i~~wl 766 (771)
. +...++...|...+
T Consensus 219 ~-~~~~~v~~~i~~~l 233 (244)
T COG3208 219 N-QQREEVLARLEQHL 233 (244)
T ss_pred h-hhHHHHHHHHHHHh
Confidence 3 33334445554444
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-07 Score=93.66 Aligned_cols=235 Identities=14% Similarity=0.095 Sum_probs=130.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh-hcC---CCC-----
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-QSL---PGK----- 591 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~-~~~---~~~----- 591 (771)
.+..++.|+.. ..+.+|++|.+.|.+...+.......+..|.+.|+..+.+..+- ||..-. +.. ...
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 44557778754 34568999999996554333333344777888899999988654 332111 000 001
Q ss_pred -ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-hhhc-CCCCCcchhh
Q 004149 592 -VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVG-TTDIPDWCYV 668 (771)
Q Consensus 592 -~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~-~~~~~~~~~~ 668 (771)
.+...+.++...+.|+.+++ ..+++|.|.||||.+|.++++..|..+..+-+.++..... ...+ .....+|...
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G---~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L 229 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREG---YGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDAL 229 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcC---CCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHH
Confidence 12334667778889999885 3589999999999999999999988766555555432210 0001 1111233221
Q ss_pred hhc-cCCC--------------CCcC---CCCCChhhHH-HHhhcCccccccCCCC-----cEEEEeeCCCCccCcHHHH
Q 004149 669 ESY-GSKG--------------KDSF---TESPSVEDLT-RFHSKSPISHISKVKT-----PTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 669 ~~~-~~~~--------------~~~~---~~~~~~~~~~-~~~~~sp~~~~~~i~~-----P~Lii~G~~D~~vp~~~~~ 724 (771)
+.- .... .... ......+... ....+.-..++.+..+ .+.++.+++|..||.++..
T Consensus 230 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~ 309 (348)
T PF09752_consen 230 EKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVL 309 (348)
T ss_pred HHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcc
Confidence 111 0000 0000 0000011111 1111222233443333 3788899999999987766
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.+.+... .+++.++++ ||.-...-+...+.+.|.+=|+
T Consensus 310 ~Lq~~WP----GsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 310 SLQEIWP----GSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hHHHhCC----CCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 6555443 367778876 9964433334455566665443
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-07 Score=95.01 Aligned_cols=100 Identities=25% Similarity=0.380 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH---CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.|.|+++||.+... ..|......+.. . |.|+.+|+||. |.+. . . ..........+..+.+..
T Consensus 21 ~~~i~~~hg~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~~g~---g~s~-~-~-----~~~~~~~~~~~~~~~~~~-- 85 (282)
T COG0596 21 GPPLVLLHGFPGSS--SVWRPVFKVLPALAAR-YRVIAPDLRGH---GRSD-P-A-----GYSLSAYADDLAALLDAL-- 85 (282)
T ss_pred CCeEEEeCCCCCch--hhhHHHHHHhhccccc-eEEEEecccCC---CCCC-c-c-----cccHHHHHHHHHHHHHHh--
Confidence 45899999977653 233332222222 3 99999999984 4332 0 0 111112233333333332
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
...++.++|||+||.+++.++.++|+.++++++.++..
T Consensus 86 ~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 86 GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 23449999999999999999999999999999888654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.6e-07 Score=84.59 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=170.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+....|+|||..+|-. +..+.+.+| -.+.......+ .+..|.| .++.|++|+..|+..+.++...
T Consensus 48 geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~~l-kgHsgAV------M~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFWVL-KGHSGAV------MELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ceEEEEEECCCCCeEeec-----CCcceEEEEeccccccceeee-cccccee------EeeeeccCCCEEEEecCCceEE
Confidence 668889999999988753 444456667 23332222211 2333344 6899999999999888776543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCccc--CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.|+...++...+.+.+....+... -.+.|.++ ++....++.+||....+..++ .+.......+.|.-++..
T Consensus 116 --~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~s~q-- 188 (338)
T KOG0265|consen 116 --GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDTSDQ-- 188 (338)
T ss_pred --EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecccccc--
Confidence 455555555555444444443333 11223332 233567999999988877777 566778889999999987
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
+.-.. -+.+|-++|+- ...-.-.|+.+...+.....||+|..|.-.+
T Consensus 189 --v~sgg---------------Idn~ikvWd~r----------------~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 189 --VISGG---------------IDNDIKVWDLR----------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred --eeecc---------------ccCceeeeccc----------------cCcceEEeecccCceeeEEeccCCCcccccc
Confidence 55444 12255666651 2223455666777899999999999988777
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
.+. .|.+||...-...+- -+.+.+... - .++-++-..+|||++..+-+.+. ...+
T Consensus 236 Md~-----------tvrvwd~rp~~p~~R------~v~if~g~~-h----nfeknlL~cswsp~~~~i~ags~---dr~v 290 (338)
T KOG0265|consen 236 MDN-----------TVRVWDVRPFAPSQR------CVKIFQGHI-H----NFEKNLLKCSWSPNGTKITAGSA---DRFV 290 (338)
T ss_pred ccc-----------eEEEEEecccCCCCc------eEEEeecch-h----hhhhhcceeeccCCCCccccccc---cceE
Confidence 664 466777543222100 011111100 0 01223446789999997755443 3458
Q ss_pred EEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEE
Q 004149 416 ISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 416 ~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~ 463 (771)
|.+|..+.... .|....+.+....|.|....|+..+++ .+||+.
T Consensus 291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd----k~i~lg 335 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD----KTIYLG 335 (338)
T ss_pred EEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC----ceeEee
Confidence 88897664443 444444566667888877766544433 335654
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=100.33 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=77.0
Q ss_pred CCcEEEEEcCCCCCCCCCcchH-HHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSK-SLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~-~~~-~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..|++|++||..... ...|.. ... ++...+|.|+++|+++.... .+.... . ......+++...+++|.+...+
T Consensus 35 ~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~--~y~~a~-~-~~~~v~~~la~~l~~L~~~~g~ 109 (275)
T cd00707 35 SRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANP--NYPQAV-N-NTRVVGAELAKFLDFLVDNTGL 109 (275)
T ss_pred CCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECcccccc--ChHHHH-H-hHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999966543 234433 333 34456899999999974211 000000 0 0011135677788888776446
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 652 (771)
+.+++.|+|||+||+++..++.++|++++.++++.|...
T Consensus 110 ~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 110 SLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred ChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 778999999999999999999999999999999988643
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.6e-08 Score=102.87 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=76.1
Q ss_pred CCcEEEEEcCCCCCCCCCcchH-HHHHHH-H-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSK-SLAFLS-S-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~-~~~~la-~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|++|++||.........|.. ....|. . ..|.|+++|++|. |.+...... .......+++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~---g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSR---AQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCc---CCCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 3588999999664322234544 344443 2 3699999999984 332111101 1111123566777788766544
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.+++.|+||||||.+|..++..+|+++..+++..|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 677899999999999999999998899999999988854
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-06 Score=83.83 Aligned_cols=297 Identities=13% Similarity=0.060 Sum_probs=156.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++..-.-++|+++...|++-..++.|++|++..=..+..+.....++. .....++|+||-+.+++.-.++ .+-.+|.
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g-~~l~vyk 161 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRG-NKLCVYK 161 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEccC-CEEEEEE
Confidence 344445666776666666666777888877743222222222222222 3567899999999998876644 4444555
Q ss_pred Ee---cCCcceEEEecCC----cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004149 129 LW---SQSQLEKEFHVPQ----TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 129 ~~---~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
+. +++-.-..+..+. ..|.. ....+-..-.++.|+..+
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v-----~~i~iGiA~~~k~imsas------------------------------ 206 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQV-----DIINIGIAGNAKYIMSAS------------------------------ 206 (420)
T ss_pred eeecccCCCCcccccccccccchhccc-----ceEEEeecCCceEEEEec------------------------------
Confidence 54 1211111111110 01100 001233444444444432
Q ss_pred ccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 202 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
....|++|++.+.....+ -.........+-||||+. |+..+... +
T Consensus 207 --------------~dt~i~lw~lkGq~L~~i--dtnq~~n~~aavSP~GRF----ia~~gFTp---------------D 251 (420)
T KOG2096|consen 207 --------------LDTKICLWDLKGQLLQSI--DTNQSSNYDAAVSPDGRF----IAVSGFTP---------------D 251 (420)
T ss_pred --------------CCCcEEEEecCCceeeee--ccccccccceeeCCCCcE----EEEecCCC---------------C
Confidence 236899999996655555 233445667899999998 88776322 2
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC--CC
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TN 359 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~--~~ 359 (771)
+.++.+--+ +++..+ +-...-.|..+...+...+|||+.++++..+.+. ..+||-.|+. .+
T Consensus 252 VkVwE~~f~--kdG~fq------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---------~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 252 VKVWEPIFT--KDGTFQ------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---------KWRIWDTDVRYEAG 314 (420)
T ss_pred ceEEEEEec--cCcchh------hhhhhheeccchhheeeeeeCCCcceeEEEecCC---------cEEEeeccceEecC
Confidence 333322100 011110 1122345566677789999999999999999774 3455544431 11
Q ss_pred -CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec-C-CCCCce
Q 004149 360 -GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT-P-AESNFS 436 (771)
Q Consensus 360 -~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-~-~~~~~~ 436 (771)
..+.+-.+.. +. +- -....-.+..||.|+.|.++. ++..++| ...+|+...-. . ....+.
T Consensus 315 qDpk~Lk~g~~--------pl--~a---ag~~p~RL~lsP~g~~lA~s~--gs~l~~~--~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 315 QDPKILKEGSA--------PL--HA---AGSEPVRLELSPSGDSLAVSF--GSDLKVF--ASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred CCchHhhcCCc--------ch--hh---cCCCceEEEeCCCCcEEEeec--CCceEEE--EcccCccchhHHHhhcCcee
Confidence 1111111100 00 00 001123567899999665543 4444444 55556544322 2 123567
Q ss_pred eeEEeecCCEEEEEEe
Q 004149 437 WSLLTLDGDNIIAVSS 452 (771)
Q Consensus 437 ~~~~s~d~~~l~~~~s 452 (771)
...|+++|++++.+..
T Consensus 378 ~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 378 SISYSSDGKYIATCGD 393 (420)
T ss_pred eEEecCCCcEEeeecc
Confidence 7899999998886654
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=87.90 Aligned_cols=220 Identities=14% Similarity=0.158 Sum_probs=113.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~- 593 (771)
-.+|..+..|--.|+.. ...+.+.||+..|.+.. ...|...+.+|+..||.|+.+|.--.- |.+... ...+.
T Consensus 9 ~~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~rr--mdh~agLA~YL~~NGFhViRyDsl~Hv--GlSsG~--I~eftm 81 (294)
T PF02273_consen 9 LEDGRQIRVWETRPKNN-EPKRNNTILIAPGFARR--MDHFAGLAEYLSANGFHVIRYDSLNHV--GLSSGD--INEFTM 81 (294)
T ss_dssp ETTTEEEEEEEE---TT-S---S-EEEEE-TT-GG--GGGGHHHHHHHHTTT--EEEE---B-----------------H
T ss_pred cCCCCEEEEeccCCCCC-CcccCCeEEEecchhHH--HHHHHHHHHHHhhCCeEEEeccccccc--cCCCCC--hhhcch
Confidence 35688899999999854 34567899999986544 457888999999999999999965321 111100 11111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchh--hhhc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESY 671 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~--~~~~ 671 (771)
....+++..+++|+.+.+ ..+++|+-.|.-|-+|...+++ . ....+|...++.++..........++.- .+..
T Consensus 82 s~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i-~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~l 156 (294)
T PF02273_consen 82 SIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-I-NLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQL 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG-
T ss_pred HHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-c-CcceEEEEeeeeeHHHHHHHHhccchhhcchhhC
Confidence 123578889999999775 5779999999999999999985 4 3777787889998754321110000000 0000
Q ss_pred cCCCCCcCCCCCC-hhh-HHHHh------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 672 GSKGKDSFTESPS-VED-LTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 672 ~~~~~~~~~~~~~-~~~-~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
.. .-.+.+... .+. ..... ..|....++.+.+|++..++++|..|...+..++...+.. ..++++.++
T Consensus 157 p~--dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s--~~~klysl~ 232 (294)
T PF02273_consen 157 PE--DLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS--NKCKLYSLP 232 (294)
T ss_dssp -S--EEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT----EEEEEET
T ss_pred CC--cccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC--CceeEEEec
Confidence 00 000000000 000 00011 1123345778899999999999999987776666555443 358999999
Q ss_pred CCCccCC
Q 004149 744 NDVHGIE 750 (771)
Q Consensus 744 ~~~H~~~ 750 (771)
|+.|.+.
T Consensus 233 Gs~HdL~ 239 (294)
T PF02273_consen 233 GSSHDLG 239 (294)
T ss_dssp T-SS-TT
T ss_pred Cccchhh
Confidence 9999875
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-06 Score=91.66 Aligned_cols=163 Identities=8% Similarity=0.045 Sum_probs=96.3
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEecCCcc-eE----EEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQSQL-EK----EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
+.+...+|+|+ +..||..+.. +.-.+|.+..++.. .. +..+. +..+ .+..++|+|++..++..+.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~D--gtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~------~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSED--LTIRVWEIPHNDESVKEIKDPQCILK-GHKK------KISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCCccccccccceEEee-cCCC------cEEEEEECCCCCeEEEEEe
Confidence 56889999997 6777665443 22233333222211 11 11111 1111 2368999999987765422
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|.+||+.+++.... ......+..+.|+|||+
T Consensus 146 -------------------------------------------~DgtIrIWDl~tg~~~~~--i~~~~~V~SlswspdG~ 180 (568)
T PTZ00420 146 -------------------------------------------FDSFVNIWDIENEKRAFQ--INMPKKLSSLKWNIKGN 180 (568)
T ss_pred -------------------------------------------CCCeEEEEECCCCcEEEE--EecCCcEEEEEECCCCC
Confidence 236789999988875433 22334678899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccc-----cceeecC
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSA-----FFPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~-----~~p~~Sp 326 (771)
. |+..+ ....|.++|+ .+++. ..+..+.+.. ....||+
T Consensus 181 l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 181 L----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred E----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeeeEcC
Confidence 7 66554 2236888887 44433 3344443321 1224579
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
|+++|+..+.+. ....+|.+||+..
T Consensus 225 d~~~IlTtG~d~-------~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSK-------NNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCC-------CCccEEEEEECCC
Confidence 999888777553 1234699999875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-06 Score=89.03 Aligned_cols=265 Identities=12% Similarity=0.056 Sum_probs=135.8
Q ss_pred CCCCcceEEEEEee-chhhcccceeEEEEEEeecCCCCccceeecCCc--cccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 49 GNGNGTQAMFSISQ-PNLLANKRKKFMLSTVISKENENSVTFQWAPFP--VEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~--~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.|+||+.++....- .-+.+++....+.++|+.+.. ....+...+-| .........++||||++|+ +.+.. ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~-V~n~~-p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-PIADIELPEGPRFLVGTYPWMTSLTPDNKTLL-FYQFS-PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-EEeEEccCCCchhhccCccceEEECCCCCEEE-EecCC-CCCE
Confidence 57899887765541 122344455677777764331 11122211100 0012344788999999985 44432 2345
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCC-CCCCCCCccCCCCCCccc
Q 004149 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 203 (771)
+-.++ ..++....+.++...+. |.-..-.....+.||+.+.+..+...... .-.... .......... . .
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~v--y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~r-----P-~ 200 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHI--FPTANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINH-----P-A 200 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEE--EEecCCccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccC-----C-c
Confidence 66666 45555555555443332 22211234456789987765544332210 000000 0000000000 0 2
Q ss_pred ccC-CcCcccCCccCceEEEEEccCCceeeccC----CC----CCCccc---eEEEecCCCCCccEEEEEeecCcceeee
Q 004149 204 WEE-DWGETYAGKRQPSLFVININSGEVQAVKG----IP----KSLSVG---QVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 204 ~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~----~~----~~~~~~---~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
|.+ |....++. ....|+++|+.+.+...... +. ..+..+ .++++|||++ ++........
T Consensus 201 ~~~~dg~~~~vs-~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~----lyV~~~~~~~---- 271 (352)
T TIGR02658 201 YSNKSGRLVWPT-YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR----IYLLADQRAK---- 271 (352)
T ss_pred eEcCCCcEEEEe-cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE----EEEEecCCcc----
Confidence 333 43333333 33899999976654433310 11 122233 3899999997 6653421110
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
+.+ .....+|+.+|. .+++...-...........+||||+.++|..+.. ...|
T Consensus 272 ~th-k~~~~~V~ViD~-----------------~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~---------s~~V 324 (352)
T TIGR02658 272 WTH-KTASRFLFVVDA-----------------KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG---------DKTL 324 (352)
T ss_pred ccc-cCCCCEEEEEEC-----------------CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC---------CCcE
Confidence 000 012248999998 6666543323344677899999999677777654 2469
Q ss_pred eeeecCCCCC
Q 004149 352 HRIDWPTNGN 361 (771)
Q Consensus 352 ~~~d~~~~~~ 361 (771)
.++|..+++.
T Consensus 325 sViD~~t~k~ 334 (352)
T TIGR02658 325 YIFDAETGKE 334 (352)
T ss_pred EEEECcCCeE
Confidence 9999888764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-07 Score=102.56 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCC
Q 004149 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESI 316 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~ 316 (771)
++..+.++.||||+.. +|-++. ...|.+++. .+ ...+.+-.+.
T Consensus 128 H~~DV~Dv~Wsp~~~~----lvS~s~---------------DnsViiwn~-----------------~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSL----LVSVSL---------------DNSVIIWNA-----------------KTFELLKVLRGHQ 171 (942)
T ss_pred CCCccceeccCCCccE----EEEecc---------------cceEEEEcc-----------------ccceeeeeeeccc
Confidence 4445778899999997 777762 225777775 33 3456666777
Q ss_pred ccccceeecCCCCEEEEEecCC
Q 004149 317 SSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+-...|.|-|++|+..+.+.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred ccccceEECCccCeeeeecCCc
Confidence 7899999999999999888765
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-06 Score=90.24 Aligned_cols=238 Identities=15% Similarity=0.098 Sum_probs=158.0
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
...+|+--|.+|||.+.+- ..--.|.-....-..+.+.+..-.....|++|+....++..+..+-+||..+|-....-
T Consensus 311 ~t~~~N~tGDWiA~g~~kl-gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF- 388 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKL-GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF- 388 (893)
T ss_pred eEEEecccCCEEEEcCCcc-ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-
Confidence 5889999999999976541 11112221111112223334444456779999767777788899999999988654432
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
+.....+..+.|+.+|+. |+-.+ -++.+..+|+- .....+.+|..
T Consensus 389 teHts~Vt~v~f~~~g~~----llssS---------------LDGtVRAwDlk----------------RYrNfRTft~P 433 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNV----LLSSS---------------LDGTVRAWDLK----------------RYRNFRTFTSP 433 (893)
T ss_pred ccCCCceEEEEEEecCCE----EEEee---------------cCCeEEeeeec----------------ccceeeeecCC
Confidence 566678899999999985 55444 33467777771 23344555544
Q ss_pred Cc-cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 316 IS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 316 ~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
.. .....+..|.|. |++....+ ...|++|++++|+..-+.++... -+..+
T Consensus 434 ~p~QfscvavD~sGe-lV~AG~~d---------~F~IfvWS~qTGqllDiLsGHEg-------------------PVs~l 484 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGE-LVCAGAQD---------SFEIFVWSVQTGQLLDILSGHEG-------------------PVSGL 484 (893)
T ss_pred CceeeeEEEEcCCCC-EEEeeccc---------eEEEEEEEeecCeeeehhcCCCC-------------------cceee
Confidence 33 355667777788 55655443 47899999999997655544321 24567
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
+|+|+|. ++++.+|+.+.++|-+=-..++.+.+.-... +-...|.|||+.|..+..+ .+|-..+.
T Consensus 485 ~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTld----gqItf~d~ 549 (893)
T KOG0291|consen 485 SFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATLD----GQITFFDI 549 (893)
T ss_pred EEccccC-eEEeccccceEEEEEeeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEec----ceEEEEEh
Confidence 8999998 6688899999999987666677777754432 4457899999998776543 23444444
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.9e-07 Score=88.89 Aligned_cols=169 Identities=21% Similarity=0.272 Sum_probs=104.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCC--------------hhhhhc--CCCC-c---
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFG--------------EEALQS--LPGK-V--- 592 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g--------------~~~~~~--~~~~-~--- 592 (771)
.+.++|+|||-||-++. ..-|+...-.||++||+|.+++.|-....- ..|..- ...+ .
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 36789999999996655 446788888999999999999998632210 001000 0000 0
Q ss_pred -c----ccchhhHHHHHHHHHHc---------------------CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEe
Q 004149 593 -G----SQDVNDVLTAIDHVIDM---------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646 (771)
Q Consensus 593 -~----~~~~~D~~~~i~~l~~~---------------------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 646 (771)
. ..-+.+|..|++-|.+- +.+|..+++|+|||+||..++...+.+. .|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeee
Confidence 0 01245666776655442 1256788999999999999988877654 5888887
Q ss_pred cCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHH
Q 004149 647 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726 (771)
Q Consensus 647 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~ 726 (771)
.... ++.-. .....+.+.|+|+|.-+ |... -+....
T Consensus 271 lD~W---------------M~Pl~--------------------------~~~~~~arqP~~finv~-~fQ~--~en~~v 306 (399)
T KOG3847|consen 271 LDAW---------------MFPLD--------------------------QLQYSQARQPTLFINVE-DFQW--NENLLV 306 (399)
T ss_pred eeee---------------ecccc--------------------------hhhhhhccCCeEEEEcc-cccc--hhHHHH
Confidence 6442 21100 01234567899988833 3222 233444
Q ss_pred HHHHHhCCCCEEEEEeCCCCcc
Q 004149 727 ARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+.....+..-.++.+.|+-|.
T Consensus 307 mKki~~~n~g~~~it~~GsVHq 328 (399)
T KOG3847|consen 307 MKKIESQNEGNHVITLDGSVHQ 328 (399)
T ss_pred HHhhhCCCccceEEEEccceec
Confidence 4555555555678888888884
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-06 Score=93.59 Aligned_cols=264 Identities=15% Similarity=0.115 Sum_probs=147.3
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC---
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--- 122 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--- 122 (771)
....||||++|+|+.+... .....++.+++.++ +. + ...+.. .....+.|++||+.+.|++.....
T Consensus 128 ~~~~Spdg~~la~~~s~~G----~e~~~l~v~Dl~tg--~~--l-~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGG----SEWYTLRVFDLETG--KF--L-PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETT----SSEEEEEEEETTTT--EE--E-EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeECCCCCEEEEEecCCC----CceEEEEEEECCCC--cC--c-CCcccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 3446899999999987643 45567888777443 11 1 111111 112238999999999999876532
Q ss_pred ----CCeEEEEecCCc-ce--EEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004149 123 ----SPIQFELWSQSQ-LE--KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 123 ----~~~~~~~~~~~~-~~--~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
..+++....+.. .. .+....... .++..+.+|+||++|+..+....
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~-------~~~~~~~~s~d~~~l~i~~~~~~-------------------- 249 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEP-------FWFVSVSRSKDGRYLFISSSSGT-------------------- 249 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-------TSEEEEEE-TTSSEEEEEEESSS--------------------
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCC-------cEEEEEEecCcccEEEEEEEccc--------------------
Confidence 233444443322 22 233322211 01347889999999887655431
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCC-----ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004149 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSG-----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-----~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
....+|++|+..+ +.+.+ .+.........-.. |.. +++.++.+.+
T Consensus 250 --------------------~~s~v~~~d~~~~~~~~~~~~~l--~~~~~~~~~~v~~~-~~~----~yi~Tn~~a~--- 299 (414)
T PF02897_consen 250 --------------------SESEVYLLDLDDGGSPDAKPKLL--SPREDGVEYYVDHH-GDR----LYILTNDDAP--- 299 (414)
T ss_dssp --------------------SEEEEEEEECCCTTTSS-SEEEE--EESSSS-EEEEEEE-TTE----EEEEE-TT-T---
T ss_pred --------------------cCCeEEEEeccccCCCcCCcEEE--eCCCCceEEEEEcc-CCE----EEEeeCCCCC---
Confidence 1278999999875 56666 33322222222122 666 8888765443
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004149 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
+..|+.+++ +... ...+..+.....--.++..+++|++....+
T Consensus 300 --------~~~l~~~~l-----------------~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-------- 346 (414)
T PF02897_consen 300 --------NGRLVAVDL-----------------ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-------- 346 (414)
T ss_dssp --------T-EEEEEET-----------------TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET--------
T ss_pred --------CcEEEEecc-----------------cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC--------
Confidence 348999998 3322 223444433223344566788898888775
Q ss_pred ccccceeeecC-CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECCCCc
Q 004149 347 ATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGE 424 (771)
Q Consensus 347 ~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~-~~~~l~~~d~~tg~ 424 (771)
...+|.++++. +.....+... ..+ .+......+++..++|..+.- ....+|.+|+.+++
T Consensus 347 ~~~~l~v~~~~~~~~~~~~~~p-----------~~g--------~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 347 GSSRLRVYDLDDGKESREIPLP-----------EAG--------SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp TEEEEEEEETT-TEEEEEEESS-----------SSS--------EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CccEEEEEECCCCcEEeeecCC-----------cce--------EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 36789999988 3222111100 000 111223345677777766543 44579999999999
Q ss_pred EEEec
Q 004149 425 LLRIT 429 (771)
Q Consensus 425 ~~~l~ 429 (771)
.+.+.
T Consensus 408 ~~~~k 412 (414)
T PF02897_consen 408 LTLLK 412 (414)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-06 Score=83.87 Aligned_cols=210 Identities=13% Similarity=0.166 Sum_probs=112.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH-HHHHHHCCcEE-EEECCCC---------CCCCChhh-
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVGYSL-LIVNYRG---------SLGFGEEA- 584 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~-~~~la~~G~~V-~~~d~rG---------~~~~g~~~- 584 (771)
.|...+.++..|+++.++.++|+|.++-|.... ...... ...+++.-..| +...|+. ...|-...
T Consensus 19 ~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf---~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~DyTp~~~ 95 (264)
T COG2819 19 TGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVF---NALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYDYTPPSA 95 (264)
T ss_pred CCcEEEEEecCCCCCCCCCCCcEEEEecchhhh---chHHHHhhhhhhcCCCceEEEeccccccccccccccccCCCCCC
Confidence 467788899999988777779977777663321 111111 22233322222 2223332 11111100
Q ss_pred ---hhcC----CCCccccc--hhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh
Q 004149 585 ---LQSL----PGKVGSQD--VNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 585 ---~~~~----~~~~~~~~--~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 654 (771)
.... ....|..+ .+.+..-+. ++.++..++.++.+|+|||+||.+++.....+|+.|...++.+|..-+.
T Consensus 96 ~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~ 175 (264)
T COG2819 96 NAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWH 175 (264)
T ss_pred CcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhC
Confidence 0000 11111111 233333333 4444466899999999999999999999999999999999999965221
Q ss_pred hhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEe--eCCCCc------cCcHHHHHH
Q 004149 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL--GAQDLR------VPVSNGLQY 726 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~--G~~D~~------vp~~~~~~~ 726 (771)
+...+....-.... + ..++.|+. |+.|.- ....++.+.
T Consensus 176 --------------------------------n~~~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 176 --------------------------------NEAILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred --------------------------------CHHHhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 11111111111111 2 33444444 443432 122344555
Q ss_pred HHHHHh-CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 727 ARALRE-KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 727 ~~~l~~-~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.+.+++ .|..+.+..+++.+|+-. ....+..++.|+.
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred HHHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 556666 677888889998888643 1233445555543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.1e-06 Score=91.01 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=95.6
Q ss_pred eCCCCCeEEEEecCC-CCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCC-CCeEEEEecCCCCCCCCccC
Q 004149 106 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 106 ~SPdG~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~ 183 (771)
.+.+++++|+.-... ++...++.+|+.+....+..+. +..+.| ..++|+|+ +..||..+.+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~-gH~~~V------~~lafsP~~~~lLASgS~D---------- 96 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLK-GHTSSI------LDLQFNPCFSEILASGSED---------- 96 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEc-CCCCCE------EEEEEcCCCCCEEEEEeCC----------
Confidence 455677777766543 2344567777444333333332 111222 68999997 6777665432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---------eeccCCCCCCccceEEEecCCCCC
Q 004149 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---------~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..|.+||+.++.. ..+ ......+..+.|+|++..
T Consensus 97 ----------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 97 ----------------------------------LTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ----------------------------------CeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 5678888765321 122 223346788999999987
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
++.++. .+..|.++|+ .+++. ..+. ....+.+..|+|||+.|+.
T Consensus 140 ---iLaSgS--------------~DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSG--------------FDSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 765541 2236788887 44442 3333 3456889999999998876
Q ss_pred EecCCCCCCCCccccccceeeecCCCCC
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
...+ ..|.+||+.++..
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEI 201 (568)
T ss_pred EecC-----------CEEEEEECCCCcE
Confidence 5543 3589999887654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-06 Score=84.03 Aligned_cols=268 Identities=14% Similarity=0.108 Sum_probs=149.9
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CcceEEEecC
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVP 142 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 142 (771)
+....+.+.+.+|+.-+.+ .... -++|. ..+..-+|||+|+.+|-..- +..+.+|.+. .. ....++...-
T Consensus 70 ivSaSqDGklIvWDs~Ttn--K~ha--ipl~s--~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 70 IVSASQDGKLIVWDSFTTN--KVHA--IPLPS--SWVMTCAYSPSGNFVACGGL--DNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred EEeeccCCeEEEEEccccc--ceeE--EecCc--eeEEEEEECCCCCeEEecCc--CceeEEEecccccccccceeeeee
Confidence 3334456678887753332 2211 22232 56888999999999986422 2456777776 21 1111222111
Q ss_pred CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEE
Q 004149 143 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLF 221 (771)
Q Consensus 143 ~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~ 221 (771)
.+..|.+ ++..|-+|+. |+..+.+.+- ..|+.........+..+..-.-.....| +...-+.+.-+..-+
T Consensus 142 ~gHtgyl------ScC~f~dD~~-ilT~SGD~TC--alWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 142 AGHTGYL------SCCRFLDDNH-ILTGSGDMTC--ALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred cCcccee------EEEEEcCCCc-eEecCCCceE--EEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 1222222 6788888775 6665544321 1344333333333334444344445555 433334455577889
Q ss_pred EEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhc
Q 004149 222 VININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKE 301 (771)
Q Consensus 222 v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 301 (771)
+||+..+..++.- ...+..+..+.|-|+|.. ++..+. +..+++|-+.
T Consensus 213 lWD~R~~~c~qtF-~ghesDINsv~ffP~G~a----fatGSD-------------D~tcRlyDlR--------------- 259 (343)
T KOG0286|consen 213 LWDVRSGQCVQTF-EGHESDINSVRFFPSGDA----FATGSD-------------DATCRLYDLR--------------- 259 (343)
T ss_pred eeeccCcceeEee-cccccccceEEEccCCCe----eeecCC-------------CceeEEEeec---------------
Confidence 9999888766651 334557889999999987 665552 1223455444
Q ss_pred CCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccC
Q 004149 302 SSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 379 (771)
Q Consensus 302 ~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 379 (771)
...++...... ...+.++.||..|+.| |....+ ....+||.-.++..-+..+.
T Consensus 260 ---aD~~~a~ys~~~~~~gitSv~FS~SGRlL-fagy~d----------~~c~vWDtlk~e~vg~L~GH----------- 314 (343)
T KOG0286|consen 260 ---ADQELAVYSHDSIICGITSVAFSKSGRLL-FAGYDD----------FTCNVWDTLKGERVGVLAGH----------- 314 (343)
T ss_pred ---CCcEEeeeccCcccCCceeEEEcccccEE-EeeecC----------CceeEeeccccceEEEeecc-----------
Confidence 22333333322 3358899999999955 554332 45778885444432221111
Q ss_pred CCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 380 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 380 ~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
...+.-+..+|||- .+.+.+|+...+||
T Consensus 315 --------eNRvScl~~s~DG~-av~TgSWDs~lriW 342 (343)
T KOG0286|consen 315 --------ENRVSCLGVSPDGM-AVATGSWDSTLRIW 342 (343)
T ss_pred --------CCeeEEEEECCCCc-EEEecchhHheeec
Confidence 12345667899996 55788888888777
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-06 Score=93.10 Aligned_cols=242 Identities=16% Similarity=0.165 Sum_probs=144.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+..+.|+|+|+.||.....+ .+.+|+..+.+++........+.| ++++|. +..+...+......
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rv------g~laW~--~~~lssGsr~~~I~- 283 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRV------GSLAWN--SSVLSSGSRDGKIL- 283 (484)
T ss_pred CceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCcee------EEEecc--CceEEEecCCCcEE-
Confidence 5688999999999999876544 667775544444444322222233 788888 33333333222110
Q ss_pred CCccCCCCCC-CCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCcc
Q 004149 179 PTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.++.-.... ......+..-.-...|++|......+..++.+++||....+ ...+ +.....+..++|+|=-+.
T Consensus 284 -~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--~~H~aAVKA~awcP~q~~--- 357 (484)
T KOG0305|consen 284 -NHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--TEHTAAVKALAWCPWQSG--- 357 (484)
T ss_pred -EEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--eccceeeeEeeeCCCccC---
Confidence 000000000 00011122222234588887777788888999999984443 3444 556667888999998887
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+.++-.. .+..|..+|. .++...+.......+.+..||+..+.|+....
T Consensus 358 -lLAsGGGs------------~D~~i~fwn~-----------------~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 358 -LLATGGGS------------ADRCIKFWNT-----------------NTGARIDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred -ceEEcCCC------------cccEEEEEEc-----------------CCCcEecccccCCceeeEEEcCCCCEEEEecC
Confidence 77766221 2236888887 77777766677778999999999999887663
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
-. ..+|.+|...+-.......+ +...+..++|||||.+|+. ...+.+.++|
T Consensus 408 ~s---------~n~i~lw~~ps~~~~~~l~g-------------------H~~RVl~la~SPdg~~i~t-~a~DETlrfw 458 (484)
T KOG0305|consen 408 YS---------ENQITLWKYPSMKLVAELLG-------------------HTSRVLYLALSPDGETIVT-GAADETLRFW 458 (484)
T ss_pred CC---------CCcEEEEeccccceeeeecC-------------------CcceeEEEEECCCCCEEEE-ecccCcEEec
Confidence 32 34666666665222111111 1112456789999997754 4445566666
Q ss_pred EEE
Q 004149 417 SVN 419 (771)
Q Consensus 417 ~~d 419 (771)
.+-
T Consensus 459 ~~f 461 (484)
T KOG0305|consen 459 NLF 461 (484)
T ss_pred ccc
Confidence 543
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-07 Score=95.49 Aligned_cols=70 Identities=9% Similarity=-0.007 Sum_probs=56.3
Q ss_pred ccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCcc--CCCCCChHHHHHHHHHHHHHH
Q 004149 700 ISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 700 ~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+.+|+ +|+|.+.|+.|.++|+.++..+.+.+...+. +.+.++.+++||. +.....+.+.+..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 56788 9999999999999999999999887643322 3456777789996 455677788999999999864
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-06 Score=86.94 Aligned_cols=265 Identities=13% Similarity=0.103 Sum_probs=149.8
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++.||..||+ +...+++.+|+. .+... ..|....+.+....|+.+|.+|+-..-.+ ..+
T Consensus 243 Wn~~G~~Lat---------G~~~G~~riw~~--~G~l~-----~tl~~HkgPI~slKWnk~G~yilS~~vD~-----tti 301 (524)
T KOG0273|consen 243 WNNDGTLLAT---------GSEDGEARIWNK--DGNLI-----STLGQHKGPIFSLKWNKKGTYILSGGVDG-----TTI 301 (524)
T ss_pred ecCCCCeEEE---------eecCcEEEEEec--Cchhh-----hhhhccCCceEEEEEcCCCCEEEeccCCc-----cEE
Confidence 3445555555 445667777664 33222 22333447799999999999998654332 455
Q ss_pred Eec--CCcceEEEecCCcccccc--cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 129 LWS--QSQLEKEFHVPQTVHGSV--YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~g~~--~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+|+ .+...+.+.+.....-+| -.+.. -..=++||..-+|--..+.+. .....+........|
T Consensus 302 lwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~------------~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPV------------KTFIGHHGEVNALKW 367 (524)
T ss_pred EEeccCceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCCCcc------------eeeecccCceEEEEE
Confidence 663 355555544422221111 00111 223456665544433222221 122223344445557
Q ss_pred cCCcCcccCCccCceEEEEEccC-CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004149 205 EEDWGETYAGKRQPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
.+...-+++...+..|-+|.... +....+ -.....+-.+.|||+|.. ..+......+- ....++.+-
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v-------~~n~~~~~~l~---sas~dstV~ 435 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPV-------TSNPNMNLMLA---SASFDSTVK 435 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCc-------cCCCcCCceEE---EeecCCeEE
Confidence 76655555556678888998543 344445 334446778899999874 11111111111 122345677
Q ss_pred EEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 284 AVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
.+|+ ..+ ....|+.+...+.+++|||||++||+.+.+. .+++|+.++++..
T Consensus 436 lwdv-----------------~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg-----------~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 436 LWDV-----------------ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG-----------CVHIWSTKTGKLV 487 (524)
T ss_pred EEEc-----------------cCCceeEeeccCCCceEEEEecCCCcEEEecCCCC-----------eeEeccccchhee
Confidence 7887 444 4566778888899999999999999887664 3778887776653
Q ss_pred CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 363 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
+-..+. .++..++|+.+|..|....+
T Consensus 488 ~s~~~~--------------------~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 488 KSYQGT--------------------GGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred EeecCC--------------------CeEEEEEEcCCCCEEEEEec
Confidence 221111 13467899999987765544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=91.17 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=144.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+..+.|.|+|++|+..+..+ -|.+|.+....-.+- ...| |..+....||++|.+++......-.+
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEti--lQaH-----Ds~Vr~m~ws~~g~wmiSgD~gG~iK-- 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFETI--LQAH-----DSPVRTMKWSHNGTWMISGDKGGMIK-- 163 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHHH--hhhh-----cccceeEEEccCCCEEEEcCCCceEE--
Confidence 478899999999998876554 588886522111110 1112 22347999999999987754443322
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
+|......-.....-+..-+....|++.-..-+.-..++.|-+||....+...+. ......+..+.|.|.- . |+
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~k-g----Li 237 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTK-G----LI 237 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCcc-c----ee
Confidence 4432111100000001112223445554344444455689999998766554431 4556678899999974 4 66
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+++- .+.-+-.+|. .+++ +-.|..+...+....|+|+|.+|+..+.+.
T Consensus 238 asgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 238 ASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 6652 2224667776 5554 345667778899999999999999888764
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+.++|+.+-+..+...+. ..-+....|+|=...|+.+...++....|.+
T Consensus 287 -----------~~kv~DiR~mkEl~~~r~H-------------------kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 287 -----------SCKVFDIRTMKELFTYRGH-------------------KKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred -----------eEEEEehhHhHHHHHhhcc-------------------hhhheeeccccccccceeeccCCCceEEEec
Confidence 3667777632221111100 0124567899988888887777777777766
Q ss_pred E
Q 004149 419 N 419 (771)
Q Consensus 419 d 419 (771)
+
T Consensus 337 ~ 337 (464)
T KOG0284|consen 337 G 337 (464)
T ss_pred c
Confidence 6
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-06 Score=98.66 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh-------hcCCC------------Cccccc
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-------QSLPG------------KVGSQD 596 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~-------~~~~~------------~~~~~~ 596 (771)
..|+||++||.... ...|...+..|+++||.|+++|+||.+....... ..... ....+.
T Consensus 448 g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 46899999996654 3467788889999999999999999544311100 00000 011233
Q ss_pred hhhHHHHHHHHH------Hc----CCCCCCeEEEEEcChhHHHHHHHHHh
Q 004149 597 VNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 597 ~~D~~~~i~~l~------~~----~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
+.|+......+. +. ...+..++.++||||||.++..++..
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 566666666554 11 12456799999999999999999875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-06 Score=82.38 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=117.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCcccccccCC---CcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~wSpDg~~la~~~~ 172 (771)
.++...+|-|-+..-+.+.-+. =+.+| ......+.+......++.+.-+ ..+....|.+||..++-.+.
T Consensus 141 rnvtclawRPlsaselavgCr~-----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRA-----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeecc-----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc
Confidence 4688899999877654444332 24455 2223333222222223333221 24478999999998887643
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLN 251 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg 251 (771)
+...|.+||+++|.-++| .+. -.++.-..|||||
T Consensus 216 -------------------------------------------gsssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 216 -------------------------------------------GSSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDG 250 (445)
T ss_pred -------------------------------------------CcceEEEEcCCCCCcccc--cccCCCceeeEEEcCCC
Confidence 337899999999998888 433 3355677999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEE
Q 004149 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.. |...+ .+. .-.||... .+-...+-.-..+.+....|||+|+.|
T Consensus 251 d~----lfaAt-~da------------vfrlw~e~------------------q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 251 DV----LFAAT-CDA------------VFRLWQEN------------------QSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred CE----EEEec-ccc------------eeeeehhc------------------ccceecceeccCCceeeeeecCCCCEE
Confidence 95 44433 111 11344222 122222222234478889999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCC-ccceeeEEeccccc---CCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCA---EGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~---~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
.|..... ..||............ ..+...+..+.+.+ .... ..+-+.....++|-|-|.+|++.-
T Consensus 296 Lf~~sgs----------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag-~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 296 LFACSGS----------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG-QRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred EEEEcCC----------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC-cccccCccceeeECCCCCEEEEEE
Confidence 9988654 3466655443222111 11111111111111 0000 112233456788999998887665
Q ss_pred e
Q 004149 408 I 408 (771)
Q Consensus 408 ~ 408 (771)
-
T Consensus 365 K 365 (445)
T KOG2139|consen 365 K 365 (445)
T ss_pred c
Confidence 4
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.9e-06 Score=77.34 Aligned_cols=150 Identities=16% Similarity=0.216 Sum_probs=92.1
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEec-C-CcceEE-EecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS-Q-SQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
+.+...+|+|- |..||--+.. .-+.+|. . +..-.. +.+....... +..++|||+|+.||..+.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrs------VRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRS------VRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchhe------eeeeeecCCCcEEEEeeccc
Confidence 46888999997 7756543322 2566663 2 222222 2222222212 37999999999999887653
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC-CCCCccceEEEecCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~-~~~~~~~~~~wspDg~~ 253 (771)
...+|.-..++...+.-+ ..+..+..++||++|..
T Consensus 84 --------------------------------------------t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~ 119 (312)
T KOG0645|consen 84 --------------------------------------------TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY 119 (312)
T ss_pred --------------------------------------------eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE
Confidence 233333333333322111 22345778999999998
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~ 330 (771)
|+..+ |...+|++.++ ++.+. -.|.++...+....|.|.-.-
T Consensus 120 ----LATCS---------------RDKSVWiWe~d----------------eddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 120 ----LATCS---------------RDKSVWIWEID----------------EDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred ----EEEee---------------CCCeEEEEEec----------------CCCcEEEEeeeccccccccEEEEcCCcce
Confidence 98877 55578888873 33443 456667777889999998776
Q ss_pred EEEEecCC
Q 004149 331 LVFLSAKS 338 (771)
Q Consensus 331 l~f~~~~~ 338 (771)
|+-.+.++
T Consensus 165 L~S~SYDn 172 (312)
T KOG0645|consen 165 LFSCSYDN 172 (312)
T ss_pred eEEeccCC
Confidence 76666654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-07 Score=100.35 Aligned_cols=194 Identities=16% Similarity=0.094 Sum_probs=123.5
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
..+.+||||.+.|+-.+++...+ .|+.......-....+......+.|.|.+=.-.++..+.+-.+|..+...+.++
T Consensus 454 Vyg~sFsPd~rfLlScSED~svR--LWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi- 530 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVR--LWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI- 530 (707)
T ss_pred eeeeeecccccceeeccCCccee--eeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh-
Confidence 36889999999999999887765 454333322222223333334445666532222334455556676666666666
Q ss_pred CCCCCC-ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC
Q 004149 235 GIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 313 (771)
Q Consensus 235 ~~~~~~-~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt 313 (771)
..+.. .+.-+.|.|++.+ ++..+ ..+ .+..+|+. .+...+..+
T Consensus 531 -faghlsDV~cv~FHPNs~Y----~aTGS-------------sD~--tVRlWDv~----------------~G~~VRiF~ 574 (707)
T KOG0263|consen 531 -FAGHLSDVDCVSFHPNSNY----VATGS-------------SDR--TVRLWDVS----------------TGNSVRIFT 574 (707)
T ss_pred -hcccccccceEEECCcccc----cccCC-------------CCc--eEEEEEcC----------------CCcEEEEec
Confidence 34433 4556899999986 66544 112 45566651 445566677
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+.+.+.+.+|||+|++|+-.+.+ ..|.+||+.++.......+. ...+.+
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed-----------~~I~iWDl~~~~~v~~l~~H-------------------t~ti~S 624 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDED-----------GLIKIWDLANGSLVKQLKGH-------------------TGTIYS 624 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccC-----------CcEEEEEcCCCcchhhhhcc-------------------cCceeE
Confidence 788889999999999999876655 35899999887653221111 124578
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEE
Q 004149 394 NPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
+.||.||. ++++...++..++|-+
T Consensus 625 lsFS~dg~-vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 625 LSFSRDGN-VLASGGADNSVRLWDL 648 (707)
T ss_pred EEEecCCC-EEEecCCCCeEEEEEc
Confidence 89999998 5566666777778733
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-06 Score=79.39 Aligned_cols=209 Identities=12% Similarity=0.048 Sum_probs=115.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecCCccccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGS 148 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 148 (771)
..+.+.+|++... +.+.-+... ++....+|||||+++++..+.+ .+-.++... +...........
T Consensus 85 ~dk~ir~wd~r~~--k~~~~i~~~-----~eni~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~~~~~~~e~--- 150 (313)
T KOG1407|consen 85 GDKTIRIWDIRSG--KCTARIETK-----GENINITWSPDGEYIAVGNKDD----RITFIDARTYKIVNEEQFKFEV--- 150 (313)
T ss_pred CCceEEEEEeccC--cEEEEeecc-----CcceEEEEcCCCCEEEEecCcc----cEEEEEecccceeehhccccee---
Confidence 4456666666433 333222222 4577899999999999875443 243444222 111111222222
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004149 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
..++|+-++. +.|....- +.-+|.-+. .-.
T Consensus 151 -------ne~~w~~~nd-~Fflt~Gl-----------------------------------------G~v~ILsyp-sLk 180 (313)
T KOG1407|consen 151 -------NEISWNNSND-LFFLTNGL-----------------------------------------GCVEILSYP-SLK 180 (313)
T ss_pred -------eeeeecCCCC-EEEEecCC-----------------------------------------ceEEEEecc-ccc
Confidence 3778886664 66653321 112333332 111
Q ss_pred ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004149 229 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
.+..| .......--+.|+|||++ ++..+. +..+-++|++ +--=
T Consensus 181 pv~si--~AH~snCicI~f~p~Gry----fA~GsA---------------DAlvSLWD~~----------------ELiC 223 (313)
T KOG1407|consen 181 PVQSI--KAHPSNCICIEFDPDGRY----FATGSA---------------DALVSLWDVD----------------ELIC 223 (313)
T ss_pred ccccc--ccCCcceEEEEECCCCce----Eeeccc---------------cceeeccChh----------------Hhhh
Confidence 12223 222333445789999999 887662 1234455551 1122
Q ss_pred ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004149 309 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 309 ~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
.+.++.....++..+||-||++||-.+.+. -|-+.++++|.. +.+ .+...
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh-----------~IDIA~vetGd~---------~~e---I~~~~------- 273 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASEDH-----------FIDIAEVETGDR---------VWE---IPCEG------- 273 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCccc-----------eEEeEecccCCe---------EEE---eeccC-------
Confidence 466777788899999999999999877653 255566666553 111 11111
Q ss_pred CCCCCCccccCCCEEEEEeeeC
Q 004149 389 SSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 389 ~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
....++|.|.-..|.|+.+..
T Consensus 274 -~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 274 -PTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred -CceeEEecCCCceeeEEecCC
Confidence 235789999988777776643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-06 Score=90.73 Aligned_cols=271 Identities=14% Similarity=0.123 Sum_probs=163.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
-+.....|| ....+|..... .+|+-. ..+....+.+... +.+.++.|+++|++||.........
T Consensus 178 fY~nlldWs-s~n~laValg~-----~vylW~~~s~~v~~l~~~~~---------~~vtSv~ws~~G~~LavG~~~g~v~ 242 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQ-----SVYLWSASSGSVTELCSFGE---------ELVTSVKWSPDGSHLAVGTSDGTVQ 242 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecc-----eEEEEecCCCceEEeEecCC---------CceEEEEECCCCCEEEEeecCCeEE
Confidence 345667899 44456654332 245433 4556566666521 1226999999999999987665432
Q ss_pred CCCccCCCCCCCCCCcc-CCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKD-CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.|+............ +....+...|.. .....+.+...|...|+...+...-.-....-.+....|++|++.
T Consensus 243 --iwD~~~~k~~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--- 315 (484)
T KOG0305|consen 243 --IWDVKEQKKTRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--- 315 (484)
T ss_pred --EEehhhccccccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe---
Confidence 344332222222222 444445555552 244456677888888886654211110233446778999999998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++-.++ +..++++|.. .......++.+...+...+|+|=-+-|+-+..
T Consensus 316 -lASGgn---------------DN~~~Iwd~~----------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 316 -LASGGN---------------DNVVFIWDGL----------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred -eccCCC---------------ccceEeccCC----------------CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 776652 2367777751 44566788888999999999997665554432
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVI 415 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~l 415 (771)
. .....|..||..++....... .+..+-++.||+..+.|+.+... .+...|
T Consensus 364 G--------s~D~~i~fwn~~~g~~i~~vd--------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 364 G--------SADRCIKFWNTNTGARIDSVD--------------------TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred C--------CcccEEEEEEcCCCcEecccc--------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 2 345789999988776532211 11235688999999988766543 344567
Q ss_pred EEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 416 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
|.+.. -..+..+.....-+....+||||..++..+.
T Consensus 416 w~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 416 WKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred Eeccc-cceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 77653 1233344444444555677888877765553
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-07 Score=90.81 Aligned_cols=168 Identities=19% Similarity=0.189 Sum_probs=81.6
Q ss_pred CCcEEEEEcCCCCCCCCCcchH----HHHHHHHCCcEEEEECCCCCC--CCChh---------hh-hcCCCCccc-----
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSK----SLAFLSSVGYSLLIVNYRGSL--GFGEE---------AL-QSLPGKVGS----- 594 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~----~~~~la~~G~~V~~~d~rG~~--~~g~~---------~~-~~~~~~~~~----- 594 (771)
+++-|+++||.+.+. ..+.. +...|.+.++..+.+|-+-.. +.+-. .. ......|..
T Consensus 3 ~k~riLcLHG~~~na--~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQNA--EIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT--H--HHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcCH--HHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 457799999976552 33333 333444448998888854211 00000 00 001111111
Q ss_pred cchhhHHHHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCccchhhhhcCCCC
Q 004149 595 QDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDI 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~~~~~~~~~~~~ 662 (771)
....++..+++++.+ ++. -.+|+|+|.||.+|+.++... ...++.+|+.+++......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 124455555555543 332 358999999999999888632 2247888888876421100
Q ss_pred CcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 663 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
........+|++|+|.++|++|.+++++.++.+++.+... .+++.+
T Consensus 151 -------------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h 196 (212)
T PF03959_consen 151 -------------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEH 196 (212)
T ss_dssp -------------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEE
T ss_pred -------------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEE
Confidence 0000123457899999999999999999999999999874 567677
Q ss_pred CCCCccCC
Q 004149 743 PNDVHGIE 750 (771)
Q Consensus 743 ~~~~H~~~ 750 (771)
+ +||.+.
T Consensus 197 ~-gGH~vP 203 (212)
T PF03959_consen 197 D-GGHHVP 203 (212)
T ss_dssp S-SSSS--
T ss_pred C-CCCcCc
Confidence 5 588775
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-06 Score=78.83 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC--C------CceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p------~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+....+|+.+++..| +|+|+|.|+.++.++++.. . ..|+.+|+.+++.....
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 344456777787776 7999999999999998721 1 13677888777642100
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
. . . -..+...+++|.|-+.|+.|.++|...+..|++.+.+. .++.. .+||.+..
T Consensus 152 -----------~--~--~------~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~H-pggH~VP~ 205 (230)
T KOG2551|consen 152 -----------K--L--D------ESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEH-PGGHIVPN 205 (230)
T ss_pred -----------h--h--h------hhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEec-CCCccCCC
Confidence 0 0 0 01234467899999999999999999999999998874 44455 45898753
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 004149 752 PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 752 ~~~~~~~~~~i~~wl~~~l 770 (771)
.. ...+.+.+||...+
T Consensus 206 ~~---~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 206 KA---KYKEKIADFIQSFL 221 (230)
T ss_pred ch---HHHHHHHHHHHHHH
Confidence 33 67788899987654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.5e-07 Score=86.16 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=90.0
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.-.|||+|++||..++.. +.+.+. .=+..++..+-..+ .-+.|+.|.-+|+.++..
T Consensus 13 ~c~fSp~g~yiAs~~~yr-----lviRd~~tlq~~qlf~cldki----------~yieW~ads~~ilC~~yk-------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYR-----LVIRDSETLQLHQLFLCLDKI----------VYIEWKADSCHILCVAYK-------- 69 (447)
T ss_pred ceeECCCCCeeeeeeeeE-----EEEeccchhhHHHHHHHHHHh----------hheeeeccceeeeeeeec--------
Confidence 457999999999875432 333221 11222222221222 478899999999987543
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 261 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~ 261 (771)
++.+.+|++...+..--. -.+..+.....|||||+. |+..
T Consensus 70 -----------------------------------~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrh----iL~t 109 (447)
T KOG4497|consen 70 -----------------------------------DPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRH----ILLT 109 (447)
T ss_pred -----------------------------------cceEEEEEeecceeEEEe-ccCCCcceeeeECCCcce----Eeee
Confidence 367888998766654331 234456778899999998 8877
Q ss_pred eecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 262 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+. + . .+|-++.+ .+.....+..........+|.|||+..+..++++
T Consensus 110 se----F--------~--lriTVWSL-----------------~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 110 SE----F--------D--LRITVWSL-----------------NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ec----c--------e--eEEEEEEe-----------------ccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 62 1 1 23444444 4444444444444557789999999998888775
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.6e-06 Score=96.08 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=132.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc------c--eEEEecCCcccccccCCCcccceeecCC-CCeEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ------L--EKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~ 169 (771)
+.+...+|+|||+.+|.....+ .+.+|+... . ..+.... ....+..+.|+|. ++.|+.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA--------SRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec--------ccCceeeEEeccCCCCEEEE
Confidence 4578899999999998765433 455563111 0 0011111 0112368899885 667776
Q ss_pred EecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEe
Q 004149 170 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws 248 (771)
.+.+...+ .|+............+......+.|.+ +....+++..+..|.+||+.++..... ......+..+.|+
T Consensus 551 ~~~Dg~v~--lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQ--VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--IKTKANICCVQFP 626 (793)
T ss_pred EeCCCeEE--EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--EecCCCeEEEEEe
Confidence 66554332 344322222222233444444566765 433455666778999999988765433 2223356677885
Q ss_pred -cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceecCCCCccccceeec
Q 004149 249 -PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFS 325 (771)
Q Consensus 249 -pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~S 325 (771)
++|.. |++.+ .+..|+++|+ .... ...+..+...+....|+
T Consensus 627 ~~~g~~----latgs---------------~dg~I~iwD~-----------------~~~~~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 627 SESGRS----LAFGS---------------ADHKVYYYDL-----------------RNPKLPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred CCCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCCccceEecCCCCCEEEEEEe
Confidence 56776 66654 2347888887 3322 34455566667888897
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
|++.|+..+.+. .|.+||+..+... ... ..+.. |.| +...+..++|+++++.| +
T Consensus 671 -~~~~lvs~s~D~-----------~ikiWd~~~~~~~-~~~---~~l~~--------~~g-h~~~i~~v~~s~~~~~l-a 724 (793)
T PLN00181 671 -DSSTLVSSSTDN-----------TLKLWDLSMSISG-INE---TPLHS--------FMG-HTNVKNFVGLSVSDGYI-A 724 (793)
T ss_pred -CCCEEEEEECCC-----------EEEEEeCCCCccc-cCC---cceEE--------EcC-CCCCeeEEEEcCCCCEE-E
Confidence 788877666542 4788887643210 000 00000 111 01123456799999854 5
Q ss_pred EeeeCCeeEEEE
Q 004149 406 SSIWGSSQVIIS 417 (771)
Q Consensus 406 ~~~~~~~~~l~~ 417 (771)
+.+.++...+|.
T Consensus 725 sgs~D~~v~iw~ 736 (793)
T PLN00181 725 TGSETNEVFVYH 736 (793)
T ss_pred EEeCCCEEEEEE
Confidence 555566655654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-05 Score=78.17 Aligned_cols=236 Identities=16% Similarity=0.187 Sum_probs=135.0
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeec-CCCCeEEEEecCCCCCCCCc
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wS-pDg~~la~~~~~~~~~~~~~ 181 (771)
.|+|.+....|.|+.-. ..+++.++..+....++..+. . .+..+. +||+ |++...
T Consensus 4 gp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g~-l~v~~~--------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDGR-LYVADS--------- 59 (246)
T ss_dssp EEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEEESSS-E----------EEEEEECTTSE-EEEEET---------
T ss_pred ceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEEEecCC-C----------ceEEEEccCCE-EEEEEc---------
Confidence 68999977777776432 357888885555555555544 2 366777 6754 444321
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC----CCCccceEEEecCCCCCccE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----KSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~----~~~~~~~~~wspDg~~~~~~ 257 (771)
..+.++|+.+++++.+...+ .......+++.|||+
T Consensus 60 ------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~----- 98 (246)
T PF08450_consen 60 ------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN----- 98 (246)
T ss_dssp ------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS------
T ss_pred ------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-----
Confidence 34456688888877763111 234567889999997
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+|+........ ......||+++. . ++.+.+...........|||||+.|++....
T Consensus 99 ly~t~~~~~~~~------~~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 99 LYVTDSGGGGAS------GIDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEEEECCBCTT------CGGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred EEEEecCCCccc------cccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeecccc
Confidence 777653221100 000157999996 4 5666665555556789999999998876654
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .+|+++++...... +. ....+.. ......+ ...+++..+|+ |+++.. +...|++
T Consensus 155 ~----------~~i~~~~~~~~~~~-~~-~~~~~~~---~~~~~g~-------pDG~~vD~~G~-l~va~~--~~~~I~~ 209 (246)
T PF08450_consen 155 N----------GRIWRFDLDADGGE-LS-NRRVFID---FPGGPGY-------PDGLAVDSDGN-LWVADW--GGGRIVV 209 (246)
T ss_dssp T----------TEEEEEEEETTTCC-EE-EEEEEEE----SSSSCE-------EEEEEEBTTS--EEEEEE--TTTEEEE
T ss_pred c----------ceeEEEeccccccc-ee-eeeeEEE---cCCCCcC-------CCcceEcCCCC-EEEEEc--CCCEEEE
Confidence 3 56999998654321 10 0000111 1000001 23567777886 555433 3457888
Q ss_pred EECCCCcEEEecCCCCCceeeEEe-ecCCEEEEEEe
Q 004149 418 VNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSS 452 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~~~~~~~~s-~d~~~l~~~~s 452 (771)
++.++..+..+..+........|. ++.+.|+.+.+
T Consensus 210 ~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 210 FDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 898733344455443345556674 56777877654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=89.22 Aligned_cols=245 Identities=15% Similarity=0.123 Sum_probs=132.5
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC-----CChhhhh----cCC
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-----FGEEALQ----SLP 589 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~-----~g~~~~~----~~~ 589 (771)
..+.+.++.|+.....++.|.+++.||...... ........++..++.++..+....++ .|..... ...
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKE--QSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCcccccc--CcchHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 567888888885444478999999999665532 22226677888999988887511100 0100000 000
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCccchhhhhcCCC----C
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGTTD----I 662 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~~~~~----~ 662 (771)
.........++...-..+ .....++....|.+.|+..+..++...+. ..+.++...+.-.......... .
T Consensus 109 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~ 185 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRL---LGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELA 185 (299)
T ss_pred hhheeeeccccccHHHHH---HhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHH
Confidence 000000011111110001 11223677888888888888877766542 2222222221111000000000 0
Q ss_pred C---cchhhhh-ccCC-CCCcCCCCCChhhHHHHhhcCccccccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004149 663 P---DWCYVES-YGSK-GKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 663 ~---~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
. +...... +... ............ ...+...++...+.++. .|+|++||..|..||..++..++...+.. +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~ 262 (299)
T COG1073 186 RELIDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--P 262 (299)
T ss_pred HhhhhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--C
Confidence 0 0000000 0000 000000111111 23355666677777777 69999999999999999999999998875 6
Q ss_pred EEEEEeCCCCccCCCCCCh--HHHHHHHHHHHHHHhC
Q 004149 737 TKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 771 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~--~~~~~~i~~wl~~~l~ 771 (771)
.+.+.+++++|........ .+.+..+.+||.++|.
T Consensus 263 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l~ 299 (299)
T COG1073 263 KKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHLL 299 (299)
T ss_pred ceEEEecCCccccccCccHHHHHHHHHHHHHHHHhcC
Confidence 7888899999987743333 4789999999999874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=87.12 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=137.7
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.+++...|.| .|..|+ +..-++.-.+|.+++.+...+.... ...+ ..++||+||..++..+.+
T Consensus 215 kgvsai~~fp~~~hLlL--S~gmD~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLL--SGGMDGLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred cccchhhhccceeeEEE--ecCCCceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeecc---
Confidence 5688899999 555443 3332355567777754444333322 2222 689999999999887544
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|-+||+++|++..- ...+..+.-+.+.||+..
T Consensus 280 -----------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~n--- 313 (503)
T KOG0282|consen 280 -----------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQN--- 313 (503)
T ss_pred -----------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCCc---
Confidence 4678899999987665 344455677889999977
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
+++++- .+..|..+|+ .+++..+- -.+.+.+....|=++|++++..+
T Consensus 314 -~fl~G~--------------sd~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 314 -IFLVGG--------------SDKKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred -EEEEec--------------CCCcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 877762 3347999998 66665443 23456788899999999877766
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCcc----------------------cee------eEEecccccCCCCCcccc
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLE----------------------KIV------DVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~----------------------~~~------~~~~~~~~~~~~~f~g~~ 387 (771)
.+. .+.+|++...-...... ..+ .+.+.....+...|.|..
T Consensus 362 Ddk-----------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 362 DDK-----------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred cCc-----------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 553 24455544433221100 000 112222233344566655
Q ss_pred cCCC-CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 388 SSSI-LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 388 ~~~~-~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
..+. -.+.|||||++| ++.+ +...+|.+|.+|-++...
T Consensus 431 vaGys~~v~fSpDG~~l-~SGd--sdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTL-CSGD--SDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred ccCceeeEEEcCCCCeE-Eeec--CCccEEEeechhhhhhhc
Confidence 5444 367899999966 4444 444566667666554433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-05 Score=88.70 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=119.9
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--ee
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QA 232 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~ 232 (771)
+..+.|||||++|+|..+.. +....+|+++|+.+|+. ..
T Consensus 129 l~~~~~Spdg~~la~~~d~~---------------------------------------G~E~~~l~v~d~~tg~~l~~~ 169 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFL---------------------------------------SRRQYGIRFRNLETGNWYPEL 169 (686)
T ss_pred EeEEEECCCCCEEEEEecCC---------------------------------------CcEEEEEEEEECCCCCCCCcc
Confidence 35789999999999985543 22457999999998873 33
Q ss_pred ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cce
Q 004149 233 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV 310 (771)
Q Consensus 233 l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 310 (771)
+ +. . ...++|++||+. |+|+..... ..++.+||++++ .++ +.+
T Consensus 170 i---~~-~-~~~~~w~~D~~~----~~y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~ 214 (686)
T PRK10115 170 L---DN-V-EPSFVWANDSWT----FYYVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDE 214 (686)
T ss_pred c---cC-c-ceEEEEeeCCCE----EEEEEecCC---------CCCCCEEEEEEC-----------------CCChhHCe
Confidence 3 11 1 245899999999 999886321 114468999998 555 334
Q ss_pred ecCCCC-cccc-ceeecCCCCEEEEEecCCCCCCCCccccccceeeec--CCCCCCCCccceeeEEecccccCCCCCccc
Q 004149 311 NLTESI-SSAF-FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--PTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 311 ~lt~~~-~~~~-~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
.|.... .... +...+.||++++..+... ..+.+++++. .+++.+.+. ....+..
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~---- 272 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFVFL----------PRRKDHE---- 272 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceEEE----------ECCCCCE----
Confidence 444332 2122 334455999987555443 2356777774 232221111 1111110
Q ss_pred ccCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECC-CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 387 YSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 387 ~~~~~~~~~~s~dg~~l~~~~~~~-~~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
| .....+..+++.++.+ ....|+.+++. .++.+.+...........+...++.|++....... +++++++
T Consensus 273 ~-------~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~-~~l~~~~ 344 (686)
T PRK10115 273 Y-------SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL-TSLRQIN 344 (686)
T ss_pred E-------EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCE-EEEEEEc
Confidence 1 1112235677777653 45578888887 46666666553322333455557777777654444 3366665
Q ss_pred e
Q 004149 465 F 465 (771)
Q Consensus 465 ~ 465 (771)
.
T Consensus 345 ~ 345 (686)
T PRK10115 345 R 345 (686)
T ss_pred C
Confidence 4
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-05 Score=79.95 Aligned_cols=250 Identities=13% Similarity=0.162 Sum_probs=141.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
+..+.|||-|.+|+..-..+ +.+|-+..-.++-.. ..++ ..+.|||++++|+.-+..+...
T Consensus 213 etyv~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp~V----------q~idfSP~EkYLVT~s~~p~~~-- 274 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHPGV----------QFIDFSPNEKYLVTYSPEPIIV-- 274 (698)
T ss_pred eeeEEecCCceEEEEEeccc------eeeecCccHHHHHhccCCCc----------eeeecCCccceEEEecCCcccc--
Confidence 66799999999998776655 567755433333222 1233 4788999999998765443211
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCc--cceEEEecCCCCCccE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS--VGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~--~~~~~wspDg~~~~~~ 257 (771)
+|+ .....+|++||+.+|...+--.+..... -.-+.||.|+|.
T Consensus 275 ---------------------------~~~----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy---- 319 (698)
T KOG2314|consen 275 ---------------------------EED----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY---- 319 (698)
T ss_pred ---------------------------Ccc----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce----
Confidence 011 1134799999999998766521221221 124689999998
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++-+.- ..|.+++.+ +-. +..-+-....+....|||-+.-|||-..
T Consensus 320 ~Arm~~----------------~sisIyEtp-----------------sf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 320 FARMTG----------------NSISIYETP-----------------SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred eEEecc----------------ceEEEEecC-----------------ceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 776541 134444321 000 0000112234778999999999999887
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS----- 411 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~----- 411 (771)
... +...++-++.+.++...+. . .+..+ +.-.+-|-.+|++|.+...+..
T Consensus 367 e~~------~~parvtL~evPs~~~iRt-~---nlfnV---------------sDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 367 ETN------NIPARVTLMEVPSKREIRT-K---NLFNV---------------SDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred ccc------CCcceEEEEecCccceeee-c---cceee---------------eccEEEeccCCcEEEEEEEeecccccc
Confidence 652 2234566666666554221 0 11111 1224569999999988876432
Q ss_pred ----eeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE-eCCCCCCeEEE
Q 004149 412 ----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS-SSPVDVPQVKY 462 (771)
Q Consensus 412 ----~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~-s~~~~p~~l~~ 462 (771)
+..|++++-+.=-+..+.-.. .+-..+|.|.|+.++.+. .......++|-
T Consensus 422 g~f~n~eIfrireKdIpve~velke-~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 422 GQFSNLEIFRIREKDIPVEVVELKE-SVIAFAWEPHGDKFAVISGNTVKNTVSFYA 476 (698)
T ss_pred ceEeeEEEEEeeccCCCceeeecch-heeeeeeccCCCeEEEEEccccccceeEEE
Confidence 224666654332233332222 233457889998876554 33333333443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-05 Score=77.07 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=127.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+.+|+...+|.-. +++...+|.+..+...-.++-....+ .+..||.||..||...
T Consensus 65 ~svFavsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSV----------t~~~FshdgtlLATGd------- 125 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSV----------TCCSFSHDGTLLATGD------- 125 (399)
T ss_pred CceEEEEeCCCCceEEecC--CCceEEEEEccCCcceeEecCCCCce----------EEEEEccCceEEEecC-------
Confidence 5688899999766665422 22333444444333222333222222 6899999999888731
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~ 257 (771)
-...|.++...+|..+.. +. .-..+.-..|.|-+.-
T Consensus 126 -------------------------------------msG~v~v~~~stg~~~~~--~~~e~~dieWl~WHp~a~i---- 162 (399)
T KOG0296|consen 126 -------------------------------------MSGKVLVFKVSTGGEQWK--LDQEVEDIEWLKWHPRAHI---- 162 (399)
T ss_pred -------------------------------------CCccEEEEEcccCceEEE--eecccCceEEEEecccccE----
Confidence 346789999988877665 33 2234567789998774
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|++.+ ..+.||.+.++ +.+..+.+..+...+..=.|.||||+|+-...+
T Consensus 163 llAG~---------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 163 LLAGS---------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEeec---------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 44443 34579999883 336667777777778888999999999877765
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||+++++.... +.+.. .. -..-+.++.++. +++..+.++ ..+.
T Consensus 212 g-----------ti~~Wn~ktg~p~~~---------~~~~e---~~------~~~~~~~~~~~~-~~~~g~~e~--~~~~ 259 (399)
T KOG0296|consen 212 G-----------TIIVWNPKTGQPLHK---------ITQAE---GL------ELPCISLNLAGS-TLTKGNSEG--VACG 259 (399)
T ss_pred c-----------eEEEEecCCCceeEE---------ecccc---cC------cCCccccccccc-eeEeccCCc--cEEE
Confidence 3 489999999865221 11111 00 012334555665 334444333 3455
Q ss_pred EECCCCcEEEecC
Q 004149 418 VNVSSGELLRITP 430 (771)
Q Consensus 418 ~d~~tg~~~~l~~ 430 (771)
++..+|++.....
T Consensus 260 ~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 260 VNNGSGKVVNCNN 272 (399)
T ss_pred EccccceEEEecC
Confidence 5666777776655
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=83.48 Aligned_cols=252 Identities=13% Similarity=0.104 Sum_probs=159.2
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcccee---ecCCccccccceEEEeCCCCCe
Q 004149 36 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQ---WAPFPVEMTGASAVVPSPSGSK 112 (771)
Q Consensus 36 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt---~~~~~~~~~~~~~~~~SPdG~~ 112 (771)
+-.-+..|.+ ||||.+++-. ..+++|-+|+...+.- ...|. ...|-.-...+....||.|...
T Consensus 212 ~KSh~EcA~F----SPDgqyLvsg---------SvDGFiEVWny~~GKl-rKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 212 QKSHVECARF----SPDGQYLVSG---------SVDGFIEVWNYTTGKL-RKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred cccchhheee----CCCCceEeec---------cccceeeeehhccchh-hhhhhhhhhcceeecccceEEEeecccHHH
Confidence 3333444554 4589877743 2345666665433211 11110 1122222245788999999999
Q ss_pred EEEEecCCCCCCeEEEEecCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004149 113 LLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
+|.-+.+ +.-.+|.+..+.-.++.-. ...++ .+++||.|+..|+..+.+.+.+ ..-...++..+.
T Consensus 278 lAsGsqD--GkIKvWri~tG~ClRrFdrAHtkGv----------t~l~FSrD~SqiLS~sfD~tvR--iHGlKSGK~LKE 343 (508)
T KOG0275|consen 278 LASGSQD--GKIKVWRIETGQCLRRFDRAHTKGV----------TCLSFSRDNSQILSASFDQTVR--IHGLKSGKCLKE 343 (508)
T ss_pred hhccCcC--CcEEEEEEecchHHHHhhhhhccCe----------eEEEEccCcchhhcccccceEE--EeccccchhHHH
Confidence 9865543 3344555544433333321 13344 5999999999999887765433 111233444556
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004149 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
...+.++.....|.+|+...+....+..+-+|+..+++.... .+.+.+..+..+..-|.+.. -..+.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe----h~iVC-------- 411 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE----HFIVC-------- 411 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc----eEEEE--------
Confidence 667889999999999988888888889999999988765332 22345566777777776654 33333
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC---CccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
|+...||++++ .+.-.+.++.+ .+..-....||-|.+|+-+..+.
T Consensus 412 ------Nrsntv~imn~-----------------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~--------- 459 (508)
T KOG0275|consen 412 ------NRSNTVYIMNM-----------------QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG--------- 459 (508)
T ss_pred ------cCCCeEEEEec-----------------cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc---------
Confidence 45668999998 55556666654 33456788999999998777653
Q ss_pred cccceeeecCCCCC
Q 004149 348 TDSLHRIDWPTNGN 361 (771)
Q Consensus 348 ~~~l~~~d~~~~~~ 361 (771)
.||-+...+|+.
T Consensus 460 --vlYCF~~~sG~L 471 (508)
T KOG0275|consen 460 --VLYCFSVLSGKL 471 (508)
T ss_pred --EEEEEEeecCce
Confidence 588888877775
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.5e-06 Score=75.98 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=74.5
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcC
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 695 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (771)
++++|+|.|+||+.|.+++.++. + .+|+++|.+....... ...+. ... +. .........+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~----------~~ig~-~~~-y~-~~~~~h~~eL~~-- 121 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENME----------GKIDR-PEE-YA-DIATKCVTNFRE-- 121 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHH----------HHhCC-Ccc-hh-hhhHHHHHHhhh--
Confidence 46999999999999999999874 3 4567788775422110 00110 000 11 011122222220
Q ss_pred ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 696 p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+-.-..+++..+.|++.+..++.+.+... .+..+.+|++|.|... .+.+..|++|+.
T Consensus 122 ------~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~f---e~~l~~I~~F~~ 178 (180)
T PRK04940 122 ------KNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKNI---SPHLQRIKAFKT 178 (180)
T ss_pred ------cCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCCH---HHHHHHHHHHHh
Confidence 11234699999999999888777665432 2577999999998743 457888999885
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.6e-05 Score=74.71 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=132.3
Q ss_pred cceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..-.++.+| ++.-++|.+..+ ...+.++ .+++..+.+..+.+.| -++--.|||||++| |+.|...
T Consensus 6 RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~dG~~L-ytTEnd~-- 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSPDGRLL-YTTENDY-- 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcCCCCEE-EEecccc--
Confidence 345678899 555555555433 3455555 5666665555544443 22467899999866 5444331
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..++..|-|||+.. ..+++. -....+.+-++.|.|||+.
T Consensus 73 ------------------------------------~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t--- 112 (305)
T PF07433_consen 73 ------------------------------------ETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET--- 112 (305)
T ss_pred ------------------------------------CCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE---
Confidence 11568899999983 344442 1233456778999999987
Q ss_pred EEEEEee--cCc----ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-ee--cCC--CCccccceeec
Q 004149 257 YLVFVGW--SSE----TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN--LTE--SISSAFFPRFS 325 (771)
Q Consensus 257 ~l~~~~~--~~~----~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~--lt~--~~~~~~~p~~S 325 (771)
|+..-- ... ..++.+ ... ...|.++|. .+|++ .+ |.. ...+++..+++
T Consensus 113 -LvVANGGI~Thpd~GR~kLNl--~tM-~psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 113 -LVVANGGIETHPDSGRAKLNL--DTM-QPSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred -EEEEcCCCccCcccCceecCh--hhc-CCceEEEec-----------------CCCceeeeeecCccccccceeeEEec
Confidence 776421 111 112222 122 235777876 56653 33 533 44579999999
Q ss_pred CCCCEEEEEecCCCCCCCCccccccc-eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSL-HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~ 404 (771)
+||.- +|..+-. |......-| .+. ..++..++.....+. ...+. ..+.++++++||..++
T Consensus 172 ~~G~V-~~a~Q~q----g~~~~~~PLva~~--~~g~~~~~~~~p~~~--------~~~l~----~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 172 GDGTV-AFAMQYQ----GDPGDAPPLVALH--RRGGALRLLPAPEEQ--------WRRLN----GYIGSIAADRDGRLIA 232 (305)
T ss_pred CCCcE-EEEEecC----CCCCccCCeEEEE--cCCCcceeccCChHH--------HHhhC----CceEEEEEeCCCCEEE
Confidence 99984 4444433 322222222 222 223322211111000 00111 1345789999999888
Q ss_pred EEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 405 LSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 405 ~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+++...+...+| |..+|++.....
T Consensus 233 ~tsPrGg~~~~~--d~~tg~~~~~~~ 256 (305)
T PF07433_consen 233 VTSPRGGRVAVW--DAATGRLLGSVP 256 (305)
T ss_pred EECCCCCEEEEE--ECCCCCEeeccc
Confidence 888777766666 888998876654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.1e-05 Score=77.83 Aligned_cols=294 Identities=13% Similarity=0.107 Sum_probs=157.8
Q ss_pred CCCCcceEE-EEEeechhhcc-cceeEEEEEEeecCCCCccceeecCCcc--cc-ccceEEEeCCCCCeEEEEecCCCCC
Q 004149 49 GNGNGTQAM-FSISQPNLLAN-KRKKFMLSTVISKENENSVTFQWAPFPV--EM-TGASAVVPSPSGSKLLVVRNPENES 123 (771)
Q Consensus 49 ~s~dg~~v~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lt~~~~~~--~~-~~~~~~~~SPdG~~la~~~~~~~~~ 123 (771)
.||.-++|+ |+........+ .....+.+||+.++-- .+ .|+. +. .--....||-|++++|=+..+.
T Consensus 257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l-kr-----sF~~~~~~~~~WP~frWS~DdKy~Arm~~~s--- 327 (698)
T KOG2314|consen 257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL-KR-----SFPVIKSPYLKWPIFRWSHDDKYFARMTGNS--- 327 (698)
T ss_pred cCCccceEEEecCCccccCcccCCCceEEEEEccccch-hc-----ceeccCCCccccceEEeccCCceeEEeccce---
Confidence 355666544 44332222211 1234677778855421 11 1221 00 1123478999999998664321
Q ss_pred CeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004149 124 PIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
+.+..... -.+.+. +..+. .+..++|||-+..|||.......
T Consensus 328 ---isIyEtps-f~lld~Kslki~-------gIr~FswsP~~~llAYwtpe~~~-------------------------- 370 (698)
T KOG2314|consen 328 ---ISIYETPS-FMLLDKKSLKIS-------GIRDFSWSPTSNLLAYWTPETNN-------------------------- 370 (698)
T ss_pred ---EEEEecCc-eeeecccccCCc-------cccCcccCCCcceEEEEcccccC--------------------------
Confidence 22221111 112221 11111 12589999999999997654321
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee-eeeeeeccCCce
Q 004149 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPCA 281 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~-~g~~~~~~~~~~ 281 (771)
....+-++.+.++...+.. --.+.......|-..|++ |.|-..+....+ .|.. .+-+
T Consensus 371 -------------~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f----~n~e 428 (698)
T KOG2314|consen 371 -------------IPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQF----SNLE 428 (698)
T ss_pred -------------CcceEEEEecCccceeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceE----eeEE
Confidence 1134455555555443331 112335567899999998 988776554333 2222 1236
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|+.++= ..-.+.. .+-...+...+|-|.|.+++.++.... ...+-.+...+...
T Consensus 429 Ifrire-----------------KdIpve~-velke~vi~FaWEP~gdkF~vi~g~~~--------k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 429 IFRIRE-----------------KDIPVEV-VELKESVIAFAWEPHGDKFAVISGNTV--------KNTVSFYAVETNIK 482 (698)
T ss_pred EEEeec-----------------cCCCcee-eecchheeeeeeccCCCeEEEEEcccc--------ccceeEEEeecCCC
Confidence 666652 1111111 122335678899999999999987652 23344444443211
Q ss_pred C-CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeeE
Q 004149 362 F-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSL 439 (771)
Q Consensus 362 ~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~ 439 (771)
+ .+.... +. .....+.|||.|+.+++.+-......|+-+|++-...+.+... .......-
T Consensus 483 ~~~lVk~~---------------dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~ve 544 (698)
T KOG2314|consen 483 KPSLVKEL---------------DK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVE 544 (698)
T ss_pred chhhhhhh---------------cc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccce
Confidence 1 111110 00 1234678999999888877665566788888764444444322 22345567
Q ss_pred EeecCCEEEEEEeCC
Q 004149 440 LTLDGDNIIAVSSSP 454 (771)
Q Consensus 440 ~s~d~~~l~~~~s~~ 454 (771)
|+|.|++++...+..
T Consensus 545 WDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSW 559 (698)
T ss_pred ECCCCCEEEEeeehh
Confidence 999999998877655
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.2e-07 Score=88.08 Aligned_cols=178 Identities=16% Similarity=0.234 Sum_probs=108.5
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
..-||.++...++.-.+........+||++-|..+-... ..+.-=++.||.|+.++++| ++.+.. .+ ..
T Consensus 220 ks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPG---FagSTG--~P--~p 288 (517)
T KOG1553|consen 220 KSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPG---FAGSTG--LP--YP 288 (517)
T ss_pred eecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCC---ccccCC--CC--Cc
Confidence 344667777777754433333445778888884432111 12222357899999999998 433321 11 22
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCc-chhhhhcc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYG 672 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~ 672 (771)
.++...+.+.+++.++.-....+.|.++|+|.||+.++++|..+|+ ++++|+-+.+-|+....-.. +|. |.-.
T Consensus 289 ~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~r-MP~~~~gi---- 362 (517)
T KOG1553|consen 289 VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFR-MPTFFSGI---- 362 (517)
T ss_pred ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhh-chHHHHHH----
Confidence 3345566677888888766778999999999999999999999997 89999888776654332111 111 1000
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp 719 (771)
-..........+-...+.+.+.|+++|--.+|+++.
T Consensus 363 -----------V~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 363 -----------VEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred -----------HHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 001112222223334455667888888888887764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-06 Score=84.81 Aligned_cols=211 Identities=14% Similarity=0.135 Sum_probs=122.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....||++|+.++-.+-+. .+.+|+ .|+.........-. .++.|.||+..++++..
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~----------~cvkf~pd~~n~fl~G~---- 319 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVP----------TCVKFHPDNQNIFLVGG---- 319 (503)
T ss_pred hhhhhhhccccCCeeeeeecce-----eeeeeccccceEEEEEecCCCc----------eeeecCCCCCcEEEEec----
Confidence 5588899999999998776654 677774 34333333332222 58999999987877632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~ 255 (771)
.+..|..||+.++++.+- .... ..+....|-++|++
T Consensus 320 ---------------------------------------sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~r-- 356 (503)
T KOG0282|consen 320 ---------------------------------------SDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGRR-- 356 (503)
T ss_pred ---------------------------------------CCCcEEEEeccchHHHHH--HHhhhhheeeeEEccCCce--
Confidence 346788888888876544 2222 24566778888887
Q ss_pred cEEEEEeecCccee----------------------------eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004149 256 QYLVFVGWSSETRK----------------------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 256 ~~l~~~~~~~~~~~----------------------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
.+-++....-+- .++..|.+-...|+++.+.. .-.-.
T Consensus 357 --FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-------------~~r~n 421 (503)
T KOG0282|consen 357 --FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-------------PFRLN 421 (503)
T ss_pred --EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-------------ccccC
Confidence 555543222100 11111112222333332200 00000
Q ss_pred cceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004149 308 PVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 308 ~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
..++...+ .+......|||||++|+..+.+ ..++.|||++-+........+
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdwkt~kl~~~lkah~---------------- 474 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDWKTTKLVSKLKAHD---------------- 474 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeechhhhhhhccccCC----------------
Confidence 11111111 3345678999999999876655 359999998865432221111
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 386 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
.-...+.|.|-....+++..++|...+|
T Consensus 475 ---~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 475 ---QPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ---cceEEEEecCCCcceeEecccCceeEec
Confidence 1233567888888788888888877766
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.5e-05 Score=73.11 Aligned_cols=271 Identities=14% Similarity=0.067 Sum_probs=142.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....||-||.+||..--. +.-.+|.+..++....+...-.++ .-+.|.|-+..|++.+++...
T Consensus 107 DSVt~~~FshdgtlLATGdms--G~v~v~~~stg~~~~~~~~e~~di----------eWl~WHp~a~illAG~~DGsv-- 172 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMS--GKVLVFKVSTGGEQWKLDQEVEDI----------EWLKWHPRAHILLAGSTDGSV-- 172 (399)
T ss_pred CceEEEEEccCceEEEecCCC--ccEEEEEcccCceEEEeecccCce----------EEEEecccccEEEeecCCCcE--
Confidence 568889999999999853211 222233333333333332122222 588999998888877766532
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..|.......-+....+.....-..|.||+...+.+..+..|.+||+.++.+.............-..++.+|. +
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-----~ 247 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-----T 247 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-----e
Confidence 12222222222233334444456678999777778888899999999999865442111111122234444554 4
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC---------CCCccccceeecCCCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT---------ESISSAFFPRFSPDGK 329 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt---------~~~~~~~~p~~SpDG~ 329 (771)
++..+... ..+.+.. .+|+..... .......++.+.|-..
T Consensus 248 ~~~g~~e~--------------~~~~~~~-----------------~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 248 LTKGNSEG--------------VACGVNN-----------------GSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred eEeccCCc--------------cEEEEcc-----------------ccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 44443222 2333332 222221111 1122233444443333
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~ 409 (771)
.|=...- | .-...|.+||++....+.+...... +..+.|.+ ..+|+ ++..
T Consensus 297 ~lpL~A~------G--~vdG~i~iyD~a~~~~R~~c~he~~--------------------V~~l~w~~-t~~l~-t~c~ 346 (399)
T KOG0296|consen 297 KLPLAAC------G--SVDGTIAIYDLAASTLRHICEHEDG--------------------VTKLKWLN-TDYLL-TACA 346 (399)
T ss_pred ccchhhc------c--cccceEEEEecccchhheeccCCCc--------------------eEEEEEcC-cchhe-eecc
Confidence 2211111 1 1134688999988777655444433 33456876 44454 4443
Q ss_pred CCeeEEEEEECCCCcEEEec-CCCCCceeeEEeecCCEEEEEE
Q 004149 410 GSSQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
++ .++.+|..+|++...- .....+...+++++++.++.++
T Consensus 347 ~g--~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 347 NG--KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred Cc--eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 44 4566688899877543 3333455567788887766554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-06 Score=83.38 Aligned_cols=240 Identities=10% Similarity=0.092 Sum_probs=150.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....||++|.+++-... ...+.+| ..-+..+.++.... +.+.+++|||...+++..+++...+
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~-----gG~iKyWqpnmnnVk~~~ahh~--------eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDK-----GGMIKYWQPNMNNVKIIQAHHA--------EAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred ccceeEEEccCCCEEEEcCC-----CceEEecccchhhhHHhhHhhh--------hhhheeccCCCCceeEEecCCCeEE
Confidence 34788999999999964322 2377788 33333333332111 1237999999888888877776554
Q ss_pred CCCccCCCCCCCCCCccCCCCC-CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWK-GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.|+........... ...|. ....|-|.-|...++.+.+-+-+||..+|....-. ......+..+.|+|+|.+
T Consensus 206 --iWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~N~--- 278 (464)
T KOG0284|consen 206 --IWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNGNW--- 278 (464)
T ss_pred --EEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCCCe---
Confidence 44433333333332 23333 46667777788888888899999999988754431 344557889999999987
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ +++.+-++|+. .-.++.....+...+.+..|+|--.-|.....
T Consensus 279 -Llt~s---------------kD~~~kv~DiR----------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 279 -LLTGS---------------KDQSCKVFDIR----------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -eEEcc---------------CCceEEEEehh----------------HhHHHHHhhcchhhheeeccccccccceeecc
Confidence 88776 44567777861 12345566667777899999998777654432
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
- ..+|..+.+...+....... .+...+-+++|.|=|. |+.+.+.+.....|
T Consensus 327 ~----------Dgsvvh~~v~~~~p~~~i~~------------------AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 327 S----------DGSVVHWVVGLEEPLGEIPP------------------AHDGEIWSLAYHPLGH-ILATGSNDRTVRFW 377 (464)
T ss_pred C----------CCceEEEeccccccccCCCc------------------ccccceeeeeccccce-eEeecCCCcceeee
Confidence 2 23466666553332211111 1222456788999996 66776666666666
Q ss_pred EEE
Q 004149 417 SVN 419 (771)
Q Consensus 417 ~~d 419 (771)
.-+
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00043 Score=69.85 Aligned_cols=264 Identities=15% Similarity=0.145 Sum_probs=141.7
Q ss_pred cceEEEeCCCCCeEEEEec-----CCCCCCeEEEEecCCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 100 GASAVVPSPSGSKLLVVRN-----PENESPIQFELWSQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
-......||||+.++.... ..+.+..++.+|+.... ...+.++.....-+. -.-..+.+|+|||++++-.-
T Consensus 37 ~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~--~~~~~~~ls~dgk~~~V~N~ 114 (342)
T PF06433_consen 37 FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV--PYKNMFALSADGKFLYVQNF 114 (342)
T ss_dssp SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS----GGGEEE-TTSSEEEEEEE
T ss_pred cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec--ccccceEEccCCcEEEEEcc
Confidence 3556888999999975432 22366789999965544 444455543110000 01246789999998876422
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
. ....+-|+|++.+++..- ++-..+..-+-+.++
T Consensus 115 T------------------------------------------Pa~SVtVVDl~~~kvv~e--i~~PGC~~iyP~~~~-- 148 (342)
T PF06433_consen 115 T------------------------------------------PATSVTVVDLAAKKVVGE--IDTPGCWLIYPSGNR-- 148 (342)
T ss_dssp S------------------------------------------SSEEEEEEETTTTEEEEE--EEGTSEEEEEEEETT--
T ss_pred C------------------------------------------CCCeEEEEECCCCceeee--ecCCCEEEEEecCCC--
Confidence 2 237899999999987655 333333222222222
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecC---C--CCccccceeecC
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLT---E--SISSAFFPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt---~--~~~~~~~p~~Sp 326 (771)
+ |.+ .|.+ +.+..+.++ +.|+.. +.+ . ...-...|.++.
T Consensus 149 ~------F~~-----------lC~D--Gsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 149 G------FSM-----------LCGD--GSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp E------EEE-----------EETT--SCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred c------eEE-----------EecC--CceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceEC
Confidence 1 211 2533 356666663 233322 111 1 122345677888
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCcccccCCCCCCccccCCCEEE
Q 004149 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~~s~dg~~l~ 404 (771)
++.+++|.+... .+|..|+.+.+.+.. ....++... .++-.|| +....++.+...+||
T Consensus 194 ~~~~~~F~Sy~G-----------~v~~~dlsg~~~~~~-----~~~~~~t~~e~~~~WrPG----G~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 194 DGGRLYFVSYEG-----------NVYSADLSGDSAKFG-----KPWSLLTDAEKADGWRPG----GWQLIAYHAASGRLY 253 (342)
T ss_dssp TTTEEEEEBTTS-----------EEEEEEETTSSEEEE-----EEEESS-HHHHHTTEEE-----SSS-EEEETTTTEEE
T ss_pred CCCeEEEEecCC-----------EEEEEeccCCccccc-----CcccccCccccccCcCCc----ceeeeeeccccCeEE
Confidence 888899998763 588888877653211 111111111 1233444 345577888777787
Q ss_pred EEeeeC-------CeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 405 LSSIWG-------SSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 405 ~~~~~~-------~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
+....+ ....||.+|+++++.. ++.... .......+.|.+-+++..+.. -..|+++|..+++
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk 323 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAG--DGTLDVYDAATGK 323 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETT--TTEEEEEETTT--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCc
Confidence 765432 3457999999998755 443222 223456777777666655442 2568888876554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=83.01 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=64.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcch--HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHH----HH
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID----HV 607 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~----~l 607 (771)
..++|.||.-.-.++......|. ..+....+.|..|+.+-+.-.+. ..+.++|+..+.. .+
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~GHPvYFV~F~p~P~-------------pgQTl~DV~~ae~~Fv~~V 132 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRAGHPVYFVGFFPEPE-------------PGQTLEDVMRAEAAFVEEV 132 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHcCCCeEEEEecCCCC-------------CCCcHHHHHHHHHHHHHHH
Confidence 35678777654322322222332 23444446699988887654322 2335777776544 33
Q ss_pred HHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEe-cCCcc
Q 004149 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLC 651 (771)
Q Consensus 608 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~-~~p~~ 651 (771)
.+.. -+..|..|+|.|.||+.++++|+.+|+++.-+|+ .+|+.
T Consensus 133 ~~~h-p~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 133 AERH-PDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHhC-CCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 3332 2344899999999999999999999998876654 44543
|
Their function is unknown. |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-05 Score=72.52 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=115.7
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..+++..+..+.+||+++|+.... ......+..+.|+++|.. ++++.... . ...+.|..+|+..
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~l~~tD~~----m------g~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----ILASTDKQ----M------GYTCFVSVFDIRD 129 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----EEEEehhh----c------CcceEEEEEEccC
Confidence 455677789999999999998777 566667888999999998 88876321 1 2334677777621
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
. .+...+.+ ...+......+....|+|-|+.|+....+ ..|-.||+.+|....-...
T Consensus 130 ~----------~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~-----------G~is~~da~~g~~~v~s~~- 187 (327)
T KOG0643|consen 130 D----------SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED-----------GSISIYDARTGKELVDSDE- 187 (327)
T ss_pred C----------hhhhcccCceEEecCCccceeeeeecccCCEEEEecCC-----------CcEEEEEcccCceeeechh-
Confidence 0 00012333 44555555678899999999999865544 3588999888754211111
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEE
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~ 448 (771)
++...+..+++|+|.. .+++++.+....|+ |..+-++.+--.....+...+++|-.+.++
T Consensus 188 -----------------~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~--D~~tl~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 188 -----------------EHSSKINDLQFSRDRT-YFITGSKDTTAKLV--DVRTLEVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred -----------------hhccccccccccCCcc-eEEecccCccceee--eccceeeEEEeeecccccceecccccceEE
Confidence 1223567889999986 55666666666666 544544443322223345556777655555
Q ss_pred EE
Q 004149 449 AV 450 (771)
Q Consensus 449 ~~ 450 (771)
+.
T Consensus 248 lg 249 (327)
T KOG0643|consen 248 LG 249 (327)
T ss_pred ec
Confidence 43
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-05 Score=85.98 Aligned_cols=232 Identities=15% Similarity=0.129 Sum_probs=138.1
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
+..++|.|||+.|.....++..+ .|......+.+...+. .-.....+..+-+..+++..+..+.++....++..-+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir--~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIR--KWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceE--EeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCcccee
Confidence 35889999999776655444333 2221111111111110 00001112222234556667788888888877765331
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.-...+...+++-+|+. +++.+. +..|-+++++ ++...+.+..
T Consensus 93 -~Rftlp~r~~~v~g~g~~----iaagsd---------------D~~vK~~~~~----------------D~s~~~~lrg 136 (933)
T KOG1274|consen 93 -ARFTLPIRDLAVSGSGKM----IAAGSD---------------DTAVKLLNLD----------------DSSQEKVLRG 136 (933)
T ss_pred -eeeeccceEEEEecCCcE----EEeecC---------------ceeEEEEecc----------------ccchheeecc
Confidence 344556778899999999 998872 2357777763 5566777888
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
+.+.+....|+|.|..||..+-+. .|.+||++++.......+.. ++..|- -......+
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG-----------~v~iw~~~~~~~~~tl~~v~---------k~n~~~--~s~i~~~~ 194 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDG-----------KVQIWDLQDGILSKTLTGVD---------KDNEFI--LSRICTRL 194 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCc-----------eEEEEEcccchhhhhcccCC---------cccccc--ccceeeee
Confidence 888999999999999999888653 58899998766533222111 011111 11223578
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC---CCceeeEEeecCCEEEEE
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~---~~~~~~~~s~d~~~l~~~ 450 (771)
+|+|+|..+++... ++...+| +.++.+...-.... ..+....|||.|++|++.
T Consensus 195 aW~Pk~g~la~~~~-d~~Vkvy--~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 195 AWHPKGGTLAVPPV-DNTVKVY--SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred eecCCCCeEEeecc-CCeEEEE--ccCCceeheeecccccccceEEEEEcCCCcEEeee
Confidence 99999887776653 3334444 55565544332221 236678899998887654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00011 Score=71.45 Aligned_cols=60 Identities=3% Similarity=-0.116 Sum_probs=38.9
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004149 390 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 390 ~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~ 450 (771)
+.+-++||+|+.++ .+.+..-.+.||.+|+...++..+..-...+....|.|.--.|+..
T Consensus 320 g~g~lafs~Ds~y~-aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYA-ATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred ccceeeecCCceEE-eeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEE
Confidence 46678999998644 5555556678999999877766554433334455666655444433
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-05 Score=82.43 Aligned_cols=195 Identities=15% Similarity=0.209 Sum_probs=108.3
Q ss_pred EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004149 113 LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
|.++.+++ ..++..++ ...+....+......| ..+.+||||++++.. ..
T Consensus 7 l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~r------------------ 56 (369)
T PF02239_consen 7 LFYVVERG--SGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NR------------------ 56 (369)
T ss_dssp EEEEEEGG--GTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ET------------------
T ss_pred EEEEEecC--CCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cC------------------
Confidence 44554442 33566676 4444445554433444 467899999986554 22
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...|.++|+.++++..- ........++++||||++ ++...+
T Consensus 57 -------------------------dg~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~~v~n~-------- 97 (369)
T PF02239_consen 57 -------------------------DGTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----VYVANY-------- 97 (369)
T ss_dssp -------------------------TSEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----EEEEEE--------
T ss_pred -------------------------CCeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----EEEEec--------
Confidence 25799999999886544 344456778999999996 554432
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccceeecCCCCEEEEEecCCCCCCC
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-------~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
.+..+.++|. ++.+. +.+... ...+....-||+...+++.-.+.
T Consensus 98 ------~~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~----- 149 (369)
T PF02239_consen 98 ------EPGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT----- 149 (369)
T ss_dssp ------ETTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT-----
T ss_pred ------CCCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC-----
Confidence 2237888886 44443 222211 11234556688888776666553
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004149 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
.+|+++|......... ..+. -+.|+ ....|+||+++++......+ .+-.+|.+++
T Consensus 150 -----~~I~vVdy~d~~~~~~--------~~i~---~g~~~-------~D~~~dpdgry~~va~~~sn--~i~viD~~~~ 204 (369)
T PF02239_consen 150 -----GEIWVVDYSDPKNLKV--------TTIK---VGRFP-------HDGGFDPDGRYFLVAANGSN--KIAVIDTKTG 204 (369)
T ss_dssp -----TEEEEEETTTSSCEEE--------EEEE-----TTE-------EEEEE-TTSSEEEEEEGGGT--EEEEEETTTT
T ss_pred -----CeEEEEEeccccccce--------eeec---ccccc-------cccccCcccceeeecccccc--eeEEEeeccc
Confidence 4799998765432111 0010 12222 35579999998876554333 7778899888
Q ss_pred cEEEec
Q 004149 424 ELLRIT 429 (771)
Q Consensus 424 ~~~~l~ 429 (771)
++..+.
T Consensus 205 k~v~~i 210 (369)
T PF02239_consen 205 KLVALI 210 (369)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 877654
|
... |
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-06 Score=69.52 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=45.2
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~ 579 (771)
|.+|.+..+.|+. . .+.+|+++||.... ...|...++.|+++||.|+++|+||.+.
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~eh--~~ry~~~a~~L~~~G~~V~~~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGEH--SGRYAHLAEFLAEQGYAVFAYDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHHH--HHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 5678888998873 2 67899999996544 3368889999999999999999999443
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-05 Score=81.22 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH---CCcEEEEECCCCCCCCChhhhhcCCCCccccchh----hHHHHHHHHHH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN----DVLTAIDHVID 609 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~----D~~~~i~~l~~ 609 (771)
.++||++.|.|+. ...|...+..|.+ ..|.|+++.+.|........... .+......+ -..+.++.+..
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~--~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFS--PNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccccc--CCCCccCHHHHHHHHHHHHHHHhh
Confidence 4789999998886 4456666666653 48999999999843322210000 111112233 33344444444
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCcc
Q 004149 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 651 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~ 651 (771)
.......++.|+|||.|+++++.++.+.+ ..+..+++..|.+
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 32114578999999999999999999988 6788888888854
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-05 Score=77.84 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=93.0
Q ss_pred cccccCCcCcccCCccCceEEEEEccC----Cceee--------ccCCCCCCccceEEEecCCCCCccEEEEEeecCcce
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVININS----GEVQA--------VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~----~~~~~--------l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
-..|+|..+..++..-+.-|++|..+. +..++ +...++...+.+..|.+||.. ++-.+.
T Consensus 145 clawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~----l~tAS~----- 215 (445)
T KOG2139|consen 145 CLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTI----LVTASF----- 215 (445)
T ss_pred EEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCE----Eeeccc-----
Confidence 455777666555555667788886542 11111 111345567889999999997 776652
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
..++|.++|. +++...+|. ...+......|||||.+|.-.+-+.
T Consensus 216 ---------gsssi~iWdp-----------------dtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da--------- 260 (445)
T KOG2139|consen 216 ---------GSSSIMIWDP-----------------DTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA--------- 260 (445)
T ss_pred ---------CcceEEEEcC-----------------CCCCcccccccCCCceeeEEEcCCCCEEEEecccc---------
Confidence 3347888887 677777776 5566788899999999875444332
Q ss_pred cccceeee-cCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 348 TDSLHRID-WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 348 ~~~l~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
...||--+ .-+.+ +.+. -+ ..+...+|+|+|++|+|+.. +...||.+..
T Consensus 261 vfrlw~e~q~wt~e-rw~l-----------------gs----grvqtacWspcGsfLLf~~s--gsp~lysl~f 310 (445)
T KOG2139|consen 261 VFRLWQENQSWTKE-RWIL-----------------GS----GRVQTACWSPCGSFLLFACS--GSPRLYSLTF 310 (445)
T ss_pred eeeeehhcccceec-ceec-----------------cC----CceeeeeecCCCCEEEEEEc--CCceEEEEee
Confidence 23344111 00101 1110 11 13567899999999999875 4455666543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00012 Score=76.41 Aligned_cols=253 Identities=15% Similarity=0.191 Sum_probs=141.9
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC--eEEEEecCC
Q 004149 43 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPE 120 (771)
Q Consensus 43 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~~~~~ 120 (771)
+| .|..|.|-...++... ..+..+++.........|.. .++....+||.+. .+|+-.-..
T Consensus 128 ~W-~~qfs~dEsl~arlv~----------nev~f~~~~~f~~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 128 GW-VPQFSIDESLAARLVS----------NEVQFYDLGSFKTIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred Cc-ccccccchhhhhhhhc----------ceEEEEecCCccceeeeeec-------cceeeEEecCCCCCceEEEEccCC
Confidence 35 5666777766666542 24555555333222223321 3466777777644 566554444
Q ss_pred CCCCeEEEEecC---CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004149 121 NESPIQFELWSQ---SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 121 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
++......++.- +....+-.-..-..+++ ...|.+-|+-|+.++....++. ..+
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-------qm~WN~~gt~LLvLastdVDkt----------------n~S 246 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKV-------QMKWNKLGTALLVLASTDVDKT----------------NAS 246 (566)
T ss_pred CCCCcEEEEeccccccccchhhhcccccccee-------EEEeccCCceEEEEEEEeecCC----------------Ccc
Confidence 466666667622 21111111111111222 7889999999988875443221 111
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeecc
Q 004149 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
|. +...||.++.++..+..- ......+.++.|+|+|+. .+.+- | -
T Consensus 247 YY----------------GEq~Lyll~t~g~s~~V~--L~k~GPVhdv~W~~s~~E----F~Vvy--------G-----f 291 (566)
T KOG2315|consen 247 YY----------------GEQTLYLLATQGESVSVP--LLKEGPVHDVTWSPSGRE----FAVVY--------G-----F 291 (566)
T ss_pred cc----------------ccceEEEEEecCceEEEe--cCCCCCceEEEECCCCCE----EEEEE--------e-----c
Confidence 11 237899999985444333 566778899999999998 66553 1 1
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
-+..+-++|+ .+..+-.+.+ +.-....|||-|+.|++..-.+ -..++-+||+.
T Consensus 292 MPAkvtifnl-----------------r~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGN--------L~G~mEvwDv~ 344 (566)
T KOG2315|consen 292 MPAKVTIFNL-----------------RGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGN--------LPGDMEVWDVP 344 (566)
T ss_pred ccceEEEEcC-----------------CCCEeEeCCC--CCccceEECCCCCEEEEeecCC--------CCCceEEEecc
Confidence 2345666665 3333333332 3345578999999999887654 23467788877
Q ss_pred CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-----CCeeEEEEEE
Q 004149 358 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-----GSSQVIISVN 419 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-----~~~~~l~~~d 419 (771)
+-+ .+..-.. ..-.-..|+|||++++-++.. ++...||.+.
T Consensus 345 n~K--~i~~~~a-------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 345 NRK--LIAKFKA-------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred chh--hcccccc-------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 632 2221110 012345799999988765542 3445566553
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.2e-05 Score=74.31 Aligned_cols=170 Identities=14% Similarity=0.171 Sum_probs=97.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCccccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 148 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 148 (771)
.++.+++||+....-+. .+.. ..-..++|.|+|-.+|..... +.-.+|.+- -++.+-..+.+....+
T Consensus 120 ~D~tvrLWDlR~~~cqg-~l~~-------~~~pi~AfDp~GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~-- 187 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKKCQG-LLNL-------SGRPIAAFDPEGLIFALANGS--ELIKLYDLRSFDKGPFTTFSITDNDE-- 187 (311)
T ss_pred cCCeEEeeEecCCCCce-EEec-------CCCcceeECCCCcEEEEecCC--CeEEEEEecccCCCCceeEccCCCCc--
Confidence 44667777775332211 1111 123468999999766655432 234455555 3344444443332211
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004149 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
..+..+.||||||.|+...+ ...++++|.-+|
T Consensus 188 ----~ew~~l~FS~dGK~iLlsT~--------------------------------------------~s~~~~lDAf~G 219 (311)
T KOG1446|consen 188 ----AEWTDLEFSPDGKSILLSTN--------------------------------------------ASFIYLLDAFDG 219 (311)
T ss_pred ----cceeeeEEcCCCCEEEEEeC--------------------------------------------CCcEEEEEccCC
Confidence 12368999999999988633 357888998888
Q ss_pred ceeec-cCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC
Q 004149 229 EVQAV-KGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 306 (771)
Q Consensus 229 ~~~~l-~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 306 (771)
.+..- .+.+.. ....++.|+|||+. |+-.+ .++.|+++++ ++
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~F----vl~gs---------------~dg~i~vw~~-----------------~t 263 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKF----VLSGS---------------DDGTIHVWNL-----------------ET 263 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcE----EEEec---------------CCCcEEEEEc-----------------CC
Confidence 75433 111111 12357899999995 54443 2346777777 55
Q ss_pred Ccce-ecCC-CCccccceeecCCCCEEEEEecC
Q 004149 307 LPVV-NLTE-SISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 307 ~~~~-~lt~-~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+..+ .+.. ..+.+..++|+|- +..|++..
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~--~~mf~sa~ 294 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPR--YAMFVSAS 294 (311)
T ss_pred CcEeeEecCCCCCCccccccCCc--eeeeeecC
Confidence 5543 3333 3455777889994 45565544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0001 Score=81.29 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=95.3
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC-ceeecc
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVK 234 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-~~~~l~ 234 (771)
..++++-+|++||+.+++ ..|-+++...+ ..+.+
T Consensus 100 r~~~v~g~g~~iaagsdD--------------------------------------------~~vK~~~~~D~s~~~~l- 134 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDD--------------------------------------------TAVKLLNLDDSSQEKVL- 134 (933)
T ss_pred eEEEEecCCcEEEeecCc--------------------------------------------eeEEEEeccccchheee-
Confidence 588999999999997654 45666666544 44455
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT 313 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt 313 (771)
...+..+.++.+.|.|+. ||.++ -++.|+++++ +.+.+ ..|+
T Consensus 135 -rgh~apVl~l~~~p~~~f----LAvss---------------~dG~v~iw~~-----------------~~~~~~~tl~ 177 (933)
T KOG1274|consen 135 -RGHDAPVLQLSYDPKGNF----LAVSS---------------CDGKVQIWDL-----------------QDGILSKTLT 177 (933)
T ss_pred -cccCCceeeeeEcCCCCE----EEEEe---------------cCceEEEEEc-----------------ccchhhhhcc
Confidence 456667889999999997 77766 3347888888 33332 2222
Q ss_pred C---C-----CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004149 314 E---S-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 314 ~---~-----~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
. . ...+..|+|+|+|.++++...++ .+.+++-.+.+.........
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-----------~Vkvy~r~~we~~f~Lr~~~---------------- 230 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-----------TVKVYSRKGWELQFKLRDKL---------------- 230 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeeccCC-----------eEEEEccCCceeheeecccc----------------
Confidence 1 1 22367799999988888887764 25555544443321110000
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004149 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 386 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.........|||+|++|+.+. -++...+| |.++
T Consensus 231 -~ss~~~~~~wsPnG~YiAAs~-~~g~I~vW--nv~t 263 (933)
T KOG1274|consen 231 -SSSKFSDLQWSPNGKYIAAST-LDGQILVW--NVDT 263 (933)
T ss_pred -cccceEEEEEcCCCcEEeeec-cCCcEEEE--eccc
Confidence 001134568999999886543 34444455 5543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00012 Score=70.92 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=62.3
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh-hhhhhhcCCCCCCcceecCCCCcc
Q 004149 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA-SELELKESSSEDLPVVNLTESISS 318 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lt~~~~~ 318 (771)
..+..++|||++++ ++.++.... -.||-.|+.=...++ ..| ..+. ..|-...+.
T Consensus 279 saV~~~aFsn~S~r----~vtvSkDG~-------------wriwdtdVrY~~~qDpk~L-------k~g~-~pl~aag~~ 333 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTR----AVTVSKDGK-------------WRIWDTDVRYEAGQDPKIL-------KEGS-APLHAAGSE 333 (420)
T ss_pred hheeeeeeCCCcce----eEEEecCCc-------------EEEeeccceEecCCCchHh-------hcCC-cchhhcCCC
Confidence 35678899999999 998873221 144444431000011 111 1121 233333333
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
......||.|+.|+.... ..|.++...+|+... ++..+....+..++|++
T Consensus 334 p~RL~lsP~g~~lA~s~g------------s~l~~~~se~g~~~~------------------~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFG------------SDLKVFASEDGKDYP------------------ELEDIHSTTISSISYSS 383 (420)
T ss_pred ceEEEeCCCCcEEEeecC------------CceEEEEcccCccch------------------hHHHhhcCceeeEEecC
Confidence 446789999998886553 347788776655321 12222334567889999
Q ss_pred CCCEEE
Q 004149 399 DGCTML 404 (771)
Q Consensus 399 dg~~l~ 404 (771)
||++++
T Consensus 384 ~g~~~a 389 (420)
T KOG2096|consen 384 DGKYIA 389 (420)
T ss_pred CCcEEe
Confidence 999664
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00012 Score=86.89 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=113.1
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceee-cCCCCeEEEEecCC
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISW-NSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~w-SpDg~~la~~~~~~ 174 (771)
..+...+|+| +|..|+..+... .+.+|+ .+.....+..... ..++.| +++|+.|+..+.
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~~~~----------v~~v~~~~~~g~~latgs~-- 638 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKTKAN----------ICCVQFPSESGRSLAFGSA-- 638 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEecCCC----------eEEEEEeCCCCCEEEEEeC--
Confidence 5588899997 788777654433 566663 2222222221111 247788 457888887542
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~ 252 (771)
...|++||+..++. ..+ ......+..+.|+ |+.
T Consensus 639 ------------------------------------------dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 639 ------------------------------------------DHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSS 673 (793)
T ss_pred ------------------------------------------CCeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCC
Confidence 36889999876542 233 2334467788887 676
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+..+ .+..|.++|+.... ..........+..+...+....|+|+|++|+
T Consensus 674 ~----lvs~s---------------~D~~ikiWd~~~~~----------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 674 T----LVSSS---------------TDNTLKLWDLSMSI----------SGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred E----EEEEE---------------CCCEEEEEeCCCCc----------cccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 5 66655 22356667762000 0001123445555555567789999999888
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~ 412 (771)
..+.+. .+++|+........ +... .....+....... ....+..++|++++..| ++...++.
T Consensus 725 sgs~D~-----------~v~iw~~~~~~~~~-s~~~-~~~~~~~~~~~~~----~~~~V~~v~ws~~~~~l-va~~~dG~ 786 (793)
T PLN00181 725 TGSETN-----------EVFVYHKAFPMPVL-SYKF-KTIDPVSGLEVDD----ASQFISSVCWRGQSSTL-VAANSTGN 786 (793)
T ss_pred EEeCCC-----------EEEEEECCCCCceE-EEec-ccCCcccccccCC----CCcEEEEEEEcCCCCeE-EEecCCCc
Confidence 777553 47777755432110 0000 0000000000000 00124678899999865 45555666
Q ss_pred eEEEE
Q 004149 413 QVIIS 417 (771)
Q Consensus 413 ~~l~~ 417 (771)
..+|.
T Consensus 787 I~i~~ 791 (793)
T PLN00181 787 IKILE 791 (793)
T ss_pred EEEEe
Confidence 66663
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=5e-05 Score=71.12 Aligned_cols=176 Identities=14% Similarity=0.197 Sum_probs=115.5
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--c
Q 004149 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--S 131 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~ 131 (771)
+.++|+.+...|.++...+-+++++++....++..+...+ +++....|--..+.|+-..+.. .+.+| .
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd~-----tVRLWD~r 173 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADDK-----TVRLWDHR 173 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccCC-----ceEEEEec
Confidence 4678988888899998888899988887766665554444 6788888977777776543332 35566 3
Q ss_pred CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004149 132 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
.+...+.+.+...+ .++..|+||+.|-.. .
T Consensus 174 Tgt~v~sL~~~s~V----------tSlEvs~dG~ilTia-~--------------------------------------- 203 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPV----------TSLEVSQDGRILTIA-Y--------------------------------------- 203 (334)
T ss_pred cCcEEEEEecCCCC----------cceeeccCCCEEEEe-c---------------------------------------
Confidence 45555555555555 589999999866443 2
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
...|-.||..+=.+..- ..-...+.+++.+|+-. +++.+ +....+|.+|.
T Consensus 204 -----gssV~Fwdaksf~~lKs--~k~P~nV~SASL~P~k~-----~fVaG--------------ged~~~~kfDy---- 253 (334)
T KOG0278|consen 204 -----GSSVKFWDAKSFGLLKS--YKMPCNVESASLHPKKE-----FFVAG--------------GEDFKVYKFDY---- 253 (334)
T ss_pred -----CceeEEeccccccceee--ccCccccccccccCCCc-----eEEec--------------CcceEEEEEec----
Confidence 13455566655332222 12223466788999874 44443 23347888887
Q ss_pred chhhhhhhhcCCCCCCcceec--CCCCccccceeecCCCCEEE
Q 004149 292 SEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~ 332 (771)
.+++..-. ..+.+.+..++|||||..-+
T Consensus 254 -------------~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 254 -------------NTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred -------------cCCceeeecccCCCCceEEEEECCCCceee
Confidence 66665444 45567789999999998433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-05 Score=78.35 Aligned_cols=209 Identities=15% Similarity=0.137 Sum_probs=116.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....++++||+.||....++ .+.+|+=.....+... ...|+.| ..+.|||||+.|++++.
T Consensus 146 ~~k~vaf~~~gs~latgg~dg-----~lRv~~~Ps~~t~l~e-~~~~~eV------~DL~FS~dgk~lasig~------- 206 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDG-----TLRVWEWPSMLTILEE-IAHHAEV------KDLDFSPDGKFLASIGA------- 206 (398)
T ss_pred cceEEEEcCCCCEeeeccccc-----eEEEEecCcchhhhhh-HhhcCcc------ccceeCCCCcEEEEecC-------
Confidence 356789999999998764433 5666631111111111 1223333 79999999999999832
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
....||++++|. +...++...+.......|+-|+.++ .|
T Consensus 207 --------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~--~l 246 (398)
T KOG0771|consen 207 --------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQE--TL 246 (398)
T ss_pred --------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCCc--eE
Confidence 367889988883 3334223334456677888887431 12
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
...+.... ...|..+++... ..+ +-...++.......+.+...|+||+.++..+++.
T Consensus 247 ~laa~~~~------------~~~v~~~~~~~w----------~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 247 RLAASQFP------------GGGVRLCDISLW----------SGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred EEEEecCC------------CCceeEEEeeee----------ccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 22221111 112222222100 000 2234455555566788999999999999888764
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+-+++..+=+..++. |..+...+..+.|+||.+.+.- .+.+....+..+
T Consensus 304 -----------sVai~~~~~lq~~~~v------------------k~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~l 353 (398)
T KOG0771|consen 304 -----------SVAIYDAKSLQRLQYV------------------KEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTKL 353 (398)
T ss_pred -----------cEEEEEeceeeeeEee------------------hhhheeeeeeEEEcCCcCcccc-cccCCceeEEEE
Confidence 2555554432211111 1112224567889999986643 444555666666
Q ss_pred EC
Q 004149 419 NV 420 (771)
Q Consensus 419 d~ 420 (771)
..
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 55
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=81.00 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=64.2
Q ss_pred hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHH
Q 004149 556 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 556 ~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
...+..+.++|..|++++.++... +.. ..++.....+.+..+++.+++.. ..++|-++|+|.||.++..+++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd~-~~~-----~~~~edYi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPDA-SLA-----AKNLEDYILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCchH-hhh-----hccHHHHHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHH
Confidence 357889999999999999886321 111 12222333467778888887763 3478999999999999999998
Q ss_pred hCCCc-eeEEEecCCccch
Q 004149 636 QAPDK-FVAAAARNPLCNL 653 (771)
Q Consensus 636 ~~p~~-~~a~v~~~p~~~~ 653 (771)
.++.+ ++.++......|.
T Consensus 201 ~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhhcccccceeeecchhh
Confidence 88776 7777665554443
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-05 Score=78.14 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHHcCCCCC--CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh--c-CCCCCcchhhhhc
Q 004149 597 VNDVLTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--G-TTDIPDWCYVESY 671 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~--~-~~~~~~~~~~~~~ 671 (771)
+-|++.|+.++..+..-.. -++.++|+|+||+++...+.-.|-.+.+++--++.+.....+ + ..+...+......
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~ 242 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEF 242 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccc
Confidence 4577778888877633233 389999999999999999988899999988777655321111 0 0010000000000
Q ss_pred --c-CCCCCcCCCC--------CC---hh--hHHHHhhcCccccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 672 --G-SKGKDSFTES--------PS---VE--DLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 672 --~-~~~~~~~~~~--------~~---~~--~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
. ......+... +. .+ ..+.......+..-.+. ++-.+..|+..|..+|.++-+++++.+++.
T Consensus 243 ~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~l 322 (403)
T PF11144_consen 243 FNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKNL 322 (403)
T ss_pred cccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHHc
Confidence 0 0000000000 00 00 00011111111111122 244666799999999999999999999999
Q ss_pred CCCEEEEEeC
Q 004149 734 GVETKVIVFP 743 (771)
Q Consensus 734 g~~~~~~~~~ 743 (771)
|.++++..+.
T Consensus 323 gfda~l~lIk 332 (403)
T PF11144_consen 323 GFDATLHLIK 332 (403)
T ss_pred CCCeEEEEec
Confidence 9999999883
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00016 Score=74.95 Aligned_cols=237 Identities=15% Similarity=0.129 Sum_probs=139.1
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCC----CCcchHHHHHHH-HCCcEEEEEC-CCCCCC-CCh------------
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVS----LSSYSKSLAFLS-SVGYSLLIVN-YRGSLG-FGE------------ 582 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~----~~~~~~~~~~la-~~G~~V~~~d-~rG~~~-~g~------------ 582 (771)
...++.|++ .......++++.||..... .......+..+| .-|-.|+.+. -+..+- |..
T Consensus 51 ~l~I~vP~~--~~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~qvPNQpl~f~~d~~~r~ED~iIA 128 (367)
T PF10142_consen 51 WLTIYVPKN--DKNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILYQVPNQPLTFDNDPKPRTEDAIIA 128 (367)
T ss_pred EEEEEECCC--CCCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeCcCCCCCeEeCCCCccccHHHHHH
Confidence 345778885 2455678999998762211 112223334443 4555555443 222211 111
Q ss_pred -hhhhcCC---CCccc--cchhhHHHHHHHHH----HcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEec-CCcc
Q 004149 583 -EALQSLP---GKVGS--QDVNDVLTAIDHVI----DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLC 651 (771)
Q Consensus 583 -~~~~~~~---~~~~~--~~~~D~~~~i~~l~----~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~ 651 (771)
+|..-+. ..+.. ....-+.+|++.+. +...++.++.+|.|.|-=|..+...|+ ..++++|++.. -++.
T Consensus 129 ytW~~fl~~~d~~w~l~~PMtka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~L 207 (367)
T PF10142_consen 129 YTWRKFLETGDPEWPLHLPMTKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVL 207 (367)
T ss_pred HHHHHHhccCCccchhhhhHHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccC
Confidence 1111111 11111 11334444444333 334567899999999999999998888 45678877743 2344
Q ss_pred chhhhhcC--CCCC-cchh-hhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004149 652 NLALMVGT--TDIP-DWCY-VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 652 ~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~ 727 (771)
++...... .... .|.+ ...|...+.... ....+......-.+|+.+.++++.|-||+.|..|++..++.+.-++
T Consensus 208 N~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~--l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~ 285 (367)
T PF10142_consen 208 NMKANLEHQYRSYGGNWSFAFQDYYNEGITQQ--LDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYY 285 (367)
T ss_pred CcHHHHHHHHHHhCCCCccchhhhhHhCchhh--cCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHH
Confidence 43221110 0001 1211 011111111111 1223444556677999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
..|+. +..+.++|+++|.+.. .+..+.+..|+...+
T Consensus 286 d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~f~~~~~ 321 (367)
T PF10142_consen 286 DKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRAFYNRIQ 321 (367)
T ss_pred hhCCC---CeeEEeCCCCCcccch----HHHHHHHHHHHHHHH
Confidence 99975 4688999999999875 567888999988754
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-05 Score=80.19 Aligned_cols=260 Identities=15% Similarity=0.165 Sum_probs=132.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC---cceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS---QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+++.++-|.|.+++--+-. ..+.+|+ .| ..+..-.+ +...| .+..++|||.|..|+.++..
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h-------~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETH-------QINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCccccc-------ccceeeecCCCCeEEEEecC
Confidence 457888999999988753322 2445552 11 11111111 12222 23689999999999998755
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC--CceeeccCCCCCCccceEEEecCC
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg 251 (771)
...+ ++.+| |-.+..-...+-|+.|+.. |-+-. +..-.|.|+.
T Consensus 236 aqak-------------------------l~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~---------lt~g~whP~~ 280 (641)
T KOG0772|consen 236 AQAK-------------------------LLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAE---------LTCGCWHPDN 280 (641)
T ss_pred ccee-------------------------EEccC-CceeeeeeccchhhhhhhccCCceee---------eeccccccCc
Confidence 4322 12233 2222222334555655532 22222 3345799999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec----CCC--Cccccceeec
Q 004149 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TES--ISSAFFPRFS 325 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~--~~~~~~p~~S 325 (771)
+. .+.++.. .+.|.++++. +..+-.++ ... .-.+.+.+|+
T Consensus 281 k~----~FlT~s~--------------DgtlRiWdv~----------------~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 281 KE----EFLTCSY--------------DGTLRIWDVN----------------NTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred cc----ceEEecC--------------CCcEEEEecC----------------CchhheeEEeeccCCCcccCceeeecC
Confidence 98 6555422 2244455542 22221111 111 1146788999
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
|||+.||-.-.+. .|-.|+..+-.... +..+ ++...+| ..+..+.||+||++| +
T Consensus 327 rdg~~iAagc~DG-----------SIQ~W~~~~~~v~p-------~~~v----k~AH~~g---~~Itsi~FS~dg~~L-l 380 (641)
T KOG0772|consen 327 RDGKLIAAGCLDG-----------SIQIWDKGSRTVRP-------VMKV----KDAHLPG---QDITSISFSYDGNYL-L 380 (641)
T ss_pred CCcchhhhcccCC-----------ceeeeecCCccccc-------ceEe----eeccCCC---CceeEEEeccccchh-h
Confidence 9999877544332 35555542211111 0000 1111111 246788999999966 4
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecC--CCCCceeeEEeecCCEEEEEEeCC--CCCCeEEEEEe
Q 004149 406 SSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSSSP--VDVPQVKYGYF 465 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~d~~~l~~~~s~~--~~p~~l~~~~~ 465 (771)
+...++...+|-++.-..-+...+. .........|||+.+.|+.-.+.+ ..+..|++++.
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 5555666677755432221111111 111224468999988777655444 34456777764
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0002 Score=64.36 Aligned_cols=139 Identities=13% Similarity=0.104 Sum_probs=91.8
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+.....+|..+.++..+... ++.++|++||.|+.++++++.+....++++.+.+|.---... .
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~-----~--------- 100 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE-----I--------- 100 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc-----c---------
Confidence 44445788887777655542 455999999999999999998776689999999886311000 0
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
........+|.. ..++.-|.++++..+|+.++++.++.+.+++-. .++...++||....
T Consensus 101 ---------------~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~ 159 (181)
T COG3545 101 ---------------RPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAE 159 (181)
T ss_pred ---------------chhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchh
Confidence 000111111211 123346899999999999999999999998865 67788888995432
Q ss_pred --CCChHHHHHHHHHHHHH
Q 004149 752 --PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 752 --~~~~~~~~~~i~~wl~~ 768 (771)
.....+.+..+..++.+
T Consensus 160 sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 160 SGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred hcCCCcHHHHHHHHHHhhh
Confidence 23334555555555544
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=71.56 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=105.5
Q ss_pred cEEEEEcC-CCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HG-g~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
-++|++-| |++. ..-...+..|+++|+.|+.+|-+- | |. ..+...+...|+.+.+++..++- ..+
T Consensus 3 t~~v~~SGDgGw~---~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw---~~rtP~~~a~Dl~~~i~~y~~~w--~~~ 68 (192)
T PF06057_consen 3 TLAVFFSGDGGWR---DLDKQIAEALAKQGVPVVGVDSLR---Y---FW---SERTPEQTAADLARIIRHYRARW--GRK 68 (192)
T ss_pred EEEEEEeCCCCch---hhhHHHHHHHHHCCCeEEEechHH---H---Hh---hhCCHHHHHHHHHHHHHHHHHHh--CCc
Confidence 35677777 3322 122346789999999999999542 1 11 12233345788888888877763 468
Q ss_pred eEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHh
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
++.|+|+|+|+-+.-.+..+.|. +++.+++.+|......-.. ..+|. +. .... .
T Consensus 69 ~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFeih---v~~wl-----g~---------~~~~-----~ 126 (192)
T PF06057_consen 69 RVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEIH---VSGWL-----GM---------GGDD-----A 126 (192)
T ss_pred eEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEEE---hhhhc-----CC---------CCCc-----c
Confidence 99999999999888888777664 5777888777532110000 00110 00 0000 0
Q ss_pred hcCccccccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 693 SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 693 ~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
...+...+.++. .|++.++|++|.-. +...++. ..++.+..||..| |... -....+.|++-++
T Consensus 127 ~~~~~pei~~l~~~~v~CiyG~~E~d~-------~cp~l~~--~~~~~i~lpGgHH-fd~d--y~~La~~Il~~l~ 190 (192)
T PF06057_consen 127 AYPVIPEIAKLPPAPVQCIYGEDEDDS-------LCPSLRQ--PGVEVIALPGGHH-FDGD--YDALAKRILDALK 190 (192)
T ss_pred cCCchHHHHhCCCCeEEEEEcCCCCCC-------cCccccC--CCcEEEEcCCCcC-CCCC--HHHHHHHHHHHHh
Confidence 011223344554 58999999988642 1122433 3478889988544 5422 2344455555443
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0015 Score=65.23 Aligned_cols=222 Identities=16% Similarity=0.145 Sum_probs=124.5
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec
Q 004149 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS 131 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~ 131 (771)
++.-|+|..+-. .++++++.. .+...+....+ ...---..-+|||||++|+.+.+.-+....++-+|+
T Consensus 16 ~~~avafaRRPG--------~~~~v~D~~--~g~~~~~~~a~--~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 16 RPEAVAFARRPG--------TFALVFDCR--TGQLLQRLWAP--PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred CCeEEEEEeCCC--------cEEEEEEcC--CCceeeEEcCC--CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 666777765432 366666653 22333222222 111113468999999988555444335556777773
Q ss_pred -CCcceEEEecCC---cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004149 132 -QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 132 -~~~~~~~~~~~~---~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
....+++-..+. +.| .+.|.|||+.|+.. +......+.. ++
T Consensus 84 ~~~~~~ri~E~~s~GIGPH----------el~l~pDG~tLvVA-NGGI~Thpd~-------GR----------------- 128 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPH----------ELLLMPDGETLVVA-NGGIETHPDS-------GR----------------- 128 (305)
T ss_pred CcCCcEEEeEecCCCcChh----------hEEEcCCCCEEEEE-cCCCccCccc-------Cc-----------------
Confidence 334555544432 333 78899999888764 3221111100 00
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCC---CCCccceEEEecCCCCCccEEEEEe-ecCcceeeeeeeeccCCceeE
Q 004149 208 WGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLHQYLVFVG-WSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~---~~~~~~~~~wspDg~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~ 283 (771)
.++.....++.|..+|..+|++..--..+ ...++..++|.+||. ++|.. ++..+. ....-|.
T Consensus 129 -~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-----V~~a~Q~qg~~~--------~~~PLva 194 (305)
T PF07433_consen 129 -AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-----VAFAMQYQGDPG--------DAPPLVA 194 (305)
T ss_pred -eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-----EEEEEecCCCCC--------ccCCeEE
Confidence 01122335689999999999853321022 345899999999997 55543 333221 1122344
Q ss_pred EEecccccchhhhhhhhcCCCCCCcceecC-------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 284 AVRVSLYKSEASELELKESSSEDLPVVNLT-------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+++. ++..+.+. .-.+.+.++++++||..|+..+.+. ..+.+||.
T Consensus 195 ~~~~------------------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG----------g~~~~~d~ 246 (305)
T PF07433_consen 195 LHRR------------------GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG----------GRVAVWDA 246 (305)
T ss_pred EEcC------------------CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC----------CEEEEEEC
Confidence 4442 22222222 1235688999999999998888763 45777888
Q ss_pred CCCCCC
Q 004149 357 PTNGNF 362 (771)
Q Consensus 357 ~~~~~~ 362 (771)
.++...
T Consensus 247 ~tg~~~ 252 (305)
T PF07433_consen 247 ATGRLL 252 (305)
T ss_pred CCCCEe
Confidence 887753
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00011 Score=69.57 Aligned_cols=215 Identities=12% Similarity=0.067 Sum_probs=115.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCC-Ce--EEEEecC------CcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 100 GASAVVPSPSGSKLLVVRNPENES-PI--QFELWSQ------SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~-~~--~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+....||++|.++++..+..-+. +. ++.+... .++...+..+... ....-|+|-|+.|++.
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk---------it~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK---------ITSALWGPLGETIIAG 165 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc---------eeeeeecccCCEEEEe
Confidence 467788999999999987654232 22 3333311 1222223222221 1477899999999885
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
- ....|-.||+.+|+...-........+.+..+|||
T Consensus 166 h--------------------------------------------e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 166 H--------------------------------------------EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred c--------------------------------------------CCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 2 33678899999885443322334457889999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE
Q 004149 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
... .+..+ ++..-.++|. .+-++..-......+...++||--..
T Consensus 202 ~T~----FiT~s---------------~Dttakl~D~-----------------~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 202 RTY----FITGS---------------KDTTAKLVDV-----------------RTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cce----EEecc---------------cCccceeeec-----------------cceeeEEEeeecccccceecccccce
Confidence 986 55444 2223344454 33333222233445677889998777
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
++.....++ +|+.+...+. ..-......++-.++-+...|.+ .-+.+++++|||+ .|.+...+
T Consensus 246 VilgGGqeA--------------~dVTTT~~r~-GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGk-sYsSGGED 308 (327)
T KOG0643|consen 246 VILGGGQEA--------------MDVTTTSTRA-GKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGK-SYSSGGED 308 (327)
T ss_pred EEecCCcee--------------eeeeeecccc-cchhhhHHHHHHHHHhccccccc-cCcceeEECCCCc-ccccCCCC
Confidence 766543321 2222211110 00000000001011111122211 2367899999998 66666667
Q ss_pred CeeEEEEEEC
Q 004149 411 SSQVIISVNV 420 (771)
Q Consensus 411 ~~~~l~~~d~ 420 (771)
+..+|..++.
T Consensus 309 G~VR~h~Fd~ 318 (327)
T KOG0643|consen 309 GYVRLHHFDS 318 (327)
T ss_pred ceEEEEEecc
Confidence 7777776653
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0011 Score=67.72 Aligned_cols=190 Identities=16% Similarity=0.102 Sum_probs=98.5
Q ss_pred eEEEEEccCCce-eeccCCCC---CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 219 SLFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 219 ~l~v~d~~~~~~-~~l~~~~~---~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.+++++++.+.. +.+..... ..........|||. ++|....... .+... ......||+++.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p------- 150 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP------- 150 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC-------
Confidence 345555555554 44421111 12455678899987 8887643100 11110 012237999995
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.++..+.+..........+|||||++|++..... ..|+++++..... .+... . ..
T Consensus 151 ----------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g-~~~~~-~---~~ 205 (307)
T COG3386 151 ----------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATG-PIGGR-R---GF 205 (307)
T ss_pred ----------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccC-ccCCc-c---eE
Confidence 4455555555466678899999999998887653 5799998864111 11110 0 00
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEE-eecCCEEEEEEeC
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSS 453 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~-s~d~~~l~~~~s~ 453 (771)
+... ..+| .....+.-.||. |+.... .+...+-+++.+...+..+..+......+.| .++.+.|+.++..
T Consensus 206 ~~~~---~~~G----~PDG~~vDadG~-lw~~a~-~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 206 VDFD---EEPG----LPDGMAVDADGN-LWVAAV-WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEcc---CCCC----CCCceEEeCCCC-EEEecc-cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 1000 0111 122344445554 433332 2224566677774445555444233333444 4567788777766
Q ss_pred CCCC
Q 004149 454 PVDV 457 (771)
Q Consensus 454 ~~~p 457 (771)
...+
T Consensus 277 ~~~~ 280 (307)
T COG3386 277 SGMS 280 (307)
T ss_pred CCCC
Confidence 6554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00036 Score=67.77 Aligned_cols=235 Identities=15% Similarity=0.147 Sum_probs=126.9
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCccc
Q 004149 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH 146 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 146 (771)
...+.+..||+.+-+ -.+-| ......+...+||+||++|+..+... ...+| ..|...+.+.++..+
T Consensus 42 c~nG~vvI~D~~T~~-iar~l-----saH~~pi~sl~WS~dgr~LltsS~D~-----si~lwDl~~gs~l~rirf~spv- 109 (405)
T KOG1273|consen 42 CANGRVVIYDFDTFR-IARML-----SAHVRPITSLCWSRDGRKLLTSSRDW-----SIKLWDLLKGSPLKRIRFDSPV- 109 (405)
T ss_pred ccCCcEEEEEccccc-hhhhh-----hccccceeEEEecCCCCEeeeecCCc-----eeEEEeccCCCceeEEEccCcc-
Confidence 444566666664432 11222 22234588899999999998766543 34444 334455555554444
Q ss_pred ccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004149 147 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 147 g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
....|.|-.+..+.+.-.. ..-+++++.
T Consensus 110 ---------~~~q~hp~k~n~~va~~~~-------------------------------------------~sp~vi~~s 137 (405)
T KOG1273|consen 110 ---------WGAQWHPRKRNKCVATIME-------------------------------------------ESPVVIDFS 137 (405)
T ss_pred ---------ceeeeccccCCeEEEEEec-------------------------------------------CCcEEEEec
Confidence 4778888655444433221 123445554
Q ss_pred CCceeeccCCCCC----CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004149 227 SGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 227 ~~~~~~l~~~~~~----~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
.++-+.|. ...+ .......|.+-|+. |+... ..+.|..+|.
T Consensus 138 ~~~h~~Lp-~d~d~dln~sas~~~fdr~g~y----IitGt---------------sKGkllv~~a--------------- 182 (405)
T KOG1273|consen 138 DPKHSVLP-KDDDGDLNSSASHGVFDRRGKY----IITGT---------------SKGKLLVYDA--------------- 182 (405)
T ss_pred CCceeecc-CCCccccccccccccccCCCCE----EEEec---------------CcceEEEEec---------------
Confidence 45444442 1111 12222357777885 55432 2235667775
Q ss_pred CCCCCcce---ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC---C-CCCCCCc--cceeeEEe
Q 004149 303 SSEDLPVV---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP---T-NGNFSSL--EKIVDVIP 373 (771)
Q Consensus 303 ~~~~~~~~---~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~---~-~~~~~~~--~~~~~~~~ 373 (771)
.+-+++ +++. -..+.+..+|-.|+.|++...+. -|..+++. . |....+. ....+++.
T Consensus 183 --~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-----------vIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 183 --ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-----------VIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred --chheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-----------eEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 443322 2222 23477889999999998887664 24455432 1 1111111 01111111
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
-. .=...+||.||.+++..+ .....||.+....|.+.++..+.
T Consensus 249 k~--------------~Wk~ccfs~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 249 KL--------------QWKKCCFSGDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred hh--------------hhhheeecCCccEEEecc--ccceeEEEEecCCcceeeeecCC
Confidence 00 012567899999876655 34456999999999999887654
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.6e-05 Score=75.34 Aligned_cols=210 Identities=13% Similarity=0.091 Sum_probs=111.3
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcE----EEEECCCCCCCCChhhh--------hcCCC-Cc---cccchhh
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYS----LLIVNYRGSLGFGEEAL--------QSLPG-KV---GSQDVND 599 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~----V~~~d~rG~~~~g~~~~--------~~~~~-~~---~~~~~~D 599 (771)
.-..||+||..++ ...+...+..+. +.|.+ ++.++.-|.-.+...+. +-... +. ......=
T Consensus 11 ~tPTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~w 88 (255)
T PF06028_consen 11 TTPTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKW 88 (255)
T ss_dssp -EEEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHH
T ss_pred CCcEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHH
Confidence 3457899996655 557888888886 66642 44444444221111110 00011 11 1122445
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004149 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
+..++.+|.++..+ +++-++||||||..++.++..+.. .+..+|.+++.++-..... ..... ...
T Consensus 89 l~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~--~~~~~---~~~--- 158 (255)
T PF06028_consen 89 LKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMN--DDQNQ---NDL--- 158 (255)
T ss_dssp HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCS--C-TTT---T-C---
T ss_pred HHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccccc--ccchh---hhh---
Confidence 66778888888654 689999999999999999887521 3555665555444221100 00000 000
Q ss_pred CCCcCCCCCC--hhhHHHHhhcCccccccCCCCcEEEEeeC------CCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--
Q 004149 675 GKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN-- 744 (771)
Q Consensus 675 ~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-- 744 (771)
....|. ......+...- ...+ .-.+.+|-|.|. .|..||...+..+...++......+-..+.|
T Consensus 159 ----~~~gp~~~~~~y~~l~~~~-~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~ 232 (255)
T PF06028_consen 159 ----NKNGPKSMTPMYQDLLKNR-RKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKD 232 (255)
T ss_dssp ----STT-BSS--HHHHHHHHTH-GGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGG
T ss_pred ----cccCCcccCHHHHHHHHHH-HhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCC
Confidence 000011 11111111110 0111 123679999998 8999999999988888877666666666655
Q ss_pred CCccCCCCCChHHHHHHHHHHH
Q 004149 745 DVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl 766 (771)
+.|.-. +++. ++.+.|..||
T Consensus 233 a~HS~L-heN~-~V~~~I~~FL 252 (255)
T PF06028_consen 233 AQHSQL-HENP-QVDKLIIQFL 252 (255)
T ss_dssp GSCCGG-GCCH-HHHHHHHHHH
T ss_pred CccccC-CCCH-HHHHHHHHHh
Confidence 578654 3443 6777777776
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=77.40 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=85.6
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..|-+||+.+++.+.-. ......+.+++|||||++ ++.+. .+..|+++..
T Consensus 698 yd~Ti~lWDl~~~~~~~~l-~gHtdqIf~~AWSpdGr~----~AtVc---------------KDg~~rVy~P-------- 749 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRL-VGHTDQIFGIAWSPDGRR----IATVC---------------KDGTLRVYEP-------- 749 (1012)
T ss_pred ccceeeeeehhhhhhhhee-ccCcCceeEEEECCCCcc----eeeee---------------cCceEEEeCC--------
Confidence 4578999999988754321 344557889999999999 99886 3346777764
Q ss_pred hhhhhcCCCCCCcceecCCCCc----cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 296 ELELKESSSEDLPVVNLTESIS----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~----~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.++ .+++.+..+ ......|.=||+.|+....+. .+..+|-+||.++-....+....-++
T Consensus 750 ---------rs~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 750 ---------RSR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK-------SSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ---------CCC-CCccccCCCCccCcceeEEEEecCcEEEEecccc-------cchhhhhhhhhhhccCCcceeeeecc
Confidence 222 233433332 245678999999998887765 34567888887654433332222111
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
.+ +.--+.+-+|...|+++.-.+....+|.
T Consensus 813 ap----------------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 813 AP----------------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred cC----------------ccccccccCCCceEEEecCCCceEEEEE
Confidence 11 1223445678887766554333333443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00079 Score=70.63 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=89.6
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccce
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 322 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p 322 (771)
+..|.+-|.. |+..+..+. .+.+-. +-....||.+++ ++..+ +.| ...+.+.+.
T Consensus 222 qm~WN~~gt~----LLvLastdV-Dktn~S--YYGEq~Lyll~t-----------------~g~s~~V~L-~k~GPVhdv 276 (566)
T KOG2315|consen 222 QMKWNKLGTA----LLVLASTDV-DKTNAS--YYGEQTLYLLAT-----------------QGESVSVPL-LKEGPVHDV 276 (566)
T ss_pred EEEeccCCce----EEEEEEEee-cCCCcc--ccccceEEEEEe-----------------cCceEEEec-CCCCCceEE
Confidence 6789999988 766543221 122222 235568999997 53333 333 346778999
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
.|||+|+.++.+..-- ...+-++|+...-...+.++. ...+-|+|.|+.
T Consensus 277 ~W~~s~~EF~VvyGfM---------PAkvtifnlr~~~v~df~egp----------------------RN~~~fnp~g~i 325 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFM---------PAKVTIFNLRGKPVFDFPEGP----------------------RNTAFFNPHGNI 325 (566)
T ss_pred EECCCCCEEEEEEecc---------cceEEEEcCCCCEeEeCCCCC----------------------ccceEECCCCCE
Confidence 9999999887665321 234566666553221111111 124569999998
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCC
Q 004149 403 MLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~d~~~l~~~~s~~ 454 (771)
|++..-..=...+-.+|+.+ .+.|.... .+.....|+|||.+++.+..+|
T Consensus 326 i~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred EEEeecCCCCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 77765433223344446655 33333322 2345678999999998776543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0001 Score=75.63 Aligned_cols=214 Identities=11% Similarity=0.088 Sum_probs=127.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcc--ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEE--ecCCcc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPV--EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF--HVPQTV 145 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~--~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 145 (771)
.++.+.+|++...+.+. .+ +.+++ ..+.+..-..+|||+.|+.-.+ ...+.||+-......+ .++...
T Consensus 438 GkgcVKVWdis~pg~k~-Pv--sqLdcl~rdnyiRSckL~pdgrtLivGGe-----astlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKS-PV--SQLDCLNRDNYIRSCKLLPDGRTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred CCCeEEEeeccCCCCCC-cc--ccccccCcccceeeeEecCCCceEEeccc-----cceeeeeeccCCCcchhhhcCCcc
Confidence 44566777775554321 11 11111 2245777889999999976432 3355666322221111 111110
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004149 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
. ....++.|||.| |.|......+- ..|+.-.......++.+..-..-+..+.|+-.++++.-++.+.-||+
T Consensus 510 p-------aCyALa~spDak-vcFsccsdGnI-~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 510 P-------ACYALAISPDAK-VCFSCCSDGNI-AVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred h-------hhhhhhcCCccc-eeeeeccCCcE-EEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 0 114778999986 77765433221 13443222222233333333334456777667777888899999999
Q ss_pred cCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004149 226 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
..+...+- ..-...+.++..+|.|.+ |+..- .+++++++.. .
T Consensus 581 regrqlqq--hdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~-----------------s 622 (705)
T KOG0639|consen 581 REGRQLQQ--HDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT-----------------S 622 (705)
T ss_pred hhhhhhhh--hhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec-----------------C
Confidence 87643222 233446788899999999 87653 3457888875 5
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+.-+|.-+...+.+..|++-|++++-+..++
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchh
Confidence 556677888888899999999999877666554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0004 Score=69.52 Aligned_cols=175 Identities=17% Similarity=0.101 Sum_probs=97.7
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
..+++|+||+.+|++.... ....|++....+.....+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~~~~~~~-- 63 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGGPVRPVL-- 63 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCCcceeec--
Confidence 5899999999999997221 346888887654433333
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
.. .....|+|+++|. +.++...... ..++..+.. .......+...
T Consensus 64 -~g-~~l~~PS~d~~g~-----~W~v~~~~~~------------~~~~~~~~~----------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 64 -TG-GSLTRPSWDPDGW-----VWTVDDGSGG------------VRVVRDSAS----------------GTGEPVEVDWP 108 (253)
T ss_pred -cC-CccccccccCCCC-----EEEEEcCCCc------------eEEEEecCC----------------CcceeEEeccc
Confidence 22 2677899999965 5555421111 122221110 11222223222
Q ss_pred C--ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC--C-CCCCccceeeEEecccccCCCCCcccccCC
Q 004149 316 I--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN--G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 316 ~--~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
. ..+.+.++||||.+++++..... ..+|++.-+..+ + ...+.... .+ ... . ...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~~--------~~~v~va~V~r~~~g~~~~l~~~~-~~---~~~----~-----~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDGG--------GGRVYVAGVVRDGDGVPRRLTGPR-RV---APP----L-----LSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecCC--------CCeEEEEEEEeCCCCCcceeccce-Ee---ccc----c-----cCc
Confidence 1 16889999999999999997751 356777655322 2 11221111 10 000 0 012
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
...+.|++++..+++....+..... .+..+++..+.+..
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~ 206 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPS 206 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCC
Confidence 4578999999755555444443333 46666777777733
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-05 Score=77.06 Aligned_cols=278 Identities=12% Similarity=0.056 Sum_probs=150.1
Q ss_pred CCcc--eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 51 GNGT--QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 51 ~dg~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++|+ -+.|..+...|.++.....|.+|++..+..... +.+....+.+....+-++++.++-.++. +..++|.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----~tLaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wn 247 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI----STLAGSLGNITSIDFDSDNKHVIAASND--KNLRLWN 247 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh----hhhhccCCCcceeeecCCCceEEeecCC--Cceeeee
Confidence 4454 344555555677777777777776644432222 2233344678899999999988654433 4445555
Q ss_pred EecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004149 129 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
++.......++ +..++| .++.|.-....++-.+.+.+.+ .|+.......+.. ...+....++..+
T Consensus 248 vd~~r~~~TLs----GHtdkV------t~ak~~~~~~~vVsgs~DRtiK--~WDl~k~~C~kt~-l~~S~cnDI~~~~-- 312 (459)
T KOG0288|consen 248 VDSLRLRHTLS----GHTDKV------TAAKFKLSHSRVVSGSADRTIK--LWDLQKAYCSKTV-LPGSQCNDIVCSI-- 312 (459)
T ss_pred ccchhhhhhhc----ccccce------eeehhhccccceeeccccchhh--hhhhhhhheeccc-cccccccceEecc--
Confidence 54221111111 122222 4666666665555555555443 3332111111000 0011111111110
Q ss_pred CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 209 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
-....+.....|..||..++..+.. .+....+.++..++||.. |...+ ++..|-++|+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl- 370 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL- 370 (459)
T ss_pred eeeeecccccceEEEeccCCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec-
Confidence 0011122345689999888877666 566668899999999998 77655 3335667776
Q ss_pred cccchhhhhhhhcCCCCCCcceecC-CCC----ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 289 LYKSEASELELKESSSEDLPVVNLT-ESI----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~lt-~~~----~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.+.+++... ... .......|||||++++-.+.+ ..||+|++.+++...
T Consensus 371 ----------------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 371 ----------------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEK 423 (459)
T ss_pred ----------------ccccEEEEeeccccccccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEE
Confidence 444444332 221 125668999999998876655 359999998887532
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+.. ..... + .+....|.|-|+.|+-. +......||
T Consensus 424 ~l~----------~s~s~--~-----aI~s~~W~~sG~~Llsa-dk~~~v~lW 458 (459)
T KOG0288|consen 424 VLS----------LSTSN--A-----AITSLSWNPSGSGLLSA-DKQKAVTLW 458 (459)
T ss_pred Eec----------cCCCC--c-----ceEEEEEcCCCchhhcc-cCCcceEec
Confidence 211 11111 1 24567899999877533 333333444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00018 Score=73.86 Aligned_cols=226 Identities=13% Similarity=0.108 Sum_probs=138.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+-+.++|-.-+.+ |+. ....+.||+ .+....+.+++.-. -|..+.....+|||+.|+...+
T Consensus 422 VcAvtIS~~trhV-yTg-----GkgcVKVWdis~pg~k~PvsqLdcl~-----rdnyiRSckL~pdgrtLivGGe----- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHV-YTG-----GKGCVKVWDISQPGNKSPVSQLDCLN-----RDNYIRSCKLLPDGRTLIVGGE----- 485 (705)
T ss_pred EEEEEecCCccee-Eec-----CCCeEEEeeccCCCCCCccccccccC-----cccceeeeEecCCCceEEeccc-----
Confidence 4567778777766 432 222455552 23333333322110 1223468889999999988532
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~ 256 (771)
...|-+||+....++.-..++ .......++.|||.+
T Consensus 486 ---------------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDak---- 522 (705)
T KOG0639|consen 486 ---------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK---- 522 (705)
T ss_pred ---------------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc----
Confidence 267889999877654431122 222344678999998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+.|.. |.+. .|.++||- +-..++++..+...+.....|+||.+|....-
T Consensus 523 -vcFsc------------csdG--nI~vwDLh----------------nq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 523 -VCFSC------------CSDG--NIAVWDLH----------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred -eeeee------------ccCC--cEEEEEcc----------------cceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 88887 4443 56777771 33456778777777889999999999864333
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+ +.+..||+..+...+- -+| ...+.++..+|.+.+|++-.. +.+++
T Consensus 572 D-----------ntvRcWDlregrqlqq----------------hdF----~SQIfSLg~cP~~dWlavGMe---ns~ve 617 (705)
T KOG0639|consen 572 D-----------NTVRCWDLREGRQLQQ----------------HDF----SSQIFSLGYCPTGDWLAVGME---NSNVE 617 (705)
T ss_pred c-----------cceeehhhhhhhhhhh----------------hhh----hhhheecccCCCccceeeecc---cCcEE
Confidence 3 4578888876543211 011 124567778899998876543 23456
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004149 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~ 450 (771)
.+.....+..+|....+-+-..-|++.|++++-+
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeec
Confidence 6666555666777666544445678888876644
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=89.46 Aligned_cols=126 Identities=23% Similarity=0.263 Sum_probs=82.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cc--hHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCCccccc
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~--~~~~~~la~~G~~V~~~d~rG-~~~~g~~~~~~~~~~~~~~~ 596 (771)
+..-+|.|......+ .|++|++|||+...... .+ ......+..+..+|+.++||- .-|+....-...++++ .
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~---g 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNL---G 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcc---c
Confidence 445688887432222 89999999987654332 12 223334556689999999993 2222221111123443 3
Q ss_pred hhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCc
Q 004149 597 VNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 650 (771)
Q Consensus 597 ~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~ 650 (771)
..|+..|++|+.++ ..-|+++|.|+|||.||..+..++... ..+|..+|..++.
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 67999999999875 336999999999999999998776531 2467667766654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00042 Score=76.04 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=67.9
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
-++.|+.+ +-++....+..+.+|++...+...+ ......++.++|.|-..+ +|++- | -+
T Consensus 373 LDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr-----yFiSG-----------S--LD 431 (712)
T KOG0283|consen 373 LDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR-----YFISG-----------S--LD 431 (712)
T ss_pred eecccccC-CeeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC-----cEeec-----------c--cc
Confidence 34456655 4566666778999999998888777 667778999999996654 24331 1 23
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+.|.++++ ...++.--++-...+....|+|||+..+..+..
T Consensus 432 ~KvRiWsI-----------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 432 GKVRLWSI-----------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred cceEEeec-----------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 35666665 334444444445568899999999987766654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.019 Score=69.39 Aligned_cols=133 Identities=13% Similarity=0.099 Sum_probs=69.1
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE-EecccccCCCCCc-ccccCCCCCCcc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV-IPVVQCAEGDCFP-GLYSSSILSNPW 396 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~-g~~~~~~~~~~~ 396 (771)
....+|+|||++|++.... ..+|.++|+.+++...+..+.... .........+... ...-..+..+++
T Consensus 742 P~GIavspdG~~LYVADs~----------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav 811 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC 811 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence 4567899999988766543 357999998876532111100000 0000000000000 000013456788
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--------------CceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004149 397 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 397 s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--------------~~~~~~~s~d~~~l~~~~s~~~~p~~l~~ 462 (771)
++||. ||++.. ....|..+|.+++.+..+..... ......++++|+ ++++. + ...+|.+
T Consensus 812 d~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD-t--~Nn~Irv 884 (1057)
T PLN02919 812 AKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD-T--NNSLIRY 884 (1057)
T ss_pred eCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE-C--CCCEEEE
Confidence 99997 655543 34567778988888776643210 122346777775 44433 2 2235777
Q ss_pred EEeccc
Q 004149 463 GYFVDK 468 (771)
Q Consensus 463 ~~~~~~ 468 (771)
+++.++
T Consensus 885 id~~~~ 890 (1057)
T PLN02919 885 LDLNKG 890 (1057)
T ss_pred EECCCC
Confidence 776554
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.2e-05 Score=75.09 Aligned_cols=270 Identities=12% Similarity=0.094 Sum_probs=144.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+..+.|-++...++-. +...++.+| ..+....+...-.+.. +.+..+.+.+|+++++-.+.+...+
T Consensus 176 gev~~v~~l~~sdtlatg-----g~Dr~Ik~W~v~~~k~~~~~tLaGs~------g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATG-----GSDRIIKLWNVLGEKSELISTLAGSL------GNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred cccceeEEccCcchhhhc-----chhhhhhhhhcccchhhhhhhhhccC------CCcceeeecCCCceEEeecCCCcee
Confidence 556777888876666542 344466677 2232211111111222 2236889999999988877666433
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|+.........+..+....-...|...-...+.+..+.+|-.||+..+...+-. .+.. ....+.-+ ..
T Consensus 245 --~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S-~cnDI~~~---~~---- 313 (459)
T KOG0288|consen 245 --LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGS-QCNDIVCS---IS---- 313 (459)
T ss_pred --eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-cccc-cccceEec---ce----
Confidence 3443222222222222222211112211111334445667788888775543321 2222 22233333 11
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.++.+ .....|..+|. .++..++-.+..+.+.+...|+||..|...+.+
T Consensus 314 ~~~Sg--------------H~DkkvRfwD~-----------------Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 314 DVISG--------------HFDKKVRFWDI-----------------RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeeec--------------ccccceEEEec-----------------cCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 33332 12235777776 555555555556678999999999998777655
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC-CCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+ .|-++|+.+.+.+...... |..+. .....+||||+.+++.- +. ...+|
T Consensus 363 d-----------tl~viDlRt~eI~~~~sA~----------------g~k~asDwtrvvfSpd~~YvaAG-S~--dgsv~ 412 (459)
T KOG0288|consen 363 D-----------TLKVIDLRTKEIRQTFSAE----------------GFKCASDWTRVVFSPDGSYVAAG-SA--DGSVY 412 (459)
T ss_pred C-----------ceeeeecccccEEEEeecc----------------ccccccccceeEECCCCceeeec-cC--CCcEE
Confidence 4 3778888776543321111 11111 23567899999966533 32 34567
Q ss_pred EEECCCCcEEEecCCCC---CceeeEEeecCCEEEEEE
Q 004149 417 SVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~---~~~~~~~s~d~~~l~~~~ 451 (771)
.+++.+|+++....... .+....|++.|..++.+.
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 77888999887754433 244567777777766543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00036 Score=75.27 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=100.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
........+||++.|+.+.+. ++..+| ..+...+..-. .| .++.-...|+|.|..|+-..-+..
T Consensus 63 d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswKa---~H-----e~Pvi~ma~~~~g~LlAtggaD~~- 128 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWKA---IH-----EAPVITMAFDPTGTLLATGGADGR- 128 (775)
T ss_pred hhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHhh---cc-----CCCeEEEEEcCCCceEEeccccce-
Confidence 456788999999988776443 477777 44433333222 11 011246789999976666544432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCc--ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE--TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~--~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
.+.|+.........++.+........|.++|.. ++++..+..+++||+.++..-..+-......+.+..+++|+..
T Consensus 129 -v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~- 206 (775)
T KOG0319|consen 129 -VKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE- 206 (775)
T ss_pred -EEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce-
Confidence 346665555555666666666667778888753 4566678899999998665411111334456889999999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
+++++ |+.-++++|+
T Consensus 207 ---~ls~~---------------RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 ---LLSVG---------------RDKVIIVWDL 221 (775)
T ss_pred ---EEEec---------------cCcEEEEeeh
Confidence 88887 4457888887
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0022 Score=69.55 Aligned_cols=271 Identities=11% Similarity=0.066 Sum_probs=147.3
Q ss_pred CccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 94 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 94 ~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
++.....+....+|.|...++-.++ .-+.+|+ ..+..+.+.+. .+ -+..|=|.++.|+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t~kciRTi~~~-y~----------l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDTLKCIRTITCG-YI----------LASKFVPGDRYIVLGT 431 (888)
T ss_pred eccchhheeEEEeecCceeeeecCC------CcEEEEEccCcceeEEeccc-cE----------EEEEecCCCceEEEec
Confidence 3445567889999988766543222 2366773 23333333322 22 3777889888887765
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-----CCceee-cc-----CCCCCC
Q 004149 172 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-----SGEVQA-VK-----GIPKSL 240 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-----~~~~~~-l~-----~~~~~~ 240 (771)
..+... .++............+..-.......+|....+++..+..+-.||.. .|..++ |. -..-+.
T Consensus 432 k~Gel~--vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 432 KNGELQ--VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred cCCceE--EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 443211 12211111111111222223344456665555566667777777653 122211 10 011122
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+-.+.+||||+. |+..- .+....||.+|- =.=...|..+.-.+.
T Consensus 510 dvL~v~~Spdgk~----LaVsL-------------LdnTVkVyflDt------------------lKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 510 DVLCVSVSPDGKL----LAVSL-------------LDNTVKVYFLDT------------------LKFFLSLYGHKLPVL 554 (888)
T ss_pred cEEEEEEcCCCcE----EEEEe-------------ccCeEEEEEecc------------------eeeeeeeccccccee
Confidence 4567899999997 77654 344458888872 223455677777889
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
+...|||++.|+..+.+.. +.+|-++=|.-..-.-. +..++..+.|.|+.
T Consensus 555 smDIS~DSklivTgSADKn-----------VKiWGLdFGDCHKS~fA-------------------HdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKN-----------VKIWGLDFGDCHKSFFA-------------------HDDSVMSVQFLPKT 604 (888)
T ss_pred EEeccCCcCeEEeccCCCc-----------eEEeccccchhhhhhhc-------------------ccCceeEEEEcccc
Confidence 9999999999988877652 44444444443221111 11245667788865
Q ss_pred CEEEEEeeeCCeeEEEEEECCCC-cEEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 401 CTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg-~~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.++|+...++...-| |-+.= .++.+......+.-.+.+|+|+.++-.+
T Consensus 605 -~~FFt~gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 605 -HLFFTCGKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred -eeEEEecCcceEEee--chhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 588888766554444 42221 2333333333444456778888665433
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.002 Score=66.81 Aligned_cols=180 Identities=15% Similarity=0.078 Sum_probs=105.9
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.++.+..+.+.... +--.....++-|.+.|+. |.+....+. +.+-. +-..+.||++++
T Consensus 202 a~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~----ll~l~~t~~--ksnKs--yfgesnLyl~~~---------- 262 (561)
T COG5354 202 AMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKY----LLVLVMTHT--KSNKS--YFGESNLYLLRI---------- 262 (561)
T ss_pred cEEEEEEccCCCeeeee-eeEeecccEEEEecCCce----EEEEEEEee--ecccc--eeccceEEEEee----------
Confidence 45666666554443331 223445668899999998 888764332 11111 123468999998
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004149 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
....++......+.+.+..|+|+++.++.++.-. ...+-.+|+.++-...+.++
T Consensus 263 -------~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~---------pa~~s~~~lr~Nl~~~~Pe~---------- 316 (561)
T COG5354 263 -------TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM---------PASVSVFDLRGNLRFYFPEQ---------- 316 (561)
T ss_pred -------cccccceeccccccceeeeecccCCceeEEeccc---------ccceeecccccceEEecCCc----------
Confidence 4333333324466788999999999999888322 23456666665411111111
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
--..+.|||.++++++..-..-...+-.++..+ +...+ .......+..-|+||+..+.....++.
T Consensus 317 ------------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~-rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 317 ------------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG-RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ------------ccccccccCcccEEEEecCCccccceEEeccCC-ceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 123567999999998866544444566667644 44444 223334466789999987665554443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00017 Score=72.40 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=95.2
Q ss_pred CccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCC----cc-----cccc-cCCCcccceeecCC
Q 004149 94 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ----TV-----HGSV-YADGWFEGISWNSD 163 (771)
Q Consensus 94 ~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~g~~-~~~~~~~~~~wSpD 163 (771)
+......+....|||+|..||-..+.+ ...+|..+. .+.++... .. +... .-......++||||
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~~-~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGG-----EVFLWKQGD-VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCc-----eEEEEEecC-cCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 333445688899999999998654332 455662221 11100000 00 0000 00122358899999
Q ss_pred CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccc
Q 004149 164 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 243 (771)
Q Consensus 164 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~ 243 (771)
+..+++.+ ..+.+++||+..|.+..+. -.....+.
T Consensus 135 ~~~l~s~s--------------------------------------------~dns~~l~Dv~~G~l~~~~-~dh~~yvq 169 (434)
T KOG1009|consen 135 SNFLVSGS--------------------------------------------VDNSVRLWDVHAGQLLAIL-DDHEHYVQ 169 (434)
T ss_pred Cceeeeee--------------------------------------------ccceEEEEEeccceeEeec-cccccccc
Confidence 99888854 3478899999999887763 34556788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc---ccc
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAF 320 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~---~~~ 320 (771)
.++|.|-++. |+..+....++..+. +-...++.+..+ .+..+.....-+...+|..+.. ..+
T Consensus 170 gvawDpl~qy----v~s~s~dr~~~~~~~----~~~~~~~~~~~~-------~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 170 GVAWDPLNQY----VASKSSDRHPEGFSA----KLKQVIKRHGLD-------IMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eeecchhhhh----hhhhccCcccceeee----eeeeeeeeeeee-------EeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999887 776553221111111 111123332210 0111111112233445554332 367
Q ss_pred ceeecCCCCEEEEE
Q 004149 321 FPRFSPDGKFLVFL 334 (771)
Q Consensus 321 ~p~~SpDG~~l~f~ 334 (771)
.++|||||..|+--
T Consensus 235 RlsfTPdG~llvtP 248 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTP 248 (434)
T ss_pred hcccCCCCcEEEcc
Confidence 79999999976643
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=68.20 Aligned_cols=134 Identities=7% Similarity=0.084 Sum_probs=86.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.+||..+|+..+- +.-...+.++..|+||+ |+.++. .+.|--+|.
T Consensus 165 ~tVRLWD~rTgt~v~s--L~~~s~VtSlEvs~dG~-----ilTia~---------------gssV~Fwda---------- 212 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQS--LEFNSPVTSLEVSQDGR-----ILTIAY---------------GSSVKFWDA---------- 212 (334)
T ss_pred CceEEEEeccCcEEEE--EecCCCCcceeeccCCC-----EEEEec---------------CceeEEecc----------
Confidence 5788999999987665 45556788999999999 555541 124555664
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004149 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
.+-....-..-+..+.+.+.+|+-. ++....+ ...+|++|..+++.+..-
T Consensus 213 -------ksf~~lKs~k~P~nV~SASL~P~k~-~fVaGge----------d~~~~kfDy~TgeEi~~~------------ 262 (334)
T KOG0278|consen 213 -------KSFGLLKSYKMPCNVESASLHPKKE-FFVAGGE----------DFKVYKFDYNTGEEIGSY------------ 262 (334)
T ss_pred -------ccccceeeccCccccccccccCCCc-eEEecCc----------ceEEEEEeccCCceeeec------------
Confidence 2222211122344578889999874 3333322 356899999998864331
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
..+.|. -+..+.|||||. ++.+.+.++..+||....
T Consensus 263 -nkgh~g-----pVhcVrFSPdGE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 263 -NKGHFG-----PVHCVRFSPDGE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred -ccCCCC-----ceEEEEECCCCc-eeeccCCCceEEEEEecC
Confidence 001111 234567999997 888888999999998765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0053 Score=62.46 Aligned_cols=206 Identities=14% Similarity=0.155 Sum_probs=124.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....++|+-..++..+... ++.+|. .. ....+... | ++....++-.|.|++|+..++++
T Consensus 262 kki~~v~~~~~~~~v~~aSad~-----~i~vws~~~~s~~~~~~~----h-----~~~V~~ls~h~tgeYllsAs~d~-- 325 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADE-----IIRVWSVPLSSEPTSSRP----H-----EEPVTGLSLHPTGEYLLSASNDG-- 325 (506)
T ss_pred eEEEEEEeccchhheeecCCcc-----eEEeeccccccCcccccc----c-----cccceeeeeccCCcEEEEecCCc--
Confidence 4577888999988776554433 667772 22 11112221 1 11225788889999998876553
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.....|+.+|.. ..+..-..+......+|.|||
T Consensus 326 ------------------------------------------~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---- 359 (506)
T KOG0289|consen 326 ------------------------------------------TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---- 359 (506)
T ss_pred ------------------------------------------eEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----
Confidence 222334444432 222101123457788999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
++|..- ..++.|-++|+. ......++..+.+.+....||-+|=+||...
T Consensus 360 --Lifgtg-------------t~d~~vkiwdlk----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 360 --LIFGTG-------------TPDGVVKIWDLK----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred --eEEecc-------------CCCceEEEEEcC----------------CccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 666541 234577888872 3335666777788899999999999999888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
++. .+.+||+..-+..+. ++.+ +.+ .+.+++|-..|+.|... +....+
T Consensus 409 dd~-----------~V~lwDLRKl~n~kt----------~~l~--~~~------~v~s~~fD~SGt~L~~~---g~~l~V 456 (506)
T KOG0289|consen 409 DDG-----------SVKLWDLRKLKNFKT----------IQLD--EKK------EVNSLSFDQSGTYLGIA---GSDLQV 456 (506)
T ss_pred cCC-----------eEEEEEehhhcccce----------eecc--ccc------cceeEEEcCCCCeEEee---cceeEE
Confidence 764 288899865442111 0000 000 14466777788876654 456778
Q ss_pred EEEECCCCcEEEec
Q 004149 416 ISVNVSSGELLRIT 429 (771)
Q Consensus 416 ~~~d~~tg~~~~l~ 429 (771)
|.+.-.+.+.+.+.
T Consensus 457 y~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 457 YICKKKTKSWTEIK 470 (506)
T ss_pred EEEecccccceeee
Confidence 88887777766664
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00026 Score=74.93 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=98.0
Q ss_pred CCcEEEEEcCCCCCCCCCcc-hHHHHHHHHCC--cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH--c
Q 004149 536 CDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--M 610 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G--~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--~ 610 (771)
-.|+++++||.+...-...+ ..+...|.-.| ..|..+|++..-+ . ..-....+-++.+.++.+. .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig--G--------~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG--G--------ANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC--C--------cchHHHHHHHHHHhhhhhhhhh
Confidence 35889999998822212222 22333343333 4456677663211 0 0000112333333332222 2
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCc-eeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHH
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~-~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
+......|.|+|.|||+.++.+......+. +.++|++.=..+ ..+ +. .+..+
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~------~vd----------gp------rgirD----- 297 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD------TVD----------GP------RGIRD----- 297 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc------CCC----------cc------cCCcc-----
Confidence 334567899999999988887776654443 555554421111 000 00 00011
Q ss_pred HHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 690 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
..+-.++.|+|++.|.+|..+++...+++.++++. .++++++.+++|.+.-
T Consensus 298 --------E~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 298 --------EALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAI 348 (784)
T ss_pred --------hhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccC
Confidence 12334689999999999999999999999998887 4889999999999874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00026 Score=68.46 Aligned_cols=281 Identities=12% Similarity=0.083 Sum_probs=149.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCC-cccccc---cCC-CcccceeecCCCCeEEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQ-TVHGSV---YAD-GWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~g~~---~~~-~~~~~~~wSpDg~~la~~ 170 (771)
......+|||||..+|.-+.. .+-.++.+. .....+.+..... ..|-.| |.. +.+..+.|.|-+..|+..
T Consensus 113 ~~cR~aafs~DG~lvATGsaD--~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSAD--ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cceeeeeeCCCCcEEEccCCc--ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 446788999999988864432 122233332 1111111111100 001000 110 234789999999988888
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEE
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVW 247 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~w 247 (771)
+.+...+-..+.....+...+..........+.|-|.+.-.+++...+.+.++|+++-+.-.-. .|. ...+.++.+
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRY 269 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEe
Confidence 8777655322221111111111111222234556666556677888899999999987654432 222 346889999
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC---CCCccccceee
Q 004149 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT---ESISSAFFPRF 324 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt---~~~~~~~~p~~ 324 (771)
|+.|+ |+.++. .++.|-++|= -++.+.+-. .+...+.+..|
T Consensus 270 s~t~~-----lYvTaS--------------kDG~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 270 SSTGS-----LYVTAS--------------KDGAIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCcc-----EEEEec--------------cCCcEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEE
Confidence 99998 666652 3346777773 344443221 23345889999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004149 325 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~ 404 (771)
+.+||+|.-...+ +-+++|.+.++.....-.+.... . ... ......|.....+++
T Consensus 314 tkn~kyiLsSG~D-----------S~vkLWEi~t~R~l~~YtGAg~t-g------rq~-------~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 314 TKNGKYILSSGKD-----------STVKLWEISTGRMLKEYTGAGTT-G------RQK-------HRTQAVFNHTEDYVL 368 (430)
T ss_pred ccCCeEEeecCCc-----------ceeeeeeecCCceEEEEecCCcc-c------chh-------hhhhhhhcCccceEE
Confidence 9999988654444 34667777776653322111000 0 000 012334554545555
Q ss_pred EEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCC
Q 004149 405 LSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGD 445 (771)
Q Consensus 405 ~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~d~~ 445 (771)
|- ......|..+|..++....+... .+...+...||.+.
T Consensus 369 ~p--DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 369 FP--DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred cc--ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 43 33455688888777765555432 23345555555443
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=71.75 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHH--------HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 608 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~l--------a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~ 608 (771)
...|||+||..++ ...+......+ ....+.++..||..... . ..+.......+-+..+++.+.
T Consensus 4 g~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~----~~g~~l~~q~~~~~~~i~~i~ 74 (225)
T PF07819_consen 4 GIPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---A----FHGRTLQRQAEFLAEAIKYIL 74 (225)
T ss_pred CCEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---c----cccccHHHHHHHHHHHHHHHH
Confidence 3569999996554 22333333222 12357889999875211 0 111111122344556666665
Q ss_pred HcC---CCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecC
Q 004149 609 DMG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARN 648 (771)
Q Consensus 609 ~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~ 648 (771)
+.. ...+++|.|+||||||.++-.++...+ +.++.+|..+
T Consensus 75 ~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 75 ELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred HhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 543 356789999999999999988876543 3567766544
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00084 Score=64.93 Aligned_cols=161 Identities=11% Similarity=0.010 Sum_probs=96.0
Q ss_pred CceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 217 QPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 217 ~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
+..|++|++.+... -.+ .-....+..+.|.+||.. |+-.+ .+.+++.+|.
T Consensus 68 Dr~I~LWnv~gdceN~~~l--kgHsgAVM~l~~~~d~s~----i~S~g---------------tDk~v~~wD~------- 119 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENFWVL--KGHSGAVMELHGMRDGSH----ILSCG---------------TDKTVRGWDA------- 119 (338)
T ss_pred cceEEEEeccccccceeee--ccccceeEeeeeccCCCE----EEEec---------------CCceEEEEec-------
Confidence 46899999765432 222 233446788999999997 77665 3348999998
Q ss_pred hhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 295 SELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
++|+. ++...+...+.+..-+.-|-.|+-...++ .++.+||..+.+..+..+...+
T Consensus 120 ----------~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyq--- 176 (338)
T KOG0265|consen 120 ----------ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQ--- 176 (338)
T ss_pred ----------ccceeeehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhcccccee---
Confidence 66654 44545555555555566677777666554 4688899887665444322222
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNII 448 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~ 448 (771)
+..+.|..++..+ ++..-++..++| |+..++..-+..+.. .+.....+++|..++
T Consensus 177 -----------------ltAv~f~d~s~qv-~sggIdn~ikvW--d~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 177 -----------------LTAVGFKDTSDQV-ISGGIDNDIKVW--DLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred -----------------EEEEEecccccce-eeccccCceeee--ccccCcceEEeecccCceeeEEeccCCCccc
Confidence 3356677777655 444444444555 554455554444433 333345566666543
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0012 Score=64.17 Aligned_cols=232 Identities=13% Similarity=0.167 Sum_probs=134.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--Cc--chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS--YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--~~--~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.++..++-- +++++|+||-.|.-+.+... .. ....++.+.++ |.|+-+|-+|.-.-.. .++..+.-.
T Consensus 33 ~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp----~~p~~y~yP 103 (326)
T KOG2931|consen 33 VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAP----SFPEGYPYP 103 (326)
T ss_pred cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCc----cCCCCCCCC
Confidence 477777642 23367889999985443211 11 12345666666 9999999998533222 233333333
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh---------------hcCC
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------------VGTT 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------------~~~~ 660 (771)
..+++.+.+..+.+.. .-+-|.-+|--.|+++-..+|..||+++-++|++++......+ .+.+
T Consensus 104 smd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~K~~s~~l~~~Gmt 181 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWAYNKVSSNLLYYYGMT 181 (326)
T ss_pred CHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHHHHHHHHHHHHhhchh
Confidence 4677777777776653 4567889999999999999999999999999999875432111 0111
Q ss_pred -CCCcchhhhhccCCCCCc-----------CCCCCChhhHHHH----hhcCccc-ccc----CCCCcEEEEeeCCCCccC
Q 004149 661 -DIPDWCYVESYGSKGKDS-----------FTESPSVEDLTRF----HSKSPIS-HIS----KVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 661 -~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~----~~~sp~~-~~~----~i~~P~Lii~G~~D~~vp 719 (771)
...++.+...++.+.... +.......+...+ ..+..+. ... .+++|+|++.|+.-+.+
T Consensus 182 ~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~- 260 (326)
T KOG2931|consen 182 QGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHV- 260 (326)
T ss_pred hhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecCCCchh-
Confidence 111222223333322111 1111222222222 1222211 111 45699999999998877
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+...++..+|.. ..+.++.+.++|-.... +......+.+.-|+.
T Consensus 261 -~~vv~~n~~Ldp--~~ttllk~~d~g~l~~e-~qP~kl~ea~~~Flq 304 (326)
T KOG2931|consen 261 -SAVVECNSKLDP--TYTTLLKMADCGGLVQE-EQPGKLAEAFKYFLQ 304 (326)
T ss_pred -hhhhhhhcccCc--ccceEEEEcccCCcccc-cCchHHHHHHHHHHc
Confidence 566677666654 24778888888765543 233344555555543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=66.64 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=95.7
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEe-cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws-pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...|+.++..+++.+.+. .+. ....++. +||+ |++.. . ..+.++|+
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-----l~v~~-~---------------~~~~~~d~-------- 67 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-----LYVAD-S---------------GGIAVVDP-------- 67 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-----EEEEE-T---------------TCEEEEET--------
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-----EEEEE-c---------------CceEEEec--------
Confidence 378999999999877662 222 4455666 6654 54443 1 14555587
Q ss_pred hhhhhcCCCCCCcceecCCC------CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004149 296 ELELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
.+++.+.+... .......++.|||+ |+|.......... .....||+++.. ++...+....
T Consensus 68 ---------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~--~~~g~v~~~~~~-~~~~~~~~~~- 133 (246)
T PF08450_consen 68 ---------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG--IDPGSVYRIDPD-GKVTVVADGL- 133 (246)
T ss_dssp ---------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC--GGSEEEEEEETT-SEEEEEEEEE-
T ss_pred ---------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc--ccccceEEECCC-CeEEEEecCc-
Confidence 66665544332 23467789999999 7777655321100 111568999876 3422211110
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC--CCcE---EEec-CCCC--CceeeEEe
Q 004149 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGEL---LRIT-PAES--NFSWSLLT 441 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~--tg~~---~~l~-~~~~--~~~~~~~s 441 (771)
. ....++|+||++.||++.+..+. ||+++++ ++++ +.+. .... ......++
T Consensus 134 ------------~-------~pNGi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 134 ------------G-------FPNGIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp ------------S-------SEEEEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred ------------c-------cccceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 1 13467899999989887654444 6666653 4422 2221 1111 12334555
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 442 LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 442 ~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+|+ |+.+.. ....|++++..
T Consensus 193 ~~G~-l~va~~---~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGN-LWVADW---GGGRIVVFDPD 213 (246)
T ss_dssp TTS--EEEEEE---TTTEEEEEETT
T ss_pred CCCC-EEEEEc---CCCEEEEECCC
Confidence 6665 444433 44567777644
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00092 Score=61.91 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=77.1
Q ss_pred CcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCC-CCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 537 DPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~V~~~d~rG~~-~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.-.|||+-|-+..... .....+..+|-+.+|..+.+-.+.+. |||.. ....+.+|+..+++++...++
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCc--
Confidence 3556777553322212 23345677888999999999988642 24432 223568999999998876542
Q ss_pred CCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCccchh
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 654 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~~~ 654 (771)
...|+|+|||-|.+-.++++.+ .+..++++|+.+|+.|..
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 4589999999999999998843 256789999999999875
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00082 Score=66.43 Aligned_cols=231 Identities=13% Similarity=0.202 Sum_probs=115.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-----~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+++.++-- ..+++|+||-.|--+.+.. ..|. ..++.+ ...|.|+-+|.+|..+-... ++..+.-
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlNh~-scF~~ff~~~~m~~i-~~~f~i~Hi~aPGqe~ga~~----~p~~y~y 79 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLNHK-SCFQGFFNFEDMQEI-LQNFCIYHIDAPGQEEGAAT----LPEGYQY 79 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT--HH-HHCHHHHCSHHHHHH-HTTSEEEEEE-TTTSTT---------TT---
T ss_pred EEEEEEEec----CCCCCceEEEeccccccch-HHHHHHhcchhHHHH-hhceEEEEEeCCCCCCCccc----ccccccc
Confidence 466666643 2336899999997443211 1122 233444 45699999999996542222 2222222
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh---------------cC
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------GT 659 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---------------~~ 659 (771)
..++++.+.+..+.+.. .-+.+.-+|--+|+++-+.+|..+|+++.++|+++|......+. +.
T Consensus 80 Psmd~LAe~l~~Vl~~f--~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L~~~gm 157 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHF--GLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLLYSYGM 157 (283)
T ss_dssp --HHHHHCTHHHHHHHH--T---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH-------CT
T ss_pred cCHHHHHHHHHHHHHhC--CccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccccccccc
Confidence 33555555555555542 23579999999999999999999999999999999866432110 01
Q ss_pred CCC-CcchhhhhccCCCC-----------CcCCCCCChhhHHHH----hhcC-ccccccCCCCcEEEEeeCCCCccCcHH
Q 004149 660 TDI-PDWCYVESYGSKGK-----------DSFTESPSVEDLTRF----HSKS-PISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 660 ~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~~s-p~~~~~~i~~P~Lii~G~~D~~vp~~~ 722 (771)
+.. .+......++.... ..+.....+.+...+ ..+. .....+...+|+|++.|+.-+.+ +.
T Consensus 158 t~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~--~~ 235 (283)
T PF03096_consen 158 TSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHV--DD 235 (283)
T ss_dssp TS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTH--HH
T ss_pred ccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcch--hh
Confidence 100 01111111111000 000011111111111 1111 11234556799999999999887 77
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 723 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.++..+|.. .+.+++.++++|=... .+......+.+.-|+.
T Consensus 236 vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 236 VVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp HHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred HHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 7888888854 3589999998865433 3344455555555554
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00026 Score=70.68 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc----c-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS----Y-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~----~-~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
|+..+.+..+.-+ ..++..-|++.-|.+....... . .......-+.|..|+.+||||.+.+-+ ..+
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G------~~s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTG------PPS 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCC------CCC
Confidence 6788888777632 2345567888888544322100 1 223344457899999999999543311 111
Q ss_pred ccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHHhC
Q 004149 592 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 637 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~ 637 (771)
....+.|..+.++||.++. .+.+++|.+.|||.||.++..++.++
T Consensus 191 -~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 -RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1234788889999998743 36889999999999999998876654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0015 Score=67.43 Aligned_cols=232 Identities=12% Similarity=0.054 Sum_probs=133.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....|-.||+.+|-- + ..|.-++|.+....-.+.+-.....+ ....|+|++..++..+.+.
T Consensus 69 ~~v~s~~fR~DG~LlaaG-D-~sG~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAG-D-ESGHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred cceeEEEeecCCeEEEcc-C-CcCcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC----
Confidence 457888999999988752 2 11333333311100111111112233 3778999888776654432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..+-.||+.+..+ +++-......+...+|+|-... |
T Consensus 133 ---------------------------------------~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~h----i 168 (487)
T KOG0310|consen 133 ---------------------------------------KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDH----I 168 (487)
T ss_pred ---------------------------------------ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCe----E
Confidence 4567788888876 3321445557888899999998 9
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEecC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++++- .+..|..+|+ .+...+.+ .++...+.+..+-|.|+.|+..+
T Consensus 169 vvtGs--------------YDg~vrl~Dt-----------------R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-- 215 (487)
T KOG0310|consen 169 VVTGS--------------YDGKVRLWDT-----------------RSLTSRVVELNHGCPVESVLALPSGSLIASAG-- 215 (487)
T ss_pred EEecC--------------CCceEEEEEe-----------------ccCCceeEEecCCCceeeEEEcCCCCEEEEcC--
Confidence 88872 2235666665 22212222 23455688999999999888654
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
++.+.+||+.+|......... +.-.+..+++..|+.+|+ +..-++..++|.
T Consensus 216 ----------Gn~vkVWDl~~G~qll~~~~~------------------H~KtVTcL~l~s~~~rLl-S~sLD~~VKVfd 266 (487)
T KOG0310|consen 216 ----------GNSVKVWDLTTGGQLLTSMFN------------------HNKTVTCLRLASDSTRLL-SGSLDRHVKVFD 266 (487)
T ss_pred ----------CCeEEEEEecCCceehhhhhc------------------ccceEEEEEeecCCceEe-ecccccceEEEE
Confidence 356899999865542211110 001234556777887774 555566667774
Q ss_pred EECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 418 VNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 418 ~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
..+-++. .+.-+. .+-...+++|+..++.-.++..
T Consensus 267 --~t~~Kvv~s~~~~~-pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 267 --TTNYKVVHSWKYPG-PVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred --ccceEEEEeeeccc-ceeeEEecCCCceEEEecccce
Confidence 3232322 222222 2344677888888877665543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.012 Score=63.06 Aligned_cols=187 Identities=12% Similarity=0.044 Sum_probs=115.8
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...+.++|..+.+...- .+-......++++||++. ++... . .+++..+..+|-
T Consensus 95 ~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~----vYV~n-~-----------~~~~~~vsvid~--------- 147 (381)
T COG3391 95 SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY----VYVAN-A-----------GNGNNTVSVIDA--------- 147 (381)
T ss_pred CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCE----EEEEe-c-----------ccCCceEEEEeC---------
Confidence 36788899776665444 333336778999999997 66553 1 113457888886
Q ss_pred hhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 297 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
.++...............+++|||++++..... ...|.++|..+....+ .... ...
T Consensus 148 --------~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~----------~~~v~vi~~~~~~v~~-~~~~-~~~---- 203 (381)
T COG3391 148 --------ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSD----------DNTVSVIDTSGNSVVR-GSVG-SLV---- 203 (381)
T ss_pred --------CCCeEEEEEecCCCcceEEECCCCCeEEEEecC----------CCeEEEEeCCCcceec-cccc-ccc----
Confidence 444433222222233778999999987666522 3568888865544322 1100 000
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEEEEeCC
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~d~~~l~~~~s~~ 454 (771)
..+ .......+++||+++++.........+..+|..++.+........ .......+|+|+.++.....
T Consensus 204 ----~~~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~- 273 (381)
T COG3391 204 ----GVG-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ- 273 (381)
T ss_pred ----ccC-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-
Confidence 001 124567899999988777654444689999999988887632222 23346788999988877655
Q ss_pred CCCCeEEEEEec
Q 004149 455 VDVPQVKYGYFV 466 (771)
Q Consensus 455 ~~p~~l~~~~~~ 466 (771)
...+++++..
T Consensus 274 --~~~V~vid~~ 283 (381)
T COG3391 274 --GGTVSVIDGA 283 (381)
T ss_pred --CCeEEEEeCC
Confidence 5667777654
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0013 Score=67.63 Aligned_cols=207 Identities=11% Similarity=0.128 Sum_probs=118.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCCcEEEEECCCCCCCC-Chhhh---------
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEAL--------- 585 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~V~~~d~rG~~~~-g~~~~--------- 585 (771)
++.++- .+|+|.. ..+...+||++||-+....+. ....+-..|.+.|+.++++..+.-... -....
T Consensus 70 ~~~~fl-aL~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a 146 (310)
T PF12048_consen 70 GEERFL-ALWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSA 146 (310)
T ss_pred CCEEEE-EEEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCC
Confidence 344454 4666653 556678999999966554433 334455678999999999887751100 00000
Q ss_pred --hcCCCC-----------------ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-ceeEEE
Q 004149 586 --QSLPGK-----------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAA 645 (771)
Q Consensus 586 --~~~~~~-----------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v 645 (771)
...... .-.....-+.+++.++.+++ ..+|+|+||..|+++++.+....+. .+.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV 223 (310)
T PF12048_consen 147 GDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALV 223 (310)
T ss_pred CCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEE
Confidence 000000 00011233445566666664 3559999999999999999987654 478888
Q ss_pred ecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHH
Q 004149 646 ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 646 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 725 (771)
++++..... .. .......+.+++.|+|=|++.....+ .....
T Consensus 224 ~I~a~~p~~-------------------------------~~-----n~~l~~~la~l~iPvLDi~~~~~~~~--~~~a~ 265 (310)
T PF12048_consen 224 LINAYWPQP-------------------------------DR-----NPALAEQLAQLKIPVLDIYSADNPAS--QQTAK 265 (310)
T ss_pred EEeCCCCcc-------------------------------hh-----hhhHHHHhhccCCCEEEEecCCChHH--HHHHH
Confidence 887753110 00 00112345678899999998873322 22222
Q ss_pred HHHHH-HhC-CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 726 YARAL-REK-GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 726 ~~~~l-~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
..+.+ ++. ....+-+.+.+..|..... .....++|..|++++
T Consensus 266 ~R~~~a~r~~~~~YrQ~~L~~~~~~~~~~--~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 266 QRKQAAKRNKKPDYRQIQLPGLPDNPSGW--QEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHhccCCCceeEecCCCCCChhhH--HHHHHHHHHHHHHhh
Confidence 22222 222 2345666666666644322 223788999999875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0017 Score=63.53 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=68.6
Q ss_pred cccccCCcCcccCCccCceEEEEEc-cCCceeec-c-CCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAV-K-GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~-~~~~~~~l-~-~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
...|++| |+++....+..|.++|+ ..|.--.+ + -+.+ ...+..+++||-.... ++..+
T Consensus 163 sL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~---~a~gs----------- 227 (406)
T KOG2919|consen 163 SLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKT---LAVGS----------- 227 (406)
T ss_pred eEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcc---eeeec-----------
Confidence 3456777 44444445678888887 33432111 1 0111 2356778999965541 55544
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004149 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
+.+...||..+ ..+.+..|-.+.+.+....|-+||.+|+..++. +..|..
T Consensus 228 --Y~q~~giy~~~------------------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk----------~dkIl~ 277 (406)
T KOG2919|consen 228 --YGQRVGIYNDD------------------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK----------DDKILC 277 (406)
T ss_pred --ccceeeeEecC------------------CCCceeeecccCCCeeeEEeccCcCeecccccC----------CCeEEE
Confidence 22333566665 455566677778889999999999988544433 356888
Q ss_pred eecCC
Q 004149 354 IDWPT 358 (771)
Q Consensus 354 ~d~~~ 358 (771)
||+..
T Consensus 278 WDiR~ 282 (406)
T KOG2919|consen 278 WDIRY 282 (406)
T ss_pred Eeehh
Confidence 88754
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00062 Score=60.28 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch-hhhhcCCCCCc-chhhhhccCC
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMVGTTDIPD-WCYVESYGSK 674 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~~~~~~~~~~~-~~~~~~~~~~ 674 (771)
...+.+-++.++++. . ....+|+|.|.||+.+.+++.++. ++++ +.+|.+.. ..+.+.-+.+. |..-+.+-
T Consensus 42 p~~a~~ele~~i~~~-~-~~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~en~ytg~~y~-- 114 (191)
T COG3150 42 PQQALKELEKAVQEL-G-DESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPENPYTGQEYV-- 114 (191)
T ss_pred HHHHHHHHHHHHHHc-C-CCCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCCCCCCcceEE--
Confidence 344455555555543 1 234899999999999999998864 4444 44554422 12211111111 00000000
Q ss_pred CCCcCCCCCChhhHHHHhhcCccccccCCCCc-EEEEeeCC-CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQ-DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~-D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
. ......... ......++.| .|.+.... |.+....++.+.+... ...+..|.+|.|...
T Consensus 115 -----l---e~~hI~~l~----~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~~f 175 (191)
T COG3150 115 -----L---ESRHIATLC----VLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFKGF 175 (191)
T ss_pred -----e---ehhhHHHHH----HhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCccccch
Confidence 0 001111111 1223344444 55555444 9998877777776665 345778899998754
Q ss_pred CChHHHHHHHHHHHH
Q 004149 753 QSDFESFLNIGLWFK 767 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~ 767 (771)
. ..++.|..|..
T Consensus 176 ~---~~l~~i~aF~g 187 (191)
T COG3150 176 S---RHLQRIKAFKG 187 (191)
T ss_pred H---HhHHHHHHHhc
Confidence 3 45778888764
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00041 Score=69.30 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=58.6
Q ss_pred CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 702 ~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
...+|-|.+.++.|.+++.++.+++.+..++.|.+++...+++..|.-....+..++++.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 44689999999999999999999999999999999999999999998777777788888888763
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0011 Score=71.84 Aligned_cols=192 Identities=14% Similarity=0.156 Sum_probs=115.6
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-------CCcceE--------EEecCCcccccccCCCcccceeecC
Q 004149 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-------QSQLEK--------EFHVPQTVHGSVYADGWFEGISWNS 162 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~wSp 162 (771)
.+.++..+.+|||+..+..+.+. ...+|+ .|..++ .+.++..+ .++++||
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDk-----tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv----------L~v~~Sp 518 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADK-----TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV----------LCVSVSP 518 (888)
T ss_pred ccceeeeeecCCCCceEEecCCc-----EEEEEeEEEEeccCcccceeeeeccceEEeccccE----------EEEEEcC
Confidence 35688899999999998765543 333441 233323 23333343 6999999
Q ss_pred CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee-ccCCCCCCc
Q 004149 163 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLS 241 (771)
Q Consensus 163 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~ 241 (771)
||+.||..--+ +.+-++=+++=+... | -.....
T Consensus 519 dgk~LaVsLLd--------------------------------------------nTVkVyflDtlKFflsL--YGHkLP 552 (888)
T KOG0306|consen 519 DGKLLAVSLLD--------------------------------------------NTVKVYFLDTLKFFLSL--YGHKLP 552 (888)
T ss_pred CCcEEEEEecc--------------------------------------------CeEEEEEecceeeeeee--cccccc
Confidence 99999886322 233333333333222 2 234456
Q ss_pred cceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCcccc
Q 004149 242 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAF 320 (771)
Q Consensus 242 ~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~ 320 (771)
+.....|||++- |+..+ .+++-.||=+|+ |.+ +-+..+..++.
T Consensus 553 V~smDIS~DSkl----ivTgS-------------ADKnVKiWGLdF-------------------GDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 553 VLSMDISPDSKL----IVTGS-------------ADKNVKIWGLDF-------------------GDCHKSFFAHDDSVM 596 (888)
T ss_pred eeEEeccCCcCe----EEecc-------------CCCceEEecccc-------------------chhhhhhhcccCcee
Confidence 778899999997 77665 345557888876 554 45677788899
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
++.|-|+ ..+.|....+ ..+..||-..=+..+...+. .. -+.-.+-+|+|
T Consensus 597 ~V~F~P~-~~~FFt~gKD----------~kvKqWDg~kFe~iq~L~~H--------------~~-----ev~cLav~~~G 646 (888)
T KOG0306|consen 597 SVQFLPK-THLFFTCGKD----------GKVKQWDGEKFEEIQKLDGH--------------HS-----EVWCLAVSPNG 646 (888)
T ss_pred EEEEccc-ceeEEEecCc----------ceEEeechhhhhhheeeccc--------------hh-----eeeeeEEcCCC
Confidence 9999995 5677777654 24556653322211111110 00 12234568999
Q ss_pred CEEEEEeeeCCeeEEEE
Q 004149 401 CTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~ 417 (771)
. .+++++.+...++|.
T Consensus 647 ~-~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 647 S-FVVSSSHDKSIRLWE 662 (888)
T ss_pred C-eEEeccCCceeEeee
Confidence 8 456777666777775
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0016 Score=65.24 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=87.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+++||||+.+|++.. .++...++....++....+... .. +..++|++||...++.. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~-~~~~~~L~~~~~~~~~~~~~~g-~~----------l~~PS~d~~g~~W~v~~-~~----- 86 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE-GDGGRSLYVGPAGGPVRPVLTG-GS----------LTRPSWDPDGWVWTVDD-GS----- 86 (253)
T ss_pred cccceEECCCCCeEEEEEE-cCCCCEEEEEcCCCcceeeccC-Cc----------cccccccCCCCEEEEEc-CC-----
Confidence 5788999999999999983 2255667766655554444321 12 26999999976444432 11
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCC-ccceEEEecCCCCCcc
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSL-SVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~-~~~~~~wspDg~~~~~ 256 (771)
.....+.+...++ ...+. .+... .+..+.+||||.+
T Consensus 87 -------------------------------------~~~~~~~~~~~g~~~~~~v~-~~~~~~~I~~l~vSpDG~R--- 125 (253)
T PF10647_consen 87 -------------------------------------GGVRVVRDSASGTGEPVEVD-WPGLRGRITALRVSPDGTR--- 125 (253)
T ss_pred -------------------------------------CceEEEEecCCCcceeEEec-ccccCCceEEEEECCCCcE---
Confidence 0112222323333 33332 22222 6889999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC------cceecC-CCCccccceeecCCCC
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL------PVVNLT-ESISSAFFPRFSPDGK 329 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~lt-~~~~~~~~p~~SpDG~ 329 (771)
++++....+ ..+||+.-+... ..+ ....+. .....+.+..|+++++
T Consensus 126 -vA~v~~~~~------------~~~v~va~V~r~--------------~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 126 -VAVVVEDGG------------GGRVYVAGVVRD--------------GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred -EEEEEecCC------------CCeEEEEEEEeC--------------CCCCcceeccceEecccccCcceeeeecCCCE
Confidence 999873322 236666654211 222 122222 2234578899999998
Q ss_pred EEEEEecC
Q 004149 330 FLVFLSAK 337 (771)
Q Consensus 330 ~l~f~~~~ 337 (771)
.++.....
T Consensus 179 L~V~~~~~ 186 (253)
T PF10647_consen 179 LVVLGRSA 186 (253)
T ss_pred EEEEeCCC
Confidence 55554433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00033 Score=72.68 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=40.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEE-EecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
+.+..-.|||||.-|+.+.+++ +..+| ..|-.+.. .+....+ .+.+|.|+...|+|-
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEe
Confidence 4577789999999998765544 88999 44443322 2222333 699999999999996
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=56.58 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=116.2
Q ss_pred ceEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~-la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+++|.-.+ ++|.+..+ ...+.++ .+.+...+.....+.| .|+--.|||||+ ++|..+....
T Consensus 70 ~Hgi~~~p~~~ravafARrPG---tf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~dG~-~LYATEndfd-- 136 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPG---TFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSPDGR-LLYATENDFD-- 136 (366)
T ss_pred cCCeecCCCCcceEEEEecCC---ceEEEECCCCCcCcEEEecccCce-------eecccccCCCCc-EEEeecCCCC--
Confidence 345678886554 55554433 2233444 3333333333333333 234557999998 5566554321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC-CCCCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~-~~~~~~~~~~~wspDg~~~~~~ 257 (771)
..+..|-++|... ...++-. ........++.|.+||+.
T Consensus 137 ------------------------------------~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrt---- 175 (366)
T COG3490 137 ------------------------------------PNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRT---- 175 (366)
T ss_pred ------------------------------------CCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcE----
Confidence 1457888898763 3444411 223446678999999997
Q ss_pred EEEEee--cCcc--eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecC--CCCccccceeecCCC
Q 004149 258 LVFVGW--SSET--RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLT--ESISSAFFPRFSPDG 328 (771)
Q Consensus 258 l~~~~~--~~~~--~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt--~~~~~~~~p~~SpDG 328 (771)
|+...- +..+ .|.-+..+... ..|.++|. .+|++ ..|. ....+++....-+||
T Consensus 176 lvvanGGIethpdfgR~~lNldsMe-PSlvlld~-----------------atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSME-PSLVLLDA-----------------ATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred EEEeCCceecccccCccccchhhcC-ccEEEEec-----------------cccchhhhccCchhhhhcceeeeeeCCCC
Confidence 766532 1111 11111112222 24667774 33432 2333 223457888889999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
+ ++|..+-. |+.+....|.-.-..++..+.+...+.... .|. ..+.+++-..+...+.+++.
T Consensus 238 t-vwfgcQy~----G~~~d~ppLvg~~~~g~~l~~~~~pee~~~---------~~a----nYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 238 T-VWFGCQYR----GPRNDLPPLVGHFRKGEPLEFLDLPEEQTA---------AFA----NYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred c-EEEEEEee----CCCccCCcceeeccCCCcCcccCCCHHHHH---------HHH----hhhhheeecccCCeEEEecC
Confidence 8 44544332 433333344433333333222211110000 010 11334444444444555544
Q ss_pred eCCeeEEEEEECCCCcEEEec
Q 004149 409 WGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.+ +..+.+|.+||.+....
T Consensus 300 ~G--N~~vi~da~tG~vv~~a 318 (366)
T COG3490 300 RG--NRAVIWDAATGAVVSEA 318 (366)
T ss_pred CC--CeEEEEEcCCCcEEecc
Confidence 33 34566799999988654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0056 Score=63.71 Aligned_cols=170 Identities=12% Similarity=0.194 Sum_probs=98.4
Q ss_pred ccceEEEeCCC--CCeEEEEecCCCCCCeEEEEe-c-CCcceEEEec--CCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPS--GSKLLVVRNPENESPIQFELW-S-QSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~~~-~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.++...+|||- +..|||..-...+......++ - .+.....-.+ ..++ .+.|.+.|+.|.+...
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-----------qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-----------QLKWQVLGKYLLVLVM 242 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-----------EEEEecCCceEEEEEE
Confidence 45788999996 445677654443444444444 1 1221111111 2233 7899999999999876
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....... .+ . +...||++++....++.. ..-...+.+++|+|+++
T Consensus 243 t~~ksnK-----------------sy---------f-------gesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 243 THTKSNK-----------------SY---------F-------GESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSS 287 (561)
T ss_pred Eeeeccc-----------------ce---------e-------ccceEEEEeeccccccee--ccccccceeeeecccCC
Confidence 5431100 00 0 237899999885544443 23345688999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
+ .+.++-. .+..+-..|+ .+. ++-. .....-..+.|||.+++|+
T Consensus 288 ~----F~vi~g~-------------~pa~~s~~~l-----------------r~N-l~~~-~Pe~~rNT~~fsp~~r~il 331 (561)
T COG5354 288 R----FAVISGY-------------MPASVSVFDL-----------------RGN-LRFY-FPEQKRNTIFFSPHERYIL 331 (561)
T ss_pred c----eeEEecc-------------cccceeeccc-----------------ccc-eEEe-cCCcccccccccCcccEEE
Confidence 9 7776511 2234555565 223 2211 1222234578999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+..-+.. ...+-++|..+
T Consensus 332 ~agF~nl--------~gni~i~~~~~ 349 (561)
T COG5354 332 FAGFDNL--------QGNIEIFDPAG 349 (561)
T ss_pred EecCCcc--------ccceEEeccCC
Confidence 9776542 33466676544
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0097 Score=64.05 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=100.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...++|.+.++||..+..+ .+++| .+--...++..+. |..+.+++|++.| +|..+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g~~--------drsIE~L~W~e~~-RLFS~g---- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHGPE--------DRSIESLAWAEGG-RLFSSG---- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEecCC--------CCceeeEEEccCC-eEEeec----
Confidence 4578899999999999877655 56777 2223334444422 2234799999555 454431
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
....|.-||+.+++.+.-. -.....+.+.+.+|-++.
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 3468899999988876552 223335667777787775
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
++.. |.+. .|+.++. ..+.. +.|-...+.+.+..|+|+|.+|+
T Consensus 125 --l~Ig-------------cddG--vl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIG-------------CDDG--VLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEee-------------cCCc--eEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 5544 3332 6776665 44432 22333346688999999999998
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
-.+.+ ..|.+||+..+..
T Consensus 171 ~Gs~D-----------g~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSID-----------GVIRIWDVKSGQT 188 (691)
T ss_pred ecccC-----------ceEEEEEcCCCce
Confidence 65544 3478888877664
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=69.75 Aligned_cols=90 Identities=24% Similarity=0.435 Sum_probs=53.6
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcE---EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|||+||.... ....|......|.++||. |++++|-..... ....... .....+.++.++|+.+.+. ...
T Consensus 3 PVVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa 75 (219)
T PF01674_consen 3 PVVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY--TGA 75 (219)
T ss_dssp -EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH--HT-
T ss_pred CEEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh--hCC
Confidence 38999996542 256788999999999999 899998542210 1111000 1112246777888877765 345
Q ss_pred CeEEEEEcChhHHHHHHHHHh
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~ 636 (771)
+|-|+||||||.++-+++..
T Consensus 76 -kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 -KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp --EEEEEETCHHHHHHHHHHH
T ss_pred -EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999888753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00025 Score=77.68 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=67.8
Q ss_pred CcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhh------cCCCCccccchhhHHHHHHHHH
Q 004149 537 DPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ------SLPGKVGSQDVNDVLTAIDHVI 608 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~------~~~~~~~~~~~~D~~~~i~~l~ 608 (771)
.|++|++-| -+..... ..........+.|-.|++.++|- ||.+... .+..-...+.++|+...++++.
T Consensus 29 gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 688887755 2221100 11122333457799999999997 6665421 1111122345789999999998
Q ss_pred HcC-CCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc
Q 004149 609 DMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652 (771)
Q Consensus 609 ~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 652 (771)
.+. ..+..+++++|.|+||.+|+++-.++|+.+.++++.++++.
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 653 23556999999999999999999999999999888777553
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0031 Score=61.49 Aligned_cols=185 Identities=10% Similarity=0.084 Sum_probs=104.4
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+..||+.|.+||... .+..+.+||..|-.+-++.
T Consensus 27 ~~~~Fs~~G~~lAvGc--------------------------------------------~nG~vvI~D~~T~~iar~l- 61 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGC--------------------------------------------ANGRVVIYDFDTFRIARML- 61 (405)
T ss_pred ceEEeccCcceeeeec--------------------------------------------cCCcEEEEEccccchhhhh-
Confidence 4889999999998853 3467899999887765552
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~ 314 (771)
...-..+.+++||+||+. |+..+ ++..|-.+|+ -.|. ..++.
T Consensus 62 saH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl-----------------~~gs~l~rir- 104 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDL-----------------LKGSPLKRIR- 104 (405)
T ss_pred hccccceeEEEecCCCCE----eeeec---------------CCceeEEEec-----------------cCCCceeEEE-
Confidence 334457889999999998 88776 3346777887 3333 33332
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
-...+....|.|-.+..+....-+ .+-+++++.....+.+..+. +++.. .+....
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~----------~sp~vi~~s~~~h~~Lp~d~-----------d~dln----~sas~~ 159 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIME----------ESPVVIDFSDPKHSVLPKDD-----------DGDLN----SSASHG 159 (405)
T ss_pred ccCccceeeeccccCCeEEEEEec----------CCcEEEEecCCceeeccCCC-----------ccccc----cccccc
Confidence 123456667777554443333222 11334444433332222221 11110 011223
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEE---EecCCCCCceeeEEeecCCEEEEEE
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~---~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.|.+-|++|+. .+.. ..|..++..|-+.. +++.. ..+-...++..|+.+++-.
T Consensus 160 ~fdr~g~yIit-GtsK--Gkllv~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 160 VFDRRGKYIIT-GTSK--GKLLVYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred cccCCCCEEEE-ecCc--ceEEEEecchheeeeeeeechh-eeeeEEEEeccCcEEEEec
Confidence 47788987753 3333 44555566555433 33331 2345567888888776544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0002 Score=70.84 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=87.1
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..|+++|+..+.+..- .--...-..++|+| +. ..|++ .+.+..||.+|.-
T Consensus 208 sDrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~-------------a~ED~nlY~~DmR------- 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVA-------------ANEDHNLYTYDMR------- 259 (433)
T ss_pred cCCceEEEecccCCccce--eeeeccccceecCc--cc----cceee-------------ccccccceehhhh-------
Confidence 457899999987765332 12223455789999 33 66665 2345589999971
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 296 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.-..+..+. ++...+.++.|||.|+.++-.+-+. .|.++....+..+.+-....
T Consensus 260 ---------~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtkR----- 314 (433)
T KOG0268|consen 260 ---------NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTKR----- 314 (433)
T ss_pred ---------hhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHhh-----
Confidence 112222222 3344688999999999998777664 36666665555433211110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
...+..+.||-|+++| ++.+.+++.+||.-+.
T Consensus 315 -------------Mq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 315 -------------MQHVFCVKYSMDSKYI-ISGSDDGNVRLWKAKA 346 (433)
T ss_pred -------------hheeeEEEEeccccEE-EecCCCcceeeeecch
Confidence 1134567899999855 7778888899998654
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=6e-05 Score=78.01 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=62.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcch-HHHHHH-HH--CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYS-KSLAFL-SS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~-~~~~~l-a~--~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 609 (771)
+...|++|++||.........|. .....+ .. ..+.|+++|+..... ..+..... ........+...|..|..
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~--n~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVA--NTRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcc--ccccchhh--hHHHHHHHHHHHHHHHHh
Confidence 44689999999966554223333 344434 33 589999999863110 00000000 000112344455667765
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCCcc
Q 004149 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 651 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p~~ 651 (771)
...++.++|.|+|||+||++|..++..... ++..+..+.|..
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 445789999999999999999988887665 788888877754
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=68.94 Aligned_cols=159 Identities=23% Similarity=0.295 Sum_probs=86.3
Q ss_pred cCCccCceEEEEEccCCceeeccC---CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKG---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~---~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
+.+....+++++|....++.+|-+ .-...++....|-|.++. ++.++... | +||.+|..
T Consensus 189 lIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~----~Fl~a~~s-----G---------nlyly~~~ 250 (636)
T KOG2394|consen 189 LIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS----LFLVAHAS-----G---------NLYLYDKE 250 (636)
T ss_pred EEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc----eEEEEEec-----C---------ceEEeecc
Confidence 334455677777766555544410 112236677899998888 77776322 2 34444320
Q ss_pred c---------c-cchhhhhhhhcCCC--CCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 289 L---------Y-KSEASELELKESSS--EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 289 ~---------~-~~~~~~~~~~~~~~--~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
- + .++....++.+.+. .-..+.+..-..+.+....|||||++||.++++. -|.++|.
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDG-----------fLRvF~f 319 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDG-----------FLRIFDF 319 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCc-----------eEEEeec
Confidence 0 0 00001111111110 1122233333455788899999999999999884 2666666
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
.+.+..-+.. ..|- ++--++||||||+|+ +...++-..+|.+.
T Consensus 320 dt~eLlg~mk--------------SYFG-----GLLCvcWSPDGKyIv-tGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 320 DTQELLGVMK--------------SYFG-----GLLCVCWSPDGKYIV-TGGEDDLVTVWSFE 362 (636)
T ss_pred cHHHHHHHHH--------------hhcc-----ceEEEEEcCCccEEE-ecCCcceEEEEEec
Confidence 6644322111 1232 345679999999764 44456666777664
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0059 Score=66.90 Aligned_cols=40 Identities=8% Similarity=-0.125 Sum_probs=25.0
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
...+-++|.++-++..- +.-........++|||++ +++++
T Consensus 214 ~~~vSvID~etmeV~~q--V~Vdgnpd~v~~spdGk~----afvTs 253 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQ--VMVDGNLDNVDTDYDGKY----AFSTC 253 (635)
T ss_pred eEEEEEEECccceEEEE--EEeCCCcccceECCCCCE----EEEec
Confidence 46677788887654332 122224566789999996 66554
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0054 Score=66.57 Aligned_cols=296 Identities=10% Similarity=0.047 Sum_probs=149.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCC-----CCeEEEEe
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSD-----ETLIAYVA 171 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-----g~~la~~~ 171 (771)
..+....+++|+..++++..+. +..+|+- .+..++..+..... +..+-++ |.++..++
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDk-----vi~vwd~~~~~~l~~lp~ye~~E----------~vv~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDK-----VIIVWDLVQYKKLKTLPLYESLE----------SVVRLREELGGKGEYIITAG 257 (775)
T ss_pred hheeeeeeccCCceEEEeccCc-----EEEEeehhhhhhhheechhhhee----------eEEEechhcCCcceEEEEec
Confidence 4578899999999998875544 8888843 23333444433332 3333333 33444444
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCC-CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEE-Eec
Q 004149 172 EEPSPSKPTFSLGSTKGGSSDKDCN-SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV-WAP 249 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~-wsp 249 (771)
+....+ +|.........+..... .-.....+.+.-+..+......+|+++|.++.++..-. ...+..+.+.. |-|
T Consensus 258 ~~g~~~--~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-vG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 258 GSGVVQ--YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-VGYNDEILDMKFLGP 334 (775)
T ss_pred CCceEE--EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh-cCCchhheeeeecCC
Confidence 333221 22211111111000000 00111122222233333445688999998887764431 22223344554 567
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~ 329 (771)
+.+. |+..+|. .+|.++++ .+..+.-+..+...+.+...+-+|-
T Consensus 335 e~~~----laVATNs---------------~~lr~y~~-----------------~~~~c~ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 335 EESH----LAVATNS---------------PELRLYTL-----------------PTSYCQIIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred ccce----EEEEeCC---------------CceEEEec-----------------CCCceEEEeCchhheeeeeecccCc
Confidence 7776 7776632 24555576 5566666666666666666444555
Q ss_pred EEEEEecCCCCCCCCccccccceeeecC-----------------------C-CCCCCCccceeeEEecccccC--CCCC
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWP-----------------------T-NGNFSSLEKIVDVIPVVQCAE--GDCF 383 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~-----------------------~-~~~~~~~~~~~~~~~~~~~~~--~~~f 383 (771)
.|+..+.+. ...||++|-. . +....++...+-++++|..++ +..+
T Consensus 379 llat~sKD~---------svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 379 LLATGSKDK---------SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred EEEEecCCc---------eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 555444432 1233433111 1 111123334445677777665 2233
Q ss_pred ccc---------ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeeEEeecCCEEEEEEeC
Q 004149 384 PGL---------YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 384 ~g~---------~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~d~~~l~~~~s~ 453 (771)
|-. ++-.+..++.+|+.+ |+.+.+.+....||.++ .+.+.-...+ .-.+....|++..+ +++++|+
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~Sg 525 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSG 525 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc--CceEEEEeeCCccceEEEEeccccc-eeEeccC
Confidence 321 233466788999987 77888888888999776 3444433333 22444456776544 5555544
Q ss_pred CCCCCeEEE
Q 004149 454 PVDVPQVKY 462 (771)
Q Consensus 454 ~~~p~~l~~ 462 (771)
- ..-.||-
T Consensus 526 D-~TvKIW~ 533 (775)
T KOG0319|consen 526 D-KTVKIWS 533 (775)
T ss_pred C-ceEEEEE
Confidence 3 3333443
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.5e-05 Score=50.29 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=24.1
Q ss_pred eecCCCCccccceeecCCCCEEEEEecCC
Q 004149 310 VNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 310 ~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++++........|.|||||++|+|.+++.
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCC
Confidence 56777888899999999999999999885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00054 Score=67.89 Aligned_cols=211 Identities=13% Similarity=0.066 Sum_probs=127.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc-c---eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-L---EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
..+..++|+..|+.||-.+.+- . ..+|+-.+ . +.+...... ++.+.|-|-|.+|+..+.+.
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl--~---~~LWd~~~~~~c~ks~~gh~h~----------vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDL--S---AKLWDFDTFFRCIKSLIGHEHG----------VSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred cceeEEEEecCccEEEecCCcc--c---hhheeHHHHHHHHHHhcCcccc----------eeeEEEEecCCeeeeccccc
Confidence 4588899999999998765432 1 34452221 1 111111222 26889999999998888777
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
+.+ .|....+-.......+..|..-+....|+.-..+......|.+|-+++++.+.+. ...+..+.-.+|.|....-
T Consensus 216 tik--~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 216 TIK--AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYP 292 (406)
T ss_pred cee--EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCc
Confidence 654 3443334444455556667777777777555555667789999999998654442 2334445556666653220
Q ss_pred ccEEEEEeecCcceeeeeeee--ccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYC--YNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.|-+.+ +...|..+| ..++..|-.+|+ .++. +-.|..+..-+++.+|||-|++|
T Consensus 293 --~i~~at----~~~~~~~~l~s~SrDktIk~wdv-----------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 293 --SISEAT----GSTNGGQVLGSGSRDKTIKIWDV-----------------STGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred --chhhcc----CCCCCccEEEeecccceEEEEec-----------------cCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 011100 000000111 124456777787 5554 35566677779999999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+-...+. .|.+||+++.+-
T Consensus 350 ~ScaDDk-----------tlrvwdl~~~~c 368 (406)
T KOG0295|consen 350 LSCADDK-----------TLRVWDLKNLQC 368 (406)
T ss_pred EEEecCC-----------cEEEEEecccee
Confidence 8887664 488999887654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.018 Score=58.42 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=70.4
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-----ec-CC
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-----NL-TE 314 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~l-t~ 314 (771)
-...+.++.++.+ ++|++ ..+.||.+|+. +...+ .+ +.
T Consensus 185 ~f~~~~~~~~~~~----~~F~S---------------y~G~v~~~dls-----------------g~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 185 LFEHPAYSRDGGR----LYFVS---------------YEGNVYSADLS-----------------GDSAKFGKPWSLLTD 228 (342)
T ss_dssp B-S--EEETTTTE----EEEEB---------------TTSEEEEEEET-----------------TSSEEEEEEEESS-H
T ss_pred cccccceECCCCe----EEEEe---------------cCCEEEEEecc-----------------CCcccccCcccccCc
Confidence 3456778888877 99988 34589999983 22211 11 11
Q ss_pred C-------CccccceeecCCCCEEEEEecCCCCCCCCcc-ccccceeeecCCCCCCCCccceeeEEecccccCCCCCccc
Q 004149 315 S-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 315 ~-------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
. .+...-.++++..+.|+.+-+... .|.|. ...+||++|+++++...-..-..
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~--~gsHKdpgteVWv~D~~t~krv~Ri~l~~----------------- 289 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGG--EGSHKDPGTEVWVYDLKTHKRVARIPLEH----------------- 289 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-TTS-EEEEEEEETTTTEEEEEEEEEE-----------------
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCC--CCCccCCceEEEEEECCCCeEEEEEeCCC-----------------
Confidence 0 111223567776666665544321 23332 23589999999876522111000
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004149 387 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 387 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
...++..|.|.+-++|..+. +...|+.+|..+|+..+-...-+
T Consensus 290 ---~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 290 ---PIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp ---EESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE---S
T ss_pred ---ccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeehhccC
Confidence 01245678888867666543 44578889999998876655444
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=71.26 Aligned_cols=197 Identities=18% Similarity=0.172 Sum_probs=108.2
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC--cceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCC
Q 004149 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 174 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~ 174 (771)
.+.+...+||.++- |+-.+-++ ...+|.-+ +..+++....-+ .+++|.| |.++++-.+-
T Consensus 369 t~DILDlSWSKn~f-LLSSSMDK-----TVRLWh~~~~~CL~~F~HndfV----------TcVaFnPvDDryFiSGSL-- 430 (712)
T KOG0283|consen 369 TADILDLSWSKNNF-LLSSSMDK-----TVRLWHPGRKECLKVFSHNDFV----------TCVAFNPVDDRYFISGSL-- 430 (712)
T ss_pred chhheecccccCCe-eEeccccc-----cEEeecCCCcceeeEEecCCee----------EEEEecccCCCcEeeccc--
Confidence 35678888888763 43443333 46666222 223344333333 6999999 6666655332
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
+.-+.+|++...++..- ..-...+..++++|||+.
T Consensus 431 ------------------------------------------D~KvRiWsI~d~~Vv~W--~Dl~~lITAvcy~PdGk~- 465 (712)
T KOG0283|consen 431 ------------------------------------------DGKVRLWSISDKKVVDW--NDLRDLITAVCYSPDGKG- 465 (712)
T ss_pred ------------------------------------------ccceEEeecCcCeeEee--hhhhhhheeEEeccCCce-
Confidence 35677788777766555 444457889999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEe-cccccchhhhhhhhcCCCCCCcceecCCC----CccccceeecCCC-
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVR-VSLYKSEASELELKESSSEDLPVVNLTES----ISSAFFPRFSPDG- 328 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~lt~~----~~~~~~p~~SpDG- 328 (771)
.+..+ +++.+.+|... +.- .......+... ...+....|.|-.
T Consensus 466 ---avIGt-------------~~G~C~fY~t~~lk~---------------~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 466 ---AVIGT-------------FNGYCRFYDTEGLKL---------------VSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred ---EEEEE-------------eccEEEEEEccCCeE---------------EEeeeEeeccCccccCceeeeeEecCCCC
Confidence 55544 33434444321 000 00001111110 1135556665432
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC-CCCCCccccCCCEEEEEe
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~~~s~dg~~l~~~~ 407 (771)
+.|+.++++ ++|.++|+........ |.|.... +.....|+.||++|+..+
T Consensus 515 ~~vLVTSnD-----------SrIRI~d~~~~~lv~K------------------fKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 515 DEVLVTSND-----------SRIRIYDGRDKDLVHK------------------FKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred CeEEEecCC-----------CceEEEeccchhhhhh------------------hcccccCCcceeeeEccCCCEEEEee
Confidence 256677765 4689998755444322 2222111 234567999999998776
Q ss_pred eeCCeeEEEEE
Q 004149 408 IWGSSQVIISV 418 (771)
Q Consensus 408 ~~~~~~~l~~~ 418 (771)
.+....||.+
T Consensus 566 -eDs~VYiW~~ 575 (712)
T KOG0283|consen 566 -EDSWVYIWKN 575 (712)
T ss_pred -cCceEEEEeC
Confidence 5555556654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.011 Score=61.51 Aligned_cols=155 Identities=16% Similarity=0.099 Sum_probs=85.4
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
....+++|.++.....+ ......+.-+.+||||.. |+..+ .+..||++.++.
T Consensus 427 ~G~w~V~d~e~~~lv~~--~~d~~~ls~v~ysp~G~~----lAvgs---------------~d~~iyiy~Vs~------- 478 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTI--HTDNEQLSVVRYSPDGAF----LAVGS---------------HDNHIYIYRVSA------- 478 (626)
T ss_pred cceEEEEecccceeEEE--EecCCceEEEEEcCCCCE----EEEec---------------CCCeEEEEEECC-------
Confidence 46789999998776666 333556778899999998 88876 222555555421
Q ss_pred hhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++....++-... ..+....||+|+++|.-.+.+ .+|..| ..++..+++.-.+.--...
T Consensus 479 --------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d-----------~eiLyW--~~~~~~~~ts~kDvkW~t~ 537 (626)
T KOG2106|consen 479 --------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD-----------YEILYW--KPSECKQITSVKDVKWATY 537 (626)
T ss_pred --------CCcEEEEeeeecCceeEEeeecCCCceEEeccCc-----------eEEEEE--ccccCcccceecceeeeee
Confidence 333444443222 457889999999987654432 456555 3444444443111000000
Q ss_pred cccCC-CCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 376 QCAEG-DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 376 ~~~~~-~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
.+.-. .-|-|.....+...+-|.+.+ |+.+....+..+||++...
T Consensus 538 ~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 538 TCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred EEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccC
Confidence 00000 001111222233445555655 5566666778888887653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.018 Score=59.83 Aligned_cols=259 Identities=13% Similarity=0.124 Sum_probs=136.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|.++|+-|. . ++...+.+| .++. ..+... ...|. +.++.---||+.|- ...+.
T Consensus 247 k~Vl~v~F~engdviT--g----DS~G~i~Iw~~~~~~~~k~~~---aH~gg------v~~L~~lr~GtllS-GgKDR-- 308 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVIT--G----DSGGNILIWSKGTNRISKQVH---AHDGG------VFSLCMLRDGTLLS-GGKDR-- 308 (626)
T ss_pred eEEEEEEEcCCCCEEe--e----cCCceEEEEeCCCceEEeEee---ecCCc------eEEEEEecCccEee-cCccc--
Confidence 4578889999998663 1 333467778 3332 222221 11112 25777888887554 22221
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+...|+....+.... +-+......-..-+..++.+++..++.|..=.++++-...+. -.......++-.|+...
T Consensus 309 ki~~Wd~~y~k~r~~-elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q--- 382 (626)
T KOG2106|consen 309 KIILWDDNYRKLRET-ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQ--- 382 (626)
T ss_pred eEEeccccccccccc-cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhh---
Confidence 223344222211111 111111111112233355777777777777777666443331 11224556777888776
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++..+- ..++.+++- .--+-.++.. .......|.|-| .|+....
T Consensus 383 -~~T~gq---------------dk~v~lW~~-----------------~k~~wt~~~~--d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 383 -LLTCGQ---------------DKHVRLWND-----------------HKLEWTKIIE--DPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred -eeeccC---------------cceEEEccC-----------------CceeEEEEec--CceeEeeccCcc-eEEEeec
Confidence 665541 123444431 1122233333 235667899999 6765543
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
. .+.+++|.++.....+-... ..+.-+.++|||..|++ .+.++...||
T Consensus 427 ~-----------G~w~V~d~e~~~lv~~~~d~--------------------~~ls~v~ysp~G~~lAv-gs~d~~iyiy 474 (626)
T KOG2106|consen 427 T-----------GRWFVLDTETQDLVTIHTDN--------------------EQLSVVRYSPDGAFLAV-GSHDNHIYIY 474 (626)
T ss_pred c-----------ceEEEEecccceeEEEEecC--------------------CceEEEEEcCCCCEEEE-ecCCCeEEEE
Confidence 3 35778887764332211110 12456789999997654 4567778899
Q ss_pred EEECCCCcEEEecCCCC-CceeeEEeecCCEEEE
Q 004149 417 SVNVSSGELLRITPAES-NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~ 449 (771)
+++.++.+..++-.-.+ .+....||+|++.+.-
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 99987766666643332 3344578888886653
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0072 Score=69.19 Aligned_cols=224 Identities=16% Similarity=0.218 Sum_probs=124.6
Q ss_pred cceEEEeCCCCCeEEEEecCCC-----CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
....+..+|+|+.++|+...-+ ....+|... +...+........ ..+.|||||+.+++.....
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~----------~~~~~spdg~~~~~~~~~~ 81 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSD--GKTVRLLTFGGGV----------SELRWSPDGSVLAFVSTDG 81 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEe--cccccccccCCcc----------cccccCCCCCEEEEEeccC
Confidence 4667899999999999987511 223344322 1111122212222 5899999999999986222
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
. ...++|+++.. + .+ ......+....|+|+|+.
T Consensus 82 ~----------------------------------------~~~~l~l~~~~-g---~~--~~~~~~v~~~~~~~~g~~- 114 (620)
T COG1506 82 G----------------------------------------RVAQLYLVDVG-G---LI--TKTAFGVSDARWSPDGDR- 114 (620)
T ss_pred C----------------------------------------CcceEEEEecC-C---ce--eeeecccccceeCCCCCe-
Confidence 1 24789999988 4 33 233446677899999999
Q ss_pred ccEEEEEeecCcceeeee----------eeec-c-CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccce
Q 004149 255 HQYLVFVGWSSETRKLGI----------KYCY-N-RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 322 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~----------~~~~-~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p 322 (771)
+++..-.....+.+. .+.. . ...++|.+|. ++ ....+......+..+
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~-----------------~~-~~~~~~~~~~~~~~~ 173 (620)
T COG1506 115 ---IAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI-----------------ES-KLIKLGLGNLDVVSF 173 (620)
T ss_pred ---EEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc-----------------Cc-ccccccCCCCceeee
Confidence 998432222111111 1111 1 3457888886 33 555555566667778
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
+++++++.++......... ......+.....++....++.+.. +...+.|.+||+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~gk~ 229 (620)
T COG1506 174 ATDGDGRLVASIRLDDDAD----PWVTNLYVLIEGNGELESLTPGEG--------------------SISKLAFDADGKS 229 (620)
T ss_pred eeCCCCceeEEeeeccccC----CceEeeEEEecCCCceEEEcCCCc--------------------eeeeeeeCCCCCe
Confidence 8888888777776654200 111222333223333322222211 2346678899997
Q ss_pred EEEEeeeCC-----eeEEEEEECCCCcEEE
Q 004149 403 MLLSSIWGS-----SQVIISVNVSSGELLR 427 (771)
Q Consensus 403 l~~~~~~~~-----~~~l~~~d~~tg~~~~ 427 (771)
+++...... ...++.++...++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 259 (620)
T COG1506 230 IALLGTESDRGLAEGDFILLLDGELGEVDG 259 (620)
T ss_pred eEEeccCCccCccccceEEEEeccccccce
Confidence 776665332 1235555534444444
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.005 Score=69.73 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=60.6
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCcceEE-EecCCcccccccCCCcccceeecCCCCeEEE-EecCCCCCCCCccCCCCC
Q 004149 111 SKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~-~~~~~~~~~~~~~~~~~~ 187 (771)
.+|||+.+.. + .+..++ ++.+.+.+ +.....+ -.|.|||||++||| ++.....
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 4789987643 1 688888 55565555 4443333 48999999999999 6544311
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+.+.||+.|+.+.. +..|. -....+-.......|... |+|++.-
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~--ve~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP--VENAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee--cccccccceEecCCCCeE---EEEEcCC
Confidence 34779999987643 33441 122233334446777764 8888743
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=65.83 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=140.0
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeecc
Q 004149 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVK 234 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~ 234 (771)
..-+.|+...++..+++.+.+ .|+...+........+..-..++.|...+.....-..+-.+.+||.++- ..+.+
T Consensus 113 ~v~~hp~~~~v~~as~d~tik--v~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~- 189 (406)
T KOG0295|consen 113 RVIFHPSEALVVSASEDATIK--VFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL- 189 (406)
T ss_pred eeeeccCceEEEEecCCceEE--EEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-
Confidence 444556554444433444332 2222222222233333333445555555333333333444788887663 23333
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT 313 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt 313 (771)
...+..+..+.|-|-|.. |+-.+ ++..|..+++ +++. ...++
T Consensus 190 -~gh~h~vS~V~f~P~gd~----ilS~s---------------rD~tik~We~-----------------~tg~cv~t~~ 232 (406)
T KOG0295|consen 190 -IGHEHGVSSVFFLPLGDH----ILSCS---------------RDNTIKAWEC-----------------DTGYCVKTFP 232 (406)
T ss_pred -cCcccceeeEEEEecCCe----eeecc---------------cccceeEEec-----------------ccceeEEecc
Confidence 455667889999999987 77665 3446777777 5565 45666
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+..-+..++.+-||..++-.+++. .|.+|-+.+++-+.+..+...+++.+........| ++..
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dq-----------tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~-----~i~~ 296 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQ-----------TLRVWVVATKQCKAELREHEHPVECIAWAPESSYP-----SISE 296 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCc-----------eEEEEEeccchhhhhhhccccceEEEEecccccCc-----chhh
Confidence 6666788999999999877666553 46677667765444433333333333222222222 2222
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 394 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
..-+.|+..++++.+++...++| |+.+|..- .|......+...+|+|.|++|+-++.+- .|.+.++...
T Consensus 297 at~~~~~~~~l~s~SrDktIk~w--dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk----tlrvwdl~~~ 366 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIW--DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK----TLRVWDLKNL 366 (406)
T ss_pred ccCCCCCccEEEeecccceEEEE--eccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC----cEEEEEeccc
Confidence 23344566677888888877777 55566533 3334444567789999999887666432 3555565543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0028 Score=69.65 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=69.5
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..-....|.++|..+.++.+.- ......+.++.||||||+ |+..+ .++.|..+|+
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisas---------------mD~tIr~wDl----- 605 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISAS---------------MDSTIRTWDL----- 605 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEee---------------cCCcEEEEec-----
Confidence 3445678999999888765551 224457889999999999 99877 3457999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
.++...--..-+..+.+.+|||.|.+||....+. ..||+|.
T Consensus 606 ------------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~----------~gIylWs 646 (910)
T KOG1539|consen 606 ------------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ----------NGIYLWS 646 (910)
T ss_pred ------------cCcceeeeEecCCcceeeEECCCCCEEEEEEecC----------ceEEEEE
Confidence 5555433333345578899999999999887653 3477774
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.02 Score=57.44 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=82.9
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCc
Q 004149 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESIS 317 (771)
Q Consensus 239 ~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~ 317 (771)
...+.++.|++ ... ++-++|.+ .|..+|+ .++. ...++ ...
T Consensus 260 t~~Vs~V~w~d-~~v----~yS~SwDH---------------TIk~WDl-----------------etg~~~~~~~-~~k 301 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATV----IYSVSWDH---------------TIKVWDL-----------------ETGGLKSTLT-TNK 301 (423)
T ss_pred ccceeeEEEcC-CCc----eEeecccc---------------eEEEEEe-----------------ecccceeeee-cCc
Confidence 34678899998 333 55555533 5788888 4444 33443 344
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.......+|..+.|+-.+.+ ..|.++|..++....+.. .|-|. ..-+..+.|+
T Consensus 302 sl~~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~---------------s~~gH-~nwVssvkws 354 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQ---------------SLIGH-KNWVSSVKWS 354 (423)
T ss_pred ceeEeecccccceeeecCCC-----------CceeecCCCCCCCceeEE---------------eeecc-hhhhhheecC
Confidence 56778889988877655544 358889987765422111 11111 1135678899
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC
Q 004149 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
|-...++++.+.++...||-+.-..+-+..|...
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 9999999999999999999776555556666544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=65.99 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=110.2
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004149 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
+.+.++|+.|..+-.= +.++|..+..-++.+..++.+++++.+.-.. . -.+...-+.+-..
T Consensus 132 ~~~a~v~~~l~~~g~~-------------k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~----l~e~~~~~eV~DL 192 (398)
T KOG0771|consen 132 ETAANVYQKLVDFGQQ-------------KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--I----LEEIAHHAEVKDL 192 (398)
T ss_pred hhhhhHhHHHhhcCcc-------------eEEEEcCCCCEeeeccccceEEEEecCcchh--h----hhhHhhcCccccc
Confidence 3566677666543322 2233333333333444556777765422211 0 1112222567889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCC---CeEEEEecCCCCCCCCc
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg---~~la~~~~~~~~~~~~~ 181 (771)
.|||||+.|+++... ...+|.+.++-...+.++... |.-|....|+-|+ ...++....+...
T Consensus 193 ~FS~dgk~lasig~d---~~~VW~~~~g~~~a~~t~~~k--------~~~~~~cRF~~d~~~~~l~laa~~~~~~~---- 257 (398)
T KOG0771|consen 193 DFSPDGKFLASIGAD---SARVWSVNTGAALARKTPFSK--------DEMFSSCRFSVDNAQETLRLAASQFPGGG---- 257 (398)
T ss_pred eeCCCCcEEEEecCC---ceEEEEeccCchhhhcCCccc--------chhhhhceecccCCCceEEEEEecCCCCc----
Confidence 999999999998653 233444433322233332221 2345678898887 3233322221110
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
.....+.+|+-. -...++. +.....+..+.-|+||+. ++.
T Consensus 258 ---------------------------------v~~~~~~~w~~~~~l~~~~~--~~~~~siSsl~VS~dGkf----~Al 298 (398)
T KOG0771|consen 258 ---------------------------------VRLCDISLWSGSNFLRLRKK--IKRFKSISSLAVSDDGKF----LAL 298 (398)
T ss_pred ---------------------------------eeEEEeeeeccccccchhhh--hhccCcceeEEEcCCCcE----EEE
Confidence 011233334321 1122333 444557889999999997 777
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecCC
Q 004149 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+.+ ..+-+++. ..-+..++. .+...+....||||.+.++-++.+.
T Consensus 299 GT~d---------------GsVai~~~-----------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 299 GTMD---------------GSVAIYDA-----------------KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred eccC---------------CcEEEEEe-----------------ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 7632 24555554 333333332 2445789999999999998877654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0018 Score=67.38 Aligned_cols=96 Identities=11% Similarity=0.214 Sum_probs=67.6
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+-.|||||.-|+.+.++ ..|-+|.-. |-.+...
T Consensus 108 ~~gRW~~dGtgLlt~GED--------------------------------------------G~iKiWSrs-GMLRStl- 141 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED--------------------------------------------GVIKIWSRS-GMLRSTV- 141 (737)
T ss_pred hhcccCCCCceeeeecCC--------------------------------------------ceEEEEecc-chHHHHH-
Confidence 577899999999887554 455666643 3322221
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
......+..++|.|++.. ++|.. ..++++-.+. ....+.+-..+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~----vl~c~----------------g~h~~IKpL~----------------~n~k~i~WkAH 185 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNS----IVFCQ----------------GGHISIKPLA----------------ANSKIIRWRAH 185 (737)
T ss_pred hhcCceeEEEEECCCCCc----eEEec----------------CCeEEEeecc----------------cccceeEEecc
Confidence 334456778999999999 99975 1378887772 33455666678
Q ss_pred CccccceeecCCCCEEEE
Q 004149 316 ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f 333 (771)
++-+.+..|||....|+.
T Consensus 186 DGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred CcEEEEeecCccccceee
Confidence 888999999999887654
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00022 Score=76.49 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=64.7
Q ss_pred CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004149 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 553 ~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
..|...++.|.+.||.+ ..|++| +|.+|+... .....++++.+.++.+.+.. ...+|.|+||||||.++..
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 46778899999999976 789998 666665421 11223567777777776652 3468999999999999999
Q ss_pred HHHhCCCc----eeEEEecCCc
Q 004149 633 LIGQAPDK----FVAAAARNPL 650 (771)
Q Consensus 633 ~a~~~p~~----~~a~v~~~p~ 650 (771)
++..+|+. ++..|++++.
T Consensus 179 fl~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHHCCHhHHhHhccEEEECCC
Confidence 99888763 5666666553
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0055 Score=58.43 Aligned_cols=207 Identities=17% Similarity=0.175 Sum_probs=110.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCC-----cEEEEECCCCCCCC----ChhhhhcC-------CCCccccchhhH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGF----GEEALQSL-------PGKVGSQDVNDV 600 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G-----~~V~~~d~rG~~~~----g~~~~~~~-------~~~~~~~~~~D~ 600 (771)
.| .||+||.++. ...+...+..|...+ -.++.+|--|+-.. .....+.. ....+.....=+
T Consensus 46 iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wl 122 (288)
T COG4814 46 IP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWL 122 (288)
T ss_pred cc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHH
Confidence 44 6889996655 335556666665554 45666776654211 11111100 001111113345
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
..++.+|.+++.+ .++-++||||||.....++..+.+ .+...|.+++.++.....+-....+
T Consensus 123 k~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~----------- 189 (288)
T COG4814 123 KKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTD----------- 189 (288)
T ss_pred HHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchhe-----------
Confidence 6778889888644 678999999999999999886521 2445555554443111111000000
Q ss_pred CCcCCCCC--ChhhHHHHhhcCccccccCC--CCcEEEEeeCCCC------ccCcHHHHHHHHHHHhCCCCEEEEEeCC-
Q 004149 676 KDSFTESP--SVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDL------RVPVSNGLQYARALREKGVETKVIVFPN- 744 (771)
Q Consensus 676 ~~~~~~~~--~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~------~vp~~~~~~~~~~l~~~g~~~~~~~~~~- 744 (771)
.....+ .......|+.. ...++ ++-+|+|.|+-|. .||...+...+..+...+...+-.+|++
T Consensus 190 --v~~~~~~~~~t~y~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk 263 (288)
T COG4814 190 --VLKDGPGLIKTPYYDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGK 263 (288)
T ss_pred --eeccCccccCcHHHHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCC
Confidence 000000 00111111111 11112 3569999998654 5888888888888888766655545555
Q ss_pred -CCccCCCCCChHHHHHHHHHHHH
Q 004149 745 -DVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 745 -~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.|.-. +++ ..+...+..||-
T Consensus 264 ~a~Hs~l-hen-~~v~~yv~~FLw 285 (288)
T COG4814 264 DARHSKL-HEN-PTVAKYVKNFLW 285 (288)
T ss_pred cchhhcc-CCC-hhHHHHHHHHhh
Confidence 567644 333 256677777764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0021 Score=60.86 Aligned_cols=251 Identities=12% Similarity=0.067 Sum_probs=133.8
Q ss_pred ceEEEeCC--CCCeEEEEecC-C--CCCCeEEEEe-cCCcceEEEe---cCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 101 ASAVVPSP--SGSKLLVVRNP-E--NESPIQFELW-SQSQLEKEFH---VPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 101 ~~~~~~SP--dG~~la~~~~~-~--~~~~~~~~~~-~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
...+.||| ++ +||..... - .+...++++. +++...++.. ...+. -.++||+.-..+++++
T Consensus 11 GysvqfSPf~~n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~L----------fdV~Wse~~e~~~~~a 79 (311)
T KOG0277|consen 11 GYSVQFSPFVEN-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGL----------FDVAWSENHENQVIAA 79 (311)
T ss_pred cceeEecccccc-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccce----------eEeeecCCCcceEEEE
Confidence 34678888 33 34443221 1 2555677776 3333222222 12222 3889999888887776
Q ss_pred cCCCCCCCCccCCC-CCCCCCCccCCCCCCcccccCCcCccc-CCccCceEEEEEccCCceeeccCCCCCCccceEEEec
Q 004149 172 EEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 249 (771)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp 249 (771)
..... ...|+... .......+.++.-.....|.+-|++.+ +..-+..|-+|+...++-...- ......+-++.|||
T Consensus 80 ~GDGS-Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 80 SGDGS-LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSP 157 (311)
T ss_pred ecCce-EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCC
Confidence 43321 11233111 112223333333333333444433332 2233567778877655432221 34556788999999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~ 329 (771)
--.. ++-.. ..++.+-++|+. ..|+...+..+...+....||.-..
T Consensus 158 ~~~n----lfas~--------------Sgd~~l~lwdvr----------------~~gk~~~i~ah~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 158 HIPN----LFASA--------------SGDGTLRLWDVR----------------SPGKFMSIEAHNSEILCCDWSKYNH 203 (311)
T ss_pred CCCC----eEEEc--------------cCCceEEEEEec----------------CCCceeEEEeccceeEeecccccCC
Confidence 7665 54333 122344444442 3355544666666778889998777
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~ 409 (771)
.+++....+ .-|+.||+..=.. .+ ..+. . +...+..+.|||-...|+.+.+.
T Consensus 204 ~vl~Tg~vd----------~~vr~wDir~~r~-pl-------~eL~----g------h~~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 204 NVLATGGVD----------NLVRGWDIRNLRT-PL-------FELN----G------HGLAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred cEEEecCCC----------ceEEEEehhhccc-cc-------eeec----C------CceEEEEEecCcchhhHhhhccc
Confidence 777776543 4577888754221 01 0000 0 00124577899999989999988
Q ss_pred CCeeEEEEEECCCCcEE
Q 004149 410 GSSQVIISVNVSSGELL 426 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~ 426 (771)
+...+||..-...+.++
T Consensus 256 DmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIE 272 (311)
T ss_pred cceEEecccccchhhhh
Confidence 88888886554333333
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0064 Score=61.18 Aligned_cols=146 Identities=14% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC
Q 004149 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 316 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~ 316 (771)
....++.+.|.|-... +++++- ....|.++++ .+|+ ...|. +.
T Consensus 130 H~rrVg~V~wHPtA~N----VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hp 173 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPN----VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HP 173 (472)
T ss_pred cceeEEEEeecccchh----hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CC
Confidence 3446788999999887 777651 2237888887 5665 45555 77
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004149 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
..+.+..|+-||+.|+....+. .|.++|..+++.... .. ...| .......|
T Consensus 174 d~i~S~sfn~dGs~l~TtckDK-----------kvRv~dpr~~~~v~e--~~-------------~heG---~k~~Raif 224 (472)
T KOG0303|consen 174 DMVYSMSFNRDGSLLCTTCKDK-----------KVRVIDPRRGTVVSE--GV-------------AHEG---AKPARAIF 224 (472)
T ss_pred CeEEEEEeccCCceeeeecccc-----------eeEEEcCCCCcEeee--cc-------------cccC---CCcceeEE
Confidence 7899999999999998777654 588999877664211 10 0000 12345668
Q ss_pred ccCCCEEEEEee--eCCeeEEEEEECCC----CcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 397 LSDGCTMLLSSI--WGSSQVIISVNVSS----GELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 397 s~dg~~l~~~~~--~~~~~~l~~~d~~t----g~~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
..+|+ | +++. ..+..++-.+|.+. +..+.|..+.+ +-.+.+++|.+.+|.+.
T Consensus 225 l~~g~-i-~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 225 LASGK-I-FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCG 282 (472)
T ss_pred eccCc-e-eeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEe
Confidence 88987 4 4443 22344454455432 12333333333 45566777777666554
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00024 Score=47.82 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=24.3
Q ss_pred ceeecCCccccccceEEEeCCCCCeEEEEecCCC-CCCeEE
Q 004149 88 TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQF 127 (771)
Q Consensus 88 ~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-~~~~~~ 127 (771)
|+|..+ +.+..|+|||||++|+|++++.+ +..+||
T Consensus 3 ~~t~~~-----~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSP-----GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SS-----SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCC-----ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455555 56889999999999999998762 344444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0044 Score=65.81 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=73.2
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+..+.|.|=... ++.++ ..+..|-++|+. +....-+|..+.+.+.
T Consensus 679 KI~slRfHPLAad----vLa~a--------------syd~Ti~lWDl~----------------~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 679 KITSLRFHPLAAD----VLAVA--------------SYDSTIELWDLA----------------NAKLYSRLVGHTDQIF 724 (1012)
T ss_pred eEEEEEecchhhh----Hhhhh--------------hccceeeeeehh----------------hhhhhheeccCcCcee
Confidence 4667778775544 43333 123467777771 3445667888888999
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
+.+|||||+.|+.+-.+. .|++++-.+++. .+.++...+ ...-..+.|.=||
T Consensus 725 ~~AWSpdGr~~AtVcKDg-----------~~rVy~Prs~e~-pv~Eg~gpv----------------gtRgARi~wacdg 776 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDG-----------TLRVYEPRSREQ-PVYEGKGPV----------------GTRGARILWACDG 776 (1012)
T ss_pred EEEECCCCcceeeeecCc-----------eEEEeCCCCCCC-ccccCCCCc----------------cCcceeEEEEecC
Confidence 999999999999887653 488887665443 222221110 0112356798999
Q ss_pred CEEEEEeeeC-CeeEEEEEECCC
Q 004149 401 CTMLLSSIWG-SSQVIISVNVSS 422 (771)
Q Consensus 401 ~~l~~~~~~~-~~~~l~~~d~~t 422 (771)
+.|+++.-.. +..+|-++|..+
T Consensus 777 r~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 777 RIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cEEEEecccccchhhhhhhhhhh
Confidence 9887766433 233444445433
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0015 Score=57.92 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=80.4
Q ss_pred HHH-HHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCC
Q 004149 602 TAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFT 680 (771)
Q Consensus 602 ~~i-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (771)
+|+ +|+++.. =+.+..+-|.||||+.++.+..++|+++..+|+.+++.+...+++...-.+
T Consensus 88 ~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddD---------------- 149 (227)
T COG4947 88 RAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDD---------------- 149 (227)
T ss_pred HHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCc----------------
Confidence 444 4666653 245678899999999999999999999999999999998775543211111
Q ss_pred CCCChhhHHHHhhcCccccccCC----------CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 681 ESPSVEDLTRFHSKSPISHISKV----------KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i----------~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+ ..+|..++..+ +.-+.+..|..|+..+ +.+.+-+.|.++.++..+.+..+..|.
T Consensus 150 ---------v~-ynsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHd 215 (227)
T COG4947 150 ---------VY-YNSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHD 215 (227)
T ss_pred ---------ee-ecChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhcccccc
Confidence 01 13333333332 2457778899998874 456788888888888777777665553
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.059 Score=50.12 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=70.0
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
..+.||+-|-. .+.....++.+.+.+.. -+|-.|-.++-.+.+ ..|..||+.
T Consensus 161 gdc~iy~tdc~----------------~g~~~~a~sghtghila-lyswn~~m~~sgsqd-----------ktirfwdlr 212 (350)
T KOG0641|consen 161 GDCKIYITDCG----------------RGQGFHALSGHTGHILA-LYSWNGAMFASGSQD-----------KTIRFWDLR 212 (350)
T ss_pred CcceEEEeecC----------------CCCcceeecCCcccEEE-EEEecCcEEEccCCC-----------ceEEEEeee
Confidence 55689999971 23335666666665443 223345544433333 357777775
Q ss_pred CCCCCCCccceeeEEecccccCCCCC--cccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE-EEecCCCCC
Q 004149 358 TNGNFSSLEKIVDVIPVVQCAEGDCF--PGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESN 434 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f--~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~ 434 (771)
-....+ ++ +..| .|+-...+..++.-|.|+ |+.+...++.--||- +.+|.. ++.-+...+
T Consensus 213 v~~~v~----------~l----~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lyd--irg~r~iq~f~phsad 275 (350)
T KOG0641|consen 213 VNSCVN----------TL----DNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYD--IRGGRMIQRFHPHSAD 275 (350)
T ss_pred ccceee----------ec----cCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEE--eeCCceeeeeCCCccc
Confidence 433211 11 1111 112223345667778887 656665666666774 446654 444455556
Q ss_pred ceeeEEeecCCEEEEEE
Q 004149 435 FSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 435 ~~~~~~s~d~~~l~~~~ 451 (771)
+....|||...+++..+
T Consensus 276 ir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCS 292 (350)
T ss_pred eeEEEeCCCceEEEEec
Confidence 66678888766665444
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.002 Score=70.34 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=78.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch----------------HHHHHHHHCCcEEEEECCC-CCCCC
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS----------------KSLAFLSSVGYSLLIVNYR-GSLGF 580 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~----------------~~~~~la~~G~~V~~~d~r-G~~~~ 580 (771)
+..+..|++.... .....|+|++++|||+........ ....-+.+ -..++.+|.+ |. |+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~~~~l~iDqP~G~-G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-EAYVIYVDQPAGV-GF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-ccCeEEEeCCCCc-Cc
Confidence 4568888887663 345679999999999865311100 00001122 2577788865 53 33
Q ss_pred ChhhhhcCCCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHhC----------CCceeEEEecCC
Q 004149 581 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 649 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~----------p~~~~a~v~~~p 649 (771)
+...... .........+|+..+++.+.++ +.....+++|+|+||||..+..++.+- .-.++++++.+|
T Consensus 136 S~~~~~~-~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKAD-YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCC-CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 3221111 0111122367777777755543 334568899999999999988777541 113789999998
Q ss_pred ccch
Q 004149 650 LCNL 653 (771)
Q Consensus 650 ~~~~ 653 (771)
.++.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 7764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0067 Score=61.79 Aligned_cols=193 Identities=12% Similarity=0.115 Sum_probs=114.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+......|.|++++..++++ .|.+.+-..-..++.+..... +-.+.+..|.||| |+|..........
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s-----~v~~ts~~fHpDg--Lifgtgt~d~~vk 372 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETS-----DVEYTSAAFHPDG--LIFGTGTPDGVVK 372 (506)
T ss_pred cceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccc-----cceeEEeeEcCCc--eEEeccCCCceEE
Confidence 467788899999998877655 555553222233333211100 0123588999999 4554433333334
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.|+........++..+......+.|++++=...+...+..+.+||+..-+ .+.+. .+....+..+.|-+.|+. |
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~----L 447 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTY----L 447 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCe----E
Confidence 56654444455566666666777888875344444555669999986543 22222 344446778899998987 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..+ ..-+||+++- ++- .-.+...+....+....++|..+.++++-.+++.
T Consensus 448 ~~~g---------------~~l~Vy~~~k-----~~k---------~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 448 GIAG---------------SDLQVYICKK-----KTK---------SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred Eeec---------------ceeEEEEEec-----ccc---------cceeeehhhhcccccceeeecccceEEeeccchh
Confidence 7654 2226777763 000 1123344555555667788888888777666653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0086 Score=63.50 Aligned_cols=262 Identities=15% Similarity=0.133 Sum_probs=136.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE-ecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV-AEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~-~~~~~ 175 (771)
+.+...+..|.|.+||--++. + .+.+| .+|...+.+.+...+ .+++|+|.+..=+.+ +....
T Consensus 401 g~Vr~iSvdp~G~wlasGsdD--G---tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDD--G---TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CeEEEEEecCCcceeeecCCC--C---cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEecCc
Confidence 346778899999999865544 3 45555 456666666665544 699999998763332 22221
Q ss_pred CCCCCccCCCC------CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc------CCceeeccCCCCCCccc
Q 004149 176 PSKPTFSLGST------KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ------SGEVQAVKGIPKSLSVG 243 (771)
Q Consensus 176 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~------~~~~~~l~~~~~~~~~~ 243 (771)
........+ .+...+.... . . .....++..|.-. .| +... +.....+.
T Consensus 466 --~~ivnp~~G~~~e~~~t~ell~~~~--~---~----------~~p~~~~~~W~~~~~~e~~~~-v~~~--I~~~k~i~ 525 (733)
T KOG0650|consen 466 --VLIVNPIFGDRLEVGPTKELLASAP--N---E----------SEPDAAVVTWSRASLDELEKG-VCIV--IKHPKSIR 525 (733)
T ss_pred --eEEeCccccchhhhcchhhhhhcCC--C---c----------cCCcccceeechhhhhhhccc-eEEE--EecCCccc
Confidence 000111111 0000000000 0 0 0011234444322 22 2222 34445688
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccccee
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPR 323 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~ 323 (771)
++.|.-+|.+ |+.+.-.. .+..+++.+|+ .......+....+.+....
T Consensus 526 ~vtWHrkGDY----latV~~~~------------~~~~VliHQLS----------------K~~sQ~PF~kskG~vq~v~ 573 (733)
T KOG0650|consen 526 QVTWHRKGDY----LATVMPDS------------GNKSVLIHQLS----------------KRKSQSPFRKSKGLVQRVK 573 (733)
T ss_pred eeeeecCCce----EEEeccCC------------CcceEEEEecc----------------cccccCchhhcCCceeEEE
Confidence 9999999998 99887322 33478888873 2222233445566788889
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC-CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
|.|---+|+..+.+ .|.+||+..+... .+.++. .-+..++.+|.|.-
T Consensus 574 FHPs~p~lfVaTq~------------~vRiYdL~kqelvKkL~tg~--------------------kwiS~msihp~GDn 621 (733)
T KOG0650|consen 574 FHPSKPYLFVATQR------------SVRIYDLSKQELVKKLLTGS--------------------KWISSMSIHPNGDN 621 (733)
T ss_pred ecCCCceEEEEecc------------ceEEEehhHHHHHHHHhcCC--------------------eeeeeeeecCCCCe
Confidence 99988877665544 3888888764431 111111 12456778898888
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004149 403 MLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~ 462 (771)
|++.+. +...--|-+|+.+.-.+.+......+ ...+-+++.-+|+..+.+..-.++.
T Consensus 622 li~gs~-d~k~~WfDldlsskPyk~lr~H~~av--r~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 622 LILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAV--RSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEEecC-CCeeEEEEcccCcchhHHhhhhhhhh--hhhhhccccceeeeecCCCcEEEEe
Confidence 876653 33333333455444444443222211 2223344444455444444433443
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0061 Score=66.66 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=53.4
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhC-CC-------CEEEEEeCCCCccCCCC-CChHHHHHHHHHHHHH
Q 004149 705 TPTIFLLGAQDLRVPVSNGLQYARALREK-GV-------ETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKK 768 (771)
Q Consensus 705 ~P~Lii~G~~D~~vp~~~~~~~~~~l~~~-g~-------~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~wl~~ 768 (771)
-.+|+.||..|..||+..+..+|+++.+. +. -.++.++||.+|+...+ ....+.+..+.+|.++
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 68999999999999999999999998765 21 26899999999987654 3345789999999875
|
It also includes several bacterial homologues of unknown function. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0097 Score=57.94 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=121.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc--cceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS--VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
+.++-..|.|.....-|..+.+++.+.++|......+. .-++ +...+...+|.|.|.+|+...+.. ...+
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q------d~~~vrsiSfHPsGefllvgTdHp--~~rl 242 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ------DTEPVRSISFHPSGEFLLVGTDHP--TLRL 242 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh------ccceeeeEeecCCCceEEEecCCC--ceeE
Confidence 34566788888888888888888888888875442211 1111 224588899999999998754433 2233
Q ss_pred EEEecCCcceEEEec-CC-cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 127 FELWSQSQLEKEFHV-PQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 127 ~~~~~~~~~~~~~~~-~~-~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
|.+.. ..-.... +. ...+.| .++..|+.|+.-+..+
T Consensus 243 Ydv~T---~QcfvsanPd~qht~ai------~~V~Ys~t~~lYvTaS--------------------------------- 280 (430)
T KOG0640|consen 243 YDVNT---YQCFVSANPDDQHTGAI------TQVRYSSTGSLYVTAS--------------------------------- 280 (430)
T ss_pred Eeccc---eeEeeecCcccccccce------eEEEecCCccEEEEec---------------------------------
Confidence 33331 1111111 22 222233 5788999887333322
Q ss_pred cCCcCcccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004149 205 EEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
++..|-+||--+++... +....+...+.++.|+.+||. |+-.+ .++-++
T Consensus 281 -----------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky----iLsSG---------------~DS~vk 330 (430)
T KOG0640|consen 281 -----------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY----ILSSG---------------KDSTVK 330 (430)
T ss_pred -----------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE----EeecC---------------Ccceee
Confidence 34678888866555433 322234457889999999998 77665 233555
Q ss_pred EEecccccchhhhhhhhcCCCCCCcce-ecCCC-----CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 284 AVRVSLYKSEASELELKESSSEDLPVV-NLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-----~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
++.+ .++... .-+.. ........|+....++.|..... ..|..||..
T Consensus 331 LWEi-----------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas----------~slcsWdaR 383 (430)
T KOG0640|consen 331 LWEI-----------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS----------NSLCSWDAR 383 (430)
T ss_pred eeee-----------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc----------Cceeecccc
Confidence 6665 344332 22211 11234567777777777766442 457888877
Q ss_pred CCCCCC
Q 004149 358 TNGNFS 363 (771)
Q Consensus 358 ~~~~~~ 363 (771)
++..+.
T Consensus 384 tadr~~ 389 (430)
T KOG0640|consen 384 TADRVA 389 (430)
T ss_pred chhhhh
Confidence 655433
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.068 Score=52.25 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=70.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..++..+|||.-..++....- ++.-.+|++.+.|....-. .... +++.-...||.||.+++..+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka--~~~~------~~PvL~v~WsddgskVf~g~------- 91 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKA--QQSH------DGPVLDVCWSDDGSKVFSGG------- 91 (347)
T ss_pred cchheeEeccccCceEEeccc-CCceEEEEEecCCcccchh--hhcc------CCCeEEEEEccCCceEEeec-------
Confidence 347889999955555433333 3667788887544332211 1111 12236899999998766543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.+.++-+||+.++++.++ -..+..+....|-+-... +.|
T Consensus 92 -------------------------------------~Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~--~cl 130 (347)
T KOG0647|consen 92 -------------------------------------CDKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY--QCL 130 (347)
T ss_pred -------------------------------------cCCceEEEEccCCCeeee--eecccceeEEEEecCCCc--cee
Confidence 235788999999999998 566667888888776552 225
Q ss_pred EEEeecCc
Q 004149 259 VFVGWSSE 266 (771)
Q Consensus 259 ~~~~~~~~ 266 (771)
+..+|...
T Consensus 131 ~TGSWDKT 138 (347)
T KOG0647|consen 131 VTGSWDKT 138 (347)
T ss_pred Eecccccc
Confidence 66666443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=63.90 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=90.9
Q ss_pred ceEEEEEccCCceeec-cCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININSGEVQAV-KGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l-~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+||++|+.+=++..- ..+ +...+...++.++.+-. |+|-+. ...++|+++|+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y----lAyp~s-------------~t~GdV~l~d~~------- 161 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY----LAYPGS-------------TTSGDVVLFDTI------- 161 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCce----EEecCC-------------CCCceEEEEEcc-------
Confidence 4699999987654332 112 22223344444445556 888652 134588888872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
+-.....+..+.+.....+|||||..||..+... .-|.++.+..|+... +
T Consensus 162 ---------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----------TVIRVf~v~~G~kl~--e--------- 211 (391)
T KOG2110|consen 162 ---------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----------TVIRVFSVPEGQKLY--E--------- 211 (391)
T ss_pred ---------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc----------eEEEEEEcCCccEee--e---------
Confidence 2233445557788889999999999999988774 346677776655311 0
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
=..|.++.++.+++|++|+..|..+ +.....++|.++..
T Consensus 212 ------FRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 ------FRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEKV 250 (391)
T ss_pred ------eeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEeccc
Confidence 0123455567899999999966544 45677889988753
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.013 Score=63.03 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=103.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+..-+.||||++||+..-- ...+|.+...+ ..+++.+.....-. -.-..+.|+-|+.++++++.
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~---~~~iy~L~~~~-~vk~~~v~~~~~~~----~~a~~i~ftid~~k~~~~s~------ 448 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVS---RTKIYRLQPDP-NVKVINVDDVPLAL----LDASAISFTIDKNKLFLVSK------ 448 (691)
T ss_pred cceeeeccCCCCCEEEEeecc---ceEEEEeccCc-ceeEEEeccchhhh----ccceeeEEEecCceEEEEec------
Confidence 457778899999999996532 23477776322 23333321111000 00147889999999999862
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc---CCCCCCccceEEEecCCCCCc
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~---~~~~~~~~~~~~wspDg~~~~ 255 (771)
...+|..+++++...+.+. ..+....+..++-||||.+
T Consensus 449 -------------------------------------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y-- 489 (691)
T KOG2048|consen 449 -------------------------------------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNY-- 489 (691)
T ss_pred -------------------------------------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCE--
Confidence 1256777777766555442 1223346778899999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCC-CCEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPD-GKFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpD-G~~l~f 333 (771)
|+..+ ..+.|+++++ ++.+.+.|. .-...++...++|. -+.|+.
T Consensus 490 --iaa~~---------------t~g~I~v~nl-----------------~~~~~~~l~~rln~~vTa~~~~~~~~~~lvv 535 (691)
T KOG2048|consen 490 --IAAIS---------------TRGQIFVYNL-----------------ETLESHLLKVRLNIDVTAAAFSPFVRNRLVV 535 (691)
T ss_pred --EEEEe---------------ccceEEEEEc-----------------ccceeecchhccCcceeeeeccccccCcEEE
Confidence 99876 3348999998 777766665 33455777788854 445555
Q ss_pred EecCCCCCCCCccccccceeeecCCCC
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
... .+|++-+|++..+
T Consensus 536 ats-----------~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 536 ATS-----------NNQVFEFDIEARN 551 (691)
T ss_pred Eec-----------CCeEEEEecchhh
Confidence 443 3579999985444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.056 Score=64.22 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=49.2
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.||+-+ |+..... -+-+.-...++|-|.|.. |+.+....+ + ..|..+.-
T Consensus 236 ~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~l----IA~~q~~~~-~-----------~~VvFfEr--------- 288 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNL----IASSQRLPD-R-----------HDVVFFER--------- 288 (928)
T ss_pred eeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCE----EEEEEEcCC-C-----------cEEEEEec---------
Confidence 4678888866 5544442 122334567899999997 777663111 1 13333332
Q ss_pred hhhhcCCCCCCcce--ec--CCCCccccceeecCCCCEEEEEec
Q 004149 297 LELKESSSEDLPVV--NL--TESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 297 ~~~~~~~~~~~~~~--~l--t~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+|-+.. .| ......+....||+|+..||..-.
T Consensus 289 --------NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 289 --------NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred --------CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 221111 12 223445788999999999988663
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.067 Score=52.59 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=90.1
Q ss_pred cccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC--eEEEE
Q 004149 39 SIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVV 116 (771)
Q Consensus 39 ~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~ 116 (771)
.+..-..|+++ -|..=+...+.+-++.+..+-.|.++|+..... . +.+-...+.+....|+|+-. .|+-.
T Consensus 32 ~l~~lF~~~aH--~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-l-----g~ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 32 TLKPLFAFSAH--AGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-L-----GILLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred eeecccccccc--ccceeEEEecceeEeccCCCCcEEEEeccchhh-h-----cceeccccceEEEEecCCcchhheeee
Confidence 33333444443 344445555666677777778888888754321 1 11112236688888888776 56554
Q ss_pred ecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCC
Q 004149 117 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 196 (771)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (771)
++++ .+.+|+.+.-..+-.+. ...+.| ..++..|-||.-+.+.
T Consensus 104 sdDG-----~i~iw~~~~W~~~~slK-~H~~~V------t~lsiHPS~KLALsVg------------------------- 146 (362)
T KOG0294|consen 104 SDDG-----HIIIWRVGSWELLKSLK-AHKGQV------TDLSIHPSGKLALSVG------------------------- 146 (362)
T ss_pred cCCC-----cEEEEEcCCeEEeeeec-cccccc------ceeEecCCCceEEEEc-------------------------
Confidence 4443 56677555443222221 111223 6899999997444432
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 197 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
++..|..||+-.|+.-.+ .+-......+.|+|.|.+ .+.+.
T Consensus 147 -------------------~D~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 147 -------------------GDQVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred -------------------CCceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 236788899888776555 233334455899999998 76665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.048 Score=53.13 Aligned_cols=56 Identities=21% Similarity=0.451 Sum_probs=35.8
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-c-CC--cceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELW-S-QS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+.+.||+.||.+.+. .+++. . +. ....-.+++.+..- ....++||||+..|||+
T Consensus 2 ~~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~P------QWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPNP------QWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCCc------hheEEEECCCCcEEEEE
Confidence 35779999999998653 45555 2 21 22233344444321 22578999999999996
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.035 Score=56.14 Aligned_cols=216 Identities=10% Similarity=0.049 Sum_probs=117.3
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEE
Q 004149 36 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 115 (771)
Q Consensus 36 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~ 115 (771)
.|+--..+|=...-.-+.+.||+.+.... .+-+.++.+...|.-..+. ..+....+.+....|+|-...++
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~easg------Ggaf~ViPl~k~Gr~d~~~--P~v~GHt~~vLDi~w~PfnD~vI- 97 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEASG------GGAFLVIPLVKTGRMDASY--PLVCGHTAPVLDIDWCPFNDCVI- 97 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecCC------CcceeecccccccccCCCC--CCccCccccccccccCccCCcee-
Confidence 34433334433333346778888775432 2233444443332111111 11223446688999999777653
Q ss_pred EecCCCCCCeEEEEecCCcceEEE----ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004149 116 VRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
.+..++...-+|.+..++-.+.++ .+. +.... .+-+.|.|--.-++..+
T Consensus 98 ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rr------Vg~V~wHPtA~NVLlsa-------------------- 150 (472)
T KOG0303|consen 98 ASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRR------VGLVQWHPTAPNVLLSA-------------------- 150 (472)
T ss_pred ecCCCCceEEEEECCCcccccCcccceEEEe-eccee------EEEEeecccchhhHhhc--------------------
Confidence 233332334456555555333322 111 11111 25677888655554432
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...+.+.+||+.+|+...- +.....+.+..|+-||.. |+.+.
T Consensus 151 -----------------------g~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~----l~Ttc--------- 192 (472)
T KOG0303|consen 151 -----------------------GSDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSL----LCTTC--------- 192 (472)
T ss_pred -----------------------cCCceEEEEeccCCceeee--cCCCCeEEEEEeccCCce----eeeec---------
Confidence 2458999999999985444 345567889999999998 77765
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCc-cccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
++..|.++|. ..++...-- .+.+ ......|-.+|+ |+...-.. .+..
T Consensus 193 ------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr-------~seR 241 (472)
T KOG0303|consen 193 ------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSR-------MSER 241 (472)
T ss_pred ------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEeccCc-eeeecccc-------cccc
Confidence 3347888886 445433221 2233 355678888888 44333222 2345
Q ss_pred cceeeec
Q 004149 350 SLHRIDW 356 (771)
Q Consensus 350 ~l~~~d~ 356 (771)
++-+||-
T Consensus 242 q~aLwdp 248 (472)
T KOG0303|consen 242 QIALWDP 248 (472)
T ss_pred ceeccCc
Confidence 6666664
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0086 Score=61.24 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=45.0
Q ss_pred ccceeecCCCCEEEEEecC---CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004149 319 AFFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~---~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
....+..|||+ |+|.... ... ........||++|..++..+.+.... .....++
T Consensus 113 ~ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~--------------------~~~NGla 169 (307)
T COG3386 113 PNDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL--------------------TIPNGLA 169 (307)
T ss_pred CCceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE--------------------EecCceE
Confidence 34568889998 6777665 110 11112237999986433322221111 0235789
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 396 WLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 396 ~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
||||++++|++-+..+ .|++++.+
T Consensus 170 ~SpDg~tly~aDT~~~--~i~r~~~d 193 (307)
T COG3386 170 FSPDGKTLYVADTPAN--RIHRYDLD 193 (307)
T ss_pred ECCCCCEEEEEeCCCC--eEEEEecC
Confidence 9999998888765443 46666553
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=64.70 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH-HHHHHHHcCCCCCCe
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSK 617 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~r 617 (771)
.|+++|+++++ ...|..+++.+...++.|+.++++|.... ......++++.+ .++.+.+.. ...+
T Consensus 2 ~lf~~p~~gG~--~~~y~~la~~l~~~~~~v~~i~~~~~~~~----------~~~~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGGS--ASSYRPLARALPDDVIGVYGIEYPGRGDD----------EPPPDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTCS--GGGGHHHHHHHTTTEEEEEEECSTTSCTT----------SHEESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCccC--HHHHHHHHHhCCCCeEEEEEEecCCCCCC----------CCCCCCHHHHHHHHHHHhhhhC--CCCC
Confidence 58899997765 55788888888655699999999984310 111223444443 334444432 2348
Q ss_pred EEEEEcChhHHHHHHHHHhC---CCceeEEEecCC
Q 004149 618 VTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 649 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p 649 (771)
+.|+|||+||.+|..+|.+- ...+..++++.+
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 99999999999999988652 334666776663
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.05 Score=55.98 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=95.1
Q ss_pred ceEEEEEccC--CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..|.+||+.+ .++.... -.....+..++|+|=+.. |+.++. -+..|.++|+-
T Consensus 250 ~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~----ilAT~S--------------~D~tV~LwDlR------- 303 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEF----ILATGS--------------ADKTVALWDLR------- 303 (422)
T ss_pred CeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCc----eEEecc--------------CCCcEEEeech-------
Confidence 6899999885 3333331 122446778999998887 766651 23478888872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee--EEe
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD--VIP 373 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~ 373 (771)
+ -...+..+..+...+..+.|||.-..|.-.+..+ ..|.+||+..-+..+......+ ..-
T Consensus 304 n--------L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 304 N--------LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred h--------cccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcce
Confidence 1 1234556666777899999999998876666443 5688999865443332111100 000
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
++.. |-+...+..+.|.|+.-.++.+...++..+||.+.
T Consensus 366 lF~H-------gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LFIH-------GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEEe-------cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000 01223467889999999999999988888888753
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00018 Score=74.69 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=56.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++||.++.++ .+.|- +..+ +..+-....| .+.+++||||||+|+...++...
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~e---Llg~mkSYFG------GLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQE---LLGVMKSYFG------GLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-----eEEEeeccHHH---HHHHHHhhcc------ceEEEEEcCCccEEEecCCcceE
Confidence 4678899999999999998875 44443 2211 1111111111 22599999999999998877643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
. .|......-...-..+++|...+.|.+
T Consensus 357 t--VwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 T--VWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred E--EEEeccceEEEeccccccceeeEeecc
Confidence 2 233222222233445778887777764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.12 Score=55.26 Aligned_cols=211 Identities=14% Similarity=0.147 Sum_probs=124.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
......+++|.++ |+.... ...+..++ ..........+.... ..+.++|||++++......
T Consensus 76 p~~i~v~~~~~~v-yv~~~~--~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKV-YVTTGD--SNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeE-EEecCC--CCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 4567889999987 444432 33455565 222223333333333 4899999999886652210
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....+.++|..++++... .+........+++|||+. ++
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~----vy 175 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK----VY 175 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe----EE
Confidence 237889999988887665 343334478899999996 55
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-----cCCCCccccceeecCCCCEEEEE
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
... . ....|..+|. ++....+ .-..........++|||++++.
T Consensus 176 v~~-~-------------~~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV- 223 (381)
T COG3391 176 VTN-S-------------DDNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV- 223 (381)
T ss_pred EEe-c-------------CCCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEEE-
Confidence 443 1 2236888886 4444433 1112233567899999997644
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
.+.. .....+.++|..++........ ..+ . .......+|+|+.+++.... ...
T Consensus 224 ~~~~-------~~~~~v~~id~~~~~v~~~~~~---------~~~-~--------~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 224 ANDG-------SGSNNVLKIDTATGNVTATDLP---------VGS-G--------APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred Eecc-------CCCceEEEEeCCCceEEEeccc---------ccc-C--------CCCceeECCCCCEEEEEecC--CCe
Confidence 4432 1134688888776554221000 000 0 12355788999988776554 456
Q ss_pred EEEEECCCCcEEEecC
Q 004149 415 IISVNVSSGELLRITP 430 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~ 430 (771)
+..+|..+..+.....
T Consensus 277 V~vid~~~~~v~~~~~ 292 (381)
T COG3391 277 VSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEEeCCCCceeeeec
Confidence 7888887777665533
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0026 Score=72.43 Aligned_cols=286 Identities=17% Similarity=0.177 Sum_probs=144.9
Q ss_pred cceEEEeCCCCCeEEEEecC---------CCCCCeEEEEe-cCCc--ceEEEecCCcccccccCCCcccceeecCCCCe-
Q 004149 100 GASAVVPSPSGSKLLVVRNP---------ENESPIQFELW-SQSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETL- 166 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~---------~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~- 166 (771)
.....+|||++..+.-+... .+.+-.+|.++ .+.. .+.+ +.+-.+..|..+.|++-|..
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--------~s~~s~~rF~kL~W~~~g~~~ 79 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--------GSLQSSNRFNKLAWGSYGSHS 79 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc--------ccccccccceeeeecccCCCc
Confidence 34568999999522111110 01334567776 2222 1122 22223345679999998887
Q ss_pred ---EEEEecCCCCCCCCccCCC---CC---CCCCCccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccCC
Q 004149 167 ---IAYVAEEPSPSKPTFSLGS---TK---GGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGI 236 (771)
Q Consensus 167 ---la~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~~ 236 (771)
||=..+++... .|+... .. -......+........|++..+ ....+..+.+|++||+..-+ +.. +
T Consensus 80 ~GlIaGG~edG~I~--ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~--~ 154 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIV--LYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TPF--T 154 (1049)
T ss_pred cceeeccccCCceE--EecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC-CCC--C
Confidence 55433433221 222111 00 0112223333343466887777 45567778999999997632 222 1
Q ss_pred CC----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec
Q 004149 237 PK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 312 (771)
Q Consensus 237 ~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (771)
+. ...+..++|.-.-.. |...+. ......++|+. .......+
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqh----ILAS~s--------------~sg~~~iWDlr----------------~~~pii~l 200 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSH----ILASGS--------------PSGRAVIWDLR----------------KKKPIIKL 200 (1049)
T ss_pred CCCCCCcccceEeccchhhhH----HhhccC--------------CCCCceecccc----------------CCCccccc
Confidence 21 123445556544333 333221 11245555651 33445666
Q ss_pred CCCCc--cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCccceeeEEecccccCCCCCcccccC
Q 004149 313 TESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 313 t~~~~--~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
+...+ .+....|.||+.+-+.+..++. ....|-+||+.--.. .++.. .+..
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~assP~k~~~-------------------~H~~ 254 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASSPLKILE-------------------GHQR 254 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCCchhhhc-------------------cccc
Confidence 65544 4778999999976555555442 123466677543211 11110 1223
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEE
Q 004149 390 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVK 461 (771)
Q Consensus 390 ~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~ 461 (771)
++-.+.|++.+.++++++..++ +++.+|.+||++. .+...........|++..-.+ +..++....-.||
T Consensus 255 GilslsWc~~D~~lllSsgkD~--~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~-~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDN--RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSV-MAAASFDGKISIY 324 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCC--CeeEecCCCceEeeecCCCCcceeeeeecCCCcch-hhhheeccceeee
Confidence 5668899998877888775554 4666788888765 333322223344566543322 2333344444444
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.1 Score=56.72 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=72.3
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+..++-||+|+ |+.++.+... -....|++++.. .-.+...|..+.-.+.
T Consensus 527 Ev~~l~~s~~gn-----liASaCKS~~---------~ehAvI~lw~t~----------------~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 527 EVYALAISPTGN-----LIASACKSSL---------KEHAVIRLWNTA----------------NWLQVQELEGHSLTVT 576 (764)
T ss_pred eEEEEEecCCCC-----EEeehhhhCC---------ccceEEEEEecc----------------chhhhheecccceEEE
Confidence 455778888888 4444422221 123467777751 2233446777788899
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
...|||||++|+-.+.++ ...||.. ..+..-... + .+-..+.+-+-...|+||+
T Consensus 577 ~l~FSpdg~~LLsvsRDR---------t~sl~~~--~~~~~~e~~---------f------a~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDR---------TVSLYEV--QEDIKDEFR---------F------ACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred EEEECCCCcEEEEeecCc---------eEEeeee--ecccchhhh---------h------ccccccceEEEEcccCccc
Confidence 999999999999999876 2345433 111110000 0 0000011122356799999
Q ss_pred CEEEEEeeeCCeeEEEEEEC
Q 004149 401 CTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~ 420 (771)
++ +++++++....+|...-
T Consensus 631 ~~-FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 631 KY-FATASRDKKVKVWEEPD 649 (764)
T ss_pred ce-eEEecCCceEEEEeccC
Confidence 87 67777888888888753
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.054 Score=52.50 Aligned_cols=241 Identities=12% Similarity=0.167 Sum_probs=135.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEE-ecCCCC-----
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV-RNPENE----- 122 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~-~~~~~~----- 122 (771)
...|...|.|......|. ...++.+..++.+++.. ....|--..+.+...+-||-.++|+-. .++.++
T Consensus 20 qtad~d~icFlvgTnslK---~dNqVhll~~d~e~s~l---~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~ 93 (370)
T KOG1007|consen 20 QTADRDHICFLVGTNSLK---EDNQVHLLRLDSEGSEL---LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLT 93 (370)
T ss_pred cccCccceEEEEeccccC---CcceeEEEEecCccchh---hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCccee
Confidence 345777788877655543 33566666665555422 222233334778888889977666443 333222
Q ss_pred CCeEEEEe-cCCc-----ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC-CCCCc--
Q 004149 123 SPIQFELW-SQSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDK-- 193 (771)
Q Consensus 123 ~~~~~~~~-~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~-- 193 (771)
...+|.+. .-+. ...+..++...+|++ .++.|-|++.+|+...+.. ...|.....++ .....
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~---i~l~~l~ess~~vaev~ss 164 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNN---IVLWSLDESSKIVAEVLSS 164 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCc---eEEEEcccCcchheeeccc
Confidence 23466666 2222 122223444455555 7999999999999876432 12233222222 11000
Q ss_pred ---cCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcce
Q 004149 194 ---DCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 194 ---~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
..........|+| .-|.++.......|.-||+.+-+... +. -...-.+..+.|.|+-+. ++.+..
T Consensus 165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~----~lvt~g----- 234 (370)
T KOG1007|consen 165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQH----ILVTCG----- 234 (370)
T ss_pred ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceE----EEEEcC-----
Confidence 0111123455777 44666666777899999987654222 21 112224667788898766 665542
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+.|.++|.-. ....++.|.++..-+..++|.|--.+|+.....+
T Consensus 235 ---------DdgyvriWD~R~---------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 235 ---------DDGYVRIWDTRK---------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred ---------CCccEEEEeccC---------------CCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 223566666510 2334566777777789999999888888776543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.069 Score=50.27 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=116.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+....|.-||++.+.- ++...+.+| ..|...+....... ++....-|-|..+++--..++..
T Consensus 18 gaV~avryN~dGnY~ltc-----GsdrtvrLWNp~rg~liktYsghG~---------EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTC-----GSDRTVRLWNPLRGALIKTYSGHGH---------EVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cceEEEEEccCCCEEEEc-----CCCceEEeecccccceeeeecCCCc---------eeeeccccccccccccCCCCceE
Confidence 568889999999998764 334478888 34443333322111 11355667777776654333221
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~ 255 (771)
.+|+...++-..++..+....+.+.|.++-.-.+.+.-+..+.+||-.+..+.++.-+.. ...+.++..+ +..
T Consensus 84 --~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he-- 157 (307)
T KOG0316|consen 84 --QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE-- 157 (307)
T ss_pred --EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE--
Confidence 245555555566666676777777888887666777778899999987765444420111 1233333332 232
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f 333 (771)
|+-.+ -+..+..+|+ .-|. ++.+ ...+.+..||+||+-+.-
T Consensus 158 --IvaGS---------------~DGtvRtydi-----------------R~G~---l~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 158 --IVAGS---------------VDGTVRTYDI-----------------RKGT---LSSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred --EEeec---------------cCCcEEEEEe-----------------ecce---eehhhcCCcceeEEecCCCCEEEE
Confidence 55443 2235566665 2222 2222 234788999999997766
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCC
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
.+.+ ..|.++|-.+|+..+.
T Consensus 201 ~~l~-----------stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 201 SSLD-----------STLRLLDKETGKLLKS 220 (307)
T ss_pred eecc-----------ceeeecccchhHHHHH
Confidence 5554 3588888888776443
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0021 Score=64.41 Aligned_cols=118 Identities=19% Similarity=0.343 Sum_probs=80.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC---C------cEEEEECCCCCCCCChhhhhc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~---G------~~V~~~d~rG~~~~g~~~~~~ 587 (771)
.|+.+|-+...|+..+..++.-.++++||.|++ ...|...+..|... | |.|++|..+| ||-+..
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 588898888887755444444568889999887 34566666666433 3 8899999999 554321
Q ss_pred CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEE
Q 004149 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA 645 (771)
Q Consensus 588 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 645 (771)
+.+.|- ....+...++-|.-+ +.-++.+|-|.-+|..++..++..+|+.+.+.-
T Consensus 205 -~sk~GF-n~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlH 258 (469)
T KOG2565|consen 205 -PSKTGF-NAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLH 258 (469)
T ss_pred -CccCCc-cHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhh
Confidence 222222 234444555544433 345789999999999999999999999876643
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0033 Score=61.93 Aligned_cols=112 Identities=9% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
....++||+||.... ........++.....|| .++.+.++..+.. ..+. ............+...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~--~d~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYF--YDRESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhh--hhhhhHHHHHHHHHHHHHHHHhc--
Confidence 456899999995432 11222333444444444 7899998864321 1110 01111112244555666666555
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhC----C-----CceeEEEecCCccc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQA----P-----DKFVAAAARNPLCN 652 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~p~~~ 652 (771)
....+|.|++||||+.+.+.++... . .+|..+++.+|-++
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 2468999999999999999876541 1 24566777777554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.048 Score=51.62 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=82.1
Q ss_pred ceEEEEEccCCc-eeeccCCCCCCccceEEEecC---CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 218 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL---NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspD---g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
-.|+.++-+++- ..++. .....++.++.|+|- |. ++-..--...+|+--.-|.| .-.||..+-
T Consensus 128 vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~g~-----~~~~~~~~~~krlvSgGcDn-~VkiW~~~~------ 194 (299)
T KOG1332|consen 128 VSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAPGS-----LVDQGPAAKVKRLVSGGCDN-LVKIWKFDS------ 194 (299)
T ss_pred EEEEEEcCCCCccchhhh-hccccccceeeecCcCCCcc-----ccccCcccccceeeccCCcc-ceeeeecCC------
Confidence 455555555332 22231 455678899999996 52 21111111123332223433 224555542
Q ss_pred hhhhhhhcCCCCC-CcceecCCCCccccceeecCCC----CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 294 ASELELKESSSED-LPVVNLTESISSAFFPRFSPDG----KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p~~SpDG----~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.. .....|..+..-++.++|.|.- .+||-.+++. ..-||..+.+.+..+. +
T Consensus 195 -----------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg---------~viIwt~~~e~e~wk~-t--- 250 (299)
T KOG1332|consen 195 -----------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG---------TVIIWTKDEEYEPWKK-T--- 250 (299)
T ss_pred -----------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC---------cEEEEEecCccCcccc-c---
Confidence 11 1234477777778888998864 4566666553 2234444422221111 0
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+ -..|| .-+.+++||.-|..|. .+..++...||.=++ .|+.+++..
T Consensus 251 --l--------l~~f~----~~~w~vSWS~sGn~La-Vs~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 251 --L--------LEEFP----DVVWRVSWSLSGNILA-VSGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred --c--------cccCC----cceEEEEEeccccEEE-EecCCcEEEEEEeCC-CCcEEEccc
Confidence 0 01233 1245778999998554 445566778888776 567776643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.054 Score=50.34 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCccCceEEEEEccCCceeec-cCCCC-----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004149 213 AGKRQPSLFVININSGEVQAV-KGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l-~~~~~-----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
.+.....|..||+.-...... ...-. ...+..++-.|.|+- |+ .+- ..+.-.++|
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl----l~-sg~--------------~dssc~lyd 259 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL----LA-SGH--------------ADSSCMLYD 259 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce----ee-ecc--------------CCCceEEEE
Confidence 344567888999875544333 11111 124567788898884 44 331 222344556
Q ss_pred cccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004149 287 VSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
+ .++. .++...+...++.++|||-.-++...+.+ ..|.+-|+++.-..++.
T Consensus 260 i-----------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd-----------~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 260 I-----------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQGDLAHELP 311 (350)
T ss_pred e-----------------eCCceeeeeCCCccceeEEEeCCCceEEEEeccc-----------ceEEEeecccchhhcCc
Confidence 5 4454 56677777789999999998888777655 35888888775544432
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
.-. +...++. .-...|.|..- -+++++.+....||.++
T Consensus 312 ~~v------v~ehkdk---------~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMV------VAEHKDK---------AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred eEE------EEeccCc---------eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 111 1111111 22456877753 34455556666788764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.014 Score=55.36 Aligned_cols=174 Identities=13% Similarity=0.195 Sum_probs=106.8
Q ss_pred cCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 216 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
+...|++++++ .+.++...-.....+..+++||+.-.. +++++- .++.|-++|+.-
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~--------------GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAAS--------------GDGSLRLFDLTM----- 92 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEe--------------cCceEEEeccCC-----
Confidence 56899999996 333433311233446788999999888 888762 333566666521
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+.+..+.++...+.+..|++--++++.++.-+ ..|.+|+..-.+..+.
T Consensus 93 ----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD----------~TiKLW~~~r~~Sv~T---------- 142 (311)
T KOG0277|consen 93 ----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD----------GTIKLWDPNRPNSVQT---------- 142 (311)
T ss_pred ----------CCcchhHHHhhhhheEEeccccccceeEEeeccC----------CceEeecCCCCcceEe----------
Confidence 3445566667778899999999877776666332 2355555333222111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
|.| ...-+.+..|||-..-++.+.+.++..+||-++.. |+..-|......+-...|+.-...++++..
T Consensus 143 --------f~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 143 --------FNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred --------ecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecC
Confidence 221 11124577899877778888888888999988875 555546554433333445555555655543
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.052 Score=51.82 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=65.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCC--cEEEEECCCCCCCCChhhhhcCCCC-cc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVG--YSLLIVNYRGSLGFGEEALQSLPGK-VG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G--~~V~~~d~rG~~~~g~~~~~~~~~~-~~ 593 (771)
|.+.+-..+.|--.......+.|+++.|.|+.. ..|...+..|. ..+ +.|..+..-|......+-++..... ..
T Consensus 10 gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CCcccceeeeeeeccCCCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 344444444443223456789999999988753 24444555442 222 3355555444322221111111111 00
Q ss_pred ccch-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCC
Q 004149 594 SQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 594 ~~~~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p 649 (771)
.... +.+..-++++.+.- ....++.++|||-|+++.+.+.-.... .+..+++.-|
T Consensus 88 ifsL~~QV~HKlaFik~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred ccchhhHHHHHHHHHHHhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 1112 23334455555542 345789999999999999998863222 2344444444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.25 Score=58.82 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=61.1
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.....+|=.||+++|..+-... .| ....|.+|+=+ |.....++ ..+| -...++|.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~--~~---~~R~iRVy~Re-G~L~stSE---------------~v~g----Le~~l~Wr 265 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPE--TG---SRRVIRVYSRE-GELQSTSE---------------PVDG----LEGALSWR 265 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcC--CC---ceeEEEEECCC-ceEEeccc---------------cCCC----ccCCccCC
Confidence 3456789999999988876431 01 13556677633 33211111 1111 13578999
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEec----CCCCCceeeEEeecCCEEEEEEe
Q 004149 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----PAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~----~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
|.|..|+-+....+...+..+..++-+-...+ .....+....|+.|+..|+....
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 99996655554445555655655432222222 12224456688888887777653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.023 Score=61.51 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=77.3
Q ss_pred cccCCC-cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004149 148 SVYADG-WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 148 ~~~~~~-~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
++|+.+ .+.+++.||+|+.||....... +....|++|+..
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~---------------------------------------~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSL---------------------------------------KEHAVIRLWNTA 560 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCC---------------------------------------ccceEEEEEecc
Confidence 346655 5668899999998877644321 134789999977
Q ss_pred CCc-eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004149 227 SGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 227 ~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
+-. ...| ......+.+..|||||+. |+-++. +|.-.||...-+ ...
T Consensus 561 ~W~~~~~L--~~HsLTVT~l~FSpdg~~----LLsvsR-------------DRt~sl~~~~~~--------------~~~ 607 (764)
T KOG1063|consen 561 NWLQVQEL--EGHSLTVTRLAFSPDGRY----LLSVSR-------------DRTVSLYEVQED--------------IKD 607 (764)
T ss_pred chhhhhee--cccceEEEEEEECCCCcE----EEEeec-------------CceEEeeeeecc--------------cch
Confidence 643 3445 456678999999999999 988872 233345544210 000
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.-....+..+..-+....|+||+++++..|++.
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 011122445556688999999999977777664
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0047 Score=59.49 Aligned_cols=193 Identities=15% Similarity=0.126 Sum_probs=103.4
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhH
Q 004149 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 600 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~ 600 (771)
.|+..|+ ++. .||.+-||.+....+ .|....+.|+++||+|++.-|.-.-.|.. ......+.+
T Consensus 8 ~wvl~P~-----~P~-gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~---------~A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPK-GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQA---------IAREVWERF 72 (250)
T ss_pred cEEEeCC-----CCC-EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHH---------HHHHHHHHH
Confidence 4666665 233 455555665543333 67788999999999999999875322211 111123455
Q ss_pred HHHHHHHHHcCCCCC--CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCc
Q 004149 601 LTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 678 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (771)
..+++.+.+....+. -+++-+|||+|+-+-+.+...++..-++-++++= -+.. ....++. .+.+.... .
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSF-NN~~---a~~aIP~---~~~l~~~l--~ 143 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISF-NNFP---ADEAIPL---LEQLAPAL--R 143 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEec-CChH---HHhhCch---Hhhhcccc--c
Confidence 566666666543333 2678899999999998887765433333333221 0100 0001111 11111110 1
Q ss_pred CCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCccC
Q 004149 679 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGI 749 (771)
Q Consensus 679 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~ 749 (771)
..-.|.++....+.+.+- .....|+|-=.+|.+ +++..+.+.|+.+.. .++....+| .|-.
T Consensus 144 ~EF~PsP~ET~~li~~~Y------~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HLT 205 (250)
T PF07082_consen 144 LEFTPSPEETRRLIRESY------QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHLT 205 (250)
T ss_pred cCccCCHHHHHHHHHHhc------CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCCC
Confidence 112233333333322211 123467777777765 578888888887633 356667764 7843
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.11 Score=49.29 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=36.4
Q ss_pred CCCCccccCC---CEEEEEeeeCCeeEEEEEECCCCcEE--EecCCCCCceeeEEeecCCEEEEEE
Q 004149 391 ILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSSGELL--RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 391 ~~~~~~s~dg---~~l~~~~~~~~~~~l~~~d~~tg~~~--~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
+..++|.|.- +.-+.+.+++++.-||..+.+.++.+ .|..-........||..|+.|....
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 5677888754 34456667788888998885444322 2222122234467888888665544
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.008 Score=65.69 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc---------ch--------HHHHHHHHCCcEEEEECCCCCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---------YS--------KSLAFLSSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~---------~~--------~~~~~la~~G~~V~~~d~rG~~~ 579 (771)
.+..+..|++.... ..+..|+||++.|||+++.... .. ....-+ .+-..++.+|.+-..|
T Consensus 22 ~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW-~~~an~l~iD~PvGtG 98 (415)
T PF00450_consen 22 ENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSW-NKFANLLFIDQPVGTG 98 (415)
T ss_dssp TTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-G-GGTSEEEEE--STTST
T ss_pred CCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccc-ccccceEEEeecCceE
Confidence 45678888887654 4567899999999998753110 00 000011 1237889999775555
Q ss_pred CChhhhhcCCCCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHHh----C------CCceeEEEecC
Q 004149 580 FGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 648 (771)
Q Consensus 580 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~a~v~~~ 648 (771)
+.................+|+..+++.... .+.....++.|+|.|+||..+-.+|.. . .-.++++++.+
T Consensus 99 fS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGn 178 (415)
T PF00450_consen 99 FSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGN 178 (415)
T ss_dssp T-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEES
T ss_pred EeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecC
Confidence 644322111111112335666666664443 444566799999999999988776642 2 23489999999
Q ss_pred Cccch
Q 004149 649 PLCNL 653 (771)
Q Consensus 649 p~~~~ 653 (771)
|+++.
T Consensus 179 g~~dp 183 (415)
T PF00450_consen 179 GWIDP 183 (415)
T ss_dssp E-SBH
T ss_pred ccccc
Confidence 98875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0076 Score=66.38 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=59.7
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
..|.++|. .+... +.+-.+...+....|||||++|+..+.+. .|.+||+.+
T Consensus 556 f~I~vvD~-----------------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----------tIr~wDlpt 607 (910)
T KOG1539|consen 556 FSIRVVDV-----------------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----------TIRTWDLPT 607 (910)
T ss_pred eeEEEEEc-----------------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----------cEEEEeccC
Confidence 47889997 55554 44455677789999999999999999874 499999998
Q ss_pred CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
+... +.+... .-..++.+||+|..|+-+.... ..||.+
T Consensus 608 ~~lI----------D~~~vd----------~~~~sls~SPngD~LAT~Hvd~--~gIylW 645 (910)
T KOG1539|consen 608 GTLI----------DGLLVD----------SPCTSLSFSPNGDFLATVHVDQ--NGIYLW 645 (910)
T ss_pred ccee----------eeEecC----------CcceeeEECCCCCEEEEEEecC--ceEEEE
Confidence 7752 111000 0124678999999776554433 334444
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.63 Score=51.27 Aligned_cols=262 Identities=11% Similarity=0.101 Sum_probs=133.1
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe-EE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI-QF 127 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~-~~ 127 (771)
+|+|.+.+||+.+... .....+...++.++.--+..++ +.....+|.+||+.+.|++..+...++ +|
T Consensus 136 ~s~D~~~la~s~D~~G----~e~y~lr~kdL~tg~~~~d~i~--------~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~ 203 (682)
T COG1770 136 ISPDHNLLAYSVDVLG----DEQYTLRFKDLATGEELPDEIT--------NTSGSFAWAADGKTLFYTRLDENHRPDKVW 203 (682)
T ss_pred eCCCCceEEEEEeccc----ccEEEEEEEecccccccchhhc--------ccccceEEecCCCeEEEEEEcCCCCcceEE
Confidence 5789999999987543 3456677777754432222221 125578999999999999887654433 33
Q ss_pred EEecCC--cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 128 ELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
.-.-++ ...+++....+. ..+-.+.=|-.+++|+......
T Consensus 204 ~h~~gt~~~~d~lvyeE~d~-------~f~~~v~~s~s~~yi~i~~~~~------------------------------- 245 (682)
T COG1770 204 RHRLGTPGSSDELVYEEKDD-------RFFLSVGRSRSEAYIVISLGSH------------------------------- 245 (682)
T ss_pred EEecCCCCCcceEEEEcCCC-------cEEEEeeeccCCceEEEEcCCC-------------------------------
Confidence 222222 222322221111 1223444555666665543221
Q ss_pred CCcCcccCCccCceEEEEEccC--CceeeccCCCCCCccceEEEecC--CCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 206 EDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspD--g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
....+++++.+. ++++.+ .+... ...++.| |.. .++.+|..+ .+..
T Consensus 246 ----------~tsE~~ll~a~~p~~~p~vv--~pr~~---g~eY~~eh~~d~----f~i~sN~~g-----------knf~ 295 (682)
T COG1770 246 ----------ITSEVRLLDADDPEAEPKVV--LPREN---GVEYSVEHGGDR----FYILSNADG-----------KNFK 295 (682)
T ss_pred ----------cceeEEEEecCCCCCceEEE--EEcCC---CcEEeeeecCcE----EEEEecCCC-----------cceE
Confidence 235677777654 344555 22221 1122222 444 555554433 1224
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|+...+.. ....-+.+..+.....--.++-=+++|+..-++. +..+|++++.++++.
T Consensus 296 l~~ap~~~---------------~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~--------glp~v~v~~~~~~~~ 352 (682)
T COG1770 296 LVRAPVSA---------------DKSNWRELIPHREDVRLEGVDLFADHLVLLERQE--------GLPRVVVRDRKTGEE 352 (682)
T ss_pred EEEccCCC---------------ChhcCeeeeccCCCceeeeeeeeccEEEEEeccc--------CCceEEEEecCCCce
Confidence 55544300 1111222223322233334555567788777664 256788899887776
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCC-CCCccccCCCEEEEEeeeC-CeeEEEEEECCCCcEEEecCC
Q 004149 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSI-LSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~-~~~~~s~dg~~l~~~~~~~-~~~~l~~~d~~tg~~~~l~~~ 431 (771)
..+.-.. .. |...+ .+.-| +...|-+..+.. -..++|.+|+.+++.+.|...
T Consensus 353 ~~i~f~~------------~a----y~~~l~~~~e~--~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqq 406 (682)
T COG1770 353 RGIAFDD------------EA----YSAGLSGNPEF--DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQ 406 (682)
T ss_pred eeEEecc------------hh----hhccccCCCCC--CCccEEEEeecccccceeEEeeccCCcEEEEEec
Confidence 4432211 00 11111 12222 344455544433 344799999999998888543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.052 Score=54.62 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=90.3
Q ss_pred CcccCCccCceEEEEEccCCceeec--cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004149 209 GETYAGKRQPSLFVININSGEVQAV--KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l--~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
|.++++.....|++|...+|....- +-+....++..+.|||.-+. ++++.. -...|.++|
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS--------------~DgsIrIWD 286 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCS--------------CDGSIRIWD 286 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeee--------------cCceEEEEE
Confidence 3445555678889998888764332 11335568889999999887 766652 122566666
Q ss_pred cccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 287 VSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+ .++ .+.....+...+.-..|+-+-..||+...+ ..|.+||+..-+..+
T Consensus 287 i-----------------Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----------Gt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 287 I-----------------RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----------GTLSIWDLRQFKSGQ 338 (440)
T ss_pred e-----------------cCCCccceeEeeccCCceeeEEccCCcceeeecCCC-----------ceEEEEEhhhccCCC
Confidence 6 222 222223455567778999887766655543 247777875432211
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
. +. .+. .+..-+.++.|+|....++..+..+....||-+.+
T Consensus 339 p------VA-~fk---------~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 P------VA-TFK---------YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred c------ce-eEE---------eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 0 11 010 01123568899998888888777777777775544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0057 Score=69.79 Aligned_cols=251 Identities=12% Similarity=0.148 Sum_probs=135.7
Q ss_pred cceEEEeCCCCCe----EEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCC-eEEEEec
Q 004149 100 GASAVVPSPSGSK----LLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAE 172 (771)
Q Consensus 100 ~~~~~~~SPdG~~----la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~ 172 (771)
.-...+|++.|.. ||- ..++|.-.+|.... .+....++..-...+|.| .++.|+|... .||-.++
T Consensus 66 rF~kL~W~~~g~~~~GlIaG--G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V------~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAG--GLEDGNIVLYDPASIIANASEEVLATKSKHTGPV------LGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cceeeeecccCCCccceeec--cccCCceEEecchhhccCcchHHHhhhcccCCce------eeeeccccCCceeeccCC
Confidence 3456889999888 332 22223333333321 122222222223444555 7899999877 6666655
Q ss_pred CCCCCCCCccCCCCCCCCCCcc--CCCCCCcccccCCcCccc-CCccCceEEEEEccCCce-eeccCCCCCCccceEEEe
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKD--CNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~ws 248 (771)
+...- .|+............ ...-+.-+.|...--..+ .+.......+||+...+. ..+..+........++|.
T Consensus 138 ~geI~--iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 138 DGEIL--IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred CCcEE--EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 54332 343222111111100 011111222332221111 233455788999987643 333222233345688999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCC
Q 004149 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG 328 (771)
||+.. -+.++.+++ +..-|-.+|+-. .+...+.++.+...+.+..|++.+
T Consensus 216 P~~aT----ql~~As~dd-----------~~PviqlWDlR~---------------assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 216 PDHAT----QLLVASGDD-----------SAPVIQLWDLRF---------------ASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred CCCce----eeeeecCCC-----------CCceeEeecccc---------------cCCchhhhcccccceeeeccCCCC
Confidence 99976 444442222 222444555411 455667777888889999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
..++..+..+ .+++.|+.++++.. .-+....+. ...+.|.|-.-.++..++
T Consensus 266 ~~lllSsgkD----------~~ii~wN~~tgEvl----------~~~p~~~nW---------~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 266 PRLLLSSGKD----------NRIICWNPNTGEVL----------GELPAQGNW---------CFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred chhhhcccCC----------CCeeEecCCCceEe----------eecCCCCcc---------eeeeeecCCCcchhhhhe
Confidence 8787777654 57999998886641 111111111 235678887766777777
Q ss_pred eCCeeEEEEEE
Q 004149 409 WGSSQVIISVN 419 (771)
Q Consensus 409 ~~~~~~l~~~d 419 (771)
.++...||.+.
T Consensus 317 fdgkI~I~sl~ 327 (1049)
T KOG0307|consen 317 FDGKISIYSLQ 327 (1049)
T ss_pred eccceeeeeee
Confidence 88888888765
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.15 Score=51.34 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=62.4
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..+++++|+.+-+..... ..++..+..++|+|||.. |+..+..+ .-|.++.++
T Consensus 152 ~GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~l----lATASeKG--------------TVIRVf~v~-------- 204 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTL----LATASEKG--------------TVIRVFSVP-------- 204 (391)
T ss_pred CceEEEEEcccceeeeEE-EecCCceeEEEECCCCCE----EEEeccCc--------------eEEEEEEcC--------
Confidence 368999998765544331 234556778899999998 88776322 234445542
Q ss_pred hhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 297 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
++.....+..+ ...+.+.+||||++.|.-.++.+ +-+|+.++...
T Consensus 205 --------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te---------TVHiFKL~~~~ 251 (391)
T KOG2110|consen 205 --------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE---------TVHIFKLEKVS 251 (391)
T ss_pred --------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC---------eEEEEEecccc
Confidence 33333333322 33578999999999988887664 35566665433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.046 Score=60.12 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=28.3
Q ss_pred ceEEEEEccC-----CceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 218 PSLFVININS-----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 218 ~~l~v~d~~~-----~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
+.+-++|..+ .++... ++-..++..+..||||++ ++...
T Consensus 296 n~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSPDGky----lyVan 339 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSPDGKY----FIANG 339 (635)
T ss_pred CEEEEEECCccccCCcceEEE--EECCCCccceEECCCCCE----EEEeC
Confidence 4677888877 345554 556667888999999997 66654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.13 Score=62.52 Aligned_cols=91 Identities=9% Similarity=-0.008 Sum_probs=49.2
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc-ccCCCCCcccccCCCCCCcccc
Q 004149 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ-CAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
...+|+|++..|+..... ..+|+++|..++....+..... ...... ......| ..+..++++|
T Consensus 686 ~gVa~dp~~g~LyVad~~----------~~~I~v~d~~~g~v~~~~G~G~-~~~~~g~~~~~~~~-----~~P~GIavsp 749 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG----------QHQIWEYNISDGVTRVFSGDGY-ERNLNGSSGTSTSF-----AQPSGISLSP 749 (1057)
T ss_pred eEEEEecCCCeEEEEECC----------CCeEEEEECCCCeEEEEecCCc-cccCCCCccccccc-----cCccEEEEeC
Confidence 457899977766555432 3568999876654321111000 000000 0000011 1345688999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
||+.||++... ...|..+|++++..+.+
T Consensus 750 dG~~LYVADs~--n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 750 DLKELYIADSE--SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCCEEEEEECC--CCeEEEEECCCCcEEEE
Confidence 99988776543 34688888887775543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.058 Score=56.06 Aligned_cols=186 Identities=12% Similarity=0.119 Sum_probs=114.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....|+|++.+++....++ . +..+|+ .+... .+++.. ..+. ..+.+|+|-..+|++..
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd-~---v~k~~d~s~a~v-~~~l~~-htDY------VR~g~~~~~~~hivvtG------ 172 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDD-K---VVKYWDLSTAYV-QAELSG-HTDY------VRCGDISPANDHIVVTG------ 172 (487)
T ss_pred CceeEEEecccCCeEEEecCCC-c---eEEEEEcCCcEE-EEEecC-Ccce------eEeeccccCCCeEEEec------
Confidence 3467788999999886544332 3 455552 22222 333321 1122 37999999988888852
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
..+..|.+||........++ ......+..+.+-|.|..
T Consensus 173 -------------------------------------sYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~---- 210 (487)
T KOG0310|consen 173 -------------------------------------SYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSL---- 210 (487)
T ss_pred -------------------------------------CCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCE----
Confidence 23467888888765433332 456667888999999887
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ...+-+||+- .+++. .....+...+.+.++.-|++.|+-.+-
T Consensus 211 iasAg----------------Gn~vkVWDl~----------------~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 211 IASAG----------------GNSVKVWDLT----------------TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEEcC----------------CCeEEEEEec----------------CCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 66554 2267788871 34443 333446778999999999999987776
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
+. ++.++|..+-+ ++.-+ .|| ..+-+++.|||+..+++-.
T Consensus 259 D~-----------~VKVfd~t~~K----------vv~s~------~~~----~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 259 DR-----------HVKVFDTTNYK----------VVHSW------KYP----GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred cc-----------ceEEEEccceE----------EEEee------ecc----cceeeEEecCCCceEEEec
Confidence 64 35566633211 11111 222 2455778889988877543
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0063 Score=69.00 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=46.3
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEE-EecCCCCCCCCccccccceeeecCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVF-LSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f-~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+|.+.|. ++...+.+ +.....+.+|.|||||++|+| ++.+.- .+...||+.|+.+
T Consensus 330 ~L~~~D~-----------------dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~------~g~s~vYv~~L~t 386 (912)
T TIGR02171 330 NLAYIDY-----------------TKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGL------PGKSSVYVRNLNA 386 (912)
T ss_pred eEEEEec-----------------CCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCC------CCCceEEEEehhc
Confidence 7999998 67777777 777778999999999999999 655430 1356799999988
Q ss_pred CCCC
Q 004149 359 NGNF 362 (771)
Q Consensus 359 ~~~~ 362 (771)
.+..
T Consensus 387 ~~~~ 390 (912)
T TIGR02171 387 SGSG 390 (912)
T ss_pred cCCC
Confidence 6654
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.058 Score=53.17 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=22.6
Q ss_pred EEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 222 VININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 222 v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
++.-.++.+-.+. .....++.++.|.+||.+ |+..+
T Consensus 234 iy~~~~~~pl~ll-ggh~gGvThL~~~edGn~----lfsGa 269 (406)
T KOG2919|consen 234 IYNDDGRRPLQLL-GGHGGGVTHLQWCEDGNK----LFSGA 269 (406)
T ss_pred eEecCCCCceeee-cccCCCeeeEEeccCcCe----ecccc
Confidence 3333444554442 244557889999999997 65554
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0024 Score=66.50 Aligned_cols=130 Identities=22% Similarity=0.209 Sum_probs=80.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHH-HCCcEEEEECCCCCCCCChh---hhhcCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS-SVGYSLLIVNYRGSLGFGEE---ALQSLP 589 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la-~~G~~V~~~d~rG~~~~g~~---~~~~~~ 589 (771)
+.|.+-+. ++.|. . ...+.-++|+++||++-.......- -...|+ ....+|+.++||-. .+|-= .....+
T Consensus 117 SEDCLYlN--VW~P~-~-~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaP 191 (601)
T KOG4389|consen 117 SEDCLYLN--VWAPA-A-DPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAP 191 (601)
T ss_pred ChhceEEE--EeccC-C-CCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCC
Confidence 33444444 55563 1 2233449999999887655444322 233444 44578899999932 23321 112335
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCccc
Q 004149 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~ 652 (771)
++.| .-|..-|++|+.++ ..-|++||.|+|.|+|+.-+.+.+..- ..+|+.+|+.++..+
T Consensus 192 GNmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 192 GNMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred Cccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 5554 67888899999886 236899999999999998766544321 236778887777554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.029 Score=56.90 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=46.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 319 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~ 319 (771)
.+-..+|+||+.. +++.+ -...++.+|+ ..|. ...+.++...+
T Consensus 125 diydL~Ws~d~~~----l~s~s---------------~dns~~l~Dv-----------------~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGS---------------VDNSVRLWDV-----------------HAGQLLAILDDHEHYV 168 (434)
T ss_pred chhhhhccCCCce----eeeee---------------ccceEEEEEe-----------------ccceeEeecccccccc
Confidence 4567899999998 88876 2236777887 4454 45566677788
Q ss_pred cceeecCCCCEEEEEecCC
Q 004149 320 FFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~ 338 (771)
...+|.|-+++++-.+.+.
T Consensus 169 qgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceeecchhhhhhhhhccCc
Confidence 9999999999998877664
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.096 Score=52.35 Aligned_cols=229 Identities=10% Similarity=0.103 Sum_probs=133.8
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+.++..++.+-+||+.++.- .+| ++.....+..+++|+---++.-..+.+ ...-|+-.. .+++....+
T Consensus 166 f~tgs~DrtikIwDlatg~L---klt---ltGhi~~vr~vavS~rHpYlFs~gedk-----~VKCwDLe~-nkvIR~YhG 233 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQL---KLT---LTGHIETVRGVAVSKRHPYLFSAGEDK-----QVKCWDLEY-NKVIRHYHG 233 (460)
T ss_pred EEecCCCceeEEEEcccCeE---EEe---ecchhheeeeeeecccCceEEEecCCC-----eeEEEechh-hhhHHHhcc
Confidence 44555667777777855421 222 222345678889998777774332222 344442111 112211111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004149 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
....| .++...|--..|+..+.+...+ .|+.-..........+.....++.+.+--+..+++..+..|.+||
T Consensus 234 HlS~V------~~L~lhPTldvl~t~grDst~R--vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 234 HLSGV------YCLDLHPTLDVLVTGGRDSTIR--VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred cccee------EEEeccccceeEEecCCcceEE--EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 11111 4778888777777766655443 455433333344444445555566666556777888899999999
Q ss_pred ccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCC
Q 004149 225 INSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 303 (771)
Q Consensus 225 ~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 303 (771)
+..|+. ..+ +.....+...+..|+-.. |.+. ....|-.++++
T Consensus 306 l~agkt~~tl--t~hkksvral~lhP~e~~------fASa--------------s~dnik~w~~p--------------- 348 (460)
T KOG0285|consen 306 LRAGKTMITL--THHKKSVRALCLHPKENL------FASA--------------SPDNIKQWKLP--------------- 348 (460)
T ss_pred eccCceeEee--ecccceeeEEecCCchhh------hhcc--------------CCccceeccCC---------------
Confidence 987764 344 667778888888887654 3331 11146666663
Q ss_pred CCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 304 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 304 ~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
++.-+..|+.+...+.......||= ++...+ ...|+.|||.+|-..|
T Consensus 349 -~g~f~~nlsgh~~iintl~~nsD~v--~~~G~d----------ng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 349 -EGEFLQNLSGHNAIINTLSVNSDGV--LVSGGD----------NGSIMFWDWKSGHNYQ 395 (460)
T ss_pred -ccchhhccccccceeeeeeeccCce--EEEcCC----------ceEEEEEecCcCcccc
Confidence 4455666777777777777777773 333333 2469999999876544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.093 Score=50.95 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=85.3
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceec-CC----
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-TE---- 314 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l-t~---- 314 (771)
.+.-+.|.|++++ |+-+.. .+|..++++ ++.+ ...+ ..
T Consensus 125 ~i~cvew~Pns~k----lasm~d----------------n~i~l~~l~----------------ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 125 KINCVEWEPNSDK----LASMDD----------------NNIVLWSLD----------------ESSKIVAEVLSSESAE 168 (370)
T ss_pred ceeeEEEcCCCCe----eEEecc----------------CceEEEEcc----------------cCcchheeeccccccc
Confidence 4567799999999 887751 156677763 2222 1111 11
Q ss_pred CCccccceeecC--CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004149 315 SISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 315 ~~~~~~~p~~Sp--DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
......+-+||| ||..++.++.. .|+.||+.+.....-... .+...+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d~------------tl~~~D~RT~~~~~sI~d------------------AHgq~vr 218 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSDS------------TLQFWDLRTMKKNNSIED------------------AHGQRVR 218 (370)
T ss_pred ccceecccccCCCCccceEEEeCCC------------cEEEEEccchhhhcchhh------------------hhcceee
Confidence 122467789998 89988876643 488899876443111110 1112345
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 393 ~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.+.|.|+-..++++...++..+||-....+-.++.+....-.+-...|.+..++|+.+.
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 77889999999998888888888865443333444443322222234455555555443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.11 Score=53.63 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=88.3
Q ss_pred cccCCccCceEEEEEccCCce--eecc----CCCCCCccceEEEecCCCCCccEEE-EEeecCcceeeeeeeeccCCcee
Q 004149 210 ETYAGKRQPSLFVININSGEV--QAVK----GIPKSLSVGQVVWAPLNEGLHQYLV-FVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~--~~l~----~~~~~~~~~~~~wspDg~~~~~~l~-~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
.++.+.....|++||+..... ..+. -......+..++|+|-.+. |. +++ ..+.|
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv~---------------dd~~L 252 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSVG---------------DDGKL 252 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheeec---------------CCCeE
Confidence 344445668899999865432 1110 0223446778899997775 43 333 34578
Q ss_pred EEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 283 YAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.++|+-. .+.+. .....+.+.+...+|+|-+..|+-+... ...|.+||+..=..
T Consensus 253 ~iwD~R~---------------~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----------D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 253 MIWDTRS---------------NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----------DKTVALWDLRNLNK 307 (422)
T ss_pred EEEEcCC---------------CCCCCcccccccCCceeEEEeCCCCCceEEeccC----------CCcEEEeechhccc
Confidence 8888710 01222 2233445668899999977766544432 24588888765322
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
...+ |.+ +...+..+.|||+...++.++..++...+|-+..
T Consensus 308 ~lh~-----------------~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 308 PLHT-----------------FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred Ccee-----------------ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 1111 110 1113457889999999999988888878886654
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.03 Score=51.80 Aligned_cols=137 Identities=23% Similarity=0.276 Sum_probs=77.2
Q ss_pred hhhccccCc-ceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--------------Cc
Q 004149 490 VKSLLSSRQ-FSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--------------SS 554 (771)
Q Consensus 490 ~~~~l~~~~-~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--------------~~ 554 (771)
+-.+|+..- +....||+... . ..+.. +++..++. -..+..++|++||.+..... ..
T Consensus 62 VYeLLEk~c~Lkr~~ip~d~~----e---~E~~S-FiF~s~~~-lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GT 132 (297)
T KOG3967|consen 62 VYELLEKDCNLKRVSIPVDAT----E---SEPKS-FIFMSEDA-LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGT 132 (297)
T ss_pred HHHHHHhcCCceeEeecCCCC----C---CCCcc-eEEEChhH-hcCccceEEEEecCceEecchHhhhhhhccccccCC
Confidence 344455443 45555665431 1 11222 34444332 23445689999996543211 11
Q ss_pred chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHH
Q 004149 555 YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 634 (771)
Q Consensus 555 ~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a 634 (771)
..+.+....+.||-|++.+..-...+-....+ +...-...++.+.....+++.. ..++.|+++.||+||.+++-++
T Consensus 133 QiPyi~rAv~~Gygviv~N~N~~~kfye~k~n--p~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~ 208 (297)
T KOG3967|consen 133 QIPYIKRAVAEGYGVIVLNPNRERKFYEKKRN--PQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLV 208 (297)
T ss_pred cChHHHHHHHcCCcEEEeCCchhhhhhhcccC--cchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHH
Confidence 22345666788999999986532222111111 1112223455555555555543 4578899999999999999999
Q ss_pred HhCCC
Q 004149 635 GQAPD 639 (771)
Q Consensus 635 ~~~p~ 639 (771)
.++|+
T Consensus 209 ~~f~~ 213 (297)
T KOG3967|consen 209 ERFPD 213 (297)
T ss_pred HhcCC
Confidence 99875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.13 Score=55.61 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=52.8
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|||+.+..... ..+.++|.+ +|+....|.. ....+.-++||.||++.|-- +......+
T Consensus 21 kPDGsqL~lAAg----------~rlliyD~n-dG~llqtLKg-----HKDtVycVAys~dGkrFASG-----~aDK~VI~ 79 (1081)
T KOG1538|consen 21 KPDGTQLILAAG----------SRLLVYDTS-DGTLLQPLKG-----HKDTVYCVAYAKDGKRFASG-----SADKSVII 79 (1081)
T ss_pred CCCCceEEEecC----------CEEEEEeCC-Cccccccccc-----ccceEEEEEEccCCceeccC-----CCceeEEE
Confidence 468888877642 356777763 3333332222 22458889999999988753 33347788
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
|.....-.+-....+. +.+.+|.|-...|+.-
T Consensus 80 W~~klEG~LkYSH~D~---------IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 80 WTSKLEGILKYSHNDA---------IQCMSFNPITHQLASC 111 (1081)
T ss_pred ecccccceeeeccCCe---------eeEeecCchHHHhhhc
Confidence 8432111111111111 2688999998888764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.032 Score=59.99 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=37.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+...+|-|||.+|+...... +++.+ .+|..-+......+ ...+++||.||++.|..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-----lliyD~ndG~llqtLKgHKD---------tVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-----LLVYDTSDGTLLQPLKGHKD---------TVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecCCE-----EEEEeCCCcccccccccccc---------eEEEEEEccCCceeccCC
Confidence 367899999999998875443 66666 33332222211111 126999999999988754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.12 Score=57.78 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=136.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+-..+|.|.--+|+..--.+ ++.+|+- +.....+ +.| ||...++.|.|++-.++...++...
T Consensus 10 sRvKglsFHP~rPwILtslHsG-----~IQlWDYRM~tli~rF----deH-----dGpVRgv~FH~~qplFVSGGDDykI 75 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSG-----VIQLWDYRMGTLIDRF----DEH-----DGPVRGVDFHPTQPLFVSGGDDYKI 75 (1202)
T ss_pred ccccceecCCCCCEEEEeecCc-----eeeeehhhhhhHHhhh----hcc-----CCccceeeecCCCCeEEecCCccEE
Confidence 4566789999888886543322 6666632 2221111 112 3344899999999755444444333
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|+............+..|.....|-...--.++...+..|.+|+..+++...+. +.....+.-+.|.|....
T Consensus 76 --kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDl--- 149 (1202)
T KOG0292|consen 76 --KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDL--- 149 (1202)
T ss_pred --EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccce---
Confidence 35554433444444455555544444443334455567799999999998876653 556667888899997775
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC--------CC----cc-eecCCCCcccccee
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE--------DL----PV-VNLTESISSAFFPR 323 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~--------~~----~~-~~lt~~~~~~~~p~ 323 (771)
||-.+ -+..|.++|+++..++...+-.-++... -| -. ..|..+...+...+
T Consensus 150 -IVSaS---------------LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 150 -IVSAS---------------LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred -EEEec---------------ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 66554 3346788887544222211110000000 00 01 12233444566677
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l 403 (771)
|.|.=--|+-.+.+. .-.||+|+-.. . +++ +.-.|.| .++.++-|.|.-. |
T Consensus 214 fhpTlpliVSG~DDR---------qVKlWrmnetK-a--------WEv---------DtcrgH~-nnVssvlfhp~q~-l 264 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDR---------QVKLWRMNETK-A--------WEV---------DTCRGHY-NNVSSVLFHPHQD-L 264 (1202)
T ss_pred ecCCcceEEecCCcc---------eeeEEEecccc-c--------eee---------hhhhccc-CCcceEEecCccc-e
Confidence 777655444333322 34566665221 1 110 1111222 2456677888654 6
Q ss_pred EEEeeeCCeeEEEEEEC
Q 004149 404 LLSSIWGSSQVIISVNV 420 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~ 420 (771)
+++.+.+...++|-++-
T Consensus 265 IlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred eEecCCCccEEEEeccc
Confidence 67777677777775443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.13 Score=53.21 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEE
Q 004149 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 393 ~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~d~~~l~~~ 450 (771)
+++-.|... |+.+.++.+..+||.+.-.-..+..|..- .+.+....|+.+|+.+++.
T Consensus 385 sla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 385 SLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 344455554 88888899999999987543345544322 2334556778888866655
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0096 Score=60.24 Aligned_cols=113 Identities=11% Similarity=0.113 Sum_probs=68.3
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC--cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G--~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...-++||+||..... ...-.+.++-....| .+.+.+..+..+ .-+......+-..+...++...+++|.+...
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g---~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~ 189 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRG---SLLGYNYDRESTNYSRPALERLLRYLATDKP 189 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCC---eeeecccchhhhhhhHHHHHHHHHHHHhCCC
Confidence 3457999999954432 223334444444444 345556655311 1110011112222346778888889888753
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCccch
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNL 653 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~~~ 653 (771)
..+|.|+.||||.++++..+.+- +.+|+-+|+.+|=.|.
T Consensus 190 --~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 190 --VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred --CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 57899999999999999876541 3457888888886654
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.25 Score=48.86 Aligned_cols=200 Identities=14% Similarity=0.208 Sum_probs=95.2
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
++++|.||.++|+.+.+.+ ..|+.++.++.-.+.+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 7999999999998886543 67899998765555553
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-- 313 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-- 313 (771)
..+......+++.-+|. ++.+. .|...|+.++++... ..+ .....+.++
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~~~---~~~-------~~~~~~~~~l~ 111 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDDDT---TSL-------DRADVQKISLG 111 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE-------TT---------EEEEEEEE--
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEeccc---ccc-------chhhceEEecc
Confidence 33333456778876554 44443 244578888773200 000 001112221
Q ss_pred ---CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004149 314 ---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 314 ---~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
..+......+|+|.++.|+.+..+. ...||.++...+.. .+. +......... ......
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~---------P~~l~~~~~~~~~~-~~~-----~~~~~~~~~~----~~~~~d 172 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERK---------PKRLYEVNGFPGGF-DLF-----VSDDQDLDDD----KLFVRD 172 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESS---------SEEEEEEESTT-SS---E-----EEE-HHHH-H----T--SS-
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCC---------ChhhEEEccccCcc-cee-----eccccccccc----cceecc
Confidence 1233478899999999988776543 24566666422111 000 0000000000 011123
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCC---------CceeeEEeecCCEEEEEE
Q 004149 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAES---------NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~---------~~~~~~~s~d~~~l~~~~ 451 (771)
+..+.+.|....|++.+. ....|..+|. +|++. .+.-..+ .....+++++| .||.++
T Consensus 173 ~S~l~~~p~t~~lliLS~--es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvs 239 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSD--ESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVS 239 (248)
T ss_dssp --EEEEETTTTEEEEEET--TTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE
T ss_pred ccceEEcCCCCeEEEEEC--CCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEc
Confidence 456677787777777754 2345777785 45543 2322221 23345677665 455555
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.14 Score=49.79 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=98.9
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecC---CcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVP---QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.=+|||||++|.-..+.-+.+..++-+++ .....++-..+ -+.| .+.|.+||+.|+.+.. .-...
T Consensus 118 HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH----------ev~lm~DGrtlvvanG-GIeth 186 (366)
T COG3490 118 HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH----------EVTLMADGRTLVVANG-GIETH 186 (366)
T ss_pred ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc----------eeEEecCCcEEEEeCC-ceecc
Confidence 45799999988544444444555666663 22333333322 2333 7899999998877532 11110
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee-ccCCC---CCCccceEEEecCCCCC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIP---KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~---~~~~~~~~~wspDg~~~ 254 (771)
|.+.. -+.......+.|.++|..+|++.. .+ .| ...++..+..-+||+
T Consensus 187 pdfgR-------------------------~~lNldsMePSlvlld~atG~liekh~-Lp~~l~~lSiRHld~g~dgt-- 238 (366)
T COG3490 187 PDFGR-------------------------TELNLDSMEPSLVLLDAATGNLIEKHT-LPASLRQLSIRHLDIGRDGT-- 238 (366)
T ss_pred cccCc-------------------------cccchhhcCccEEEEeccccchhhhcc-CchhhhhcceeeeeeCCCCc--
Confidence 11100 122223356899999977776432 22 33 245788889999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC-------CccccceeecCC
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------ISSAFFPRFSPD 327 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------~~~~~~p~~SpD 327 (771)
|+|...-.+++ +...-|.-.-. .+...+.|.-. ...+.+.+.+-+
T Consensus 239 ---vwfgcQy~G~~--------~d~ppLvg~~~-----------------~g~~l~~~~~pee~~~~~anYigsiA~n~~ 290 (366)
T COG3490 239 ---VWFGCQYRGPR--------NDLPPLVGHFR-----------------KGEPLEFLDLPEEQTAAFANYIGSIAANRR 290 (366)
T ss_pred ---EEEEEEeeCCC--------ccCCcceeecc-----------------CCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence 77765333221 11112222221 22322222211 224566777766
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
...++..+.+ .+...+||.++|...
T Consensus 291 ~glV~lTSP~----------GN~~vi~da~tG~vv 315 (366)
T COG3490 291 DGLVALTSPR----------GNRAVIWDAATGAVV 315 (366)
T ss_pred CCeEEEecCC----------CCeEEEEEcCCCcEE
Confidence 6666666654 256888999988753
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.036 Score=60.80 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=76.0
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
|..+.+++.+..||+..... ++.+.+ ....+..++|||.-... |++..++| ++.+|+--++.+-...-..
T Consensus 149 liSGSQDg~vK~~DlR~~~S--~~t~~~----nSESiRDV~fsp~~~~~-F~s~~dsG---~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKS--KSTFRS----NSESIRDVKFSPGYGNK-FASIHDSG---YLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred EEecCCCceEEEEeeecccc--cccccc----cchhhhceeeccCCCce-EEEecCCc---eEEEeeccCchhHHHHhhc
Confidence 44556778888888865533 222212 23568889999955433 44433334 5555543333222111111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004149 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
..|.| .++.|+|++.+||..+ ++..+.+||
T Consensus 219 H~GpV------~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd 248 (839)
T KOG0269|consen 219 HNGPV------LCLNWHPNREWLATGG--------------------------------------------RDKMVKIWD 248 (839)
T ss_pred ccCce------EEEeecCCCceeeecC--------------------------------------------CCccEEEEe
Confidence 12222 6899999999999854 335788999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..+++...+.-+..-..++.+.|-|+-..
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccc
Confidence 88776544421333446788999999876
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.39 Score=49.82 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=100.4
Q ss_pred ccceEEEeCCCCC-eEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCC-CeEEEEecCCC
Q 004149 99 TGASAVVPSPSGS-KLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE-TLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg-~~la~~~~~~~ 175 (771)
+.+...+|.|.-. .++.+ ....|.-.+|.+.. ......+.-. ....+ .++++.|+|-. .+|+..+.+++
T Consensus 187 ~Rit~l~fHPt~~~~lva~-GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~------~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAV-GDKGGQVGLWNFGTQEKDKDGVYLF-TPHSG------PVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceEEEEecccCcceEEEE-ccCCCcEEEEecCCCCCccCceEEe-ccCCc------cccceEecCCChhheeeeccCce
Confidence 4578889999877 44433 33334444554431 1111111111 11111 23789999954 44555555655
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCC
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.+...+............+...|.....+..+-+..+.+.....+-+||+.++. ...+ .-.+-.+.++++.|--.+
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--RLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--hhhhcccceeecCCCCch
Confidence 443222211111111111122222222333332333333344455667765443 3344 233347889999998887
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceecCCCCccccceeecCCCCEE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
+..++- .+....++|+-. + .+.. ..-...+...+.+..|||+|-.|
T Consensus 337 ----~laT~s--------------~D~T~kIWD~R~-------l-------~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 337 ----FLATAS--------------LDQTAKIWDLRQ-------L-------RGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ----heeecc--------------cCcceeeeehhh-------h-------cCCCCcceecccccceeeeeEEcCCCCce
Confidence 444331 111333444410 0 1111 22334566679999999999988
Q ss_pred EEEecCCCCCCCCccccccceeeec
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+....+. .|.++|.
T Consensus 385 ~TT~~D~-----------~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQDN-----------EIRVFDS 398 (498)
T ss_pred EeeccCC-----------ceEEeec
Confidence 8777664 4777775
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.023 Score=72.10 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.++++||.++. ...|......| ..++.|+.++.+|.+. . ......++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~~~---~-------~~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRPDG---P-------MQTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCCCC---C-------CCCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668999997665 34666677666 4569999999998432 1 011123444444333322221 1135
Q ss_pred eEEEEEcChhHHHHHHHHHh---CCCceeEEEecCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNP 649 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~p 649 (771)
++.++|||+||.++..++.+ .++.+..+++..+
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 79999999999999999885 4677777776655
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.043 Score=56.71 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=115.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+...+-+|+|.+|+- .... ++-.+|.+. .|....+.. ....+ .++.||-||++|+..+.+....
T Consensus 82 g~v~al~s~n~G~~l~a-g~i~-g~lYlWels-sG~LL~v~~aHYQ~I----------TcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLA-GTIS-GNLYLWELS-SGILLNVLSAHYQSI----------TCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred cceeeeecCCCceEEEe-eccc-CcEEEEEec-cccHHHHHHhhccce----------eEEEEeCCCcEEEecCCCccEE
Confidence 55778888999998853 2222 333444443 343322221 12223 5889999999888777665432
Q ss_pred CCCccCC----CC-----CCCCCCccCCCCCCcc--cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEE
Q 004149 178 KPTFSLG----ST-----KGGSSDKDCNSWKGQG--DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 246 (771)
Q Consensus 178 ~~~~~~~----~~-----~~~~~~~~~~~~~~~~--~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ 246 (771)
.|... .. +....+.++.-...++ .+.+--...++...+..+.+||+..|.+..- ..-+..+..++
T Consensus 149 --vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~ 224 (476)
T KOG0646|consen 149 --VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVA 224 (476)
T ss_pred --EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEE
Confidence 22210 01 1111122221111111 1111113444555678899999999975433 34455677888
Q ss_pred EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC-CCCCCcceecCCCCc--ccccee
Q 004149 247 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES-SSEDLPVVNLTESIS--SAFFPR 323 (771)
Q Consensus 247 wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~lt~~~~--~~~~p~ 323 (771)
..|-++ .+|++.+ .+.||..++-.-+.++...+ .+. ...+.+...+..+.+ .+...+
T Consensus 225 lDpae~-----~~yiGt~--------------~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 225 LDPAER-----VVYIGTE--------------EGKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred Eccccc-----EEEecCC--------------cceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEE
Confidence 999776 6666633 33566666532221111111 111 112223344555555 688899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.|-||+.|+-.+.+ .++.+||..+.+.
T Consensus 285 is~DgtlLlSGd~d-----------g~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 285 ISTDGTLLLSGDED-----------GKVCVWDIYSKQC 311 (476)
T ss_pred EecCccEEEeeCCC-----------CCEEEEecchHHH
Confidence 99999988755544 3588888877554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.12 Score=55.32 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=79.6
Q ss_pred cccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-e
Q 004149 154 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-Q 231 (771)
Q Consensus 154 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~ 231 (771)
.+..+.|.-+|.+|+.+.-....+.-....... .....+.....-.....|-|---. +....+..+.++|+..+++ +
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~-lfVaTq~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY-LFVATQRSVRIYDLSKQELVK 601 (733)
T ss_pred ccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce-EEEEeccceEEEehhHHHHHH
Confidence 346889999999999987665544322221111 111111111111112223333211 1122356788888877654 3
Q ss_pred eccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee
Q 004149 232 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN 311 (771)
Q Consensus 232 ~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (771)
.+ .++...+..++.+|.|.. |+..+. ...+..+|++- .+...++
T Consensus 602 kL--~tg~kwiS~msihp~GDn----li~gs~---------------d~k~~WfDldl---------------sskPyk~ 645 (733)
T KOG0650|consen 602 KL--LTGSKWISSMSIHPNGDN----LILGSY---------------DKKMCWFDLDL---------------SSKPYKT 645 (733)
T ss_pred HH--hcCCeeeeeeeecCCCCe----EEEecC---------------CCeeEEEEccc---------------CcchhHH
Confidence 44 555667888999999998 888763 23566666632 3444455
Q ss_pred cCCCCccccce----------eecCCCCEEEEEec
Q 004149 312 LTESISSAFFP----------RFSPDGKFLVFLSA 336 (771)
Q Consensus 312 lt~~~~~~~~p----------~~SpDG~~l~f~~~ 336 (771)
|..+...++++ +-|+||..++|-.+
T Consensus 646 lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 646 LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred hhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 54444433333 34677777777554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.63 Score=45.77 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=112.6
Q ss_pred EEEEEeechhh-cccceeEEEEEEeecCCC-CccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC
Q 004149 56 AMFSISQPNLL-ANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS 133 (771)
Q Consensus 56 v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~ 133 (771)
|+|+..+.++. .++-++.++.|.+...+. .++-....+ +.+....||-||.++ |+..-+ +.-.+|.+- .+
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~-----~PvL~v~WsddgskV-f~g~~D-k~~k~wDL~-S~ 104 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD-----GPVLDVCWSDDGSKV-FSGGCD-KQAKLWDLA-SG 104 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccC-----CCeEEEEEccCCceE-EeeccC-CceEEEEcc-CC
Confidence 44444333322 334445666666755421 111111111 458899999999777 554433 333344333 33
Q ss_pred cceEEEecCCcccccccCCCcccceeecCCCC--eEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc--C
Q 004149 134 QLEKEFHVPQTVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW--G 209 (771)
Q Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--g 209 (771)
+..++-.....+ ....|=+... -|+..+-+++.+ +|+........... ..+-+|..|- .
T Consensus 105 Q~~~v~~Hd~pv----------kt~~wv~~~~~~cl~TGSWDKTlK--fWD~R~~~pv~t~~-----LPeRvYa~Dv~~p 167 (347)
T KOG0647|consen 105 QVSQVAAHDAPV----------KTCHWVPGMNYQCLVTGSWDKTLK--FWDTRSSNPVATLQ-----LPERVYAADVLYP 167 (347)
T ss_pred Ceeeeeecccce----------eEEEEecCCCcceeEeccccccee--ecccCCCCeeeeee-----ccceeeehhccCc
Confidence 444443333333 4666666554 566666666544 45422111111000 0011122221 1
Q ss_pred cccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 210 ETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
-..+......|.+++|+++.. +++. .+-......++.-+|.+. .+..+-+ +...|..+|-
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~----~alGsiE-------------Grv~iq~id~ 229 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG----FALGSIE-------------GRVAIQYIDD 229 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc----eEeeeec-------------ceEEEEecCC
Confidence 122344567899999976532 3332 455667788888899887 6555422 2234555553
Q ss_pred ccccchhhhhhhhcCCCCCCcceec----CCCCccccceeecCCCCEEEEEecCC
Q 004149 288 SLYKSEASELELKESSSEDLPVVNL----TESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l----t~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+.+ .+.-+-++.+- ......+.+..|.|.-.+|+.+..+.
T Consensus 230 ~~~-----------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 230 PNP-----------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred CCc-----------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc
Confidence 100 00000112221 11234578899999888888777663
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.092 Score=51.80 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=67.3
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeecc
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVK 234 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~ 234 (771)
.+-+|++|++.||...+ ..++.++...+.. .+..-
T Consensus 14 tchAwn~drt~iAv~~~--------------------------------------------~~evhiy~~~~~~~w~~~h 49 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPN--------------------------------------------NHEVHIYSMLGADLWEPAH 49 (361)
T ss_pred eeeeecCCCceEEeccC--------------------------------------------CceEEEEEecCCCCceece
Confidence 68899999999998532 2345555544444 22221
Q ss_pred -CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ce
Q 004149 235 -GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VV 310 (771)
Q Consensus 235 -~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~ 310 (771)
-...+..+..+.|+|-+.+ |+-.+ .+|+..+|... .+++ .-
T Consensus 50 tls~Hd~~vtgvdWap~snr----Ivtcs-------------~drnayVw~~~------------------~~~~Wkptl 94 (361)
T KOG1523|consen 50 TLSEHDKIVTGVDWAPKSNR----IVTCS-------------HDRNAYVWTQP------------------SGGTWKPTL 94 (361)
T ss_pred ehhhhCcceeEEeecCCCCc----eeEcc-------------CCCCccccccC------------------CCCeeccce
Confidence 0334556778999999999 99876 23555666553 2222 23
Q ss_pred ecCCCCccccceeecCCCCEEEEEecC
Q 004149 311 NLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 311 ~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.|...++....+.|||.+.++|..+..
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCc
Confidence 344567788999999999999876643
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.021 Score=58.50 Aligned_cols=92 Identities=22% Similarity=0.239 Sum_probs=62.1
Q ss_pred HHHHHCCcEEEEECCCCCCC---CChhhhhc---CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHH
Q 004149 560 AFLSSVGYSLLIVNYRGSLG---FGEEALQS---LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 633 (771)
Q Consensus 560 ~~la~~G~~V~~~d~rG~~~---~g~~~~~~---~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 633 (771)
+...+.+..+|.+++|--|+ +|...... +..-..++..+|....+.+|++........|+++|.|+||++++++
T Consensus 105 D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWf 184 (492)
T KOG2183|consen 105 DLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWF 184 (492)
T ss_pred hhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHH
Confidence 34456788999999986221 22221110 0111123457888888999988755667889999999999999999
Q ss_pred HHhCCCceeEEEe-cCCcc
Q 004149 634 IGQAPDKFVAAAA-RNPLC 651 (771)
Q Consensus 634 a~~~p~~~~a~v~-~~p~~ 651 (771)
=.++|..+.++.+ .+|+.
T Consensus 185 RlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 185 RLKYPHIVLGALAASAPVL 203 (492)
T ss_pred HhcChhhhhhhhhccCceE
Confidence 9999987765544 44543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.21 Score=49.41 Aligned_cols=170 Identities=18% Similarity=0.264 Sum_probs=86.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...+..+|.||.++|+.+.+. ...++.+...|+..+.+.+.. .+ .+.++++.-+|+ ++.+.++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~---~~~i~els~~G~vlr~i~l~g--~~------D~EgI~y~g~~~-~vl~~Er----- 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE---PGEIYELSLDGKVLRRIPLDG--FG------DYEGITYLGNGR-YVLSEER----- 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT---TTEEEEEETT--EEEEEE-SS---S------SEEEEEE-STTE-EEEEETT-----
T ss_pred CCccccEEcCCCCeEEEEECC---CCEEEEEcCCCCEEEEEeCCC--CC------CceeEEEECCCE-EEEEEcC-----
Confidence 447889999999998777654 467888886666666666532 11 226888887775 3334332
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC--Cc-----eeecc-CCC--CCCccceEEEe
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GE-----VQAVK-GIP--KSLSVGQVVWA 248 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--~~-----~~~l~-~~~--~~~~~~~~~ws 248 (771)
...|+++++.. .. .+.+. +.+ .+.+...++|.
T Consensus 85 --------------------------------------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 85 --------------------------------------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp --------------------------------------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred --------------------------------------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 35677777632 21 12221 223 34567899999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCC
Q 004149 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG 328 (771)
|.+++ |+.+. +..| ..||.++.... ...+... ................+..+.|..
T Consensus 127 ~~~~~----L~v~k-E~~P------------~~l~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 127 PKTNR----LFVAK-ERKP------------KRLYEVNGFPG---GFDLFVS----DDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp TTTTE----EEEEE-ESSS------------EEEEEEESTT----SS--EEE----E-HHHH-HT--SS---EEEEETTT
T ss_pred CCCCE----EEEEe-CCCC------------hhhEEEccccC---ccceeec----cccccccccceeccccceEEcCCC
Confidence 99887 77653 3333 24565553000 0000000 000000000111235667888988
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecC
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
..|+.+|... ..|..+|.+
T Consensus 183 ~~lliLS~es----------~~l~~~d~~ 201 (248)
T PF06977_consen 183 GHLLILSDES----------RLLLELDRQ 201 (248)
T ss_dssp TEEEEEETTT----------TEEEEE-TT
T ss_pred CeEEEEECCC----------CeEEEECCC
Confidence 8888888764 457777743
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0087 Score=50.43 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=48.5
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..|+|++.++.|+..|.+.++.+.+.|.. .+++.+++.||+... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 58999999999999999999999999875 589999999999764 222355667777775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.02 Score=60.27 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=88.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCC-C-cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSL-S-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HG-g~~~~~~-~-~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~ 588 (771)
.+.+..+....=++|.+..+. ....|+.+++-| |+....+ . .-........+.|..|+..++|- ||.+..-..
T Consensus 62 hF~~~~~~~~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~ 137 (514)
T KOG2182|consen 62 HFDSSNGKFFQQRFYNNNQWA-KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGD 137 (514)
T ss_pred hhhcchhhhhhhheeeccccc-cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCC
Confidence 343444444444566665442 345688888877 3332111 1 11234556678899999999997 665432111
Q ss_pred C------CCccccchhhHHHHHHHHHHcCC-CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 589 P------GKVGSQDVNDVLTAIDHVIDMGL-ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 589 ~------~~~~~~~~~D~~~~i~~l~~~~~-~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
. .-...+.+.|+..+|+.+..+.. -+..+.+.+|.|+-|.+++++=.++|+++.++|+.++.+
T Consensus 138 ~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 138 LSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred CcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 1 11123457888888888877653 444599999999999999999999999998888776543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.14 Score=55.46 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=22.2
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.|..+|+ ++++. +++.-. .+..+.||+||+.+++.+..
T Consensus 127 ~i~~yDw-----------------~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDW-----------------ETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-T-----------------TT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEh-----------------hHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 4888888 55543 444322 26789999999999999755
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.31 Score=48.92 Aligned_cols=201 Identities=12% Similarity=0.115 Sum_probs=115.8
Q ss_pred ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 97 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 97 ~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
..+.+..+++-|-.++++..+.+ ....|| ..|+.... ++..+ +...++.+|+---+|+...+++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~Lklt--ltGhi-------~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLT--LTGHI-------ETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEe--ecchh-------heeeeeeecccCceEEEecCCC
Confidence 34567778888887777654333 255666 33433322 22111 1125888998888887776666
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..+ -|+..+.+-......+.+-..-...-|-....+++..+..+.+||+.+....... ......+.++.+-|-.-+
T Consensus 216 ~VK--CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpq- 291 (460)
T KOG0285|consen 216 QVK--CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQ- 291 (460)
T ss_pred eeE--EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCCCc-
Confidence 433 1222111111111111111111112222334556667889999999887544441 334556788888886666
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+ -++.|..+|+- .+.....||.+..+++.....|+-..+|-.
T Consensus 292 ---vit~S---------------~D~tvrlWDl~----------------agkt~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 292 ---VITGS---------------HDSTVRLWDLR----------------AGKTMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred ---eEEec---------------CCceEEEeeec----------------cCceeEeeecccceeeEEecCCchhhhhcc
Confidence 77665 33468888872 556678899999999999999987654433
Q ss_pred ecCCCCCCCCccccccceeeecCCCCC
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+.+ .|..+++.-|..
T Consensus 338 s~d------------nik~w~~p~g~f 352 (460)
T KOG0285|consen 338 SPD------------NIKQWKLPEGEF 352 (460)
T ss_pred CCc------------cceeccCCccch
Confidence 332 366666655543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.11 Score=54.02 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=83.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
+....|||.-+.++.+...+ + .+.+|+-........... .|. .+..+++|||-...|+..-.
T Consensus 167 vRll~ys~skr~lL~~asd~-G---~VtlwDv~g~sp~~~~~~-~Hs-----AP~~gicfspsne~l~vsVG-------- 228 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDK-G---AVTLWDVQGMSPIFHASE-AHS-----APCRGICFSPSNEALLVSVG-------- 228 (673)
T ss_pred EEEeecccccceeeEeeccC-C---eEEEEeccCCCcccchhh-hcc-----CCcCcceecCCccceEEEec--------
Confidence 56889999999988776544 3 667774322233332211 110 01258999997766654311
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
-+..|+++|....+...- +..+.....++|+++|.. |+.
T Consensus 229 -----------------------------------~Dkki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~----L~a 267 (673)
T KOG4378|consen 229 -----------------------------------YDKKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTY----LCA 267 (673)
T ss_pred -----------------------------------ccceEEEeecccccccce--eeecCCcceeeecCCceE----EEe
Confidence 235789999876543332 233445678999999986 665
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCC
Q 004149 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpD 327 (771)
.. ..++|+.+|+-. ....+..+..+...+...+|=|-
T Consensus 268 G~---------------s~G~~i~YD~R~---------------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 268 GN---------------SKGELIAYDMRS---------------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ec---------------CCceEEEEeccc---------------CCCCceEeeecccceeEEEeeec
Confidence 43 345899999831 22334556666666777777553
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.012 Score=62.35 Aligned_cols=91 Identities=22% Similarity=0.283 Sum_probs=65.4
Q ss_pred CCCcEEEEEcCCCCCCCCC-cchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLS-SYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~-~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...-+|+.+|||++..... ....+. ++..+.|+-|+.+||.-.++ .......+++.-|+-|++.+..
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~a 462 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCA 462 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHH
Confidence 3456899999998765322 222333 34457899999999987543 3445568999999999998632
Q ss_pred ---CCCCeEEEEEcChhHHHHHHHHHh
Q 004149 613 ---ANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 613 ---~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
.-.+||++.|.|.||.+.+..+.+
T Consensus 463 llG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 463 LLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HhCcccceEEEeccCCCcceeehhHHH
Confidence 356899999999999987766543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.055 Score=50.90 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=107.1
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
....|..|+...++-.....+.+|++..|....-- ......+-.++-+.|+.+ ++-.+ .+
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dnsk----f~s~G---------------gD 80 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDNSK----FASCG---------------GD 80 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccccc----cccCC---------------CC
Confidence 34557777666666667789999999888765541 222335667788888888 66543 33
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
..++++|+ ++|+ .+++..+.+.+..++|+.+.+-++-.+.+ ..+..||-.+
T Consensus 81 k~v~vwDV-----------------~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD-----------~s~r~wDCRS 132 (307)
T KOG0316|consen 81 KAVQVWDV-----------------NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD-----------SSVRLWDCRS 132 (307)
T ss_pred ceEEEEEc-----------------ccCeeeeecccccceeeEEEecCcceEEEecccc-----------ceeEEEEccc
Confidence 37888888 6665 57888888889999999888766554444 2356666544
Q ss_pred CCC--CCCccce-eeEEec-------ccccCCCC-----------CcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 359 NGN--FSSLEKI-VDVIPV-------VQCAEGDC-----------FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 359 ~~~--~~~~~~~-~~~~~~-------~~~~~~~~-----------f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
... .|+..+. +.+..+ +....++. +.-.....+...+||+||.-++.++- + ..|-.
T Consensus 133 ~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l-~--stlrL 209 (307)
T KOG0316|consen 133 RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL-D--STLRL 209 (307)
T ss_pred CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec-c--ceeee
Confidence 433 2222111 111111 10001111 11011223567899999997665543 3 34666
Q ss_pred EECCCCcEEEec
Q 004149 418 VNVSSGELLRIT 429 (771)
Q Consensus 418 ~d~~tg~~~~l~ 429 (771)
+|..||++-..-
T Consensus 210 lDk~tGklL~sY 221 (307)
T KOG0316|consen 210 LDKETGKLLKSY 221 (307)
T ss_pred cccchhHHHHHh
Confidence 788888765443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.067 Score=58.18 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=66.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+-+|-...+||-. .+-+.+++ +......++..... .+.+++||+||+++|..-..
T Consensus 40 ~~gLa~~p~Sgl~aYpA-----GCvVVlfn~~~~tQ~hlvnssRk---------~~t~vAfS~~GryvatGEcG------ 99 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYPA-----GCVVVLFNVDSCTQSHLVNSSRK---------PLTCVAFSQNGRYVATGECG------ 99 (1080)
T ss_pred CCcccccccccceeecc-----CcEEEEEcccccchhheecccCc---------ceeEEEEcCCCcEEEecccC------
Confidence 34456677777788753 23344444 32333344443222 24799999999988773111
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..+.+-||+++.-. +..+ ......+.-++|||.+++ |
T Consensus 100 ------------------------------------~~pa~kVw~la~h~vVAEf--vdHKY~vtcvaFsp~~ky----v 137 (1080)
T KOG1408|consen 100 ------------------------------------RTPASKVWSLAFHGVVAEF--VDHKYNVTCVAFSPGNKY----V 137 (1080)
T ss_pred ------------------------------------CCccceeeeeccccchhhh--hhccccceeeeecCCCcE----E
Confidence 34678889987644 3334 456678889999999998 9
Q ss_pred EEEeecCc
Q 004149 259 VFVGWSSE 266 (771)
Q Consensus 259 ~~~~~~~~ 266 (771)
+-++..++
T Consensus 138 vSVGsQHD 145 (1080)
T KOG1408|consen 138 VSVGSQHD 145 (1080)
T ss_pred Eeeccccc
Confidence 98875444
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.42 Score=51.08 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=62.4
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+.+..|+-||=.++..... .+++++|+.+.+...+- .. ...+| +-.+.|.
T Consensus 230 svTal~F~d~gL~~aVGts~-----------G~v~iyDLRa~~pl~~k-dh-----------~~e~p------i~~l~~~ 280 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTST-----------GSVLIYDLRASKPLLVK-DH-----------GYELP------IKKLDWQ 280 (703)
T ss_pred cceEEEecCCceeEEeeccC-----------CcEEEEEcccCCceeec-cc-----------CCccc------eeeeccc
Confidence 47788999999888765544 36999999886653321 11 11222 3455664
Q ss_pred cC--CCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 398 SD--GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 398 ~d--g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+. ...| ++. ......|| |..+|+.-.......++...-+-++++.+++.-.++.. .+.|+-++.
T Consensus 281 ~~~~q~~v-~S~-Dk~~~kiW--d~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m-~~yyiP~LG 346 (703)
T KOG2321|consen 281 DTDQQNKV-VSM-DKRILKIW--DECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKM-HTYYIPSLG 346 (703)
T ss_pred ccCCCceE-Eec-chHHhhhc--ccccCCceeeccccCCcCceeeecCCceEEEecCCCcc-eeEEccccC
Confidence 43 2223 332 22223344 77777766554444444444555666655555444444 345554444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.51 Score=46.76 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=103.5
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+..=+|++|++++|...+.. ...+|.+. +.+.-...+.- ..| |....++.|+|.+.+|+-.+.++..-
T Consensus 12 pitchAwn~drt~iAv~~~~~--evhiy~~~-~~~~w~~~htl-s~H-----d~~vtgvdWap~snrIvtcs~drnay-- 80 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNH--EVHIYSML-GADLWEPAHTL-SEH-----DKIVTGVDWAPKSNRIVTCSHDRNAY-- 80 (361)
T ss_pred ceeeeeecCCCceEEeccCCc--eEEEEEec-CCCCceeceeh-hhh-----CcceeEEeecCCCCceeEccCCCCcc--
Confidence 356679999999999876542 23344443 22322222221 112 11236899999999998876555322
Q ss_pred CccCCCCCCCCCCccCCCCCC------------cccccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCCccce
Q 004149 180 TFSLGSTKGGSSDKDCNSWKG------------QGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQ 244 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~~~~~ 244 (771)
.|... ....|+. -+.|+|.-..-.++.+...|.|+=.+..+-= +..+.|-...+..
T Consensus 81 Vw~~~---------~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 81 VWTQP---------SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred ccccC---------CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 12110 0111111 1225554444444555555555554443311 1111344446778
Q ss_pred EEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCcccccee
Q 004149 245 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPR 323 (771)
Q Consensus 245 ~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~ 323 (771)
..|.|++-. |+..+-+.. | |--..|+-+++..| ....| ..+..=|+ ........+-+....
T Consensus 152 ldWhpnnVL----laaGs~D~k--------~--rVfSayIK~Vdekp-ap~pW---gsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 152 LDWHPNNVL----LAAGSTDGK--------C--RVFSAYIKGVDEKP-APTPW---GSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred eeccCCcce----ecccccCcc--------e--eEEEEeeeccccCC-CCCCC---ccCCcHHHHHHhhccCCCceeeeE
Confidence 899998765 554431111 1 11133444442110 00000 00000000 111223345578899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|||+|..|+|...+. .+.+.|....
T Consensus 214 fs~sG~~lawv~Hds-----------~v~~~da~~p 238 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDS-----------TVSFVDAAGP 238 (361)
T ss_pred eCCCCCEeeEecCCC-----------ceEEeecCCC
Confidence 999999999999875 3666665543
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.024 Score=59.38 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcE---EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.+|++||.... ...+......++..|+. +..+++.+.... .......+.+.+-++.+.... ..
T Consensus 61 pivlVhG~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLPLDYRLAILGWLTNGVYAFELSGGDGT----------YSLAVRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccCcCC--cchhhhhhhhhcchHHHhcccccccccccCCC----------ccccccHHHHHHHHHHHHhhc--CC
Confidence 58999996332 33555555567777777 888887753110 111122445555555555442 35
Q ss_pred CeEEEEEcChhHHHHHHHHHhCC--CceeEEEecCCcc
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLC 651 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~p~~ 651 (771)
.++.++||||||..+.+++...+ .+++.++..++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 78999999999999999998877 7888888777643
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.067 Score=53.55 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=49.1
Q ss_pred ceEEEEEccCC-ceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININSG-EVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~-~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..||.+|...= .+..+ ..+ ...+.++.|||-|+. +|-.+ +++ .|.++..
T Consensus 251 ~nlY~~DmR~l~~p~~v--~~dhvsAV~dVdfsptG~E----fvsgs-------------yDk--sIRIf~~-------- 301 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNV--HKDHVSAVMDVDFSPTGQE----FVSGS-------------YDK--SIRIFPV-------- 301 (433)
T ss_pred ccceehhhhhhcccchh--hcccceeEEEeccCCCcch----hcccc-------------ccc--eEEEeec--------
Confidence 67888886431 12222 112 224668899999998 77666 233 3444444
Q ss_pred hhhhhcCCCCCCcceecCC--CCccccceeecCCCCEEEEEecC
Q 004149 296 ELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~--~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
..+..+.+.. .-..+..+.||-|.++|+-.+.+
T Consensus 302 ---------~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 302 ---------NHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred ---------CCCcchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence 3343333322 23358899999999988766554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.34 Score=54.41 Aligned_cols=232 Identities=11% Similarity=-0.012 Sum_probs=138.7
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+++|.|.--+|+..-.....+ .|+........++.++......+.|-+...--+++..+..|-||+....+..--.
T Consensus 13 KglsFHP~rPwILtslHsG~IQ--lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL- 89 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQ--LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL- 89 (1202)
T ss_pred cceecCCCCCEEEEeecCceee--eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-
Confidence 5899999999888765555443 4544344444455555555555566555433344555678888988766543221
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~ 314 (771)
...-..+....|.+.=-+ |+-.+ .+..|.+++. .+.. +-.||.
T Consensus 90 ~GHlDYVRt~~FHheyPW----IlSAS---------------DDQTIrIWNw-----------------qsr~~iavltG 133 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPW----ILSAS---------------DDQTIRIWNW-----------------QSRKCIAVLTG 133 (1202)
T ss_pred ccccceeEEeeccCCCce----EEEcc---------------CCCeEEEEec-----------------cCCceEEEEec
Confidence 233346778888888787 77666 2336777776 5555 467888
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc------------------eeeEEeccc
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK------------------IVDVIPVVQ 376 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~------------------~~~~~~~~~ 376 (771)
++..+...+|.|....|+-.|-+. .+.+||+.+=..+....+ .+.+++.+-
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQ-----------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQ-----------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred CceEEEeeccCCccceEEEecccc-----------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999999999888888888765 377777755333332222 111222221
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe--cCCCCCceeeEEeecCCEE
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI--TPAESNFSWSLLTLDGDNI 447 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l--~~~~~~~~~~~~s~d~~~l 447 (771)
.. ++.++.-.+|.|--- |+++..++....||+++-. ...+.= ......++...|.|..+.|
T Consensus 203 EG--------HDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~lI 265 (1202)
T KOG0292|consen 203 EG--------HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQDLI 265 (1202)
T ss_pred cc--------cccccceEEecCCcc-eEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCcccee
Confidence 11 223455566777654 6677777778889998853 222211 1122244445555554433
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.035 Score=54.93 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=63.7
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ 616 (771)
|+++++|+..+. ...|..++..|... ..|+..+.+|.+... .....++++.+.+ +.|.+.. ...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~Q--P~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRVQ--PEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHhC--CCC
Confidence 568899996554 34566677777665 889999999843211 1122355554433 3333321 245
Q ss_pred eEEEEEcChhHHHHHHHHHhC---CCceeEEEecCCccc
Q 004149 617 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 652 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~ 652 (771)
.+.|.|+|+||.+|.-+|.+- .+.++.++++.++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 799999999999999888753 335666666655544
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.7 Score=49.10 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=40.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+...+||+||.+|+- +|...++.+| .+...++... +..-+ ..+.||||+..-+.+.++
T Consensus 252 ~~V~~L~fS~~G~~LlS-----GG~E~VLv~Wq~~T~~kqfLPRLgs~I----------~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLS-----GGREGVLVLWQLETGKKQFLPRLGSPI----------LHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cccceeEEecCCceEee-----cccceEEEEEeecCCCcccccccCCee----------EEEEEcCCCCeEEEEecC
Confidence 45788999999999864 3556689999 3333344433 22222 689999999987776543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.4 Score=41.91 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=36.6
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
++ .+++... .+. ++.+|+.+|+.. ...... ........+++.|++... -..++..++.+++
T Consensus 173 ~~-~v~~~~~-~g~--~~~~d~~tg~~~-w~~~~~-~~~~~~~~~~~~l~~~~~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 DG-RVYVSSG-DGR--VVAVDLATGEKL-WSKPIS-GIYSLPSVDGGTLYVTSS----DGRLYALDLKTGK 233 (238)
T ss_dssp TT-EEEEECC-TSS--EEEEETTTTEEE-EEECSS--ECECEECCCTEEEEEET----TTEEEEEETTTTE
T ss_pred CC-EEEEEcC-CCe--EEEEECCCCCEE-EEecCC-CccCCceeeCCEEEEEeC----CCEEEEEECCCCC
Confidence 44 5655543 332 677799999855 333322 122235678888877762 3678988887654
|
... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.8 Score=42.94 Aligned_cols=113 Identities=12% Similarity=0.176 Sum_probs=68.5
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
+++.|+||.+.|+-+.+. ..+|.-++.++.-++.++
T Consensus 89 S~LTynp~~rtLFav~n~-------------------------------------------p~~iVElt~~GdlirtiP- 124 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNK-------------------------------------------PAAIVELTKEGDLIRTIP- 124 (316)
T ss_pred cceeeCCCcceEEEecCC-------------------------------------------CceEEEEecCCceEEEec-
Confidence 799999999988776443 367788887776666663
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc------c
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP------V 309 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~------~ 309 (771)
...-.....+.|.-+|+ .+.+. + |..+||.+.++. ++.. .
T Consensus 125 L~g~~DpE~Ieyig~n~-----fvi~d-E-------------R~~~l~~~~vd~---------------~t~~~~~~~~~ 170 (316)
T COG3204 125 LTGFSDPETIEYIGGNQ-----FVIVD-E-------------RDRALYLFTVDA---------------DTTVISAKVQK 170 (316)
T ss_pred ccccCChhHeEEecCCE-----EEEEe-h-------------hcceEEEEEEcC---------------CccEEeccceE
Confidence 33333455677876665 23222 1 233555554421 1111 1
Q ss_pred eecCC--C-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 310 VNLTE--S-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 310 ~~lt~--~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
..|-. . +......+|+|....|+|...++ ...||.++
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~---------P~~I~~~~ 210 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN---------PIGIFEVT 210 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccC---------CcEEEEEe
Confidence 11211 1 33467899999999998888775 24577776
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.61 Score=49.90 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=64.0
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc--
Q 004149 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-- 317 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-- 317 (771)
..+..+.|+-||-. +++.+ ..+++|++|| -+.++-.+-.+..
T Consensus 229 ~svTal~F~d~gL~----~aVGt---------------s~G~v~iyDL-----------------Ra~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 229 PSVTALKFRDDGLH----VAVGT---------------STGSVLIYDL-----------------RASKPLLVKDHGYEL 272 (703)
T ss_pred CcceEEEecCCcee----EEeec---------------cCCcEEEEEc-----------------ccCCceeecccCCcc
Confidence 35778889988876 66554 4458999998 4444433333333
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+....|-+.+.+=..++.+. .-|.+||-.+|+.....+ +...+..+|+-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk----------~~~kiWd~~~Gk~~asiE--------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDK----------RILKIWDECTGKPMASIE--------------------PTSDLNDFCFV 322 (703)
T ss_pred ceeeecccccCCCceEEecch----------HHhhhcccccCCceeecc--------------------ccCCcCceeee
Confidence 245556644422222223222 235667766666522111 11235677888
Q ss_pred cCCCEEEEEeeeCCeeEEEEEE
Q 004149 398 SDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d 419 (771)
|++. ++|.+...+....|.+.
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCc-eEEEecCCCcceeEEcc
Confidence 8887 66777766666666554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.2 Score=44.25 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=65.9
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 279 PCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
.++|-++|+ ...+ +..+..+...+...+.+-+|..||..+... .-|.++|
T Consensus 158 ~GqvQi~dL-----------------~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG----------TLIRIFd 210 (346)
T KOG2111|consen 158 TGQVQIVDL-----------------ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG----------TLIRIFD 210 (346)
T ss_pred cceEEEEEh-----------------hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc----------EEEEEEE
Confidence 357888888 3322 355666777888999999999999888763 3477888
Q ss_pred cCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 356 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
..+|+..+- +.... -...++.++||||+..|.++ +..++.++|.+..
T Consensus 211 t~~g~~l~E----------~RRG~-------d~A~iy~iaFSp~~s~Lavs-SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 211 TEDGTLLQE----------LRRGV-------DRADIYCIAFSPNSSWLAVS-SDKGTLHIFSLRD 257 (346)
T ss_pred cCCCcEeee----------eecCC-------chheEEEEEeCCCccEEEEE-cCCCeEEEEEeec
Confidence 877765321 11100 01134577899999877554 5688889998864
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.063 Score=57.57 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=81.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH---------------HCCcEEEEECCCCCCCC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS---------------SVGYSLLIVNYRGSLGF 580 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la---------------~~G~~V~~~d~rG~~~~ 580 (771)
..+..+..|++.... .....|+||++-|||+.....+.....-.|. .+-..++-.|.+-..||
T Consensus 54 ~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGF 131 (454)
T KOG1282|consen 54 SEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGF 131 (454)
T ss_pred CCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCc
Confidence 457789888887652 4456799999999998764322211111110 11145777777744444
Q ss_pred ChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh----C------CCceeEEEecCC
Q 004149 581 GEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARNP 649 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~a~v~~~p 649 (771)
.-+-.......-.....+|...++ +|+.+.+......+.|.|-|++|..+-.+|.. . .-.+++.++.+|
T Consensus 132 SYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg 211 (454)
T KOG1282|consen 132 SYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNG 211 (454)
T ss_pred cccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCc
Confidence 332111111111122356666555 56666676677889999999999777666542 1 124799999999
Q ss_pred ccch
Q 004149 650 LCNL 653 (771)
Q Consensus 650 ~~~~ 653 (771)
+.+.
T Consensus 212 ~td~ 215 (454)
T KOG1282|consen 212 LTDP 215 (454)
T ss_pred ccCc
Confidence 8764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.9 Score=49.27 Aligned_cols=85 Identities=8% Similarity=0.121 Sum_probs=50.9
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.+||-+ |...... .+.......++|-|.|.. |+.+... ...+.|..+.-
T Consensus 222 RkirV~drE-g~Lns~s-e~~~~l~~~LsWkPsgs~----iA~iq~~------------~sd~~IvffEr---------- 273 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTS-EPVEGLQHSLSWKPSGSL----IAAIQCK------------TSDSDIVFFER---------- 273 (1265)
T ss_pred eeEEEeccc-chhhccc-CcccccccceeecCCCCe----Eeeeeec------------CCCCcEEEEec----------
Confidence 567888876 5443331 334445678899999988 7776522 22234555553
Q ss_pred hhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecC
Q 004149 298 ELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 298 ~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+|-+. .+.......+....|+.++.-|+.....
T Consensus 274 -------NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 274 -------NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred -------CCccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 22221 1122233337889999999998876554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.088 Score=57.94 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=91.5
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..+-.||+...+-+... .....++.++.|||--.. ..+... ..+.|-.+|+-
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~--------------dsG~lqlWDlR------- 207 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIH--------------DSGYLQLWDLR------- 207 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEec--------------CCceEEEeecc-------
Confidence 4467888998776655552 223447889999996543 333332 22245566651
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
... -..+++.+.+.+....|+|++.+||...++ ..+.+||+.++....+. ++..
T Consensus 208 ---------qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-----------K~vkiWd~t~~~~~~~~-----tInT 262 (839)
T KOG0269|consen 208 ---------QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-----------KMVKIWDMTDSRAKPKH-----TINT 262 (839)
T ss_pred ---------CchhHHHHhhcccCceEEEeecCCCceeeecCCC-----------ccEEEEeccCCCcccee-----EEee
Confidence 233 347789999999999999999999877744 35888888776554321 1111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
+ ..+..+.|-|+-.+.+.+.+-.+...++.+|+.
T Consensus 263 i-------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 263 I-------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred c-------------ceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 1 024577899988877777665556667777764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.36 Score=48.86 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=72.6
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eec
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAV 233 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l 233 (771)
..++|||..+.+++... ....|.+||+..+.- ...
T Consensus 261 EDLqWSptE~~vfaScS-------------------------------------------~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCS-------------------------------------------CDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred hhhccCCccCceEEeee-------------------------------------------cCceEEEEEecCCCccceeE
Confidence 68999999988877633 236888999877621 112
Q ss_pred cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceec
Q 004149 234 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 312 (771)
Q Consensus 234 ~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l 312 (771)
+ ......+.-+.|+-+-.. |++.+ .++.+-++||-.. ..++ +-.+
T Consensus 298 ~-kAh~sDVNVISWnr~~~l----LasG~---------------DdGt~~iwDLR~~--------------~~~~pVA~f 343 (440)
T KOG0302|consen 298 T-KAHNSDVNVISWNRREPL----LASGG---------------DDGTLSIWDLRQF--------------KSGQPVATF 343 (440)
T ss_pred e-eccCCceeeEEccCCcce----eeecC---------------CCceEEEEEhhhc--------------cCCCcceeE
Confidence 1 223345667789876664 66654 2235666665211 2232 3345
Q ss_pred CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 313 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 313 t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.-+...+.+..|+|....++-.+.. ..+|-+||+...
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~----------D~QitiWDlsvE 380 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGE----------DNQITIWDLSVE 380 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccC----------CCcEEEEEeecc
Confidence 5567789999999977666555533 357888887543
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.43 Score=50.71 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=74.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEE-EEECCCCCCCCChhhhhcCCCCccccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSL-LIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V-~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+.++- +++-| ++-+.|+.|++-|.-.. .+|.. .-.|.+.|.-. +.-|.|-.+| +|. .+..+
T Consensus 275 reEi~-yYFnP----GD~KPPL~VYFSGyR~a---EGFEg-y~MMk~Lg~PfLL~~DpRleGG---aFY------lGs~e 336 (511)
T TIGR03712 275 RQEFI-YYFNP----GDFKPPLNVYFSGYRPA---EGFEG-YFMMKRLGAPFLLIGDPRLEGG---AFY------LGSDE 336 (511)
T ss_pred CCeeE-EecCC----cCCCCCeEEeeccCccc---Ccchh-HHHHHhcCCCeEEeeccccccc---eee------eCcHH
Confidence 44453 34445 44567999999983322 22321 12344566654 4557776333 321 12112
Q ss_pred h-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC
Q 004149 597 V-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 660 (771)
Q Consensus 597 ~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 660 (771)
. +.+.+.|+.-.+.-..+.+.+.|.|.|||.+-|+.++++. ...|+|+.-|.+++-.+....
T Consensus 337 yE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGtiA~n~ 399 (511)
T TIGR03712 337 YEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTIASRM 399 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhhhccc
Confidence 2 2344455444443347888999999999999999999874 357899999999887665433
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.35 Score=50.12 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=100.8
Q ss_pred cCceEEEEEccCCc---eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 216 RQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+..+|-+||+.+.+ .....+++....++...|+|-... -++.+. .++.|...|+
T Consensus 208 K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssS--------------yDGtiR~~D~----- 264 (498)
T KOG4328|consen 208 KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSS--------------YDGTIRLQDF----- 264 (498)
T ss_pred CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeec--------------cCceeeeeee-----
Confidence 44788899985332 222224777778899999998766 455441 2346888888
Q ss_pred hhhhhhhhcCCCCCCccee-cCC--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC--CCccc
Q 004149 293 EASELELKESSSEDLPVVN-LTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SSLEK 367 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~-lt~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~ 367 (771)
+++.... ++. ......+..|+.+...++|..+-. .+.++|+.+++.. .+.
T Consensus 265 ------------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~-- 319 (498)
T KOG4328|consen 265 ------------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLR-- 319 (498)
T ss_pred ------------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhh--
Confidence 4443322 222 333466778888888787776542 3556676665531 110
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-Eec--CCCCCceeeEEeecC
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RIT--PAESNFSWSLLTLDG 444 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~--~~~~~~~~~~~s~d~ 444 (771)
+...-+.++++.|--.+++.+++-++...||-+.--.++.. .|. ...-.+...-|||.+
T Consensus 320 ------------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 320 ------------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ------------------hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 01112456667777777888887777777885532223322 121 222245667899998
Q ss_pred CEEEEEEe
Q 004149 445 DNIIAVSS 452 (771)
Q Consensus 445 ~~l~~~~s 452 (771)
..|+.++.
T Consensus 382 gtl~TT~~ 389 (498)
T KOG4328|consen 382 GTLLTTCQ 389 (498)
T ss_pred CceEeecc
Confidence 88766653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.9 Score=43.95 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=64.6
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
-+..|.+||+.+|....- .........+..+|..+. |+..+ .. .+|.++|.-.
T Consensus 279 wDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~~~L----l~~gs-------------sd--r~irl~DPR~------ 331 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKST--LTTNKSLNCISYSPLSKL----LASGS-------------SD--RHIRLWDPRT------ 331 (423)
T ss_pred ccceEEEEEeecccceee--eecCcceeEeecccccce----eeecC-------------CC--CceeecCCCC------
Confidence 457999999998876544 344456777889998885 55544 22 2677777521
Q ss_pred hhhhhcCCCCCCcc--eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 296 ELELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~~--~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.++.. ..+..+..-+.+..|||-..++ |++... .+.+.+||+.+..
T Consensus 332 ---------~~gs~v~~s~~gH~nwVssvkwsp~~~~~-~~S~S~---------D~t~klWDvRS~k 379 (423)
T KOG0313|consen 332 ---------GDGSVVSQSLIGHKNWVSSVKWSPTNEFQ-LVSGSY---------DNTVKLWDVRSTK 379 (423)
T ss_pred ---------CCCceeEEeeecchhhhhheecCCCCceE-EEEEec---------CCeEEEEEeccCC
Confidence 23333 4566777789999999987765 333221 2457788876644
|
|
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.077 Score=50.91 Aligned_cols=111 Identities=9% Similarity=0.103 Sum_probs=57.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh-cCCC---------
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPG--------- 590 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~-~~~~--------- 590 (771)
-+...+.|. +..|+.+.+-|-+...+... ..+...+..+|...+...-+- ||+.-.. .+..
T Consensus 102 A~~~~liPQ-----K~~~KOG~~a~tgdh~y~rr-~~L~~p~~k~~i~tmvle~pf---Ygqr~p~~q~~~~Le~vtDlf 172 (371)
T KOG1551|consen 102 ARVAWLIPQ-----KMADLCLSWALTGDHVYTRR-LVLSKPINKREIATMVLEKPF---YGQRVPEEQIIHMLEYVTDLF 172 (371)
T ss_pred eeeeeeccc-----CcCCeeEEEeecCCceeEee-eeecCchhhhcchheeeeccc---ccccCCHHHHHHHHHHHHHHH
Confidence 334445553 34576666665332222222 123445677888887777654 4442110 0000
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeE
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 643 (771)
..|...++++...+.|-.+ ..-.+.+|+|-||||.+|.++...++.-++-
T Consensus 173 ~mG~A~I~E~~~lf~Ws~~---~g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~ 222 (371)
T KOG1551|consen 173 KMGRATIQEFVKLFTWSSA---DGLGNLNLVGRSMGGDIANQVGSLHQKPVAT 222 (371)
T ss_pred HhhHHHHHHHHHhcccccc---cCcccceeeeeecccHHHHhhcccCCCCccc
Confidence 0111112222222222111 2346799999999999999998877654443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=3.4 Score=41.17 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=50.3
Q ss_pred CceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 217 QPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
+.+|.+|++..=+. ..+ -+....+..++..|.|| |+..- .++..|..++|
T Consensus 106 DG~i~iw~~~~W~~~~sl--K~H~~~Vt~lsiHPS~K-----LALsV--------------g~D~~lr~WNL-------- 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSL--KAHKGQVTDLSIHPSGK-----LALSV--------------GGDQVLRTWNL-------- 156 (362)
T ss_pred CCcEEEEEcCCeEEeeee--cccccccceeEecCCCc-----eEEEE--------------cCCceeeeehh--------
Confidence 36788888754322 223 23344588999999999 55432 13346777777
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
-.|..-.+..-......+.|+|.|.+++....+
T Consensus 157 ---------V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 157 ---------VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ---------hcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 444332222222334559999999988776654
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.13 Score=55.65 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=49.1
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCC--------------------CC-EEEEEeCCCCccCCCCCChHHHHHHH
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKG--------------------VE-TKVIVFPNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g--------------------~~-~~~~~~~~~~H~~~~~~~~~~~~~~i 762 (771)
..++||..|..|.+||....+.+.+.|+-.+ .+ .+++.+-++||... ......+..+
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp--~qP~~al~m~ 424 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFIMF 424 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC--CCHHHHHHHH
Confidence 3799999999999999999999988885211 12 67788889999884 3566777888
Q ss_pred HHHHHH
Q 004149 763 GLWFKK 768 (771)
Q Consensus 763 ~~wl~~ 768 (771)
..|++.
T Consensus 425 ~~Fi~~ 430 (433)
T PLN03016 425 QRWISG 430 (433)
T ss_pred HHHHcC
Confidence 888753
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.031 Score=54.44 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC----CceeEEEecCC
Q 004149 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNP 649 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~p 649 (771)
..|++++.+...-.+++|.+.|||.||.+|.+++...+ +++..+....+
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 44555544421112446999999999999999988743 45666665443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.3 Score=43.43 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.9
Q ss_pred ceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCC
Q 004149 218 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 218 ~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..--+||+++|. -++| +..+..+..++|+-+|..
T Consensus 173 TTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~ 210 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD 210 (364)
T ss_pred CeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc
Confidence 566788988873 3566 677778999999997775
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.032 Score=54.52 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.5
Q ss_pred CCeEEEEEcChhHHHHHHHHHh
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999877653
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.066 Score=59.39 Aligned_cols=70 Identities=19% Similarity=0.363 Sum_probs=40.9
Q ss_pred CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC----CCC---CCeEEEEEcChhHHHHHHHHHhCC
Q 004149 566 GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LAN---PSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 566 G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d---~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
.|..+++|+-+. + ....+.......+=+.+||+++.+.. ..+ |..|.++||||||.+|..++.. |
T Consensus 132 ~~DFFaVDFnEe--~-----tAm~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-k 203 (973)
T KOG3724|consen 132 SFDFFAVDFNEE--F-----TAMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-K 203 (973)
T ss_pred ccceEEEcccch--h-----hhhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-h
Confidence 356667776431 0 11222332333555667777766532 123 6679999999999999877653 5
Q ss_pred CceeE
Q 004149 639 DKFVA 643 (771)
Q Consensus 639 ~~~~a 643 (771)
....+
T Consensus 204 n~~~~ 208 (973)
T KOG3724|consen 204 NEVQG 208 (973)
T ss_pred hhccc
Confidence 44433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.5 Score=51.52 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=35.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
+....|--|+..|.++...+ .++.++ ......-+..+..++ ...+||||++.++++....
T Consensus 71 i~s~~fl~d~~~i~v~~~~G----~iilvd~et~~~eivg~vd~GI----------~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALG----DIILVDPETLELEIVGNVDNGI----------SAASWSPDEELLALITGRQ 131 (1265)
T ss_pred eEEEEEecccceEEEEecCC----cEEEEcccccceeeeeeccCce----------EEEeecCCCcEEEEEeCCc
Confidence 45555666666665554332 344444 222222233334444 6899999999999987654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.99 E-value=4 Score=40.53 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=36.8
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCC-cEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg-~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
+..++|+|=-.++ ++...+|-..+| |+.+. ++.++..-...++...|+.||..|+...+
T Consensus 235 VNai~Fhp~~~tf-aTgGsDG~V~~W--d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTF-ATGGSDGIVNIW--DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceE-EecCCCceEEEc--cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 3567788875544 454445555555 55443 35555555445677889999998876654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.43 Score=46.66 Aligned_cols=156 Identities=12% Similarity=0.143 Sum_probs=97.2
Q ss_pred CCccCceEEEEEccCCceee---c-------c----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004149 213 AGKRQPSLFVININSGEVQA---V-------K----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~---l-------~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
.+..+..|.+||++...-.. + - .......+..+.|-|-... +...+. .
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----mFtssS--------------F 122 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----MFTSSS--------------F 122 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----eeeccc--------------c
Confidence 44567889999987543111 1 0 1122346778899997776 555442 2
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC--EEEEEecCCCCCCCCccccccceeeec
Q 004149 279 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK--FLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~--~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+..|-++|. ++-+......-++.+.+-+|||=.. .|+-...+ ..++.+.|+
T Consensus 123 DhtlKVWDt-----------------nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr----------~~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDT-----------------NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR----------DVQVRLCDI 175 (397)
T ss_pred cceEEEeec-----------------ccceeeEEeecCceeehhhcChhhhcceEEEEecC----------CCcEEEEec
Confidence 225666665 4444333333445566677887554 23333333 357888999
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
++|...-...+.. .++-.+.|||-..+++++.+.++..+||-|...+|-...+...+
T Consensus 176 ~SGs~sH~LsGHr-------------------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 176 ASGSFSHTLSGHR-------------------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred cCCcceeeecccc-------------------CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 8887533322221 13457789999999999999999999999988888777665443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.88 E-value=3.7 Score=43.37 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=82.0
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...+|.+..+.++....-.+.+..-.+.-+.+||-.+. ++.++- ..+.+.++|+
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~----lL~~as--------------d~G~VtlwDv-------- 194 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF----LLSIAS--------------DKGAVTLWDV-------- 194 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccce----eeEeec--------------cCCeEEEEec--------
Confidence 34677777777765322211333445567789998887 766552 2235667776
Q ss_pred hhhhhcCCCCCCcc--eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 296 ELELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 296 ~~~~~~~~~~~~~~--~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
.+... ..+..+...+....|||-...|+..-.- ...|+++|...... +...
T Consensus 195 ---------~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~----------Dkki~~yD~~s~~s---~~~l----- 247 (673)
T KOG4378|consen 195 ---------QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY----------DKKINIYDIRSQAS---TDRL----- 247 (673)
T ss_pred ---------cCCCcccchhhhccCCcCcceecCCccceEEEecc----------cceEEEeecccccc---ccee-----
Confidence 33322 2334455667889999987765433321 35799999765332 1111
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.|..-+..++|+++|.+|+.-. .+.+|+.+|+..
T Consensus 248 ------------~y~~Plstvaf~~~G~~L~aG~---s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 248 ------------TYSHPLSTVAFSECGTYLCAGN---SKGELIAYDMRS 281 (673)
T ss_pred ------------eecCCcceeeecCCceEEEeec---CCceEEEEeccc
Confidence 0222356889999998665432 355788888754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.58 Score=52.58 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=59.9
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-cceE--EEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEK--EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
....++||.|+.+|-.-.. | + +.+| +-+ .... .+.+.. .|..| .+++||+||.+|+...
T Consensus 208 ~t~~~~spn~~~~Aa~d~d--G--r-I~vw~d~~~~~~~~t~t~lHW-H~~~V------~~L~fS~~G~~LlSGG----- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD--G--R-ILVWRDFGSSDDSETCTLLHW-HHDEV------NSLSFSSDGAYLLSGG----- 270 (792)
T ss_pred ceeEEeccccceEEEeccC--C--c-EEEEeccccccccccceEEEe-ccccc------ceeEEecCCceEeecc-----
Confidence 4568899999999864322 2 2 5566 433 1111 111111 11122 6999999999887632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEG 253 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~ 253 (771)
....|.+|.+++++.+-| |. ...+..++||||+..
T Consensus 271 ---------------------------------------~E~VLv~Wq~~T~~kqfL---PRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 271 ---------------------------------------REGVLVLWQLETGKKQFL---PRLGSPILHIVVSPDSDL 306 (792)
T ss_pred ---------------------------------------cceEEEEEeecCCCcccc---cccCCeeEEEEEcCCCCe
Confidence 347899999999994444 43 346788999999996
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.71 E-value=6.4 Score=41.14 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=52.5
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCc-----cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004149 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAH-----SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
+....+.+++|||++|+.+....-...|.. ....+|+.+|..+.+.. ... -..++-..+... ....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~--~~y~ld~~~~~~-----~~~~ 216 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAE--YAYPLDPPPTAP-----GDNG 216 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceE--EEEeCCcccccc-----CCCC
Confidence 345788999999998766655431111111 11256778887663311 000 011111000000 1124
Q ss_pred CCCCccccCCCEEEEEee----eCCeeEEEEEECCC
Q 004149 391 ILSNPWLSDGCTMLLSSI----WGSSQVIISVNVSS 422 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~----~~~~~~l~~~d~~t 422 (771)
+..+.+.+|++.|++... .....+||.+++..
T Consensus 217 isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 217 ISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 667889999996666555 23456799999754
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.1 Score=41.80 Aligned_cols=176 Identities=17% Similarity=0.129 Sum_probs=103.1
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....|-.+|..+|++..+. +........+.--|||.. .++- ....|-++|-
T Consensus 81 g~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~-----Witd---------------~~~aI~R~dp-------- 131 (353)
T COG4257 81 GTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSA-----WITD---------------TGLAIGRLDP-------- 131 (353)
T ss_pred ccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCe-----eEec---------------CcceeEEecC--------
Confidence 3467888999999998884 555556777888899974 3321 1115777775
Q ss_pred hhhhhcCCCCCCcceecC--C--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 296 ELELKESSSEDLPVVNLT--E--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt--~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++.+.++.+ . .......++|.++|. |.|+.+. |.++ ++|-.++ +
T Consensus 132 ---------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yG------rLdPa~~-----------~ 179 (353)
T COG4257 132 ---------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYG------RLDPARN-----------V 179 (353)
T ss_pred ---------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccce------ecCcccC-----------c
Confidence 566554433 2 234577899999998 7888775 3221 2222211 1
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEE
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~d~~~l~~ 449 (771)
+.++..+.. ...+.+|-.|||. ++|++-.+ ..|.+||..++..+.+..... ..+-..++..-+.+..
T Consensus 180 i~vfpaPqG--------~gpyGi~atpdGs-vwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wi 248 (353)
T COG4257 180 ISVFPAPQG--------GGPYGICATPDGS-VWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWI 248 (353)
T ss_pred eeeeccCCC--------CCCcceEECCCCc-EEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEE
Confidence 222222211 1346788899997 66665433 358888998887777765443 2233344433344544
Q ss_pred EEeCCCCCCeEEEEEec
Q 004149 450 VSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 450 ~~s~~~~p~~l~~~~~~ 466 (771)
+. -...++++++..
T Consensus 249 tt---wg~g~l~rfdPs 262 (353)
T COG4257 249 TT---WGTGSLHRFDPS 262 (353)
T ss_pred ec---cCCceeeEeCcc
Confidence 42 233457776643
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.36 Score=52.34 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH--------------HHH------HHCCcEEEEECCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL--------------AFL------SSVGYSLLIVNYRG 576 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~--------------~~l------a~~G~~V~~~d~rG 576 (771)
.+..+..|++.... .....|+|+++-|||++.......... ..+ -.+-..++-+|.+-
T Consensus 50 ~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPv 127 (437)
T PLN02209 50 ENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPV 127 (437)
T ss_pred CCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEEEecCCC
Confidence 34567777776542 345679999999998765321110000 001 01225788888775
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHHh----C------CCceeEEE
Q 004149 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAA 645 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~a~v 645 (771)
..|+......... .....+++|+..++....+ .+.....+++|+|.|+||..+-.+|.. . +-.+++++
T Consensus 128 GtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~ 206 (437)
T PLN02209 128 GSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYV 206 (437)
T ss_pred CCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEE
Confidence 5555432111000 1111235666666654433 344455689999999999877766542 1 11468999
Q ss_pred ecCCccch
Q 004149 646 ARNPLCNL 653 (771)
Q Consensus 646 ~~~p~~~~ 653 (771)
+.+|..+.
T Consensus 207 igng~td~ 214 (437)
T PLN02209 207 LGNPITHI 214 (437)
T ss_pred ecCcccCh
Confidence 99997764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.5 Score=46.59 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=33.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEE
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+.+.+|.-||++|+.+..++. +++=.-+|+ ++..-. .+. ......||||.+.++|.
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGa----vIVGsvdGN--RIwgKeLkg~--------~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGA----VIVGSVDGN--RIWGKELKGQ--------LLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCC----EEEEeeccc--eecchhcchh--------eccceeecccHHHHHhh
Confidence 4678899999999999876541 222111221 121110 000 11367899999988885
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.13 Score=55.15 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=55.1
Q ss_pred cchHHHHHHHHCCcEE----EE--ECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhH
Q 004149 554 SYSKSLAFLSSVGYSL----LI--VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 627 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V----~~--~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG 627 (771)
.|..+++.|.+.||.. ++ .|.|-+.. ....-...+...|+.+.+.. ..+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 5778899999988753 22 45564321 01112455666666665542 5799999999999
Q ss_pred HHHHHHHHhCCC------ceeEEEecCCc
Q 004149 628 FLTTHLIGQAPD------KFVAAAARNPL 650 (771)
Q Consensus 628 ~~a~~~a~~~p~------~~~a~v~~~p~ 650 (771)
.++..++...+. .+++.|.+++.
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 999998877643 47778877664
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.19 Score=52.00 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=74.7
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec--C
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL--T 313 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l--t 313 (771)
-....++..++.|||+++ ++-.+ ..+.|..+++..+.+..+.++.......-+..... .
T Consensus 139 ~~H~~s~~~vals~d~~~----~fsas---------------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~ 199 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR----VFSAS---------------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRK 199 (479)
T ss_pred ccccCcceEEEeeccccc----eeecC---------------CCcceeeeehhcCcccccccccchhhhhccCCCCcccc
Confidence 345567888999999996 55444 22355555553222222222211000001111111 2
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+...+...+.|+||++|++...+ ..+.+|+..+.+..+...+.. ..+.+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d-----------~~v~Iw~~~t~ehv~~~~ghr-------------------~~V~~ 249 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRD-----------RHVQIWDCDTLEHVKVFKGHR-------------------GAVSS 249 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCC-----------ceEEEecCcccchhhcccccc-------------------cceee
Confidence 344457788999999999986654 357788988877755433322 12445
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 394 NPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
++|-..-..| |+.+.+....+|.++.
T Consensus 250 L~fr~gt~~l-ys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 250 LAFRKGTSEL-YSASADRSVKVWSIDQ 275 (479)
T ss_pred eeeecCccce-eeeecCCceEEEehhH
Confidence 5665444445 4555566677777663
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.33 E-value=4.2 Score=40.44 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=40.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI 167 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~l 167 (771)
..++..+|+||-+.|..+-+ ...+++++...|+..+.+.+.. .+ ....+.|.-+|+.+
T Consensus 86 ~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~-------DpE~Ieyig~n~fv 143 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FS-------DPETIEYIGGNQFV 143 (316)
T ss_pred ccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cC-------ChhHeEEecCCEEE
Confidence 45889999999999955533 4578999998888877776643 21 11477787777644
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.076 Score=50.36 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=53.4
Q ss_pred CcEEEEECCCCCCCCChh-hhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC----C--
Q 004149 566 GYSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----P-- 638 (771)
Q Consensus 566 G~~V~~~d~rG~~~~g~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p-- 638 (771)
-..|++|-||-..-.... ...............|+.+|.++.+++.. +...++|+|||.|+.+...++... |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 378999999964322111 00000112223457899999998777642 345899999999999999998754 2
Q ss_pred -CceeEEEecCCcc
Q 004149 639 -DKFVAAAARNPLC 651 (771)
Q Consensus 639 -~~~~a~v~~~p~~ 651 (771)
.+++|.++..++.
T Consensus 124 ~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 124 KRLVAAYLIGYPVT 137 (207)
T ss_pred hhhheeeecCcccc
Confidence 2345555555543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=6.9 Score=41.74 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=24.1
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..+.+|++..+...... ......+..+.|+|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce
Confidence 67888888775554441 223556788899999984
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=4.3 Score=45.88 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=58.6
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC----ccceeecCCccccccceEEEeCCCCCeEEEEecCCC
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 121 (771)
.+.+|.||..+|+... ....+++-.+. .+.. ...+... .....|+|.++| .+..+ +...
T Consensus 367 s~avS~~g~~~A~v~~--------~~~~l~vg~~~-~~~~~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv-d~~~ 429 (599)
T PRK13613 367 RVAVSRDESRAAGISA--------DGDSVYVGSLT-PGASIGVHSWGVTAD------GRLTSPSWDGRG-DLWVV-DRDP 429 (599)
T ss_pred ceEEcCCCceEEEEcC--------CCcEEEEeccC-CCCccccccceeecc------CcccCCcCcCCC-CEEEe-cCCC
Confidence 5566788988888742 12345543331 1212 1122222 346789999999 56544 4432
Q ss_pred CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 122 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
...+++.+. ..|+... ++.+ ...| ..+..+..|+||.++|.+.+..
T Consensus 430 ~~~~vl~v~~~~G~~~~-V~~~-~l~g-----~~I~~lrvSrDG~RvAvv~~~~ 476 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVE-VRTP-ELDG-----HRVVAVRVARDGVRVALIVEKD 476 (599)
T ss_pred CCceEEEEEcCCCcEEE-eecc-ccCC-----CEeEEEEECCCccEEEEEEecC
Confidence 334444444 5554433 2222 1111 1348999999999999997643
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=3.5 Score=45.63 Aligned_cols=120 Identities=6% Similarity=-0.022 Sum_probs=63.1
Q ss_pred HHHHHHhhcCccccceEEEecC------CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccc
Q 004149 28 SKLLQDFTNISSIDKAWTFNSG------NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA 101 (771)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~------s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~ 101 (771)
.-+|.++.++|+.....++|.. +..++++++- ...+.++++. ..++..+.++... ..+..
T Consensus 14 ~p~~~~l~~i~~~~~~~~~~~~v~lTc~dst~~~l~~G---------sS~G~lyl~~--R~~~~~~~~~~~~---~~~~~ 79 (726)
T KOG3621|consen 14 APLTEVLERIPALLQPGFFPARVKLTCVDATEEYLAMG---------SSAGSVYLYN--RHTGEMRKLKNEG---ATGIT 79 (726)
T ss_pred cchhhhhhhhhhhhccccCcceEEEEEeecCCceEEEe---------cccceEEEEe--cCchhhhcccccC---ccceE
Confidence 3466777777777766665532 2233344443 2345555543 4444444444332 11335
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceE---EEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEK---EFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..-..|++...+|+....+ .-.++.+.. +.+.. ++.++....-. +.++.||+||+++++.
T Consensus 80 ~~~~vs~~e~lvAagt~~g--~V~v~ql~~-~~p~~~~~~t~~d~~~~~r------VTal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 80 CVRSVSSVEYLVAAGTASG--RVSVFQLNK-ELPRDLDYVTPCDKSHKCR------VTALEWSKNGMKLYSG 142 (726)
T ss_pred EEEEecchhHhhhhhcCCc--eEEeehhhc-cCCCcceeeccccccCCce------EEEEEecccccEEeec
Confidence 5667899988888764432 222333332 22222 23322211112 3699999999999774
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.27 Score=53.93 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=95.3
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC
Q 004149 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS 133 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~ 133 (771)
+-|.|..++.-++.+...+.|.+||+... ...+.||.. ......+.|+|-|.+.|--+.. .=+.+|+..
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh-----~~~~~sv~f~P~~~~~a~gStd-----td~~iwD~R 142 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGH-----LLNITSVDFHPYGEFFASGSTD-----TDLKIWDIR 142 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehhhh-hhhhhhhcc-----ccCcceeeeccceEEecccccc-----ccceehhhh
Confidence 34666666777778888888999998432 233344333 2345667799999877432221 124555321
Q ss_pred --cceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004149 134 --QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 134 --~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
........ ...+ ..+.|+|||++++-..++...+ .|+...++-.+.+..+........|-+.---
T Consensus 143 k~Gc~~~~~s~~~vv----------~~l~lsP~Gr~v~~g~ed~tvk--i~d~~agk~~~ef~~~e~~v~sle~hp~e~L 210 (825)
T KOG0267|consen 143 KKGCSHTYKSHTRVV----------DVLRLSPDGRWVASGGEDNTVK--IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVL 210 (825)
T ss_pred ccCceeeecCCccee----------EEEeecCCCceeeccCCcceee--eecccccccccccccccccccccccCchhhh
Confidence 11222221 1111 5789999999998877754433 4443222222222222222222223222122
Q ss_pred ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
+..+..+..+-.||+++=++..-. -+....+....|.|||+.
T Consensus 211 la~Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKI 252 (825)
T ss_pred hccCCCCceeeeeccceeEEeecc-CCccCCceeeeecCCcee
Confidence 234456678889998764433221 233456778899999984
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.47 Score=51.47 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=85.2
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCC--CCCCCCccCCCCCCcccc-cCCcCccc-CCccCceEEEEEccCCcee
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGST--KGGSSDKDCNSWKGQGDW-EEDWGETY-AGKRQPSLFVININSGEVQ 231 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~d~g~~~-~~~~~~~l~v~d~~~~~~~ 231 (771)
..+..--+|+.|+..+.+.+.+ .|+.... -.......+..|..-..| ..+ .+++ ++.-...|++||+.++..+
T Consensus 77 NDiiL~~~~~tlIS~SsDtTVK--~W~~~~~~~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~ 153 (735)
T KOG0308|consen 77 NDIILCGNGKTLISASSDTTVK--VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTAT 153 (735)
T ss_pred hhHHhhcCCCceEEecCCceEE--EeecccCcchhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchh
Confidence 4555556677777666655443 3332111 122334445566654555 222 2332 3334679999999988542
Q ss_pred eccCCCC-----------CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhh
Q 004149 232 AVKGIPK-----------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 232 ~l~~~~~-----------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
.+. ... ..++.+++-.+.|. ++..+ .....|..+|.-
T Consensus 154 l~~-s~n~~t~~sl~sG~k~siYSLA~N~t~t-----~ivsG--------------gtek~lr~wDpr------------ 201 (735)
T KOG0308|consen 154 LVA-SFNNVTVNSLGSGPKDSIYSLAMNQTGT-----IIVSG--------------GTEKDLRLWDPR------------ 201 (735)
T ss_pred hhh-hccccccccCCCCCccceeeeecCCcce-----EEEec--------------CcccceEEeccc------------
Confidence 221 111 11233334344442 22222 123367777751
Q ss_pred cCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 301 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 301 ~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
...+..+|..+...++....++||++++-.+.+. .|.+||+..
T Consensus 202 ----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-----------tIrlWdLgq 244 (735)
T KOG0308|consen 202 ----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-----------TIRLWDLGQ 244 (735)
T ss_pred ----cccceeeeeccccceEEEEEcCCCCeEeecCCCc-----------eEEeeeccc
Confidence 3345667777777899999999999998887764 477888754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.56 E-value=14 Score=40.58 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=86.7
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCc--ceEEEecCCcc
Q 004149 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQ--LEKEFHVPQTV 145 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ 145 (771)
+.+.+|.++..++.. +..++.-. ...+...+..|.--+++..+++- ++.+|+ .+. ..+.... ..
T Consensus 74 sDD~~IrVfnynt~e-kV~~FeAH-----~DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~wa~~qtfeG--H~ 140 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGE-KVKTFEAH-----SDYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEWACEQTFEG--HE 140 (794)
T ss_pred cCCceEEEEecccce-eeEEeecc-----ccceeeeeecCCCCeEEecCCcc-----EEEEeeccCceeeeeEEcC--cc
Confidence 444556665553331 22333222 25677888888777776554433 667772 222 2222221 11
Q ss_pred cccccCCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC--cCcccCCccCceEEE
Q 004149 146 HGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED--WGETYAGKRQPSLFV 222 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~g~~~~~~~~~~l~v 222 (771)
| ....++|.| |-...|..+-+++.+ .|...........+.+..-.+-+.|-+- -.-.+++..+..|-+
T Consensus 141 H-------yVMqv~fnPkD~ntFaS~sLDrTVK--VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 141 H-------YVMQVAFNPKDPNTFASASLDRTVK--VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred e-------EEEEEEecCCCccceeeeeccccEE--EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 1 125889999 666777777666554 4554333333334444444444444332 224556667789999
Q ss_pred EEccCCceeeccCCCC-CCccceEEEecCCC
Q 004149 223 ININSGEVQAVKGIPK-SLSVGQVVWAPLNE 252 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~ 252 (771)
||-.+....+. ..+ ...+..+.|.|.=.
T Consensus 212 WDyQtk~CV~T--LeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 212 WDYQTKSCVQT--LEGHTNNVSFVFFHPELP 240 (794)
T ss_pred eecchHHHHHH--hhcccccceEEEecCCCc
Confidence 99998875554 232 23455667777544
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.16 Score=45.54 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-------CCceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-------p~~~~a~v~~~p~~ 651 (771)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4455666666666643 47899999999999999887642 14566666666654
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.49 E-value=9.7 Score=42.59 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=53.9
Q ss_pred cCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 216 RQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.+..|.+|++++++...+. . ....+..+... +.. ++..+ + ...|-++|+
T Consensus 309 ~D~tVkVW~v~n~~~l~l~--~~h~~~V~~v~~~--~~~----lvsgs-------------~--d~~v~VW~~------- 358 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLL--RGHTGPVNCVQLD--EPL----LVSGS-------------Y--DGTVKVWDP------- 358 (537)
T ss_pred CCceEEEEeccCcceEEEe--ccccccEEEEEec--CCE----EEEEe-------------c--CceEEEEEh-------
Confidence 4589999999999887773 3 34455555554 443 44443 1 125666665
Q ss_pred hhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 295 SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 295 ~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..++ ...|+.+.+.+.+..+.+. ..++-.+.+ ..|.+||+.+.
T Consensus 359 ----------~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-----------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 359 ----------RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-----------TTIKVWDLRTK 402 (537)
T ss_pred ----------hhceeeeeecCCcceEEEEEecCc-ceEEeeeec-----------cceEeecCCch
Confidence 4444 3566666666776655443 444444433 23666666665
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=9.7 Score=38.15 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=59.3
Q ss_pred cCceEEEEEccCCce---eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 216 RQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+..+|-+.|+...+. ..+ ...+..+.-++.+-+|.. |+..+. ...-|.++|.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~----vATaSt--------------kGTLIRIFdt----- 211 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTL----VATAST--------------KGTLIRIFDT----- 211 (346)
T ss_pred ccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccE----EEEecc--------------CcEEEEEEEc-----
Confidence 347888999876655 455 455667888999999997 776652 2235677776
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCC--CccccceeecCCCCEEEEEecCC
Q 004149 293 EASELELKESSSEDLP-VVNLTES--ISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+|+ ...+..+ ...+...+||||+++|+..|...
T Consensus 212 ------------~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 212 ------------EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred ------------CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 4444 3334332 23477899999999999988764
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.28 E-value=7 Score=41.70 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCCCccccCCCEEEEEeeeC-----------------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 391 ILSNPWLSDGCTMLLSSIWG-----------------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~~~-----------------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
...+.|.|||+ ||++.... ....+++++.++++.+.+...........|+++|+. +++..
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCE-EEEcc
Confidence 45788999996 77655421 013699999998888877654333344678887654 44444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=10 Score=42.55 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeec---CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW---PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
.+...+.|+||.+++.+...+ | ..+|++.-+ ..|..+.++... .+. ......++
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~----g----~~~V~va~V~R~~~G~P~~L~~~~----~~~-----------~~~~~~sl 491 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQN----G----KSRVQVAGIVRNEDGTPRELTAPI----TLA-----------ADSDADTG 491 (573)
T ss_pred eeEEEEECCCccEEEEEEEeC----C----ccEEEEEEEEeCCCCCeEEccCce----ecc-----------cCCCccee
Confidence 488999999999999988654 2 234655333 223323332211 000 00134578
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.|..|+..++.....++....+.+.+..|..+.+.
T Consensus 492 ~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 492 AWVGDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred EEcCCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 89988875555554555666777777666555333
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.12 E-value=3.8 Score=43.68 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=43.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccee---eee--eeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~---~g~--~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
....+.|.|||+ |++..-...... .+. .........|++++. ++++.+.+...
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 456789999996 776432111000 000 000112357999997 67777777766
Q ss_pred CccccceeecCCCCEEEEEec
Q 004149 316 ISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~ 336 (771)
.......+|+|+|+. ++..+
T Consensus 183 ~rnp~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 183 FQNPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred cCCCccceECCCCCE-EEEcc
Confidence 666778999999974 44444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=2.8 Score=45.68 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=26.9
Q ss_pred cCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCC
Q 004149 216 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~ 253 (771)
++..+..||+++++..... .......+.+.+|.|+..-
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 3478889999988765441 1344557788999999884
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.88 E-value=5.4 Score=43.53 Aligned_cols=237 Identities=11% Similarity=0.096 Sum_probs=122.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+-.+.+.|---+++-.-.. + -..+|+ .....+.+++..- ++....|=+--.+|+..+++-..+
T Consensus 15 RVKsVd~HPtePw~la~Lyn--G---~V~IWnyetqtmVksfeV~~~---------PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYN--G---DVQIWNYETQTMVKSFEVSEV---------PVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred ceeeeecCCCCceEEEeeec--C---eeEEEecccceeeeeeeeccc---------chhhheeeeccceEEEecCCceEE
Confidence 45566777777666543332 2 244552 2223333333211 113444545455555555443322
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.+......+.+.+..+..+...+..-|...-.++...+-.|-+||.+.+= .+.. ......+.+++|.|....-
T Consensus 81 --Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~HyVMqv~fnPkD~nt- 155 (794)
T KOG0276|consen 81 --VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEHYVMQVAFNPKDPNT- 155 (794)
T ss_pred --EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcceEEEEEEecCCCccc-
Confidence 12222222333344455555444444433334444556677778877652 2333 3445578899999955430
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
.+-. |.++ .|-++.+. .......|..+...+..+.+=+-|.+=+.++
T Consensus 156 --FaS~-------------sLDr--TVKVWslg----------------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 156 --FASA-------------SLDR--TVKVWSLG----------------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred --eeee-------------eccc--cEEEEEcC----------------CCCCceeeeccccCcceEEeccCCCcceEEe
Confidence 3333 2334 34444441 2333456667777788888887776555555
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
..+ ...|.+||.++..-.+..++.. .++...+|.|.=. |+.+.+.+|..+|
T Consensus 203 gaD---------D~tiKvWDyQtk~CV~TLeGHt-------------------~Nvs~v~fhp~lp-iiisgsEDGTvri 253 (794)
T KOG0276|consen 203 GAD---------DLTIKVWDYQTKSCVQTLEGHT-------------------NNVSFVFFHPELP-IIISGSEDGTVRI 253 (794)
T ss_pred cCC---------CceEEEeecchHHHHHHhhccc-------------------ccceEEEecCCCc-EEEEecCCccEEE
Confidence 433 3457888888766544333321 1344555665543 6677777777777
Q ss_pred EE
Q 004149 416 IS 417 (771)
Q Consensus 416 ~~ 417 (771)
|.
T Consensus 254 Wh 255 (794)
T KOG0276|consen 254 WN 255 (794)
T ss_pred ec
Confidence 73
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.1 Score=48.79 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=89.8
Q ss_pred CCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc---eeeccCCCCCCccceEEE-ecCCCCCccEEEEEeecCc
Q 004149 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVW-APLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 191 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~w-spDg~~~~~~l~~~~~~~~ 266 (771)
..+.+..|..+.....+....+....+..+.+|+...+. ...| -.....+.-++. .++.. ++.++
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti--r~H~DYVkcla~~ak~~~-----lvaSg---- 136 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI--RTHKDYVKCLAYIAKNNE-----LVASG---- 136 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh--hcccchheeeeecccCce-----eEEec----
Confidence 444567788777777775555666678899999987663 1222 223335666666 55544 44443
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce------e-----cC-CCCccccceeecCCCCEEEEE
Q 004149 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV------N-----LT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~------~-----lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
.-..+|+++|+ +++..+ + +. .....+.+.+-.+.|..|+
T Consensus 137 ----------GLD~~IflWDi-----------------n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv-- 187 (735)
T KOG0308|consen 137 ----------GLDRKIFLWDI-----------------NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV-- 187 (735)
T ss_pred ----------CCCccEEEEEc-----------------cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE--
Confidence 12237888888 444221 1 11 1222355556666664332
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
+. +....|.+||-.+.+......+. ..++..+..++||.+++ +++.++..+
T Consensus 188 sG---------gtek~lr~wDprt~~kimkLrGH-------------------TdNVr~ll~~dDGt~~l-s~sSDgtIr 238 (735)
T KOG0308|consen 188 SG---------GTEKDLRLWDPRTCKKIMKLRGH-------------------TDNVRVLLVNDDGTRLL-SASSDGTIR 238 (735)
T ss_pred ec---------CcccceEEeccccccceeeeecc-------------------ccceEEEEEcCCCCeEe-ecCCCceEE
Confidence 21 12346888888776542111111 11344555788998875 555677888
Q ss_pred EEEEEC
Q 004149 415 IISVNV 420 (771)
Q Consensus 415 l~~~d~ 420 (771)
||-+..
T Consensus 239 lWdLgq 244 (735)
T KOG0308|consen 239 LWDLGQ 244 (735)
T ss_pred eeeccc
Confidence 886543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.74 Score=45.86 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=84.2
Q ss_pred cCceEEEEEccCCceeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 216 RQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
.+-.||-+..+++ .+.+. ....+......+|+-|-....-++|..+ ..+.|+++|+
T Consensus 64 ~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---------------~~GvIrVid~----- 122 (385)
T KOG1034|consen 64 NRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---------------YLGVIRVIDV----- 122 (385)
T ss_pred cEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---------------ceeEEEEEec-----
Confidence 4456666665553 22221 1112234456688887653222233322 3347999998
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 293 EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.+++ ...+..+.+.+...++-|+--+|+.....+ ..|.+|++++..-..+..+...
T Consensus 123 ------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~eg- 179 (385)
T KOG1034|consen 123 ------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEG- 179 (385)
T ss_pred ------------chhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEeccccc-
Confidence 5554 456777888899999999987777766554 3488888887665433322210
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
+...+-++.|+.||.+| ++..-+....+|+++
T Consensus 180 ---------------HrdeVLSvD~~~~gd~i-~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 180 ---------------HRDEVLSVDFSLDGDRI-ASCGMDHSLKLWRLN 211 (385)
T ss_pred ---------------ccCcEEEEEEcCCCCee-eccCCcceEEEEecC
Confidence 11134477899999965 344444555677665
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.82 E-value=4.1 Score=42.46 Aligned_cols=161 Identities=11% Similarity=0.143 Sum_probs=95.3
Q ss_pred ccccCCcCc-ccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 202 GDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 202 ~~~~~d~g~-~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
..|...|.. +.++.....+.+||+++|++... ++ ....+....|.|-.-. ++..+. ..
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s--~~~~~k~Vq~l~wh~~~p~----~LLsGs--------------~D 308 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS--ITHHGKKVQTLEWHPYEPS----VLLSGS--------------YD 308 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCccee--hhhcCCceeEEEecCCCce----EEEecc--------------cc
Confidence 446666543 34556678999999999999888 44 4557889999998776 555541 22
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..+.+.|.-. ....+..-+. .+.+....|.|-....+|.+.++ ..|+-+|+...
T Consensus 309 ~~V~l~D~R~-------------~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tdd----------G~v~~~D~R~~ 362 (463)
T KOG0270|consen 309 GTVALKDCRD-------------PSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDD----------GTVYYFDIRNP 362 (463)
T ss_pred ceEEeeeccC-------------ccccCceEEe---ccceEEEEecCCCceeEEEecCC----------ceEEeeecCCC
Confidence 3455555410 0012222221 23466778888777777777554 24777777554
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+. .+- .+. .+...+..+++++.-..++.+.+......||.++....+..
T Consensus 363 ~~-~vw-------t~~----------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 363 GK-PVW-------TLK----------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CC-cee-------EEE----------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 31 110 000 12223556666665566767766677778898877655433
|
|
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=3.3 Score=42.95 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=57.6
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
..+.+.+.+..|.++|..+.+++.+..++.|+.++.+-+.++.|..........+++.+.+|++..
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 457788889999999999999999999999999999999999998766666678899999999865
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.67 E-value=11 Score=37.19 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=67.0
Q ss_pred cCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC-ceeEEEecccccch
Q 004149 216 RQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP-CALYAVRVSLYKSE 293 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~~l~~~d~~~~~~~ 293 (771)
...++.+.|+++|..... ..+ ...+-.+.|||..++ +++++.-++.-|+ |+.-+. +-+..+|.
T Consensus 166 r~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~e~----vLatgsaDg~irl---WDiRrasgcf~~lD~------ 230 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSSEW----VLATGSADGAIRL---WDIRRASGCFRVLDQ------ 230 (397)
T ss_pred CCCcEEEEeccCCcceee--eccccCceEEEEeccCcee----EEEecCCCceEEE---EEeecccceeEEeec------
Confidence 347899999999987766 333 346778999999998 8887633221110 011111 12333443
Q ss_pred hhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 294 ASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
.++... +.-+.+.+.+.+.+|+.||.+++....++ ++.+|+...|...
T Consensus 231 ----------hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-----------r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 231 ----------HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-----------RIRVWNMESGRNT 281 (397)
T ss_pred ----------ccCccCccccccccccceeeeeeecccchhhhhccCcc-----------ceEEeecccCccc
Confidence 122221 11233455688999999999988766543 4677777666553
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.38 Score=50.60 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHH
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
...+.+++++|.+++.-++++|.|.|.|+||+.++..+.
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 567788999999986678899999999999999987654
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.28 Score=44.92 Aligned_cols=39 Identities=26% Similarity=0.183 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
..+...++..... ....+|.++|||+||.+|..++....
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444332 24578999999999999999887653
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.27 E-value=4.3 Score=40.22 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=53.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..--+||+++|++..+. +..+.......-.|..+ |+.++.++. ...++|+-
T Consensus 294 RTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQr-----LVvTsSrDt--------------TFRLWDFR--------- 344 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQR-----LVVTSSRDT--------------TFRLWDFR--------- 344 (481)
T ss_pred ccceeeeeccCceeccc-cCcchhccccccCCcce-----EEEEeccCc--------------eeEeccch---------
Confidence 45568999999987762 33344455566667655 776663332 23333431
Q ss_pred hhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 298 ELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 298 ~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+.- ....+..+...+.+..|.-|.+ ++-.+.+ ..+.+||+..
T Consensus 345 -------eaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrN 387 (481)
T KOG0300|consen 345 -------EAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRN 387 (481)
T ss_pred -------hhcceeeeecccccceeEEEEecCCc-eeecCCC-----------ceEEEeeecc
Confidence 111 2233344556688899988866 4444433 3477888764
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=92.21 E-value=20 Score=39.17 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=59.6
Q ss_pred ceEEEEEccCCceeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
-+-+++++..++++++. -++-...+...+++|+.++ ++... .++.|.++|.
T Consensus 236 ~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k----LvlGC---------------~DgSiiLyD~-------- 288 (545)
T PF11768_consen 236 ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK----LVLGC---------------EDGSIILYDT-------- 288 (545)
T ss_pred eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce----EEEEe---------------cCCeEEEEEc--------
Confidence 34566666666655542 1344445677899999998 77764 2347888885
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.. ..+.++...-.....+|.|||..++..+.+ .+|..+|.+-+
T Consensus 289 ---------~~-~~t~~~ka~~~P~~iaWHp~gai~~V~s~q-----------GelQ~FD~ALs 331 (545)
T PF11768_consen 289 ---------TR-GVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-----------GELQCFDMALS 331 (545)
T ss_pred ---------CC-CeeeeeeecccceEEEEcCCCcEEEEEcCC-----------ceEEEEEeecC
Confidence 22 334444444557788999999977666544 24667776543
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=11 Score=42.21 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=54.8
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.+.+|.||..+++... ...+++.. .++..+.+... .....|+|.++| .+..+.+.. ..
T Consensus 338 s~avS~dg~~~A~v~~---------~~~l~vg~---~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv~~g~---~~ 395 (557)
T PRK13615 338 AATLSADGRQAAVRNA---------SGVWSVGD---GDRDAVLLDTR------PGLVAPSLDAQG-YVWSTPASD---PR 395 (557)
T ss_pred cceEcCCCceEEEEcC---------CceEEEec---CCCcceeeccC------CccccCcCcCCC-CEEEEeCCC---ce
Confidence 4556778888888732 12344322 22233333222 346789999999 665544322 22
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
.+... ..|.... +..+... ++.+..+..|+||.++|.+.+.
T Consensus 396 ~l~~~~~~G~~~~-v~v~~~~------~~~I~~lrvSrDG~R~Avi~~~ 437 (557)
T PRK13615 396 GLVAWGPDGVGHP-VAVSWTA------TGRVVSLEVARDGARVLVQLET 437 (557)
T ss_pred EEEEecCCCceEE-eeccccC------CCeeEEEEeCCCccEEEEEEec
Confidence 33333 3344432 2333322 2234899999999999998764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.11 E-value=6.4 Score=42.59 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=60.9
Q ss_pred CccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 214 GKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 214 ~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+.....++++++.+|+++.-.-+.. ...+....|+.+-. .+|+. ....++..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-----ciyS~--------------~ad~~v~~~~~----- 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-----CIYSV--------------GADLKVVYILE----- 131 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-----ceEec--------------CCceeEEEEec-----
Confidence 4456789999999998766521121 22444555555444 33332 13335666665
Q ss_pred hhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 293 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
......+.-. ....+.+...||||+.|+..+ .+|.++|+++++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 132 ------------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEVV 177 (541)
T ss_pred ------------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceEE
Confidence 4444444332 233578899999999887655 35899999887753
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=8.4 Score=43.20 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=36.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
....++.|+||+.+|++.. ....++..+.++..+.+... ... ..++|+++| .+..+
T Consensus 344 ~~~s~avS~~g~~~A~~~~---~~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---SRTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecC---CCcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 4667899999999999833 23466666655544444432 222 589999998 45443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.91 E-value=13 Score=36.29 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=46.1
Q ss_pred CCCccccceeecCCCC-EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004149 314 ESISSAFFPRFSPDGK-FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~-~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
.+.+.++...|||-|- -|.|.+.. ...+++.|+.+....++.-- ..+..|. .-...+.
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEh----------fs~~hv~D~R~~~~~q~I~i----------~~d~~~~-~~tq~if 306 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEH----------FSRVHVVDTRNYVNHQVIVI----------PDDVERK-HNTQHIF 306 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecC----------cceEEEEEcccCceeeEEec----------Ccccccc-ccccccc
Confidence 4677899999998664 35666643 35688999887665332111 1111111 0001234
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004149 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 393 ~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.-+|+.++..+++.+. .+++-+++.+
T Consensus 307 gt~f~~~n~s~~v~~e----~~~ae~ni~s 332 (344)
T KOG4532|consen 307 GTNFNNENESNDVKNE----LQGAEYNILS 332 (344)
T ss_pred cccccCCCcccccccc----hhhheeeccc
Confidence 5567777777765443 3455555544
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.9 Score=43.74 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=48.7
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH-HHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004149 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
.|......+. ..+.|+.++++|.+. .. ......+++.. .++.+... ....++.++|||+||.++..
T Consensus 14 ~~~~~~~~l~-~~~~v~~~~~~g~~~---~~-------~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~ 80 (212)
T smart00824 14 EYARLAAALR-GRRDVSALPLPGFGP---GE-------PLPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHA 80 (212)
T ss_pred HHHHHHHhcC-CCccEEEecCCCCCC---CC-------CCCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHH
Confidence 4555666664 468999999988421 10 01112333332 22333332 23467899999999999988
Q ss_pred HHHh---CCCceeEEEecCC
Q 004149 633 LIGQ---APDKFVAAAARNP 649 (771)
Q Consensus 633 ~a~~---~p~~~~a~v~~~p 649 (771)
++.+ .+..+..+++..+
T Consensus 81 ~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 81 VAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHhCCCCCcEEEEEcc
Confidence 8775 3445666665543
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.64 E-value=4.1 Score=41.90 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=52.6
Q ss_pred eEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhh
Q 004149 219 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 298 (771)
.+.++....+..+.+ ...-....+++||||++. |++ +. |..+|++...+
T Consensus 133 ~~di~s~~~~~~~~~--lGhvSml~dVavS~D~~~----Iit-aD--------------RDEkIRvs~yp---------- 181 (390)
T KOG3914|consen 133 SFDILSADSGRCEPI--LGHVSMLLDVAVSPDDQF----IIT-AD--------------RDEKIRVSRYP---------- 181 (390)
T ss_pred eeeeecccccCcchh--hhhhhhhheeeecCCCCE----EEE-ec--------------CCceEEEEecC----------
Confidence 344444444666555 344456789999999985 554 43 44467766653
Q ss_pred hhcCCCCCCccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 299 LKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 299 ~~~~~~~~~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+.-.... ...+...+..+..-++ ..|+-.+ +...|++||+.+|..
T Consensus 182 ------a~f~IesfclGH~eFVS~isl~~~-~~LlS~s-----------GD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 182 ------ATFVIESFCLGHKEFVSTISLTDN-YLLLSGS-----------GDKTLRLWDITSGKL 227 (390)
T ss_pred ------cccchhhhccccHhheeeeeeccC-ceeeecC-----------CCCcEEEEecccCCc
Confidence 2222211 1223344566665543 3333222 245799999988775
|
|
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.6 Score=44.01 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+.| ||+.||-+............+.+.+ .|.-+..+. .|. +. ...+.....+.+..+.+.|.+.+..
T Consensus 26 ~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~------~~s~~~~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV------QDSLFMPLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc------ccccccCHHHHHHHHHHHHhcchhh-
Confidence 456 6677997644434466666666642 366555554 231 11 0111111233344444444443222
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p 649 (771)
.+-+-++|+|.||.+.-.++.+.|+ .++-.|..++
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 2358999999999999999998876 3666665543
|
|
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.36 Score=51.59 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=59.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH-----------------HHHHHHCCcEEEEECCCCCCCCChh
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-----------------LAFLSSVGYSLLIVNYRGSLGFGEE 583 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~-----------------~~~la~~G~~V~~~d~rG~~~~g~~ 583 (771)
+..|.+.++ ....++|+|+++.|||++......... ..-+... -.++-+|.+-.+||..+
T Consensus 87 ~ffy~fe~~--ndp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESP--NDPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCC--CCCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 555666653 256689999999999987532111100 0011111 35677776655556554
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHH
Q 004149 584 ALQSLPGKVGSQDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 584 ~~~~~~~~~~~~~~~D~~~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
-......+ ....-+|+..+.+.+.+ ... ...+.+|+|-|+||+-+..+|.
T Consensus 164 ~~~e~~~d-~~~~~~D~~~~~~~f~~~fp~~~r-~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 164 LGDEKKKD-FEGAGKDVYSFLRLFFDKFPHYAR-LLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred cccccccc-hhccchhHHHHHHHHHHHHHHHhh-hcCceeEeeccccchhhHHHHH
Confidence 11111111 11123455544444333 221 2247899999999998888775
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=11 Score=42.26 Aligned_cols=159 Identities=9% Similarity=-0.040 Sum_probs=86.6
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
..++.|+||+.+|++... ..+.+...+ ..+.+.. .... ..++|+++| .+..+.+..
T Consensus 337 ~s~avS~dg~~~A~v~~~-----~~l~vg~~~~~~~~~~~-~~~L----------t~PS~d~~g-~vWtv~~g~------ 393 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-----GVWSVGDGDRDAVLLDT-RPGL----------VAPSLDAQG-YVWSTPASD------ 393 (557)
T ss_pred ccceEcCCCceEEEEcCC-----ceEEEecCCCcceeecc-CCcc----------ccCcCcCCC-CEEEEeCCC------
Confidence 678999999999998431 245555333 3333322 1222 589999999 554432111
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
...+.... .+|+...+. .......+..+..|+||-+ ++
T Consensus 394 ------------------------------------~~~l~~~~-~~G~~~~v~v~~~~~~~I~~lrvSrDG~R----~A 432 (557)
T PRK13615 394 ------------------------------------PRGLVAWG-PDGVGHPVAVSWTATGRVVSLEVARDGAR----VL 432 (557)
T ss_pred ------------------------------------ceEEEEec-CCCceEEeeccccCCCeeEEEEeCCCccE----EE
Confidence 11122211 223333331 0112335788899999999 99
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-------CCCCccccceeecCCCCEEE
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-------t~~~~~~~~p~~SpDG~~l~ 332 (771)
++....+ ..+|++.-+-. .++..+.| ........+..|..|++ |+
T Consensus 433 vi~~~~g------------~~~V~va~V~R---------------~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~-la 484 (557)
T PRK13615 433 VQLETGA------------GPQLLVASIVR---------------DGGVPTSLTTTPLELLASPGTPLDATWVDELD-VA 484 (557)
T ss_pred EEEecCC------------CCEEEEEEEEe---------------CCCcceEeeeccEEcccCcCcceeeEEcCCCE-EE
Confidence 8863222 12455433310 12222333 33344778899999887 66
Q ss_pred EEecCCCCCCCCccccccceeeecCCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.+.... | ...+++++.+.+.
T Consensus 485 Vl~~~~----~---~~~~v~~v~v~g~ 504 (557)
T PRK13615 485 TLTLAP----D---GERQVELHQVGGP 504 (557)
T ss_pred EEeccC----C---CCceEEEEECCCc
Confidence 665432 1 2355777777643
|
|
| >PLN02517 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.35 Score=52.94 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=47.5
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC-CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004149 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~-~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
.|..+++.|++.||. -.+++|. .-+|+.... .+....-+..+...|+.+.+.. ..++|+|+||||||.++++
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHH
Confidence 356789999999997 4566663 334443211 0111112345566666665442 2579999999999999998
Q ss_pred HHH
Q 004149 633 LIG 635 (771)
Q Consensus 633 ~a~ 635 (771)
++.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 775
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=91.23 E-value=2.6 Score=41.61 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=72.1
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEE--EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~--wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+|..+|+.+|+...-..... ...... -.++++. +++.. ....|+.+|+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~----v~~~~---------------~~~~l~~~d~-------- 53 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGR----VYVAS---------------GDGNLYALDA-------- 53 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTE----EEEEE---------------TTSEEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCE----EEEEc---------------CCCEEEEEEC--------
Confidence 678899998887654421211 123333 3446664 54442 3348999997
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
.+|+...-.........+. ..++..|++...+ ..|+.+|..+|+..-. ..
T Consensus 54 ---------~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~-----------~~l~~~d~~tG~~~W~---------~~ 103 (238)
T PF13360_consen 54 ---------KTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD-----------GSLYALDAKTGKVLWS---------IY 103 (238)
T ss_dssp ---------TTSEEEEEEECSSCGGSGE-EEETTEEEEEETT-----------SEEEEEETTTSCEEEE---------EE
T ss_pred ---------CCCCEEEEeecccccccee-eecccccccccce-----------eeeEecccCCcceeee---------ec
Confidence 6666432222222222222 3445556665532 2699999888775211 00
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
.... .... .........++..+++... ...|+.+|+++|++.
T Consensus 104 ~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 104 LTSS-PPAG-----VRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLL 145 (238)
T ss_dssp E-SS-CTCS-----TB--SEEEEETTEEEEEET---CSEEEEEETTTTEEE
T ss_pred cccc-cccc-----cccccCceEecCEEEEEec---cCcEEEEecCCCcEE
Confidence 0000 0000 0112223334666766543 467999999999874
|
... |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=12 Score=42.51 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=49.2
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+...+.|+||.+++.+.... | ..+|++--+. ..+.+.++.-. .+.. . .....++.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~----g----~~~v~va~V~R~~~G~~~l~~~~-~l~~---~----------l~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD----G----RRSLQIGRIVRDAKAVVSVEEFR-SLAP---E----------LEDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC----C----CcEEEEEEEEeCCCCcEEeeccE-Eecc---C----------CCccceeE
Confidence 688999999999999998653 1 2345544332 12212221111 1100 0 01245788
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 004149 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGEL 425 (771)
Q Consensus 396 ~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 425 (771)
|..++..++......+...+|.+++++...
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 998887444344444566789999875544
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.88 E-value=18 Score=42.45 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=40.9
Q ss_pred CccccCCC-EEEEEeeeCC-eeEEEEEECCCC-cEEEecCCCCCc-eeeEEeecCCEEEEEEeCC-CCCCeEEEEEecc
Q 004149 394 NPWLSDGC-TMLLSSIWGS-SQVIISVNVSSG-ELLRITPAESNF-SWSLLTLDGDNIIAVSSSP-VDVPQVKYGYFVD 467 (771)
Q Consensus 394 ~~~s~dg~-~l~~~~~~~~-~~~l~~~d~~tg-~~~~l~~~~~~~-~~~~~s~d~~~l~~~~s~~-~~p~~l~~~~~~~ 467 (771)
+.++.|+. .+++.....+ ..++..+....+ ....++.+...+ ....++.+.+.++|.+... -+-..+|.+++..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~ 423 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGS 423 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccc
Confidence 45666764 3333333344 566777776666 556666554422 2334456778888877654 3334456555543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.85 E-value=25 Score=37.36 Aligned_cols=165 Identities=16% Similarity=0.159 Sum_probs=86.6
Q ss_pred ceEEEEEccC--CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..+.+|++.+ .....+ ......+..+.|+|+++. ++..+. ....+..+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~-------- 185 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKL----LASGSS--------------LDGTIKLWDL-------- 185 (466)
T ss_pred ccEEEEEecCCCeEEEEE--ecCcccEEEEEECCCCCE----EEecCC--------------CCCceEEEEc--------
Confidence 5788888876 344444 334445668999999986 655531 1235777776
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+ ....+..+...+....|+|+|+.++.....+ ..|..||...+..... .
T Consensus 186 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----------~~i~~wd~~~~~~~~~---------~ 237 (466)
T COG2319 186 ---------RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD----------GTIRLWDLSTGKLLRS---------T 237 (466)
T ss_pred ---------CCCceEEeeccCCCceEEEEEcCCcceEEEEecCC----------CcEEEEECCCCcEEee---------e
Confidence 332 3344444566788899999998333331221 2344556553222110 0
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEE
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 449 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~ 449 (771)
+... . ... ...|++++..+ +....++...+|.+.........+......+....+.+++..++.
T Consensus 238 ~~~~--------~-~~~-~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 238 LSGH--------S-DSV-VSSFSPDGSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred cCCC--------C-cce-eEeECCCCCEE-EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 0000 0 000 11689999544 455556666666554322212333122223444567776776666
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=90.65 E-value=7.3 Score=39.12 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=67.6
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....|+++|+.+++...-. ......+..+.+.|+..+ |+..+.. +..|.++++
T Consensus 113 ~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~q----lvls~Sk--------------D~svRlwnI-------- 165 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQ----LVLSASK--------------DHSVRLWNI-------- 165 (385)
T ss_pred ceeEEEEEecchhhhccce-eccCccchhhhcCCCCCc----EEEEecC--------------CceEEEEec--------
Confidence 4589999999888754331 344557888899999988 7776632 235777776
Q ss_pred hhhhhcCCCCCCcceecCC----CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 296 ELELKESSSEDLPVVNLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~----~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+..+..+.. +...+.+..||+||.+|+-...+. +|.+|++...+
T Consensus 166 ---------~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-----------slk~W~l~~~~ 214 (385)
T KOG1034|consen 166 ---------QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-----------SLKLWRLNVKE 214 (385)
T ss_pred ---------cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc-----------eEEEEecChhH
Confidence 5566655543 344688999999999888666553 46666666433
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.72 Score=48.72 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~ 651 (771)
.+++...++.+++...-..-+|.+.|||+||.+|+.+|... ...+.+++..+|-+
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPRV 271 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQV 271 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCcc
Confidence 56777888888776432223599999999999999887531 11245666677754
|
|
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=90.52 E-value=2.4 Score=42.85 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=58.0
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+.| +|+.||-+............+.+.+ -|.-|.++.. |.+ . ...+.....+.+..+.+.|.+.+..
T Consensus 25 ~~P-~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g~~-----~----~~s~~~~~~~Qve~vce~l~~~~~l- 92 (314)
T PLN02633 25 SVP-FIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-GNG-----V----GDSWLMPLTQQAEIACEKVKQMKEL- 92 (314)
T ss_pred CCC-eEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-CCC-----c----cccceeCHHHHHHHHHHHHhhchhh-
Confidence 456 5667996655444455555666644 2555655543 211 1 1112122233333444444443222
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p 649 (771)
.+-+-++|+|.||.++-.++.+.|+ .++..|..++
T Consensus 93 ~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 93 SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 2358999999999999999998876 3677766554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=90.43 E-value=6.8 Score=42.70 Aligned_cols=146 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+.+|.++.+.+++.+.+.-.-.+..+-.+.||-...+ .+++-...-..+.. ...+-.+++.
T Consensus 182 draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~----qi~tVE~s~s~~g~------~~~d~ciYE~-------- 243 (545)
T PF11768_consen 182 DRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPY----QIHTVEQSISVKGE------PSADSCIYEC-------- 243 (545)
T ss_pred hhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCc----EEEEEEEecCCCCC------ceeEEEEEEe--------
Confidence 45688888888887777621222334556778864444 44443211111000 0012222222
Q ss_pred hhhhhcCCCCCCcceecC----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 296 ELELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
...+.+++. .-...+...++||+.++|+..-.+. .|.++|...+..+.. ..
T Consensus 244 ---------~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg-----------SiiLyD~~~~~t~~~-ka---- 298 (545)
T PF11768_consen 244 ---------SRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG-----------SIILYDTTRGVTLLA-KA---- 298 (545)
T ss_pred ---------ecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC-----------eEEEEEcCCCeeeee-ee----
Confidence 112222221 1234577889999999998877663 488888765433211 00
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
.| .+..++|+|||. +++..+..|...+|-+-+.
T Consensus 299 ----------~~------~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 ----------EF------IPTLIAWHPDGA-IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ----------cc------cceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence 11 135678999997 5555565666666644443
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.53 Score=46.44 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-----CCceeEEEecCCcc
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLC 651 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~ 651 (771)
+++...+..+.++. ...+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 34445555444442 356899999999999999877642 33466666666654
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.8 Score=45.80 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=86.1
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
-.+.|..+..+.+||+++|++.... +..-..+-.+.|+- .. ++..+. ++...+|.++.
T Consensus 249 viisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n--g~----mvtcSk-------------DrsiaVWdm~s-- 306 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN--GY----MVTCSK-------------DRSIAVWDMAS-- 306 (499)
T ss_pred EEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC--CE----EEEecC-------------CceeEEEeccC--
Confidence 4456778899999999999876552 23333455667762 22 454441 23234555543
Q ss_pred ccchhhhhhhhcCCCCCC-cc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004149 290 YKSEASELELKESSSEDL-PV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~-~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+. .+ +.|..+...+..+.|+ .|+|+..+.+. .|.+|+..+.+..+...+
T Consensus 307 ---------------ps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-----------TikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 307 ---------------PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-----------TIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred ---------------chHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-----------eEEEEeccceeeehhhhc
Confidence 111 12 3455566667777774 57888777554 488899888776443322
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
. -.|+ .+.--.|+ ++++.+.+...+|| |+..|..-++..+..
T Consensus 359 H--------------kRGI-------AClQYr~r-lvVSGSSDntIRlw--di~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 H--------------KRGI-------ACLQYRDR-LVVSGSSDNTIRLW--DIECGACLRVLEGHE 400 (499)
T ss_pred c--------------cccc-------eehhccCe-EEEecCCCceEEEE--eccccHHHHHHhchH
Confidence 2 1111 12222454 77777767776776 566777666655443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=5.8 Score=40.53 Aligned_cols=161 Identities=11% Similarity=0.165 Sum_probs=86.4
Q ss_pred ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004149 229 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
++..+.+.+....+..++|...++ .+|.+- +..++...|+ ++.+
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~-----~~~SG~--------------~~~~VI~HDi-----------------Et~q 138 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENR-----FLYSGE--------------RWGTVIKHDI-----------------ETKQ 138 (609)
T ss_pred CCceeccCccccceEEEEEccCCe-----eEecCC--------------CcceeEeeec-----------------ccce
Confidence 344443344445666777765444 556551 3346777777 5555
Q ss_pred ceecCCCC---ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004149 309 VVNLTESI---SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 309 ~~~lt~~~---~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
...+..+. +.+.....+|-.+.++..+... .+.+||...... .+ ..+. +.
T Consensus 139 si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~-----------~V~~~D~Rd~~~-~~-------~~~~--------~A 191 (609)
T KOG4227|consen 139 SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAK-----------LVSFIDNRDRQN-PI-------SLVL--------PA 191 (609)
T ss_pred eeeeecccCcccceeecccCCCCceEEEEecCc-----------eEEEEeccCCCC-CC-------ceee--------ec
Confidence 54444333 2566667777777666655442 245566433221 00 0000 11
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE------ecCCCCCceeeEEeecCCEEEEEEe
Q 004149 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR------ITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 386 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~------l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
.|.....+..|.|---.|+++.+..+...||-+......+.+ |...........|++.|.+++.++.
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 122234566788887788888877777778866543322221 1111111233578999998887764
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.3 Score=44.23 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCCcEEEEEcCCCCCCCCC-cchHHHHHHH--HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH-HHHHHHHHc
Q 004149 535 SCDPLIVVLHGGPHSVSLS-SYSKSLAFLS--SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL-TAIDHVIDM 610 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~-~~~~~~~~la--~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~-~~i~~l~~~ 610 (771)
...| ||+.||-+...... ........+. --|.-|.+++.-. + ...+..+...+ .+.+.. .+.+.+.+.
T Consensus 4 ~~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~-~-~~~D~~~s~f~-----~v~~Qv~~vc~~l~~~ 75 (279)
T PF02089_consen 4 SPLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN-D-PSEDVENSFFG-----NVNDQVEQVCEQLAND 75 (279)
T ss_dssp SS---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS-S-HHHHHHHHHHS-----HHHHHHHHHHHHHHH-
T ss_pred CCCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC-C-cchhhhhhHHH-----HHHHHHHHHHHHHhhC
Confidence 3445 67789966443222 3333333322 2477777776421 1 00011111111 122322 233334333
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCC-ceeEEEecCC
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 649 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p 649 (771)
+... +-+-++|+|.||.+.-.++.+.++ .++-.|..++
T Consensus 76 p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 76 PELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred hhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 3232 468999999999999999988764 4677776554
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.7 Score=46.87 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEec-CCccchh----hhhcCCCCCcchh-hh
Q 004149 597 VNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLA----LMVGTTDIPDWCY-VE 669 (771)
Q Consensus 597 ~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~----~~~~~~~~~~~~~-~~ 669 (771)
+..+..|++-.... ..+.-++..|.|.|--|+.+...|...|+ +.++|.. .-..+.. .++.. ....|-. ..
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrs-YGgnwpi~l~ 291 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRS-YGGNWPIKLA 291 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHh-hCCCCCcccc
Confidence 34455555544332 22566789999999999999888877664 3333321 1111111 00000 0001100 00
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccc-----cCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHI-----SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-----~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.|-..+...... .+.....+.-.+|+.+. .++..|-+|+.+..|...+++.+..++..|... .-+.+.|+
T Consensus 292 pyyaegi~erl~--tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~---kaLrmvPN 366 (507)
T COG4287 292 PYYAEGIDERLE--TPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPGE---KALRMVPN 366 (507)
T ss_pred hhHhhhHHHhhc--CHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCCc---eeeeeCCC
Confidence 000000000111 11122223334566554 677899999999999999999999999998753 56789999
Q ss_pred CCccCC
Q 004149 745 DVHGIE 750 (771)
Q Consensus 745 ~~H~~~ 750 (771)
..|...
T Consensus 367 ~~H~~~ 372 (507)
T COG4287 367 DPHNLI 372 (507)
T ss_pred Ccchhh
Confidence 999765
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.5 Score=35.44 Aligned_cols=72 Identities=8% Similarity=-0.053 Sum_probs=0.0
Q ss_pred CccccCCCEEEEEe---------------eeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCC
Q 004149 394 NPWLSDGCTMLLSS---------------IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 394 ~~~s~dg~~l~~~~---------------~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~ 458 (771)
+...+|+..|||+. ......+|+++|+.|++.+.|..+-......++++|+..++++. +...
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E---t~~~ 79 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE---TGRY 79 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE---GGGT
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe---ccCc
Q ss_pred eEEEEEeccc
Q 004149 459 QVKYGYFVDK 468 (771)
Q Consensus 459 ~l~~~~~~~~ 468 (771)
+|.++.+...
T Consensus 80 Ri~rywl~Gp 89 (89)
T PF03088_consen 80 RILRYWLKGP 89 (89)
T ss_dssp EEEEEESSST
T ss_pred eEEEEEEeCC
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.07 E-value=15 Score=40.86 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=73.5
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeecc-CCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
...+.|+-.+.+-.+..|.++|+++|+.++.- +..+ +...-.+..-|.|-+ |+.. |.++
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY----~atS-------------csdk-- 663 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY----LATS-------------CSDK-- 663 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE----EEEe-------------ecCC--
Confidence 34555665555666678999999999887772 1111 122334556666654 4443 4443
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
.|..+|. -+|++ .+++.+...+....|++|-|.|+-.+.+. -||+|-+..
T Consensus 664 tl~~~Df-----------------~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg-----------CIFvW~lp~ 714 (1080)
T KOG1408|consen 664 TLCFVDF-----------------VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG-----------CIFVWKLPL 714 (1080)
T ss_pred ceEEEEe-----------------ccchhhhhhcCcchheeeeeecccchhheeecCCc-----------eEEEEECch
Confidence 7888888 67775 56777777899999999999999888653 377776644
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.03 E-value=10 Score=39.34 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=80.3
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC----ccceEEEecCCCCCccEEEEEeecCc--ce-eeeee
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL----SVGQVVWAPLNEGLHQYLVFVGWSSE--TR-KLGIK 273 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~----~~~~~~wspDg~~~~~~l~~~~~~~~--~~-~~g~~ 273 (771)
-..|....|+.++....--|+.++.+++..+.+. .+.+. -..++...++|. |+|+..... .+ -.-..
T Consensus 119 Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~-~~~~G~~~kf~N~ldI~~~g~-----vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 119 GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLA-DEAEGKPFKFLNDLDIDPEGV-----VYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred eEEeccCCCeEEEEecceeeEEECCCCCcceecc-ccccCeeeeecCceeEcCCCe-----EEEeccccccchhheEEee
Confidence 3456666667777777888888898998877773 11111 234667777554 677543221 11 11112
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004149 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
.+.....+++.+|. .+...+.|.+.-......+.|||++.++|..... .+|.+
T Consensus 193 l~g~~~GRl~~YD~-----------------~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~----------~ri~r 245 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDP-----------------STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT----------ARIKR 245 (376)
T ss_pred ecCCCccceEEecC-----------------cccchhhhhhcccccccccCCCCCCEEEEEeecc----------ceeee
Confidence 23345568889986 6677777777777788899999999999887543 45666
Q ss_pred eecCCC
Q 004149 354 IDWPTN 359 (771)
Q Consensus 354 ~d~~~~ 359 (771)
+-+++.
T Consensus 246 ywi~g~ 251 (376)
T KOG1520|consen 246 YWIKGP 251 (376)
T ss_pred eEecCC
Confidence 665543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.98 E-value=4.4 Score=42.52 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=52.9
Q ss_pred cCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 216 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.++.|.+|.+......... -.|+ .+..++=+|+|.. |+-.+ -...||++.+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg--~v~al~s~n~G~~----l~ag~---------------i~g~lYlWel------- 110 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPG--PVHALASSNLGYF----LLAGT---------------ISGNLYLWEL------- 110 (476)
T ss_pred cCccccccccCchhhhhhhccccc--ceeeeecCCCceE----EEeec---------------ccCcEEEEEe-------
Confidence 4567777776543321110 0222 2445667888875 54432 1227888888
Q ss_pred hhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCC
Q 004149 295 SELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+|.. ..+..+-..+...+||-||+.|+..+++.
T Consensus 111 ----------ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 111 ----------SSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ----------ccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 66664 55556666788999999999887766663
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.9 Score=41.81 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=62.0
Q ss_pred ccccCCcCcccCCccCceEEEEEcc--CCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004149 202 GDWEEDWGETYAGKRQPSLFVININ--SGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~--~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
..|...-..+..+.....|..+.++ ++..+.- +-.-.+-++..+..-||+|- ++..+|++.
T Consensus 211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI----lATAGWD~R------------ 274 (323)
T KOG0322|consen 211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI----LATAGWDHR------------ 274 (323)
T ss_pred eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE----EeecccCCc------------
Confidence 3344333344444444555555543 3432111 00122335678899999997 777777543
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 279 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+||.+. ....+-.|+-+...+...+||||..-+|-.+.+.
T Consensus 275 -iRVyswr------------------tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 275 -IRVYSWR------------------TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred -EEEEEec------------------cCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 2567665 3445666777788899999999988777666553
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.71 E-value=34 Score=35.79 Aligned_cols=146 Identities=15% Similarity=0.160 Sum_probs=77.5
Q ss_pred eEEEeCCCCCeEEEEecCC---CCCCeEEEEecCCcceEEEecCCcc----c--ccccCCCcccceeecCCCCeEEEEec
Q 004149 102 SAVVPSPSGSKLLVVRNPE---NESPIQFELWSQSQLEKEFHVPQTV----H--GSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~--g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
...++.++|... +..+.. .....|+.+...|...+.+.++... . ...-.+..|.+++++|||+.|+.+.+
T Consensus 88 Egi~~~~~g~~~-is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFW-ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEE-EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 345666777544 333322 1126788888556665544443322 1 23345567889999999998887766
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc------eeeccCCC---CCCccc
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE------VQAVKGIP---KSLSVG 243 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~------~~~l~~~~---~~~~~~ 243 (771)
....... . ...........|+.+|..+.. ..++...+ ....+.
T Consensus 167 ~~l~~d~----------~------------------~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~is 218 (326)
T PF13449_consen 167 SPLKQDG----------P------------------RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGIS 218 (326)
T ss_pred ccccCCC----------c------------------ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCce
Confidence 5421100 0 000001123567777776522 11221000 456788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
.+.+-+|++- |+.-..... + .....+||.+++.
T Consensus 219 d~~al~d~~l----LvLER~~~~----~----~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 219 DIAALPDGRL----LVLERDFSP----G----TGNYKRIYRVDLS 251 (326)
T ss_pred eEEEECCCcE----EEEEccCCC----C----ccceEEEEEEEcc
Confidence 9999999985 554321111 0 1233489999973
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 771 | ||||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 1e-12 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 1e-12 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 2e-12 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-12 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 1e-11 | ||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 2e-11 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 2e-11 | ||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 1e-10 | ||
| 2z3w_A | 706 | Prolyl Tripeptidyl Aminopeptidase Mutant E636a Leng | 2e-09 | ||
| 2d5l_A | 706 | Crystal Structure Of Prolyl Tripeptidyl Aminopeptid | 3e-09 | ||
| 2dcm_A | 706 | The Crystal Structure Of S603a Mutated Prolyl Tripe | 6e-09 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 6e-09 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 7e-09 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 4e-08 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 6e-08 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 6e-08 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 6e-08 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 6e-08 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 6e-08 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 6e-08 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 6e-08 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 6e-08 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 6e-08 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 7e-08 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 7e-08 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 7e-08 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 7e-08 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 7e-08 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 7e-08 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 7e-08 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 8e-08 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 2e-07 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 5e-06 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 1e-04 |
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Length = 706 | Back alignment and structure |
|
| >pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase From Porphyromonas Gingivalis Length = 706 | Back alignment and structure |
|
| >pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl Aminopeptidase Complexed With Substrate Length = 706 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 771 | |||
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 1e-66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 4e-63 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 2e-35 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-32 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 1e-28 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 5e-26 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 4e-21 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 2e-19 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 9e-19 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 1e-18 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-18 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 2e-18 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 1e-17 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-17 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 9e-17 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 1e-16 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 2e-16 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 2e-16 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 3e-16 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 4e-16 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 7e-16 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 1e-14 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 6e-14 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 1e-13 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-12 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 2e-12 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 2e-12 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 6e-11 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 6e-11 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 8e-10 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 5e-09 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 7e-09 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 5e-08 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 1e-07 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-05 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 3e-06 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 4e-06 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 5e-06 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 6e-06 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 6e-06 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 8e-06 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 1e-05 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 2e-05 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 4e-05 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 1e-04 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 1e-04 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 1e-04 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 2e-04 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 2e-04 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 2e-04 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 2e-04 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 3e-04 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 3e-04 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 4e-04 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 6e-04 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 6e-04 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 6e-04 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 7e-04 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 7e-04 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 9e-04 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 9e-04 |
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 1e-66
Identities = 105/681 (15%), Positives = 205/681 (30%), Gaps = 138/681 (20%)
Query: 103 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS 162
++ G KLLVV E L+ + K P
Sbjct: 26 SLQGVVDGDKLLVVGFSEGSVNAY--LYDGGETVKLNREPINSVL----------DPHYG 73
Query: 163 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ--GDWEED-WGETYAGKRQPS 219
+I + +T ++ + K + + G +
Sbjct: 74 VGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDR 133
Query: 220 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279
+ + ++ G ++ ++ P FV G+ +
Sbjct: 134 VALYALDGGGLR------------ELARLP-------GFGFVSDIRGDLIAGLGFFGGGR 174
Query: 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339
+L+ + + L + S SP K L
Sbjct: 175 VSLFTSNL-----SSGGLRV------------FDSGEGSFSSASISPGMKVTAGLE---- 213
Query: 340 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 399
+ L +D + ++ D F ++I +L D
Sbjct: 214 -----TAREARLVTVDPRDGS-----------VEDLELPSKD-FSSYRPTAITWLGYLPD 256
Query: 400 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 459
G +++ G S V I GE + + + L ++ +S P+
Sbjct: 257 GRLAVVARREGRSAVFID-----GERVEAPQG----NHGRVVLWRGKLVTSHTSLSTPPR 307
Query: 460 VKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-IPVKG-----VSANL 513
+ + L P R + + + V+ V +
Sbjct: 308 I---VSLPSGEP----LLEGGLP----------EDLRRSIAGSRLVWVESFDGSRVPTYV 350
Query: 514 TK--GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI 571
+ A P P +V++HGGP + S+ A L++ G+ +++
Sbjct: 351 LESGRAPTPG----------------PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVM 394
Query: 572 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 631
NYRGS G+GEE + G ++ DV A + GLA+ ++ ++G S+GG++T
Sbjct: 395 PNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTL 452
Query: 632 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES-YGSKGKDSFTESPSVEDLTR 690
+ P F A A + + M +D ++E G
Sbjct: 453 CALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG-------------GSREI 499
Query: 691 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750
S+SPI+H+ ++K P + R P+ L+ L +G + + P+ H I
Sbjct: 500 MRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAIN 559
Query: 751 RPQSDFESFLNIGLWFKKYCK 771
+ + L + +
Sbjct: 560 TMEDAVKILLPAVFFLATQRE 580
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 4e-63
Identities = 110/690 (15%), Positives = 223/690 (32%), Gaps = 111/690 (16%)
Query: 106 PSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH---GSVYADGWFEGI---- 158
P+ +G LV R + +S L ++V V G +A
Sbjct: 43 PAEAGRATLVRRRADGAE--------ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94
Query: 159 --SWNSDETLIAYVAEEPSPSKPT--FSLGSTKGGSSDKDCNSWKGQGDW----EEDWGE 210
+ D+ L A+ + P + P + + GG D + E++
Sbjct: 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADP-VLLPERGEVWCMAEEFTG 153
Query: 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLS-----VGQVVWAPLNEGLHQYLVFVGWSS 265
+ L + ++ + + V +P +G + V++ W
Sbjct: 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DG--RQAVWLAWDH 209
Query: 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFS 325
P ++ + + + + + ++
Sbjct: 210 P----------RMPWEGTELKTARVTEDGRFADTRTLLGGPE---------EAIAQAEWA 250
Query: 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385
PDG L+ + D + +LHR+D T + + E P
Sbjct: 251 PDGS-LIVAT-----D---RTGWWNLHRVDPATG----------AATQLCRREEEFAGPL 291
Query: 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 445
P ++ + V+ ++ SGEL+ + ++ +L T+ G
Sbjct: 292 WTPGMRWFAP---LANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATL-TVSGT 347
Query: 446 NIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-I 504
+ V++SP +V +D + + + + +
Sbjct: 348 RAVGVAASPRTAYEV---VELDTVTGRARTIGARHTD----------PVDPAYYPEPQIR 394
Query: 505 PVKG-----VSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL 559
+ A++ P F + + P +V+ HGGP S + +
Sbjct: 395 TFTAPDGREIHAHIYP----PHSPDFTGPADELP----PYVVMAHGGPTSRVPAVLDLDV 446
Query: 560 AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619
A+ +S G + VNY GS G+G + L G+ G DV D + + G A+ +++
Sbjct: 447 AYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLA 506
Query: 620 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 679
V GGS GG+ + D + P+ +L D+ S+ D
Sbjct: 507 VRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGT-HDF------ESRYLDFL 558
Query: 680 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739
S E R+ ++P++ +V+ P + L G +D P ++ A+ GV
Sbjct: 559 IGSFE-EFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAY 617
Query: 740 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
+ F + HG R ++ + + +
Sbjct: 618 LSFEGEGHGFRRKETMVRALEAELSLYAQV 647
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 27/248 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 594 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 703
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYF---DIMNLADRV 257
Query: 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763
K P + +G D P S L + ++ V+ H
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHLE---TKKELKVYRYFGHEYIPAFQT-----EKL 309
Query: 764 LWFKKYCK 771
+FK+ K
Sbjct: 310 AFFKQILK 317
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 20/232 (8%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P ++ +HG S S +G + + RG G+ +Q++
Sbjct: 29 PGVLFVHGWGGSQHHSLVR--AREAVGLGCICMTFDLRGHEGYASMRQSV----TRAQNL 82
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
+D+ A D + + + + VVG S+GG+L+ P+ LAL
Sbjct: 83 DDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSA-----------LLTRERPVEWLALRS 131
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
+ + S D ++ ++ K + + D+
Sbjct: 132 PALYKDAH-WDQPKVSLNADPDLMDYR-RRALAPGDNLALAACAQYKGDVLLVEAENDVI 189
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
VP YA A V H + + E + W +
Sbjct: 190 VPHPVMRNYADAFT-NARSLTSRVIAGADHALSVKEHQQEYTRALIDWLTEM 240
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-28
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
P ++ HG + + + + G++++ ++ RG G ++ +
Sbjct: 109 PALIRFHGYSSNSGDWNDKLNYV---AAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHII 165
Query: 594 ------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF 641
D V++M + +V V+G S GG L+ P
Sbjct: 166 RGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVR 225
Query: 642 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 701
+ L + + + + + D E + E T+ +
Sbjct: 226 KVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHEREN-EVFTKLGYIDVKNLAK 284
Query: 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755
++K + +G D P S +A A + + V+P+ H R D
Sbjct: 285 RIKGDVLMCVGLMDQVCPPS--TVFA-AYNNIQSKKDIKVYPDYGHEPMRGFGD 335
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 32/241 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-------------------- 577
P +V G + F S+GY +++ RG
Sbjct: 96 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 152
Query: 578 -LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 153 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 212
Query: 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696
+ LC+ V D + + ++ +D
Sbjct: 213 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRD-----KEEIVFRTLSYFDG 267
Query: 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756
++ ++ K P +F +G D P S +A A ++ ++P + H
Sbjct: 268 VNFAARAKIPALFSVGLMDNICPPS--TVFA-AYNYYAGPKEIRIYPYNNHEGGGSFQAV 324
Query: 757 E 757
E
Sbjct: 325 E 325
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 96.0 bits (238), Expect = 4e-21
Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 17/223 (7%)
Query: 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
P IV + G + + L+ G++++ + Y LP + +
Sbjct: 172 GPFPGIVDMFGTGGGLL----EYRASLLAGKGFAVMALAYYNYED--------LPKTMET 219
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+ A+++++ V ++G S GG L + A + N+
Sbjct: 220 LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVG 279
Query: 655 LMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 711
+ G T P + + + + ++ +FL+
Sbjct: 280 GTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLV 339
Query: 712 GAQDLRVPVSNGLQYA-RALREKGVE-TKVIVFPNDVHGIERP 752
G D A + L+ G ++I +P H IE P
Sbjct: 340 GQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEPP 382
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 2e-19
Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 17/222 (7%)
Query: 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
P I+ + G + + L+ G++ L + Y LP + +
Sbjct: 157 PFPGIIDIFGIGGGLL----EYRASLLAGHGFATLALAYYNFED--------LPNNMDNI 204
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-- 653
+ A+ +++ + ++G S G + + + + +
Sbjct: 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNT 264
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-EDLTRFHSKSPISHISKVKTPTIFLLG 712
A+ + IP Y + + L + + I K + P + ++G
Sbjct: 265 AINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVG 324
Query: 713 AQDLRVPVS-NGLQYARALREKGVET-KVIVFPNDVHGIERP 752
D + L+ G E ++I +P H IE P
Sbjct: 325 QDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEPP 366
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 9e-19
Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 34/247 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
++V+ GG S + Y++L+V+ G G+ Q L +V ++
Sbjct: 160 DTLIVVGGGDTSRE-DLFYMLGYSGWEHDYNVLMVDLPG---QGKNPNQGLHFEVDARAA 215
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL---- 653
I ++D A K+ + G S GG+ T + + A A P+ ++
Sbjct: 216 ------ISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKR-IKAWIASTPIYDVAEVF 268
Query: 654 -ALMVGTTDIPDWCYVESYGSKGKDS-------------FTESPSVEDLTRFHSKSPISH 699
P + F + + + ++ I
Sbjct: 269 RISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVD 328
Query: 700 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 759
+K+ P++FL+GA + + +++G++ + F ++ Q +
Sbjct: 329 YNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVN---- 384
Query: 760 LNIGLWF 766
N L
Sbjct: 385 -NFRLMH 390
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-18
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 58/351 (16%)
Query: 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 476
+++ G+ +TP L DG II + SP VP+ V KG+ +
Sbjct: 386 CIDIKGGKTKDLTPESGMHRTQLSP-DGSAIIDIFQSP-TVPRKVT---VTNIGKGSHTL 440
Query: 477 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCS 535
L +P + + + + P F + KK
Sbjct: 441 LEAKNPDTGYA------MPEIRTGTIMAADGQTPLY---YKLTMPLH--FDPA--KKY-- 485
Query: 536 CDPLIVVLHGGPHSVS-LSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590
P+IV ++GGPH+ ++ S+ +++ GY++ V+ RGS G Q +
Sbjct: 486 --PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHR 543
Query: 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650
++G ++ D + +D + + ++ V G S+GGF+TT+L+ D F A P
Sbjct: 544 RLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGP- 602
Query: 651 CNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPISHISKVKT 705
+ DW Y + E +P E+ + + + + +K
Sbjct: 603 -----------VIDWNR---Y-----AIMYGERYFDAPQ-ENPEGYDAANLLKRAGDLKG 642
Query: 706 PTIFLL--GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754
+L GA D V + L + A + V+P+ H + P
Sbjct: 643 R--LMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGPDR 691
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 1e-18
Identities = 47/242 (19%), Positives = 101/242 (41%), Gaps = 30/242 (12%)
Query: 538 PLIVVLHGGPHSVS-LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
PL++ ++ GP S + + + A S+ + + RGS G++ + ++ ++G+
Sbjct: 503 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 562
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+V D + A MG + ++ + G S+GG++T+ ++G F A P
Sbjct: 563 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP----- 617
Query: 655 LMVGTTDIPDW-----CYVESY-GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
+ W Y E Y G + ++L + + + +S K
Sbjct: 618 -------VSRWEYYDSVYTERYMGLPTPE--------DNLDHYRNSTVMSRAENFKQVEY 662
Query: 709 FLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767
L+ G D V Q ++AL + GV+ + + + ++ HGI + + ++ + K
Sbjct: 663 LLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIK 722
Query: 768 KY 769
+
Sbjct: 723 QC 724
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 106/687 (15%), Positives = 215/687 (31%), Gaps = 136/687 (19%)
Query: 100 GASAVVPSPSGSKL-------LVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYAD 152
+ SP GSKL + ++ + P Q + +E + + VY +
Sbjct: 111 PIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQI-----TFNGRENKIFNGIPDWVYEE 165
Query: 153 GWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 209
+ W+ + +AY + P + S G +
Sbjct: 166 EMLATKYALWWSPNGKFLAYAEFNDTD-IPVIAY-SYYGDEQYPRTINIP---------- 213
Query: 210 ETY--AGKRQP--SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 265
Y AG + P +F+I+ + +V + Y ++ W +
Sbjct: 214 --YPKAGAKNPVVRIFIIDTTYP---------AYVGPQEVPVPAMIASSDYYFSWLTWVT 262
Query: 266 ETRKLGIKYCYNRP---CALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFF 321
+ ++ +++ R L + +E E +
Sbjct: 263 DE-RVCLQWL-KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVST---- 316
Query: 322 PRFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 380
P FS D + S K + T+G + +++ V Q +
Sbjct: 317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTV-ENAIQITSGKWE----AINIFRVTQDSLF 371
Query: 381 DCFPG---------LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 431
+Y SI S P T L
Sbjct: 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRK-----------------------E 408
Query: 432 ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 491
+ + + V P +P D L + + + ++
Sbjct: 409 RCQYYTASFSDYAKYYALVCYGP-GIPISTL---HDGRTDQEIKILEENKELENALKNIQ 464
Query: 492 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 551
+ I K+ V ++ + + + PL++ ++GGP S S
Sbjct: 465 L----PKEEIKKLEVDEITLWY---------KMILPPQFDRSKKY-PLLIQVYGGPCSQS 510
Query: 552 -LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 608
S ++ + S G + +V+ RG+ G++ L ++ K+G +V D +TA+ I
Sbjct: 511 VRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFI 570
Query: 609 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668
+MG + ++ + G S+GG++++ + F A P + W Y
Sbjct: 571 EMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAP------------VSSWEYY 618
Query: 669 ESYGSKGKDSFTE----SPSVED-LTRFHSKSPISHISKVKTPTIFLL-GAQDLRVPVSN 722
S +TE P+ +D L + + + ++ + L+ G D V N
Sbjct: 619 ASV-------YTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQN 671
Query: 723 GLQYARALREKGVETKVIVFPNDVHGI 749
Q A+AL V+ + + + + HG+
Sbjct: 672 SAQIAKALVNAQVDFQAMWYSDQNHGL 698
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 27/219 (12%)
Query: 538 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
P++++ GG + S + + + G +++NY+ L V
Sbjct: 36 PIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQ---------LIVGDQSVYPWA 86
Query: 597 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652
+ + I + + ++ + G S GG + G A +
Sbjct: 87 LQQLGATIDWITTQASAHHV-DCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLD--- 142
Query: 653 LALMVGTTDIPDWCYVESYG-SKGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIF 709
+ Y F + + + ++ + ++ P
Sbjct: 143 -----HYQGQHAAI-ILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFV 196
Query: 710 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
A D VP N L+Y +A+ + V T +F + +HG
Sbjct: 197 WQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHG 235
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 32/216 (14%)
Query: 538 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
P I++ GG + +S + GY +L++NY + L Q+
Sbjct: 44 PAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYT--VMNKGTNYNFLS-----QN 96
Query: 597 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652
+ +V + + + NP +V ++G S GG L
Sbjct: 97 LEEVQAVFSLIHQNHKEWQI-NPEQVFLLGCSAGGHLAAWYGNSEQIHRPKG-------- 147
Query: 653 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 712
+ L T D + +E+++ + + ++ PT
Sbjct: 148 VILCYPVTSFTFGWP--------SDLSHFNFEIENISEY---NISEKVTSSTPPTFIWHT 196
Query: 713 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
A D VP+ N L+Y L + V + F + HG
Sbjct: 197 ADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHG 232
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 9e-17
Identities = 74/375 (19%), Positives = 142/375 (37%), Gaps = 64/375 (17%)
Query: 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 476
+V + G+ R++ A S S + + S+ P + +AN +
Sbjct: 410 AVPLQGGQPQRLSKAPGMHSASFAR-NASVYVDSWSNN-STPPQIE---LFRANGEKIAT 464
Query: 477 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGA-------QKPFEAIFVSSS 529
L + + ++ + PV+ + G KP F +
Sbjct: 465 LVEN-------DLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAG--FDPA- 514
Query: 530 HKKDCSCDPLIVVLHGGPHS--V----SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 583
K+ P+ V ++GGP S V +L+ GY + ++ RG+ G +
Sbjct: 515 -KRY----PVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRD 569
Query: 584 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643
+L GK G+ +V D L + + +P+++ V G S+GG++T L+ +A D +
Sbjct: 570 FGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYAC 629
Query: 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPIS 698
A P + DW Y DS +TE P+ + + ++
Sbjct: 630 GVAGAP------------VTDWGL---Y-----DSHYTERYMDLPA-RNDAGYREARVLT 668
Query: 699 HISKVKTPTIFLL--GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756
HI +++P LL G D V +N AL+++G +++ +P HG+ +
Sbjct: 669 HIEGLRSP--LLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADALH 726
Query: 757 ESFLNIGLWFKKYCK 771
+ + + K
Sbjct: 727 R-YRVAEAFLGRCLK 740
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 1e-16
Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 53/222 (23%)
Query: 538 PLIVVLHGGPHSVS----------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS 587
PL+V LHG + + + +L + +
Sbjct: 175 PLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDR 234
Query: 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 647
+ + V+ I ++D + +++ + G S GG+ T I + P+ F AA
Sbjct: 235 ENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIP- 293
Query: 648 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 707
+ G D+ I P
Sbjct: 294 --------ICGGGDVSKV-----------------------------ERIKD-----IPI 311
Query: 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749
D VPV N + L E G + + +
Sbjct: 312 WVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEK 353
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-16
Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 23/214 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P +++L G + + + G + + G GE K + D
Sbjct: 153 PAVIMLGGLESTKE--ESFQMENLVLDRGMATATFDGPGQ---GE----MFEYKRIAGDY 203
Query: 598 NDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+A+ D + + + V+G S GG P A + +L
Sbjct: 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYW 262
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQD 715
T + + + E H+ +S++ PT L G D
Sbjct: 263 DLETPLTKESWKYVSKVDTLE--------EARLHVHAALETRDVLSQIACPTYILHGVHD 314
Query: 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749
VP+S + + + ++V + H
Sbjct: 315 -EVPLSFVDTVLELVPAEHLN--LVVEKDGDHCC 345
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-16
Identities = 42/244 (17%), Positives = 93/244 (38%), Gaps = 32/244 (13%)
Query: 538 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 497 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 556
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPL 650
+ D + A+ ++ + ++V V G +GG+L+T+++ + F +A +P
Sbjct: 557 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP- 615
Query: 651 CNLALMVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTP 706
I D+ S F+E D + +S ++
Sbjct: 616 -----------ITDFKLYASA-------FSERYLGLHG-LDNRAYEMTKVAHRVSALEEQ 656
Query: 707 TIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
++ D ++ + + L + ++P++ H + +I +
Sbjct: 657 QFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINF 716
Query: 766 FKKY 769
F +
Sbjct: 717 FVEC 720
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 3e-16
Identities = 32/222 (14%), Positives = 61/222 (27%), Gaps = 31/222 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLGFGEEALQSLPGKVGS 594
L++ LHG S L + G+ LL + G + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 595 QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
+ V + + + GGS G F+ L+ + A
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLA-------- 134
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLG 712
+G+ + + + P + P + L G
Sbjct: 135 --FIGSGFPMKL------------PQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHG 180
Query: 713 AQDLRVPVSNGLQYARALREKGVETKV--IVFPNDVHGIERP 752
++D VP++ + ALR E ++ V H +
Sbjct: 181 SRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPL 222
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 4e-16
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 33/243 (13%)
Query: 538 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
P I+++ GG + ++ + GY + Y L + +G
Sbjct: 51 PAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYT---------LLTDQQPLGLAP 101
Query: 597 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC- 651
V D+ A+ H + + +P ++T G S GG + + P
Sbjct: 102 VLDLGRAVNLLRQHAAEWHI-DPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAML 160
Query: 652 --NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIF 709
N ++ P + + T +P+ +L + H++ PT
Sbjct: 161 KPNNVVLG----YPVISPLLGFPKDDATLATWTPTPNEL------AADQHVNSDNQPTFI 210
Query: 710 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI-----ERPQSDFESFLNIGL 764
A D VP +N L YA AL + ++ VF + HG+ + + ++
Sbjct: 211 WTTADDPIVPATNTLAYATALATAKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAH 270
Query: 765 WFK 767
W
Sbjct: 271 WLT 273
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 31/245 (12%), Positives = 69/245 (28%), Gaps = 37/245 (15%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS---------LGFGEEALQSL 588
PL +++HG L+ +G + L + G +
Sbjct: 28 PLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKW----- 82
Query: 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648
+ ++L +D+ + + + G S GG D A +
Sbjct: 83 --------LTNILAVVDYAKKLDFVTD--IYMAGHSQGGLSVMLAAAMERDIIKALIPLS 132
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP----SVEDLTRFHSKSPISHISKVK 704
P + + T ++ + D++ V + K
Sbjct: 133 PAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTI---RVEDFVDKYT 189
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
P + + G QD VP + +++ + K++ P D H + +
Sbjct: 190 KPVLIVHGDQDEAVPYEASVAFSKQYKNC----KLVTIPGDTHCYDHHLELVTE--AVKE 243
Query: 765 WFKKY 769
+ +
Sbjct: 244 FMLEQ 248
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 22/234 (9%)
Query: 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599
+V++ G S+ + L+ ++L V+ G + L ++D +
Sbjct: 195 VVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV---GYSSKYPL-----TEDYSR 246
Query: 600 VLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658
+ A ++ + + + +V ++G GG L +K A +
Sbjct: 247 LHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASP 306
Query: 659 TT--DIPDWCYVESYGSK-GKDSFTESPSVEDLTRF-HSKSPISHISKVKTPTIFLLGAQ 714
+P Y++ S+ GK + + K K P + +
Sbjct: 307 QKLQQMPKM-YLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEG 365
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
D P S+ A + + +S W +
Sbjct: 366 DPVSPYSDNQMVAFFSTYG---KAKKISSKTITQGYE-----QSLDLAIKWLED 411
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 6e-14
Identities = 25/233 (10%), Positives = 67/233 (28%), Gaps = 38/233 (16%)
Query: 537 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 589
++ +HGG + + ++ + + YR S P
Sbjct: 41 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLS-----------P 89
Query: 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------F 641
+++ D ++ I ++ + + +VG S G ++ D
Sbjct: 90 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 147
Query: 642 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-- 699
+ + L+ G + + + Y D FT + + + +
Sbjct: 148 QMLGLLQIVKRVFLLDGIYSLKEL--LIEYPEY--DCFTRLAFPDGIQMYEEEPSRVMPY 203
Query: 700 ----ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
+S+ + D + + L++ + K+ + +H
Sbjct: 204 VKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 256
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 28/200 (14%)
Query: 538 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
L V +HGG + SS+S S G+++ + +Y P S+
Sbjct: 64 GLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELC-----------PEVRISEI 112
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+ A+ + + G S GG L ++ A + N+ +
Sbjct: 113 TQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVARMLDPEVLP---EAVGARIRNVVPI 166
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
+D+ + D ++SP+ ++ +G +
Sbjct: 167 SPLSDLRPL----------LRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAER 216
Query: 717 RVPVSNGLQYARALREKGVE 736
+ + A V
Sbjct: 217 PAFLDQAIWLVEAWDADHVI 236
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 1e-12
Identities = 29/233 (12%), Positives = 60/233 (25%), Gaps = 24/233 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
I++ G + + ++ +LS+ G+ + + +G S G +
Sbjct: 36 NTILIASG--FARRMDHFAGLAEYLSTNGFHVFRYDSLHHVG------LS-SGSIDEFTM 86
Query: 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCN 652
+ N + T + + ++ S + +I F + A L +
Sbjct: 87 TTGKNSLCTVYHWLQT---KGTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRD 143
Query: 653 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSV--EDLTRFHS---KSPISHISKVKTPT 707
D E + V D H S + ++ P
Sbjct: 144 TLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPL 203
Query: 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFL 760
I D V +R K+ H + +F
Sbjct: 204 IAFTANNDDWVKQEEVYDMLAHIRTG--HCKLYSLLGSSHDLGENLVVLRNFY 254
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 2e-12
Identities = 40/235 (17%), Positives = 70/235 (29%), Gaps = 48/235 (20%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+++ HG S S ++ +A L G + L+++ +
Sbjct: 36 GIVLFAHGSGSS-RYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLL 94
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+ ++ A D + KV G S GG + P+ A +R +LA
Sbjct: 95 ASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA-- 152
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
S + VK PT+ ++G DL
Sbjct: 153 ----------------------------------------PSALPHVKAPTLLIVGGYDL 172
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
V N AL + ++++ P H E P + WF Y +
Sbjct: 173 PVIAMN----EDALEQLQTSKRLVIIPRASHLFEEPGALTAVAQLASEWFMHYLR 223
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 44/235 (18%), Positives = 71/235 (30%), Gaps = 32/235 (13%)
Query: 538 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
PL V +HGG + +S + L GY + +++Y P Q
Sbjct: 83 PLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLC-----------PQVTLEQL 131
Query: 597 VNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ ++ + D S +T G G L ++ + A + L
Sbjct: 132 MTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQIL--MRPNVITAQRSKMVWALIF 189
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-----PTIFL 710
+ G D+ + +ES K E S SP+ T +
Sbjct: 190 LCGVYDLRELSNLESVNPKNILGLNER-------NIESVSPMLWEYTDVTVWNSTKIYVV 242
Query: 711 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH-----GIERPQSDFESFL 760
D + YA LR+KG + +F H SD FL
Sbjct: 243 AAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFL 297
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A Length = 254 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 38/238 (15%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFG--EEALQSLPGKVGS 594
D +++L G S + + L L+ ++++ + RG +G + P
Sbjct: 23 DHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRG---YGHSRPPDRDFPADFFE 78
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAARNP 649
+D D + + + KV+++G S GG + P A A
Sbjct: 79 RDAKDAVDLMKA---LKFK---KVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVT 132
Query: 650 LCNLALMVGTTDIPDWC------YVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHI-- 700
+ + G D+ W Y G D F + D R P +I
Sbjct: 133 DEDSMIYEGIRDVSKWSERTRKPLEALY---GYDYFARTCEKWVDGIRQFKHLPDGNICR 189
Query: 701 ---SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQ 753
+V+ P + + G +D VP + + + KG + + P H +
Sbjct: 190 HLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV--KGSR--LHLMPEGKHNLHLRFAD 243
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} Length = 275 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 6e-11
Identities = 36/257 (14%), Positives = 68/257 (26%), Gaps = 46/257 (17%)
Query: 538 PLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+IV +HGG + S + + Y L+ ++YR E SL
Sbjct: 30 GVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYR----LLPEV--SLDC-----I 78
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA------AARNPL 650
+ DV + D + + + G S G +L+ + V P
Sbjct: 79 IEDVYASFDAIQS--QYSNCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPF 136
Query: 651 CNLALMVG--------------------TTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 690
D ++ ++G + ++ D T
Sbjct: 137 KTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTD 196
Query: 691 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-I 749
+ K P D VPV + + + + + H
Sbjct: 197 -SKYNIAPDELKTLPPVFIAHCNGDYDVPV----EESEHIMNHVPHSTFERVNKNEHDFD 251
Query: 750 ERPQSDFESFLNIGLWF 766
RP + + + F
Sbjct: 252 RRPNDEAITIYRKVVDF 268
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 8e-10
Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 25/238 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG-FGEEALQSLPGKVG 593
+ ++ HG + + S + L + + ++ G S G F +
Sbjct: 47 DMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTV-------- 98
Query: 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
++ D +++V + + +VG + GG + + L G PD P L
Sbjct: 99 LNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156
Query: 654 ALMVGTTDIPDWCYVESY--GSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFL 710
+ Y + T + + ++ P +
Sbjct: 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLP---IYEVSAQFTKPVCLI 213
Query: 711 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
G D V + +Y + + + + H + + +
Sbjct: 214 HGTDDTVVSPNASKKYDQIYQNS----TLHLIEGADHCFSDSYQK-NAVNLTTDFLQN 266
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} Length = 274 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 33/241 (13%), Positives = 65/241 (26%), Gaps = 48/241 (19%)
Query: 538 PLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
+V LHGG + S + L L S GY++L ++Y L +
Sbjct: 28 NYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYL--LAP--NT--KID-----H 76
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ + + + + + G S GG+L L Q + L
Sbjct: 77 ILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQF------LVN 129
Query: 656 MVGTTDI-----PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 710
G TD+ P ++ +K + ++ V D + + F
Sbjct: 130 FYGYTDLEFIKEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFY 189
Query: 711 LGAQDLRVPVSN-----------------------GLQYARALREKGVETKVIVFPNDVH 747
++ +Y++ + E+ H
Sbjct: 190 GLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKAVYYLEH 249
Query: 748 G 748
Sbjct: 250 D 250
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 34/240 (14%)
Query: 540 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596
++++HG S+ + LA + GY++ + +G G E + + D
Sbjct: 43 VLLVHGFTGTPHSM----RPLAEAYAKAGYTVCLPRLKGH-GTHYEDM----ERTTFHDW 93
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V V + + V G S GG LT +L PD + A+
Sbjct: 94 VASVEEGYGWLKQRC----QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIA 149
Query: 657 VGTTDIPDWC-YVESYGSKGKDSFTE--------SPSVEDLTRFHSKSPISHISKVKTPT 707
G T + Y++S GS K+ + + S+ L R +++ + + ++ P
Sbjct: 150 AGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTK-AKLDRIVCPA 208
Query: 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ--SDFESFLN 761
+ + +D VP N + + E ++ N H ++P F
Sbjct: 209 LIFVSDEDHVVPPGNADIIFQGISSTEKE--IVRLRNSYHVATLDYDQPMIIERSLEFFA 266
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 39/236 (16%), Positives = 70/236 (29%), Gaps = 28/236 (11%)
Query: 540 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQD 596
+V+LH + +A L GY + + + G + L K
Sbjct: 25 VVLLHAYTGSPNDM----NFMARALQRSGYGVYVPLFSGHGTVEPLDIL----TKGNPDI 76
Query: 597 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ A+ H+ +KV V G S GG + P +P+
Sbjct: 77 WWAESSAAVAHMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKH 132
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTPTIFLL 711
+ + Y+ K +S + + +F + + + ++ VK PT
Sbjct: 133 HLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQF-ATTVAADLNLVKQPTFIGQ 191
Query: 712 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ--SDFESFLN 761
QD V Q AL + + H I D +F+
Sbjct: 192 AGQDELVDGRLAYQLRDALI-NAARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQ 246
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 52/222 (23%)
Query: 538 PLIVVLH---GGPHSVSLSSYSKSLA-FLSSVGYSLLIVN--YRG----SLGFGEEALQS 587
P+++V+ G + + + L L+ GY + +R +
Sbjct: 33 PIVIVVQEIFG------VHEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKE 86
Query: 588 LPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646
L KV V D+ G + ++ + G GG +T P + AA
Sbjct: 87 LVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ--LKAAV 143
Query: 647 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP 706
+ YG + SP K P+ + P
Sbjct: 144 -------------------AW---YGKLVGEKSLNSP----------KHPVDIAVDLNAP 171
Query: 707 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
+ L GA+D +P +ALR +++V+P H
Sbjct: 172 VLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHA 213
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} Length = 245 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 32/251 (12%), Positives = 86/251 (34%), Gaps = 48/251 (19%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE---EALQSLPGKVG 593
++ +HG +L + + +L Y+ ++++ +G GE + ++
Sbjct: 16 PNTLLFVHGSG--CNLKIFGELEKYLE--DYNCILLDLKG---HGESKGQCPSTV----- 63
Query: 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAAR- 647
+++V I + + +T++G S GG + + + ++ AR
Sbjct: 64 YGYIDNVANFITNSEVT--KHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARF 121
Query: 648 -------------NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 694
N L N L+ I + + + + KD + DL
Sbjct: 122 DKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYFETLEKDPDI---MINDLIACKLI 178
Query: 695 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERP 752
+ ++ + P ++ +L V + + +++ +F H +
Sbjct: 179 DLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLVVNA 234
Query: 753 Q---SDFESFL 760
+ + ++F+
Sbjct: 235 KGVAEEIKNFI 245
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 74/493 (15%), Positives = 147/493 (29%), Gaps = 174/493 (35%)
Query: 352 HRIDWPTNGNFSSLEKIVDVIPVVQCA---EGDC-----FP-GLYSSS----ILSNPWLS 398
H +D+ T + + D++ V + A DC P + S I+ +
Sbjct: 5 HHMDFETGEHQYQYK---DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 458
G L ++ + ++ V E+LRI N+ + L++ + + P
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFV--EEVLRI-----NYKF-LMS-------PIKTEQRQ-P 105
Query: 459 QVKYGYFVDKANKGTWSWLNVSSP--ISRCPEKVKSLLSSRQFSIMKI-PVKGVSANLTK 515
+ ++++ ++ ++ V + +SR + L RQ +++++ P K V +
Sbjct: 106 SMMTRMYIEQRDR-LYNDNQVFAKYNVSR-LQPYLKL---RQ-ALLELRPAKNVLIDGVL 159
Query: 516 GAQKPFEAIFVSSSHK--------------KDCSCDPLIV------VLHGGPHSVSLSSY 555
G+ K + A+ V S+K K+C+ ++ + P+ S S +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 556 SKSLA------------FLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVND-- 599
S ++ L S Y LL++ +V +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------------------NVQNAK 257
Query: 600 VLTAIDH------------VIDMGLANPSKVTVVGGSHGGFLTTHL-------IGQAPDK 640
A + V D A + + + + P
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 641 F-VAAAARNPLCNLAL-MVGTT--DIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKS 695
NP L ++ + D W + + ES S+ L
Sbjct: 318 LPREVLTTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLE------ 367
Query: 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755
P + R + L VFP H I P
Sbjct: 368 ----------PA-------EYR-------KMFDRL---------SVFPPSAH-I--P--- 388
Query: 756 FESFLNIGLWFKK 768
L++ +WF
Sbjct: 389 -TILLSL-IWFDV 399
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 8e-05
Identities = 91/658 (13%), Positives = 171/658 (25%), Gaps = 236/658 (35%)
Query: 19 TAEEEYASLSKLLQDFTN--ISSIDKAWTFNSGNGNGTQAMFS-------ISQPNLLANK 69
T E +Y +L F + + + D + +++ S I + A
Sbjct: 11 TGEHQY-QYKDILSVFEDAFVDNFDCKDVQDM-----PKSILSKEEIDHIIMSKD--AVS 62
Query: 70 RKKFMLSTVISKENENSV------------TFQWAPFPVEMTGASAVVPSPSGSKLLVVR 117
+ T++SK E V F +P E PS + R
Sbjct: 63 GTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-----PSMMTRMYIEQR 116
Query: 118 NPENESPIQFELWSQSQLEKEFHVPQ--------------------TVHG---------- 147
+ L++ +Q+ +++V + + G
Sbjct: 117 DR---------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 148 -SVYADGWFE-----GISW------NSDETLIA------------YVAEEPSPSKPTFSL 183
V + I W NS ET++ + + S +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 184 GSTKGGSSD-------KDC-----NSWKGQGDWE-------------------------- 205
S + ++C N + W
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 206 -----EDWGETYAGKRQPSLF--VININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLH- 255
+ T SL ++ ++ + + P+ LS+ + + +GL
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLAT 343
Query: 256 -QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----V 310
V T I+ N L +E ++ + L V
Sbjct: 344 WDNWKHVNCDKLTTI--IESSLN----------VLEPAEYRKM------FDRLSVFPPSA 385
Query: 311 NLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDW---PTNGNFSSL 365
++ + S + + L S V+ +T S+ I N +L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 366 EK-IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG- 423
+ IVD + + + S L P+L D S I G
Sbjct: 446 HRSIVDHYNIPKT---------FDSDDLIPPYL-DQ--YFYSHI--------------GH 479
Query: 424 ELLRITPAES---------NFSW--SLLTLDGDNIIAVSSSPVDVPQVK-Y-GYFVDKAN 470
L I E +F + + D A S + Q+K Y Y D N
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--N 537
Query: 471 KGTWSWL---------NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQK 519
+ L + + LL + ++M + + K Q+
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKY--TDLL---RIALMA-EDEAIFEEAHKQVQR 589
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 35/249 (14%), Positives = 65/249 (26%), Gaps = 61/249 (24%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN-----YRGSLGFGEEALQSL---- 588
L+++ HGG + + L G S + ++ R S+ G E +
Sbjct: 57 RLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDA 116
Query: 589 ------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 642
G + + D A+D + P G S G + + +
Sbjct: 117 FPRMWHEGGGTAAVIADWAAALDFI--EAEEGPRPTGWWGLSMGTMMGLPVTASDKR--I 172
Query: 643 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 702
A G G + V +
Sbjct: 173 KVAL------------------------LGLMGVEGVNGEDLVRLAPQ------------ 196
Query: 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 762
V P +LL D V + +GL+ L + + V P + + +
Sbjct: 197 VTCPVRYLLQWDDELVSLQSGLELFGKL--GTKQKTLHVNPGKHSAVPTWEMFAGTV--- 251
Query: 763 GLWFKKYCK 771
+ + K
Sbjct: 252 -DYLDQRLK 259
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} Length = 289 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 47/274 (17%), Positives = 104/274 (37%), Gaps = 73/274 (26%)
Query: 537 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGS 594
D +V+LHG GP + +++S+++ L GY +++++ G +G+ +++ + +
Sbjct: 36 DETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPG---WGKSDSVVNSGSRSDL 92
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+ + +D + + +K+ ++G S GG + + P++ V L
Sbjct: 93 N-ARILKSVVDQ---LDI---AKIHLLGNSMGGHSSVAFTLKWPER-VGK--------LV 136
Query: 655 LM-VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS---------- 698
LM GT + + + + G K + P++E+L S ++
Sbjct: 137 LMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNN 196
Query: 699 ---------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731
++++K T+ + G D VP+ GL+ +
Sbjct: 197 MLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGI- 255
Query: 732 EKGVETKVIVFPNDVHG--IERPQ---SDFESFL 760
G E + +F + H E +FL
Sbjct: 256 -AGSE--LHIFRDCGHWAQWEHADAFNQLVLNFL 286
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 5e-06
Identities = 32/282 (11%), Positives = 76/282 (26%), Gaps = 38/282 (13%)
Query: 509 VSANLT--KGAQKPFEAIFV---SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS 563
+ + + + + S K+ +P I ++ S + ++
Sbjct: 100 STFLVLKPEHLKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMV--- 156
Query: 564 SVGYSLLIVNYRG------------SLGFGEEALQSLPGKVG----SQDVNDVLTAIDHV 607
GY + V+ + + + ++G + ++ +
Sbjct: 157 KEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWM 216
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
++ + G S G ++G A + LC PD
Sbjct: 217 KAQSYIRKDRIVISGFSLGTE-PMMVLGVLDKDIYAFVYNDFLCQTQERAVVMTKPDKEN 275
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726
+ + + + + +P P IF G D + +Q
Sbjct: 276 RRPFPNSIRHLIPGYWRYFNFPDVVASLAP--------RPIIFTEGGLDRDFRL---VQS 324
Query: 727 ARALREKGVETKVIVFPNDVHGIERPQSDF-ESFLNIGLWFK 767
A A K + +P R + + L+ +F+
Sbjct: 325 AYAASGKPENAEFHHYPKFADKAVRKDVEHLDEGLDSKTYFE 366
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 47/250 (18%), Positives = 79/250 (31%), Gaps = 53/250 (21%)
Query: 540 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596
+++LHG +S + + L FL S GY+ Y+G G E L G D
Sbjct: 19 VLLLHGFTGNSADV----RMLGRFLESKGYTCHAPIYKGH-GVPPEELV----HTGPDDW 69
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
DV+ + + + G K+ V G S GG + L P+ + M
Sbjct: 70 WQDVMNGYEFLKNKG---YEKIAVAGLSLGGVFSLKL-----------GYTVPIEGIVTM 115
Query: 657 VGTTDIPDW--------CYVESYGSK-GKDSFTESPSVEDLTRFHSKSPIS--------- 698
I Y Y + GK +E + K+ +
Sbjct: 116 CAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVR 175
Query: 699 -HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ 753
H+ + PT + D + + + + + + H I E+ Q
Sbjct: 176 DHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQ--IKWYEQSGHVITLDQEKDQ 233
Query: 754 --SDFESFLN 761
D +FL
Sbjct: 234 LHEDIYAFLE 243
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 50/265 (18%)
Query: 530 HKKDCSCDPLIVVLHG------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG- 579
P + L G G ++ + +S+G + +Y G S G
Sbjct: 30 RAPAQDERPTCIWLGGYRSDMTGTKALEMD------DLAASLGVGAIRFDYSGHGASGGA 83
Query: 580 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639
F + + S+ + + L +DH P K +VG S GG++ LI +
Sbjct: 84 FRDGTI--------SRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKA 129
Query: 640 KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH------- 692
+ + L+ D G + + E+ E+++ +
Sbjct: 130 ---RHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFT 186
Query: 693 --------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744
+ ++ + P L G D VP + L+ L V + + +
Sbjct: 187 RALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPADDV--VLTLVRD 244
Query: 745 DVHGIERPQSDFESFLNIGLWFKKY 769
H + RPQ I +
Sbjct: 245 GDHRLSRPQDIDRMRNAIRAMIEPR 269
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A Length = 322 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 59/237 (24%)
Query: 537 DPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLG----FGEEALQSLPG 590
I+ LHGG + + S++++ + +S + L+++YR L F A+
Sbjct: 80 GKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYR--LAPEHPFPA-AV----- 131
Query: 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAA 646
D + A ++D G P +++ G S GG L ++ A D+ +A
Sbjct: 132 -------EDGVAAYRWLLDQGFK-PQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIP 183
Query: 647 RNPLCNLAL-------------MVGTTDIPDWCYVESY-GSKGKDSFTESPSVEDLTRFH 692
+P ++ MV I + Y SP+ +L
Sbjct: 184 ISPWADMTCTNDSFKTRAEADPMVAPGGI-NK-MAARYLNGADAKHPYASPNFANLKGL- 240
Query: 693 SKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
P P + +G + L + ++ + GV++ + ++ + +H
Sbjct: 241 ---P---------PLLIHVGRDEVLL---DDSIKLDAKAKADGVKSTLEIWDDMIHV 282
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 538 PLIVVLHG--GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
P IV+ S Y++++A G+ L + GE P V S
Sbjct: 97 PAIVIGGPFGAVKEQSSGLYAQTMA---ERGFVTLAFDPSY---TGE--SGGQPRNVASP 148
Query: 596 D--VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
D D A+D + + N ++ V+G G + + + A DK V A + + ++
Sbjct: 149 DINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAV--AVDKRVKAVVTSTMYDM 206
Query: 654 ALMV 657
++
Sbjct: 207 TRVM 210
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
I + G ++ + SS + ++S G+ ++ ++ +L + ++ +
Sbjct: 97 GAIAISPG--YTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQPDSR---------ARQL 145
Query: 598 N---DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649
N D + + S++ V+G S GG T + AA P
Sbjct: 146 NAALDYMLTDASSAVRNRIDASRLAVMGHSMGGG-GTLRLASQRPDLKAAIPLTP 199
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A Length = 322 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 61/238 (25%)
Query: 537 DPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSL------ 588
I+ HGG + S S++ L+ +L ++YR L
Sbjct: 80 AAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYR------------LAPENPF 127
Query: 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAA 644
P V +D + A ++ + ++ + G S GG LTT + +A +
Sbjct: 128 PAAV-----DDCVAAYRALLKTAGS-ADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGL 181
Query: 645 AARNPLCNLAL------------MVGTTDIPDWCYVESY-GSKGKDSFTESPSVEDLTRF 691
+P +L L + D E Y G + + + SP DL+
Sbjct: 182 VMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGEM-SELYVGGEDRKNPLISPVYADLSGL 240
Query: 692 HSKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
P + +G+++ L S+ A GV ++ ++P+ H
Sbjct: 241 ----P---------EMLIHVGSEEALL---SDSTTLAERAGAAGVSVELKIWPDMPHV 282
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A Length = 291 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 46/256 (17%), Positives = 88/256 (34%), Gaps = 73/256 (28%)
Query: 537 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
D +V+LHG GP + S +++S+++A L+ + +L V+ G+G S Q
Sbjct: 36 DQTVVLLHGGGPGAASWTNFSRNIAVLAR-HFHVLAVDQ---PGYG----HSDKRAEHGQ 87
Query: 596 DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
A+ + D +GL +V +VG + GG P + L
Sbjct: 88 FNRYAAMALKGLFDQLGL---GRVPLVGNALGGGTAVRFALDYPAR-AGR--------LV 135
Query: 655 LM--VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS--------- 698
LM G + + G K F+ +P+ E+L + K+ I+
Sbjct: 136 LMGPGGLSINLFA-PDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFA 194
Query: 699 ------------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728
+ +++ P + + G +D P+ L +
Sbjct: 195 LASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALK 254
Query: 729 ALREKGVETKVIVFPN 744
+ + + VF
Sbjct: 255 TI--PRAQ--LHVFGQ 266
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* Length = 273 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
V++HG H S+ K L + G+ + ++ S G + + +
Sbjct: 5 KHFVLVHGACHGGW--SWYKLKPLLEAAGHKVTALDLAAS---GTDLRKIEELRTLYDYT 59
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651
++ ++ L+ KV +VG S GG + + P K AA
Sbjct: 60 LPLMELMES-----LSADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFM 108
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A Length = 286 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 45/273 (16%), Positives = 83/273 (30%), Gaps = 73/273 (26%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+++LHG GP + S+Y +++ GY +++ + G F + + + G +
Sbjct: 34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVN 90
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V +D + + + +VG + GG + + PD+ + L LM
Sbjct: 91 ARAVKGLMDA---LDI---DRAHLVGNAMGGATALNFALEYPDR-IGK--------LILM 135
Query: 657 --VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS----------- 698
G G K PS E L + + +S I+
Sbjct: 136 GPGGLGPSMFAPMPME-GIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAI 194
Query: 699 --------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732
+ ++K T G D VP+ +GL+ +
Sbjct: 195 QRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-- 252
Query: 733 KGVETKVIVFPNDVHG--IERPQ---SDFESFL 760
+ VF E FL
Sbjct: 253 DDAR--LHVFSKCGAWAQWEHADEFNRLVIDFL 283
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} Length = 176 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 23/195 (11%), Positives = 52/195 (26%), Gaps = 54/195 (27%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
++ HG S + +LA +G++ ++ G
Sbjct: 5 GHCILAHGF-ESGPDALKVTALAEVAERLGWTHERPDFT---DLDARRDLGQLGD-VRGR 59
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+ +L + V + G S G ++ + + + P L LM
Sbjct: 60 LQRLLEIARAATE-----KGPVVLAGSSLGSYIAAQV-----------SLQVPTRALFLM 103
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
V T + +++ P + D
Sbjct: 104 VPPTKMGPLPALDAAA--------------------------------VPISIVHAWHDE 131
Query: 717 RVPVSNGLQYARALR 731
+P ++ + +A+A
Sbjct: 132 LIPAADVIAWAQARS 146
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 36/284 (12%), Positives = 78/284 (27%), Gaps = 73/284 (25%)
Query: 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS 111
G + +++ NL NK + +T++ + +N+ + A+ SP G
Sbjct: 23 KGELVAYVLTKANLKDNKYE----NTIVIENLKNNARRF-------IENATMPRISPDGK 71
Query: 112 KLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171
K+ +R E + + +W ++ + WN D + V
Sbjct: 72 KIAFMRANEEKKVSE--IWVADLETLS-SKKILEAKNI------RSLEWNEDSRKLLIVG 122
Query: 172 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ 231
+ D+D W + + + ++ + S EV
Sbjct: 123 FKRRE---------------DEDFIFEDDVPAW--FDDLGFFDGEKTTFWIFDTESEEVI 165
Query: 232 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291
+ +W K+ + + Y +Y
Sbjct: 166 E---EFEKPRFSSGIWHR------------------DKIVVNVPHREIIPQYFKFWDIYI 204
Query: 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335
E + E + E +S F DG+ ++
Sbjct: 205 WEDGKEE------------KMFEKVS---FYAVDSDGERILLYG 233
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} Length = 377 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 538 PLIVVLHG-------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590
+I HG P + +Y A+ +S GY ++ +Y G +
Sbjct: 75 GIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNELTLHPYVQA 134
Query: 591 KVGSQDVNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAA 644
+ + D+L A + + K+ + G S GGF T + A
Sbjct: 135 ETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAV 194
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESY 671
A + + + +Y
Sbjct: 195 APGSAPYGWEETMHFVMLEPGPRATAY 221
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A Length = 282 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 52/261 (19%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGSQ 595
++++HG GP + +++ ++ LS Y ++ + G FG + ++ S
Sbjct: 26 QPVILIHGSGPGVSAYANWRLTIPALSK-FYRVIAPDMVG---FGFTDRPENYNYSKDSW 81
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-----VAAAARNPL 650
V+ ++ +D + + K +VG + GG L + ++ + AA
Sbjct: 82 -VDHIIGIMDA---LEI---EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFD 134
Query: 651 CNLALMVGTTDIPDW-----------------------CYVESYGSKG-KDSFTE-SPSV 685
L P E+ G ++SF+ P
Sbjct: 135 VTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEP 194
Query: 686 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745
S I + T+ + G +D VP+S+ L+ + + + VF
Sbjct: 195 RQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELI--DRAQ--LHVFGRC 250
Query: 746 VHG--IERPQ---SDFESFLN 761
H IE+ F N
Sbjct: 251 GHWTQIEQTDRFNRLVVEFFN 271
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* Length = 264 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
V++HGG + K L S G+ + V+ + G +
Sbjct: 11 KHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSAA---GINPRRLDEIHTFRDYS 65
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAA 646
++ + + KV ++G S GG + P+K F++A
Sbjct: 66 EPLMEVMASIPPDE-----KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP-------L 650
+D + A + +++ L PS++ G S GG L ++ PD F A A P +
Sbjct: 571 SDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTM 630
Query: 651 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 710
C+ ++ + T + +W G+ + S SP+ ++ + P I +
Sbjct: 631 CDPSIPLTTGEWEEW------GN--------PNEYKYYDYMLSYSPMDNVRAQEYPNIMV 676
Query: 711 LGA-QDLRVPVSNGLQYARALREK 733
D RV ++ LRE
Sbjct: 677 QCGLHDPRVAYWEPAKWVSKLREC 700
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} Length = 262 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 28/241 (11%), Positives = 62/241 (25%), Gaps = 62/241 (25%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596
P +V++ G + + + L+ ++++ + RG G S + +
Sbjct: 24 PPVVLVGGAL--STRAGGAPLAERLAP-HFTVICYDRRG---RG----DSGDTPPYAVER 73
Query: 597 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ D+ ID G V G S G L+ + A +
Sbjct: 74 EIEDLAAIIDAA---GG----AAFVFGMSSGAGLSLLAAASGLP--ITRLA---VFEPPY 121
Query: 656 MVGTTDIP----------------------DWCYVESYGS--------------KGKDSF 679
V + P + E G G ++
Sbjct: 122 AVDDSRPPVPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAV 181
Query: 680 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739
+ + + P + + + PT+ + G + A +
Sbjct: 182 AHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAWIRHTAQELADTI--PNARYVT 239
Query: 740 I 740
+
Sbjct: 240 L 240
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 34/282 (12%), Positives = 80/282 (28%), Gaps = 36/282 (12%)
Query: 509 VSANLT--KGAQKPFEAIFV---SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS 563
+ + KP AI S +K+ + +P I + + + +
Sbjct: 105 STFLVLIPDNINKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFV--- 161
Query: 564 SVGYSLLIVNYRG------------SLGFGEEALQSLPGKVG----SQDVNDVLTAIDHV 607
GY + V+ + + + ++G + ++ +
Sbjct: 162 KEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWM 221
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
++ V G S G ++G A + LC +PD
Sbjct: 222 KTQKHIRKDRIVVSGFSLGTEPMM-VLGTLDTSIYAFVYNDFLCQTQERAEVMTMPDKNG 280
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
+ + + + D + + I + P I G D + + ++ A
Sbjct: 281 RRPFPN------SIRHLIPDFWKNFNFPDIVAALAPR-PIILTEGGLDRDLDL---VRKA 330
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDF-ESFLNIGLWFKK 768
A+ K+ + R ++ L+ +F+
Sbjct: 331 YAIVGTPDNVKIYHYKKFSDPDTRKNVEYLPEGLDRNEYFRM 372
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 Length = 210 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 6e-04
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 10/139 (7%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+++LHG S +L L+ GY + ++ G G +E
Sbjct: 32 RFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGL-GHSKE-----AAAPAPIG 85
Query: 597 VNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ + V+D + L V+ S G + + + P+C +
Sbjct: 86 ELAPGSFLAAVVDALEL---GPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI 142
Query: 656 MVGTTDIPDWCYVESYGSK 674
+ YG +
Sbjct: 143 NAANYASVKTPALIVYGDQ 161
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 526 VSSSHKKDCSCD---PLIVVLHG-GPHSVSLS-SYSKS-LAFLSSVGYSLLIVNYRGSLG 579
+ HKK D P L+G G ++S++ +YS S L F+ +G L + N RG
Sbjct: 452 MFIVHKKGIKLDGSHPAF--LYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGE 509
Query: 580 FGE---EALQSLPGKVGS-QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 634
+GE + G + + Q+ +D A +++I G +P ++T+ GGS+GG L
Sbjct: 510 YGETWHKG-----GILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCA 564
Query: 635 GQAPDKFVAAAARNP 649
Q PD F A+
Sbjct: 565 NQRPDLFGCVIAQVG 579
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 7e-04
Identities = 33/305 (10%), Positives = 81/305 (26%), Gaps = 49/305 (16%)
Query: 158 ISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 217
+ D + + + K +++ + + +
Sbjct: 341 VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN-LGNVFAMGVDRNGKFAVVANDR 399
Query: 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277
+ +++ +G+ + + + + + +++ + G
Sbjct: 400 FEIMTVDLETGKPTVI-ERSREAMITDFTISDNS----RFIAYGFPLKHGETDGYVM--- 451
Query: 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337
+ +Y E + + T S + P F D K L +LS +
Sbjct: 452 -------QAIHVYDMEGRK------------IFAATTENSHDYAPAFDADSKNLYYLSYR 492
Query: 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397
S + +++ S E + + L S+ S
Sbjct: 493 S------LDPSPDRVVLNF-------SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 539
Query: 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV 457
D + +NV G+ I P ES+ + + G+ +P
Sbjct: 540 YDL--------NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591
Query: 458 PQVKY 462
+KY
Sbjct: 592 VLLKY 596
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} Length = 315 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 26/137 (18%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
I+++HG ++ +++ L+ GY ++ V+ G F + S P
Sbjct: 47 RTILLMHGKN--FCAGTWERTIDVLADAGYRVIAVDQVG---FCK---SSKPAHYQYSFQ 98
Query: 594 --SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARN 648
+ + + +L + ++ +V+G S GG L T P + V
Sbjct: 99 QLAANTHALLERLGV---------ARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149
Query: 649 PLCNLALMVGTTDIPDW 665
AL V + DW
Sbjct: 150 LEDWKALGVPWRSVDDW 166
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* Length = 236 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 36/174 (20%), Positives = 51/174 (29%), Gaps = 45/174 (25%)
Query: 582 EEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF 641
E+A + V D+ AI + +N KV +VG S GG L + A +
Sbjct: 82 EQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLV---ASKGY 137
Query: 642 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 701
V A Y YG + + P
Sbjct: 138 VDRAV-------------------GY---YGVGLEKQLNKVP------------------ 157
Query: 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755
+VK P +F +G QD VP Q +V + H R S
Sbjct: 158 EVKHPALFHMGGQDHFVPAP-SRQLITEGFGANPLLQVHWYEEAGHSFARTGSS 210
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 15/133 (11%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
V++H H + K +A + S G+++ ++ S G Q+L S +
Sbjct: 13 KHFVLVHAAFHGAW--CWYKIVALMRSSGHNVTALDLGAS---GINPKQALQIPNFSDYL 67
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAARNPLCN 652
+ ++ + + K+ +VG + GG + + P+K F++ P +
Sbjct: 68 SPLMEFMASLPANE-----KIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNID 122
Query: 653 LALMVGTTDIPDW 665
+
Sbjct: 123 ATTVCTKAGSAVL 135
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.92 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.91 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.91 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.9 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.9 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.9 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.89 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.89 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.89 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.89 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.89 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.89 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.89 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.89 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.88 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.88 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.88 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.88 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.88 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.88 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.88 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.87 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.87 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.86 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.86 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.86 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.86 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.86 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.86 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.86 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.86 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.85 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.85 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.85 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.85 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.85 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.85 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.85 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.85 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.85 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.85 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.85 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.85 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.85 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.85 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.85 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.85 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.85 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.85 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.84 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.84 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.84 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.84 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.83 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.83 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.83 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.83 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.82 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.82 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.82 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.82 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.81 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.81 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.81 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.81 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.81 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.81 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.81 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.81 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.81 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.8 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.8 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.8 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.8 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.8 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.79 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.79 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.79 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.79 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.79 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.79 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.78 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.78 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.78 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.77 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.77 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.77 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.77 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.77 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.77 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.77 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.76 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.76 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.76 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.76 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.76 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.76 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.76 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.76 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.76 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.75 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.75 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.75 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.75 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.75 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.75 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.75 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.75 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.75 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.75 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.74 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.74 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.74 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.74 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.74 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.74 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.74 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.74 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.74 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.74 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.74 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.73 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.73 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.73 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.73 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.73 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.73 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.73 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.73 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.72 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.72 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.72 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.72 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.72 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.71 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.71 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.71 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.71 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.71 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.71 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.7 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.7 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.7 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.7 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.7 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.69 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.69 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.69 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.69 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.69 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.69 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.69 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.69 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.69 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.69 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.68 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.68 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.68 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.68 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.68 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.68 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.67 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.67 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.66 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.66 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.66 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.66 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.66 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.66 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.65 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.65 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.65 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.64 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.64 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.64 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.63 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.63 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.63 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.63 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.62 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.62 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.62 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.62 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.61 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.61 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.61 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.39 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.59 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.58 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.57 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.56 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.56 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.55 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.55 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.54 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.53 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.53 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.53 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.53 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.53 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.52 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.52 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.52 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.52 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.51 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.51 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.5 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.49 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.49 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.49 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.49 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.49 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.48 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.48 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.47 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.47 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.47 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.46 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.45 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.45 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.44 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.43 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.43 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.42 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.4 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.4 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.4 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.4 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.4 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.4 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.4 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.39 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.39 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.38 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.37 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.37 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.37 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.37 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.36 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.36 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.36 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.35 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.35 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.35 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.34 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.34 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.34 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.34 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.33 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.33 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.33 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.33 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.32 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.32 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.32 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.32 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.32 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.31 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.31 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.3 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.3 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.29 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.29 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.29 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.29 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.29 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.28 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.28 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.27 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.27 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.27 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.27 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.26 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.26 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.25 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.25 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.25 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.25 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.23 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.23 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.23 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.22 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.22 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.21 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.21 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.21 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.2 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.2 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.2 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.19 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.19 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.18 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.17 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.16 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.16 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.16 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.15 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.15 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.14 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 99.13 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.12 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.12 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.12 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.12 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.12 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.12 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.11 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.1 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.09 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.09 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.08 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.08 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.08 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.08 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.07 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.07 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.06 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.05 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.05 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.05 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.04 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.04 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.03 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.03 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.03 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.02 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.01 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.01 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.01 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.0 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.0 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.99 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.99 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.95 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.95 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.95 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.92 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.92 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.92 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.91 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.91 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.9 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.9 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.89 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.89 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.89 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.87 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.87 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.87 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.86 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.86 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.86 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.86 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.84 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.84 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.83 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.82 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.82 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.82 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.81 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.81 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.8 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.78 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.77 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.76 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.74 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.73 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.73 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.72 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.72 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.72 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.71 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.68 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.68 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.67 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.66 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.64 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.63 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.62 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.61 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.61 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.59 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.57 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.54 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.53 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.52 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.5 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.48 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.47 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.45 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.41 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.39 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.37 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.36 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.36 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.3 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.3 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.28 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.28 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.25 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.24 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.23 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.22 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.21 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.21 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.19 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.19 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.16 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.15 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.14 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.1 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.07 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.06 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.98 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.96 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.95 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.94 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.93 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.93 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.89 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.88 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.85 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.8 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.78 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.77 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.75 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.75 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.67 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.65 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.64 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.64 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.61 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.58 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.57 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.55 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.55 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.52 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.52 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.47 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.47 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.4 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.38 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.35 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.21 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 97.18 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.17 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.09 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.97 | |
| 4az3_A | 300 | Lysosomal protective protein 32 kDa chain; hydrola | 96.85 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.85 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.84 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-56 Score=519.89 Aligned_cols=610 Identities=15% Similarity=0.180 Sum_probs=427.8
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
.+.||||++|+|.......-+......+|++++.+ ++.++|+..+ +.+..|+|||||++|||+++. .+
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~~~~~l~~~~-----~~~~~~~~SPdG~~la~~~~~-----~i 134 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERIP-----NNTQWVTWSPVGHKLAYVWNN-----DI 134 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC-----TTEEEEEECSSTTCEEEEETT-----EE
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCC--CcEEEcccCC-----CcceeeEECCCCCEEEEEECC-----eE
Confidence 34589999999988654333334457888988743 3556665543 568899999999999999764 38
Q ss_pred EEEe-cCCcceEEEecCC------cccccccCC---CcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCC
Q 004149 127 FELW-SQSQLEKEFHVPQ------TVHGSVYAD---GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 196 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~------~~~g~~~~~---~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (771)
+.++ .+++.++++.... +....||.+ +....+.|||||++|||.+.+..... .|......... ...
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~-~~~~~~~~~~~---~~~ 210 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP-LIEYSFYSDES---LQY 210 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC-EEEEEECCSTT---CSS
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc-eEEEEeecCCC---CCC
Confidence 8777 5666666654211 111112221 11236899999999999986654221 11110000000 000
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccC---C---ceeeccCCC-----CCCccceEEEecCCCCCccEEEEEeecC
Q 004149 197 SWKGQGDWEEDWGETYAGKRQPSLFVININS---G---EVQAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---~---~~~~l~~~~-----~~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
.....+.|...+.. .....|+++|+++ + +.+.+. .+ ....+..++|||||+. +++..++.
T Consensus 211 ~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~wspdg~~----~~~~~~r~ 281 (740)
T 4a5s_A 211 PKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQIT-APASMLIGDHYLCDVTWATQERI----SLQWLRRI 281 (740)
T ss_dssp CEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEEC-CCHHHHTSCEEEEEEEEEETTEE----EEEEEESS
T ss_pred CcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEec-CCccCCCCCeEEEEEEEeCCCeE----EEEEeCCC
Confidence 00112223333211 1234799999999 8 666663 21 4446778999999998 88877543
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-------ceec--CCCCcc-----ccceeecCCCCEE
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-------VVNL--TESISS-----AFFPRFSPDGKFL 331 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~l--t~~~~~-----~~~p~~SpDG~~l 331 (771)
. ....|+++|+ ++++ ...+ ..+... ..+|.|||||+.|
T Consensus 282 ~-----------~~~~i~~~d~-----------------~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 282 Q-----------NYSVMDICDY-----------------DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp T-----------TEEEEEEEEE-----------------ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred C-----------CEEEEEEEEC-----------------CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 2 2237999998 5555 2333 112222 3489999999999
Q ss_pred E-EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-
Q 004149 332 V-FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 409 (771)
Q Consensus 332 ~-f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~- 409 (771)
+ |.+.++ | ..+||++|+.++..++++.+..++.. .+++|++.|+|.++.
T Consensus 334 ~~~~s~~~----G----~~~l~~~~~~~~~~~~lT~g~~~v~~---------------------~~~~d~~~i~f~~~~~ 384 (740)
T 4a5s_A 334 YKIISNEE----G----YRHICYFQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEY 384 (740)
T ss_dssp EEEEECTT----S----CEEEEEEETTCSSCEESCCSSSCEEE---------------------EEEECSSEEEEEESCG
T ss_pred EEEEEcCC----C----ceEEEEEECCCCceEecccCCEEEEE---------------------EEEEeCCEEEEEEecC
Confidence 8 666553 3 57899999999888888776544322 133568899999876
Q ss_pred ---CCeeEEEEEECCCCcEE-EecCC----CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCC
Q 004149 410 ---GSSQVIISVNVSSGELL-RITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSS 481 (771)
Q Consensus 410 ---~~~~~l~~~d~~tg~~~-~l~~~----~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 481 (771)
.+..+||++++++++.+ +|+.. ........||++++++++.+++++ |+.+++.+..+++ .+.
T Consensus 385 ~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~---~~~------ 454 (740)
T 4a5s_A 385 KGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDK---GLR------ 454 (740)
T ss_dssp GGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTE---EEE------
T ss_pred CCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCc---EEE------
Confidence 45679999999887765 67743 234566899999999999999988 8889988865432 111
Q ss_pred CCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcch-HHH
Q 004149 482 PISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-KSL 559 (771)
Q Consensus 482 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~-~~~ 559 (771)
+.+.++.+...+....+...+. .++ ..+|.++.++++.|+++++.+++|+||++||+++... ...|. ...
T Consensus 455 -~l~~n~~~~~~~~~~~~~~~~~------~~~-~~dg~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~ 526 (740)
T 4a5s_A 455 -VLEDNSALDKMLQNVQMPSKKL------DFI-ILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWA 526 (740)
T ss_dssp -EEECCHHHHHHHTTEECCEEEE------EEE-EETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHH
T ss_pred -EeccChhhhhhhhhccCCccEE------EEE-ccCCeEEEEEEEeCCCCCCCCCccEEEEECCCCcccccccccCcCHH
Confidence 1122333333333322211111 123 5578999999999998777888999999999887642 12222 233
Q ss_pred HHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC
Q 004149 560 AFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 560 ~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
..|+ ++||+|+++|+||++++|..+.......++...++|+.++++++.+++.+|++||+|+||||||+++++++.++|
T Consensus 527 ~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p 606 (740)
T 4a5s_A 527 TYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGS 606 (740)
T ss_dssp HHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTC
T ss_pred HHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCC
Confidence 4555 599999999999999999988877777888888999999999999888789999999999999999999999999
Q ss_pred CceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCC-ChhhHHHHhhcCccccccCCCC-cEEEEeeCCCC
Q 004149 639 DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDL 716 (771)
Q Consensus 639 ~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~-P~Lii~G~~D~ 716 (771)
++|+++|+.+|+.++..+. ..+.+.+ .+.+ .....+.+...+|...+.++++ |+||+||+.|.
T Consensus 607 ~~~~~~v~~~p~~~~~~~~-------~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~ 671 (740)
T 4a5s_A 607 GVFKCGIAVAPVSRWEYYD-------SVYTERY--------MGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADD 671 (740)
T ss_dssp SCCSEEEEESCCCCGGGSB-------HHHHHHH--------HCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCS
T ss_pred CceeEEEEcCCccchHHhh-------hHHHHHH--------cCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCCCC
Confidence 9999999999998765331 1111111 1111 1345567888899999999986 99999999999
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+||+.++.+++++|++++++++++++|+++|++...+...+++..+.+||+++|+
T Consensus 672 ~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 726 (740)
T 4a5s_A 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726 (740)
T ss_dssp SSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999986666677889999999999874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=485.77 Aligned_cols=587 Identities=18% Similarity=0.239 Sum_probs=419.3
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccc--c--ccceEEEeC--CCCCe-EEEEecCCCCCCe
Q 004149 53 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVE--M--TGASAVVPS--PSGSK-LLVVRNPENESPI 125 (771)
Q Consensus 53 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~--~--~~~~~~~~S--PdG~~-la~~~~~~~~~~~ 125 (771)
|..++|.....+ ...+..||.+ ..++..++++..+.... . .....+.|| |||++ |||.... ..+
T Consensus 33 ~~~~~~~~~~~~---~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~---~~~ 103 (662)
T 3azo_A 33 GDEVWWVAPRPA---EAGRATLVRR---RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG---DQR 103 (662)
T ss_dssp TTEEEEEEEETT---TTTEEEEEEE---CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT---TCC
T ss_pred CCeEEEEecCcc---cCCcEEEEEE---CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC---CCe
Confidence 457888876433 1245677775 23446677765542210 0 001145565 99999 9998754 356
Q ss_pred EEEEecC----CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004149 126 QFELWSQ----SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 126 ~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
+|.+..+ +..++++......++ .....++|||||++|+|.+.+.....
T Consensus 104 l~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~l~~~~~~~~~~~----------------------- 155 (662)
T 3azo_A 104 LYAFEPDAPGGAVPRPLTPVSAVGGG-----LRWADPVLLPERGEVWCMAEEFTGEG----------------------- 155 (662)
T ss_dssp EEEECTTSTTCCCCEECSCCCCSTTC-----EEEEEEEEETTTTEEEEEEEEECSSS-----------------------
T ss_pred EEEEcCCCCCCCCCEeccCCccCCCC-----ccccCcEECCCCCEEEEEEecccCCC-----------------------
Confidence 8888843 666666553211110 12358999999999999976531100
Q ss_pred ccccCCcCcccCCccCceEEEEEccC------CceeeccCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004149 202 GDWEEDWGETYAGKRQPSLFVININS------GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~------~~~~~l~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
. .....+|++||+++ ++.+.+ + ........++|||||++ |+|+++......
T Consensus 156 --------~---~~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDG~~----la~~~~~~~~~~----- 213 (662)
T 3azo_A 156 --------P---SDVRRFLAAVPLDGSAAADRSAVREL--SDDAHRFVTGPRLSPDGRQ----AVWLAWDHPRMP----- 213 (662)
T ss_dssp --------T---TCEEEEEEEEETTSTTTTCGGGSEES--SCSCSSEECCCEECTTSSE----EEEEEECTTCCT-----
T ss_pred --------C---CCceeEEEEEECCCCccccCCceeEE--EecCCCcccCceECCCCCE----EEEEECCCCCCC-----
Confidence 0 11347899999999 888888 5 55556778999999999 999986442110
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCC-CC---cceecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004149 275 CYNRPCALYAVRVSLYKSEASELELKESSSE-DL---PVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~---~~~~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
-...+||++|+ + ++ +.++|+.. ...+..|.|||||+ |+|.+..+ | ..
T Consensus 214 --~~~~~i~~~d~-----------------~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~----~----~~ 265 (662)
T 3azo_A 214 --WEGTELKTARV-----------------TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT----G----WW 265 (662)
T ss_dssp --TTCEEEEEEEE-----------------CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT----S----SC
T ss_pred --CCCcEEEEEEE-----------------CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCC----C----Ce
Confidence 02248999998 5 45 66777654 46688999999999 88888764 2 45
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+||++|+.+++.++++..... ...| .|......++|++|++ ++++... +..+||.+|++++++++|+
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~----------~~~p-~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEE----------FAGP-LWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSB----------SSCC-CCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTTEEEECC
T ss_pred EEEEEECCCCceeeccccccc----------ccCc-cccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCCcEEEec
Confidence 799999877765554432211 0001 1222234567778887 6666666 8889999999999998887
Q ss_pred CCCCCceeeEE-eecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcce-eeeeccc
Q 004149 430 PAESNFSWSLL-TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFS-IMKIPVK 507 (771)
Q Consensus 430 ~~~~~~~~~~~-s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i~~~ 507 (771)
..... ...+ +++++.+++++++.+.|..+|+.++.+++ . ..++....+ . +....+. ...
T Consensus 333 ~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~-~~l~~~~~~--~--------~~~~~~~~~~~---- 393 (662)
T 3azo_A 333 GPWTE--WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR--A-RTIGARHTD--P--------VDPAYYPEPQI---- 393 (662)
T ss_dssp SSCCE--EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC--E-EEEESCCCC--S--------SCGGGSCCCEE----
T ss_pred CCCCe--EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc--e-EEeecCCcc--c--------CCccccCcceE----
Confidence 66442 2344 88999999999999999999999876543 1 111111000 0 1111110 111
Q ss_pred CcccccccCCCceEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChh
Q 004149 508 GVSANLTKGAQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 583 (771)
Q Consensus 508 ~~~~~~~~~~g~~l~~~~~~P~~~~----~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~ 583 (771)
..+...+|..++++++.|++.. ..++.|+||++||+++......|...++.|+++||.|+++|+||++++|.+
T Consensus 394 ---~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~~ 470 (662)
T 3azo_A 394 ---RTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRA 470 (662)
T ss_dssp ---EEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECTTCSSSCHH
T ss_pred ---EEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCCCCCCccHH
Confidence 1334457889999999998653 456789999999998776556788889999999999999999999999999
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-CCCC
Q 004149 584 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTDI 662 (771)
Q Consensus 584 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-~~~~ 662 (771)
+.......++..+++|+.++++++++++.++++|++|+||||||++++.++.+ |++|+++|+.+|+.++..+.. ....
T Consensus 471 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~ 549 (662)
T 3azo_A 471 YRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHD 549 (662)
T ss_dssp HHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCSCG
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhcccccc
Confidence 98776667777789999999999999988899999999999999999998886 999999999999998776543 1111
Q ss_pred CcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 663 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
....+... +.... .+..+.+...+|+..+.++++|+|++||++|.++|++++++++++|++.|++++++++
T Consensus 550 ~~~~~~~~--------~~~~~-~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 620 (662)
T 3azo_A 550 FESRYLDF--------LIGSF-EEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSF 620 (662)
T ss_dssp GGTTHHHH--------HTCCT-TTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCCEEEEEE
T ss_pred hhhHhHHH--------HhCCC-ccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 00011111 11111 2455677788999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 743 PNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++++|++...+...++++.+.+||.++|+
T Consensus 621 ~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 649 (662)
T 3azo_A 621 EGEGHGFRRKETMVRALEAELSLYAQVFG 649 (662)
T ss_dssp TTCCSSCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHhC
Confidence 99999987666677889999999999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-53 Score=482.50 Aligned_cols=560 Identities=16% Similarity=0.215 Sum_probs=409.0
Q ss_pred HHHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceE
Q 004149 24 YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA 103 (771)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~ 103 (771)
+.+..+.++++...|-. ...+ |+||++|+|..... ....||. + .+++.+++|... ...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~----~~DG~~la~~s~~~------g~~~lw~--~--~~g~~~~lt~~~----~~~~~~ 69 (582)
T 3o4h_A 9 FSRIVRDVERLIAVEKY-SLQG----VVDGDKLLVVGFSE------GSVNAYL--Y--DGGETVKLNREP----INSVLD 69 (582)
T ss_dssp HHHHHHHHHHHHHSCEE-EEEE----EETTTEEEEEEEET------TEEEEEE--E--ETTEEEECCSSC----CSEECE
T ss_pred HHHHHHHHHHHhccchh-eeec----CCCCCeEEEEEccC------CceeEEE--E--cCCCcEeeeccc----cccccc
Confidence 55566666777666632 2222 35999999986532 3456776 4 344667776553 135788
Q ss_pred EEeCCCCCeEEEEecCC--CCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 104 VVPSPSGSKLLVVRNPE--NESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
|+|||| +++|.+... .....+|.+.. .+...+++... .. ...+|||||+.++|++...
T Consensus 70 ~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~----------~~~~~s~dg~~~~~~s~~~----- 131 (582)
T 3o4h_A 70 PHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PM----------RILSGVDTGEAVVFTGATE----- 131 (582)
T ss_dssp ECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SB----------EEEEEEECSSCEEEEEECS-----
T ss_pred ccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-Cc----------eeeeeCCCCCeEEEEecCC-----
Confidence 999999 677877652 23346666664 55544332221 22 3679999999999986432
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
..+.+||+++++.+.+. .... ..++|||||+. |+
T Consensus 132 --------------------------------------~~~~l~d~~~g~~~~l~--~~~~--~~~~~spDG~~----la 165 (582)
T 3o4h_A 132 --------------------------------------DRVALYALDGGGLRELA--RLPG--FGFVSDIRGDL----IA 165 (582)
T ss_dssp --------------------------------------SCEEEEEEETTEEEEEE--EESS--CEEEEEEETTE----EE
T ss_pred --------------------------------------CCceEEEccCCcEEEee--cCCC--ceEEECCCCCE----EE
Confidence 23347899999988883 3222 78999999999 99
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCC
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
+.+..... ...||++|+ ++++.++|+.+.+.+.+|+|||||++|+ .+...
T Consensus 166 ~~~~~~~~-----------~~~i~~~d~-----------------~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~- 215 (582)
T 3o4h_A 166 GLGFFGGG-----------RVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKVTA-GLETA- 215 (582)
T ss_dssp EEEEEETT-----------EEEEEEEET-----------------TTCCCEEECCSSCEEEEEEECTTSCEEE-EEECS-
T ss_pred EEEEcCCC-----------CeEEEEEcC-----------------CCCCceEeecCCCccccceECCCCCEEE-EccCC-
Confidence 98753221 136999998 8888899998888889999999999998 33332
Q ss_pred CCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc--------cccCCCEEEEEeeeCC
Q 004149 340 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP--------WLSDGCTMLLSSIWGS 411 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~--------~s~dg~~l~~~~~~~~ 411 (771)
| ..+|+++|+++++.+ ++..... .+..+. ||||| .++++...++
T Consensus 216 ---~----~~~i~~~d~~~~~~~-~~~~~~~-------------------~~~~~~~~~~~~~~~spdg-~~~~~~~~~g 267 (582)
T 3o4h_A 216 ---R----EARLVTVDPRDGSVE-DLELPSK-------------------DFSSYRPTAITWLGYLPDG-RLAVVARREG 267 (582)
T ss_dssp ---S----CEEEEEECTTTCCEE-ECCCSCS-------------------HHHHHCCSEEEEEEECTTS-CEEEEEEETT
T ss_pred ---C----eeEEEEEcCCCCcEE-EccCCCc-------------------ChhhhhhccccceeEcCCC-cEEEEEEcCC
Confidence 1 357999999887754 2221100 112334 99999 6888888888
Q ss_pred eeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhh
Q 004149 412 SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 491 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (771)
...||.+ |+..+.. .+.+....++ ++ .++++.++..+|+++|+.+..+ + + ..+ .+++...
T Consensus 268 ~~~l~~~----g~~~~~~--~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~-~----~--~~l-----~~~~~~~ 327 (582)
T 3o4h_A 268 RSAVFID----GERVEAP--QGNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE-P----L--LEG-----GLPEDLR 327 (582)
T ss_dssp EEEEEET----TEEECCC--SSEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC-E----E--ECC-----CCCHHHH
T ss_pred cEEEEEE----CCeeccC--CCceEEEEec-CC-EEEEEEcCCCCCCeEEEEcCCC-c----e--EEE-----ecCCccc
Confidence 8888876 5555422 2334445677 55 5667888899999999987543 1 1 111 1111000
Q ss_pred hccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEE
Q 004149 492 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI 571 (771)
Q Consensus 492 ~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~ 571 (771)
.... .... .++...+|.+++++++.|++.. .+.|+||++||+++......|...++.|+++||.|++
T Consensus 328 --~~~~--~~~~-------~~~~~~~g~~i~~~~~~p~~~~--~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~ 394 (582)
T 3o4h_A 328 --RSIA--GSRL-------VWVESFDGSRVPTYVLESGRAP--TPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVM 394 (582)
T ss_dssp --HTEE--EEEE-------EEEECTTSCEEEEEEEEETTSC--SSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEE
T ss_pred --cccC--cceE-------EEEECCCCCEEEEEEEcCCCCC--CCCcEEEEECCCcccccccccCHHHHHHHhCCCEEEE
Confidence 0010 1111 2445567889999999998643 3789999999988776666788899999999999999
Q ss_pred ECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 572 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 572 ~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
+|+||++++|.++.......++...++|+.++++++.+++.++ +++|+|||+||++++.++.++|++++++|+.+|+.
T Consensus 395 ~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 472 (582)
T 3o4h_A 395 PNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVV 472 (582)
T ss_dssp ECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCC
T ss_pred eccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 9999999999998877777777788999999999999987666 99999999999999999999999999999999999
Q ss_pred chhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 652 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
++..+....+.....+.+.+ .+ ...+.+...+|+..+.++++|+|++||++|.++|++++++++++|+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 540 (582)
T 3o4h_A 473 DWEEMYELSDAAFRNFIEQL--------TG----GSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELL 540 (582)
T ss_dssp CHHHHHHTCCHHHHHHHHHH--------TT----TCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHH
T ss_pred CHHHHhhcccchhHHHHHHH--------cC----cCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHHHHH
Confidence 88766544332210011111 11 3456678889999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+.|++++++++|+++|.+..++...++++.+.+||+++|+
T Consensus 541 ~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~l~ 580 (582)
T 3o4h_A 541 ARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 580 (582)
T ss_dssp HTTCCEEEEEETTCCSSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988666777899999999999985
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-53 Score=497.38 Aligned_cols=616 Identities=16% Similarity=0.171 Sum_probs=414.8
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.+..||||++|+|........+......++++++.++ +.++++... .....+..++|||||++|||+++. +
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~--~~~~~~~~~~~SPdG~~la~~~~~-----~ 135 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPE--VSNAKLQYAGWGPKGQQLIFIFEN-----N 135 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTT--CCSCCCSBCCBCSSTTCEEEEETT-----E
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCCC--ceEeccCCc--cccccccccEECCCCCEEEEEECC-----e
Confidence 4556889999999876443333334578888887443 334454322 111226679999999999999863 4
Q ss_pred EEEEe-cCCcceEEEecCCc-c-----cccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004149 126 QFELW-SQSQLEKEFHVPQT-V-----HGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~-~-----~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
++.++ .+++.++++..... . .+.+|.++ ....++|||||++|+|.+.+.... ..+........ .
T Consensus 136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~-~~~~~~~~~~~-----~ 209 (723)
T 1xfd_A 136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV-PIMELPTYTGS-----I 209 (723)
T ss_dssp EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS-CEEEECCCSSS-----S
T ss_pred EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc-ceEEeeccCCc-----C
Confidence 77777 56677777654211 1 11111111 124799999999999998654321 11111100000 0
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCC------CCccceEEEecCCCCCccEEEEEeecCcce
Q 004149 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPK------SLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
......+.|.+++ .. .....|++||+.+++. +.+. .. ...+..++|||||+. |++.+.+..
T Consensus 210 ~~~~~~~~~~~~G-~~---~~~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~-- 277 (723)
T 1xfd_A 210 YPTVKPYHYPKAG-SE---NPSISLHVIGLNGPTHDLEMM--PPDDPRMREYYITMVKWATSTKV----AVTWLNRAQ-- 277 (723)
T ss_dssp SCCCEEEECCBTT-SC---CCEEEEEEEESSSSCCCEECC--CCCCGGGSSEEEEEEEESSSSEE----EEEEEETTS--
T ss_pred CCcceeccCCCCC-CC---CCeeEEEEEECCCCceeEEee--CCccCCCccceeEEEEEeCCCeE----EEEEEcCCC--
Confidence 1112233444442 21 2345899999999884 6662 22 345678999999997 877654321
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--Cccc----cceeecCCCCEEEEE-ecCCCCC
Q 004149 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSA----FFPRFSPDGKFLVFL-SAKSSVD 341 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~~~~----~~p~~SpDG~~l~f~-~~~~~~~ 341 (771)
....|+++|+ .+++.+.+... ...+ ..|+|||||++|+|. +..+
T Consensus 278 ---------~~~~i~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~--- 328 (723)
T 1xfd_A 278 ---------NVSILTLCDA-----------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ--- 328 (723)
T ss_dssp ---------CEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC---
T ss_pred ---------CeEEEEEEeC-----------------CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc---
Confidence 2247999998 77776655322 1222 489999999999998 4433
Q ss_pred CCCccccccceeee-cCCCC---CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC--CeeEE
Q 004149 342 SGAHSATDSLHRID-WPTNG---NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVI 415 (771)
Q Consensus 342 ~g~~~~~~~l~~~d-~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~l 415 (771)
|.+....+||++| ..++. .+.++.+...+ ...++|||||+.|+|.+..+ +..+|
T Consensus 329 -~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 329 -GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV-------------------TKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp -SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE-------------------EEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred -CCCcceeEEEEEeccCCCCccceeEeecCCeEE-------------------EeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 3223356899999 45555 44554322111 11257999999999888765 67889
Q ss_pred EEEECCCC-cEEEecCC---CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhh
Q 004149 416 ISVNVSSG-ELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 491 (771)
Q Consensus 416 ~~~d~~tg-~~~~l~~~---~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (771)
|.++..++ +.++|+.. ...+....||+||+.+++.+++++.|..+++ +...+ .++.+ + +.++.+.
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~---~~~~~--~-----~~~~~~~ 457 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDK---KKMFD--L-----ETNEHVK 457 (723)
T ss_dssp EEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE-ETTTC---CEEEE--E-----ECCHHHH
T ss_pred EEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE-ECCCC---CEEEE--e-----ccChhhh
Confidence 99998765 45666642 3345567899999999999999999987665 43222 22211 1 1122222
Q ss_pred hccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcc--hHHHHHHHHCCcE
Q 004149 492 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSY--SKSLAFLSSVGYS 568 (771)
Q Consensus 492 ~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~--~~~~~~la~~G~~ 568 (771)
..+....+. +.+. +.+...+| ++.++++.|+++...+++|+||++||+++... ...| ......|+++||+
T Consensus 458 ~~~~~~~~~----~~~~--~~~~~~~g-~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~ 530 (723)
T 1xfd_A 458 KAINDRQMP----KVEY--RDIEIDDY-NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAV 530 (723)
T ss_dssp HHHHTSCCC----BCCB--CCEEETTE-EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCE
T ss_pred hhhhhccCC----CceE--EEEEcCCc-eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccCccccccHHHHHhhcCCEE
Confidence 222222221 1111 23445567 99999999997666788999999999887632 2223 3556677889999
Q ss_pred EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC----CCceeEE
Q 004149 569 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAA 644 (771)
Q Consensus 569 V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~a~ 644 (771)
|+++|+||++++|..+.......++...++|+.++++++.+++.+|.+||+|+||||||++++.++.++ |++++++
T Consensus 531 vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~ 610 (723)
T 1xfd_A 531 VVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCG 610 (723)
T ss_dssp EECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEE
T ss_pred EEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEE
Confidence 999999999988887766556666667799999999999988778899999999999999999999999 9999999
Q ss_pred EecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCC-CcEEEEeeCCCCccCcHHH
Q 004149 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 645 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~ 723 (771)
|+.+|+.++..+ ...+.+.+.. .+ ......+...++...+.+++ +|+||+||++|.++|++++
T Consensus 611 v~~~~~~~~~~~-------~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~ 674 (723)
T 1xfd_A 611 SALSPITDFKLY-------ASAFSERYLG--------LH-GLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHT 674 (723)
T ss_dssp EEESCCCCTTSS-------BHHHHHHHHC--------CC-SSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHH
T ss_pred EEccCCcchHHh-------hhhccHhhcC--------Cc-cCChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcCHhHH
Confidence 999998765422 1111111100 00 01112344556777888999 7999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++++++|++.+.+++++++|+++|++...+...++++.+.+||+++|+
T Consensus 675 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 675 AELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp HHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999986566667889999999999875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-51 Score=474.82 Aligned_cols=592 Identities=13% Similarity=0.133 Sum_probs=415.4
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecC-Cccc-cccceEEEeCCCCCeEEEEecCCCC-CCeE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAP-FPVE-MTGASAVVPSPSGSKLLVVRNPENE-SPIQ 126 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~-~~~~~~~~~SPdG~~la~~~~~~~~-~~~~ 126 (771)
++||++++|.....+ .....+|+.+. .+++.+.|.... +... ......++|||||++|||.....+. ..++
T Consensus 80 ~~dG~~~~~~~~~~~----~~~~~l~~~~~--~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i 153 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGL----QNQRVLYVQDS--LEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTI 153 (710)
T ss_dssp EEETTEEEEEEECSS----CSSCEEEEESS--TTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEE
T ss_pred EEECCEEEEEEEcCC----ceEEEEEEEcC--CCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEE
Confidence 369999999986432 34457888654 333444343221 1110 0136789999999999999886532 2377
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
++++ .+++..+.+...... .+++|||||+.|+|.+........ .
T Consensus 154 ~v~d~~tg~~~~~~~~~~~~----------~~~~wspDg~~l~~~~~~~~~~~~--------~----------------- 198 (710)
T 2xdw_A 154 KFMKVDGAKELPDVLERVKF----------SCMAWTHDGKGMFYNAYPQQDGKS--------D----------------- 198 (710)
T ss_dssp EEEETTTTEEEEEEEEEECS----------CCEEECTTSSEEEEEECCCCSSCC--------S-----------------
T ss_pred EEEECCCCCCCcccccCccc----------ceEEEEeCCCEEEEEEECCccccc--------c-----------------
Confidence 7777 566655543322122 589999999999999865431100 0
Q ss_pred CCcCcccCCccCceEEEEEccCCcee--ec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCcee
Q 004149 206 EDWGETYAGKRQPSLFVININSGEVQ--AV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~--~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
+..-.......||++++.+++.. .+ ...........+.|||||+. |++.+..... ...+|
T Consensus 199 ---~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~~----------~~~~l 261 (710)
T 2xdw_A 199 ---GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY----VLLSIREGCD----------PVNRL 261 (710)
T ss_dssp ---SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECSSS----------SCCEE
T ss_pred ---ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE----EEEEEEccCC----------CccEE
Confidence 00000113468999999887632 22 11111223568899999999 9998743211 14589
Q ss_pred EEEecccccchhhhhhhhcCCCCC------C--cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004149 283 YAVRVSLYKSEASELELKESSSED------L--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~------~--~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
|++|+ .+ + ..++|+....... ..|+|||++|+|.++.. ....+|+++
T Consensus 262 ~~~d~-----------------~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~-------~~~~~l~~~ 316 (710)
T 2xdw_A 262 WYCDL-----------------QQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRH-------SPNYRLINI 316 (710)
T ss_dssp EEEEG-----------------GGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTT-------CTTCEEEEE
T ss_pred EEEEC-----------------cccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCC-------CCCCEEEEE
Confidence 99998 43 3 4677776554443 46999999999998764 235689999
Q ss_pred ecCCCCC---CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecC
Q 004149 355 DWPTNGN---FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITP 430 (771)
Q Consensus 355 d~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~ 430 (771)
|+.+++. +.+..... . ..+..+.|+++ ..|+++...++..+|+.+++.+|+ ++.|..
T Consensus 317 d~~~~~~~~~~~l~~~~~-----------~-------~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~ 377 (710)
T 2xdw_A 317 DFTDPEESKWKVLVPEHE-----------K-------DVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLKIFPL 377 (710)
T ss_dssp ETTSCCGGGCEEEECCCS-----------S-------CEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEEEECC
T ss_pred eCCCCCcccceeccCCCC-----------C-------CeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEEecCC
Confidence 9887642 11211110 0 01234678854 468888888888999999996665 567766
Q ss_pred CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcc
Q 004149 431 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVS 510 (771)
Q Consensus 431 ~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~ 510 (771)
..+.+....++++++.+++..++.++|.++|++++.+++... ..++.. ++..++ ...+....+
T Consensus 378 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~-~~l~~~--~~~~~~--------~~~~~~~~~------ 440 (710)
T 2xdw_A 378 EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEP-RVFREV--TVKGID--------ASDYQTVQI------ 440 (710)
T ss_dssp CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCC-EEEEEC--CCTTCC--------GGGEEEEEE------
T ss_pred CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccce-EEeeec--ccCCcC--------ccccEEEEE------
Confidence 544344456678999999999999999999999986543101 111111 111121 112222222
Q ss_pred cccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCC
Q 004149 511 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 511 ~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
.+...+|.+++++++.|++....++.|+||++||+++......|......|++ +||+|+++|+||++++|..|.....
T Consensus 441 -~~~~~dg~~i~~~~~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~ 519 (710)
T 2xdw_A 441 -FYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGI 519 (710)
T ss_dssp -EEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTS
T ss_pred -EEEcCCCCEEEEEEEecCCCCCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhh
Confidence 44566789999999999976566789999999999877666667776667777 9999999999999999998877655
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.......++|+.+++++|++++.++++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........| ..
T Consensus 520 ~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~ 597 (710)
T 2xdw_A 520 LANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW--TT 597 (710)
T ss_dssp GGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGG--HH
T ss_pred hhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhH--HH
Confidence 5556667899999999999998889999999999999999999999999999999999999887655432211111 12
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCcccccc-----CCCC-cEEEEeeCCCCccCcHHHHHHHHHHHhC-------CCC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHIS-----KVKT-PTIFLLGAQDLRVPVSNGLQYARALREK-------GVE 736 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-----~i~~-P~Lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~ 736 (771)
.++. ....+....+...+|+.++. ++++ |+||+||++|.+||+.++.+++++|+.. +.+
T Consensus 598 ~~g~--------~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 669 (710)
T 2xdw_A 598 DYGC--------SDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNP 669 (710)
T ss_dssp HHCC--------TTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSC
T ss_pred hCCC--------CCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcC
Confidence 2221 12345566777889999998 7886 9999999999999999999999999988 889
Q ss_pred EEEEEeCCCCccCCCCC-ChHHHHHHHHHHHHHHhC
Q 004149 737 TKVIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~-~~~~~~~~i~~wl~~~l~ 771 (771)
+++++++++||++..+. ...+.+..+.+||.++|+
T Consensus 670 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 705 (710)
T 2xdw_A 670 LLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705 (710)
T ss_dssp EEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999987643 346788899999999874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=471.27 Aligned_cols=586 Identities=13% Similarity=0.135 Sum_probs=414.7
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecC-Ccc-ccccceEEEeCCCCCeEEEEecCCC-CCC
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAP-FPV-EMTGASAVVPSPSGSKLLVVRNPEN-ESP 124 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~-~~~~~~~~~~SPdG~~la~~~~~~~-~~~ 124 (771)
..++||++++|.+.... .....||+.+. .+++.++|+... +.. .......++|||||++|||.....+ +..
T Consensus 74 ~p~~dG~~~~~~~~~~~----~~~~~l~~~~~--~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKD----KEKAILYWRQG--ESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEA 147 (695)
T ss_dssp CCEEETTEEEEEEECTT----CSSCEEEEEES--TTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCC
T ss_pred CCEEECCEEEEEEEcCC----CeEEEEEEEcC--CCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceE
Confidence 33479999999886532 33567888664 344566666432 110 0124678999999999999988653 346
Q ss_pred eEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004149 125 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
.+++++ .+++..+...+... .+..++|||||+.|+|.+.+......
T Consensus 148 ~i~v~dl~tg~~~~~~~~~~~---------~~~~~~wspDg~~l~~~~~d~~~~~~------------------------ 194 (695)
T 2bkl_A 148 VLHVIDVDSGEWSKVDVIEGG---------KYATPKWTPDSKGFYYEWLPTDPSIK------------------------ 194 (695)
T ss_dssp EEEEEETTTCCBCSSCCBSCC---------TTCCCEECTTSSEEEEEECCCCTTSC------------------------
T ss_pred EEEEEECCCCCCcCCcccCcc---------cccceEEecCCCEEEEEEecCCCCCc------------------------
Confidence 777777 55543211111111 12589999999999999865421100
Q ss_pred ccCCcCcccCCccCceEEEEEccCCce--eeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 204 WEEDWGETYAGKRQPSLFVININSGEV--QAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
.-......+||++++.++.. +.+...+ .......+.|||||+. |++.++... ...
T Consensus 195 -------~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~-----------~~~ 252 (695)
T 2bkl_A 195 -------VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY----LFVYILRGW-----------SEN 252 (695)
T ss_dssp -------GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC----EEEEEEETT-----------TEE
T ss_pred -------cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE----EEEEEeCCC-----------Cce
Confidence 00011346899999998873 3331112 2235668899999999 999875331 224
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
+||+++. .+++.++|+........+.| |||+ |++.++.. .....|+++|+.+++
T Consensus 253 ~l~~~~~-----------------~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~-------~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 253 DVYWKRP-----------------GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEG-------APRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEECT-----------------TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTT-------CTTCEEEEEBTTBCS
T ss_pred EEEEEcC-----------------CCCceEEeecCCCceEEEEe-cCCc-EEEEECCC-------CCCCEEEEEeCCCCC
Confidence 8999986 66778888877666777877 7888 88887653 235689999987765
Q ss_pred C---CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCce
Q 004149 361 N---FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFS 436 (771)
Q Consensus 361 ~---~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~ 436 (771)
. +.+.... .. ..+..++|+ +..|+++...++..+||.++++++..+.+... .+.+.
T Consensus 307 ~~~~~~l~~~~-----------~~-------~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~ 366 (695)
T 2bkl_A 307 RASWKEIVPED-----------SS-------ASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAAS 366 (695)
T ss_dssp GGGCEEEECCC-----------SS-------CEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEEC
T ss_pred ccCCeEEecCC-----------CC-------CeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEE
Confidence 3 1111110 00 012345666 44688888888999999999876667777644 33334
Q ss_pred eeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccC
Q 004149 437 WSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKG 516 (771)
Q Consensus 437 ~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 516 (771)
...++++++.+++..++.++|.++|+.++.+++ .+ .++... . .++ ...+....+ .+...
T Consensus 367 ~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~--~~-~l~~~~--~-~~~--------~~~~~~~~~-------~~~~~ 425 (695)
T 2bkl_A 367 NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK--SE-LWAKVD--V-PMN--------PEQYQVEQV-------FYASK 425 (695)
T ss_dssp CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC--EE-EEEECC--C-SSC--------GGGEEEEEE-------EEECT
T ss_pred EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc--EE-EEecCC--C-CCC--------HHHCeEEEE-------EEECC
Confidence 456778999999999999999999999986553 11 111111 0 111 111222222 44566
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++.++++.|++....++.|+||++|||++......|......|+++||+|+++|+||++++|..|............
T Consensus 426 dg~~i~~~~~~p~~~~~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~ 505 (695)
T 2bkl_A 426 DGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNV 505 (695)
T ss_dssp TSCEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHH
T ss_pred CCCEEEEEEEECCCCCCCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCc
Confidence 78999999999997656678999999999887765556766677788999999999999999999998776555555667
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
++|+.+++++|++++.++++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+...... ......++.
T Consensus 506 ~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~--~~~~~~~g~--- 580 (695)
T 2bkl_A 506 FDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSG--RTWIPEYGT--- 580 (695)
T ss_dssp HHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTG--GGGHHHHCC---
T ss_pred HHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCC--cchHHHhCC---
Confidence 899999999999998889999999999999999999999999999999999999987654332211 111122221
Q ss_pred CcCCCCCChhhHHHHhhcCccccccCCC--CcEEEEeeCCCCccCcHHHHHHHHHHHh---CCCCEEEEEeCCCCccCCC
Q 004149 677 DSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~ 751 (771)
....+....+...+|+.++.+++ +|+||+||++|.+||+.++.+++++|++ .|.++++++++++||++..
T Consensus 581 -----~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~ 655 (695)
T 2bkl_A 581 -----AEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGAD 655 (695)
T ss_dssp -----TTSHHHHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCS
T ss_pred -----CCCHHHHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCC
Confidence 11234556677889999998876 7999999999999999999999999998 6789999999999999864
Q ss_pred C-CChHHHHHHHHHHHHHHhC
Q 004149 752 P-QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ~-~~~~~~~~~i~~wl~~~l~ 771 (771)
+ ....+.+..+.+||.++|+
T Consensus 656 ~~~~~~~~~~~~~~fl~~~l~ 676 (695)
T 2bkl_A 656 QVAKAIESSVDLYSFLFQVLD 676 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHcC
Confidence 3 3355678889999999874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=477.14 Aligned_cols=598 Identities=18% Similarity=0.224 Sum_probs=410.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCC-CCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCC
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 124 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 124 (771)
.+..||||++|+|... ..++++++.+.. ...++++... ..+..++|||||++|||+++.
T Consensus 113 ~~~~SpDg~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~SPDG~~la~~~~~----- 172 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGE-----GFATDAKLSPKGGFVSFIRGR----- 172 (741)
T ss_dssp CCEECTTSSEEEEEET----------TEEEEEESSSCSTTSCCBCCCSS-----SCEEEEEECTTSSEEEEEETT-----
T ss_pred eeEECCCCCEEEEEeC----------CcEEEEECCCCCcceEEEcccCC-----cccccccCCCCCCEEEEEeCC-----
Confidence 4456889999999863 478888774331 0445555443 457889999999999999753
Q ss_pred eEEEEe-cCCcceEEEecCCc-c----cccccCC--CcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCC
Q 004149 125 IQFELW-SQSQLEKEFHVPQT-V----HGSVYAD--GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 196 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~-~----~g~~~~~--~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (771)
+++.++ .+++..+++..... + ...++.+ .....++|||||++|+|.+.+..... .+... ..... .
T Consensus 173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~-~~~~~-----~~~p~-~ 245 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP-VQKRY-----EVYAD-R 245 (741)
T ss_dssp EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC-EEEEE-----EECSS-C
T ss_pred cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc-eEecC-----CCCCC-c
Confidence 477777 55555554432211 0 0000000 01257999999999999876542211 00000 00000 0
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccC-CceeeccCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004149 197 SWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
.....+.|... |+ ......|+++|+++ ++.+.+... .....+..++| |||+. |++.+....
T Consensus 246 ~~~~~~~~~~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~----l~~~~~~~~-------- 308 (741)
T 2ecf_A 246 TDVIEQRYPAA-GD---ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH----LSFQRQSRD-------- 308 (741)
T ss_dssp EEEEEEECCBT-TS---CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE----EEEEEEETT--------
T ss_pred ccceEeecCCC-CC---CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE----EEEEEeccc--------
Confidence 00001111111 11 11235899999999 988777311 23446778999 99999 998874221
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc-----cccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004149 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-----~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
.....|+++|+ .+++.+.+..... .+..+.|||||+ ++|.+..+ | ..
T Consensus 309 --~~~~~i~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~----g----~~ 360 (741)
T 2ecf_A 309 --QKKLDLVEVTL-----------------ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERT----G----FQ 360 (741)
T ss_dssp --SSEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTT----S----SC
T ss_pred --CCeEEEEEEEC-----------------CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCC----C----cc
Confidence 12348999998 7777666543322 346899999999 66766553 2 46
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC-ccccCCCEEEEEeeeCC--eeEEEEEECCCCcEE
Q 004149 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN-PWLSDGCTMLLSSIWGS--SQVIISVNVSSGELL 426 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~-~~s~dg~~l~~~~~~~~--~~~l~~~d~~tg~~~ 426 (771)
+||.+|+.++ .+.++..... +..+ .|||||+.|++.+..++ ..+||.++..++..+
T Consensus 361 ~l~~~~~~~~-~~~l~~~~~~--------------------v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 361 HLYRIDSKGK-AAALTHGNWS--------------------VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp EEEEECSSSC-EEESCCSSSC--------------------EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred EEEEEcCCCC-eeeeeecceE--------------------EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 7999987654 4444332211 2233 59999999998887665 778999998777788
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhh-ccccC--cc-eee
Q 004149 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKS-LLSSR--QF-SIM 502 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~-~~~ 502 (771)
+|+... ......||+||+.|++..+++..|+++++.+...+. +. .+. ..+..+.. .+... .+ ...
T Consensus 420 ~l~~~~-~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~----~~--~l~----~~~~~~~~~~~~~~~~~~~~~~ 488 (741)
T 2ecf_A 420 RLSKAP-GMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK----IA--TLV----ENDLADPKHPYARYREAQRPVE 488 (741)
T ss_dssp ECCCSC-SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE----EE--CSS----CCCSSSTTSTTHHHHTTCCCEE
T ss_pred ecccCC-CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe----EE--Eec----cCcccccccchhhhhccCCCcE
Confidence 888733 345678999999999999999999999998864321 11 111 10100000 01111 11 111
Q ss_pred eecccCcccccccCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-Ccch-----HHHHHHHHCCcEEEEECCC
Q 004149 503 KIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYS-----KSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 503 ~i~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~-----~~~~~la~~G~~V~~~d~r 575 (771)
.+ .+...+| .+++++++.|++..+.++.|+||++||++..... ..|. ..++.|+++||.|+++|+|
T Consensus 489 ~~-------~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 561 (741)
T 2ecf_A 489 FG-------TLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNR 561 (741)
T ss_dssp EE-------EEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCT
T ss_pred EE-------EEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCcccccccccccchhHHHHHHHhCCCEEEEEecC
Confidence 12 3445678 8999999999876556778999999998876421 2343 5788899999999999999
Q ss_pred CCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh
Q 004149 576 GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 576 G~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 655 (771)
|.++++..+.......++...++|+.++++++.+++.++.++|+|+||||||++++.++.++|++++++|+.+|+.++..
T Consensus 562 G~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 641 (741)
T 2ecf_A 562 GTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGL 641 (741)
T ss_dssp TCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGG
T ss_pred CCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhh
Confidence 99888887776666667677799999999999998778889999999999999999999999999999999999887542
Q ss_pred hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004149 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
+. ..+.+.+ ... .......+...+|...+.++++|+|++||++|.++|++++.+++++|+..++
T Consensus 642 ~~-------~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 705 (741)
T 2ecf_A 642 YD-------SHYTERY--------MDL-PARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQ 705 (741)
T ss_dssp SB-------HHHHHHH--------HCC-TGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHHHTTC
T ss_pred hc-------cccchhh--------cCC-cccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCCHHHHHHHHHHHHHCCC
Confidence 21 0111111 111 1234556667889999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+++++++++++|.+..... .++++.+.+||+++|+
T Consensus 706 ~~~~~~~~~~~H~~~~~~~-~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 706 PFELMTYPGAKHGLSGADA-LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp CCEEEEETTCCSSCCHHHH-HHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCCCCCch-hHHHHHHHHHHHHhcC
Confidence 9999999999999874433 6788999999999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=474.73 Aligned_cols=607 Identities=14% Similarity=0.143 Sum_probs=405.3
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc---cceeecCCccccccceEEEeCCCCCeEEEEecCCC
Q 004149 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS---VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 121 (771)
..+..||||++|+|.......-+......++++++.++ +. .+++ ..+..++|||||++|||+++.
T Consensus 63 ~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~~~~l~--------~~~~~~~~SPDG~~la~~~~~-- 130 (719)
T 1z68_A 63 SNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVRGNELP--------RPIQYLCWSPVGSKLAYVYQN-- 130 (719)
T ss_dssp SEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCCC--------SSBCCEEECSSTTCEEEEETT--
T ss_pred eeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC--ccccceecC--------cccccceECCCCCEEEEEECC--
Confidence 34566899999999876432111123468888876433 33 3332 346789999999999999753
Q ss_pred CCCeEEEEe-cCCcceEEEecCCc------ccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004149 122 ESPIQFELW-SQSQLEKEFHVPQT------VHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~------~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
.++..+ .++..++++..... ....+|.++ ...+++|||||++|||.+.+..... .+........
T Consensus 131 ---~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~-~~~~~~~~~~-- 204 (719)
T 1z68_A 131 ---NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP-VIAYSYYGDE-- 204 (719)
T ss_dssp ---EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC-EEEEEECCSS--
T ss_pred ---eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc-eEEeeccCCC--
Confidence 366665 45555555432110 001111111 1148999999999999886542211 1110000000
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee---eccC----CCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~----~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
.......+.|... |. ......|++||+++++.. .+.. ......+..++|||||+ ++|+...
T Consensus 205 ---~~~~~~~~~yp~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-----~~~~~~~ 272 (719)
T 1z68_A 205 ---QYPRTINIPYPKA-GA---KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-----VCLQWLK 272 (719)
T ss_dssp ---SSCEEEEEECCBT-TS---CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-----EEEEEEE
T ss_pred ---CCccceeecCCCC-CC---CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-----EEEEEec
Confidence 0000011222211 11 113358999999998753 4410 11334567899999965 6665321
Q ss_pred CcceeeeeeeeccCCceeEEEe----cccccchhhhhhhhcCCCCCCcceecC-----CCCcccc-----ceeecCCCCE
Q 004149 265 SETRKLGIKYCYNRPCALYAVR----VSLYKSEASELELKESSSEDLPVVNLT-----ESISSAF-----FPRFSPDGKF 330 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~lt-----~~~~~~~-----~p~~SpDG~~ 330 (771)
.. .....|+++| + .+++.+.++ .+...+. .|.|||||+.
T Consensus 273 ~~----------~~~~~l~~~d~~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 273 RV----------QNVSVLSICDFREDW-----------------QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp SS----------TTEEEEEEEEECSSS-----------------SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred cc----------cCeEEEEEEcccCCC-----------------CCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence 11 1223799999 6 667766666 2233344 8999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 409 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~- 409 (771)
|+|..... .+..+|+++|+.+++.+.++....+ +..+.++ ||+.|+|++..
T Consensus 326 l~~~~~~~-------~g~~~l~~~~~~~~~~~~lt~~~~~--------------------v~~~~~~-d~~~i~~~~~~~ 377 (719)
T 1z68_A 326 YYKIFSDK-------DGYKHIHYIKDTVENAIQITSGKWE--------------------AINIFRV-TQDSLFYSSNEF 377 (719)
T ss_dssp EEEEEECT-------TSCEEEEEESSCSTTCEECSCSSSC--------------------EEEEEEE-CSSEEEEEESCG
T ss_pred EEEEEEcc-------CCceEEEEEECCCCceEecccCceE--------------------EEEEEEE-eCCEEEEEEecC
Confidence 99965543 1246799999988776555433211 1123455 89999998876
Q ss_pred ---CCeeEEEEEECCCC--cEEEecCC----CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccC
Q 004149 410 ---GSSQVIISVNVSSG--ELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVS 480 (771)
Q Consensus 410 ---~~~~~l~~~d~~tg--~~~~l~~~----~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~ 480 (771)
.+..+||.+++++| +.++++.. ...+....|++|++.+++.+++++.| .+++.++.+++ .+.
T Consensus 378 ~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~---~~~----- 448 (719)
T 1z68_A 378 EEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQ---EIK----- 448 (719)
T ss_dssp GGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCC---EEE-----
T ss_pred CCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCC---EEE-----
Confidence 57789999998776 46777642 22345578999999999999999888 57777765442 111
Q ss_pred CCCCCCchhhhhccccCcc-eeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcch-H
Q 004149 481 SPISRCPEKVKSLLSSRQF-SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-K 557 (771)
Q Consensus 481 ~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~-~ 557 (771)
+.+.++.+...+....+ ....+ ++...+ .+++++++.|+++.+.++.|+||++||++.... ...|. .
T Consensus 449 --~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~l~~~~~~P~~~~~~~~~p~vl~~hG~~~~~~~~~~~~~~ 518 (719)
T 1z68_A 449 --ILEENKELENALKNIQLPKEEIK-------KLEVDE-ITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVN 518 (719)
T ss_dssp --EEECCHHHHHHTTSBCCCEEEEE-------EEEETT-EEEEEEEEECTTCCSSSCEEEEEEECCCTTBCCCCCCCCCC
T ss_pred --EeecchhhhhhhccccCCceEEE-------EEecCC-eEEEEEEEeCCCCCCCCCccEEEEECCCCCcCcccccchhh
Confidence 11223333222333222 11112 233344 889999999987666778999999999887643 22332 2
Q ss_pred HHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh
Q 004149 558 SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 558 ~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
....| +++||.|+++|+||.++++..+.......++...++|+.++++++.+++.+|++|++|+||||||++++.++.+
T Consensus 519 ~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 598 (719)
T 1z68_A 519 WISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALAS 598 (719)
T ss_dssp HHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTT
T ss_pred HHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHh
Confidence 34444 57999999999999999888877666667777789999999999999877889999999999999999999999
Q ss_pred CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCC-ChhhHHHHhhcCccccccCCCC-cEEEEeeCC
Q 004149 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKT-PTIFLLGAQ 714 (771)
Q Consensus 637 ~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~-P~Lii~G~~ 714 (771)
+|++++++|+.+|+.++..+. ..+.+.+. +.+ ..+....+...+|...+.++++ |+||+||++
T Consensus 599 ~p~~~~~~v~~~~~~~~~~~~-------~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~ 663 (719)
T 1z68_A 599 GTGLFKCGIAVAPVSSWEYYA-------SVYTERFM--------GLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTA 663 (719)
T ss_dssp SSSCCSEEEEESCCCCTTTSB-------HHHHHHHH--------CCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEETT
T ss_pred CCCceEEEEEcCCccChHHhc-------cccchhhc--------CCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeCC
Confidence 999999999999988754320 11111110 111 1233456677788888999988 899999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|.++|++++.+++++|++.+++++++++++++|.+ ..+...++++.+.+||+++|+
T Consensus 664 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 664 DDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp CSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999998 445567889999999999985
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=465.65 Aligned_cols=587 Identities=14% Similarity=0.125 Sum_probs=402.6
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeec-CCCCccceeecC-Ccccc-ccceEEEeCCCCCeEEEEecCCCC-
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISK-ENENSVTFQWAP-FPVEM-TGASAVVPSPSGSKLLVVRNPENE- 122 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lt~~~-~~~~~-~~~~~~~~SPdG~~la~~~~~~~~- 122 (771)
+..++||++++|...... .....+|+.+... ++++..+|.... +.... .....++|||||++|||.+...+.
T Consensus 112 ~~p~pdG~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e 187 (741)
T 1yr2_A 112 GLPQRRGASVFYSWNSGL----MNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD 187 (741)
T ss_dssp CCCEEETTEEEEEEECSS----CSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS
T ss_pred CCCEEECCEEEEEEEcCC----CeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc
Confidence 334579999999886432 3356788866421 033445543322 11110 246789999999999999876532
Q ss_pred CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004149 123 SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 123 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
..++++++ .+++.......... +..++|||| +.|+|.+.+.....
T Consensus 188 ~~~i~v~dl~tg~~~~~~~~~~~----------~~~~~wspD-~~l~~~~~~~~~~~----------------------- 233 (741)
T 1yr2_A 188 WRTVKFVGVADGKPLADELKWVK----------FSGLAWLGN-DALLYSRFAEPKEG----------------------- 233 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEEEE----------SCCCEESTT-SEEEEEECCCC--------------------------
T ss_pred eEEEEEEECCCCCCCCccCCCce----------eccEEEECC-CEEEEEEecCcccc-----------------------
Confidence 25677777 56655433211111 258899999 99999875542100
Q ss_pred ccccCCcCcccCCccCceEEEEEccCCce--eeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004149 202 GDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
++.........||++++.++.. +.+...+. ......+.|||||+. |+|.+.... +.
T Consensus 234 -------~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~----------~~ 292 (741)
T 1yr2_A 234 -------QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW----VVITSSEGT----------DP 292 (741)
T ss_dssp ------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECTT----------CS
T ss_pred -------cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE----EEEEEEccC----------CC
Confidence 0000011246899999988763 23311112 123668899999999 999885331 12
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCC--c-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 279 PCALYAVRVSLYKSEASELELKESSSEDL--P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
..+||++|+ +++ + .++|+........+ ++|||++|+|.++.. ....+|+++|
T Consensus 293 ~~~l~~~d~-----------------~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~-------~~~~~l~~~d 347 (741)
T 1yr2_A 293 VNTVHVARV-----------------TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG-------APLKKIVRVD 347 (741)
T ss_dssp CCEEEEEEE-----------------ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT-------CTTCEEEEEE
T ss_pred cceEEEEEC-----------------CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC-------CCCCEEEEEe
Confidence 358999998 555 5 67777665555556 469999999999874 2356899999
Q ss_pred cCCCC--CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-C
Q 004149 356 WPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-E 432 (771)
Q Consensus 356 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~ 432 (771)
+.++. .+.+..... . .+..+.|+ +..|+++...++..+||.++++++..+.++.+ .
T Consensus 348 ~~~~~~~~~~l~~~~~-----------~--------~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 406 (741)
T 1yr2_A 348 LSGSTPRFDTVVPESK-----------D--------NLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGI 406 (741)
T ss_dssp CSSSSCEEEEEECCCS-----------S--------EEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSS
T ss_pred CCCCccccEEEecCCC-----------C--------eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCC
Confidence 87642 111111110 0 12234455 55788888889999999999877667777643 3
Q ss_pred CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccc
Q 004149 433 SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSAN 512 (771)
Q Consensus 433 ~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~ 512 (771)
+.+....++++++.+++..++.++|.++|+.++.+++ .+ .+..+...++ ...+....+ .
T Consensus 407 ~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~--~~----~l~~~~~~~~--------~~~~~~~~~-------~ 465 (741)
T 1yr2_A 407 GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK--TT----PWEPVHLTFD--------PADFRVEQV-------F 465 (741)
T ss_dssp CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE--EE----ECSCCCCSSC--------GGGEEEEEE-------E
T ss_pred eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc--EE----EEecCCCCCC--------hhHCEEEEE-------E
Confidence 3344556788999999999999999999999986543 11 1111111111 111222222 3
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|.+++++++.|++. .++.|+||++||+++......|......|+++||+|+++|+||++++|..|........
T Consensus 466 ~~~~dg~~i~~~~~~p~~~--~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~ 543 (741)
T 1yr2_A 466 YPSKDGTKVPMFIVRRKDA--KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDK 543 (741)
T ss_dssp EECTTSCEEEEEEEEETTC--CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGG
T ss_pred EEcCCCCEEEEEEEecCCC--CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhc
Confidence 4556789999999999854 56789999999998876666777777889999999999999999999998877655555
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
....++|+.+++++|++++.++++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........| ...++
T Consensus 544 ~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~~~g 621 (741)
T 1yr2_A 544 KQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYW--VDDYG 621 (741)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGG--HHHHC
T ss_pred CCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchh--HHHcC
Confidence 5567899999999999998889999999999999999999999999999999999999887654322211111 12222
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccC-CCC-cEEEEeeCCCCccCcHHHHHHHHHHHh---CCCCEEEEEeCCCCc
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISK-VKT-PTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVH 747 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~-P~Lii~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~~H 747 (771)
. ....+..+.+...+|+.++.+ +++ |+||+||++|.+||+.++.+++++|+. .|.++++++++++||
T Consensus 622 ~--------~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH 693 (741)
T 1yr2_A 622 Y--------PEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGH 693 (741)
T ss_dssp C--------TTSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC-----
T ss_pred C--------CCCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEeCCCCc
Confidence 1 112355667788899999987 884 999999999999999999999999999 888999999999999
Q ss_pred cCCCCC-ChHHHHHHHHHHHHHHhC
Q 004149 748 GIERPQ-SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~~-~~~~~~~~i~~wl~~~l~ 771 (771)
++..+. ...+.+..+.+||.++|+
T Consensus 694 ~~~~~~~~~~~~~~~~~~fl~~~l~ 718 (741)
T 1yr2_A 694 GSGKPIDKQIEETADVQAFLAHFTG 718 (741)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 986542 335778899999999874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=459.50 Aligned_cols=540 Identities=16% Similarity=0.141 Sum_probs=387.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCC-CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
....++|||||++|||..+..+. ...+++++ .+++....+. .... +.+++|| ||+.|+|.+.+....
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k---------~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVK---------FSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEE---------SCCCEEE-TTTEEEEEESSCCC-
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCce---------eccEEEe-CCCEEEEEEecCccc
Confidence 35678999999999999876532 35677777 5565443321 1110 1588999 999999998764210
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCC--CCccceEEEecCCCC
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK--SLSVGQVVWAPLNEG 253 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~--~~~~~~~~wspDg~~ 253 (771)
. +.-......+||++++.++.. +.+...+. ......+.|||||+.
T Consensus 199 ~-------------------------------~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~ 247 (693)
T 3iuj_A 199 S-------------------------------ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF 247 (693)
T ss_dssp -------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE
T ss_pred c-------------------------------cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE
Confidence 0 000001346899999987653 33311111 223457899999999
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cceecCCCCccccceeecCCCCEE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
|++.+.... ...+||++|+ +++ +.++|+........+ |++||++|
T Consensus 248 ----l~~~~~~~~-----------~~~~i~~~d~-----------------~~~~~~~~~l~~~~~~~~~~-~~~~g~~l 294 (693)
T 3iuj_A 248 ----LLISAANST-----------SGNRLYVKDL-----------------SQENAPLLTVQGDLDADVSL-VDNKGSTL 294 (693)
T ss_dssp ----EEEEEESSS-----------SCCEEEEEET-----------------TSTTCCCEEEECSSSSCEEE-EEEETTEE
T ss_pred ----EEEEEccCC-----------CCcEEEEEEC-----------------CCCCCceEEEeCCCCceEEE-EeccCCEE
Confidence 998874322 2248999998 444 667787766655555 89999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+|.++.+ ....+|+++|+.+++..... .+++ . .. .. . .|+++++.|++....++
T Consensus 295 ~~~t~~~-------~~~~~l~~~d~~~~~~~~~~----~l~~---~--~~--------~~-~-~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 295 YLLTNRD-------APNRRLVTVDAANPGPAHWR----DLIP---E--RQ--------QV-L-TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp EEEECTT-------CTTCEEEEEETTSCCGGGCE----EEEC---C--CS--------SC-E-EEEEETTEEEEEEEETT
T ss_pred EEEECCC-------CCCCEEEEEeCCCCCccccE----EEec---C--CC--------CE-E-EEEEECCEEEEEEEECC
Confidence 9999875 22468999999876541110 1111 0 00 01 1 79999999999998889
Q ss_pred eeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhh
Q 004149 412 SQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKV 490 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (771)
..+|+.++++++..+.+..+. +......++++++.+++..+++++|.++|++++.+++ .+ .++... ..+
T Consensus 349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~--~~-~l~~~~---~~~---- 418 (693)
T 3iuj_A 349 TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA--IS-LYRASA---APF---- 418 (693)
T ss_dssp EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC--EE-EEECCC---SSC----
T ss_pred eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe--EE-EEEeCC---CCc----
Confidence 899999999888888886543 2233345567899999999999999999999986543 11 111110 011
Q ss_pred hhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEE
Q 004149 491 KSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLL 570 (771)
Q Consensus 491 ~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~ 570 (771)
....+....+ .+...+|.+++++++.|++....++.|+||++|||++......|...+..|+++||+|+
T Consensus 419 ----~~~~~~~~~~-------~~~~~dg~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~ 487 (693)
T 3iuj_A 419 ----KPEDYVSEQR-------FYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYA 487 (693)
T ss_dssp ----CGGGEEEEEE-------EEECTTSCEEEEEEEEESSCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEE
T ss_pred ----ChhhCeeEEE-------EEecCCCcEEEEEEEecCCCCCCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEE
Confidence 1112223333 34556789999999999976667789999999999887666778888888999999999
Q ss_pred EECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 571 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 571 ~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
++|+||++++|..|............++|+.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+
T Consensus 488 ~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~ 567 (693)
T 3iuj_A 488 VANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGV 567 (693)
T ss_dssp EECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCC
T ss_pred EEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCc
Confidence 99999999999999877666666677899999999999998899999999999999999999999999999999999999
Q ss_pred cchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhh-HHHHhhcCccccccC-CCCc-EEEEeeCCCCccCcHHHHHHH
Q 004149 651 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHSKSPISHISK-VKTP-TIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sp~~~~~~-i~~P-~Lii~G~~D~~vp~~~~~~~~ 727 (771)
.++..+........| ...++. ....+. ...+...+|+.++.+ +++| +||+||++|.+||+.++.+++
T Consensus 568 ~d~~~~~~~~~~~~~--~~~~g~--------p~~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~ 637 (693)
T 3iuj_A 568 LDMLRYHTFTAGTGW--AYDYGT--------SADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFA 637 (693)
T ss_dssp CCTTTGGGSGGGGGC--HHHHCC--------TTSCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHH
T ss_pred chhhhhccCCCchhH--HHHcCC--------ccCHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHH
Confidence 987654322111111 112221 112233 556778899999999 8987 999999999999999999999
Q ss_pred HHHHhC---CCCEEEEEeCCCCccCCCC-CChHHHHHHHHHHHHHHhC
Q 004149 728 RALREK---GVETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 728 ~~l~~~---g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~wl~~~l~ 771 (771)
++|+.. ++++++++++++||++..+ ....+.+..+.+||.++|+
T Consensus 638 ~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 685 (693)
T 3iuj_A 638 ATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMG 685 (693)
T ss_dssp HHHHHHCCSSSCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 999998 4799999999999998764 4556778899999999875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=463.23 Aligned_cols=591 Identities=17% Similarity=0.229 Sum_probs=403.1
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
...||| ++++|+.+ ..++++++. +++.++++... ..+..++|||||++|||+++. .+
T Consensus 87 ~~~spd-~~~~~~~~----------~~i~~~d~~--~~~~~~l~~~~-----~~~~~~~~SpdG~~la~~~~~-----~i 143 (706)
T 2z3z_A 87 TLDAGR-GLVVLFTQ----------GGLVGFDML--ARKVTYLFDTN-----EETASLDFSPVGDRVAYVRNH-----NL 143 (706)
T ss_dssp EEETTT-TEEEEEET----------TEEEEEETT--TTEEEEEECCT-----TCCTTCEECTTSSEEEEEETT-----EE
T ss_pred EEECCC-CeEEEEEC----------CEEEEEECC--CCceEEccCCc-----ccccCCcCCCCCCEEEEEECC-----eE
Confidence 345789 78888753 477887763 33555555433 446779999999999997542 46
Q ss_pred EEEe-cC-----CcceEEEecCCc-c-ccc-ccCC--CcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004149 127 FELW-SQ-----SQLEKEFHVPQT-V-HGS-VYAD--GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 127 ~~~~-~~-----~~~~~~~~~~~~-~-~g~-~~~~--~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
+.++ .+ ++.++++..... + .|. ++.+ ....+++|||||++|+|.+.+..... .+............
T Consensus 144 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~-~~~~~~~~~~~~~~-- 220 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK-PTPIVDYHPLEAES-- 220 (706)
T ss_dssp EEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC-CEEEEECCSSSCEE--
T ss_pred EEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc-eEEeeccCCCCCce--
Confidence 6666 45 555555443221 0 000 0000 01258999999999999874432211 11100000000000
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004149 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
....|... |. ......|++||+++++.+.+... .....+..++|||||+. |++.+....
T Consensus 221 ----~~~~y~~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~~~~-------- 280 (706)
T 2z3z_A 221 ----KPLYYPMA-GT---PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI----LYVAEVNRA-------- 280 (706)
T ss_dssp ----EEECCCBT-TS---CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE----EEEEEECTT--------
T ss_pred ----EEeeCCCC-CC---CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE----EEEEEeCCC--------
Confidence 00111111 11 12347899999999998777311 23345678999999998 988763221
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCC--Cc---cccceeecC--CCCEEEEEecCCCCCCCCcc
Q 004149 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTES--IS---SAFFPRFSP--DGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~--~~---~~~~p~~Sp--DG~~l~f~~~~~~~~~g~~~ 346 (771)
.....|+++|+ .++ ..+.+... .. ....+.||| ||+.| +.+..+ |
T Consensus 281 --~~~~~v~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~----g--- 333 (706)
T 2z3z_A 281 --QNECKVNAYDA-----------------ETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRD----G--- 333 (706)
T ss_dssp --SCEEEEEEEET-----------------TTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTT----S---
T ss_pred --CCeeEEEEEEC-----------------CCCceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccC----C---
Confidence 12237999998 666 44444321 11 135789999 99854 555443 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC-CccccCCCEEEEEeeeCC--eeEEEEEECCCC
Q 004149 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGS--SQVIISVNVSSG 423 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~-~~~s~dg~~l~~~~~~~~--~~~l~~~d~~tg 423 (771)
..+||.++..++..+.++.... .+.. +.|+|||+.|++++..++ ...||.+++.++
T Consensus 334 -~~~l~~~~~~~~~~~~l~~~~~--------------------~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 334 -WNHLYLYDTTGRLIRQVTKGEW--------------------EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp -SCEEEEEETTSCEEEECCCSSS--------------------CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred -ccEEEEEECCCCEEEecCCCCe--------------------EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 4678888865544433332211 1122 579999999998887654 568999999999
Q ss_pred cEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeee
Q 004149 424 ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK 503 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 503 (771)
+.++++.... +....||+||+.+++.+++.+.|.++++.++.+++ ... ++ ..+ .+.. ......+.
T Consensus 393 ~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~----~~~--~~----~~~-~~~~-~~~~~~~~-- 457 (706)
T 2z3z_A 393 KTKDLTPESG-MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS----HTL--LE----AKN-PDTG-YAMPEIRT-- 457 (706)
T ss_dssp CCEESCCSSS-EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE----EEE--EE----CC--------CCCCEEE--
T ss_pred CceeccCCCc-eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe----Eee--cc----ccc-hhhh-cCCCCcEE--
Confidence 9888875433 55678999999999999999999999999876542 111 11 001 1100 01111111
Q ss_pred ecccCcccccccCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchH----HHHHHHHCCcEEEEECCCCC
Q 004149 504 IPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSK----SLAFLSSVGYSLLIVNYRGS 577 (771)
Q Consensus 504 i~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~----~~~~la~~G~~V~~~d~rG~ 577 (771)
..+...+| .++.++++.|+++++.+++|+||++||+++.... ..|.. .++.|+++||.|+++|+||.
T Consensus 458 -------~~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~ 530 (706)
T 2z3z_A 458 -------GTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGS 530 (706)
T ss_dssp -------EEEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCTTC
T ss_pred -------EEEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecCCC
Confidence 23445567 8999999999876666788999999998876532 34544 57889999999999999999
Q ss_pred CCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh
Q 004149 578 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 578 ~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 657 (771)
++++..+.......++...++|+.++++++.+++.+|.+|++|+||||||++++.++.++|++++++|+.+|+.++..+.
T Consensus 531 g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~ 610 (706)
T 2z3z_A 531 ANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYA 610 (706)
T ss_dssp SSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSB
T ss_pred cccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHH
Confidence 98888877666667777778999999999988877888999999999999999999999999999999999988754221
Q ss_pred cCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCE
Q 004149 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 737 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 737 (771)
..+.+.+ ...+ ....+.+...+|...+.++++|+|++||++|.++|++++++++++|++.++++
T Consensus 611 -------~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 674 (706)
T 2z3z_A 611 -------IMYGERY--------FDAP-QENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYP 674 (706)
T ss_dssp -------HHHHHHH--------HCCT-TTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCC
T ss_pred -------hhhhhhh--------cCCc-ccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHCCCCe
Confidence 0111111 1111 23345667778888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 738 KVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++|+++|.+... ...++++.+.+||+++|
T Consensus 675 ~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 675 DYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp EEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 999999999998755 56788999999999886
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=444.45 Aligned_cols=597 Identities=14% Similarity=0.096 Sum_probs=404.3
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeec-CCC--C-ccceeecCCccccc--cc
Q 004149 28 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISK-ENE--N-SVTFQWAPFPVEMT--GA 101 (771)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~lt~~~~~~~~~--~~ 101 (771)
.+||+++...-..... ....++|.+++|+..... +....++..+... .++ . .+.+....+....+ ..
T Consensus 104 ~~l~~e~~~~~~~~~~---~~p~~~g~~~yy~~~~~g----~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~ 176 (751)
T 2xe4_A 104 DDIYAEHISHINEDDM---SAPYVYGKYRYYTREVKG----KPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDV 176 (751)
T ss_dssp HHHHHHHHHTSCSSEE---CCCEEETTEEEEEEECTT----CCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEE
T ss_pred HHHHHHHHHhcccccC---CCCeEECCEEEEEEECCC----CceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEE
Confidence 4567777655444331 111248889999865322 2233455543210 222 2 22222211111001 35
Q ss_pred eEEEeC-CCCCeEEEEecCCC-CCCeEEEEe-cCC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 102 SAVVPS-PSGSKLLVVRNPEN-ESPIQFELW-SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 102 ~~~~~S-PdG~~la~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..++|| |||++|||+.+..+ +..++++++ .++ +. +.. ... +.+.+++|||||+.|+|++.+...
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~---~~~------~~~~~~~WspDg~~l~y~~~d~~~- 244 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD---KVS------GTNGEIVWGPDHTSLFYVTKDETL- 244 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC---CEE------EECSCCEECSSTTEEEEEEECTTC-
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc---ccc------CceeeEEEecCCCEEEEEEECCCC-
Confidence 679999 99999999988653 234588888 555 31 110 000 012589999999999998654210
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
...+||++++.++.. +.+...+......++.|||||+.
T Consensus 245 --------------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~-- 284 (751)
T 2xe4_A 245 --------------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT-- 284 (751)
T ss_dssp --------------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE--
T ss_pred --------------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE--
Confidence 125899999988753 23310122223457899999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cc--eecCCCCccccceeecCC---C
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PV--VNLTESISSAFFPRFSPD---G 328 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~--~~lt~~~~~~~~p~~SpD---G 328 (771)
|+|.++.. ..++||++|+ +++ +. +.|+... ..+.|||| |
T Consensus 285 --l~~~~~~~------------~~~~l~~~d~-----------------~~~~~~~~~~~l~~~~---~~~~~s~~~~~g 330 (751)
T 2xe4_A 285 --LCIGSQSP------------ETAEVHLLDL-----------------RKGNAHNTLEIVRPRE---KGVRYDVQMHGT 330 (751)
T ss_dssp --EEEEEECS------------SCEEEEEEES-----------------SSCTTCCCEEESSCCC---TTCCEEEEEETT
T ss_pred --EEEEecCC------------CCceEEEEEC-----------------CCCCCCceeEEeecCC---CCceEEEeeeeC
Confidence 99988532 2348999998 443 44 6666543 35567777 9
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCC-CCCC-CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEE
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~ 406 (771)
++|+|.++.+ + ....+|+++|+.+. +.+. +.....++ .+. .|+.+++.|++.
T Consensus 331 ~~l~~~t~~~----~--a~~~~L~~~d~~~~~~~~~~li~~~~~~------------------~l~--~~~~~~~~lv~~ 384 (751)
T 2xe4_A 331 SHLVILTNEG----G--AVNHKLLIAPRGQPSDWSHVLVDHSEDV------------------FME--SIAVRSNYLVVA 384 (751)
T ss_dssp TEEEEEECTT----T--CTTCEEEEEETTSTTCCCCEEECCCSSE------------------EEE--EEEECSSEEEEE
T ss_pred CEEEEEeCCC----C--CCCcEEEEEcCCCcccceeeEECCCCCc------------------EEE--EEEEECCEEEEE
Confidence 9999999874 1 23568999998752 3232 22111000 011 245567789999
Q ss_pred eeeCCeeEEEEEEC-------CCCc-EEEecCCCCCceeeEE------eecCCEEEEEEeCCCCCCeEEEEEecccCCCc
Q 004149 407 SIWGSSQVIISVNV-------SSGE-LLRITPAESNFSWSLL------TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG 472 (771)
Q Consensus 407 ~~~~~~~~l~~~d~-------~tg~-~~~l~~~~~~~~~~~~------s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~ 472 (771)
...++...|+.+++ ++++ .++|+..... ....+ +.+++.+++..+++++|+++|++++.+++ .
T Consensus 385 ~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~--~ 461 (751)
T 2xe4_A 385 GRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPI-FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS--R 461 (751)
T ss_dssp EEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSS-CEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC--E
T ss_pred EEeCCEEEEEEEecccccccccCCccceEECCCCce-eEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc--E
Confidence 99999999999996 6777 7888644332 22234 45888999999999999999999876543 1
Q ss_pred eeeeeccCCCCC-CCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC
Q 004149 473 TWSWLNVSSPIS-RCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 551 (771)
Q Consensus 473 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~ 551 (771)
..++.. +.. .++ ...+....+ .+...+|.+++++++.|++....++.|+||++|||++...
T Consensus 462 -~~l~~~--~~~~~~~--------~~~~~~~~~-------~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~~~ 523 (751)
T 2xe4_A 462 -TAVKVR--EVGGGFD--------AANYKVERR-------FATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSM 523 (751)
T ss_dssp -EEEEEC--CCCTTCC--------GGGEEEEEE-------EEECTTCCEEEEEEEEETTSCTTSCCCEEEECCCCTTCCC
T ss_pred -EEEecc--ccccCCC--------ccceEEEEE-------EEECCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCcCC
Confidence 111111 110 111 112222222 4455678999999999987655678999999999987765
Q ss_pred CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh-cCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHH
Q 004149 552 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLT 630 (771)
Q Consensus 552 ~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~-~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a 630 (771)
...|...+..|+++||+|+++|+||++++|..|.. .....++...++|+.+++++|++++.+|++||+|+|+|+||+++
T Consensus 524 ~~~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la 603 (751)
T 2xe4_A 524 DPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLM 603 (751)
T ss_dssp CCCCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHH
T ss_pred CCcchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHH
Confidence 55676677789999999999999999999999887 66555666789999999999999988999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCc-EEE
Q 004149 631 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIF 709 (771)
Q Consensus 631 ~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Li 709 (771)
+.++.++|++|+++|+.+|+.++..+......+... ..+ ..+......+....+...+|+.++.++++| +||
T Consensus 604 ~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~--~~~-----~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Li 676 (751)
T 2xe4_A 604 GAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTT--GEW-----EEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMV 676 (751)
T ss_dssp HHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHH--HHT-----TTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEE
T ss_pred HHHHHhCchheeEEEEeCCcchHHhhhcccCcccch--hhH-----HHcCCCCCHHHHHHHHhcChhhhhccCCCCceeE
Confidence 999999999999999999999987654332222111 111 011111123344567788999999999997 999
Q ss_pred EeeCCCCccCcHHHHHHHHHHHhCCC---CEEEEEeCCCCccCCCCC-ChHHHHHHHHHHHHHHhC
Q 004149 710 LLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 710 i~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~wl~~~l~ 771 (771)
+||++|.+||+.++.+++++|+..++ .+.+.++++++|++.... ...+.+..+.+||.++|+
T Consensus 677 i~G~~D~~vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~ 742 (751)
T 2xe4_A 677 QCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLK 742 (751)
T ss_dssp EEETTCSSSCTHHHHHHHHHHHHHCCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred EeeCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999854 456777799999987543 334566789999999874
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=357.78 Aligned_cols=468 Identities=14% Similarity=0.137 Sum_probs=325.8
Q ss_pred ceEEEEEccCCc--eeec-cCCCCCCccceEEEecCCCCCccEE---EEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 218 PSLFVININSGE--VQAV-KGIPKSLSVGQVVWAPLNEGLHQYL---VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 218 ~~l~v~d~~~~~--~~~l-~~~~~~~~~~~~~wspDg~~~~~~l---~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
..+|.+.+.+.. -+.+ .+...+. .-.+.-++|++. . ++++...+ ...+++|+++++.
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~-~~~~~~~~~~~~----~~~~~~i~~~~~----------~~~~~~~~~~~~~-- 278 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYI-YVSAGKLLSDTI----SSSLIFISANKD----------FYNYDNYILDTKY-- 278 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSC-EEEEEESSCTTT----CSSEEEEEEESS----------SSCEEEEEEECSS--
T ss_pred CEEEEEECCCChHHCeEEeccCCCce-EEEEEEecCCCc----eEEEEEEEEecc----------cCceeEEEEcCCC--
Confidence 578888876652 2222 2222222 223455778775 3 34431111 1235899998621
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-----CC---
Q 004149 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-----FS--- 363 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-----~~--- 363 (771)
..++.++|.... ...+.++++|+.+++...+... .|......+|+.+|+++... ..
T Consensus 279 -------------~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (711)
T 4hvt_A 279 -------------KNLKLQKINMPS--DATLQGSFKEYVFWLLRSDWKF-KSHNIKAGSLVALHFTDLLKTESDKTSLKI 342 (711)
T ss_dssp -------------SSCEEEECCSCT--TCEEEEEETTEEEEECSSCEEE-TTEEECTTCEEEEEGGGGGSCGGGCTTCEE
T ss_pred -------------CCCcceEeecCC--cceEeeeECCEEEEEECccccc-ccccCCCCeEEEEECCcccccccccccceE
Confidence 224555663332 2335667777654444332110 01112346799999876321 10
Q ss_pred -CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc--EEE-ecCC-CCCceee
Q 004149 364 -SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLR-ITPA-ESNFSWS 438 (771)
Q Consensus 364 -~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~--~~~-l~~~-~~~~~~~ 438 (771)
++...+ ..+..+.|+.| .|++....++...|+.+++.+|+ .+. +..+ .+.+...
T Consensus 343 ~~~~~~~-------------------~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~ 401 (711)
T 4hvt_A 343 LFTPTAN-------------------EVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGM 401 (711)
T ss_dssp EECCCTT-------------------EEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEE
T ss_pred EECCCCC-------------------CeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEE
Confidence 111111 12345567765 58888888899999999987774 445 4433 2333334
Q ss_pred EEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCC
Q 004149 439 LLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ 518 (771)
Q Consensus 439 ~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g 518 (771)
..+++++.+++..+++++|+++|++++. ++ . +.+..+ +. .+....+....+ .+...+|
T Consensus 402 ~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~--~----~~l~~~----~~----~~~~~~~~~e~v-------~~~s~DG 459 (711)
T 4hvt_A 402 SSYEEEEEALITIENSIVPPTIYLWVKT-HE--L----KIIRKA----LY----SFDSENYVLEQK-------EATSFDG 459 (711)
T ss_dssp ECCTTCSCEEEEEECSSSCCEEEEECTT-SC--E----EEEECC----SS----CCCGGGEEEEEE-------EEECTTS
T ss_pred eecCcCCEEEEEEecCCCCCEEEEEeCC-Cc--E----EEEecC----Cc----ccCcccCeeEEE-------EEECCCC
Confidence 4557888999999999999999999875 32 1 111111 11 111222222222 4556789
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+++++++.|++....++.|+||++|||++......|.... +.|+++||+|+++|+||++++|..|.......++...+
T Consensus 460 ~~i~~~l~~P~~~~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~ 539 (711)
T 4hvt_A 460 VKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAF 539 (711)
T ss_dssp CEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHH
T ss_pred eEEEEEEEecCCCCCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcH
Confidence 99999999999776678899999999998877666776655 48899999999999999999999998887777777889
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
+|+.+++++|++++.+|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++..+........| ...++.
T Consensus 540 ~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~--~~~~G~---- 613 (711)
T 4hvt_A 540 NDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSW--VTEYGD---- 613 (711)
T ss_dssp HHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGG--HHHHCC----
T ss_pred HHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHH--HHHhCC----
Confidence 99999999999998899999999999999999999999999999999999999997665433222222 122222
Q ss_pred cCCCCCChhhHHHHhhcCccccccCCCC--cEEEEeeCCCCccCcHHHHHHHHHH-HhCCCCEEEEEeCCCCccCCCCC-
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISKVKT--PTIFLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERPQ- 753 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~--P~Lii~G~~D~~vp~~~~~~~~~~l-~~~g~~~~~~~~~~~~H~~~~~~- 753 (771)
....+..+.+...||+.++.++++ |+||+||++|.+||+.++.+++++| ++.|++++++++++++|++....
T Consensus 614 ----p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~ 689 (711)
T 4hvt_A 614 ----PEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLK 689 (711)
T ss_dssp ----TTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHH
T ss_pred ----CcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcc
Confidence 122355677888999999999886 9999999999999999999999999 99999999999999999986533
Q ss_pred ChHHHHHHHHHHHHHHhC
Q 004149 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~wl~~~l~ 771 (771)
.....+..+.+||.++|+
T Consensus 690 ~~~~~~~~i~~FL~~~Lg 707 (711)
T 4hvt_A 690 ESANYFINLYTFFANALK 707 (711)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhC
Confidence 345566788999999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=234.30 Aligned_cols=318 Identities=14% Similarity=0.118 Sum_probs=201.9
Q ss_pred cCCCCccceeecCCccccccceE-----EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCc
Q 004149 81 KENENSVTFQWAPFPVEMTGASA-----VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGW 154 (771)
Q Consensus 81 ~~~~~~~~lt~~~~~~~~~~~~~-----~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 154 (771)
..+...++||..+ ..... |+|||||++|||.+..+ +..++|.++ .+++.++++......
T Consensus 18 ~~g~~~~~lt~~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~lt~~~~~~--------- 82 (388)
T 3pe7_A 18 STGAQVTRLTPPD-----VTCHRNYFYQKCFTRDGSKLLFGGAFD-GPWNYYLLDLNTQVATQLTEGRGDN--------- 82 (388)
T ss_dssp TTCCEEEECSCTT-----SCEECCCTTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTCEEEECCCSSCBC---------
T ss_pred CCCcceEEecCCc-----ccccchhhcCccCCCCCCEEEEEEcCC-CCceEEEEeCCCCceEEeeeCCCCC---------
Confidence 3444566776554 22333 89999999999998754 567899888 666666666543222
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc--ccccCCcCcc---------------------
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ--GDWEEDWGET--------------------- 211 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~g~~--------------------- 211 (771)
...+.|||||++|+|.+...... .++...............+... ..+++|....
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~--~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLM--RVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEE--EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ccceEEcCCCCEEEEEeCCCeEE--EEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhh
Confidence 12678999999999998542110 1111111100000001111100 1112332111
Q ss_pred -cCCccCceEEEEEccCCceeeccCCCCCCccceEEEec-CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 212 -YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 212 -~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp-Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
+.......|+++|+.+++.+.+ +.....+..+.||| ||+. |+|++.... .....+||.+|+
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~~~~~l~~~d~-- 223 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDLKTGESTVI--LQENQWLGHPIYRPYDDST----VAFCHEGPH---------DLVDARMWLINE-- 223 (388)
T ss_dssp HGGGCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCT---------TTSSCSEEEEET--
T ss_pred hhccCCcceEEEEECCCCceEEe--ecCCccccccEECCCCCCE----EEEEEecCC---------CCCcceEEEEeC--
Confidence 1122347899999999999888 45555678899999 9999 999874211 012458999998
Q ss_pred ccchhhhhhhhcCCCCCCcceecCCCCc--cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004149 290 YKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
+++..++|+.... .+..|.|||||++|+|.+.+. | .....|+++|+.+++.+.++..
T Consensus 224 ---------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~----~--~~~~~l~~~d~~~g~~~~l~~~ 282 (388)
T 3pe7_A 224 ---------------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK----G--SPDRFIYSADPETLENRQLTSM 282 (388)
T ss_dssp ---------------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET----T--CCCEEEEEECTTTCCEEEEEEE
T ss_pred ---------------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCC----C--CCcceEEEEecCCCceEEEEcC
Confidence 7778888887653 477899999999999998764 2 1123599999998876444321
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee------CCeeEEEEEECCCCcEEEecCCCC--------
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW------GSSQVIISVNVSSGELLRITPAES-------- 433 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~------~~~~~l~~~d~~tg~~~~l~~~~~-------- 433 (771)
... . .+........|||||+.|++.... .+...||++|+++++.++|+....
T Consensus 283 ~~~-~-------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 283 PAC-S-------------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGD 348 (388)
T ss_dssp CCE-E-------------EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTB
T ss_pred CCc-e-------------eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccc
Confidence 110 0 000113345799999999887643 556789999999999999986654
Q ss_pred ---CceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 434 ---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 434 ---~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
....+.|++||+.|++.+.. ...++||++++.+.
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTSDV-HGKPALYLATLPES 385 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEECCGG
T ss_pred cccCCCCccCCCCCCEEEEEecC-CCceeEEEEECChh
Confidence 34557899999999988765 45567999887643
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=214.66 Aligned_cols=209 Identities=17% Similarity=0.182 Sum_probs=143.8
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...||.+|.++++.|. ...+.|+||++||++.......+...++.|+++||+|+++|+||+++++............
T Consensus 36 ~~~dG~~i~g~l~~P~---~~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~ 112 (259)
T 4ao6_A 36 LEVDGRTVPGVYWSPA---EGSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVV 112 (259)
T ss_dssp EEETTEEEEEEEEEES---SSCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC-------------CCGG
T ss_pred EeeCCeEEEEEEEeCC---CCCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccccccchhh
Confidence 3568999999999998 4567799999999887654556777889999999999999999976554332211111110
Q ss_pred ---------------ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc
Q 004149 594 ---------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658 (771)
Q Consensus 594 ---------------~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~ 658 (771)
...+.|..++++++... +|++||+++|+|+||++++.++...|+ ++++|+..+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~~~~~----- 184 (259)
T 4ao6_A 113 GLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLMGVEG----- 184 (259)
T ss_dssp GSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESCCTTS-----
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEecccccc-----
Confidence 11234667777777655 578999999999999999999998775 6666654332110
Q ss_pred CCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 659 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.. ..++...+.+|++|+|++||++|.+||++++.++++++.. .+.+
T Consensus 185 ------------------------~~--------~~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~~--~~k~ 230 (259)
T 4ao6_A 185 ------------------------VN--------GEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGT--KQKT 230 (259)
T ss_dssp ------------------------TT--------HHHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCC--SSEE
T ss_pred ------------------------cc--------ccchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhCC--CCeE
Confidence 00 1123455678999999999999999999999999998843 4577
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 739 VIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++++++..|.+ ...+.+..+++||++|||
T Consensus 231 l~~~~G~H~~~----p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 231 LHVNPGKHSAV----PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp EEEESSCTTCC----CHHHHTHHHHHHHHHHCC
T ss_pred EEEeCCCCCCc----CHHHHHHHHHHHHHHhcC
Confidence 88898744433 345778999999999997
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=221.03 Aligned_cols=266 Identities=17% Similarity=0.198 Sum_probs=198.2
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-
Q 004149 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW- 130 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~- 130 (771)
.+.+++|...... +...+.|++++++ +...+.++... ..+..++|||||++|||.+... +...++..+
T Consensus 142 ~~~~l~~~s~~~~---~~~~~~i~i~d~~--g~~~~~l~~~~-----~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~ 210 (415)
T 2hqs_A 142 FRTRIAYVVQTNG---GQFPYELRVSDYD--GYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTL 210 (415)
T ss_dssp TTCEEEEEEECSS---SSCCEEEEEEETT--SCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEET
T ss_pred CCCEEEEEEecCC---CCccceEEEEcCC--CCCCEEEeCCC-----CcceeeEEcCCCCEEEEEEecC-CCcEEEEEEC
Confidence 3667787765421 1223788888874 34556665543 5688999999999999998654 445666666
Q ss_pred cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004149 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
.+++.+++....... ..++|||||++|+|.+...
T Consensus 211 ~tg~~~~l~~~~~~~----------~~~~~spdg~~la~~~~~~------------------------------------ 244 (415)
T 2hqs_A 211 ANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT------------------------------------ 244 (415)
T ss_dssp TTCCEEEEECCSSCE----------EEEEECTTSSEEEEEECTT------------------------------------
T ss_pred CCCcEEEeecCCCcc----------cCEEEcCCCCEEEEEEecC------------------------------------
Confidence 555555554433222 5899999999999975432
Q ss_pred ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004149 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
+...||+||+.+++.+.+ +.....+..+.|||||+. |+|.+... ...+||.+|+
T Consensus 245 -----g~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~spdg~~----l~~~s~~~------------g~~~i~~~d~--- 298 (415)
T 2hqs_A 245 -----GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQA------------GRPQVYKVNI--- 298 (415)
T ss_dssp -----SSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE----EEEEECTT------------SSCEEEEEET---
T ss_pred -----CCceEEEEECCCCCEEeC--cCCCCcccceEECCCCCE----EEEEECCC------------CCcEEEEEEC---
Confidence 346899999999999888 555556788999999999 99987422 2238999998
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004149 291 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
.+++.++++.....+..++|||||++|++.+.+. | ...|+++|+.+++.+.++...
T Consensus 299 --------------~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~----g----~~~i~~~d~~~~~~~~l~~~~-- 354 (415)
T 2hqs_A 299 --------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG----G----QQHIAKQDLATGGVQVLSSTF-- 354 (415)
T ss_dssp --------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS----S----CEEEEEEETTTCCEEECCCSS--
T ss_pred --------------CCCCEEEEecCCCcccCeEECCCCCEEEEEECcC----C----ceEEEEEECCCCCEEEecCCC--
Confidence 7777888887777788999999999999998764 1 467999999887654332211
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeec
Q 004149 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 443 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d 443 (771)
....++|+|||+.|++.+...+...||.+|++++..++|+...+.+..+.|+|.
T Consensus 355 -------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 355 -------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp -------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred -------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccc
Confidence 134678999999999988888888999999998889999887776777888874
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-24 Score=216.70 Aligned_cols=230 Identities=17% Similarity=0.189 Sum_probs=170.3
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
...+|..+.+++..|......++.|+||++||+++... ...+...+..|+++||.|+++|+||.+.... ...
T Consensus 20 ~~~~g~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~-------~~~ 92 (276)
T 3hxk_A 20 SLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN-------YNF 92 (276)
T ss_dssp CCBTTBEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC-------SCT
T ss_pred cCCCCeEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC-------CCc
Confidence 34567788876665543223377899999999774432 3456678889999999999999999654211 011
Q ss_pred cccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHh-CCCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 593 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
.....+|+.++++++.++. .+++++|+|+|||+||.+++.++.+ .+.+++++|+.+|+.++........ .
T Consensus 93 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~~--~---- 166 (276)
T 3hxk_A 93 LSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSDL--S---- 166 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSSS--S----
T ss_pred CchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcch--h----
Confidence 2245789999999998864 3688999999999999999999988 7889999999999876543211110 0
Q ss_pred hhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
...+. . .. . ...++...+.++++|+|++||++|..+|++++..+++.+++.+.+++++++++++|+
T Consensus 167 -------~~~~~--~--~~--~-~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 232 (276)
T 3hxk_A 167 -------HFNFE--I--EN--I-SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHG 232 (276)
T ss_dssp -------SSCCC--C--SC--C-GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCTT
T ss_pred -------hhhcC--c--hh--h-hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence 01111 0 11 1 445677778888999999999999999999999999999999999999999999998
Q ss_pred CCCCCC------------hHHHHHHHHHHHHHHh
Q 004149 749 IERPQS------------DFESFLNIGLWFKKYC 770 (771)
Q Consensus 749 ~~~~~~------------~~~~~~~i~~wl~~~l 770 (771)
+..... ..+++..+.+||+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 266 (276)
T 3hxk_A 233 VSLANRTTAPSDAYCLPSVHRWVSWASDWLERQI 266 (276)
T ss_dssp CTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHH
T ss_pred ccccCccccccccccCchHHHHHHHHHHHHHhCc
Confidence 875332 3568888999999875
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=210.17 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=162.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh-------cCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-------SLP 589 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~-------~~~ 589 (771)
+|.++.++++.|++ ..++.|+||++||.... ...+...+..|+++||.|+++|++|.++....+.. ...
T Consensus 14 ~~~~~~~~~~~p~~--~~~~~p~vv~~HG~~g~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~~~~~~~~~~~~~~ 89 (241)
T 3f67_A 14 QGENMPAYHARPKN--ADGPLPIVIVVQEIFGV--HEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVS 89 (241)
T ss_dssp TTEEEEEEEEEETT--CCSCEEEEEEECCTTCS--CHHHHHHHHHHHHTTCEEEEECTTTTTCCGGGCCSHHHHHHHTGG
T ss_pred CCcceEEEEecCCC--CCCCCCEEEEEcCcCcc--CHHHHHHHHHHHHCCcEEEEecccccCCCCCchhhHHHHHHHhhh
Confidence 67889999999984 33568999999996544 34677788899999999999999986554332110 000
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
........+|+.++++++.+++ +|.++|+|+|||+||.+++.++.++|+ ++++++..+..... .
T Consensus 90 ~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~-------~------- 153 (241)
T 3f67_A 90 KVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGE-------K------- 153 (241)
T ss_dssp GSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCC-------C-------
T ss_pred cCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCC-------C-------
Confidence 0111234789999999998886 788999999999999999999999887 66666655432100 0
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
..+...+|...+.++++|+|+++|++|..+|++++..+++.+++.+.+++++++++++|++
T Consensus 154 -------------------~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 214 (241)
T 3f67_A 154 -------------------SLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHAF 214 (241)
T ss_dssp -------------------CSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCTTT
T ss_pred -------------------ccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCcce
Confidence 0112234556677889999999999999999999999999999999999999999999988
Q ss_pred CCC-------CChHHHHHHHHHHHHHH
Q 004149 750 ERP-------QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 750 ~~~-------~~~~~~~~~i~~wl~~~ 769 (771)
... ....+.++.+++||++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 215 NADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp TCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 632 22356788999999764
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=210.08 Aligned_cols=242 Identities=13% Similarity=0.147 Sum_probs=162.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.+++++++.|++ ..++.|+||++||.+.......|...+..|+++||.|+++|+||.+.+..... . .....
T Consensus 8 ~~g~~l~~~~~~p~~--~~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~---~-~~~~~ 81 (251)
T 2wtm_A 8 CDGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFE---D-HTLFK 81 (251)
T ss_dssp ETTEEEEEEEECCTT--CCSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGG---G-CCHHH
T ss_pred cCCcEEEEEEEccCC--CCCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCccc---c-CCHHH
Confidence 367889999998873 13467899999997665324467778889999999999999999544322110 0 01122
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
..+|+.++++++.+...+ ++++|+||||||.+++.++.++|++++++|+.+|.................+........
T Consensus 82 ~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 2wtm_A 82 WLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDE 159 (251)
T ss_dssp HHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBTTBCCSE
T ss_pred HHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCchhcchH
Confidence 367888888888655323 589999999999999999999999999999999975432211000000000000000000
Q ss_pred CCcCCCCC-ChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC
Q 004149 676 KDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 676 ~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
...+.... ...........++...+.++++|+|+++|++|..+|++.++.+++.+. +++++++++++|.+ .+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~~~gH~~--~~~ 233 (251)
T 2wtm_A 160 LDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIPGDTHCY--DHH 233 (251)
T ss_dssp EEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEETTCCTTC--TTT
T ss_pred HhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhCC----CcEEEEECCCCccc--chh
Confidence 00000000 001112222334445567889999999999999999999888877763 48999999999998 566
Q ss_pred hHHHHHHHHHHHHHHhC
Q 004149 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~wl~~~l~ 771 (771)
..++.+.+.+||+++++
T Consensus 234 ~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 234 LELVTEAVKEFMLEQIA 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 67899999999998874
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=207.87 Aligned_cols=224 Identities=17% Similarity=0.209 Sum_probs=162.4
Q ss_pred CCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 516 GAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~---~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+|.++.+.+|.|+.. ...++.|+||++|||++.. ....|...+..|+++||.|+++||||.+..+ .
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~--------~- 81 (277)
T 3bxp_A 11 TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ--------S- 81 (277)
T ss_dssp STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC--------C-
T ss_pred cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC--------c-
Confidence 3566788889999731 2456789999999976433 2345677888999999999999999944211 1
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhC--------------CCceeEEEecCCccchh
Q 004149 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------------PDKFVAAAARNPLCNLA 654 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--------------p~~~~a~v~~~p~~~~~ 654 (771)
......+|+.++++++.+.. .+++++|+|+|||+||.+++.++.++ +.+++++|+.+|+.+..
T Consensus 82 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~ 161 (277)
T 3bxp_A 82 VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLT 161 (277)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEEEESCCCBTT
T ss_pred cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEEEeCCcccCC
Confidence 12245789999999988752 26778999999999999999999885 67899999999987643
Q ss_pred hhhcCCCCCcchhhh-hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 655 LMVGTTDIPDWCYVE-SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
.... ...... .+ .......+|...+.++.+|+|++||++|.++|+++++.+++.+++.
T Consensus 162 ~~~~-----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 220 (277)
T 3bxp_A 162 AGFP-----TTSAARNQI----------------TTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQH 220 (277)
T ss_dssp SSSS-----SSHHHHHHH----------------CSCGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHHT
T ss_pred CCCC-----Cccccchhc----------------cchhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHHC
Confidence 2100 000000 00 0022345666777788899999999999999999999999999999
Q ss_pred CCCEEEEEeCCCCccCCCCCC--------------hHHHHHHHHHHHHHH
Q 004149 734 GVETKVIVFPNDVHGIERPQS--------------DFESFLNIGLWFKKY 769 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~--------------~~~~~~~i~~wl~~~ 769 (771)
+.+++++++++++|.+..... ..++++.+.+||+++
T Consensus 221 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 270 (277)
T 3bxp_A 221 QVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQ 270 (277)
T ss_dssp TCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhc
Confidence 999999999999997654322 357789999999876
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=221.25 Aligned_cols=234 Identities=16% Similarity=0.177 Sum_probs=164.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
.+.++++.|+ +.++.|+||++||++.. .+...+..|+++||.|+++|+||.++. +........+|
T Consensus 144 ~l~~~l~~P~---~~~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~--------~~~~~~~~~~d 208 (422)
T 3k2i_A 144 RVRATLFLPP---GPGPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDL--------PNNMDNISLEY 208 (422)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTS--------CSSCSCEETHH
T ss_pred cEEEEEEcCC---CCCCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCC--------CCCcccCCHHH
Confidence 5899999997 45678999999997654 234568889999999999999995543 22233356899
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh---cCCCCCcchhh-h--hccC
Q 004149 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTTDIPDWCYV-E--SYGS 673 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---~~~~~~~~~~~-~--~~~~ 673 (771)
+.++++++.++..++.++|+|+||||||.+++.++.++|+ ++++|+.+|........ .....+..... . ....
T Consensus 209 ~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
T 3k2i_A 209 FEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAF 287 (422)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEECT
T ss_pred HHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccCc
Confidence 9999999999887888999999999999999999999998 89999988875321100 00000000000 0 0000
Q ss_pred CCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCCC-EEEEEeCCCCccCCC
Q 004149 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVE-TKVIVFPNDVHGIER 751 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~-~~~~~~l~~~g~~-~~~~~~~~~~H~~~~ 751 (771)
.....+.. ...........+....+.++++|+|+++|++|.++|.+.. +.+.+.|++.+.+ +++++|++++|.+..
T Consensus 288 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~gagH~~~~ 365 (422)
T 3k2i_A 288 SGLVDIVD--IRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEP 365 (422)
T ss_dssp TSCEECTT--CBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEETTCCSCCCS
T ss_pred chhHHHHH--HHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEECCCCCEECC
Confidence 00000000 0000001112233345678899999999999999998866 6899999999988 999999999999832
Q ss_pred C---------------------------CChHHHHHHHHHHHHHHhC
Q 004149 752 P---------------------------QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ~---------------------------~~~~~~~~~i~~wl~~~l~ 771 (771)
+ +...+.++.+++||+++|+
T Consensus 366 p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~ 412 (422)
T 3k2i_A 366 PYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLG 412 (422)
T ss_dssp TTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 3466789999999999984
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=217.66 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=168.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++.++++.|++ .++.|+||++||++... ..+......|+++||.|+++|+||. |.+.. ........
T Consensus 135 dg~~i~~~l~~p~~---~~~~P~vl~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~rG~---G~s~~---~~~~~~~~ 203 (386)
T 2jbw_A 135 DGIPMPVYVRIPEG---PGPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPGQ---GEMFE---YKRIAGDY 203 (386)
T ss_dssp TTEEEEEEEECCSS---SCCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTTS---GGGTT---TCCSCSCH
T ss_pred CCEEEEEEEEcCCC---CCCCCEEEEeCCCCccH--HHHHHHHHHHHhCCCEEEEECCCCC---CCCCC---CCCCCccH
Confidence 68899999999984 36789999999876542 2344457888999999999999994 44311 11111222
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
.+++.++++++.+++.++.++|+|+|+|+||++++.++.+ |++++++|+. |+.++...... .+.. ..... .
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~--~~~~-~~~~~----~ 274 (386)
T 2jbw_A 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDL--ETPL-TKESW----K 274 (386)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGG--SCHH-HHHHH----H
T ss_pred HHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHh--ccHH-HHHHH----H
Confidence 3568888999999877888999999999999999999998 8899999999 98775433220 0000 00000 0
Q ss_pred CcCCCCCChhhH-HHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHH-HhCCCCEEEEEeCCCCccCCCCCC
Q 004149 677 DSFTESPSVEDL-TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 677 ~~~~~~~~~~~~-~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l-~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
..+......+.. ..+...++...+.++++|+|+++|++|. +|+++++++++.+ +. +++++++++++|.+ ...
T Consensus 275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~~~gH~~--~~~ 348 (386)
T 2jbw_A 275 YVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEKDGDHCC--HNL 348 (386)
T ss_dssp HHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEETTCCGGG--GGG
T ss_pred HHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeCCCCcCC--ccc
Confidence 001111112333 4556778888889999999999999999 9999999999988 64 58999999999976 334
Q ss_pred hHHHHHHHHHHHHHHhC
Q 004149 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~wl~~~l~ 771 (771)
..++++.+.+||+++|+
T Consensus 349 ~~~~~~~i~~fl~~~l~ 365 (386)
T 2jbw_A 349 GIRPRLEMADWLYDVLV 365 (386)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 55789999999999874
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=216.20 Aligned_cols=216 Identities=16% Similarity=0.162 Sum_probs=168.5
Q ss_pred ccccC-CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch----------HHHHHHHHCCcEEEEECCCCCCCC
Q 004149 512 NLTKG-AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS----------KSLAFLSSVGYSLLIVNYRGSLGF 580 (771)
Q Consensus 512 ~~~~~-~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~----------~~~~~la~~G~~V~~~d~rG~~~~ 580 (771)
.+.+. +|..+.+++|.|+++.+.+++|+||++||+++........ ....+....|+.|+++|+||.+++
T Consensus 148 ~~~~~~dg~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~g~~~~ 227 (380)
T 3doh_A 148 TFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSW 227 (380)
T ss_dssp EEECTTTCCEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCCTTCCS
T ss_pred eeccCCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCCCCCcc
Confidence 44555 7889999999999766678899999999987543221111 012234577899999999998888
Q ss_pred ChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC
Q 004149 581 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 660 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 660 (771)
+..|.............+|+.++++++.++..+|++||+|+|||+||++++.++.++|++++++++.+|..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~------- 300 (380)
T 3doh_A 228 STLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDV------- 300 (380)
T ss_dssp BTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCG-------
T ss_pred cccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCCh-------
Confidence 7776543333444556889999999999987788899999999999999999999999999999999887410
Q ss_pred CCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004149 661 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
..+..+ .+|+|++||+.|..+|++++++++++|++.|.++++
T Consensus 301 -------------------------------------~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 343 (380)
T 3doh_A 301 -------------------------------------SKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRY 343 (380)
T ss_dssp -------------------------------------GGGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEE
T ss_pred -------------------------------------hhhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEE
Confidence 111223 389999999999999999999999999999999999
Q ss_pred EEeCCC---CccCCCCCChHHHHH--HHHHHHHHHhC
Q 004149 740 IVFPND---VHGIERPQSDFESFL--NIGLWFKKYCK 771 (771)
Q Consensus 740 ~~~~~~---~H~~~~~~~~~~~~~--~i~~wl~~~l~ 771 (771)
++++++ +|++.........+. .+.+||.++.+
T Consensus 344 ~~~~~~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~~r 380 (380)
T 3doh_A 344 TEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQSR 380 (380)
T ss_dssp EEECTTHHHHTTCCTTCTHHHHHTCHHHHHHHHTCC-
T ss_pred EEecCCcccCCCCCCchhHHHhcCCHHHHHHHHhhcC
Confidence 999999 555444444556666 89999987653
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=215.52 Aligned_cols=237 Identities=19% Similarity=0.227 Sum_probs=159.7
Q ss_pred cccCCCceEEEEEEe-cCCC--------------------CCCCCCcEEEEEcCCCCCCCCCc---chHHHHHHHHC-Cc
Q 004149 513 LTKGAQKPFEAIFVS-SSHK--------------------KDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSV-GY 567 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~-P~~~--------------------~~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la~~-G~ 567 (771)
+...+| +.+.+|. |+.. ...++.|+||++|||++...... |...+..|+++ ||
T Consensus 69 ~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~~~la~~~g~ 146 (365)
T 3ebl_A 69 IDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKG 146 (365)
T ss_dssp EETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTS
T ss_pred ecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHHHHHHHHCCC
Confidence 344556 6677887 8642 23467899999999887543332 45677788775 99
Q ss_pred EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC----CCCCC-eEEEEEcChhHHHHHHHHHhCCC---
Q 004149 568 SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD--- 639 (771)
Q Consensus 568 ~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-ri~l~G~S~GG~~a~~~a~~~p~--- 639 (771)
.|+++|||+++++ .....++|+.++++|+.++. .+|++ ||+|+|+|+||++|+.++.+.++
T Consensus 147 ~Vv~~dyR~~p~~-----------~~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~a~~~~~~~~ 215 (365)
T 3ebl_A 147 VVVSVNYRRAPEH-----------RYPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEGV 215 (365)
T ss_dssp EEEEECCCCTTTS-----------CTTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeeCCCCCCC-----------CCcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHHHHHHHhcCC
Confidence 9999999986543 12345799999999999764 47898 99999999999999999987655
Q ss_pred ceeEEEecCCccchhhhhcC------CCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc-cccCCC----CcEE
Q 004149 640 KFVAAAARNPLCNLALMVGT------TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-HISKVK----TPTI 708 (771)
Q Consensus 640 ~~~a~v~~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~~i~----~P~L 708 (771)
.++++|+.+|+++....... ...........+. ..+..... .......+|+. ....++ +|+|
T Consensus 216 ~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~p~~~~~~~l~~~~~pP~L 288 (365)
T 3ebl_A 216 KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYW----KAYLPEDA---DRDHPACNPFGPNGRRLGGLPFAKSL 288 (365)
T ss_dssp CCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHH----HHHSCTTC---CTTSTTTCTTSTTCCCCTTSCCCCEE
T ss_pred ceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHH----HHhCCCCC---CCCCcccCCCCCcchhhccCCCCCEE
Confidence 79999999998764311000 0000000000000 00000000 00011122332 223333 6899
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC---CCCChHHHHHHHHHHHHHHhC
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|+||+.|..+ .++.+++++|++.|++++++++++++|++. ..+...++++.+.+||+++++
T Consensus 289 i~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~ 352 (365)
T 3ebl_A 289 IIVSGLDLTC--DRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLY 352 (365)
T ss_dssp EEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC
T ss_pred EEEcCcccch--hHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999776 567899999999999999999999999876 234456789999999999875
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=220.80 Aligned_cols=234 Identities=14% Similarity=0.170 Sum_probs=161.8
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
.+.+++|.|+ +.++.|+||++||++.. .+...+..|+++||.|+++||||.++.+ ........+|
T Consensus 160 ~l~~~l~~P~---~~~~~P~Vv~lhG~~~~----~~~~~a~~La~~Gy~Vla~D~rG~~~~~--------~~~~~~~~~d 224 (446)
T 3hlk_A 160 RVRGTLFLPP---EPGPFPGIVDMFGTGGG----LLEYRASLLAGKGFAVMALAYYNYEDLP--------KTMETLHLEY 224 (446)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCSSCS----CCCHHHHHHHTTTCEEEEECCSSSTTSC--------SCCSEEEHHH
T ss_pred eEEEEEEeCC---CCCCCCEEEEECCCCcc----hhhHHHHHHHhCCCEEEEeccCCCCCCC--------cchhhCCHHH
Confidence 5899999997 45678999999997654 2334588999999999999999955432 2233345899
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh---cCCCCCcchh-hhh--ccC
Q 004149 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTTDIPDWCY-VES--YGS 673 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---~~~~~~~~~~-~~~--~~~ 673 (771)
+.++++++.++..++.++|+|+||||||.+++.++.++|+ ++++|+.+|........ .....+...+ ... ...
T Consensus 225 ~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
T 3hlk_A 225 FEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTK 303 (446)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEECS
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhcccccc
Confidence 9999999999887888999999999999999999999988 89999888865321100 0000000000 000 000
Q ss_pred CCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCCC-EEEEEeCCCCccCCC
Q 004149 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVE-TKVIVFPNDVHGIER 751 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~-~~~~~~l~~~g~~-~~~~~~~~~~H~~~~ 751 (771)
.....+... ...............+.++++|+|+++|++|.++|+.+. ..+++.|++.+.+ +++++||+++|.+..
T Consensus 304 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~pgagH~~~~ 381 (446)
T 3hlk_A 304 DGYADIVDV--LNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEP 381 (446)
T ss_dssp SSCEECTTC--BCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEETTBCSCCCS
T ss_pred chHHHHHHH--HhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEECCCCCeECC
Confidence 000000000 000000111122234677889999999999999998554 7899999999988 899999999999831
Q ss_pred ---------------------------CCChHHHHHHHHHHHHHHhC
Q 004149 752 ---------------------------PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ---------------------------~~~~~~~~~~i~~wl~~~l~ 771 (771)
.+...+.++.+++||+++|+
T Consensus 382 p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~ 428 (446)
T 3hlk_A 382 PYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLG 428 (446)
T ss_dssp TTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11256789999999999984
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=213.40 Aligned_cols=242 Identities=14% Similarity=0.169 Sum_probs=169.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-C-
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-P- 589 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~-~- 589 (771)
.+...+|.++.++++.|++. .++.|+||++||++... .+......|+++||.|+++|+||.++++....... +
T Consensus 72 ~~~~~dg~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~---~~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~p~ 146 (337)
T 1vlq_A 72 TFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGR---GFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE 146 (337)
T ss_dssp EEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCC---CCGGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCS
T ss_pred EEEcCCCCEEEEEEEecCCC--CCCccEEEEEcCCCCCC---CCchhhcchhhCCCEEEEecCCCCCCcccCCCCccccc
Confidence 34445688999999999842 56789999999977653 23334457788999999999999775432100000 0
Q ss_pred ----CCc---------------cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 590 ----GKV---------------GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 590 ----~~~---------------~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
..+ ....++|+.++++++.+++.+|.++|+|+|+|+||.+++.++.++| .++++|+.+|.
T Consensus 147 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~v~~~vl~~p~ 225 (337)
T 1vlq_A 147 GPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPF 225 (337)
T ss_dssp SSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCC
T ss_pred ccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-CccEEEECCCc
Confidence 000 0134789999999999987788899999999999999999999988 58899988885
Q ss_pred cc-hhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004149 651 CN-LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 651 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~ 729 (771)
.. +..+........+.....+.. . ...........+...+|...+.++++|+|+++|+.|.++|++++.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~~~~~~~~~ 300 (337)
T 1vlq_A 226 LCHFRRAVQLVDTHPYAEITNFLK----T-HRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 300 (337)
T ss_dssp SCCHHHHHHHCCCTTHHHHHHHHH----H-CTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred ccCHHHHHhcCCCcchHHHHHHHH----h-CchhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCchhHHHHHHh
Confidence 43 332221111111111110000 0 00001122233445677778889999999999999999999999999888
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++. +++++++++++|.+. ..+..+.+.+||.++|+
T Consensus 301 l~~---~~~~~~~~~~gH~~~----~~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 301 YAG---PKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 335 (337)
T ss_dssp CCS---SEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred cCC---CcEEEEcCCCCCCCc----chhhHHHHHHHHHHHHh
Confidence 764 589999999999863 34677899999999874
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-23 Score=210.69 Aligned_cols=225 Identities=18% Similarity=0.179 Sum_probs=162.8
Q ss_pred cCCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 515 KGAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~---~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
..+|..+...+| |+.. .+.++.|+||++||+++.... ..|...+..|+++||.|+++|+||.+.++
T Consensus 26 ~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~~--------- 95 (283)
T 3bjr_A 26 KLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQ--------- 95 (283)
T ss_dssp ECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTCS---------
T ss_pred ecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCccc---------
Confidence 334555666777 6632 144678999999997753322 34667888899999999999999965432
Q ss_pred CccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhCCCc-------------eeEEEecCCccchh
Q 004149 591 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK-------------FVAAAARNPLCNLA 654 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~~-------------~~a~v~~~p~~~~~ 654 (771)
........|+.++++++.+.. .+++++|+|+|||+||.+++.++.++|+. ++++++.+|..+..
T Consensus 96 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~ 175 (283)
T 3bjr_A 96 PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVISPL 175 (283)
T ss_dssp SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEEEESCCCCTT
T ss_pred cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEEEcCCccccc
Confidence 112234778999999988753 36778999999999999999999999987 89999999987532
Q ss_pred hhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
....... . ....+. ..+...++...+.++.+|+|+++|++|..+|++++..+++.+++.+
T Consensus 176 ~~~~~~~-------~-----~~~~~~--------~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g 235 (283)
T 3bjr_A 176 LGFPKDD-------A-----TLATWT--------PTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAK 235 (283)
T ss_dssp SBC--------------------CCC--------CCGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTT
T ss_pred ccccccc-------c-----hHHHHH--------HHhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCC
Confidence 1100000 0 000000 0133456666778889999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCC------------ChHHHHHHHHHHHHHH
Q 004149 735 VETKVIVFPNDVHGIERPQ------------SDFESFLNIGLWFKKY 769 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~------------~~~~~~~~i~~wl~~~ 769 (771)
.+++++++++++|.+.... ...++.+.+.+||+++
T Consensus 236 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 236 IPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp CCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 9999999999999765321 2247788999999864
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=205.35 Aligned_cols=240 Identities=10% Similarity=0.055 Sum_probs=164.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.+++++++.|. ..+.|+||++||++.......|...+..|+++||.|+++|+||.+....... .....
T Consensus 28 ~~~g~~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~----~~~~~ 99 (270)
T 3pfb_A 28 ERDGLQLVGTREEPF----GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFE----NMTVL 99 (270)
T ss_dssp EETTEEEEEEEEECS----SSSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGG----GCCHH
T ss_pred ccCCEEEEEEEEcCC----CCCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCCCCCC----ccCHH
Confidence 447889999999886 2357999999997766434457778889999999999999999554432110 01112
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
..++|+.++++++.++. +.++++|+|||+||.+++.++.++|++++++|+.+|.................+.......
T Consensus 100 ~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (270)
T 3pfb_A 100 NEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPD 177 (270)
T ss_dssp HHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETTEECCTTSCCS
T ss_pred HHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhccccCcccccc
Confidence 33678889999988763 3469999999999999999999999999999999998765432111000000000000000
Q ss_pred CCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC
Q 004149 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
................+...+....+.++++|+|+++|++|.++|++.+..+.+.+. +++++++++++|.+. .+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~~ 252 (270)
T 3pfb_A 178 RLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQ----NSTLHLIEGADHCFS-DSY 252 (270)
T ss_dssp EEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHCS----SEEEEEETTCCTTCC-THH
T ss_pred cccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhCC----CCeEEEcCCCCcccC-ccc
Confidence 000000000111223334445566788899999999999999999999888877754 489999999999876 444
Q ss_pred hHHHHHHHHHHHHHH
Q 004149 755 DFESFLNIGLWFKKY 769 (771)
Q Consensus 755 ~~~~~~~i~~wl~~~ 769 (771)
..++.+.+.+||+++
T Consensus 253 ~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 253 QKNAVNLTTDFLQNN 267 (270)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHhhc
Confidence 567888999998765
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=195.78 Aligned_cols=201 Identities=20% Similarity=0.244 Sum_probs=156.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC---CCcc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP---GKVG 593 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~---~~~~ 593 (771)
+|.++.++++.|++ +.|+||++||++.......+...+..|+++||.|+++|+|| +|.+...... ....
T Consensus 20 ~g~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~~~~ 91 (223)
T 2o2g_A 20 GEVKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLT---QEEEEIDLRTRHLRFDI 91 (223)
T ss_dssp TTEEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSC---HHHHHHHHHHCSSTTCH
T ss_pred CCeEEEEEEecCCC-----CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCC---cCCCCccchhhcccCcH
Confidence 67899999999862 57999999997765433244567888999999999999998 5544322111 0111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
....+|+.++++++..+..++.++++++|||+||.+++.++.++|++++++|+.+|..+..
T Consensus 92 ~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~------------------- 152 (223)
T 2o2g_A 92 GLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA------------------- 152 (223)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC-------------------
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC-------------------
Confidence 2236788999999998877888999999999999999999999999999999998864310
Q ss_pred CCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004149 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
...+.++++|+|+++|++|..+|.. ..+.+.+.+.+++++++++++|.+..++
T Consensus 153 -----------------------~~~~~~~~~P~l~i~g~~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~H~~~~~~ 205 (223)
T 2o2g_A 153 -----------------------PSALPHVKAPTLLIVGGYDLPVIAM----NEDALEQLQTSKRLVIIPRASHLFEEPG 205 (223)
T ss_dssp -----------------------TTTGGGCCSCEEEEEETTCHHHHHH----HHHHHHHCCSSEEEEEETTCCTTCCSTT
T ss_pred -----------------------HHHHhcCCCCEEEEEccccCCCCHH----HHHHHHhhCCCeEEEEeCCCCcccCChH
Confidence 0234557799999999999999633 2345556667899999999999987666
Q ss_pred ChHHHHHHHHHHHHHHhC
Q 004149 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~wl~~~l~ 771 (771)
...++.+.+.+||+++|+
T Consensus 206 ~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 206 ALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 667899999999999986
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=194.48 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=157.6
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
...+| ++.++++.|. .++.|+||++||.+... ....+...+..|+++||.|+++|+||.+..... .
T Consensus 29 ~~~~g-~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~------~ 97 (249)
T 2i3d_A 29 NGPAG-RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE------F 97 (249)
T ss_dssp EETTE-EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------C
T ss_pred ECCCc-eEEEEEEcCC----CCCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCC------C
Confidence 34455 8999988875 25679999999964322 112346678889999999999999995433221 1
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.......+|+.++++++.++. .+.++++|+|||+||.+++.++.++|+ ++++|+.+|..+...
T Consensus 98 ~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--------------- 160 (249)
T 2i3d_A 98 DHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD--------------- 160 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC---------------
T ss_pred CCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh---------------
Confidence 122334689999999998875 477799999999999999999999998 999999988754110
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh-CCCCEEEEEeCCCCccC
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE-KGVETKVIVFPNDVHGI 749 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~ 749 (771)
...+.++++|+|+++|++|..+|++.++++++.+.. .+.+++++++++++|.+
T Consensus 161 --------------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~ 214 (249)
T 2i3d_A 161 --------------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFF 214 (249)
T ss_dssp --------------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTC
T ss_pred --------------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCccc
Confidence 122456789999999999999999999999999986 45579999999999988
Q ss_pred CCCCChHHHHHHHHHHHHHHhC
Q 004149 750 ERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
. ....++++.+.+||+++++
T Consensus 215 ~--~~~~~~~~~i~~fl~~~l~ 234 (249)
T 2i3d_A 215 N--GKVDELMGECEDYLDRRLN 234 (249)
T ss_dssp T--TCHHHHHHHHHHHHHHHHT
T ss_pred c--cCHHHHHHHHHHHHHHhcC
Confidence 6 4567889999999998863
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=206.23 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=148.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..+.||++||.+.+ ...|..+++.|+++||.|+++|+|| +|.+........ ....++|+.++++++.+.
T Consensus 49 G~~~~VlllHG~~~s--~~~~~~la~~La~~Gy~Via~Dl~G---hG~S~~~~~~~~-~~~~~~d~~~~~~~l~~~---- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGS--PQSMRFLAEGFARAGYTVATPRLTG---HGTTPAEMAAST-ASDWTADIVAAMRWLEER---- 118 (281)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTT---SSSCHHHHHTCC-HHHHHHHHHHHHHHHHHH----
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEECCCC---CCCCCccccCCC-HHHHHHHHHHHHHHHHhC----
Confidence 345679999996554 4468889999999999999999999 444432211111 112367888888888765
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-----hcCCCCCcch--hhhhccCCCCCcCCCC-CChh
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----VGTTDIPDWC--YVESYGSKGKDSFTES-PSVE 686 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 686 (771)
.++++|+||||||.+++.++.++|++++++|+.+|....... .......... ................ ....
T Consensus 119 ~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
T 4fbl_A 119 CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVP 198 (281)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEGG
T ss_pred CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCchH
Confidence 368999999999999999999999999999999987643211 0000110000 0000000000000000 0001
Q ss_pred hHHHHhhc--CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004149 687 DLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 687 ~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
....+... .....+.++++|+|+++|++|.++|++.++.+++.+.. .+++++++++++|.+.......++.+.|.+
T Consensus 199 ~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~~--~~~~l~~~~~~gH~~~~e~~~e~v~~~i~~ 276 (281)
T 4fbl_A 199 AIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGS--TEKELLWLENSYHVATLDNDKELILERSLA 276 (281)
T ss_dssp GHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHHH
T ss_pred HHHHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCCC--CCcEEEEECCCCCcCccccCHHHHHHHHHH
Confidence 11111100 11234678999999999999999999999999887753 468999999999987655556788999999
Q ss_pred HHHHH
Q 004149 765 WFKKY 769 (771)
Q Consensus 765 wl~~~ 769 (771)
||++|
T Consensus 277 FL~~H 281 (281)
T 4fbl_A 277 FIRKH 281 (281)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99986
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=198.49 Aligned_cols=209 Identities=18% Similarity=0.153 Sum_probs=158.7
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhc----
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS---- 587 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~---- 587 (771)
++...+|.++.++++.|+ .++.|+||++||.+.. ...+...+..|+++||.|+++|+||.+..+......
T Consensus 7 ~~~~~~g~~l~~~~~~p~----~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~ 80 (236)
T 1zi8_A 7 SIQSYDGHTFGALVGSPA----KAPAPVIVIAQDIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQ 80 (236)
T ss_dssp CEECTTSCEECEEEECCS----SCSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTCHHH
T ss_pred EEecCCCCeEEEEEECCC----CCCCCEEEEEcCCCCC--CHHHHHHHHHHHhCCcEEEeccccccCCCcccccccchhh
Confidence 344567888999999886 3568999999997654 346777888999999999999999865443211000
Q ss_pred -------CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC
Q 004149 588 -------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 660 (771)
Q Consensus 588 -------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 660 (771)
..........+|+.++++++.++..++ ++++|+|||+||.+++.++.++| ++++++.+|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~------- 150 (236)
T 1zi8_A 81 REQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE------- 150 (236)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG-------
T ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc-------
Confidence 000011223678899999998775444 79999999999999999999988 8888877764210
Q ss_pred CCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004149 661 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
++...+.++++|+|+++|++|..+|++.++.+++.+++.+ +++++
T Consensus 151 ----------------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~ 195 (236)
T 1zi8_A 151 ----------------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVH 195 (236)
T ss_dssp ----------------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEE
T ss_pred ----------------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEE
Confidence 1233456778999999999999999999999999997655 79999
Q ss_pred EeCCCCccCCCCCC-------hHHHHHHHHHHHHHHhC
Q 004149 741 VFPNDVHGIERPQS-------DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 741 ~~~~~~H~~~~~~~-------~~~~~~~i~~wl~~~l~ 771 (771)
++++++|.+..... ..+.++.+.+||+++|+
T Consensus 196 ~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 233 (236)
T 1zi8_A 196 WYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQS 233 (236)
T ss_dssp EETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC
T ss_pred EECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcC
Confidence 99999998775432 34688999999998874
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-22 Score=207.30 Aligned_cols=228 Identities=16% Similarity=0.208 Sum_probs=162.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
++...+| ++.+++|.|++ ...|+||++|||++... ...+...+..|++ .||.|+++|||+++++
T Consensus 67 ~~~~~~g-~i~~~~~~p~~----~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~--------- 132 (326)
T 3ga7_A 67 AVPTPYG-DVTTRLYSPQP----TSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQA--------- 132 (326)
T ss_dssp EECCTTS-CEEEEEEESSS----SCSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTS---------
T ss_pred EeecCCC-CeEEEEEeCCC----CCCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCC---------
Confidence 3344556 89999999973 22399999999884432 3456677888887 8999999999986553
Q ss_pred CCccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhCCCc------eeEEEecCCccchhhhhcCC
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK------FVAAAARNPLCNLALMVGTT 660 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~~------~~a~v~~~p~~~~~~~~~~~ 660 (771)
.....++|+.++++|+.++. .+|++||+|+|+|+||.+++.++.++++. ++++++.+|+.+......
T Consensus 133 --~~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~-- 208 (326)
T 3ga7_A 133 --RYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVS-- 208 (326)
T ss_dssp --CTTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCSCSCCHH--
T ss_pred --CCCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccccCCChh--
Confidence 12335789999999999863 47899999999999999999999877654 899999999865421100
Q ss_pred CCCcchhhhhccCCCCCcCCCCCChhhHHHH---------hhcCcc-----ccccCCCCcEEEEeeCCCCccCcHHHHHH
Q 004149 661 DIPDWCYVESYGSKGKDSFTESPSVEDLTRF---------HSKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQY 726 (771)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~sp~-----~~~~~i~~P~Lii~G~~D~~vp~~~~~~~ 726 (771)
...+... .. .........+ ...+|. ..+.+..+|+||+||+.|+++ .++..+
T Consensus 209 -------~~~~~~~----~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~ 274 (326)
T 3ga7_A 209 -------RRLFGGA----WD-GLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLL 274 (326)
T ss_dssp -------HHHCCCT----TT-TCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHH
T ss_pred -------HhhhcCC----CC-CCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHH
Confidence 0000000 00 0000110000 011221 133345679999999999998 588999
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHHhC
Q 004149 727 ARALREKGVETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l~ 771 (771)
+++|++.|+++++++|++++|++... +...++++.+.+||+++|+
T Consensus 275 ~~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~ 323 (326)
T 3ga7_A 275 HQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMK 323 (326)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998532 2346789999999999873
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-21 Score=224.88 Aligned_cols=310 Identities=12% Similarity=0.081 Sum_probs=196.2
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecC-CccccccceEEEeCCCCCeEEEEecCCC--
Q 004149 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAP-FPVEMTGASAVVPSPSGSKLLVVRNPEN-- 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~~~~~~~~~~SPdG~~la~~~~~~~-- 121 (771)
..+.+++||+.++.. + +.|+++++.++ +..++.... +.........++|||||++|||..+...
T Consensus 20 ~~~~w~~dg~~~~~~----~-------~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ----E-------NNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCEEECSSSEEEEEE----T-------TEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred cccEECCCCcEEEEc----C-------CcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 345567899755542 2 36777776433 333332221 1111111234899999999999886421
Q ss_pred ---CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004149 122 ---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 122 ---~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
....+++++ .+++.++++..... ...++|||||++|||++
T Consensus 87 r~~~~~~~~~~d~~~~~~~~l~~~~~~----------~~~~~~SPdG~~la~~~-------------------------- 130 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLITEERIPNN----------TQWVTWSPVGHKLAYVW-------------------------- 130 (740)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCCCTT----------EEEEEECSSTTCEEEEE--------------------------
T ss_pred EEccceEEEEEECCCCcEEEcccCCCc----------ceeeEECCCCCEEEEEE--------------------------
Confidence 113456655 45554443322222 25899999999999973
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC------------------ccceEEEecCCCCCccEEE
Q 004149 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~------------------~~~~~~wspDg~~~~~~l~ 259 (771)
+..||++|+.+++.++++ ..+.. ....+.|||||+. |+
T Consensus 131 -------------------~~~i~~~~~~~~~~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~----la 186 (740)
T 4a5s_A 131 -------------------NNDIYVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LA 186 (740)
T ss_dssp -------------------TTEEEEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EE
T ss_pred -------------------CCeEEEEECCCCceEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCE----EE
Confidence 257999999999988884 11111 1135899999999 99
Q ss_pred EEeecCcc-ee----------------eeeeeec----cCCceeEEEecccccchhhhhhhhcCCCCC---C---cceec
Q 004149 260 FVGWSSET-RK----------------LGIKYCY----NRPCALYAVRVSLYKSEASELELKESSSED---L---PVVNL 312 (771)
Q Consensus 260 ~~~~~~~~-~~----------------~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---~---~~~~l 312 (771)
|.+..... .. ..+.|.. +....|+++|+ ++ + ..++|
T Consensus 187 ~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~-----------------~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 187 YAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQI 249 (740)
T ss_dssp EEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET-----------------TSCCSSSCCCEEEE
T ss_pred EEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC-----------------CCCCCCCcceEEEe
Confidence 98754331 10 0011111 12236899998 66 5 55666
Q ss_pred CC------CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC----C---CCCccceeeEEecccccC
Q 004149 313 TE------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG----N---FSSLEKIVDVIPVVQCAE 379 (771)
Q Consensus 313 t~------~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~----~---~~~~~~~~~~~~~~~~~~ 379 (771)
.. ....+..|+|||||+.+++..++. .....|+++|+.+++ . ..+....
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~-------~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~----------- 311 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRI-------QNYSVMDICDYDESSGRWNCLVARQHIEMS----------- 311 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESS-------TTEEEEEEEEEETTTTEEEECGGGCEEEEC-----------
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC-------CCEEEEEEEECCCCccccceeEEEEeeecc-----------
Confidence 54 455678999999999888887764 234679999998876 1 1111000
Q ss_pred CCCCcccccC--CCCCCccccCCCEEE-EEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC---
Q 004149 380 GDCFPGLYSS--SILSNPWLSDGCTML-LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS--- 453 (771)
Q Consensus 380 ~~~f~g~~~~--~~~~~~~s~dg~~l~-~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~--- 453 (771)
... |.. ....+.|||||+.|+ +.+..++..+||.+++++++.++|+.....+. ..+++|++.|+|+++.
T Consensus 312 ~~~----~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~-~~~~~d~~~i~f~~~~~~~ 386 (740)
T 4a5s_A 312 TTG----WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVI-GIEALTSDYLYYISNEYKG 386 (740)
T ss_dssp SSS----CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEE-EEEEECSSEEEEEESCGGG
T ss_pred CCc----eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEE-EEEEEeCCEEEEEEecCCC
Confidence 000 000 124688999999988 66667788999999999999999998765433 3455779999998875
Q ss_pred CCCCCeEEEEEecc
Q 004149 454 PVDVPQVKYGYFVD 467 (771)
Q Consensus 454 ~~~p~~l~~~~~~~ 467 (771)
...-..||.+++.+
T Consensus 387 ~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 387 MPGGRNLYKIQLID 400 (740)
T ss_dssp CTTCBEEEEEETTE
T ss_pred CCceeEEEEEECCC
Confidence 12335688777654
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-22 Score=206.22 Aligned_cols=224 Identities=17% Similarity=0.259 Sum_probs=158.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+.+++|.|+ ..++.|+||++|||++.... ..+...+..|++ .||.|+++|||+++++ .....+
T Consensus 66 ~i~~~~~~p~---~~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~-----------~~~~~~ 131 (322)
T 3fak_A 66 GCAAEWVRAP---GCQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEH-----------PFPAAV 131 (322)
T ss_dssp TEEEEEEECT---TCCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTS-----------CTTHHH
T ss_pred CeEEEEEeCC---CCCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCC-----------CCCcHH
Confidence 4888899997 34578999999998865433 245556666765 6999999999986553 223457
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCc----eeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
+|+.++++|+.++ .+|++||+|+|+|+||++++.++.+.++. ++++|+.+|+.+...... .+ ......
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~-----~~--~~~~~~ 203 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTND-----SF--KTRAEA 203 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCT-----HH--HHTTTT
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCc-----CH--HHhCcc
Confidence 9999999999998 57999999999999999999999876554 899999999987532100 00 000000
Q ss_pred CCCCcCCCCCChh-hHHH--------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 674 KGKDSFTESPSVE-DLTR--------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 674 ~~~~~~~~~~~~~-~~~~--------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
..+....... .... ....+|+...-...+|+||++|+.|.++ .++..++++|++.|+++++++|++
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~g 278 (322)
T 3fak_A 204 ---DPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVLL--DDSIKLDAKAKADGVKSTLEIWDD 278 (322)
T ss_dssp ---CCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETT
T ss_pred ---CcccCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCccH--HHHHHHHHHHHHcCCCEEEEEeCC
Confidence 0000000000 0000 1123444322223369999999999885 688999999999999999999999
Q ss_pred CCccCCC----CCChHHHHHHHHHHHHHHh
Q 004149 745 DVHGIER----PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 745 ~~H~~~~----~~~~~~~~~~i~~wl~~~l 770 (771)
++|++.. .+...++++.+.+||+++|
T Consensus 279 ~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (322)
T 3fak_A 279 MIHVWHAFHPMLPEGKQAIVRVGEFMREQW 308 (322)
T ss_dssp CCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 9998753 2334678899999999887
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=206.41 Aligned_cols=318 Identities=13% Similarity=0.137 Sum_probs=201.5
Q ss_pred HHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC
Q 004149 32 QDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS 111 (771)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~ 111 (771)
++|..++.+....+ ||++|+|+....+...+.....||++++. +++.+++ ..+..|+|||||+
T Consensus 9 ~~l~~~~~~~~~~~------dG~~i~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l---------~~~~~~~~SpDg~ 71 (347)
T 2gop_A 9 KTFAKFAYLSDPRT------KGELVAYVLTKANLKDNKYENTIVIENLK--NNARRFI---------ENATMPRISPDGK 71 (347)
T ss_dssp -CCCCSCEEEEEEE------ETTEEEEEEEEEETTTTEEEEEEEEEETT--TCCEEEE---------ESCEEEEECTTSS
T ss_pred ccceeeEEcccceE------CCcEEEEEEeecCcccCCccceEEEEeCC--CCceEEc---------ccCCCeEECCCCC
Confidence 45556666655444 89999999887766556667889998764 3344554 2367899999999
Q ss_pred eEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004149 112 KLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 112 ~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
+|||++...+ +..++|.++ .+++.++++.... . ..+.|||||++|+|.+.......
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~----------~~~~wspdg~~l~~~~~~~~~~~----------- 129 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-I----------RSLEWNEDSRKLLIVGFKRREDE----------- 129 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-E----------EEEEECTTSSEEEEEEECCCC-------------
T ss_pred EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-c----------cceeECCCCCEEEEEEccCCCcC-----------
Confidence 9999987542 445688888 6677777776543 3 58999999999999975421100
Q ss_pred CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcce
Q 004149 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 190 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
.........|..+ |..+......+||++|+.+++. +.++ . . .+..+.||||| . ++... .....
T Consensus 130 -----~~~~~~~~~~~~~-g~~~~~~~~~~l~~~d~~~~~~~~~l~--~-~-~~~~~~~spdg-~----~~~~~-~~~~~ 193 (347)
T 2gop_A 130 -----DFIFEDDVPAWFD-DLGFFDGEKTTFWIFDTESEEVIEEFE--K-P-RFSSGIWHRDK-I----VVNVP-HREII 193 (347)
T ss_dssp ------------CCCC----------CEEEEEEEETTTTEEEEEEE--E-E-TTCEEEEETTE-E----EEEEE-CCCSS
T ss_pred -----CcEEEcccceeec-CcccccCccceEEEEECCCCeEEeeec--C-C-CcccccCCCCe-E----EEEEe-ccccc
Confidence 0000011112222 2222223457899999999988 7773 3 3 77899999998 5 54443 22100
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc
Q 004149 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
. +.....+||.+| . ++.++|+.. .....+ ||||++|+|.+.... ......
T Consensus 194 ~-----~~~~~~~l~~~d-~------------------~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~---~~~~~~ 243 (347)
T 2gop_A 194 P-----QYFKFWDIYIWE-D------------------GKEEKMFEK-VSFYAV--DSDGERILLYGKPEK---KYMSEH 243 (347)
T ss_dssp C-----CSSCCEEEEEEE-T------------------TEEEEEEEE-ESEEEE--EECSSCEEEEECCSS---SCCCSS
T ss_pred c-----cccccccEEEeC-C------------------CceEEeccC-cceeeE--CCCCCEEEEEEcccc---CCcccc
Confidence 0 000134788887 2 445666655 444444 999999999987642 111234
Q ss_pred ccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC-CccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 349 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.+|+++| +++.+.++..... .+.. +.|+ || ++++...++..+|| ++ +|+.++
T Consensus 244 ~~l~~~d--~~~~~~l~~~~~~-------------------~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~--~g~~~~ 296 (347)
T 2gop_A 244 NKLYIYD--GKEVMGILDEVDR-------------------GVGQAKIKD-GK--VYFTLFEEGSVNLY-IW--DGEIKP 296 (347)
T ss_dssp CEEEEEC--SSCEEESSTTCCS-------------------EEEEEEEET-TE--EEEEEEETTEEEEE-EE--SSSEEE
T ss_pred ceEEEEC--CCceEeccccCCc-------------------ccCCccEEc-Cc--EEEEEecCCcEEEE-Ec--CCceEE
Confidence 6799998 4444444332110 1223 6799 87 77888888889999 99 577777
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 428 l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
++.....+....+++ .++++.++...|.+||+.+
T Consensus 297 ~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 297 IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 776544344445555 6888888999999999986
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=213.81 Aligned_cols=241 Identities=14% Similarity=0.144 Sum_probs=166.4
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC--
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-- 589 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~-- 589 (771)
.+...+|.++.++++.|++ .++.|+||++||++... ..|.... .++++||.|+++|+||.++++........
T Consensus 86 ~~~~~~g~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~--~~~~~~~-~~~~~G~~v~~~D~rG~g~s~~~~~~~~~~~ 159 (346)
T 3fcy_A 86 YFTGVRGARIHAKYIKPKT---EGKHPALIRFHGYSSNS--GDWNDKL-NYVAAGFTVVAMDVRGQGGQSQDVGGVTGNT 159 (346)
T ss_dssp EEECGGGCEEEEEEEEESC---SSCEEEEEEECCTTCCS--CCSGGGH-HHHTTTCEEEEECCTTSSSSCCCCCCCSSCC
T ss_pred EEEcCCCCEEEEEEEecCC---CCCcCEEEEECCCCCCC--CChhhhh-HHHhCCcEEEEEcCCCCCCCCCCCcccCCCC
Confidence 4455578899999999983 56789999999987664 3344333 56789999999999997665433211000
Q ss_pred --C--------C----ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch-h
Q 004149 590 --G--------K----VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-A 654 (771)
Q Consensus 590 --~--------~----~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~ 654 (771)
+ . .....++|+.++++++.....+|.+||+|+|||+||.+++.++.++|+ ++++|+.+|.... .
T Consensus 160 ~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl~~p~~~~~~ 238 (346)
T 3fcy_A 160 LNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVSEYPFLSDYK 238 (346)
T ss_dssp SBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEEESCSSCCHH
T ss_pred cCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEECCCcccCHH
Confidence 0 0 001125899999999988877888999999999999999999999998 9999999997542 2
Q ss_pred hhhcCC-CCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 655 LMVGTT-DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 655 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
...... ....+.....+... ..............+...++...+.++++|+|+++|+.|.++|++.+.++++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~- 315 (346)
T 3fcy_A 239 RVWDLDLAKNAYQEITDYFRL--FDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFAAYNNIQS- 315 (346)
T ss_dssp HHHHTTCCCGGGHHHHHHHHH--HCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHHHHHHTTCCS-
T ss_pred HHhhccccccchHHHHHHHHh--cCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHHHHHHHhcCC-
Confidence 221111 11111100000000 00000111222334445566677889999999999999999999988888777653
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+++++++++++|.+. .++.+.+.+||++.
T Consensus 316 --~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~l 344 (346)
T 3fcy_A 316 --KKDIKVYPDYGHEPM-----RGFGDLAMQFMLEL 344 (346)
T ss_dssp --SEEEEEETTCCSSCC-----TTHHHHHHHHHHTT
T ss_pred --CcEEEEeCCCCCcCH-----HHHHHHHHHHHHHh
Confidence 689999999999986 35678999999864
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-23 Score=210.60 Aligned_cols=228 Identities=17% Similarity=0.200 Sum_probs=164.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++.++++.|. +.|+||++||++.. ...|...+..|+++||.|+++|+||. |.+.... ........
T Consensus 14 ~g~~l~~~~~~p~------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~---g~s~~~~-~~~~~~~~ 81 (290)
T 3ksr_A 14 GQDELSGTLLTPT------GMPGVLFVHGWGGS--QHHSLVRAREAVGLGCICMTFDLRGH---EGYASMR-QSVTRAQN 81 (290)
T ss_dssp TTEEEEEEEEEEE------SEEEEEEECCTTCC--TTTTHHHHHHHHTTTCEEECCCCTTS---GGGGGGT-TTCBHHHH
T ss_pred CCeEEEEEEecCC------CCcEEEEeCCCCCC--cCcHHHHHHHHHHCCCEEEEeecCCC---CCCCCCc-ccccHHHH
Confidence 5789999999985 67999999997765 44677888999999999999999994 4433211 11112234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
.+|+.++++++.+++.++.++|+|+|||+||.+++.++.++| ++++++.+|........ ..+...... ....
T Consensus 82 ~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~---~~~~~~~~~---~~~~ 153 (290)
T 3ksr_A 82 LDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHW---DQPKVSLNA---DPDL 153 (290)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCT---TSBHHHHHH---STTH
T ss_pred HHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhh---hcccccccC---Chhh
Confidence 689999999999887778889999999999999999999887 77888888865422110 000000000 0000
Q ss_pred CcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004149 677 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
..+..... .....++...+.++++|+|+++|+.|.+++++++..+++.++..+ +++++++++++|.+.......
T Consensus 154 ~~~~~~~~-----~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~~~~ 227 (290)
T 3ksr_A 154 MDYRRRAL-----APGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIAGADHALSVKEHQQ 227 (290)
T ss_dssp HHHTTSCC-----CGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEETTCCTTCCSHHHHH
T ss_pred hhhhhhhh-----hhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcCCCCCCCCcchHHH
Confidence 00000000 011122334566788999999999999999999999999997765 789999999999887665667
Q ss_pred HHHHHHHHHHHHHh
Q 004149 757 ESFLNIGLWFKKYC 770 (771)
Q Consensus 757 ~~~~~i~~wl~~~l 770 (771)
++++.+.+||++++
T Consensus 228 ~~~~~i~~fl~~~~ 241 (290)
T 3ksr_A 228 EYTRALIDWLTEMV 241 (290)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88899999999875
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=203.72 Aligned_cols=243 Identities=17% Similarity=0.155 Sum_probs=182.6
Q ss_pred CCCCeEEEEecCCCCC--CeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 108 PSGSKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 108 PdG~~la~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
+.+++++|++...++. ..++..+ +++..+.++.....+ .+++|||||++|+|.+.+.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v----------~~~~~Spdg~~la~~s~~~---------- 200 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES---------- 200 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT----------
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcc----------eeeEEcCCCCEEEEEEecC----------
Confidence 4588999998764221 4566555 444555555443333 5899999999999987542
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+...|++||+.+++.+.+ ......+..++|||||+. |+|++..
T Consensus 201 -------------------------------~~~~i~~~d~~tg~~~~l--~~~~~~~~~~~~spdg~~----la~~~~~ 243 (415)
T 2hqs_A 201 -------------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSK 243 (415)
T ss_dssp -------------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECT
T ss_pred -------------------------------CCcEEEEEECCCCcEEEe--ecCCCcccCEEEcCCCCE----EEEEEec
Confidence 236899999999998888 444456789999999999 9988632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
+....||++|+ .+++.++++.....+..+.|||||++|+|.+.+. |
T Consensus 244 ------------~g~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~----g- 289 (415)
T 2hqs_A 244 ------------TGSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----G- 289 (415)
T ss_dssp ------------TSSCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----S-
T ss_pred ------------CCCceEEEEEC-----------------CCCCEEeCcCCCCcccceEECCCCCEEEEEECCC----C-
Confidence 23347999998 7788888988887889999999999999998653 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.+.++.... ....++|||||+.|++.+...+...|+.+|+.+++
T Consensus 290 ---~~~i~~~d~~~~~~~~l~~~~~--------------------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 290 ---RPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp ---SCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred ---CcEEEEEECCCCCEEEEecCCC--------------------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 4579999998876544332211 12356899999999988877677889999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+.++... ....+.|+|||+.|++...... ...|++.++.
T Consensus 347 ~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~ 386 (415)
T 2hqs_A 347 VQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTD 386 (415)
T ss_dssp EEECCCSS-SCEEEEECTTSSEEEEEEEETT-EEEEEEEETT
T ss_pred EEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECC
Confidence 98887654 5667899999999988876443 4468888765
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=203.10 Aligned_cols=240 Identities=16% Similarity=0.147 Sum_probs=164.6
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC--
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-- 589 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~-~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~-- 589 (771)
+...+|.++.++++.|++ .++.|+||++||+++. . ..+ .....|+++||.|+++|+||.+++.........
T Consensus 61 ~~~~~g~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~g~~v~~~d~rg~g~s~~~~~~~~~~~ 134 (318)
T 1l7a_A 61 YKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASYD--GEI-HEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCSG--GGH-HHHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEccCCCEEEEEEEeeCC---CCCccEEEEEcCCCCCCC--CCc-ccccchhhCCcEEEEecCCCCCCCCCcccccCCcc
Confidence 444567899999999974 5678999999997754 2 223 333477889999999999997765433210000
Q ss_pred -----CCc-------cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc-hhhh
Q 004149 590 -----GKV-------GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALM 656 (771)
Q Consensus 590 -----~~~-------~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~-~~~~ 656 (771)
... ....++|+.++++++.++..+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|... ....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~~p~~~~~~~~ 213 (318)
T 1l7a_A 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHHH
T ss_pred ccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEecCCcccCHHHH
Confidence 000 12347899999999999877888999999999999999999999886 677777888643 2222
Q ss_pred hcCCCCCcchhhhhccCCCCCcCC-CCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004149 657 VGTTDIPDWCYVESYGSKGKDSFT-ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
........+.....+.. ... ..............++...+.++++|+|+++|+.|..+|++++.++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~--- 286 (318)
T 1l7a_A 214 IDVALEQPYLEINSFFR----RNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET--- 286 (318)
T ss_dssp HHHCCSTTTTHHHHHHH----HSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCS---
T ss_pred HhcCCcCccHHHHHHHh----ccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHHhhcCC---
Confidence 11111111111000000 000 0000111222334456667888899999999999999999999998887754
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+++++++++++|.. ..+....+.+||+++|+
T Consensus 287 ~~~~~~~~~~~H~~-----~~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 287 KKELKVYRYFGHEY-----IPAFQTEKLAFFKQILK 317 (318)
T ss_dssp SEEEEEETTCCSSC-----CHHHHHHHHHHHHHHHC
T ss_pred CeeEEEccCCCCCC-----cchhHHHHHHHHHHHhC
Confidence 48999999999983 24678999999999885
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=202.83 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=159.1
Q ss_pred CceEEEEEEecCCCC--------------CCCCCcEEEEEcCCCCCCCCC-c--chHHHHHHH-HCCcEEEEECCCCCCC
Q 004149 518 QKPFEAIFVSSSHKK--------------DCSCDPLIVVLHGGPHSVSLS-S--YSKSLAFLS-SVGYSLLIVNYRGSLG 579 (771)
Q Consensus 518 g~~l~~~~~~P~~~~--------------~~~~~p~vv~~HGg~~~~~~~-~--~~~~~~~la-~~G~~V~~~d~rG~~~ 579 (771)
+..+.+.+|.|++.. ..++.|+||++|||++..... . |...+..|+ +.||.|+++||||.++
T Consensus 80 ~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~ 159 (351)
T 2zsh_A 80 RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPE 159 (351)
T ss_dssp TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSEEEEECCCCTTT
T ss_pred CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 345778899997542 246789999999987654332 2 667788888 7899999999999654
Q ss_pred CChhhhhcCCCCccccchhhHHHHHHHHHHcC----CCCCC-eEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCcc
Q 004149 580 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLC 651 (771)
Q Consensus 580 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~ 651 (771)
+. ....++|+.++++|+.++. .+|.+ ||+|+|||+||.+++.++.++++ +++++|+.+|+.
T Consensus 160 ~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~v~~~vl~~p~~ 228 (351)
T 2zsh_A 160 NP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMF 228 (351)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCCCCEEEEESCCC
T ss_pred CC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCCeeEEEEECCcc
Confidence 31 2235789999999998753 47889 99999999999999999998888 899999999987
Q ss_pred chhhhhc----CCCCC--cch----hhhhccCCCCCcCCCCCChhhHHHHhhcCcc----ccccCCCC-cEEEEeeCCCC
Q 004149 652 NLALMVG----TTDIP--DWC----YVESYGSKGKDSFTESPSVEDLTRFHSKSPI----SHISKVKT-PTIFLLGAQDL 716 (771)
Q Consensus 652 ~~~~~~~----~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----~~~~~i~~-P~Lii~G~~D~ 716 (771)
+...... ....+ ... +...+..... . ......+|. ..+.++++ |+|+++|++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~l~~i~~pP~Lii~G~~D~ 297 (351)
T 2zsh_A 229 GGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGE-------D----REHPACNPFSPRGKSLEGVSFPKSLVVVAGLDL 297 (351)
T ss_dssp CCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTC-------C----TTSTTTCTTSTTSCCCTTCCCCEEEEEEETTST
T ss_pred CCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCC-------C----CCCcccCCCCCCccchhhCCCCCEEEEEcCCCc
Confidence 5321100 00000 000 0000000000 0 000011221 23455565 99999999999
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---CCChHHHHHHHHHHHHHH
Q 004149 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---PQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---~~~~~~~~~~i~~wl~~~ 769 (771)
+++ .+..+++.|++.+.+++++++++++|++.. .+...++++.+.+||+++
T Consensus 298 ~~~--~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~~ 351 (351)
T 2zsh_A 298 IRD--WQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAE 351 (351)
T ss_dssp THH--HHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC-
T ss_pred chH--HHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 885 678899999999999999999999998865 244567888999999753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=219.65 Aligned_cols=322 Identities=12% Similarity=0.081 Sum_probs=206.0
Q ss_pred HHhhcCccccc-eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcc-----------cc-
Q 004149 32 QDFTNISSIDK-AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPV-----------EM- 98 (771)
Q Consensus 32 ~~~~~~~~~~~-~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~-----------~~- 98 (771)
+++.+-+.+.. ....+..||||++|+|..... .+.....||++++.+ ++.++++...-.. ..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d---~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (741)
T 2ecf_A 26 EAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKD---SDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARR 100 (741)
T ss_dssp HHHTSSSCTTCCCCEEEEECTTSSEEEEEECCS---SCTTEEEEEEEETTT--CCEEEEECGGGTC--------------
T ss_pred HHHhccCCcCCCCCCCceEecCCCEEEEEeccC---CCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhh
Confidence 44443333333 344667789999999986421 112245788887643 3444444321000 00
Q ss_pred --------ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC---cceEEEecCCcccccccCCCcccceeecCCCCe
Q 004149 99 --------TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETL 166 (771)
Q Consensus 99 --------~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~ 166 (771)
..+..++|||||++|+|.+. ..+++++ .++ ..++++...... ..++|||||++
T Consensus 101 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~-----~~i~~~d~~~~~~~~~~~l~~~~~~~----------~~~~~SPDG~~ 165 (741)
T 2ecf_A 101 ERQRIAAMTGIVDYQWSPDAQRLLFPLG-----GELYLYDLKQEGKAAVRQLTHGEGFA----------TDAKLSPKGGF 165 (741)
T ss_dssp ------CCEESCCCEECTTSSEEEEEET-----TEEEEEESSSCSTTSCCBCCCSSSCE----------EEEEECTTSSE
T ss_pred hhhhhccccCcceeEECCCCCEEEEEeC-----CcEEEEECCCCCcceEEEcccCCccc----------ccccCCCCCCE
Confidence 12578999999999999876 3577666 454 444443332222 58999999999
Q ss_pred EEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCc-----
Q 004149 167 IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS----- 241 (771)
Q Consensus 167 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~----- 241 (771)
|||++. ..|++||+.+++.++++ .....
T Consensus 166 la~~~~---------------------------------------------~~i~~~d~~~g~~~~~~--~~~~~~~~~g 198 (741)
T 2ecf_A 166 VSFIRG---------------------------------------------RNLWVIDLASGRQMQLT--ADGSTTIGNG 198 (741)
T ss_dssp EEEEET---------------------------------------------TEEEEEETTTTEEEECC--CCCCSSEEES
T ss_pred EEEEeC---------------------------------------------CcEEEEecCCCCEEEec--cCCccceecc
Confidence 999731 47999999999988883 32211
Q ss_pred ------------cceEEEecCCCCCccEEEEEeecCccee--------------eeeeee----ccCCceeEEEeccccc
Q 004149 242 ------------VGQVVWAPLNEGLHQYLVFVGWSSETRK--------------LGIKYC----YNRPCALYAVRVSLYK 291 (771)
Q Consensus 242 ------------~~~~~wspDg~~~~~~l~~~~~~~~~~~--------------~g~~~~----~~~~~~l~~~d~~~~~ 291 (771)
+..+.|||||+. |+|.+....... ....|. .+....||++|+
T Consensus 199 ~~~~v~~~~~~~~~~~~~SpDg~~----l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~---- 270 (741)
T 2ecf_A 199 IAEFVADEEMDRHTGYWWAPDDSA----IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP---- 270 (741)
T ss_dssp CCCHHHHHHSCCCCSEEECTTSSC----EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS----
T ss_pred ccceeeeeccccccceEECCCCCE----EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC----
Confidence 467999999999 999875432110 000010 012237999998
Q ss_pred chhhhhhhhcCCCCC-CcceecCC---CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004149 292 SEASELELKESSSED-LPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~-~~~~~lt~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+ ++.+.+.. ....+..+.| |||++|++...... .....|+++|+.+++.+.+...
T Consensus 271 -------------~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~------~~~~~i~~~d~~~g~~~~~~~~ 330 (741)
T 2ecf_A 271 -------------AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD------QKKLDLVEVTLASNQQRVLAHE 330 (741)
T ss_dssp -------------STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT------SSEEEEEEEETTTCCEEEEEEE
T ss_pred -------------CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc------CCeEEEEEEECCCCceEEEEEc
Confidence 67 77666653 3445788999 99999999886431 2356899999988765433221
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceee-EEeecCCE
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS-LLTLDGDN 446 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~-~~s~d~~~ 446 (771)
.. .. |......+.|||||+ +++++..++..+||.++++++ .+.++.....+... .|++|++.
T Consensus 331 ~~----------~~-----~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 331 TS----------PT-----WVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EC----------SS-----CCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTE
T ss_pred CC----------CC-----cCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCE
Confidence 10 00 111235789999999 777777777889999998766 78887765544444 59999999
Q ss_pred EEEEEeCCCC-CCeEEEEEe
Q 004149 447 IIAVSSSPVD-VPQVKYGYF 465 (771)
Q Consensus 447 l~~~~s~~~~-p~~l~~~~~ 465 (771)
|++..+.... ..+||..+.
T Consensus 394 l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEECSSCTTCBEEEEEET
T ss_pred EEEEEeCCCCceEEEEEEEc
Confidence 9888764321 344666554
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=206.27 Aligned_cols=247 Identities=13% Similarity=0.084 Sum_probs=165.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
++...+|..+.++++.|++ .+.++.|+||++||++.. ...+.. .+..|+++||.|+++|+||.+.+.... ...
T Consensus 72 ~~~~~~g~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~---~~~ 145 (367)
T 2hdw_A 72 TFANRYGITLAADLYLPKN-RGGDRLPAIVIGGPFGAV--KEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQP---RNV 145 (367)
T ss_dssp EEECTTSCEEEEEEEEESS-CCSSCEEEEEEECCTTCC--TTSHHHHHHHHHHHTTCEEEEECCTTSTTSCCSS---SSC
T ss_pred EEecCCCCEEEEEEEeCCC-CCCCCCCEEEEECCCCCc--chhhHHHHHHHHHHCCCEEEEECCCCcCCCCCcC---ccc
Confidence 3445568899999999985 235678999999997754 334543 678899999999999999955432211 111
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh-cCCC--------
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-GTTD-------- 661 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-~~~~-------- 661 (771)
.......+|+.++++++.++..++.++++|+|||+||.+++.++.++| .++++|+.+|+....... +...
T Consensus 146 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 224 (367)
T 2hdw_A 146 ASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYDMTRVMSKGYNDSVTLEQRT 224 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCCHHHHHHHTTTTCCCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccccccHHHhhhhccccchHHHH
Confidence 112345789999999999987778899999999999999999999988 589999998863211100 0000
Q ss_pred ------------------------CC---c---ch---hhhhccCCC--CCc---CCCCCChhhHHHHhhcCccccccCC
Q 004149 662 ------------------------IP---D---WC---YVESYGSKG--KDS---FTESPSVEDLTRFHSKSPISHISKV 703 (771)
Q Consensus 662 ------------------------~~---~---~~---~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~sp~~~~~~i 703 (771)
.+ . .. ....+.... ... ............+...++...+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 304 (367)
T 2hdw_A 225 RTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNMPILTYIKEI 304 (367)
T ss_dssp HHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTSCSCTTGGGG
T ss_pred HHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCCChhHhHHhh
Confidence 00 0 00 000000000 000 0000011223445566777788899
Q ss_pred C-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 704 K-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 704 ~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+ +|+|+++|++|. +++.++++++. .+.+++++++++++|..........+.+.+.+||+++|
T Consensus 305 ~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 305 SPRPILLIHGERAH--SRYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367 (367)
T ss_dssp TTSCEEEEEETTCT--THHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSCHHHHHHHHHHHC
T ss_pred cCCceEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHHHHHHHHHHHhhC
Confidence 9 999999999998 77777777665 56789999999999974321111126789999999876
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-21 Score=184.71 Aligned_cols=194 Identities=13% Similarity=0.166 Sum_probs=145.9
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCC---CCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP---HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~---~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
+...+| +++++++.|+ ..++.|+||++||++ .......+...+..|+++||.|+++|+||.+.....
T Consensus 11 ~~~~~g-~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~------ 80 (208)
T 3trd_A 11 IQGPVG-QLEVMITRPK---GIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGR------ 80 (208)
T ss_dssp EECSSS-EEEEEEECCS---SCCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------
T ss_pred EECCCc-eEEEEEEcCC---CCCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCC------
Confidence 445567 9999999986 345789999999954 222233456778899999999999999995543221
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
........+|+.++++++.++ .+.++++|+|||+||.+++.++ .+| +++++|+.+|..+..
T Consensus 81 ~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~--------------- 141 (208)
T 3trd_A 81 YDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYE--------------- 141 (208)
T ss_dssp CCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSG---------------
T ss_pred ccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccC---------------
Confidence 122234578999999999887 3558999999999999999999 667 899999988875100
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
....+..+++|+|+++|++|..+|++.++++++.+.. +++++++++++|.+
T Consensus 142 --------------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~H~~ 192 (208)
T 3trd_A 142 --------------------------GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISS---PVEFVVMSGASHFF 192 (208)
T ss_dssp --------------------------GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHSSS---CCEEEEETTCCSSC
T ss_pred --------------------------CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHccC---ceEEEEeCCCCCcc
Confidence 0122344579999999999999999998888877654 38999999999988
Q ss_pred CCCCChHHHHHHHHHHH
Q 004149 750 ERPQSDFESFLNIGLWF 766 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl 766 (771)
... ..++.+.+.+||
T Consensus 193 ~~~--~~~~~~~i~~fl 207 (208)
T 3trd_A 193 HGR--LIELRELLVRNL 207 (208)
T ss_dssp TTC--HHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHh
Confidence 743 245666666665
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=207.65 Aligned_cols=311 Identities=13% Similarity=0.141 Sum_probs=203.3
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcccccc-ceEEEeCCCCCeEEEEecCCCCCC
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKLLVVRNPENESP 124 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~-~~~~~~SPdG~~la~~~~~~~~~~ 124 (771)
.+..||||++|+|..+. .....+|++++ .+++.++++... .. ...+.|||||++|+|++...
T Consensus 40 ~~~~SpdG~~l~~~~~~------~g~~~l~~~d~--~~~~~~~l~~~~-----~~~~~~~~~spdg~~l~~~~~~~---- 102 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDF------DGNRNYYLLNL--ETQQAVQLTEGK-----GDNTFGGFISTDERAFFYVKNEL---- 102 (396)
T ss_dssp SCCBCTTSCEEEEEECT------TSSCEEEEEET--TTTEEEECCCSS-----CBCTTTCEECTTSSEEEEEETTT----
T ss_pred cCcCCCCCCEEEEEEec------CCCceEEEEEC--CCCcEEEeecCC-----CCccccceECCCCCEEEEEEcCC----
Confidence 35678999999998754 13457888765 344556665443 22 23388999999999998653
Q ss_pred eEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004149 125 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
+++.++ .+++.++++.... . |+|||++|+|.+...... .+.....
T Consensus 103 ~l~~~d~~~~~~~~~~~~~~-------------~--~~~~g~~l~~~~~~~~~~-------------------~~~~~~~ 148 (396)
T 3c5m_A 103 NLMKVDLETLEEQVIYTVDE-------------E--WKGYGTWVANSDCTKLVG-------------------IEILKRD 148 (396)
T ss_dssp EEEEEETTTCCEEEEEECCT-------------T--EEEEEEEEECTTSSEEEE-------------------EEEEGGG
T ss_pred cEEEEECCCCCcEEEEeccc-------------c--cCCCCCEEEeccCCcccc-------------------ccccccc
Confidence 588777 5666566555321 1 788888888864321100 0000112
Q ss_pred ccCCcCcccC-----CccCceEEEEEccCCceeeccCCCCCCccceEEEec-CCCCCccEEEEEeecCcceeeeeeeecc
Q 004149 204 WEEDWGETYA-----GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 204 ~~~d~g~~~~-----~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp-Dg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
|++|....+. ......|+++|+.+++.+.+ ......+..+.||| ||+. |+|++.... ..
T Consensus 149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~ 213 (396)
T 3c5m_A 149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI--HQDTAWLGHPIYRPFDDST----VGFCHEGPH---------DL 213 (396)
T ss_dssp CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCS---------SS
T ss_pred cCCCCcceeeeeeccCCCcceEEEEECCCCcEEee--ccCCcccccceECCCCCCE----EEEEecCCC---------CC
Confidence 3333211111 12457899999999998888 44455677899999 8998 999873110 01
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC--ccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~--~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
...+||.+|+ ++++.+.++... ..+..+.|||||++|+|.+.+. | .....|+++|
T Consensus 214 ~~~~l~~~d~-----------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~----~--~~~~~l~~~d 270 (396)
T 3c5m_A 214 VDARMWLVNE-----------------DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK----G--QTDRVIYKAN 270 (396)
T ss_dssp CSCCCEEEET-----------------TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET----T--TCCEEEEEEC
T ss_pred CCceEEEEEC-----------------CCCceeEeeccCCCccccceEECCCCCEEEEEecCC----C--CccceEEEEE
Confidence 2248999998 677777777642 3477899999999999998764 2 1123499999
Q ss_pred cCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc-CCCEEEEEee-------------eCCeeEEEEEECC
Q 004149 356 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSI-------------WGSSQVIISVNVS 421 (771)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~-dg~~l~~~~~-------------~~~~~~l~~~d~~ 421 (771)
+.+++.+.+.. +++ .. +.|+| ||+.|++... ..+...||.+|+.
T Consensus 271 ~~~g~~~~l~~----------------~~~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 271 PETLENEEVMV----------------MPP-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp TTTCCEEEEEE----------------CCS-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CCCCCeEEeee----------------CCC-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 98766433211 111 11 67999 9997766432 1244689999999
Q ss_pred CCcEEEecCCCC-----------CceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 422 SGELLRITPAES-----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 422 tg~~~~l~~~~~-----------~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+++.++++.... ....+.|++||+.|++..... ...+||+.++.++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 329 AKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPES 385 (396)
T ss_dssp TTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTT
T ss_pred cCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEccc
Confidence 998888875543 134468999999999887654 4567999887654
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-21 Score=200.11 Aligned_cols=245 Identities=15% Similarity=0.161 Sum_probs=164.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|..+.++++.|. ..+.|+||++||++.. ...|...+..|+++||.|+++|+||.+.+.. ......
T Consensus 39 ~~~~~dg~~l~~~~~~p~----~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~---~~~~~~ 109 (342)
T 3hju_A 39 HLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEG---ERMVVS 109 (342)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHTTTEEEEEECCTTSTTSCS---STTCCS
T ss_pred eEEccCCeEEEEEEeCCC----CCCCcEEEEECCCCcc--cchHHHHHHHHHhCCCeEEEEcCCCCcCCCC---cCCCcC
Confidence 345667899999999886 3457999999997765 3478888999999999999999999544322 111111
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcc--hhhh
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW--CYVE 669 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~--~~~~ 669 (771)
.....++|+.++++++..+ .+..+++|+|||+||.+++.++.++|++++++|+.+|........... .... ....
T Consensus 110 ~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~ 186 (342)
T 3hju_A 110 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATT-FKVLAAKVLN 186 (342)
T ss_dssp CTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhH-HHHHHHHHHH
Confidence 2223478999999999887 456789999999999999999999999999999999976532110000 0000 0000
Q ss_pred hccC----CCCCcCCCCCChhhHHHHh---------------------hcCccccccCCCCcEEEEeeCCCCccCcHHHH
Q 004149 670 SYGS----KGKDSFTESPSVEDLTRFH---------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 670 ~~~~----~~~~~~~~~~~~~~~~~~~---------------------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~ 724 (771)
.+.. .................+. ..+....+.++++|+|+++|++|.++|++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~ 266 (342)
T 3hju_A 187 LVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAY 266 (342)
T ss_dssp HHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSSCHHHHH
T ss_pred HhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCCCcccChHHHH
Confidence 0000 0000000000001111110 00112456788999999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHHh
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 770 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~l 770 (771)
.+++.+.. ..++++++++++|.+..... ..+.+..+++||++++
T Consensus 267 ~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (342)
T 3hju_A 267 LLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 312 (342)
T ss_dssp HHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhccc
Confidence 98887753 25899999999998764332 4567788999998875
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=197.71 Aligned_cols=233 Identities=11% Similarity=0.058 Sum_probs=158.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCC-----------CC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLG-----------FG 581 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~-----------~g 581 (771)
..|.++.+.+|.|+++...++.|+||++||++... ..|.. ....+++.||.|+++|.++.+. .|
T Consensus 26 ~~g~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~~~~~~~G~g 103 (280)
T 3i6y_A 26 TLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSD--ENFMQKAGAQRLAAELGIAIVAPDTSPRGEGVADDEGYDLGQG 103 (280)
T ss_dssp TTTEEEEEEEEECGGGGTTCCEEEEEEECCTTCCS--SHHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCCCSSTTSSTT
T ss_pred ccCCeeEEEEEeCCCCCCCCCccEEEEecCCCCCh--hHHhhcccHHHHHhhCCeEEEEeCCcccccccCcccccccccC
Confidence 45788999999998765578899999999977653 23433 3456678899999999875321 11
Q ss_pred hhhhhcCCC-Ccc-ccc-hhhH-HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh
Q 004149 582 EEALQSLPG-KVG-SQD-VNDV-LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 582 ~~~~~~~~~-~~~-~~~-~~D~-~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 657 (771)
.++...... .+. ... ...+ .+.++++.+...+ ++|++|+|||+||++++.++.++|++++++++.+|+++.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~~ 182 (280)
T 3i6y_A 104 AGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNPVNCP 182 (280)
T ss_dssp CCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCCCGGGSH
T ss_pred ccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeCCccccccCc
Confidence 111111100 000 001 1222 2444555455434 5899999999999999999999999999999999987643211
Q ss_pred cCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCC--CcEEEEeeCCCCccCcHH-HHHHHHHHHhCC
Q 004149 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSN-GLQYARALREKG 734 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~g 734 (771)
.. ...+...++. ....+...+|...+.+++ +|+||+||+.|.+++... ++++++.|++.|
T Consensus 183 ~~----~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~~g 245 (280)
T 3i6y_A 183 WG----QKAFTAYLGK-------------DTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNN 245 (280)
T ss_dssp HH----HHHHHHHHCS-------------CGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHHTT
T ss_pred hH----HHHHHHhcCC-------------chHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHHHHcC
Confidence 00 0000011111 112334556666555554 899999999999998755 889999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++++++++|+++|.+. .....+.++++|+.++|+
T Consensus 246 ~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 246 YPLELRSHEGYDHSYY---FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp CCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEeCCCCccHH---HHHHhHHHHHHHHHhhcc
Confidence 9999999999999863 234667889999999885
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=200.18 Aligned_cols=233 Identities=14% Similarity=0.098 Sum_probs=154.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH---HHHHHHCCcEEEEECC--CCCCCCChhh------
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNY--RGSLGFGEEA------ 584 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~---~~~la~~G~~V~~~d~--rG~~~~g~~~------ 584 (771)
..|.++.+.+|.|++.. .++.|+||++||+++.. ..|... .+.++++||.|+++|+ ||.++.|...
T Consensus 25 ~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~~~~~~g~ 101 (282)
T 3fcx_A 25 ELNCKMKFAVYLPPKAE-TGKCPALYWLSGLTCTE--QNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFGT 101 (282)
T ss_dssp TTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC--------CCC
T ss_pred hcCCeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcchHHHHhhcCCeEEEEeccccCccccccccccccccC
Confidence 35778999999998542 36789999999987653 234333 5778899999999999 8766544321
Q ss_pred ----hhcCCC-Cccc--cchhhHH-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh
Q 004149 585 ----LQSLPG-KVGS--QDVNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656 (771)
Q Consensus 585 ----~~~~~~-~~~~--~~~~D~~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~ 656 (771)
...... .+.. ....++. .+++++.+...+|++||+|+|+|+||++|+.++.++|++++++++.+|+++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~ 181 (282)
T 3fcx_A 102 GAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLC 181 (282)
T ss_dssp CCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESCCCCGGGS
T ss_pred CcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCCccCcccC
Confidence 110010 0000 1122233 4445555455578899999999999999999999999999999999998764321
Q ss_pred hcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccc---cCCCCcEEEEeeCCCCccCcHH--HHHHHHHHH
Q 004149 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---SKVKTPTIFLLGAQDLRVPVSN--GLQYARALR 731 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---~~i~~P~Lii~G~~D~~vp~~~--~~~~~~~l~ 731 (771)
... ...+...++. ....+...+|...+ ..+++|+|++||+.|.++|..+ +++++++|+
T Consensus 182 ~~~----~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~~l~ 244 (282)
T 3fcx_A 182 PWG----KKAFSGYLGT-------------DQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAACT 244 (282)
T ss_dssp HHH----HHHHHHHHC----------------CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHHHHHH
T ss_pred chh----HHHHHHhcCC-------------chhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHHHHHH
Confidence 000 0000011111 01112233444333 3447999999999999996655 568999999
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+.|+++++.++|+++|.+.. ...++.+.+.|+.++|+
T Consensus 245 ~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 245 EKKIPVVFRLQEDYDHSYYF---IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HTTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred HcCCceEEEECCCCCcCHHH---HHhhhHHHHHHHHHhhc
Confidence 99999999999999998642 33567788899999875
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=203.02 Aligned_cols=228 Identities=18% Similarity=0.191 Sum_probs=160.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHC-CcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~-G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+| ++.+++|.|++. .++.|+||++|||++.. ....|...+..|+++ ||.|+++||||.+++.
T Consensus 55 ~~~g-~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~~----------- 120 (310)
T 2hm7_A 55 LPGR-TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHK----------- 120 (310)
T ss_dssp ETTE-EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC-----------
T ss_pred cCCC-eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCCC-----------
Confidence 3445 899999999742 46689999999977543 344677788888875 9999999999966532
Q ss_pred cccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhhhhcCCCCCcc
Q 004149 593 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
.....+|+.++++|+.++. .++.++|+|+|||+||.+++.++.++|+ .++++|+.+|..+..... ..+.+
T Consensus 121 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~~~~~---~~~~~ 197 (310)
T 2hm7_A 121 FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAH---PPASI 197 (310)
T ss_dssp TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCCCTTS---CCHHH
T ss_pred CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCCCccc---CCcch
Confidence 1234789999999998864 3577899999999999999999987765 699999999987643100 00000
Q ss_pred hhhhhccCCCCCcCCCCCChhhH----H---------HHhhcCcccc--ccCCCCcEEEEeeCCCCccCcHHHHHHHHHH
Q 004149 666 CYVESYGSKGKDSFTESPSVEDL----T---------RFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~----~---------~~~~~sp~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l 730 (771)
..... ... ...... . .....+|... +..+ +|+||++|++|.++ .++..+++.+
T Consensus 198 ---~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~--~~~~~~~~~l 265 (310)
T 2hm7_A 198 ---EENAE---GYL---LTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR--DVGKLYAEAL 265 (310)
T ss_dssp ---HHTSS---SSS---SCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHH
T ss_pred ---hhcCC---CCC---CCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCC-CCEEEEEecCCCch--HHHHHHHHHH
Confidence 00000 000 000000 0 0012233321 2333 49999999999988 6788999999
Q ss_pred HhCCCCEEEEEeCCCCccCCC----CCChHHHHHHHHHHHHHHhC
Q 004149 731 REKGVETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~wl~~~l~ 771 (771)
++.|++++++++++++|++.. .+...+++..+.+||+++|+
T Consensus 266 ~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 266 NKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998653 22345788999999999875
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=192.93 Aligned_cols=245 Identities=15% Similarity=0.179 Sum_probs=162.7
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|..++++++.|. +++.|+||++||.+.. ...|...+..|+++||.|+++|+||.+.... ......
T Consensus 21 ~~~~~~g~~l~~~~~~~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~---~~~~~~ 91 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGHGQSEG---ERMVVS 91 (303)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTSTTSCS---STTCCS
T ss_pred eEecCCCeEEEEEEeccC----CCCCeEEEEECCCCch--hhHHHHHHHHHHhCCCcEEEeCCCCCCCCCC---CCCCCC
Confidence 345667889999999876 3457999999997665 4478888999999999999999999544321 111111
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-----------CC
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TT 660 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----------~~ 660 (771)
.....++|+.++++++..+ .+.++++|+|||+||.+++.++.++|++++++|+.+|......... ..
T Consensus 92 ~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
T 3pe6_A 92 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNS 169 (303)
T ss_dssp STHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHHH
Confidence 2223378888889888876 3457899999999999999999999999999999999764321100 00
Q ss_pred CCCcch--------------hhhhccCCCCCcCCCCCChhh-HHHHh-hcCccccccCCCCcEEEEeeCCCCccCcHHHH
Q 004149 661 DIPDWC--------------YVESYGSKGKDSFTESPSVED-LTRFH-SKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 661 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~ 724 (771)
..+... ....+........ ....... ...+. .......+.++++|+|+++|++|..++++.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~ 248 (303)
T 3pe6_A 170 VLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICR-AGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAY 248 (303)
T ss_dssp TCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCC-SCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBCHHHHH
T ss_pred hcccccCCccchhhhhcchhHHHHhccCccccc-cchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCChHHHH
Confidence 000000 0000000000000 0000000 00000 00112346788999999999999999999998
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHHh
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 770 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~l 770 (771)
.+++.+.. ..++++++++++|.+..... ..+.+..+++||++++
T Consensus 249 ~~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~ 294 (303)
T 3pe6_A 249 LLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 294 (303)
T ss_dssp HHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccC
Confidence 88887753 25899999999998764332 4567788999999876
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=219.15 Aligned_cols=254 Identities=14% Similarity=0.163 Sum_probs=171.8
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC----CC-CcchH-HH---HHHHHCCcEEEEECCCCCCCCCh
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV----SL-SSYSK-SL---AFLSSVGYSLLIVNYRGSLGFGE 582 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~----~~-~~~~~-~~---~~la~~G~~V~~~d~rG~~~~g~ 582 (771)
.+...||.+|+++++.|++ .++.|+||++||.+... .. ..|.. .. +.|+++||+|+++|+||+++++.
T Consensus 29 ~i~~~DG~~L~~~~~~P~~---~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~RG~g~S~g 105 (615)
T 1mpx_A 29 MIPMRDGVKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEG 105 (615)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCS
T ss_pred EEECCCCCEEEEEEEeCCC---CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEECCCCCCCCCC
Confidence 3456688999999999974 36789999999844321 11 12221 22 78999999999999999888766
Q ss_pred hhhhcCC-----CCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-
Q 004149 583 EALQSLP-----GKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL- 655 (771)
Q Consensus 583 ~~~~~~~-----~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~- 655 (771)
.+....+ ..++..+.+|+.++++||.++ +..+ .||+|+|+||||++++.++..+|+.++++|+.+|+.++..
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~~~~~d~~~~ 184 (615)
T 1mpx_A 106 DYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMG 184 (615)
T ss_dssp CCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTT
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEecCCccccccc
Confidence 5432211 111226789999999999998 6665 5999999999999999999888999999999999988422
Q ss_pred -hh---cCCCCC--cchhhhhccCCC--------C---C-------------cC-C-CCCChh-------hHHHHhhcCc
Q 004149 656 -MV---GTTDIP--DWCYVESYGSKG--------K---D-------------SF-T-ESPSVE-------DLTRFHSKSP 696 (771)
Q Consensus 656 -~~---~~~~~~--~~~~~~~~~~~~--------~---~-------------~~-~-~~~~~~-------~~~~~~~~sp 696 (771)
.. +..... .|.+........ . . .+ . ..+.+. ..+.|...||
T Consensus 185 ~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~w~~~Sp 264 (615)
T 1mpx_A 185 DDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQAL 264 (615)
T ss_dssp SSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCH
T ss_pred cccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCcChhhhhcCh
Confidence 11 000000 010000000000 0 0 00 0 000000 1134557789
Q ss_pred cccccC--CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC---EEEEEeCCCCccCCC------------CCChHH-H
Q 004149 697 ISHISK--VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE---TKVIVFPNDVHGIER------------PQSDFE-S 758 (771)
Q Consensus 697 ~~~~~~--i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~---~~~~~~~~~~H~~~~------------~~~~~~-~ 758 (771)
..++++ |++|+|++||..|.+ ++.++.+++++|+++|++ +++++.|. +|+... .+.... .
T Consensus 265 ~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~ 342 (615)
T 1mpx_A 265 DKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTARQFR 342 (615)
T ss_dssp HHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHH
T ss_pred hhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccccccCccccCcccchhhh
Confidence 989999 999999999999998 888999999999998753 88988887 697511 111112 2
Q ss_pred HHHHHHHHHHHhC
Q 004149 759 FLNIGLWFKKYCK 771 (771)
Q Consensus 759 ~~~i~~wl~~~l~ 771 (771)
.+.+++||++|||
T Consensus 343 ~~~~~~wfd~~Lk 355 (615)
T 1mpx_A 343 HDVLRPFFDQYLV 355 (615)
T ss_dssp HHTHHHHHHHHHS
T ss_pred hhHHHHHHHHHhc
Confidence 5778999999996
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=199.28 Aligned_cols=237 Identities=20% Similarity=0.204 Sum_probs=160.6
Q ss_pred cccCCCc-eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCC
Q 004149 513 LTKGAQK-PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 513 ~~~~~g~-~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
+...+|. ++.+++|.|++ ..++.|+||++|||++... ...+...+..|++ .||.|+++||||.+++.
T Consensus 56 i~~~~g~~~l~~~~~~P~~--~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~~~-------- 125 (323)
T 1lzl_A 56 APGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETT-------- 125 (323)
T ss_dssp ECCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTSC--------
T ss_pred ecCCCCCceeEEEEEecCC--CCCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCCCC--------
Confidence 3444565 79999999974 3457899999999885432 3456677788876 59999999999965531
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhhh----hc
Q 004149 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALM----VG 658 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~----~~ 658 (771)
.....+|+.++++|+.++ ..+|+++|+|+|||+||.+++.++.++++ .++++++.+|+.+.... ..
T Consensus 126 ---~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 202 (323)
T 1lzl_A 126 ---FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTN 202 (323)
T ss_dssp ---TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTTCCSHHHHH
T ss_pred ---CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccCCCcCchhHHH
Confidence 123478999999998874 23677899999999999999999987665 48999999998764321 00
Q ss_pred CCCCCcch------hhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHH
Q 004149 659 TTDIPDWC------YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 659 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l 730 (771)
......+. +...+....... ..........+|... ..+ .+|+||++|+.|.++ .++..++++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~~~--~~~~~~~~~l 273 (323)
T 1lzl_A 203 FVDTPLWHRPNAILSWKYYLGESYSG------PEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDPLR--DEGIEYALRL 273 (323)
T ss_dssp CSSCSSCCHHHHHHHHHHHHCTTCCC------TTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCTTH--HHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCCCCccc------ccccCCCcccCcccC-cccCCCChhheEECCcCCch--HHHHHHHHHH
Confidence 00000000 000000000000 000000111233322 122 279999999999988 6889999999
Q ss_pred HhCCCCEEEEEeCCCCccCCCCC---ChHHHHHHHHHHHHHHhC
Q 004149 731 REKGVETKVIVFPNDVHGIERPQ---SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~i~~wl~~~l~ 771 (771)
++.|++++++++++++|++.... ...++++.+.+||+++++
T Consensus 274 ~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~ 317 (323)
T 1lzl_A 274 LQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 317 (323)
T ss_dssp HHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999865322 245788999999998874
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=203.76 Aligned_cols=280 Identities=13% Similarity=0.129 Sum_probs=171.2
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
|..||||++|+|..+. ....+||++++ .+++.++++... ......+.|||||++|+|.+... .+
T Consensus 41 ~~~SpDg~~l~~~~~~------~g~~~l~~~d~--~~g~~~~lt~~~----~~~~~~~~~spdg~~l~~~~~~~----~l 104 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAF------DGPWNYYLLDL--NTQVATQLTEGR----GDNTFGGFLSPDDDALFYVKDGR----NL 104 (388)
T ss_dssp CCBCTTSCEEEEEECT------TSSCEEEEEET--TTCEEEECCCSS----CBCSSSCEECTTSSEEEEEETTT----EE
T ss_pred ccCCCCCCEEEEEEcC------CCCceEEEEeC--CCCceEEeeeCC----CCCccceEEcCCCCEEEEEeCCC----eE
Confidence 7789999999998752 13457888775 445667776553 11223678999999999987532 34
Q ss_pred EEEe-cCCcceEEEecCC-------------------------------------------------------ccccccc
Q 004149 127 FELW-SQSQLEKEFHVPQ-------------------------------------------------------TVHGSVY 150 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~-------------------------------------------------------~~~g~~~ 150 (771)
+.++ .+++.+.++..+. +....+.
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 4444 3333222221110 0000000
Q ss_pred -CCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004149 151 -ADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 151 -~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
....+..+.||| ||++|+|.+..... .....||++|++++
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~--------------------------------------~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHD--------------------------------------LVDARMWLINEDGT 226 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTT--------------------------------------TSSCSEEEEETTSC
T ss_pred cCCccccccEECCCCCCEEEEEEecCCC--------------------------------------CCcceEEEEeCCCC
Confidence 112345788999 99999998753210 02468999999999
Q ss_pred ceeeccCCCCC--CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC
Q 004149 229 EVQAVKGIPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 306 (771)
Q Consensus 229 ~~~~l~~~~~~--~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 306 (771)
+.+.+ +... ..+..+.|||||+. |+|++...+. ....||++|+ ++
T Consensus 227 ~~~~l--~~~~~~~~~~~~~~spdg~~----l~~~~~~~~~----------~~~~l~~~d~-----------------~~ 273 (388)
T 3pe7_A 227 NMRKV--KTHAEGESCTHEFWVPDGSA----LVYVSYLKGS----------PDRFIYSADP-----------------ET 273 (388)
T ss_dssp CCEES--CCCCTTEEEEEEEECTTSSC----EEEEEEETTC----------CCEEEEEECT-----------------TT
T ss_pred ceEEe--eeCCCCcccccceECCCCCE----EEEEecCCCC----------CcceEEEEec-----------------CC
Confidence 88888 4433 34668899999999 9998854321 1125999998 77
Q ss_pred CcceecCCCCc------cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCC
Q 004149 307 LPVVNLTESIS------SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 380 (771)
Q Consensus 307 ~~~~~lt~~~~------~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (771)
++.+.++...+ ....+.|||||++|+|...+.... ......+|+++|+.+++.++++......
T Consensus 274 g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--~~~~~~~i~~~d~~~~~~~~l~~~~~~~--------- 342 (388)
T 3pe7_A 274 LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY--KIENDPFLYVFNMKNGTQHRVARHDTSW--------- 342 (388)
T ss_dssp CCEEEEEEECCEEEEEECTTSSEEEEEECCC--------------CCCCEEEEEETTTTEEEEEEECCCCC---------
T ss_pred CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc--ccCCCCEEEEEeccCCceEEeccccCcc---------
Confidence 77766654332 133458999999999976542100 0012467999999887654443221100
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 381 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 381 ~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+.+-.......++|||||++|+|.+...+..+||.+++.++.
T Consensus 343 ~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 343 KVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred cccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChhc
Confidence 00000000024578999999999999988888999999986543
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=183.96 Aligned_cols=199 Identities=11% Similarity=0.085 Sum_probs=150.7
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
...+| ++.++++.|++. ..++.|+||++||++... ....|...+..|+++||.|+++|+||.+..... .
T Consensus 16 ~~~~g-~~~~~~~~p~~~-~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~------~ 87 (220)
T 2fuk_A 16 DGPVG-PLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS------F 87 (220)
T ss_dssp EETTE-EEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC------C
T ss_pred eCCCC-eEEEEEEeCCCC-CccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------c
Confidence 34456 899999999731 014589999999964321 222356678889999999999999995543221 1
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.......+|+.++++++.++. +.++++++|||+||.+++.++.++ .++++|+.+|......
T Consensus 88 ~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~--------------- 148 (220)
T 2fuk_A 88 DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD--------------- 148 (220)
T ss_dssp CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC---------------
T ss_pred ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh---------------
Confidence 222345889999999999874 667999999999999999999887 7999999988754211
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
...+. ...|+|+++|++|..+|++.++++++.+. .+++++++++++|.+.
T Consensus 149 --------------------------~~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~H~~~ 198 (220)
T 2fuk_A 149 --------------------------FSDVQ-PPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFFH 198 (220)
T ss_dssp --------------------------CTTCC-CCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTCT
T ss_pred --------------------------hhhcc-cCCcEEEEECCCCcccCHHHHHHHHHHhC---cCCcEEEeCCCCceeh
Confidence 00011 15789999999999999999888887764 3589999999999987
Q ss_pred CCCChHHHHHHHHHHHHHHhC
Q 004149 751 RPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 751 ~~~~~~~~~~~i~~wl~~~l~ 771 (771)
. ...++.+.+.+||+++|+
T Consensus 199 ~--~~~~~~~~i~~~l~~~l~ 217 (220)
T 2fuk_A 199 R--KLIDLRGALQHGVRRWLP 217 (220)
T ss_dssp T--CHHHHHHHHHHHHGGGCS
T ss_pred h--hHHHHHHHHHHHHHHHhh
Confidence 5 355788999999998874
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=196.97 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=150.4
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH
Q 004149 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 602 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~ 602 (771)
+.+|.|.. ..+.|+||++||++.. ...|...+..|+++||.|+++|+||.+.... ...+|+.+
T Consensus 85 ~~~~~p~~---~~~~p~vv~~HG~~~~--~~~~~~~~~~la~~G~~vv~~d~~g~g~s~~------------~~~~d~~~ 147 (306)
T 3vis_A 85 GTIYYPRE---NNTYGAIAISPGYTGT--QSSIAWLGERIASHGFVVIAIDTNTTLDQPD------------SRARQLNA 147 (306)
T ss_dssp EEEEEESS---CSCEEEEEEECCTTCC--HHHHHHHHHHHHTTTEEEEEECCSSTTCCHH------------HHHHHHHH
T ss_pred eEEEeeCC---CCCCCEEEEeCCCcCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCcc------------hHHHHHHH
Confidence 46777863 3378999999997654 3467778889999999999999999544321 23478889
Q ss_pred HHHHHHHc------CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004149 603 AIDHVIDM------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 603 ~i~~l~~~------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
+++++.+. ..++.++++|+|||+||.+++.++.++|+ ++++|+.+|...
T Consensus 148 ~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~------------------------ 202 (306)
T 3vis_A 148 ALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL------------------------ 202 (306)
T ss_dssp HHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS------------------------
T ss_pred HHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC------------------------
Confidence 99999887 56788999999999999999999999887 889998877532
Q ss_pred CcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh
Q 004149 677 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755 (771)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 755 (771)
...+.++++|+|+++|++|..+|++ +++.+++.++..+ +++++++++++|.+.....
T Consensus 203 --------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~~~~- 260 (306)
T 3vis_A 203 --------------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFAPNITN- 260 (306)
T ss_dssp --------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGGSCC-
T ss_pred --------------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccchhhch-
Confidence 1224567799999999999999998 6999999988766 8999999999998765443
Q ss_pred HHHHHHHHHHHHHHhC
Q 004149 756 FESFLNIGLWFKKYCK 771 (771)
Q Consensus 756 ~~~~~~i~~wl~~~l~ 771 (771)
.++.+.+.+||+++++
T Consensus 261 ~~~~~~i~~fl~~~l~ 276 (306)
T 3vis_A 261 KTIGMYSVAWLKRFVD 276 (306)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHcc
Confidence 5888999999999874
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=196.89 Aligned_cols=227 Identities=19% Similarity=0.203 Sum_probs=157.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
++.+++|.|.+ .++.|+||++|||++.. ....|...+..|++ .||.|+++||||.+++. ....+
T Consensus 76 ~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~~-----------~p~~~ 141 (323)
T 3ain_A 76 NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENK-----------FPAAV 141 (323)
T ss_dssp EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHHH
T ss_pred eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCCC-----------CcchH
Confidence 89999999973 45689999999987433 34467778888876 49999999999965531 12357
Q ss_pred hhHHHHHHHHHHcCC-C-CCCeEEEEEcChhHHHHHHHHHhCCCce---eEEEecCCccchhhhh----cCCCCCcc--h
Q 004149 598 NDVLTAIDHVIDMGL-A-NPSKVTVVGGSHGGFLTTHLIGQAPDKF---VAAAARNPLCNLALMV----GTTDIPDW--C 666 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~-~-d~~ri~l~G~S~GG~~a~~~a~~~p~~~---~a~v~~~p~~~~~~~~----~~~~~~~~--~ 666 (771)
+|+.++++|+.++.. . |.++|+|+|+|+||.+++.++.+++++. +++|+.+|+.+..... .......+ .
T Consensus 142 ~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~l~~~ 221 (323)
T 3ain_A 142 VDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFDLITKSLYDNGEGFFLTRE 221 (323)
T ss_dssp HHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCCSCCHHHHHHSSSSSSCHH
T ss_pred HHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCCCCCccHHHhccCCCCCHH
Confidence 899999999987631 1 7889999999999999999998877665 8999999987632110 00000000 0
Q ss_pred hhhhccCCCCCcCCCCCChhhHHHHhhcCcccc-ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 667 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
....+. ..+.... .. ......+|... +..+ +|+||++|+.|.++ .++..+++++++.|+++++++++++
T Consensus 222 ~~~~~~----~~~~~~~--~~-~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~--~~~~~~a~~l~~ag~~~~~~~~~g~ 291 (323)
T 3ain_A 222 HIDWFG----QQYLRSF--AD-LLDFRFSPILADLNDL-PPALIITAEHDPLR--DQGEAYANKLLQSGVQVTSVGFNNV 291 (323)
T ss_dssp HHHHHH----HHHCSSG--GG-GGCTTTCGGGSCCTTC-CCEEEEEETTCTTH--HHHHHHHHHHHHTTCCEEEEEETTC
T ss_pred HHHHHH----HHhCCCC--cc-cCCcccCcccCcccCC-CHHHEEECCCCccH--HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 000000 0000000 00 00012234332 2222 59999999999988 5788999999999999999999999
Q ss_pred CccCCCC----CChHHHHHHHHHHHHHHh
Q 004149 746 VHGIERP----QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~H~~~~~----~~~~~~~~~i~~wl~~~l 770 (771)
+|++... +...++++.+.+||+++|
T Consensus 292 ~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 320 (323)
T 3ain_A 292 IHGFVSFFPFIEQGRDAIGLIGYVLRKVF 320 (323)
T ss_dssp CTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcCHHHHHHHHHHHHHHHHHh
Confidence 9997642 334578899999999876
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=188.53 Aligned_cols=233 Identities=12% Similarity=0.162 Sum_probs=156.1
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~-~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
+...+|.++.+.++.|. ..++.|+||++||+++... ...+. .....|++. |.|+++|+||.+..
T Consensus 8 ~~~~dg~~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~---------- 73 (275)
T 3h04_A 8 VITKDAFALPYTIIKAK---NQPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEV---------- 73 (275)
T ss_dssp EECTTSCEEEEEEECCS---SSSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTS----------
T ss_pred EecCCcEEEEEEEEccC---CCCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCcc----------
Confidence 44567889999999987 4457899999999873222 22343 566677666 99999999985432
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcc-----
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW----- 665 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~----- 665 (771)
......+|+.++++++.++ ++.++++|+|||+||.+++.++.+ +.++++|+.+|..+.............
T Consensus 74 -~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (275)
T 3h04_A 74 -SLDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQ 148 (275)
T ss_dssp -CHHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHHHHHHT
T ss_pred -ccchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchhhcccc
Confidence 1123478999999999887 567899999999999999999998 789999999998765211100000000
Q ss_pred ----hhhhhccCCCCCcCCCCCChhhHHH-------------Hhh-------c-CccccccCCCCcEEEEeeCCCCccCc
Q 004149 666 ----CYVESYGSKGKDSFTESPSVEDLTR-------------FHS-------K-SPISHISKVKTPTIFLLGAQDLRVPV 720 (771)
Q Consensus 666 ----~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-------~-sp~~~~~~i~~P~Lii~G~~D~~vp~ 720 (771)
.....+.. ............... +.. . .....+.+++ |+|+++|++|..+|+
T Consensus 149 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~~D~~~~~ 225 (275)
T 3h04_A 149 SINETMIAQLTS--PTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCNGDYDVPV 225 (275)
T ss_dssp TSCHHHHHTTSC--SSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEETTCSSSCT
T ss_pred cchHHHHhcccC--CCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecCCCCCCCh
Confidence 00000000 000000000000000 000 0 0111235666 999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh--HHHHHHHHHHHHHHhC
Q 004149 721 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 771 (771)
Q Consensus 721 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~wl~~~l~ 771 (771)
+.+..+++.+. +.+++++++++|.+...... .++++.+.+||+++|.
T Consensus 226 ~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 226 EESEHIMNHVP----HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp HHHHHHHTTCS----SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC----CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 99888877654 47899999999998766554 6899999999999873
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=197.78 Aligned_cols=210 Identities=10% Similarity=0.095 Sum_probs=148.1
Q ss_pred CCCCCcEEEEEcCCCCCC---CCCcchHHHHHH----HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHH
Q 004149 533 DCSCDPLIVVLHGGPHSV---SLSSYSKSLAFL----SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 605 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~l----a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~ 605 (771)
+.++.|+||++|||++.. ....|...+..| ++.||.|+++|||++++. .....++|+.++++
T Consensus 37 ~~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~-----------~~~~~~~d~~~~~~ 105 (273)
T 1vkh_A 37 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 105 (273)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCC-----------CCCcHHHHHHHHHH
Confidence 356789999999987543 234677778888 689999999999985432 11235789999999
Q ss_pred HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-----------------CCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 606 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----------------PDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 606 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----------------p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
++.++ ++.++++|+|||+||.+++.++.++ |+.++++|+.+|+.+................
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 183 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 183 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHHHHHH
Confidence 99887 4678999999999999999999885 7889999999998876543221100000000
Q ss_pred hhccCCCCCcCCCCCChhhHHHHhhcCccc--cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004149 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPIS--HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~--~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
..++. ....+. .... ..++.. ....+++|+|+++|++|.++|+++++.+++.+++.+.+++++++++++
T Consensus 184 ~~~~~-~~~~~~--~~~~------~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~g 254 (273)
T 1vkh_A 184 LAFPD-GIQMYE--EEPS------RVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGL 254 (273)
T ss_dssp HHCTT-CGGGCC--CCHH------HHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCS
T ss_pred HHhcc-cccchh--hccc------ccChhhhhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCCCc
Confidence 11100 000000 0000 111110 122367999999999999999999999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHH
Q 004149 747 HGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~wl 766 (771)
|.+.... .++.+.+.+||
T Consensus 255 H~~~~~~--~~~~~~i~~fl 272 (273)
T 1vkh_A 255 HNDVYKN--GKVAKYIFDNI 272 (273)
T ss_dssp GGGGGGC--HHHHHHHHHTC
T ss_pred ccccccC--hHHHHHHHHHc
Confidence 9875444 57777887775
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=200.56 Aligned_cols=228 Identities=18% Similarity=0.222 Sum_probs=161.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
++...+|.++.+++|.|.+ ++.|+||++|||++... ...+...+..|+ +.||.|+++|||+++++
T Consensus 64 ~i~~~~G~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~--------- 130 (317)
T 3qh4_A 64 VVTGEAGRPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEH--------- 130 (317)
T ss_dssp EEECTTSCEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS---------
T ss_pred EecCCCCCeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCC---------
Confidence 4455667789999999973 57899999999875432 345667777777 56999999999986653
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhhhh---cC
Q 004149 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMV---GT 659 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~---~~ 659 (771)
.....++|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.++++ .++++++.+|+++..... ..
T Consensus 131 --~~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 208 (317)
T 3qh4_A 131 --PYPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDRPTASRSEF 208 (317)
T ss_dssp --CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSSCCHHHHHT
T ss_pred --CCchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCCCCcCHHHh
Confidence 2234578999999999885 34788999999999999999999987554 489999999988753100 00
Q ss_pred CCCCcchhhhhccCCCCCcCCCCCChhhHHHHh-------hcCccccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHH
Q 004149 660 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH-------SKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l 730 (771)
...+.+... . .......+. ..+|... ..+ -+|+||++|+.|.+++ ++..++++|
T Consensus 209 ~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~p~~~-~~l~~lpP~li~~G~~D~~~~--~~~~~a~~l 271 (317)
T 3qh4_A 209 RATPAFDGE-A-------------ASLMWRHYLAGQTPSPESVPGRR-GQLAGLPATLITCGEIDPFRD--EVLDYAQRL 271 (317)
T ss_dssp TTCSSSCHH-H-------------HHHHHHHHHTTCCCCTTTCGGGC-SCCTTCCCEEEEEEEESTTHH--HHHHHHHHH
T ss_pred cCCCCcCHH-H-------------HHHHHHHhcCCCCCCcccCCCcc-cccCCCCceeEEecCcCCCch--hHHHHHHHH
Confidence 000000000 0 000000111 1122211 112 2599999999999984 788999999
Q ss_pred HhCCCCEEEEEeCCCCccCCC----CCChHHHHHHHHHHHHHHhC
Q 004149 731 REKGVETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~wl~~~l~ 771 (771)
++.|+++++++|++++|++.. .+...++++.+.+||+++|+
T Consensus 272 ~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 272 LGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998642 23456788999999999874
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=203.58 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=148.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
+...+|.|+. ..++.|+||++|||++... ...+...+..|+++||.|+++|||++++.. .....+|
T Consensus 68 ~~~~~~~p~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~-----------~~~~~~d 134 (303)
T 4e15_A 68 QLVDVFYSEK--TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT-----------LEQLMTQ 134 (303)
T ss_dssp CEEEEEECTT--CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC-----------HHHHHHH
T ss_pred cEEEEEecCC--CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC-----------hhHHHHH
Confidence 4556778863 3567899999999875432 334566788899999999999999965432 1234789
Q ss_pred HHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHhCC-------CceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 600 VLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAP-------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 600 ~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p-------~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+.++++++.+. ...+.++|+|+|||+||++++.++.+.+ +.++++|+.+|+.++..+...... + ....+
T Consensus 135 ~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~~~~~--~-~~~~~ 211 (303)
T 4e15_A 135 FTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESV--N-PKNIL 211 (303)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHTCTTT--S-GGGTT
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhccccc--c-hhhhh
Confidence 99999999873 1246789999999999999999988653 279999999999887654331100 0 00000
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCcc-ccccCC----CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPI-SHISKV----KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~~~i----~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
+ . ..+.+...+|+ ..+..+ ++|+||+||++|..+|+.+++++++++++.|.+++++++++++
T Consensus 212 ~---------~----~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~g~~ 278 (303)
T 4e15_A 212 G---------L----NERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYD 278 (303)
T ss_dssp C---------C----CTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred c---------C----CHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCceEEEEeCCCC
Confidence 0 0 11234455666 556655 8999999999999999999999999999999999999999999
Q ss_pred cc
Q 004149 747 HG 748 (771)
Q Consensus 747 H~ 748 (771)
|.
T Consensus 279 H~ 280 (303)
T 4e15_A 279 HF 280 (303)
T ss_dssp TT
T ss_pred ch
Confidence 95
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=189.80 Aligned_cols=188 Identities=15% Similarity=0.158 Sum_probs=149.3
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
.+.++.|... +.++.|+||++||.+.. ...|...+..|+++||.|+++|+||.+.... ....|+.
T Consensus 40 ~~~l~~p~~~-~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~------------~~~~d~~ 104 (262)
T 1jfr_A 40 GGTIYYPTST-ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRGRQLL 104 (262)
T ss_dssp CEEEEEESCC-TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCHH------------HHHHHHH
T ss_pred ceeEEecCCC-CCCCCCEEEEeCCcCCC--chhHHHHHHHHHhCCCEEEEeCCCCCCCCCc------------hhHHHHH
Confidence 3567777642 24678999999997655 3467778889999999999999999543211 2356888
Q ss_pred HHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 602 TAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 602 ~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
++++++.+ ...++.++++|+|||+||.+++.++.++|+ ++++|+.+|...
T Consensus 105 ~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~------------------------- 158 (262)
T 1jfr_A 105 SALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT------------------------- 158 (262)
T ss_dssp HHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-------------------------
T ss_pred HHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-------------------------
Confidence 89999987 333677899999999999999999999987 899998877421
Q ss_pred cCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
...+.++++|+|+++|++|..++++. ++.+++.+.. +.+++++++++++|.+.... ..
T Consensus 159 -------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~H~~~~~~-~~ 217 (262)
T 1jfr_A 159 -------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPG-SLDKAYLELRGASHFTPNTS-DT 217 (262)
T ss_dssp -------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCT-TSCEEEEEETTCCTTGGGSC-CH
T ss_pred -------------------cccccccCCCEEEEecCccccCCchhhHHHHHHHhhc-CCCceEEEeCCCCcCCcccc-hH
Confidence 12345678999999999999999998 9999999843 56789999999999877544 35
Q ss_pred HHHHHHHHHHHHHhC
Q 004149 757 ESFLNIGLWFKKYCK 771 (771)
Q Consensus 757 ~~~~~i~~wl~~~l~ 771 (771)
++.+.+.+||+++++
T Consensus 218 ~~~~~i~~fl~~~l~ 232 (262)
T 1jfr_A 218 TIAKYSISWLKRFID 232 (262)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 889999999999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-20 Score=215.90 Aligned_cols=314 Identities=11% Similarity=0.039 Sum_probs=194.5
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC-
Q 004149 44 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE- 122 (771)
Q Consensus 44 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~- 122 (771)
...+..||||+.+ |+ + . .+.++++++.++ +..++.... ......+..++|||||++|||.......
T Consensus 19 ~~~~~~spdg~~~-~~-~-~-------dg~i~~~d~~~g--~~~~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 19 DPEAKWISDTEFI-YR-E-Q-------KGTVRLWNVETN--TSTVLIEGK-KIESLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCBSSSSCBC-CC-C-S-------SSCEEEBCGGGC--CCEEEECTT-TTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred ccccEEcCCCcEE-EE-e-C-------CCCEEEEECCCC--cEEEEeccc-cccccccceEEECCCCCEEEEEecCccce
Confidence 3455678899854 33 1 1 236788776443 333333221 0000136789999999999999765422
Q ss_pred ----CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004149 123 ----SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 123 ----~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
...+++.+ .+++.+++...... . .....++|||||++|||++.
T Consensus 86 ~~~~~~~i~~~d~~~~~~~~l~~~~~~-~------~~~~~~~~SPdG~~la~~~~------------------------- 133 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDPQSLDPPEVS-N------AKLQYAGWGPKGQQLIFIFE------------------------- 133 (723)
T ss_dssp SSCCCSEEEEEESSSCCCEECCCTTCC-S------CCCSBCCBCSSTTCEEEEET-------------------------
T ss_pred eecceeeEEEEECCCCceEeccCCccc-c------ccccccEECCCCCEEEEEEC-------------------------
Confidence 24566555 45554444332111 0 11258999999999999742
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CC------------------ccceEEEecCCCCCccEE
Q 004149 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SL------------------SVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~------------------~~~~~~wspDg~~~~~~l 258 (771)
..|+++|+.+++.++++ .. .. ....++|||||+. |
T Consensus 134 --------------------~~i~~~~~~~g~~~~~~--~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~----l 187 (723)
T 1xfd_A 134 --------------------NNIYYCAHVGKQAIRVV--STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----L 187 (723)
T ss_dssp --------------------TEEEEESSSSSCCEEEE--CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----E
T ss_pred --------------------CeEEEEECCCCceEEEe--cCCCCCceECcccceeEEEEeccCcceEEECCCCCE----E
Confidence 47999999999888873 22 11 1257999999999 9
Q ss_pred EEEeecCcceee---------------eeeee----ccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC---
Q 004149 259 VFVGWSSETRKL---------------GIKYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES--- 315 (771)
Q Consensus 259 ~~~~~~~~~~~~---------------g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~--- 315 (771)
+|.+......+. ...+. .+....|+++|+ .+++. +.|+..
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~-----------------~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDP 250 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCG
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC-----------------CCCceeEEeeCCccC
Confidence 998754321100 00000 012337999998 66663 666653
Q ss_pred ---CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004149 316 ---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 316 ---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
...+..+.|||||+.|++...+. .....|+++|+.+++...+..... ..... ....
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~-------~~~~~i~~~d~~~g~~~~~~~~~~----------~~~~~----~~~~ 309 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRA-------QNVSILTLCDATTGVCTKKHEDES----------EAWLH----RQNE 309 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETT-------SCEEEEEEEETTTCCEEEEEEEEC----------SSCCC----CCCC
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCC-------CCeEEEEEEeCCCCcceEEEEecc----------CCEEe----ccCC
Confidence 44578899999999887776653 234679999998876533321110 00000 0013
Q ss_pred CCccccCCCEEEEE-eeeCC----eeEEEEEE-CCCCc---EEEecCCCCCce-eeEEeecCCEEEEEEeCCC-CCCeEE
Q 004149 393 SNPWLSDGCTMLLS-SIWGS----SQVIISVN-VSSGE---LLRITPAESNFS-WSLLTLDGDNIIAVSSSPV-DVPQVK 461 (771)
Q Consensus 393 ~~~~s~dg~~l~~~-~~~~~----~~~l~~~d-~~tg~---~~~l~~~~~~~~-~~~~s~d~~~l~~~~s~~~-~p~~l~ 461 (771)
.+.|||||+.|++. +..++ ..+||.+| ..+++ .+.++....... ...|++||+.|++...... .-..||
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 67899999999887 54555 66899999 67777 777775443332 3579999999998876531 334566
Q ss_pred EEEec
Q 004149 462 YGYFV 466 (771)
Q Consensus 462 ~~~~~ 466 (771)
..++.
T Consensus 390 ~~~~~ 394 (723)
T 1xfd_A 390 SANTV 394 (723)
T ss_dssp EECSS
T ss_pred EEeCC
Confidence 66543
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=193.93 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=156.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCC-----------CC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLG-----------FG 581 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~-----------~g 581 (771)
..|.++.+.+|.|+++.+.+++|+||++||++... ..|.. ....+++.||.|+++|.++.+. .|
T Consensus 24 ~~g~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~~~~~~~g~g 101 (280)
T 3ls2_A 24 STHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTD--ENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNEDSYDFAQG 101 (280)
T ss_dssp TTTEEEEEEEEECTTCBTTBCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCSCTTSSTT
T ss_pred hcCCceEEEEEcCCCCCCCCCcCEEEEeCCCCCCh--hhhhcchhHHHHHhhCCeEEEEeCCcccccccccccccccccC
Confidence 35778999999999776678899999999977653 23332 3456678899999999764221 12
Q ss_pred hhhhhcCCC-Cc-cccc-hhhHH-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh
Q 004149 582 EEALQSLPG-KV-GSQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 582 ~~~~~~~~~-~~-~~~~-~~D~~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 657 (771)
..+...... .+ .... ...+. +.+.++.+...+ .+|++|+|||+||++|+.++.++|++|+++++.+|+++.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~~ 180 (280)
T 3ls2_A 102 AGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCP 180 (280)
T ss_dssp CCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEESCCSCGGGSH
T ss_pred CccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEEEEecCccCcccCc
Confidence 221111110 00 0001 12222 334455444333 4899999999999999999999999999999999987643211
Q ss_pred cCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC----CCcEEEEeeCCCCccCcHH-HHHHHHHHHh
Q 004149 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV----KTPTIFLLGAQDLRVPVSN-GLQYARALRE 732 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i----~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~ 732 (771)
.. ...+...++. ....+...+|...+.++ .+|+|++||+.|.+++... +++++++|++
T Consensus 181 ~~----~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 243 (280)
T 3ls2_A 181 WG----VKAFTGYLGA-------------DKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQ 243 (280)
T ss_dssp HH----HHHHHHHHCS-------------CGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHH
T ss_pred ch----hhHHHhhcCc-------------hHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHH
Confidence 00 0000011110 11233345565555555 4599999999999998744 8899999999
Q ss_pred CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 733 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
.|+++++.++|+++|.+. .....+..+++|+.++|+
T Consensus 244 ~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 244 KDYPLTLEMQTGYDHSYF---FISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred hCCCceEEEeCCCCCchh---hHHHHHHHHHHHHHHHhc
Confidence 999999999999999864 234567889999999885
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=202.25 Aligned_cols=234 Identities=17% Similarity=0.180 Sum_probs=154.5
Q ss_pred ceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCCc---chHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 519 KPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 519 ~~l~~~~~~P~~~-~~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
..+.+.+|.|++. .+.++.|+||++|||++...... |...+..|+ +.||.|+++||||.+++. .
T Consensus 64 ~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~-----------~ 132 (338)
T 2o7r_A 64 HNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHR-----------L 132 (338)
T ss_dssp TTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTC-----------T
T ss_pred CCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCC-----------C
Confidence 4467778888753 23578899999999886543322 667778887 789999999999965431 1
Q ss_pred ccchhhHHHHHHHHHHcC------CCCCCeEEEEEcChhHHHHHHHHHhCCC--------ceeEEEecCCccchhhhhc-
Q 004149 594 SQDVNDVLTAIDHVIDMG------LANPSKVTVVGGSHGGFLTTHLIGQAPD--------KFVAAAARNPLCNLALMVG- 658 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~------~~d~~ri~l~G~S~GG~~a~~~a~~~p~--------~~~a~v~~~p~~~~~~~~~- 658 (771)
...++|+.++++|+.++. .+|.++++|+|||+||.+++.++.++|+ +++++|+.+|+.+......
T Consensus 133 ~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~ 212 (338)
T 2o7r_A 133 PAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGS 212 (338)
T ss_dssp THHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHH
T ss_pred chHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChh
Confidence 235789999999998762 1566899999999999999999998887 8999999999865321100
Q ss_pred ---CCCCCc--chh----hhhccCCCCCcCCCCCChhhHHHHhhcCc---cccccCCCCcEEEEeeCCCCccCcHHHHHH
Q 004149 659 ---TTDIPD--WCY----VESYGSKGKDSFTESPSVEDLTRFHSKSP---ISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726 (771)
Q Consensus 659 ---~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~ 726 (771)
....+. ... ...+....... ..+. ...+...++ +..+..+.+|+|+++|++|.+++ .+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~--~~~~~ 285 (338)
T 2o7r_A 213 ELRLANDSRLPTFVLDLIWELSLPMGADR--DHEY---CNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID--RQMEL 285 (338)
T ss_dssp HHHTTTCSSSCHHHHHHHHHHHSCTTCCT--TSTT---TCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH--HHHHH
T ss_pred hhccCCCcccCHHHHHHHHHHhCCCCCCC--CCcc---cCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH--HHHHH
Confidence 000000 000 00000000000 0000 000000011 11223355699999999999986 56788
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCC--CChHHHHHHHHHHHHHHh
Q 004149 727 ARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~wl~~~l 770 (771)
+++|++.+.+++++++++++|.+... +...++++.+.+||++++
T Consensus 286 ~~~l~~~~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~ 331 (338)
T 2o7r_A 286 AERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSC 331 (338)
T ss_dssp HHHHHHTTCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHCCCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999987532 333678899999998775
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=194.67 Aligned_cols=222 Identities=18% Similarity=0.189 Sum_probs=153.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+|.++ |.|++ .....++||++|||++.... ..+...+..|++ .||.|+++|||+.+++. ..
T Consensus 66 ~g~~~----~~p~~--~~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~-----------~~ 128 (322)
T 3k6k_A 66 GGVPC----IRQAT--DGAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP-----------FP 128 (322)
T ss_dssp TTEEE----EEEEC--TTCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC-----------TT
T ss_pred CCEeE----EecCC--CCCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC-----------Cc
Confidence 45555 45653 22333459999998754332 345566777775 49999999999865431 23
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCc----eeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
..++|+.++++|+.++ .+++++|+|+|+|+||.+++.++.++++. ++++|+.+|+.+...... .+...
T Consensus 129 ~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~-------~~~~~ 200 (322)
T 3k6k_A 129 AAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRW-------SNSNL 200 (322)
T ss_dssp HHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCSH-------HHHHT
T ss_pred hHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCcc-------chhhc
Confidence 4589999999999988 46889999999999999999999887654 899999999887532100 00000
Q ss_pred ccCCCCCcCCCCCChhhH----HH--------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 671 YGSKGKDSFTESPSVEDL----TR--------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~----~~--------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
... ... ...... .. ....+|+.......+|+||++|++|.++ .++..++++|++.|++++
T Consensus 201 ~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~~--~~~~~~~~~l~~~g~~~~ 272 (322)
T 3k6k_A 201 ADR---DFL---AEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEALL--SDSTTLAERAGAAGVSVE 272 (322)
T ss_dssp GGG---CSS---SCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTTH--HHHHHHHHHHHHTTCCEE
T ss_pred cCC---CCc---CCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCccH--HHHHHHHHHHHHCCCCEE
Confidence 000 000 000000 00 0123444433334479999999999885 788999999999999999
Q ss_pred EEEeCCCCccCCCC----CChHHHHHHHHHHHHHHhC
Q 004149 739 VIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 739 ~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l~ 771 (771)
+++|++++|.+... +...++++.+.+||+++|+
T Consensus 273 l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (322)
T 3k6k_A 273 LKIWPDMPHVFQMYGKFVNAADISIKEICHWISARIS 309 (322)
T ss_dssp EEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCccccccccccChHHHHHHHHHHHHHHHHHh
Confidence 99999999987532 2355788999999998874
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=203.28 Aligned_cols=238 Identities=15% Similarity=0.205 Sum_probs=159.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+|..+.++++.+ +.++.|+||++||++.. ...+.... ..+.++||.|+++|+||.+. +..... .....
T Consensus 143 ~~~~l~~~~~~~----~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~g~~vi~~D~~G~G~---s~~~~~--~~~~~ 211 (405)
T 3fnb_A 143 EGELLPGYAIIS----EDKAQDTLIVVGGGDTS--REDLFYMLGYSGWEHDYNVLMVDLPGQGK---NPNQGL--HFEVD 211 (405)
T ss_dssp TTEEEEEEEECC----SSSCCCEEEEECCSSCC--HHHHHHHTHHHHHHTTCEEEEECCTTSTT---GGGGTC--CCCSC
T ss_pred CCeEEEEEEEcC----CCCCCCEEEEECCCCCC--HHHHHHHHHHHHHhCCcEEEEEcCCCCcC---CCCCCC--CCCcc
Confidence 467899988843 34456999999996543 23343333 35668999999999999544 322111 22223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-----CCCCcchhhhh
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDWCYVES 670 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-----~~~~~~~~~~~ 670 (771)
..+|+.++++++..+. ++|+|+|||+||++++.++.++| +++++|+.+|+.++...... ...+.+.. ..
T Consensus 212 ~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~-~~ 285 (405)
T 3fnb_A 212 ARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTALKAPKTIL-KW 285 (405)
T ss_dssp THHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhhhhCcHHHH-HH
Confidence 4788888888886553 78999999999999999999988 89999999999887543211 00111000 00
Q ss_pred ccCCC--------------CCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004149 671 YGSKG--------------KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 671 ~~~~~--------------~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
+.... ...+...........+....+...+.++++|+|+++|++|..+|++++..+++.+++.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~l~~~~~~ 365 (405)
T 3fnb_A 286 GSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGID 365 (405)
T ss_dssp ------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCChHHHHHHHHHhccCCCC
Confidence 00000 0000000011111223333444447889999999999999999999999999999999899
Q ss_pred EEEEEeCCCCccCC--CCCChHHHHHHHHHHHHHHhC
Q 004149 737 TKVIVFPNDVHGIE--RPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 737 ~~~~~~~~~~H~~~--~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++++++++..|... ..+....+.+.+.+||+++|+
T Consensus 366 ~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~ 402 (405)
T 3fnb_A 366 VTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFK 402 (405)
T ss_dssp EEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhC
Confidence 99999977666522 355667888999999999874
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=196.92 Aligned_cols=232 Identities=17% Similarity=0.223 Sum_probs=157.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHC-CcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~-G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+| .+.+++|.|.+ ..+.|+||++||+++.. ....|...+..|+++ ||.|+++||||.+++.
T Consensus 55 ~~~g-~i~~~~~~p~~---~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~~----------- 119 (311)
T 2c7b_A 55 VSGG-SIRARVYFPKK---AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEYK----------- 119 (311)
T ss_dssp ETTE-EEEEEEEESSS---CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTSC-----------
T ss_pred CCCC-cEEEEEEecCC---CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCCC-----------
Confidence 3445 89999999973 34579999999987432 234677788888875 9999999999965531
Q ss_pred cccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhh--------hh
Q 004149 593 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLAL--------MV 657 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~--------~~ 657 (771)
.....+|+.++++++.+.. .+|+++++|+|||+||.+++.++.++|+ .++++|+.+|+.++.. +.
T Consensus 120 ~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~ 199 (311)
T 2c7b_A 120 FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNMTGVPTASLVEFG 199 (311)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCCSSCCCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCCccccccCCccHH
Confidence 1234788999999988752 3677899999999999999999987765 5899999999876310 00
Q ss_pred cCCCCC-cchhhhhccCCCCCcCCCCCChhhHHHHhhcCcccc-ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004149 658 GTTDIP-DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 658 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
...... .......+. ..+..... . ......+|... +..+ +|+|+++|+.|.+++ ++..+++.++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~----~~~~~~~~--~-~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~~~~~l~~~g~ 269 (311)
T 2c7b_A 200 VAETTSLPIELMVWFG----RQYLKRPE--E-AYDFKASPLLADLGGL-PPALVVTAEYDPLRD--EGELYAYKMKASGS 269 (311)
T ss_dssp HCTTCSSCHHHHHHHH----HHHCSSTT--G-GGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHHHHHHHHHTTC
T ss_pred HhccCCCCHHHHHHHH----HHhCCCCc--c-ccCcccCcccccccCC-CcceEEEcCCCCchH--HHHHHHHHHHHCCC
Confidence 000000 000000000 00000000 0 00112233322 2333 499999999999984 66788899999999
Q ss_pred CEEEEEeCCCCccCCC----CCChHHHHHHHHHHHHHHhC
Q 004149 736 ETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~wl~~~l~ 771 (771)
+++++++++++|.+.. .+...++++.+.+||+++++
T Consensus 270 ~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 270 RAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp CEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998762 23346788999999998874
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=212.67 Aligned_cols=254 Identities=14% Similarity=0.175 Sum_probs=172.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCC-----CCC-CcchHH---H-HHHHHCCcEEEEECCCCCCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-----VSL-SSYSKS---L-AFLSSVGYSLLIVNYRGSLGFG 581 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~-----~~~-~~~~~~---~-~~la~~G~~V~~~d~rG~~~~g 581 (771)
.+...||.+|.+++|.|++ .++.|+||++||.+.. ... ..|... . +.|+++||+|+.+|+||+++++
T Consensus 41 ~i~~~DG~~L~~~l~~P~~---~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D~RG~g~S~ 117 (652)
T 2b9v_A 41 MVPMRDGVKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQ 117 (652)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCC
T ss_pred EEECCCCcEEEEEEEecCC---CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEecCcCCCCC
Confidence 3445688999999999984 3678999999973321 111 111111 2 7899999999999999998887
Q ss_pred hhhhhcC--CCCcc---ccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh
Q 004149 582 EEALQSL--PGKVG---SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~~~~--~~~~~---~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 655 (771)
..+.... ...++ ..+.+|+.++++||.++ +..+ .||+|+|+|+||++++.++.++++.++++|+.+|+.++..
T Consensus 118 g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~~~~~d~~~ 196 (652)
T 2b9v_A 118 GDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWM 196 (652)
T ss_dssp SCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTT
T ss_pred CcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEeccccccccc
Confidence 6653221 11122 36789999999999998 7666 6999999999999999999888999999999999888532
Q ss_pred --hh---cCCCCC--cchhhhhcc-CCCC-------CcC---C---------------CCCChh-------hHHHHhhcC
Q 004149 656 --MV---GTTDIP--DWCYVESYG-SKGK-------DSF---T---------------ESPSVE-------DLTRFHSKS 695 (771)
Q Consensus 656 --~~---~~~~~~--~~~~~~~~~-~~~~-------~~~---~---------------~~~~~~-------~~~~~~~~s 695 (771)
.. +..... .|....... .... ..+ . ..+.+. ..+.|...|
T Consensus 197 ~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~yw~~~S 276 (652)
T 2b9v_A 197 GDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFWQGQA 276 (652)
T ss_dssp BSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHHHTTC
T ss_pred ccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCCCChHHhcCC
Confidence 10 100000 010000000 0000 000 0 000000 012345678
Q ss_pred ccccccC--CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC--CCEEEEEeCCCCccCCC-----C------CC--hHHH
Q 004149 696 PISHISK--VKTPTIFLLGAQDLRVPVSNGLQYARALREKG--VETKVIVFPNDVHGIER-----P------QS--DFES 758 (771)
Q Consensus 696 p~~~~~~--i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~-----~------~~--~~~~ 758 (771)
|..++++ |++|+|++||..|.+ +..++.+++++|+.++ +++++++.|. +|+... . .. ....
T Consensus 277 p~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~ 354 (652)
T 2b9v_A 277 LDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYR 354 (652)
T ss_dssp HHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHH
T ss_pred hhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccCCccccccccchhhh
Confidence 8888999 999999999999997 6688999999999998 8899999887 697521 1 11 1223
Q ss_pred HHHHHHHHHHHhC
Q 004149 759 FLNIGLWFKKYCK 771 (771)
Q Consensus 759 ~~~i~~wl~~~l~ 771 (771)
.+.+++||++|||
T Consensus 355 ~~~~~~wfd~~Lk 367 (652)
T 2b9v_A 355 RDVFRPFFDEYLK 367 (652)
T ss_dssp HHTHHHHHHHHHS
T ss_pred hhHHHHHHHHHhC
Confidence 6788999999996
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-20 Score=187.42 Aligned_cols=239 Identities=16% Similarity=0.184 Sum_probs=153.0
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|..+.+..+.+. ....|+||++||++.......+......|+++||.|+++|+||.+..... ..
T Consensus 18 ~~~~g~~l~~~~~~~~----~~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~--------~~ 85 (270)
T 3llc_A 18 QGSDARSIAALVRAPA----QDERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGA--------FR 85 (270)
T ss_dssp SGGGCEEEEEEEECCS----STTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCSC--------GG
T ss_pred eccCcceEEEEeccCC----CCCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCCc--------cc
Confidence 3456788887766654 22469999999977653322234467778889999999999995544221 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh---CC---CceeEEEecCCccchhhhhcCCCCCcch-
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARNPLCNLALMVGTTDIPDWC- 666 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p---~~~~a~v~~~p~~~~~~~~~~~~~~~~~- 666 (771)
...++++.+.+..+++. +..++++|+|||+||.+++.++.+ +| ++++++|+.+|..+..............
T Consensus 86 ~~~~~~~~~d~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~~~~~~~~~~ 163 (270)
T 3llc_A 86 DGTISRWLEEALAVLDH--FKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRER 163 (270)
T ss_dssp GCCHHHHHHHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTTGGGCCHHHH
T ss_pred cccHHHHHHHHHHHHHH--hccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhhhhhhhhhhh
Confidence 22333433333333332 125799999999999999999999 99 8999999999987654422111111000
Q ss_pred --hhhhccCCCCCcCCCCC---ChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 667 --YVESYGSKGKDSFTESP---SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 667 --~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
+...........+...+ ................+.++++|+|+++|++|..+|++.++.+++.+.. .++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~~~~--~~~~~~~ 241 (270)
T 3llc_A 164 AELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPA--DDVVLTL 241 (270)
T ss_dssp HHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHTSCS--SSEEEEE
T ss_pred hhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC--CCeeEEE
Confidence 00000000000011111 1122233334444566788899999999999999999998888877654 3489999
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++++|.+...+...++.+.+.+||++
T Consensus 242 ~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 242 VRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp ETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred eCCCcccccccccHHHHHHHHHHHhcC
Confidence 999999876556566777788888764
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=193.68 Aligned_cols=233 Identities=10% Similarity=0.026 Sum_probs=157.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhh--------
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEA-------- 584 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~~g~~~-------- 584 (771)
..|.++.+.+|.|++.. .++.|+||++||++... ..|.. ....+.+.||.|+++|+||.+......
T Consensus 24 ~~g~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~~~~~~~~g~ 100 (278)
T 3e4d_A 24 TLKSEMTFAVYVPPKAI-HEPCPVVWYLSGLTCTH--ANVMEKGEYRRMASELGLVVVCPDTSPRGNDVPDELTNWQMGK 100 (278)
T ss_dssp TTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCTTCTTSBT
T ss_pred ccCCcceEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEecCCcccCcccccccccccccC
Confidence 35788999999998543 67889999999977653 23433 344566779999999999854321110
Q ss_pred ----hhcCCC-C-ccccchh-hHH-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh
Q 004149 585 ----LQSLPG-K-VGSQDVN-DVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656 (771)
Q Consensus 585 ----~~~~~~-~-~~~~~~~-D~~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~ 656 (771)
...... . ....... .+. +.++++.+...+|+++++|+|||+||++++.++.++|++++++++.+|+++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~ 180 (278)
T 3e4d_A 101 GAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAFAPIVAPSSA 180 (278)
T ss_dssp TBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCSCGGGC
T ss_pred CccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEeCCcccccCC
Confidence 000000 0 0001112 222 3556666665577799999999999999999999999999999999998764321
Q ss_pred hcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC--CCcEEEEeeCCCCccCcHH-HHHHHHHHHhC
Q 004149 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSN-GLQYARALREK 733 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~ 733 (771)
.. ....+...++. ....+...+|...+.++ .+|+||+||+.|.++|... ++.+++.|++.
T Consensus 181 ~~----~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~~ 243 (278)
T 3e4d_A 181 DW----SEPALEKYLGA-------------DRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKGT 243 (278)
T ss_dssp TT----THHHHHHHHCS-------------CGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTTS
T ss_pred cc----chhhHHHhcCC-------------cHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHHc
Confidence 10 00001111111 11223344555555544 4699999999999998432 68899999999
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|+++++.++++++|.+. .....+.+++.|+.++|+
T Consensus 244 g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 244 DIGLTLRMHDRYDHSYY---FISTFMDDHLKWHAERLG 278 (278)
T ss_dssp SCEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred CCCceEEEeCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 99999999999999763 123567889999999885
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-21 Score=187.01 Aligned_cols=188 Identities=14% Similarity=0.122 Sum_probs=132.0
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH---c
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID---M 610 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~---~ 610 (771)
.+..++||++||.+.+ ...|...++.|...|+.|++|+.+|...|+..+..... .....+++..+.++.+++ .
T Consensus 19 ~~a~~~Vv~lHG~G~~--~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 94 (210)
T 4h0c_A 19 QRAKKAVVMLHGRGGT--AADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQ--QNQPALDSALALVGEVVAEIEA 94 (210)
T ss_dssp TTCSEEEEEECCTTCC--HHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGG--GGTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCC--HHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcc--cchHHHHHHHHHHHHHHHHHHH
Confidence 4557899999995543 23454556667778999999999876544333211111 111123333333333322 2
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHH
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 690 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (771)
..++++||+|+|+|+||++++.++.++|++++++++.++.+..... ...
T Consensus 95 ~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~---------------------------~~~---- 143 (210)
T 4h0c_A 95 QGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQEL---------------------------AIG---- 143 (210)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSC---------------------------CGG----
T ss_pred hCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhh---------------------------hhh----
Confidence 3489999999999999999999999999999999988874310000 000
Q ss_pred HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 691 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 691 ~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.......++|+|++||++|++||++.++++++.|++.|.+++++.||+.+|.+. .+.++.+.+||.
T Consensus 144 ------~~~~~~~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~-----~~el~~i~~wL~ 209 (210)
T 4h0c_A 144 ------NYKGDFKQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTIS-----GDEIQLVNNTIL 209 (210)
T ss_dssp ------GCCBCCTTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCC-----HHHHHHHHHTTT
T ss_pred ------hhhhhccCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcC-----HHHHHHHHHHHc
Confidence 000112257999999999999999999999999999999999999999999885 345677888875
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=199.68 Aligned_cols=243 Identities=17% Similarity=0.144 Sum_probs=160.1
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~--~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
+...+|..+.+.+|.|.+. .++.|+||++|||++... .. .|...+..|+++||.|+++||||.+++..
T Consensus 87 ~~~~~g~~l~~~v~~p~~~--~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~~~------- 157 (361)
T 1jkm_A 87 ILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEG------- 157 (361)
T ss_dssp EECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTE-------
T ss_pred eecCCCCeEEEEEEeCCCC--CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCCCC-------
Confidence 3445666899999999742 237899999999874432 23 46667888888999999999999653321
Q ss_pred CCccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHHh-----CCCceeEEEecCCccchhhhhc----C
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNLALMVG----T 659 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~-----~p~~~~a~v~~~p~~~~~~~~~----~ 659 (771)
.........|+.++++|+.++. ..+.++|+|+|||+||.+++.++.. +|++++++|+.+|+.+...... .
T Consensus 158 ~~~~~~~~~D~~~~~~~v~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~~~~~~~~~~~~ 237 (361)
T 1jkm_A 158 HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRL 237 (361)
T ss_dssp ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhhHHhcCCCeEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcccccccccccccc
Confidence 1122345789999999998762 0122399999999999999999987 7878999999999876510000 0
Q ss_pred CCCCcchhhhhcc-C-----CCCCcCCCCCChhhHHHHhhcCcc----ccccCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004149 660 TDIPDWCYVESYG-S-----KGKDSFTESPSVEDLTRFHSKSPI----SHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 660 ~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~sp~----~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~ 729 (771)
.....+....... . .....+..... . ......+|. ..+.++. |+||++|++|.+++ +++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~p~~~~~~~l~~l~-P~Lii~G~~D~~~~--~~~~~~~~ 311 (361)
T 1jkm_A 238 TELPSLVENDGYFIENGGMALLVRAYDPTGE-H--AEDPIAWPYFASEDELRGLP-PFVVAVNELDPLRD--EGIAFARR 311 (361)
T ss_dssp HHCTHHHHTTTSSSCHHHHHHHHHHHSSSST-T--TTCTTTCGGGCCHHHHTTCC-CEEEEEETTCTTHH--HHHHHHHH
T ss_pred ccCcchhhccCcccCHHHHHHHHHHhCCCCC-C--CCCcccCccccChhhHcCCC-ceEEEEcCcCcchh--hHHHHHHH
Confidence 0000000000000 0 00000000000 0 000112333 2345565 99999999999997 88899999
Q ss_pred HHhCCCCEEEEEeCCCCccCC-CC----CCh-HHHHHHHHHHHHHHh
Q 004149 730 LREKGVETKVIVFPNDVHGIE-RP----QSD-FESFLNIGLWFKKYC 770 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~-~~----~~~-~~~~~~i~~wl~~~l 770 (771)
+++.|++++++++++++|.+. .. ... .++++.+.+||+++.
T Consensus 312 l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 312 LARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp HHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999876 21 222 577889999998763
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-20 Score=178.75 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=139.3
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh----------cCCCCccc
Q 004149 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ----------SLPGKVGS 594 (771)
Q Consensus 525 ~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~----------~~~~~~~~ 594 (771)
++.|. ..++.| ||++||.+.. ...|...+..|+ .||.|+++|.++....+..|.. ........
T Consensus 8 ~~~~~---~~~~~p-vv~lHG~g~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~ 80 (209)
T 3og9_A 8 VFKAG---RKDLAP-LLLLHSTGGD--EHQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLD 80 (209)
T ss_dssp EEECC---CTTSCC-EEEECCTTCC--TTTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHH
T ss_pred EEeCC---CCCCCC-EEEEeCCCCC--HHHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHH
Confidence 44554 345678 9999997655 446777777776 7999999996532211222211 00000011
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
...+++.+.++.+.++..+|+++++|+|||+||.+++.++.++|++++++|+.+|......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------- 141 (209)
T 3og9_A 81 EETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF------------------- 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc-------------------
Confidence 2245566666666666557889999999999999999999999999999999988642100
Q ss_pred CCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC
Q 004149 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
.......++|+|++||++|+++|+++++++++.|++.+.++++.+++ ++|.+.
T Consensus 142 ----------------------~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~---- 194 (209)
T 3og9_A 142 ----------------------EQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT---- 194 (209)
T ss_dssp ----------------------CCCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC----
T ss_pred ----------------------cccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC----
Confidence 00123457899999999999999999999999999999999999997 799885
Q ss_pred hHHHHHHHHHHHHHH
Q 004149 755 DFESFLNIGLWFKKY 769 (771)
Q Consensus 755 ~~~~~~~i~~wl~~~ 769 (771)
.+....+.+||+++
T Consensus 195 -~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 195 -QEEVLAAKKWLTET 208 (209)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhh
Confidence 46678999999874
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=211.27 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=169.2
Q ss_pred ccCCCce--EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC----------------------------------------
Q 004149 514 TKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---------------------------------------- 551 (771)
Q Consensus 514 ~~~~g~~--l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---------------------------------------- 551 (771)
...||.+ |.+.+|+|++ .++.|+||..||-+....
T Consensus 179 ~~~DG~~d~L~a~l~~P~~---~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 255 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC---CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccccc
Confidence 5678898 9999999984 468999998887322100
Q ss_pred ------CCcc-----hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC---------
Q 004149 552 ------LSSY-----SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--------- 611 (771)
Q Consensus 552 ------~~~~-----~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--------- 611 (771)
...| ......|+++||+|+++|+||.++++.. ....+..+.+|+.++++||..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~-----~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 256 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSC-----CCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCc-----CCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 0111 1345789999999999999997665432 12233456899999999998431
Q ss_pred -----CCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC-------CCCcchh----hhhccCCC
Q 004149 612 -----LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------DIPDWCY----VESYGSKG 675 (771)
Q Consensus 612 -----~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-------~~~~~~~----~~~~~~~~ 675 (771)
..+.+||+|+|+||||++++.+|..+|+.++++|+.+|+.++....... ..+.+.. ...+....
T Consensus 331 ~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~~ 410 (763)
T 1lns_A 331 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 410 (763)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGG
T ss_pred ccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhhc
Confidence 1345799999999999999999999999999999999998765433211 0111100 00000000
Q ss_pred C---------------CcC-----CCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004149 676 K---------------DSF-----TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 676 ~---------------~~~-----~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
. ..+ ...+. ....+...++...+++|++|+|++||..|.++|+.++.++++++++ +.
T Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~-~~ 487 (763)
T 1lns_A 411 DGADFLKGNAEYEKRLAEMTAALDRKSGD--YNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GH 487 (763)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCTTTCC--CCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TC
T ss_pred CcchhhhHHHHHHHHHHHHHhhhhhccCc--hhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc-CC
Confidence 0 000 00000 0122345677788999999999999999999999999999999987 66
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+.++++ ++++|.........++.+.+.+||++|||
T Consensus 488 ~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lk 522 (763)
T 1lns_A 488 AKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKLL 522 (763)
T ss_dssp CEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHHT
T ss_pred CeEEEE-eCCcccCccccchHHHHHHHHHHHHHHhc
Confidence 676655 56789865332233568899999999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-20 Score=214.37 Aligned_cols=312 Identities=12% Similarity=0.087 Sum_probs=188.9
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC----
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 121 (771)
.+.+++||+ +++.. ..+.++++++.+ ++.++++... ......+..++|||||++|||.+...+
T Consensus 20 ~~~~s~dg~-~~~~~---------~d~~i~~~~~~~--g~~~~~~~~~-~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQE-YLHQS---------ADNNIVLYNIET--GQSYTILSNR-TMKSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSE-EEEEC---------TTSCEEEEESSS--CCEEEEECHH-HHHTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccEECCCCe-EEEEc---------CCCCEEEEEcCC--CcEEEEEccc-cccccceeeEEECCCCCeEEEEecCceeEEe
Confidence 445578994 44432 124788877643 3455554332 000012678999999999999876321
Q ss_pred -CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004149 122 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 122 -~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
....+++.+ .+++......+.... ..++|||||++|||+.
T Consensus 87 s~~~~i~~~d~~~g~~~~~~~l~~~~----------~~~~~SPDG~~la~~~---------------------------- 128 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRGNELPRPI----------QYLCWSPVGSKLAYVY---------------------------- 128 (719)
T ss_dssp CEEEEEEEEETTTTEECCSSCCCSSB----------CCEEECSSTTCEEEEE----------------------------
T ss_pred ecceEEEEEECCCCccccceecCccc----------ccceECCCCCEEEEEE----------------------------
Confidence 123455555 444430001112222 5899999999999973
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC-------------------ccceEEEecCCCCCccEEEE
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-------------------SVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~-------------------~~~~~~wspDg~~~~~~l~~ 260 (771)
...|++||+.+++.++++ .... ....++|||||+. |+|
T Consensus 129 -----------------~~~i~~~~~~~g~~~~l~--~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~----la~ 185 (719)
T 1z68_A 129 -----------------QNNIYLKQRPGDPPFQIT--FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF----LAY 185 (719)
T ss_dssp -----------------TTEEEEESSTTSCCEECC--CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE----EEE
T ss_pred -----------------CCeEEEEeCCCCCcEEEe--cCCCcCCeEcccccceeeeecccCcccEEECCCCCE----EEE
Confidence 258999999999888873 2211 1147999999999 999
Q ss_pred EeecCccee-e--------------eeeee----ccCCceeEEEecccccchhhhhhhhcCCCCCCcce---ec------
Q 004149 261 VGWSSETRK-L--------------GIKYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NL------ 312 (771)
Q Consensus 261 ~~~~~~~~~-~--------------g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~l------ 312 (771)
.+......+ . ...|. .+....|+++|+ ++++.. ++
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~-----------------~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT-----------------TYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES-----------------SCHHHHCCEECCCCHHH
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC-----------------CCCCccceeEccCCccC
Confidence 885432100 0 00000 022347999998 555432 33
Q ss_pred CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee----cCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004149 313 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID----WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 313 t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
..+...+.+++|||||+ ++|..... + ....+|+++| +.+++.+.+...... ..+... ..
T Consensus 249 ~~~~~~~~~~~~SpD~~-~~~~~~~~----~--~~~~~l~~~d~~~~~~~g~~~~~~~~~~~-------~~~~~~---~~ 311 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDER-VCLQWLKR----V--QNVSVLSICDFREDWQTWDCPKTQEHIEE-------SRTGWA---GG 311 (719)
T ss_dssp HTSCEEEEEEEESSSSE-EEEEEEES----S--TTEEEEEEEEECSSSSSEECCGGGEEEEE-------CSSSCS---SS
T ss_pred CCCcceEEEeEEeCCCe-EEEEEecc----c--cCeEEEEEEcccCCCCCCceEEEEecccc-------cCCceE---cc
Confidence 23455678999999976 55553322 1 2246799999 777666554320000 000000 00
Q ss_pred CCCCCCccccCCCEEEEE-eeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC---CCCCCeEEEEE
Q 004149 389 SSILSNPWLSDGCTMLLS-SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS---PVDVPQVKYGY 464 (771)
Q Consensus 389 ~~~~~~~~s~dg~~l~~~-~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~---~~~p~~l~~~~ 464 (771)
.....+.|||||+.|++. +...+..+||.+++.+++.+.++.....+....++ +++.|+++... ......||..+
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 001267899999988875 44567788999999999988888765544455666 99999988864 12345677777
Q ss_pred ec
Q 004149 465 FV 466 (771)
Q Consensus 465 ~~ 466 (771)
+.
T Consensus 391 ~~ 392 (719)
T 1z68_A 391 IG 392 (719)
T ss_dssp CS
T ss_pred CC
Confidence 63
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=183.64 Aligned_cols=211 Identities=15% Similarity=0.068 Sum_probs=154.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC---------
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--------- 591 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~--------- 591 (771)
+..+++.|.+ +.|+||++||.+.. ...|...+..|+++||.|+++|+||.+...... ....
T Consensus 13 ~~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~---~~~~~~~~~~~~~ 82 (238)
T 1ufo_A 13 LSVLARIPEA-----PKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPP---PSSKSPRYVEEVY 82 (238)
T ss_dssp EEEEEEEESS-----CCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCC---CCTTSTTHHHHHH
T ss_pred EEEEEEecCC-----CccEEEEECCCccc--chHHHHHHHHHHhCCCEEEEecCCCCccCCCCC---CcccccchhhhHH
Confidence 4455777762 67999999997654 335556667788899999999999954332111 0000
Q ss_pred -ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 592 -VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 592 -~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
......+|+.++++++.+.+. ++++++|||+||.+++.++.++|+.++++++.++...... ....
T Consensus 83 ~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~---- 148 (238)
T 1ufo_A 83 RVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL-------PQGQ---- 148 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCC-------CTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchh-------hhhh----
Confidence 011236788888888877642 7899999999999999999999998999888776532110 0000
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHH-hCCC-CEEEEEeCCCCc
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR-EKGV-ETKVIVFPNDVH 747 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~-~~g~-~~~~~~~~~~~H 747 (771)
... ......+...++...+.++ ++|+|+++|++|..+|++.++++++.+. +.+. +++++++++++|
T Consensus 149 ---------~~~--~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 217 (238)
T 1ufo_A 149 ---------VVE--DPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGH 217 (238)
T ss_dssp ---------CCC--CHHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCS
T ss_pred ---------ccC--CcccchhhcCChhhhhhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCc
Confidence 001 1224455566677777888 8999999999999999999999999999 7777 899999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhC
Q 004149 748 GIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
.+. .+..+.+.+||.++|+
T Consensus 218 ~~~-----~~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 218 TLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp SCC-----HHHHHHHHHHHHHHHH
T ss_pred ccH-----HHHHHHHHHHHHHHHh
Confidence 875 3567889999998863
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=182.87 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=143.1
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC----------------CChhhhhcC
Q 004149 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG----------------FGEEALQSL 588 (771)
Q Consensus 525 ~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~----------------~g~~~~~~~ 588 (771)
++.|+ ..++.|+||++||.+.. ...|...+..|++.||.|+++|+++.+. +.... ..
T Consensus 14 ~~~p~---~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~--~~ 86 (232)
T 1fj2_A 14 AIVPA---ARKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDS--QE 86 (232)
T ss_dssp EEECC---SSCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTC--CB
T ss_pred cccCC---CCCCCceEEEEecCCCc--cchHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCccc--cc
Confidence 45565 34678999999997654 3356667777777899999995443100 10000 00
Q ss_pred CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 589 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
.........+++.++++++.+ ..++.++++|+|||+||.+++.++.++|++++++|+.+|........
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~----------- 154 (232)
T 1fj2_A 87 DESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF----------- 154 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS-----------
T ss_pred ccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCccc-----------
Confidence 000011124566666666665 44777999999999999999999999999999999999975432110
Q ss_pred hhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC--EEEEEeCCCC
Q 004149 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFPNDV 746 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~~~~~ 746 (771)
. .....+.++++|+|+++|++|..+|++.++++++.+++.+.+ ++++++++++
T Consensus 155 ---~----------------------~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 209 (232)
T 1fj2_A 155 ---P----------------------QGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMM 209 (232)
T ss_dssp ---C----------------------SSCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCC
T ss_pred ---c----------------------ccccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence 0 001234567899999999999999999999999999988854 9999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 747 HGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|.+. .+.++.+.+||+++|+
T Consensus 210 H~~~-----~~~~~~i~~~l~~~l~ 229 (232)
T 1fj2_A 210 HSSC-----QQEMMDVKQFIDKLLP 229 (232)
T ss_dssp SSCC-----HHHHHHHHHHHHHHSC
T ss_pred cccC-----HHHHHHHHHHHHHhcC
Confidence 9883 3566899999999875
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=186.06 Aligned_cols=220 Identities=17% Similarity=0.128 Sum_probs=150.0
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
++.|+||++||.+.. ...|...+..|+++||.|+++|+||.+.+........ . ......+|+.++++++..+
T Consensus 20 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~-~-~~~~~~~d~~~~i~~l~~~---- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGS--PNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTK-G-NPDIWWAESSAAVAHMTAK---- 91 (251)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHH-C-CHHHHHHHHHHHHHHHHTT----
T ss_pred CCCceEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCc-c-cHHHHHHHHHHHHHHHHHh----
Confidence 356889999997665 4477888999999999999999999554421110000 0 1112257888888888765
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhh-------
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED------- 687 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 687 (771)
.++++|+|||+||.+++.++.++|++++++++.+|............ ..+...+. ......+....
T Consensus 92 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~ 164 (251)
T 3dkr_A 92 YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGF---LKYAEYMN----RLAGKSDESTQILAYLPG 164 (251)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHH---HHHHHHHH----HHHTCCCCHHHHHHHHHH
T ss_pred cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHH---HHHHHHHH----hhcccCcchhhHHhhhHH
Confidence 57999999999999999999999999999999998765211000000 00000000 00000000000
Q ss_pred -HHHHh--hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004149 688 -LTRFH--SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 688 -~~~~~--~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
...+. .......+.++++|+|+++|++|..+|++.+..+++.+... .+++++++++++|.+.......++.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~ 243 (251)
T 3dkr_A 165 QLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIA 243 (251)
T ss_dssp HHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHHHHHHH
Confidence 00011 01123456788999999999999999999999998888764 568999999999998766667789999999
Q ss_pred HHHHHh
Q 004149 765 WFKKYC 770 (771)
Q Consensus 765 wl~~~l 770 (771)
||++..
T Consensus 244 fl~~~~ 249 (251)
T 3dkr_A 244 FMQQEN 249 (251)
T ss_dssp HHHTTC
T ss_pred HHHhhc
Confidence 998753
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=189.61 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=146.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~-~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+..+...+|.|.+ ++.|+||++|||++. .....|...+..|+++||.|+++|+||++++ .....
T Consensus 48 ~~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~-----------~~~~~ 112 (262)
T 2pbl_A 48 GDRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEV-----------RISEI 112 (262)
T ss_dssp STTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTS-----------CHHHH
T ss_pred CCCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCC-----------ChHHH
Confidence 3445566888863 568999999997643 2344677778889999999999999986432 12234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC------CCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.+|+.++++++..+.. ++++|+|||+||.+++.++.++ |++++++|+.+|+.++....... ....
T Consensus 113 ~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~~------~~~~ 183 (262)
T 2pbl_A 113 TQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------MNEK 183 (262)
T ss_dssp HHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------THHH
T ss_pred HHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhhh------hhhh
Confidence 7899999999988742 7899999999999999999887 88999999999987654321110 0000
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
+. .....+...+|...+.++++|+|+++|++|..+++++++.+++.+. ++++++++++|...
T Consensus 184 ~~-------------~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~~~ 245 (262)
T 2pbl_A 184 FK-------------MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHFNV 245 (262)
T ss_dssp HC-------------CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTTTT
T ss_pred hC-------------CCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeCCCCcchH
Confidence 00 1123445667777788899999999999999999999999999886 78999999999876
Q ss_pred C
Q 004149 751 R 751 (771)
Q Consensus 751 ~ 751 (771)
.
T Consensus 246 ~ 246 (262)
T 2pbl_A 246 I 246 (262)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=179.13 Aligned_cols=263 Identities=15% Similarity=0.142 Sum_probs=180.7
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CcceEEEecCCccc
Q 004149 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQTVH 146 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 146 (771)
...+.|+++++. .++..++.... ..+..++|||||++|++..+. .++.++ .+ ++..++......
T Consensus 19 ~~~~~i~~~d~~--~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~-- 84 (297)
T 2ojh_A 19 SMRSSIEIFNIR--TRKMRVVWQTP-----ELFEAPNWSPDGKYLLLNSEG-----LLYRLSLAGDPSPEKVDTGFAT-- 84 (297)
T ss_dssp CCCEEEEEEETT--TTEEEEEEEES-----SCCEEEEECTTSSEEEEEETT-----EEEEEESSSCCSCEECCCTTCC--
T ss_pred CcceeEEEEeCC--CCceeeeccCC-----cceEeeEECCCCCEEEEEcCC-----eEEEEeCCCCCCceEecccccc--
Confidence 345677777653 23444444332 568899999999999987532 466665 44 444444322210
Q ss_pred ccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004149 147 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 147 g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
..+..+.|||||++|++...... ....||.+++.
T Consensus 85 ------~~~~~~~~spdg~~l~~~~~~~~----------------------------------------~~~~l~~~~~~ 118 (297)
T 2ojh_A 85 ------ICNNDHGISPDGALYAISDKVEF----------------------------------------GKSAIYLLPST 118 (297)
T ss_dssp ------CBCSCCEECTTSSEEEEEECTTT----------------------------------------SSCEEEEEETT
T ss_pred ------ccccceEECCCCCEEEEEEeCCC----------------------------------------CcceEEEEECC
Confidence 11258999999999999864321 24789999999
Q ss_pred CCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC
Q 004149 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 306 (771)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 306 (771)
+++.+.+ .... .+..+.|||||+. |+|++... ....||.+++ .+
T Consensus 119 ~~~~~~~--~~~~-~~~~~~~spdg~~----l~~~~~~~------------~~~~l~~~~~-----------------~~ 162 (297)
T 2ojh_A 119 GGTPRLM--TKNL-PSYWHGWSPDGKS----FTYCGIRD------------QVFDIYSMDI-----------------DS 162 (297)
T ss_dssp CCCCEEC--CSSS-SEEEEEECTTSSE----EEEEEEET------------TEEEEEEEET-----------------TT
T ss_pred CCceEEe--ecCC-CccceEECCCCCE----EEEEECCC------------CceEEEEEEC-----------------CC
Confidence 9888777 3333 3677899999998 99876322 2237888887 67
Q ss_pred CcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccc
Q 004149 307 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 307 ~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
+..+.+......+..+.|||||+.|++.+..+ ...+||.++..++....+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~----------------- 217 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT--------GQMQIWRVRVDGSSVERITDSAY----------------- 217 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTT--------SSCEEEEEETTSSCEEECCCCSE-----------------
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCC--------CCccEEEECCCCCCcEEEecCCc-----------------
Confidence 77788887777788999999999999987643 14568888766554433322111
Q ss_pred ccCCCCCCccccCCCEEEEEeeeC--------CeeEEEEEECCCCcEEEecC---CCCCceeeEEeecCCEEEEEEeCCC
Q 004149 387 YSSSILSNPWLSDGCTMLLSSIWG--------SSQVIISVNVSSGELLRITP---AESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 387 ~~~~~~~~~~s~dg~~l~~~~~~~--------~~~~l~~~d~~tg~~~~l~~---~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
....+.|+|||+.|++.+... ....|+.+|+.+++.+.+.. ....+....|+++++.|++......
T Consensus 218 ---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 218 ---GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp ---EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred ---ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 123568999999998887654 33679999999988776653 2334555789999999998876553
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=177.51 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=142.0
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH--CCcEEEEECCCCC-----CCCC-hhhhhc-CC---CCc
Q 004149 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGS-----LGFG-EEALQS-LP---GKV 592 (771)
Q Consensus 525 ~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~V~~~d~rG~-----~~~g-~~~~~~-~~---~~~ 592 (771)
++.|+ ..++.|+||++||.+.. ...|...+..|++ +||.|+++|++|. .+++ ..|... .. ...
T Consensus 5 ~~~~~---~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~ 79 (218)
T 1auo_A 5 LILQP---AKPADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSI 79 (218)
T ss_dssp EEECC---SSCCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEE
T ss_pred eecCC---CCCCCcEEEEEecCCCC--hhhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCccccc
Confidence 34454 34678999999997755 4467788889988 9999999998741 0100 000000 00 001
Q ss_pred cccc----hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHH-hCCCceeEEEecCCccchhhhhcCCCCCcchh
Q 004149 593 GSQD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667 (771)
Q Consensus 593 ~~~~----~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~ 667 (771)
.... .+++...++++.+ ..++.++++++|||+||.+++.++. ++|++++++|+.+|.... ...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~------~~~~---- 148 (218)
T 1auo_A 80 SLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPT------FGDE---- 148 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTT------CCTT----
T ss_pred chHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCC------chhh----
Confidence 1112 3445555555554 3467889999999999999999999 999999999999997643 0000
Q ss_pred hhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004149 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
. ......+++|+|+++|++|..+|++.++++++.+++.+.++++++++ ++|
T Consensus 149 -----~-----------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH 199 (218)
T 1auo_A 149 -----L-----------------------ELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGH 199 (218)
T ss_dssp -----C-----------------------CCCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSS
T ss_pred -----h-----------------------hhhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCC
Confidence 0 00113457899999999999999999999999999988899999999 999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhC
Q 004149 748 GIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
.+. .+..+.+.+||.++|+
T Consensus 200 ~~~-----~~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 200 EVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp SCC-----HHHHHHHHHHHHHHHC
T ss_pred ccC-----HHHHHHHHHHHHHHhC
Confidence 875 3567899999999875
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=173.68 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=147.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH--HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+|.++++++|.|.+ +.|+||++||++.. ...|.. .+..|+++||.|+++|+||.+ .++..... .
T Consensus 10 ~~~g~~l~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g~g---~s~~~~~~--~ 77 (207)
T 3bdi_A 10 DVNGTRVFQRKMVTDS-----NRRSIALFHGYSFT--SMDWDKADLFNNYSKIGYNVYAPDYPGFG---RSASSEKY--G 77 (207)
T ss_dssp EETTEEEEEEEECCTT-----CCEEEEEECCTTCC--GGGGGGGTHHHHHHTTTEEEEEECCTTST---TSCCCTTT--C
T ss_pred eeCCcEEEEEEEeccC-----CCCeEEEECCCCCC--ccccchHHHHHHHHhCCCeEEEEcCCccc---ccCcccCC--C
Confidence 3468899999999863 56899999997765 346777 889999999999999999944 33110001 1
Q ss_pred ccc-chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 593 GSQ-DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 593 ~~~-~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
... ..+++.+.+..+.+. .+.++++++|||+||.+++.++.++|++++++++.+|..... +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~----------~------ 139 (207)
T 3bdi_A 78 IDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVES----------L------ 139 (207)
T ss_dssp CTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGG----------G------
T ss_pred CCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccc----------h------
Confidence 122 567777777777766 345799999999999999999999999999999998862100 0
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
...+.++++|+|+++|++|..++++.++.+.+.+. +++++++++++|.+..
T Consensus 140 -------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~ 190 (207)
T 3bdi_A 140 -------------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIIS----GSRLEIVEGSGHPVYI 190 (207)
T ss_dssp -------------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHST----TCEEEEETTCCSCHHH
T ss_pred -------------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhcC----CceEEEeCCCCCCccc
Confidence 12345678999999999999999998888887763 4789999999998653
Q ss_pred CCChHHHHHHHHHHHHH
Q 004149 752 PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 752 ~~~~~~~~~~i~~wl~~ 768 (771)
. ...++.+.+.+||++
T Consensus 191 ~-~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 191 E-KPEEFVRITVDFLRN 206 (207)
T ss_dssp H-SHHHHHHHHHHHHHT
T ss_pred c-CHHHHHHHHHHHHhh
Confidence 2 345677888888864
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-19 Score=174.51 Aligned_cols=184 Identities=19% Similarity=0.245 Sum_probs=139.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH--CCcEEEEECCCCCC----------------CCChhhhhcCCCCccc
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSL----------------GFGEEALQSLPGKVGS 594 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~V~~~d~rG~~----------------~~g~~~~~~~~~~~~~ 594 (771)
+.++.|+||++||++.. ...|...+..|++ +||.|+++|++|.+ ++|.+ .....
T Consensus 20 ~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~------~~~~~ 91 (226)
T 3cn9_A 20 APNADACIIWLHGLGAD--RTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA------RAIDE 91 (226)
T ss_dssp CTTCCEEEEEECCTTCC--GGGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST------TCBCH
T ss_pred CCCCCCEEEEEecCCCC--hHHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc------ccccc
Confidence 55678999999997755 4467788888988 99999999988521 12211 01111
Q ss_pred cch----hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHH-hCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 595 QDV----NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 595 ~~~----~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
..+ +++...++.+.+ ..++.++++|+|||+||.+++.++. ++|++++++|+.+|........
T Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------ 158 (226)
T 3cn9_A 92 DQLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------ 158 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC------------
T ss_pred hhHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh------------
Confidence 223 344444444443 2467789999999999999999999 9999999999999976432110
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.. ....+++|+|+++|++|..+|++.++++++.+.+.+.++++++++ ++|.+
T Consensus 159 -----------------------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~ 210 (226)
T 3cn9_A 159 -----------------------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEV 210 (226)
T ss_dssp -----------------------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSC
T ss_pred -----------------------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCc
Confidence 00 013567899999999999999999999999999988899999999 99987
Q ss_pred CCCCChHHHHHHHHHHHHHHh
Q 004149 750 ERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl~~~l 770 (771)
. .+..+.+.+||+++|
T Consensus 211 ~-----~~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 211 S-----LEEIHDIGAWLRKRL 226 (226)
T ss_dssp C-----HHHHHHHHHHHHHHC
T ss_pred c-----hhhHHHHHHHHHhhC
Confidence 4 456788999999875
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=180.91 Aligned_cols=219 Identities=17% Similarity=0.218 Sum_probs=149.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
+.|+||++||.+.. ...|...+..|+++||.|+++|+||.+...... .. ......++|+.++++++..+ .
T Consensus 39 ~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~---~~-~~~~~~~~d~~~~i~~l~~~----~ 108 (270)
T 3rm3_A 39 GPVGVLLVHGFTGT--PHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDM---ER-TTFHDWVASVEEGYGWLKQR----C 108 (270)
T ss_dssp SSEEEEEECCTTCC--GGGTHHHHHHHHHTTCEEEECCCTTCSSCHHHH---HT-CCHHHHHHHHHHHHHHHHTT----C
T ss_pred CCeEEEEECCCCCC--hhHHHHHHHHHHHCCCEEEEeCCCCCCCCcccc---cc-CCHHHHHHHHHHHHHHHHhh----C
Confidence 45999999997655 346788899999999999999999955443221 11 11222367888888888765 5
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCC----CCcchhhhhccCCCCC------cCCCCCCh
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----IPDWCYVESYGSKGKD------SFTESPSV 685 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~ 685 (771)
++++|+|||+||.+++.++.++|+ ++++|+.+|............ ...+. ..+...... .+...+ .
T Consensus 109 ~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~ 184 (270)
T 3rm3_A 109 QTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYL--DSIGSDLKNPDVKELAYEKTP-T 184 (270)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEE--ECCCCCCSCTTCCCCCCSEEE-H
T ss_pred CcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHH--HHhCccccccchHhhcccccC-h
Confidence 799999999999999999999999 999999999776543221110 01110 000000000 000000 0
Q ss_pred hhHHHHh--hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004149 686 EDLTRFH--SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 686 ~~~~~~~--~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
.....+. .......+.++++|+|+++|++|..+|++.+..+++.+.. .+++++++++++|.+.......++.+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~ 262 (270)
T 3rm3_A 185 ASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISS--TEKEIVRLRNSYHVATLDYDQPMIIERSL 262 (270)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcCC--CcceEEEeCCCCcccccCccHHHHHHHHH
Confidence 1111110 0112245678899999999999999999999998888754 35799999999999876655578999999
Q ss_pred HHHHHHh
Q 004149 764 LWFKKYC 770 (771)
Q Consensus 764 ~wl~~~l 770 (771)
+||+++.
T Consensus 263 ~fl~~~~ 269 (270)
T 3rm3_A 263 EFFAKHA 269 (270)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999875
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=183.85 Aligned_cols=198 Identities=19% Similarity=0.207 Sum_probs=141.7
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCC---CCCCChhhhhc--CCCCccc--
Q 004149 524 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRG---SLGFGEEALQS--LPGKVGS-- 594 (771)
Q Consensus 524 ~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~V~~~d~rG---~~~~g~~~~~~--~~~~~~~-- 594 (771)
+..+|. .+.++.|+||++||.+.+ ...|...++.|+.+ ++.+++|+-+. ..+.|..|... .......
T Consensus 55 y~~~p~--~~~~~~plVI~LHG~G~~--~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~ 130 (285)
T 4fhz_A 55 FGRRGA--APGEATSLVVFLHGYGAD--GADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAA 130 (285)
T ss_dssp EEEEES--CTTCCSEEEEEECCTTBC--HHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHH
T ss_pred eecCCC--CCCCCCcEEEEEcCCCCC--HHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchh
Confidence 344554 367788999999995543 23454556666543 88999987431 12244444210 0000001
Q ss_pred -----cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 595 -----QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 595 -----~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
...+++.+.++.+.++..+|++||+|+|+|+||.+++.++.++|+.++++|..++....
T Consensus 131 ~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~---------------- 194 (285)
T 4fhz_A 131 AEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA---------------- 194 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC----------------
Confidence 11335556666666666699999999999999999999999999999999988774310
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
..... .....++|+|++||+.|++||++.++++++.|++.|.++++++|++.+|.+
T Consensus 195 ---------------~~~~~---------~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i 250 (285)
T 4fhz_A 195 ---------------PERLA---------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGI 250 (285)
T ss_dssp ---------------HHHHH---------HHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSC
T ss_pred ---------------chhhh---------hhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Confidence 01000 112346899999999999999999999999999999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHHHHh
Q 004149 750 ERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl~~~l 770 (771)
. .+.+..+.+||+++|
T Consensus 251 ~-----~~~l~~~~~fL~~~L 266 (285)
T 4fhz_A 251 A-----PDGLSVALAFLKERL 266 (285)
T ss_dssp C-----HHHHHHHHHHHHHHC
T ss_pred C-----HHHHHHHHHHHHHHC
Confidence 5 456789999999987
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=176.80 Aligned_cols=198 Identities=16% Similarity=0.126 Sum_probs=142.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-CCC----c
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGK----V 592 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~-~~~----~ 592 (771)
+.++...++.|. ....|+||++||++.. ...|......|++ ||.|+++|.++..+.|..+.... ... .
T Consensus 15 ~~~l~~~~~~~~----~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~ 87 (223)
T 3b5e_A 15 DLAFPYRLLGAG----KESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKS 87 (223)
T ss_dssp SSSSCEEEESTT----SSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHH
T ss_pred CCCceEEEeCCC----CCCCCEEEEEecCCCC--HHHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCcccHHH
Confidence 344555555553 2234999999997655 3467777777765 99999999876322122221110 000 0
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
.....+++.+.++++.++..++.++++|+|||+||.+++.++.++|++++++|+.+|.....
T Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~------------------ 149 (223)
T 3b5e_A 88 ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD------------------ 149 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCcc------------------
Confidence 11234566777777776645788999999999999999999999999999999998864210
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
. . .....+++|+|+++|++|..+|++.++ +++.+++.|.++++++++ ++|.+.
T Consensus 150 ~---------~--------------~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~-- 202 (223)
T 3b5e_A 150 H---------V--------------PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIG-- 202 (223)
T ss_dssp S---------C--------------CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCC--
T ss_pred c---------c--------------ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcC--
Confidence 0 0 012345789999999999999999999 999999999999999999 999885
Q ss_pred CChHHHHHHHHHHHHHHh
Q 004149 753 QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~~l 770 (771)
.+..+.+.+||++.+
T Consensus 203 ---~~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 203 ---DPDAAIVRQWLAGPI 217 (223)
T ss_dssp ---HHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHHhhh
Confidence 345678999997653
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=180.77 Aligned_cols=238 Identities=14% Similarity=0.246 Sum_probs=149.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+...++.+.. ..+..|+||++||.+.. ...|...+..|+++||.|+++|+||.+..... ......
T Consensus 28 ~~~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~-------~~~~~~ 96 (315)
T 4f0j_A 28 QGQPLSMAYLDVAP--KKANGRTILLMHGKNFC--AGTWERTIDVLADAGYRVIAVDQVGFCKSSKP-------AHYQYS 96 (315)
T ss_dssp TTEEEEEEEEEECC--SSCCSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC-------SSCCCC
T ss_pred CCCCeeEEEeecCC--CCCCCCeEEEEcCCCCc--chHHHHHHHHHHHCCCeEEEeecCCCCCCCCC-------CccccC
Confidence 34445544444432 34567999999997765 44688889999999999999999995443211 112345
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCC---cch-------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP---DWC------- 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~---~~~------- 666 (771)
.+++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+.+|.............. .+.
T Consensus 97 ~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (315)
T 4f0j_A 97 FQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWRSVDDWYRRDLQTS 174 (315)
T ss_dssp HHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCCCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhhhhHHHHhhcccCC
Confidence 77777777777766 345789999999999999999999999999999999864211100000000 000
Q ss_pred ------hhh-hccCCC-CCc----------CCCCCChh--------hHHHHhhcCccccccCCCCcEEEEeeCCCCccCc
Q 004149 667 ------YVE-SYGSKG-KDS----------FTESPSVE--------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPV 720 (771)
Q Consensus 667 ------~~~-~~~~~~-~~~----------~~~~~~~~--------~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~ 720 (771)
+.. .+.... ... ........ ........+....+.++++|+|+++|++|..+|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~lii~G~~D~~~p~ 254 (315)
T 4f0j_A 175 AEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQMPTLLLIGEKDNTAIG 254 (315)
T ss_dssp HHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCCCCTT
T ss_pred hHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCCCCeEEEEecCCCcCcc
Confidence 000 000000 000 00000000 0111122334456788999999999999999994
Q ss_pred HHH------------HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 721 SNG------------LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 721 ~~~------------~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++. .+..+.+.+...++++++++++||.+.. +...++.+.|.+||++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~ 313 (315)
T 4f0j_A 255 KDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQI-QAPERFHQALLEGLQT 313 (315)
T ss_dssp GGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHHH-HSHHHHHHHHHHHHCC
T ss_pred ccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchhh-hCHHHHHHHHHHHhcc
Confidence 433 3444445444456899999999998653 3456788888888864
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-20 Score=188.03 Aligned_cols=232 Identities=12% Similarity=0.059 Sum_probs=152.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCC--CCC---------CCC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYR--GSL---------GFG 581 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~V~~~d~r--G~~---------~~g 581 (771)
..|.++.+.+|.|++.. .+++|+||++||++... ..|. .....+++.||.|+++|.+ |.+ ++|
T Consensus 31 ~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~~~~~~G~g 107 (283)
T 4b6g_A 31 TLQCEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTE--QNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDDAYDLGQS 107 (283)
T ss_dssp TTTEEEEEEEEECCCTT-CCCEEEEEEECCTTCCS--HHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCCSSTTSBTT
T ss_pred hhCCceEEEEEeCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEEeccccccccccccccccccCC
Confidence 35778999999998654 67899999999987653 2332 2346677889999999964 432 122
Q ss_pred hhhhhcCCC-Ccc-ccchhh-HH-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh
Q 004149 582 EEALQSLPG-KVG-SQDVND-VL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 582 ~~~~~~~~~-~~~-~~~~~D-~~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 657 (771)
.++...... .+. .....+ +. +.+.++.+... +.+|++|+||||||++|+.++.++|++|+++++.+|+++.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~~ 186 (283)
T 4b6g_A 108 AGFYLNATEQPWAANYQMYDYILNELPRLIEKHFP-TNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSLVP 186 (283)
T ss_dssp BCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHSC-EEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESCCCCGGGSH
T ss_pred CcccccCccCcccchhhHHHHHHHHHHHHHHHhCC-CCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECCccccccCc
Confidence 222111111 110 011122 12 33444444432 46899999999999999999999999999999999987643210
Q ss_pred cCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC--CCcEEEEeeCCCCccCc-HHHHHHHHHHHhCC
Q 004149 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPV-SNGLQYARALREKG 734 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~-~~~~~~~~~l~~~g 734 (771)
.. ...+...++. ....+...+|...+.++ .+|+|++||+.|.+++. .++++++++|++.|
T Consensus 187 ~~----~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~g 249 (283)
T 4b6g_A 187 WG----EKAFTAYLGK-------------DREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAAN 249 (283)
T ss_dssp HH----HHHHHHHHCS-------------CGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHHT
T ss_pred ch----hhhHHhhcCC-------------chHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHcC
Confidence 00 0000011111 11223344555544444 35999999999999976 23889999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+++++.++|+++|.+. .....+..+++|+.++|+
T Consensus 250 ~~~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 250 QPVDVRFHKGYDHSYY---FIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp CCCEEEEETTCCSSHH---HHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhcC
Confidence 9999999999999863 234567889999999885
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-19 Score=192.96 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=151.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++.++++.|. ..++.|+||++||.+... ...+......|+++||.|+++|+|| +|.+.... ...+
T Consensus 176 ~g~~l~~~~~~P~---~~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G---~G~s~~~~-----~~~~ 243 (415)
T 3mve_A 176 EKGKITAHLHLTN---TDKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPS---VGYSSKYP-----LTED 243 (415)
T ss_dssp SSSEEEEEEEESC---SSSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTT---SGGGTTSC-----CCSC
T ss_pred CCEEEEEEEEecC---CCCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCC-----CCCC
Confidence 5788999999997 356789999999966442 2234445677889999999999999 44442111 1112
Q ss_pred h-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-h-cCCCCCcchhhhhccC
Q 004149 597 V-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-V-GTTDIPDWCYVESYGS 673 (771)
Q Consensus 597 ~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-~-~~~~~~~~~~~~~~~~ 673 (771)
. .....+++++.....+|.++|+|+|||+||++++.++..+|++++++|+.+|+++.... . .....+. .+...+..
T Consensus 244 ~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 322 (415)
T 3mve_A 244 YSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPK-MYLDVLAS 322 (415)
T ss_dssp TTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTTSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHHhHH-HHHHHHHH
Confidence 2 33356777877776678899999999999999999999999999999999998643211 0 0000110 00000000
Q ss_pred CCCCcCCCC-CCh-hhHHHHhhcCcccc----ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC-CC
Q 004149 674 KGKDSFTES-PSV-EDLTRFHSKSPISH----ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DV 746 (771)
Q Consensus 674 ~~~~~~~~~-~~~-~~~~~~~~~sp~~~----~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~~ 746 (771)
.+... ... .....+...++... +.++++|+|+++|++|.++|++.+..+.+ .+.+++++++++ ..
T Consensus 323 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~~~~l~~i~g~~~ 394 (415)
T 3mve_A 323 ----RLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAF----FSTYGKAKKISSKTI 394 (415)
T ss_dssp ----HTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHH----TBTTCEEEEECCCSH
T ss_pred ----HhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHH----hCCCceEEEecCCCc
Confidence 00000 011 11112222333221 46788999999999999999988877665 456689999998 33
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 747 HGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|. ...+.+..+.+||+++|+
T Consensus 395 h~-----~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 395 TQ-----GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHT
T ss_pred cc-----chHHHHHHHHHHHHHHhc
Confidence 32 345788999999999874
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-19 Score=185.96 Aligned_cols=219 Identities=16% Similarity=0.221 Sum_probs=150.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
+.++++.|.+ ++.|+||++|||++.. ....|...+..|+ +.||.|+++||||+++.. ....++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~-----------~~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFH-----------IDDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSC-----------HHHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCC-----------chHHHH
Confidence 5667788863 4569999999987543 2335556677776 569999999999965421 123478
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCc----eeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004149 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
|+.++++++.++ ++.++++|+|||+||.+|+.++.++|+. ++++|+.+|+.+....... ... ..... ..
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~--~~~-~~~~~-~~- 221 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKD--ISD-ALIEQ-DA- 221 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTT--CCH-HHHHH-CS-
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChh--HHh-hhccc-Cc-
Confidence 999999999887 6788999999999999999999887665 9999999998764321100 000 00000 00
Q ss_pred CCCcCCCCCChhhH----HHH--------hhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 675 GKDSFTESPSVEDL----TRF--------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 675 ~~~~~~~~~~~~~~----~~~--------~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
....... ..+ ...+|+...-...+|+||++|++|..+ .++..+.+.+++.+.+++++++
T Consensus 222 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~--~~~~~~~~~l~~~~~~~~~~~~ 292 (326)
T 3d7r_A 222 -------VLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMTH--PDMKLFEQMMLQHHQYIEFYDY 292 (326)
T ss_dssp -------SCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEE
T ss_pred -------ccCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCcccch--HHHHHHHHHHHHCCCcEEEEEe
Confidence 0000000 000 112232211112269999999999744 6778899999999999999999
Q ss_pred CCCCccCCC--CCChHHHHHHHHHHHHHHh
Q 004149 743 PNDVHGIER--PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 743 ~~~~H~~~~--~~~~~~~~~~i~~wl~~~l 770 (771)
++++|.+.. .+...++++.+.+||++++
T Consensus 293 ~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l 322 (326)
T 3d7r_A 293 PKMVHDFPIYPIRQSHKAIKQIAKSIDEDV 322 (326)
T ss_dssp TTCCTTGGGSSSHHHHHHHHHHHHHHTSCC
T ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHHh
Confidence 999998765 2445578899999998765
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=184.09 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=149.4
Q ss_pred CCceEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCCCcchH--HHHHH-HHCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 517 AQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSK--SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~----~~~~~p~vv~~HGg~~~~~~~~~~~--~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
.|.++.+++|.|++.. +.++.|+||++||++.. ...|.. .+..+ ++.||.|+++|+++++..... ..
T Consensus 17 ~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~ 90 (263)
T 2uz0_A 17 LDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGN--HNSWLKRTNVERLLRGTNLIVVMPNTSNGWYTDTQ----YG 90 (263)
T ss_dssp TTEEEEEEEEECC---------CCBCEEEEECCTTCC--TTHHHHHSCHHHHTTTCCCEEEECCCTTSTTSBCT----TS
T ss_pred hCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCC--HHHHHhccCHHHHHhcCCeEEEEECCCCCccccCC----Cc
Confidence 5678999999998652 35678999999998765 334544 24444 558999999999875332110 00
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCC-Ccchhh
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-PDWCYV 668 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~-~~~~~~ 668 (771)
........+|+...++.+..+..+|.++++|+|||+||++++.++. +|++++++++.+|..+...+...... ....+.
T Consensus 91 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 169 (263)
T 2uz0_A 91 FDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNFSPESQNLGSPAYW 169 (263)
T ss_dssp CBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSCCGGGTTCSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhccccccccccchhH
Confidence 0111112345555555443323457899999999999999999999 89999999999998765431100000 000000
Q ss_pred -hhccCCCCCcCCCCCChhhHHHHhhcCccccccCCC--CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 669 -ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 669 -~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
..++. .. ...+...+|...+.+++ +|+|++||++|.++ ..++.+++.+++.|.+++++++++
T Consensus 170 ~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v--~~~~~~~~~l~~~g~~~~~~~~~g- 234 (263)
T 2uz0_A 170 RGVFGE---------IR---DWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY--EANNLAVKNLKKLGFDVTYSHSAG- 234 (263)
T ss_dssp HHHHCC---------CS---CTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH--HHHHHHHHHHHHTTCEEEEEEESC-
T ss_pred HHHcCC---------hh---hhccccCCHHHHHHhccCCCeEEEEeCCCchhh--HHHHHHHHHHHHCCCCeEEEECCC-
Confidence 00110 00 01223445555556654 79999999999998 457899999999999999999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 746 VHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+|.+. ...+.+..+++||.++|+
T Consensus 235 ~H~~~---~~~~~~~~~~~~l~~~l~ 257 (263)
T 2uz0_A 235 THEWY---YWEKQLEVFLTTLPIDFK 257 (263)
T ss_dssp CSSHH---HHHHHHHHHHHHSSSCCC
T ss_pred CcCHH---HHHHHHHHHHHHHHhhcc
Confidence 99763 124667889999987764
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=179.68 Aligned_cols=206 Identities=11% Similarity=-0.036 Sum_probs=144.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----cchHHHHHHHHC----CcEEEEECCCCCCCCChhhhhc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSV----GYSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----~~~~~~~~la~~----G~~V~~~d~rG~~~~g~~~~~~ 587 (771)
.|.++.+.+|.|+++...++.|+||++||++...... .+...++.|+++ ||.|+++|+++.+.. .
T Consensus 42 ~~~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~~~~~~---~--- 115 (268)
T 1jjf_A 42 TNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPG---I--- 115 (268)
T ss_dssp TTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTT---C---
T ss_pred cCCceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCCCCCcc---c---
Confidence 4678999999999766677899999999977543211 123346777776 599999999984321 0
Q ss_pred CCCCccccchhh-HHHHHHHHHHcCCC--CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCc
Q 004149 588 LPGKVGSQDVND-VLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 664 (771)
Q Consensus 588 ~~~~~~~~~~~D-~~~~i~~l~~~~~~--d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~ 664 (771)
...+ ....++ +.++++++.++..+ |++|++|+|+|+||++++.++.++|++++++++.+|..+....
T Consensus 116 -~~~~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~-------- 185 (268)
T 1jjf_A 116 -ADGY-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPN-------- 185 (268)
T ss_dssp -SCHH-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCCH--------
T ss_pred -cccH-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCCCCCch--------
Confidence 0001 111233 44556677665444 7899999999999999999999999999999999997542110
Q ss_pred chhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCC-cEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 665 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~-P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
...+.. .. . ....+. |+|++||+.|.++| .++.+++.|++.|+++++++++
T Consensus 186 ---~~~~~~---------~~-~-------------~~~~~~pp~li~~G~~D~~v~--~~~~~~~~l~~~g~~~~~~~~~ 237 (268)
T 1jjf_A 186 ---ERLFPD---------GG-K-------------AAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQ 237 (268)
T ss_dssp ---HHHCTT---------TT-H-------------HHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEET
T ss_pred ---hhhcCc---------ch-h-------------hhhhcCceEEEEecCCCCCcc--HHHHHHHHHHHCCCceEEEEcC
Confidence 000000 00 0 001123 59999999999997 4778999999999999999999
Q ss_pred CCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 744 NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+++|.+. ...+.+..+++||.++
T Consensus 238 g~~H~~~---~~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 238 GGGHDFN---VWKPGLWNFLQMADEA 260 (268)
T ss_dssp TCCSSHH---HHHHHHHHHHHHHHHH
T ss_pred CCCcCHh---HHHHHHHHHHHHHHhc
Confidence 9999864 2335567888998775
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-19 Score=174.08 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=139.7
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEE--CCCCCCCCChhhh-hc-CCCCcc----ccchhhHHHHHHH
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEAL-QS-LPGKVG----SQDVNDVLTAIDH 606 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~--d~rG~~~~g~~~~-~~-~~~~~~----~~~~~D~~~~i~~ 606 (771)
++.|+||++||++.. ...|...+..|++ ||.|+++ |++|. |.+.. .. ...... ..+++++.+.+++
T Consensus 36 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~~~d~~g~---g~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGN--ELDLLPLAEIVDS-EASVLSVRGNVLEN---GMPRFFRRLAEGIFDEEDLIFRTKELNEFLDE 109 (226)
T ss_dssp TTSCEEEEECCTTCC--TTTTHHHHHHHHT-TSCEEEECCSEEET---TEEESSCEEETTEECHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCC--hhHHHHHHHHhcc-CceEEEecCcccCC---cchhhccccCccCcChhhHHHHHHHHHHHHHH
Confidence 568999999997765 4467778888877 9999999 77774 32210 00 001111 1124456666766
Q ss_pred HHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChh
Q 004149 607 VIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE 686 (771)
Q Consensus 607 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (771)
+.++..++.++++++|||+||.+++.++.++|++++++|+.+|......
T Consensus 110 ~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------------------- 158 (226)
T 2h1i_A 110 AAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------------------------- 158 (226)
T ss_dssp HHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------------------------
T ss_pred HHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------------------------
Confidence 6777667889999999999999999999999999999999998743110
Q ss_pred hHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 687 DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 687 ~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
......+++|+|+++|+.|..+|++.++.+++.+.+.+.++++ ++++++|.+. .+..+.+.+||
T Consensus 159 ----------~~~~~~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l 222 (226)
T 2h1i_A 159 ----------MQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWY 222 (226)
T ss_dssp ----------CCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHH
T ss_pred ----------cccccccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHH
Confidence 0112234789999999999999999999999999988888888 9999999884 46788999999
Q ss_pred HHHh
Q 004149 767 KKYC 770 (771)
Q Consensus 767 ~~~l 770 (771)
.++|
T Consensus 223 ~~~l 226 (226)
T 2h1i_A 223 DKAF 226 (226)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9875
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-20 Score=190.04 Aligned_cols=226 Identities=18% Similarity=0.194 Sum_probs=151.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+| .+.+++| +. .++.|+||++|||++... ...+...+..|+ +.||.|+++||||.+++. .
T Consensus 64 ~~g-~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~-----------~ 126 (311)
T 1jji_A 64 RNG-DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK-----------F 126 (311)
T ss_dssp TTE-EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC-----------T
T ss_pred CCC-cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCC-----------C
Confidence 344 7888888 42 356799999999885332 346677788887 689999999999965531 1
Q ss_pred ccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhCCCc----eeEEEecCCccchhhhh----cCCCC
Q 004149 594 SQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMV----GTTDI 662 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~----~~~~~ 662 (771)
....+|+.++++|+.+.. .+++++|+|+|+|+||.+++.++.++++. ++++|+.+|+.+..... .....
T Consensus 127 p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~ 206 (311)
T 1jji_A 127 PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEG 206 (311)
T ss_dssp THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCHHHHHTSSS
T ss_pred CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCCCccHHHhcCC
Confidence 234788999999988752 36778999999999999999999887665 99999999987642110 00000
Q ss_pred Cc-c--hhhhhccCCCCCcCCCCCChhhHHHHhhcCccc-cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 663 PD-W--CYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 663 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.. + .....+. ..+.... . .......+|+. .+..+ +|+||++|+.|.++ .++..+++.|++.+++++
T Consensus 207 ~~~~~~~~~~~~~----~~~~~~~--~-~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~--~~~~~~~~~l~~~g~~~~ 276 (311)
T 1jji_A 207 LWILDQKIMSWFS----EQYFSRE--E-DKFNPLASVIFADLENL-PPALIITAEYDPLR--DEGEVFGQMLRRAGVEAS 276 (311)
T ss_dssp CSSCCHHHHHHHH----HHHCSSG--G-GGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHHHHTTCCEE
T ss_pred CccCCHHHHHHHH----HHhCCCC--c-cCCCcccCcccccccCC-ChheEEEcCcCcch--HHHHHHHHHHHHcCCCEE
Confidence 00 0 0000000 0000000 0 00011223432 22232 69999999999998 577889999999999999
Q ss_pred EEEeCCCCccCCCC----CChHHHHHHHHHHHHH
Q 004149 739 VIVFPNDVHGIERP----QSDFESFLNIGLWFKK 768 (771)
Q Consensus 739 ~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~ 768 (771)
++++++++|.+... +...++++.+.+||++
T Consensus 277 ~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 277 IVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp EEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 99999999987532 3345678888999874
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=192.58 Aligned_cols=261 Identities=16% Similarity=0.118 Sum_probs=170.8
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
...++|||||++|||+...+ +..+++.++ .+++.++++...... ...+.|||||++|+|++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~-g~~~l~~~d~~~~~~~~l~~~~~~~---------~~~~~~spdg~~l~~~~~~------ 101 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFD-GNRNYYLLNLETQQAVQLTEGKGDN---------TFGGFISTDERAFFYVKNE------ 101 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTTEEEECCCSSCBC---------TTTCEECTTSSEEEEEETT------
T ss_pred eecCcCCCCCCEEEEEEecC-CCceEEEEECCCCcEEEeecCCCCc---------cccceECCCCCEEEEEEcC------
Confidence 56789999999999998764 556788887 555555544322211 1248899999999998532
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
.+|+++|+.+++.+.+. .... .|+|||+. |+
T Consensus 102 --------------------------------------~~l~~~d~~~~~~~~~~--~~~~-----~~~~~g~~----l~ 132 (396)
T 3c5m_A 102 --------------------------------------LNLMKVDLETLEEQVIY--TVDE-----EWKGYGTW----VA 132 (396)
T ss_dssp --------------------------------------TEEEEEETTTCCEEEEE--ECCT-----TEEEEEEE----EE
T ss_pred --------------------------------------CcEEEEECCCCCcEEEE--eccc-----ccCCCCCE----EE
Confidence 36999999999888773 2111 16677666 66
Q ss_pred EEeecC-------------cceeeeeee--eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceee
Q 004149 260 FVGWSS-------------ETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 324 (771)
Q Consensus 260 ~~~~~~-------------~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~ 324 (771)
|.+... +...+.... .......||++|+ .+++.+.++.....+..+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~-----------------~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI-----------------ETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET-----------------TTCCEEEEEEESSCEEEEEE
T ss_pred eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC-----------------CCCcEEeeccCCcccccceE
Confidence 642110 000000000 0024458999998 77888777766666788999
Q ss_pred cC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004149 325 SP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 325 Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l 403 (771)
|| ||++|+|.+... ......+|+++|+.++..+.++..... ..+..+.|||||+.|
T Consensus 196 sp~dg~~l~~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~~~------------------~~~~~~~~spdg~~l 252 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGP-----HDLVDARMWLVNEDGSNVRKIKEHAEG------------------ESCTHEFWIPDGSAM 252 (396)
T ss_dssp ETTEEEEEEEEECSC-----SSSCSCCCEEEETTSCCCEESSCCCTT------------------EEEEEEEECTTSSCE
T ss_pred CCCCCCEEEEEecCC-----CCCCCceEEEEECCCCceeEeeccCCC------------------ccccceEECCCCCEE
Confidence 99 899999998532 111125799999887665444321000 012356899999999
Q ss_pred EEEeeeCCee--EEEEEECCCCcEEEecCCCCCceeeEEee-cCCEEEEEEeC------------CCCCCeEEEEEeccc
Q 004149 404 LLSSIWGSSQ--VIISVNVSSGELLRITPAESNFSWSLLTL-DGDNIIAVSSS------------PVDVPQVKYGYFVDK 468 (771)
Q Consensus 404 ~~~~~~~~~~--~l~~~d~~tg~~~~l~~~~~~~~~~~~s~-d~~~l~~~~s~------------~~~p~~l~~~~~~~~ 468 (771)
++.+...+.. .|+.+|+.+++.+.+..... .. ..|++ ||+.+++..+. ......||+.++.++
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 253 AYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 8887765554 49999999999888764433 23 78999 99976664432 112367888886544
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-18 Score=205.71 Aligned_cols=328 Identities=11% Similarity=0.008 Sum_probs=210.1
Q ss_pred ceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccc-------eEEEeCCCCCeEE
Q 004149 42 KAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA-------SAVVPSPSGSKLL 114 (771)
Q Consensus 42 ~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~-------~~~~~SPdG~~la 114 (771)
.....+..||||++|+|...... ......||++++. ++..++|+..+ ..+ ..++|||||+ ++
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~---~~~~~~i~~~d~~--~g~~~~lt~~~-----~~~~~~~~~~~~~~~SpDg~-ll 121 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGS---SLNTADLYFYNGE--NGEIKRITYFS-----GKSTGRRMFTDVAGFDPDGN-LI 121 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEEST---TCCEEEEEEEETT--TTEEEECCCCC-----EEEETTEECSEEEEECTTCC-EE
T ss_pred CcccCeEECCCCCEEEEEEeecc---CCCCCeEEEEECC--CCCeEEcccCC-----CcccccccccccccCCCCCE-EE
Confidence 34556778999999999875421 1234678887763 44566776544 334 7899999998 77
Q ss_pred EEecCCC---CCCeEEEEe-cCCcceEEEecC------------------------------------------------
Q 004149 115 VVRNPEN---ESPIQFELW-SQSQLEKEFHVP------------------------------------------------ 142 (771)
Q Consensus 115 ~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~------------------------------------------------ 142 (771)
|++.... ...++|.++ .++..++++...
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~ 201 (1045)
T 1k32_A 122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD 201 (1045)
T ss_dssp EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred EEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcC
Confidence 8776431 234577666 343322211100
Q ss_pred --------------------Cccccccc-------------CCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004149 143 --------------------QTVHGSVY-------------ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 143 --------------------~~~~g~~~-------------~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
.+....+| ....+..++|||||++|+|..... ...|+.. ....
T Consensus 202 ~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~---i~~~d~~-~~~l 277 (1045)
T 1k32_A 202 MSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGS---IYIFNPD-TEKI 277 (1045)
T ss_dssp CSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTE---EEEECTT-TCCE
T ss_pred CCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCE---EEEecCC-ceEe
Confidence 00000010 011233567888888888864211 0011110 0000
Q ss_pred CCCc-----------cCCCCCCccccc-CCcCcccCCccCceEEEEEccCCceeeccCCCCCC-ccceEEEecCCCCCcc
Q 004149 190 SSDK-----------DCNSWKGQGDWE-EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 190 ~~~~-----------~~~~~~~~~~~~-~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~-~~~~~~wspDg~~~~~ 256 (771)
.... .+......+.|+ ||....+ ......|+++++.+++.+.+ ..... .+..++|| ||+.
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la-~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~s-dg~~--- 350 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIA-FVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGD-TKVA--- 350 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEE-EEETTEEEEECTTSSBEEEC--SCCSCEEEEEECSS-SEEE---
T ss_pred eeeccCcccccccccccccccceeeecCCCCCEEE-EEEcCEEEEEcCCCCceEEc--cCCCcceEEeeeEc-CCCe---
Confidence 0000 011133456788 8854333 33477999999999988887 44444 67889999 9998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeE-EEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALY-AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+|.+. ..+|| ++++ .+++.+.++.+...+..+.|||||++|++.+
T Consensus 351 -l~~~s~---------------~~~l~~~~d~-----------------~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 351 -FIHGTR---------------EGDFLGIYDY-----------------RTGKAEKFEENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp -EEEEET---------------TEEEEEEEET-----------------TTCCEEECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred -EEEEEC---------------CCceEEEEEC-----------------CCCCceEecCCccceeeeEECCCCCEEEEEC
Confidence 998872 23799 9998 7777888885556788999999999999987
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-----
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG----- 410 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~----- 410 (771)
.+. .|+++|+.+++.+.+.... ...+..++|||||++|++.+...
T Consensus 398 ~~~-----------~v~~~d~~tg~~~~~~~~~-------------------~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 398 DRF-----------EIMTVDLETGKPTVIERSR-------------------EAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp TTS-----------EEEEEETTTCCEEEEEECS-------------------SSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred CCC-----------eEEEEECCCCceEEeccCC-------------------CCCccceEECCCCCeEEEEecCcccccc
Confidence 652 5999999887654332111 01245789999999998877643
Q ss_pred --CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCC
Q 004149 411 --SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 411 --~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~ 454 (771)
....|+.+|+.+++...++........+.|++||+.|++.....
T Consensus 448 ~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp SCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred CCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 34679999999999888877655555678999999999877543
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=164.99 Aligned_cols=174 Identities=11% Similarity=0.138 Sum_probs=128.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
++.|+||++||.+.......+......|+++||.|+++|+||. |.+.... ......+++..+++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~---g~s~~~~----~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTDL---DARRDLG----QLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHHH---HTCGGGC----TTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCCC---CCCCCCC----CCCCHHHHHHHHHHHHHhcC--C
Confidence 4578999999977553322344778889999999999999984 3332111 11112344455666666553 3
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhc
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 694 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (771)
.++++++|||+||.+++.++.++| ++++|+.+|......+ +
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~--------------------------~----------- 113 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL--------------------------P----------- 113 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB--------------------------C-----------
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc--------------------------C-----------
Confidence 579999999999999999999988 9999999887542100 0
Q ss_pred CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 695 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 695 sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
.+.++++|+|+++|++|..+|++.++++++.+ +++++++ +++|.+. +...++.+.+.+||++
T Consensus 114 ----~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~-~~~H~~~--~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 114 ----ALDAAAVPISIVHAWHDELIPAADVIAWAQAR-----SARLLLV-DDGHRLG--AHVQAASRAFAELLQS 175 (176)
T ss_dssp ----CCCCCSSCEEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE-SSCTTCT--TCHHHHHHHHHHHHHT
T ss_pred ----cccccCCCEEEEEcCCCCccCHHHHHHHHHhC-----CceEEEe-CCCcccc--ccHHHHHHHHHHHHHh
Confidence 04567899999999999999999999998887 3688888 8999883 5566788888888864
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-18 Score=171.03 Aligned_cols=194 Identities=17% Similarity=0.147 Sum_probs=137.3
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-----CcEEEEECCCCCC------CCChhhhhc----CCCCccccchh
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-----GYSLLIVNYRGSL------GFGEEALQS----LPGKVGSQDVN 598 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-----G~~V~~~d~rG~~------~~g~~~~~~----~~~~~~~~~~~ 598 (771)
.++.|+||++||.+.. ...|...+..|+.+ ||.|++++.++.. +.+..|... .........++
T Consensus 20 ~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 97 (239)
T 3u0v_A 20 GRHSASLIFLHGSGDS--GQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESID 97 (239)
T ss_dssp SCCCEEEEEECCTTCC--HHHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHH
T ss_pred CCCCcEEEEEecCCCc--hhhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHH
Confidence 4568999999996654 33566677777765 6999999986421 111111110 00011112344
Q ss_pred hHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 599 DVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 599 D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
++.+.+..+++. ..++.++++|+|||+||++++.++.++|+.++++|+.+|..+....
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------------------- 158 (239)
T 3u0v_A 98 VMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------------------- 158 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH-------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH-------------------
Confidence 444444444332 3468899999999999999999999999999999999987542110
Q ss_pred CCcCCCCCChhhHHHHhhcCccccccCCCCc-EEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC
Q 004149 676 KDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
..... ......+| +|++||++|..+|+++++.+++.+++.+.+++++++++++|.+.
T Consensus 159 -----------~~~~~-------~~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~---- 216 (239)
T 3u0v_A 159 -----------VYQAL-------QKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS---- 216 (239)
T ss_dssp -----------HHHHH-------HHCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC----
T ss_pred -----------HHHHH-------HhhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC----
Confidence 00000 01233456 99999999999999999999999999999999999999999986
Q ss_pred hHHHHHHHHHHHHHHhC
Q 004149 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~wl~~~l~ 771 (771)
.+..+.+.+||+++|+
T Consensus 217 -~~~~~~~~~~l~~~l~ 232 (239)
T 3u0v_A 217 -KTELDILKLWILTKLP 232 (239)
T ss_dssp -HHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHhCC
Confidence 4678899999998874
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-19 Score=183.22 Aligned_cols=216 Identities=17% Similarity=0.186 Sum_probs=146.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCCC---------C--Ch
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLG---------F--GE 582 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~V~~~d~rG~~~---------~--g~ 582 (771)
..++.++.+++|.|++. ..+.|+||++||++... ..| ......++++||.|+++|+|+... + |.
T Consensus 34 ~~~~~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~~~~~g~~~g~ 109 (304)
T 3d0k_A 34 RNADRPFTLNTYRPYGY--TPDRPVVVVQHGVLRNG--ADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTA 109 (304)
T ss_dssp -CTTCCEEEEEEECTTC--CTTSCEEEEECCTTCCH--HHHHHHTHHHHHHHTCEEEEEECCTTTSCHHHHTTTTTCBCT
T ss_pred CCCCceEEEEEEeCCCC--CCCCcEEEEeCCCCCCH--HHHHHHHHHHHHHCCcEEEEeCCccccCCCccccccCccccc
Confidence 56788899999999743 34679999999987653 344 445677888999999999996411 1 11
Q ss_pred hhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-ceeEEEecC-CccchhhhhcCC
Q 004149 583 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARN-PLCNLALMVGTT 660 (771)
Q Consensus 583 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~-p~~~~~~~~~~~ 660 (771)
+. .........++|+.++++++.++..++.++|+|+|||+||++++.++.++|+ .++++|+.+ |..++...
T Consensus 110 s~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~~~~---- 182 (304)
T 3d0k_A 110 AG---NPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTF---- 182 (304)
T ss_dssp TS---CBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCCSST----
T ss_pred cC---CCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCcccccCCc----
Confidence 10 0111122346789999999998766889999999999999999999999985 788888655 55432211
Q ss_pred CCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccC-----------------cHHH
Q 004149 661 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP-----------------VSNG 723 (771)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp-----------------~~~~ 723 (771)
...|. ++. ... ..+|......+++|+|++||+.|..+. .+.+
T Consensus 183 -~~~~~----~~~------~~~----------~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (304)
T 3d0k_A 183 -EHRFP----EGL------DGV----------GLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARA 241 (304)
T ss_dssp -TSBTT----TSS------BTT----------TCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHH
T ss_pred -cccCc----ccc------CCC----------CCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHH
Confidence 00000 000 000 012333333456899999999999742 3456
Q ss_pred HHHHHHHH----hCCCC--EEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 724 LQYARALR----EKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 724 ~~~~~~l~----~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
..+++.++ +.|++ ++++++|+++|.+. .....+.+||.+
T Consensus 242 ~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~~------~~~~~~~~~~~~ 286 (304)
T 3d0k_A 242 RHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQ------AMSQVCASLWFD 286 (304)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEETTCCSCHH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeCCCCCchH------HHHHHHHHHHhh
Confidence 67777776 66776 99999999999873 456677777754
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=190.64 Aligned_cols=251 Identities=15% Similarity=0.150 Sum_probs=153.2
Q ss_pred cccCCCceEEEEEEecCCCC--CCCCCcEEEEEcCCCCCCCCC----cchHHHHHHHHCCcEEEEECCCCCCCCChhhhh
Q 004149 513 LTKGAQKPFEAIFVSSSHKK--DCSCDPLIVVLHGGPHSVSLS----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~--~~~~~p~vv~~HGg~~~~~~~----~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~ 586 (771)
+...+|..+.++.+.|.... ..++.|+||++||.+...... .+...+..|+++||.|+++|+||.+.+......
T Consensus 32 ~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~G~S~~~~~~ 111 (377)
T 1k8q_A 32 VVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYY 111 (377)
T ss_dssp EECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTSTTSCEESSS
T ss_pred eEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCCCCCCCCCCC
Confidence 34557888998888765211 113678999999976553210 122345588999999999999995443221000
Q ss_pred -cCCC---Cccc-cchh-hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCccchhhhh
Q 004149 587 -SLPG---KVGS-QDVN-DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMV 657 (771)
Q Consensus 587 -~~~~---~~~~-~~~~-D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~ 657 (771)
.... .+.. ...+ |+.++++++.+.. +.++++|+||||||.+++.++.++|+ +++++|+.+|........
T Consensus 112 ~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~~~~~~~~~~ 189 (377)
T 1k8q_A 112 SPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTE 189 (377)
T ss_dssp CTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCSCCSSCC
T ss_pred CCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeCCchhcccch
Confidence 0000 1111 1234 7888888887752 45789999999999999999999998 899999999875422100
Q ss_pred ------------------cCCC-CCcchhhh----hc------------------cC-------CCCCc-CCCCCCh---
Q 004149 658 ------------------GTTD-IPDWCYVE----SY------------------GS-------KGKDS-FTESPSV--- 685 (771)
Q Consensus 658 ------------------~~~~-~~~~~~~~----~~------------------~~-------~~~~~-~~~~~~~--- 685 (771)
+... .+...... .. +. ..... +...+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (377)
T 1k8q_A 190 TLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTSV 269 (377)
T ss_dssp SGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHHTTCCCCEEH
T ss_pred hHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCcccCCHHHHHHHhccCCCCccH
Confidence 0000 00000000 00 00 00000 0000000
Q ss_pred h------------------------hHHHHhhcC-ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE-E
Q 004149 686 E------------------------DLTRFHSKS-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK-V 739 (771)
Q Consensus 686 ~------------------------~~~~~~~~s-p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~-~ 739 (771)
. ....+.... +...+.++++|+|+++|++|.++|++.++.+++.+.. .+ +
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~ 345 (377)
T 1k8q_A 270 QNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPN----LIYH 345 (377)
T ss_dssp HHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCTT----EEEE
T ss_pred HHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccCHHHHHHHHHhCcC----cccE
Confidence 0 111111111 2334788999999999999999999998888777654 44 8
Q ss_pred EEeCCCCccCCC--CCChHHHHHHHHHHHHHH
Q 004149 740 IVFPNDVHGIER--PQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 740 ~~~~~~~H~~~~--~~~~~~~~~~i~~wl~~~ 769 (771)
++++++||.... .+...++++.|.+||+++
T Consensus 346 ~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 346 RKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp EEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred EecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 999999998653 455667889999999864
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-19 Score=189.32 Aligned_cols=250 Identities=19% Similarity=0.216 Sum_probs=155.0
Q ss_pred cccccCCCceEEEEEEecCC---CCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH----HCCc---EEEEECCCCCCCC
Q 004149 511 ANLTKGAQKPFEAIFVSSSH---KKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS----SVGY---SLLIVNYRGSLGF 580 (771)
Q Consensus 511 ~~~~~~~g~~l~~~~~~P~~---~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la----~~G~---~V~~~d~rG~~~~ 580 (771)
.++...+|..+++..+.|.+ ..+.++.|+||++||.+.. ...|...+..|+ +.|| .|+++|+|| +
T Consensus 23 ~~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G---~ 97 (398)
T 2y6u_A 23 STLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMS--KVVWEYYLPRLVAADAEGNYAIDKVLLIDQVN---H 97 (398)
T ss_dssp SBSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCC--GGGGGGGGGGSCCCBTTTTEEEEEEEEECCTT---S
T ss_pred ccccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHHHHhhhhcCcceeEEEEEcCCC---C
Confidence 34566789999999998863 1123456899999997765 346777777787 4589 999999999 6
Q ss_pred ChhhhhcCCCCccccc----hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh
Q 004149 581 GEEALQSLPGKVGSQD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~----~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~ 656 (771)
|.+............. ++|+.+.++.+.....+++.+++|+||||||.+++.++.++|++++++|+.+|.......
T Consensus 98 G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 177 (398)
T 2y6u_A 98 GDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKA 177 (398)
T ss_dssp HHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCC
T ss_pred CCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEeccccccccc
Confidence 6664321110011122 344444444332111134456999999999999999999999999999999987653110
Q ss_pred hc--CCCCCc----c--hhhhhccCCC-------------C--CcCCCCCChhhHHHHhh--------------------
Q 004149 657 VG--TTDIPD----W--CYVESYGSKG-------------K--DSFTESPSVEDLTRFHS-------------------- 693 (771)
Q Consensus 657 ~~--~~~~~~----~--~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~-------------------- 693 (771)
.. ....+. + .+...+.... . ..+...........+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T 2y6u_A 178 IGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKM 257 (398)
T ss_dssp CSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESS
T ss_pred cccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecC
Confidence 00 000000 0 0000000000 0 00000011111111100
Q ss_pred ----------------cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHH
Q 004149 694 ----------------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFE 757 (771)
Q Consensus 694 ----------------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 757 (771)
......+.++++|+|+++|++|.++|++.++.+++.+. .+++++++++||.+.. +...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~~~~~~~l~~~~~----~~~~~~~~~~gH~~~~-e~p~~ 332 (398)
T 2y6u_A 258 EQAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQ----NYHLDVIPGGSHLVNV-EAPDL 332 (398)
T ss_dssp CHHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEETTCCTTHHH-HSHHH
T ss_pred CchhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCCHHHHHHHHHhCC----CceEEEeCCCCccchh-cCHHH
Confidence 01124567889999999999999999998888777664 4899999999997653 34567
Q ss_pred HHHHHHHHHHHHh
Q 004149 758 SFLNIGLWFKKYC 770 (771)
Q Consensus 758 ~~~~i~~wl~~~l 770 (771)
+.+.+.+||++++
T Consensus 333 ~~~~i~~fl~~~~ 345 (398)
T 2y6u_A 333 VIERINHHIHEFV 345 (398)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998875
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=179.97 Aligned_cols=220 Identities=11% Similarity=0.119 Sum_probs=137.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~- 593 (771)
..+|..++++.+.|.+. ..++.|+||++||.+.. ...|...+..|+++||.|+++|+||.. |.+... ...+.
T Consensus 14 ~~dG~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~--~~~~~~~~~~L~~~G~~Vi~~D~rGh~--G~S~~~--~~~~~~ 86 (305)
T 1tht_A 14 VNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHV--GLSSGS--IDEFTM 86 (305)
T ss_dssp ETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC------------CCCH
T ss_pred cCCCCEEEEEEecCccc-CCCCCCEEEEecCCccC--chHHHHHHHHHHHCCCEEEEeeCCCCC--CCCCCc--ccceeh
Confidence 44678899888877531 12356899999996654 347888999999999999999999941 333211 11111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchh--hhhc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESY 671 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~--~~~~ 671 (771)
....+|+.++++++.+. +.++++|+||||||.+++.++.+ | +++++|+.++..+............+.. ....
T Consensus 87 ~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (305)
T 1tht_A 87 TTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFDYLSLPIDEL 161 (305)
T ss_dssp HHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSCGGGSCGGGC
T ss_pred HHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhhhhhcchhhC
Confidence 12257788888888743 34789999999999999999988 7 7899998887654321110000000000 0000
Q ss_pred cCCCCCcCCCCC-Chhh-HHHHhhc------CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 672 GSKGKDSFTESP-SVED-LTRFHSK------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 672 ~~~~~~~~~~~~-~~~~-~~~~~~~------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
.. ... +.... .... ....... +....+.++++|+|+++|++|..+|++.++.+++.+.. .++++++++
T Consensus 162 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~~--~~~~l~~i~ 237 (305)
T 1tht_A 162 PN-DLD-FEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLYSLL 237 (305)
T ss_dssp CS-EEE-ETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT--CCEEEEEET
T ss_pred cc-ccc-ccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcCC--CCcEEEEeC
Confidence 00 000 00000 0000 0111111 12345778999999999999999999988887765532 348999999
Q ss_pred CCCccCC
Q 004149 744 NDVHGIE 750 (771)
Q Consensus 744 ~~~H~~~ 750 (771)
++||.+.
T Consensus 238 ~agH~~~ 244 (305)
T 1tht_A 238 GSSHDLG 244 (305)
T ss_dssp TCCSCTT
T ss_pred CCCCchh
Confidence 9999875
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=180.26 Aligned_cols=253 Identities=15% Similarity=0.052 Sum_probs=153.2
Q ss_pred ccccCCC--ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-Cc-----chHHHHHHH-HCCcEEEEECCCCCCCCCh
Q 004149 512 NLTKGAQ--KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SS-----YSKSLAFLS-SVGYSLLIVNYRGSLGFGE 582 (771)
Q Consensus 512 ~~~~~~g--~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~-----~~~~~~~la-~~G~~V~~~d~rG~~~~g~ 582 (771)
...+.+| ..+.++++.|.+. .++.|+|++.||....... .. ....+..|+ ++||+|+++||||.++++.
T Consensus 49 ~s~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D~rG~G~s~~ 126 (377)
T 4ezi_A 49 KTQSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNEL 126 (377)
T ss_dssp EEECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEECCTTSTTCCC
T ss_pred EEECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeCCCCCCCCCC
Confidence 4444445 5588999999853 4678999999997642211 11 123456678 9999999999999766543
Q ss_pred hhhhcCCCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHhCC----C-ceeEEEecCCccchhhh
Q 004149 583 EALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAP----D-KFVAAAARNPLCNLALM 656 (771)
Q Consensus 583 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~-~~~a~v~~~p~~~~~~~ 656 (771)
....-.........+.|..+++..+.+. +..+.++|+++|||+||++++.++..+| + .+++++..++..++...
T Consensus 127 ~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~~~~~p~dl~~~ 206 (377)
T 4ezi_A 127 TLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVAPGSAPYGWEET 206 (377)
T ss_dssp SSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEEEESCCCCHHHH
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEEecCcccCHHHH
Confidence 1100000000111233444444444333 3235689999999999999999988754 3 58899999988876532
Q ss_pred hcCCC---C-C--cch----------------hhhhccCCCC-------C----------cCC----CCCChhhHHHHh-
Q 004149 657 VGTTD---I-P--DWC----------------YVESYGSKGK-------D----------SFT----ESPSVEDLTRFH- 692 (771)
Q Consensus 657 ~~~~~---~-~--~~~----------------~~~~~~~~~~-------~----------~~~----~~~~~~~~~~~~- 692 (771)
....+ . . .+. ....+..... . .+. ..........+.
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (377)
T 4ezi_A 207 MHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLIFQPKFSNGIIS 286 (377)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGGBCHHHHHHHHT
T ss_pred HHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHHhchhhhhhccc
Confidence 21100 0 0 000 0000000000 0 000 000000000000
Q ss_pred hcCc-cc--------cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--CCccCCCCCChHHHHHH
Q 004149 693 SKSP-IS--------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN--DVHGIERPQSDFESFLN 761 (771)
Q Consensus 693 ~~sp-~~--------~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~~~~~~~~~~~~~~ 761 (771)
..+| +. .-.++++|+||+||++|.+||+.+++++++++++.|. ++++.+++ .+|... ....+..
T Consensus 287 ~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~~~~~~H~~~----~~~~~~~ 361 (377)
T 4ezi_A 287 KTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSVSDALDHVQA----HPFVLKE 361 (377)
T ss_dssp TCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEESCSSCCTTTT----HHHHHHH
T ss_pred ccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcCCCCCCccCh----HHHHHHH
Confidence 0122 10 1125679999999999999999999999999999999 99999999 899754 3567889
Q ss_pred HHHHHHHHhC
Q 004149 762 IGLWFKKYCK 771 (771)
Q Consensus 762 i~~wl~~~l~ 771 (771)
+++||+++++
T Consensus 362 ~~~wl~~~~~ 371 (377)
T 4ezi_A 362 QVDFFKQFER 371 (377)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 9999999864
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-19 Score=176.55 Aligned_cols=185 Identities=17% Similarity=0.116 Sum_probs=135.6
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEE--CCCCCCCCChhhh-hcCCCC--ccccchhhHHHHHHHHHH
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEAL-QSLPGK--VGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~--d~rG~~~~g~~~~-~~~~~~--~~~~~~~D~~~~i~~l~~ 609 (771)
++.|+||++||++.. ...|...+..|++ +|.|+++ |++|.++++.... ...... .....++|+.++++++.+
T Consensus 60 ~~~p~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGD--ENQFFDFGARLLP-QATILSPVGDVSEHGAARFFRRTGEGVYDMVDLERATGKMADFIKANRE 136 (251)
T ss_dssp TTSCEEEEECCTTCC--HHHHHHHHHHHST-TSEEEEECCSEEETTEEESSCBCGGGCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCC--HhHHHHHHHhcCC-CceEEEecCCcCCCCCcccccCCCCCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 567999999997754 3456667777766 5999999 6777443211000 000000 011235677777777766
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHH
Q 004149 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
+. +.++++|+|||+||++++.++.++|++++++|+.+|......
T Consensus 137 ~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~---------------------------------- 180 (251)
T 2r8b_A 137 HY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP---------------------------------- 180 (251)
T ss_dssp HH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC----------------------------------
T ss_pred cc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc----------------------------------
Confidence 53 678999999999999999999999999999999998753210
Q ss_pred HHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 690 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
......+++|+|+++|++|.++|++.++++++.+++.+.++++ .+++++|.+. .+..+.+.+||+++
T Consensus 181 -------~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~ 247 (251)
T 2r8b_A 181 -------KISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAY 247 (251)
T ss_dssp -------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGG
T ss_pred -------cccccccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHh
Confidence 0112345789999999999999999999999999987777777 5667899874 45678999999988
Q ss_pred hC
Q 004149 770 CK 771 (771)
Q Consensus 770 l~ 771 (771)
|+
T Consensus 248 l~ 249 (251)
T 2r8b_A 248 GG 249 (251)
T ss_dssp C-
T ss_pred cC
Confidence 74
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-18 Score=171.34 Aligned_cols=230 Identities=13% Similarity=0.125 Sum_probs=143.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cc-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~-~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+|.++ .+|.|+. ++.|+||++|||++..... .+ ......+++.||.|+++|||+.+++ ...
T Consensus 13 ~~~~~--~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~-----------~~p 75 (274)
T 2qru_A 13 NGATV--TIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT-----------KID 75 (274)
T ss_dssp TSCEE--EEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS-----------CHH
T ss_pred CCeeE--EEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC-----------CCc
Confidence 34444 5777762 5679999999998755332 33 4456678889999999999986542 223
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHH---hCCCceeEEEecCCccchhhhhcCCC--CCc--chh
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLCNLALMVGTTD--IPD--WCY 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~p~~~~~~~~~~~~--~~~--~~~ 667 (771)
..++|+.++++|+.++.. ++++|+|+|+|+||.+|+.++. ..+..++++++.+|..+......... .+. ...
T Consensus 76 ~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (274)
T 2qru_A 76 HILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAISAKE 154 (274)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCCCSGG
T ss_pred HHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccccHHH
Confidence 458999999999998742 2689999999999999999987 35677889998888776221110000 000 000
Q ss_pred hhhc-cCCCCCcCCCCCChh---------hHHHHhh--------cCcc--ccccCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004149 668 VESY-GSKGKDSFTESPSVE---------DLTRFHS--------KSPI--SHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 668 ~~~~-~~~~~~~~~~~~~~~---------~~~~~~~--------~sp~--~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~ 727 (771)
...+ .......-....... .+..+.. ..+. ..+.++ +|+||++|+.|+.++..+++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~~~~~~~~l~ 233 (274)
T 2qru_A 155 IAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEVPFRYSKKIG 233 (274)
T ss_dssp GTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSSCTHHHHHHH
T ss_pred HhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCcCHHHHHHHH
Confidence 0000 000000000000000 0000000 0001 123455 89999999999999888777776
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCC---CChHHHHHHHHHHHHHH
Q 004149 728 RALREKGVETKVIVFPNDVHGIERP---QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~i~~wl~~~ 769 (771)
+++ .+++++++++++|++... ....++++.+.+||+++
T Consensus 234 ~~~----~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~~ 274 (274)
T 2qru_A 234 RTI----PESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKER 274 (274)
T ss_dssp HHS----TTCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHTC
T ss_pred HhC----CCcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhhC
Confidence 655 357999999999997532 12235678889998753
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=174.56 Aligned_cols=184 Identities=15% Similarity=0.060 Sum_probs=137.1
Q ss_pred EEEEecCCCCC-CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004149 523 AIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 523 ~~~~~P~~~~~-~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
+.+|.|..... +++.|+||++||++.. ...|...+..|+++||.|+++|+|++. ...|+.
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~~~~ 94 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAG--PSTYAGLLSHWASHGFVVAAAETSNAG-----------------TGREML 94 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCC--GGGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSHHHH
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCC--chhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHHHHH
Confidence 67888874211 2378999999997764 457788889999999999999999631 134555
Q ss_pred HHHHHHHHc---------CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004149 602 TAIDHVIDM---------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 602 ~~i~~l~~~---------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
.+++++.+. ..++.++++|+||||||.+++.++ .+++++++++.+|....
T Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~------------------- 153 (258)
T 2fx5_A 95 ACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG------------------- 153 (258)
T ss_dssp HHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS-------------------
T ss_pred HHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc-------------------
Confidence 566666542 235678999999999999999887 35689999987774310
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.+. ....+.++++|+|+++|++|.++|+.. +..+++. .+.+++++++++++|.+..
T Consensus 154 ---------~~~-----------~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~ 210 (258)
T 2fx5_A 154 ---------LGH-----------DSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERRYVSHFEPV 210 (258)
T ss_dssp ---------TTC-----------CGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEESSCCTTSST
T ss_pred ---------ccc-----------chhhhccCCCCEEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEECCCCCcccc
Confidence 000 012456788999999999999999886 7777665 3467999999999998775
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 004149 752 PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 752 ~~~~~~~~~~i~~wl~~~l 770 (771)
... .++.+.+.+||+++|
T Consensus 211 ~~~-~~~~~~i~~fl~~~l 228 (258)
T 2fx5_A 211 GSG-GAYRGPSTAWFRFQL 228 (258)
T ss_dssp TTC-GGGHHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHHHHh
Confidence 443 377889999999776
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-19 Score=173.02 Aligned_cols=191 Identities=15% Similarity=0.215 Sum_probs=138.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH--HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+|.+++++.+.|. ..++.|+||++||++.. ...|.. .+..|+++||.|+++|+|| +|.+.........
T Consensus 14 ~~g~~l~~~~~~p~---~~~~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~- 84 (210)
T 1imj_A 14 VQGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPI- 84 (210)
T ss_dssp ETTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCT-
T ss_pred eCCeEEEEEEeCCC---CCCCCceEEEECCCCCc--cceeecchhHHHHHHCCCeEEEecCCC---CCCCCCCCCcchh-
Confidence 46888999999886 34567999999997654 335555 4788999999999999999 5544322111111
Q ss_pred ccch--hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 594 SQDV--NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 594 ~~~~--~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
.... +++...++.+ +.++++++|||+||.+++.++.++|++++++++.+|.....
T Consensus 85 ~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~----------------- 141 (210)
T 1imj_A 85 GELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK----------------- 141 (210)
T ss_dssp TSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG-----------------
T ss_pred hhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc-----------------
Confidence 1112 4555555443 34689999999999999999999999999999998874310
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.....+.++++|+|+++|++|. ++++.++.+ +.+ .+.++.++++++|.+..
T Consensus 142 -----------------------~~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~~----~~~~~~~~~~~~H~~~~ 192 (210)
T 1imj_A 142 -----------------------INAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQL----PNHRVLIMKGAGHPCYL 192 (210)
T ss_dssp -----------------------SCHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TTS----SSEEEEEETTCCTTHHH
T ss_pred -----------------------ccchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hhC----CCCCEEEecCCCcchhh
Confidence 0112335678999999999999 987776665 443 35899999999998643
Q ss_pred CCChHHHHHHHHHHHHH
Q 004149 752 PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 752 ~~~~~~~~~~i~~wl~~ 768 (771)
+...++.+.+.+||++
T Consensus 193 -~~~~~~~~~i~~fl~~ 208 (210)
T 1imj_A 193 -DKPEEWHTGLLDFLQG 208 (210)
T ss_dssp -HCHHHHHHHHHHHHHT
T ss_pred -cCHHHHHHHHHHHHHh
Confidence 3345678888889875
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=179.07 Aligned_cols=200 Identities=13% Similarity=0.146 Sum_probs=143.8
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-------HHHHHHHHCCcEEEEECCCCCCCCChhhhhcC----
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL---- 588 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-------~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~---- 588 (771)
.+...++.|.. .+.|+||++||++.. ...|. ..+..|+++||.|+++|+||.+.++.......
T Consensus 49 ~~~~~~~~p~~----~~~~~vvl~HG~g~~--~~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~ 122 (328)
T 1qlw_A 49 QMYVRYQIPQR----AKRYPITLIHGCCLT--GMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 122 (328)
T ss_dssp CEEEEEEEETT----CCSSCEEEECCTTCC--GGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT
T ss_pred eEEEEEEccCC----CCCccEEEEeCCCCC--CCccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCcccccccc
Confidence 35556667752 234679999997754 33455 37888999999999999999554432211000
Q ss_pred ------------------------CC-Ccc---------ccchhh------------------HHHHHHHHHHcCCCCCC
Q 004149 589 ------------------------PG-KVG---------SQDVND------------------VLTAIDHVIDMGLANPS 616 (771)
Q Consensus 589 ------------------------~~-~~~---------~~~~~D------------------~~~~i~~l~~~~~~d~~ 616 (771)
.+ .+. ...+++ +.+++..+.++. +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~ 198 (328)
T 1qlw_A 123 GKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----D 198 (328)
T ss_dssp TSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----T
T ss_pred cccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----C
Confidence 00 000 000122 556666666552 3
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCc
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 696 (771)
+++|+|||+||.+++.++.++|++++++|+.+|... ..+
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~-----------------------------------------~~~ 237 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC-----------------------------------------PKP 237 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC-----------------------------------------CCG
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC-----------------------------------------CCH
Confidence 899999999999999999999999999999987530 001
Q ss_pred cccccCCCCcEEEEeeCCCCccCc-----HHHHHHHHHHHhCCCCEEEEEeCCCC-----ccCCCCCChHHHHHHHHHHH
Q 004149 697 ISHISKVKTPTIFLLGAQDLRVPV-----SNGLQYARALREKGVETKVIVFPNDV-----HGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 697 ~~~~~~i~~P~Lii~G~~D~~vp~-----~~~~~~~~~l~~~g~~~~~~~~~~~~-----H~~~~~~~~~~~~~~i~~wl 766 (771)
......+++|+|+++|++|..+|+ +.++.+++.+++.|.++++++++++| |.+....+..++.+.+.+||
T Consensus 238 ~~~~~~~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl 317 (328)
T 1qlw_A 238 EDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWI 317 (328)
T ss_dssp GGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHH
T ss_pred HHHhhccCCCEEEEeccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHH
Confidence 111223568999999999999997 99999999999988899999999665 98876665678999999999
Q ss_pred HHHh
Q 004149 767 KKYC 770 (771)
Q Consensus 767 ~~~l 770 (771)
++++
T Consensus 318 ~~~~ 321 (328)
T 1qlw_A 318 GRNT 321 (328)
T ss_dssp HHTC
T ss_pred Hhcc
Confidence 9875
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=168.48 Aligned_cols=222 Identities=12% Similarity=0.129 Sum_probs=142.5
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|.++.+.... +.|+||++||++.. ...|...+..|+ .||.|+++|+||.+ .+...
T Consensus 7 ~~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G~G---~S~~~------ 66 (262)
T 3r0v_A 7 VPSSDGTPIAFERSG--------SGPPVVLVGGALST--RAGGAPLAERLA-PHFTVICYDRRGRG---DSGDT------ 66 (262)
T ss_dssp EECTTSCEEEEEEEE--------CSSEEEEECCTTCC--GGGGHHHHHHHT-TTSEEEEECCTTST---TCCCC------
T ss_pred EEcCCCcEEEEEEcC--------CCCcEEEECCCCcC--hHHHHHHHHHHh-cCcEEEEEecCCCc---CCCCC------
Confidence 344567788765543 14789999997765 346777888887 89999999999954 33211
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcch--hhhh
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--YVES 670 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~ 670 (771)
.....+++.+.+..+++.. + +++.|+|||+||.+++.++.++| +++++|+.+|............ ..+. ....
T Consensus 67 ~~~~~~~~~~~~~~~~~~l--~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~-~~~~~~~~~~ 141 (262)
T 3r0v_A 67 PPYAVEREIEDLAAIIDAA--G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVP-PDYQTRLDAL 141 (262)
T ss_dssp SSCCHHHHHHHHHHHHHHT--T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCC-TTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc--C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhh-hHHHHHHHHH
Confidence 1234566666555555552 4 78999999999999999999999 9999999998654321110000 0000 0000
Q ss_pred ccC--------CCCCcCCCCCChhhHHHHh------------------------hcCccccccCCCCcEEEEeeCCCCcc
Q 004149 671 YGS--------KGKDSFTESPSVEDLTRFH------------------------SKSPISHISKVKTPTIFLLGAQDLRV 718 (771)
Q Consensus 671 ~~~--------~~~~~~~~~~~~~~~~~~~------------------------~~sp~~~~~~i~~P~Lii~G~~D~~v 718 (771)
... ......... ..+....+. ...+...+.++++|+|+++|++|..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 220 (262)
T 3r0v_A 142 LAEGRRGDAVTYFMTEGVGV-PPDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAW 220 (262)
T ss_dssp HHTTCHHHHHHHHHHHTSCC-CHHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECTTCCHH
T ss_pred hhccchhhHHHHHhhcccCC-CHHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeecCCCCC
Confidence 000 000000000 001111110 11234557788999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 719 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 719 p~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
|++.+..+.+.+.+ +++++++++||. +...++.+.+.+||++
T Consensus 221 ~~~~~~~~~~~~~~----~~~~~~~~~gH~----~~p~~~~~~i~~fl~~ 262 (262)
T 3r0v_A 221 IRHTAQELADTIPN----ARYVTLENQTHT----VAPDAIAPVLVEFFTR 262 (262)
T ss_dssp HHHHHHHHHHHSTT----EEEEECCCSSSS----CCHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHhCCC----CeEEEecCCCcc----cCHHHHHHHHHHHHhC
Confidence 99888888877643 799999999993 3456788888888853
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=175.12 Aligned_cols=230 Identities=17% Similarity=0.187 Sum_probs=135.3
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|..+++..+- ..|.||++||.+.+ ...|...+..|+++||.|+++|+||. |.+... ..
T Consensus 4 ~~~~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~---G~S~~~-----~~ 65 (271)
T 3ia2_A 4 VAKDGTQIYFKDWG--------SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRGF---GRSDQP-----WT 65 (271)
T ss_dssp ECTTSCEEEEEEES--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTS---TTSCCC-----SS
T ss_pred EcCCCCEEEEEccC--------CCCeEEEECCCCCc--HHHHHHHHHHHHhCCceEEEecCCCC---ccCCCC-----CC
Confidence 34567777655442 23568999997655 45788888999999999999999994 443211 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh-CCCceeEEEecCCccchhhhhc--CCCCCc-c----
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVG--TTDIPD-W---- 665 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~--~~~~~~-~---- 665 (771)
....+++.+.+..+++. ++.+++.|+||||||.+++.++++ .|++++++|+.++......... ....+. .
T Consensus 66 ~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (271)
T 3ia2_A 66 GNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFARF 143 (271)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHHHHH
Confidence 12333443333333333 235789999999999877666555 4899999999876432110000 000000 0
Q ss_pred ---------hhhhhccCCCCCcC-CCCCChhh-------------------HHHHhhcCccccccCCCCcEEEEeeCCCC
Q 004149 666 ---------CYVESYGSKGKDSF-TESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 666 ---------~~~~~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~ 716 (771)
.+...+........ ........ ...+...+....+.++++|+|+++|++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~ 223 (271)
T 3ia2_A 144 KTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQ 223 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSCEEEEEETTCS
T ss_pred HHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCCEEEEEeCCCC
Confidence 00000000000000 00000000 00111122233467899999999999999
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
++|++.+.+++..+. ...++.+++++||.+.. +...++.+.+.+||+
T Consensus 224 ~~p~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 224 IVPFETTGKVAAELI---KGAELKVYKDAPHGFAV-THAQQLNEDLLAFLK 270 (271)
T ss_dssp SSCGGGTHHHHHHHS---TTCEEEEETTCCTTHHH-HTHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHhC---CCceEEEEcCCCCcccc-cCHHHHHHHHHHHhh
Confidence 999988555544432 24799999999998763 445678888888885
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=171.61 Aligned_cols=218 Identities=17% Similarity=0.216 Sum_probs=134.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|+++||.|+++|+||. |.+........ .....+|+.++++++.+.+ .+
T Consensus 16 ~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~Gh---G~s~~~~~~~~-~~~~~~d~~~~~~~l~~~~---~~ 86 (247)
T 1tqh_A 16 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGH---GVPPEELVHTG-PDDWWQDVMNGYEFLKNKG---YE 86 (247)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTTS---SSCHHHHTTCC-HHHHHHHHHHHHHHHHHHT---CC
T ss_pred CcEEEEECCCCCC--hHHHHHHHHHHHHCCCEEEecccCCC---CCCHHHhcCCC-HHHHHHHHHHHHHHHHHcC---CC
Confidence 3679999997654 44677788899999999999999994 43321111111 1112456666667776553 36
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch---hhhhc-CCCCCcchhhhhccCC------CCCcCCCCC--C
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL---ALMVG-TTDIPDWCYVESYGSK------GKDSFTESP--S 684 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~---~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~--~ 684 (771)
++.|+||||||.+++.++.++| ++++|+.++.... ..... ...... .+....... ....+...+ .
T Consensus 87 ~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (247)
T 1tqh_A 87 KIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAR-EYKKREGKSEEQIEQEMEKFKQTPMKT 163 (247)
T ss_dssp CEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHH-HHHHHHTCCHHHHHHHHHHHTTSCCTT
T ss_pred eEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHH-HhhcccccchHHHHhhhhcccCCCHHH
Confidence 8999999999999999999988 7777765432210 00000 000000 000000000 000000000 0
Q ss_pred hhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004149 685 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 685 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
......+. .+....+.++++|+|+++|++|..+|++.++.+++.+.. ..+++++++++||.....+...++.+.+.+
T Consensus 164 ~~~~~~~~-~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~~~~~~~~~i~~ 240 (247)
T 1tqh_A 164 LKALQELI-ADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDIYA 240 (247)
T ss_dssp HHHHHHHH-HHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcCC--CceEEEEeCCCceeeccCccHHHHHHHHHH
Confidence 01111110 122345778999999999999999999999888877653 247999999999987755555688899999
Q ss_pred HHHHH
Q 004149 765 WFKKY 769 (771)
Q Consensus 765 wl~~~ 769 (771)
||++.
T Consensus 241 Fl~~~ 245 (247)
T 1tqh_A 241 FLESL 245 (247)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 99863
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=195.63 Aligned_cols=233 Identities=16% Similarity=0.105 Sum_probs=160.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.+...++||||++|||++..+ +..++|.+ ++++.++++... ..+ ..+.|||| +|+|.+....
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~-g~~~lw~~-~~g~~~~lt~~~~~~~----------~~~~~spd--~~l~~~~~~~--- 85 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSE-GSVNAYLY-DGGETVKLNREPINSV----------LDPHYGVG--RVILVRDVSK--- 85 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEET-TEEEEEEE-ETTEEEECCSSCCSEE----------CEECTTCS--EEEEEEECST---
T ss_pred chheeecCCCCCeEEEEEccC-CceeEEEE-cCCCcEeeeccccccc----------ccccCCCC--eEEEEeccCC---
Confidence 377899999999999998754 55567765 566666665443 122 58999999 6888765311
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc--cCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~--~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+.....||.+++ .++.. .+ +... .....+|||||+.
T Consensus 86 -----------------------------------g~~~~~l~~~~~~~~g~~~-~l--~~~~-~~~~~~~s~dg~~--- 123 (582)
T 3o4h_A 86 -----------------------------------GAEQHALFKVNTSRPGEEQ-RL--EAVK-PMRILSGVDTGEA--- 123 (582)
T ss_dssp -----------------------------------TSCCEEEEEEETTSTTCCE-EC--TTSC-SBEEEEEEECSSC---
T ss_pred -----------------------------------CCcceEEEEEeccCCCccc-cc--cCCC-CceeeeeCCCCCe---
Confidence 012357999998 65554 55 2222 2346799999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++|++...+ .++++|+ ++++.++++.... .+++|||||++|+|.+.
T Consensus 124 -~~~~s~~~~--------------~~~l~d~-----------------~~g~~~~l~~~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 124 -VVFTGATED--------------RVALYAL-----------------DGGGLRELARLPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp -EEEEEECSS--------------CEEEEEE-----------------ETTEEEEEEEESS--CEEEEEEETTEEEEEEE
T ss_pred -EEEEecCCC--------------CceEEEc-----------------cCCcEEEeecCCC--ceEEECCCCCEEEEEEE
Confidence 999873221 3446687 6778888876544 78999999999999987
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+. .....||++|+.+++.+.++.... ....++|||||+.|+ .+..++...||
T Consensus 170 ~~-------~~~~~i~~~d~~~g~~~~l~~~~~--------------------~~~~~~~SpDG~~l~-~~~~~~~~~i~ 221 (582)
T 3o4h_A 170 FG-------GGRVSLFTSNLSSGGLRVFDSGEG--------------------SFSSASISPGMKVTA-GLETAREARLV 221 (582)
T ss_dssp EE-------TTEEEEEEEETTTCCCEEECCSSC--------------------EEEEEEECTTSCEEE-EEECSSCEEEE
T ss_pred cC-------CCCeEEEEEcCCCCCceEeecCCC--------------------ccccceECCCCCEEE-EccCCCeeEEE
Confidence 64 123569999999888765543321 124678999999887 55566667899
Q ss_pred EEECCCCcEEEecCCCCCceeeE--------EeecCCEEEEEEeCC
Q 004149 417 SVNVSSGELLRITPAESNFSWSL--------LTLDGDNIIAVSSSP 454 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~--------~s~d~~~l~~~~s~~ 454 (771)
++|+++++.+.++.....+..+. |+||| .++++.+..
T Consensus 222 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~ 266 (582)
T 3o4h_A 222 TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARRE 266 (582)
T ss_dssp EECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEET
T ss_pred EEcCCCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcC
Confidence 99999999883333333333345 99999 666666543
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=175.26 Aligned_cols=218 Identities=15% Similarity=0.211 Sum_probs=140.1
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+... ......++++.+.+..+.+.. +.
T Consensus 14 ~~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~----~~~~~~~~~~a~dl~~~l~~l--~~ 81 (268)
T 3v48_A 14 DAPVVVLISGLGGS--GSYWLPQLAVLEQ-EYQVVCYDQRG---TGNNPDT----LAEDYSIAQMAAELHQALVAA--GI 81 (268)
T ss_dssp TCCEEEEECCTTCC--GGGGHHHHHHHHT-TSEEEECCCTT---BTTBCCC----CCTTCCHHHHHHHHHHHHHHT--TC
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHHHhh-cCeEEEECCCC---CCCCCCC----ccccCCHHHHHHHHHHHHHHc--CC
Confidence 46889999997665 4578888888855 79999999999 5544211 111234666666666666552 34
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-----------CCCCCcch-------hhhhccCCCC-
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TTDIPDWC-------YVESYGSKGK- 676 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~- 676 (771)
+++.|+||||||.+++.++.++|++++++|+.++......... ......+. +...+.....
T Consensus 82 ~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
T 3v48_A 82 EHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAP 161 (268)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTHH
T ss_pred CCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcccc
Confidence 6899999999999999999999999999999887543210000 00000000 0000000000
Q ss_pred -------CcCCCCCChhh----HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 677 -------DSFTESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 677 -------~~~~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
........... ...+...+....+.++++|+|+++|++|..+|++.++.+.+.+.. .++++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~p~----~~~~~~~~~ 237 (268)
T 3v48_A 162 RLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPD----SQKMVMPYG 237 (268)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHCSS----EEEEEESSC
T ss_pred cchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhCCc----CeEEEeCCC
Confidence 00000000000 111122233345778999999999999999999988888877654 789999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHHHh
Q 004149 746 VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
||... .+....+.+.|.+||.+.+
T Consensus 238 GH~~~-~e~p~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 238 GHACN-VTDPETFNALLLNGLASLL 261 (268)
T ss_dssp CTTHH-HHCHHHHHHHHHHHHHHHH
T ss_pred Ccchh-hcCHHHHHHHHHHHHHHhc
Confidence 99765 4455688899999998754
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=173.03 Aligned_cols=231 Identities=13% Similarity=0.132 Sum_probs=139.6
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH-HHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~-~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+|.++++..+-++ ..|.||++||.+.. ...|... +..|+++||.|+++|+||. |.+.... + ....
T Consensus 8 ~~g~~l~y~~~G~~------~~~~vvllHG~~~~--~~~w~~~~~~~L~~~G~~vi~~D~rG~---G~S~~~~-~-~~~~ 74 (298)
T 1q0r_A 8 SGDVELWSDDFGDP------ADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRDT---GRSTTRD-F-AAHP 74 (298)
T ss_dssp ETTEEEEEEEESCT------TSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTTS---TTSCCCC-T-TTSC
T ss_pred cCCeEEEEEeccCC------CCCeEEEEcCCCCC--ccchHHHHHHHHHhCCCEEEeeCCCCC---CCCCCCC-C-CcCC
Confidence 35777776655432 24689999997655 3467664 4889999999999999994 4432100 0 0112
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc-ch-hhh------h------cCC
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NL-ALM------V------GTT 660 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~-~~~------~------~~~ 660 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++.. .. ... . ...
T Consensus 75 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
T 1q0r_A 75 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLP 152 (298)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSC
T ss_pred cCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCcccccchhhhhhhhhhhcccc
Confidence 2345555444444444 245689999999999999999999999999999988754 21 000 0 000
Q ss_pred CCC-cc--hhhhhc-cCCC--------C---CcC--CCC-CChhhH-------------------HHHh---hcCcccc-
Q 004149 661 DIP-DW--CYVESY-GSKG--------K---DSF--TES-PSVEDL-------------------TRFH---SKSPISH- 699 (771)
Q Consensus 661 ~~~-~~--~~~~~~-~~~~--------~---~~~--~~~-~~~~~~-------------------~~~~---~~sp~~~- 699 (771)
... .. .+.... .... . ..+ ... ...+.. ..+. ..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (298)
T 1q0r_A 153 GPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAE 232 (298)
T ss_dssp CCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGG
T ss_pred cccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchhhhhhhhhcCccccccc
Confidence 000 00 000000 0000 0 000 000 000000 0000 0011234
Q ss_pred ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 700 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 700 ~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+.++++|+|+++|++|..+|++.++.+.+.+. ..++++++++||. ...++.+.+.+||.+++
T Consensus 233 l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gHe-----~p~~~~~~i~~fl~~~~ 294 (298)
T 1q0r_A 233 LREVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHA-----LPSSVHGPLAEVILAHT 294 (298)
T ss_dssp GGGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSS-----CCGGGHHHHHHHHHHHH
T ss_pred ccccCCCEEEEEeCCCccCCHHHHHHHHHhCC----CCEEEEcCCCCCC-----CcHHHHHHHHHHHHHHh
Confidence 67889999999999999999988887776654 3799999999992 22467889999998764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6e-18 Score=195.80 Aligned_cols=272 Identities=14% Similarity=0.114 Sum_probs=175.8
Q ss_pred ccceEEEeCCCCCeEEEEecC--CCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeec--CCCCe-EEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN--SDETL-IAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wS--pDg~~-la~~~~~ 173 (771)
..+..|+|||| .++|++.+ .++...+|.+..++..++++.....+...+...+ -..+.|| |||++ |+|.+..
T Consensus 24 ~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYS-GFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTC-CCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccC-CccceeeeecCCCeEEEEEECC
Confidence 45788999965 68888763 3344456655445555555443322211111100 0144565 99999 9997432
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc--C-CceeeccCCC---CCCccceEEE
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--S-GEVQAVKGIP---KSLSVGQVVW 247 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~-~~~~~l~~~~---~~~~~~~~~w 247 (771)
...||++++. + ++.+.++..+ .......++|
T Consensus 101 -------------------------------------------~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 101 -------------------------------------------DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp -------------------------------------------TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE
T ss_pred -------------------------------------------CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE
Confidence 2579999998 5 8888884221 3446778999
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC------CcceecC-CCCcccc
Q 004149 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED------LPVVNLT-ESISSAF 320 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~lt-~~~~~~~ 320 (771)
||||+. |+|++....... ......+||++|+ ++ ++.++|+ .+...+.
T Consensus 138 spDg~~----l~~~~~~~~~~~-----~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~ 191 (662)
T 3azo_A 138 LPERGE----VWCMAEEFTGEG-----PSDVRRFLAAVPL-----------------DGSAAADRSAVRELSDDAHRFVT 191 (662)
T ss_dssp ETTTTE----EEEEEEEECSSS-----TTCEEEEEEEEET-----------------TSTTTTCGGGSEESSCSCSSEEC
T ss_pred CCCCCE----EEEEEecccCCC-----CCCceeEEEEEEC-----------------CCCccccCCceeEEEecCCCccc
Confidence 999999 999885321000 0012248999998 66 7788888 7677788
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecC-CC---CCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP-TN---GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~-~~---~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
.|+|||||++|+|.+.+.. +......+|+++|+. ++ +.++++... ......+.|
T Consensus 192 ~~~~SpDG~~la~~~~~~~---~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-------------------~~~~~~~~~ 249 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHP---RMPWEGTELKTARVTEDGRFADTRTLLGGP-------------------EEAIAQAEW 249 (662)
T ss_dssp CCEECTTSSEEEEEEECTT---CCTTTCEEEEEEEECTTSCEEEEEEEEEET-------------------TBCEEEEEE
T ss_pred CceECCCCCEEEEEECCCC---CCCCCCcEEEEEEECCCCcccccEEeCCCC-------------------CceEcceEE
Confidence 9999999999999987642 111234679999998 45 222222110 012346789
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc---------eeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 397 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF---------SWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 397 s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~---------~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
||||+ |+|+++.++..+||.+++++++.++++...... ....++++++ ++++.+. .-.+|+++++.+
T Consensus 250 spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~d~~~ 325 (662)
T 3azo_A 250 APDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK--GAAVLGILDPES 325 (662)
T ss_dssp CTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS--SSCEEEEEETTT
T ss_pred CCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc--CccEEEEEECCC
Confidence 99999 888887777779999999999999888654322 2234555555 5666655 556788887654
Q ss_pred c
Q 004149 468 K 468 (771)
Q Consensus 468 ~ 468 (771)
+
T Consensus 326 ~ 326 (662)
T 3azo_A 326 G 326 (662)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-17 Score=167.23 Aligned_cols=249 Identities=14% Similarity=0.154 Sum_probs=167.6
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCC
Q 004149 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 124 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 124 (771)
.....+|||++|++.. ...++++++... ++..++.... ....+..++|||||++|++.....++..
T Consensus 45 ~~~~~spdg~~l~~~~----------~~~i~~~d~~~~-~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 45 EAPNWSPDGKYLLLNS----------EGLLYRLSLAGD-PSPEKVDTGF---ATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEECTTSSEEEEEE----------TTEEEEEESSSC-CSCEECCCTT---CCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred EeeEECCCCCEEEEEc----------CCeEEEEeCCCC-CCceEecccc---ccccccceEECCCCCEEEEEEeCCCCcc
Confidence 3445688999999863 136788777441 2344333221 1134567999999999999886554667
Q ss_pred eEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004149 125 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
.+|.+. .++....+... ... ..+.|||||++|+|.+...
T Consensus 111 ~l~~~~~~~~~~~~~~~~-~~~----------~~~~~spdg~~l~~~~~~~----------------------------- 150 (297)
T 2ojh_A 111 AIYLLPSTGGTPRLMTKN-LPS----------YWHGWSPDGKSFTYCGIRD----------------------------- 150 (297)
T ss_dssp EEEEEETTCCCCEECCSS-SSE----------EEEEECTTSSEEEEEEEET-----------------------------
T ss_pred eEEEEECCCCceEEeecC-CCc----------cceEECCCCCEEEEEECCC-----------------------------
Confidence 888887 44443333222 112 4789999999999875432
Q ss_pred ccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004149 204 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
....||.+++.+++.+.+ ......+..+.|+|||+. |++.+.. +....||
T Consensus 151 ------------~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~~------------~~~~~i~ 200 (297)
T 2ojh_A 151 ------------QVFDIYSMDIDSGVETRL--THGEGRNDGPDYSPDGRW----IYFNSSR------------TGQMQIW 200 (297)
T ss_dssp ------------TEEEEEEEETTTCCEEEC--CCSSSCEEEEEECTTSSE----EEEEECT------------TSSCEEE
T ss_pred ------------CceEEEEEECCCCcceEc--ccCCCccccceECCCCCE----EEEEecC------------CCCccEE
Confidence 225788888888888888 555556788999999998 8887632 2334789
Q ss_pred EEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 284 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.+++ .++..+.++.....+..+.|||||++|++.+.+.............|+++|+.+++.+.
T Consensus 201 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 201 RVRV-----------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET 263 (297)
T ss_dssp EEET-----------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred EECC-----------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence 9987 66777888877777889999999999999987642100000134679999998876533
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+.... . ....+..++|+|||+.|++.+...+
T Consensus 264 ~~~~~-------~----------~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 264 LFDLF-------G----------GQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEEEE-------E----------STTTSCSCCBCTTSSEEEEEEECCC
T ss_pred eeccC-------C----------CCcccccceECCCCCEEEEEEeccC
Confidence 32110 0 0113567899999999988876543
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=172.97 Aligned_cols=213 Identities=18% Similarity=0.280 Sum_probs=131.6
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... .....+++.+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~~-----~~~~~~~~a~dl~~~l~~--l~~~~ 91 (277)
T 1brt_A 24 QPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQPT-----TGYDYDTFAADLNTVLET--LDLQD 91 (277)
T ss_dssp SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCCS-----SCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CeEEEECCCCCc--HHHHHHHHHHHhhCCCEEEEeCCCC---CCCCCCCC-----CCccHHHHHHHHHHHHHH--hCCCc
Confidence 459999997765 4578888999999999999999999 44442111 112334443333333332 13468
Q ss_pred EEEEEcChhHHHHHHHHHhCCC-ceeEEEecCCccchhhhh-cCCC--CC-cc-------------hhhhhccCCCCCc-
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMV-GTTD--IP-DW-------------CYVESYGSKGKDS- 678 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~~-~~~~--~~-~~-------------~~~~~~~~~~~~~- 678 (771)
+.|+||||||.+++.++.++|+ +++++|+.++........ .... .+ .. .....+.......
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (277)
T 1brt_A 92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLD 171 (277)
T ss_dssp EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHH
T ss_pred eEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 9999999999999999999998 999999998743211000 0000 00 00 0000000000000
Q ss_pred --CCCCCChhhHHHH----------------h--hcCccccccCCCCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCCCE
Q 004149 679 --FTESPSVEDLTRF----------------H--SKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVET 737 (771)
Q Consensus 679 --~~~~~~~~~~~~~----------------~--~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~-~~~~~~l~~~g~~~ 737 (771)
.......+....+ . ..+....+.++++|+|+++|++|..+|++.+ +.+.+.+.. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~----~ 247 (277)
T 1brt_A 172 ENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPS----A 247 (277)
T ss_dssp HHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHHCTT----S
T ss_pred ccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCCeEEEecCCCccCChHHHHHHHHHHCCC----C
Confidence 0000011111100 0 1122335678899999999999999999887 777766643 6
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 738 KVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
++++++++||.... +...++.+.+.+||+
T Consensus 248 ~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 248 EYVEVEGAPHGLLW-THAEEVNTALLAFLA 276 (277)
T ss_dssp EEEEETTCCTTHHH-HTHHHHHHHHHHHHH
T ss_pred cEEEeCCCCcchhh-hCHHHHHHHHHHHHh
Confidence 89999999998653 345678888999986
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=176.93 Aligned_cols=247 Identities=12% Similarity=0.142 Sum_probs=152.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----------cchHHHH---HHHHCCcEEEEECCCC--CCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSLA---FLSSVGYSLLIVNYRG--SLGF 580 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----------~~~~~~~---~la~~G~~V~~~d~rG--~~~~ 580 (771)
+|..+++..+.+. ...+.|+||++||.+...... .|...+. .|.+.||.|+++|+|| .+..
T Consensus 29 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s 105 (366)
T 2pl5_A 29 SPVVIAYETYGTL---SSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSS 105 (366)
T ss_dssp SSEEEEEEEEECC---CTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred cCceeeEEeccCc---CCCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCC
Confidence 4667776666554 223458999999977654310 3444442 3557899999999999 3433
Q ss_pred ChhhhhcCC-CC----ccccchhhHHHHHHHHHHcCCCCCCeE-EEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh
Q 004149 581 GEEALQSLP-GK----VGSQDVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 581 g~~~~~~~~-~~----~~~~~~~D~~~~i~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 654 (771)
+........ .. .....++++.+.+..+++. ++.+++ .|+||||||.+++.++.++|++++++|+.+|.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 183 (366)
T 2pl5_A 106 GPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHS 183 (366)
T ss_dssp STTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCC
T ss_pred CCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCccCC
Confidence 221100000 00 0123566777666666665 345788 799999999999999999999999999999875431
Q ss_pred hhh---------cCCCCCcc-----------------------------hhhhhccCCC-----------CCc-------
Q 004149 655 LMV---------GTTDIPDW-----------------------------CYVESYGSKG-----------KDS------- 678 (771)
Q Consensus 655 ~~~---------~~~~~~~~-----------------------------~~~~~~~~~~-----------~~~------- 678 (771)
... .....+.| .+...+.... ...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
T 2pl5_A 184 AMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGE 263 (366)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTC
T ss_pred CccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHHHH
Confidence 100 00000000 0000000000 000
Q ss_pred -CCCCCChhhH----HHHhhcC------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe-CCCC
Q 004149 679 -FTESPSVEDL----TRFHSKS------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDV 746 (771)
Q Consensus 679 -~~~~~~~~~~----~~~~~~s------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-~~~~ 746 (771)
+......... ..+...+ ....+.++++|+|+++|++|.++|++.++.+++.+...+.+++++++ +++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 343 (366)
T 2pl5_A 264 SFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEG 343 (366)
T ss_dssp CSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBS
T ss_pred hhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEeCCCCC
Confidence 0000011111 1111111 12257889999999999999999999999999999976666899999 8999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHH
Q 004149 747 HGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
|.+.... ..++.+.+.+||+++
T Consensus 344 H~~~~e~-p~~~~~~i~~fl~~~ 365 (366)
T 2pl5_A 344 HDSFLLK-NPKQIEILKGFLENP 365 (366)
T ss_dssp SGGGGSC-CHHHHHHHHHHHHCC
T ss_pred cchhhcC-hhHHHHHHHHHHccC
Confidence 9877544 458889999999764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=202.13 Aligned_cols=326 Identities=9% Similarity=0.035 Sum_probs=200.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC--CCC
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE--NES 123 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~--~~~ 123 (771)
.|..| |++|+|... ..||++++ .+++.++|+..+ ..+..++|||||++|||.+... ++.
T Consensus 19 ~~~~S--~~~iaf~~~----------~~l~~~~~--~gg~~~~lt~~~-----~~v~~~~~SPDG~~la~~s~~~~~~~~ 79 (1045)
T 1k32_A 19 NPDIH--GDRIIFVCC----------DDLWEHDL--KSGSTRKIVSNL-----GVINNARFFPDGRKIAIRVMRGSSLNT 79 (1045)
T ss_dssp EEEEE--TTEEEEEET----------TEEEEEET--TTCCEEEEECSS-----SEEEEEEECTTSSEEEEEEEESTTCCE
T ss_pred CcEEe--CCEEEEEEC----------CcEEEEEC--CCCcEEEeeeCC-----CcccCeEECCCCCEEEEEEeeccCCCC
Confidence 34444 358999863 37888776 445677887654 5688999999999999998762 244
Q ss_pred CeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC---CCc--cCCCCC-----CCCCC
Q 004149 124 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK---PTF--SLGSTK-----GGSSD 192 (771)
Q Consensus 124 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~---~~~--~~~~~~-----~~~~~ 192 (771)
.++++++ .++..++++.......+.. .....++|||||+ |+|.+....... ..| ...... .....
T Consensus 80 ~~i~~~d~~~g~~~~lt~~~~~~~~~~---~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~ 155 (1045)
T 1k32_A 80 ADLYFYNGENGEIKRITYFSGKSTGRR---MFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT 155 (1045)
T ss_dssp EEEEEEETTTTEEEECCCCCEEEETTE---ECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS
T ss_pred CeEEEEECCCCCeEEcccCCCcccccc---cccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcc
Confidence 5677777 5555554443222110000 0014789999998 777765321100 000 000000 00000
Q ss_pred ---------------ccCCCC-----------------------------------------------------------
Q 004149 193 ---------------KDCNSW----------------------------------------------------------- 198 (771)
Q Consensus 193 ---------------~~~~~~----------------------------------------------------------- 198 (771)
.....|
T Consensus 156 ~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g 235 (1045)
T 1k32_A 156 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG 235 (1045)
T ss_dssp EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS
T ss_pred eeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCC
Confidence 000000
Q ss_pred -----------CCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC---------CCCccceEEEe-cCCCCCccE
Q 004149 199 -----------KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---------KSLSVGQVVWA-PLNEGLHQY 257 (771)
Q Consensus 199 -----------~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~---------~~~~~~~~~ws-pDg~~~~~~ 257 (771)
.....|++|. ..++......|++||+.++++..+.+.. ....+..++|| |||+.
T Consensus 236 ~~~~~l~~~~~~~~~~~SpDG-~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~---- 310 (1045)
T 1k32_A 236 KDLRKHTSFTDYYPRHLNTDG-RRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL---- 310 (1045)
T ss_dssp CSCEECCCCCSSCEEEEEESS-SCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC----
T ss_pred CcceEecCCCCcceeeEcCCC-CEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCE----
Confidence 0011233332 2122223456677776555555442100 01146789999 99999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc-cccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-~~~~p~~SpDG~~l~f~~~ 336 (771)
|+|.+ ...|+.+++ .+++.++++.+.. .+..+.|| ||+.|+|.+.
T Consensus 311 la~~~----------------~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~ 356 (1045)
T 1k32_A 311 IAFVS----------------RGQAFIQDV-----------------SGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR 356 (1045)
T ss_dssp EEEEE----------------TTEEEEECT-----------------TSSBEEECSCCSCEEEEEECSS-SEEEEEEEET
T ss_pred EEEEE----------------cCEEEEEcC-----------------CCCceEEccCCCcceEEeeeEc-CCCeEEEEEC
Confidence 99986 127999998 6777777877777 78899999 9999999886
Q ss_pred CCCCCCCCccccccce-eeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 337 KSSVDSGAHSATDSLH-RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
+ .+|| ++++.++..+.++... ..+..++|||||+.|++... ...|
T Consensus 357 ~-----------~~l~~~~d~~~~~~~~l~~~~--------------------~~~~~~~~SpDG~~la~~~~---~~~v 402 (1045)
T 1k32_A 357 E-----------GDFLGIYDYRTGKAEKFEENL--------------------GNVFAMGVDRNGKFAVVAND---RFEI 402 (1045)
T ss_dssp T-----------EEEEEEEETTTCCEEECCCCC--------------------CSEEEEEECTTSSEEEEEET---TSEE
T ss_pred C-----------CceEEEEECCCCCceEecCCc--------------------cceeeeEECCCCCEEEEECC---CCeE
Confidence 2 3689 9998876654433110 12346789999998887653 2378
Q ss_pred EEEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEEeCC------CCCCeEEEEEecc
Q 004149 416 ISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSP------VDVPQVKYGYFVD 467 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~-~~~~~~~~~~s~d~~~l~~~~s~~------~~p~~l~~~~~~~ 467 (771)
+.+|+.+|+.+.+.. ....+....|||||++|++..... ..+..|++.++.+
T Consensus 403 ~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 403 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 899999999988873 333446678999999998887654 4456788887654
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-18 Score=171.84 Aligned_cols=226 Identities=20% Similarity=0.265 Sum_probs=135.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+.+|..+++... + ..|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.. + ...
T Consensus 13 ~~~g~~l~y~~~------G--~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~---~--~~~ 74 (281)
T 3fob_A 13 NQAPIEIYYEDH------G--TGKPVVLIHGWPLS--GRSWEYQVPALVEAGYRVITYDRRG---FGKSSQ---P--WEG 74 (281)
T ss_dssp TTEEEEEEEEEE------S--SSEEEEEECCTTCC--GGGGTTTHHHHHHTTEEEEEECCTT---STTSCC---C--SSC
T ss_pred CCCceEEEEEEC------C--CCCeEEEECCCCCc--HHHHHHHHHHHHhCCCEEEEeCCCC---CCCCCC---C--ccc
Confidence 445666654432 1 23678999997765 4467778888999999999999999 444421 1 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh-CCCceeEEEecCCccchhhhh-cC-CCCCc-c-----
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMV-GT-TDIPD-W----- 665 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~-~~-~~~~~-~----- 665 (771)
...+++.+.+..+++. ++.+++.|+||||||.+++.+++. +|++++++|+.++........ .. ..... .
T Consensus 75 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (281)
T 3fob_A 75 YEYDTFTSDLHQLLEQ--LELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIETF 152 (281)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH--cCCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHHH
Confidence 3345555555555554 245689999999999987776655 589999999887642110000 00 00000 0
Q ss_pred ---------hhh----hhccCCCCCcCCCCCChhh-------------------HHHHhhcCccccccCCCCcEEEEeeC
Q 004149 666 ---------CYV----ESYGSKGKDSFTESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGA 713 (771)
Q Consensus 666 ---------~~~----~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~ 713 (771)
.+. ..+..... ......... ...+...+....+.++++|+|+++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~ 230 (281)
T 3fob_A 153 KSGVINDRLAFLDEFTKGFFAAGD--RTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGD 230 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCBTT--BCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEET
T ss_pred HHHhhhhHHHHHHHHHHHhccccc--ccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEEEEecC
Confidence 000 00000000 000000000 01111223334578899999999999
Q ss_pred CCCccCcHHH-HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 714 QDLRVPVSNG-LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 714 ~D~~vp~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+|.++|++.+ +.+.+.+. +.++++++++||.+. .+...++.+.+.+||+
T Consensus 231 ~D~~~p~~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 231 SDATVPFEYSGKLTHEAIP----NSKVALIKGGPHGLN-ATHAKEFNEALLLFLK 280 (281)
T ss_dssp TCSSSCGGGTHHHHHHHST----TCEEEEETTCCTTHH-HHTHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHhCC----CceEEEeCCCCCchh-hhhHHHHHHHHHHHhh
Confidence 9999999876 44434443 479999999999865 3445578888888875
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=168.49 Aligned_cols=230 Identities=16% Similarity=0.188 Sum_probs=136.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|..+++..+.|+ ..|+||++||.+.+ ...|...+..|+++||.|+++|+||. |.+... ...
T Consensus 6 ~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~D~~G~---G~S~~~-----~~~ 69 (276)
T 1zoi_A 6 TKDGVQIFYKDWGPR------DAPVIHFHHGWPLS--ADDWDAQLLFFLAHGYRVVAHDRRGH---GRSSQV-----WDG 69 (276)
T ss_dssp CTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC-----SSC
T ss_pred CCCCcEEEEEecCCC------CCCeEEEECCCCcc--hhHHHHHHHHHHhCCCEEEEecCCCC---CCCCCC-----CCC
Confidence 345777776655432 23689999997655 45788888999999999999999994 444211 111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchhhhhcCC--CCCcch-----
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT--DIPDWC----- 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~~--~~~~~~----- 666 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++........... ..+...
T Consensus 70 ~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (276)
T 1zoi_A 70 HDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQ 147 (276)
T ss_dssp CSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCccccccccccccccHHHHHHHH
Confidence 2334433333333332 1346799999999999999988777 99999999988643210000000 000000
Q ss_pred ---------hhhhccC-CCC--CcCCCCCChhhHHH-------------------HhhcCccccccCCCCcEEEEeeCCC
Q 004149 667 ---------YVESYGS-KGK--DSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 667 ---------~~~~~~~-~~~--~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
+...+.. ... .............. +...+....+.++++|+|+++|++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D 227 (276)
T 1zoi_A 148 AQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDD 227 (276)
T ss_dssp HHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccccCCCEEEEEcCCC
Confidence 0000000 000 00000001111110 1111222346678999999999999
Q ss_pred CccCcHHHHH-HHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 716 LRVPVSNGLQ-YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 716 ~~vp~~~~~~-~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+|++...+ +.+.+. +.++++++++||.+.. +...++.+.+.+||+
T Consensus 228 ~~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 228 QIVPYENSGVLSAKLLP----NGALKTYKGYPHGMPT-THADVINADLLAFIR 275 (276)
T ss_dssp SSSCSTTTHHHHHHHST----TEEEEEETTCCTTHHH-HTHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHhhCC----CceEEEcCCCCCchhh-hCHHHHHHHHHHHhc
Confidence 9999874443 333332 4899999999998753 455678888988885
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-18 Score=175.26 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=149.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH---HHHHHHCCcEEEEECCCCCCCCChhhhhc-CCCCcc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQS-LPGKVG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~---~~~la~~G~~V~~~d~rG~~~~g~~~~~~-~~~~~~ 593 (771)
+.++.++ +.|. .++.|+||++||++.......|... .+.+++.||.|+++|++++..+....... ..+...
T Consensus 20 ~~~i~v~-~~p~----~~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~~~~~~~~~~g~~~ 94 (304)
T 1sfr_A 20 GRDIKVQ-FQSG----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQ 94 (304)
T ss_dssp TEEEEEE-EECC----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCBCSSCEEETTEEE
T ss_pred CCceEEE-ECCC----CCCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCccccccCCccccccccc
Confidence 4566666 4443 1678999999997532223345442 35677889999999998754332110000 000000
Q ss_pred ccchhhH--HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC-------CCCc
Q 004149 594 SQDVNDV--LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------DIPD 664 (771)
Q Consensus 594 ~~~~~D~--~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-------~~~~ 664 (771)
....+++ .+.+.++.++..+++++++|+|+||||++|+.++.++|++|+++++.+|..+........ ....
T Consensus 95 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~~~~~~~~ 174 (304)
T 1sfr_A 95 TYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGG 174 (304)
T ss_dssp CCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccchhhhhhHhhhhccc
Confidence 1223332 234444444334677899999999999999999999999999999999987543210000 0000
Q ss_pred chhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC---CCcEEEEeeCCCC--------------ccCcHHHHHHH
Q 004149 665 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQYA 727 (771)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~--------------~vp~~~~~~~~ 727 (771)
+.....++. + ....+...+|...+.++ ++|++|++|+.|+ .++..++++++
T Consensus 175 ~~~~~~~g~---------~---~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~ 242 (304)
T 1sfr_A 175 YKASDMWGP---------K---EDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQ 242 (304)
T ss_dssp CCHHHHHCS---------T---TSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhcCC---------c---chhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHHHHHHHHH
Confidence 000001111 1 11345566676655544 5899999999998 67889999999
Q ss_pred HHHHhCC-CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 728 RALREKG-VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 728 ~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+.|++.| +++++.+|++++|.+. .....+..++.||.++|+
T Consensus 243 ~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~ 284 (304)
T 1sfr_A 243 DAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALG 284 (304)
T ss_dssp HHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHT
T ss_pred HHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhcC
Confidence 9999999 9999999977799752 234556778889988764
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-17 Score=166.31 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=137.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|..+++..+.|+ +.|+||++||.+.+ ...|...+..|+++||.|+++|+||. |.+... ...
T Consensus 5 ~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~---G~S~~~-----~~~ 68 (275)
T 1a88_A 5 TSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRGH---GRSDQP-----STG 68 (275)
T ss_dssp CTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC-----SSC
T ss_pred ccCCCEEEEEEcCCC------CCceEEEECCCCCc--hhhHHHHHHHHHHCCceEEEEcCCcC---CCCCCC-----CCC
Confidence 345777776655432 23689999997655 45788888999999999999999994 444211 111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchhhhhc--CCCCCcch-----
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVG--TTDIPDWC----- 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~--~~~~~~~~----- 666 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++......... ....+...
T Consensus 69 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (275)
T 1a88_A 69 HDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEFR 146 (275)
T ss_dssp CSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCCHHHHHHHH
Confidence 2344444333333333 1346899999999999999877776 999999999886432100000 00000000
Q ss_pred ---------hhhhccC-C--CCCcCCCCCChhhHHH-------------------HhhcCccccccCCCCcEEEEeeCCC
Q 004149 667 ---------YVESYGS-K--GKDSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 667 ---------~~~~~~~-~--~~~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
+...+.. . ................ +...+....+.++++|+|+++|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 226 (275)
T 1a88_A 147 AALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTDD 226 (275)
T ss_dssp HHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCCEEEEecCCC
Confidence 0000000 0 0000000011111110 1111222345678999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+|++...+.+..+ ..++++++++++||.+.. +...++.+.+.+||+
T Consensus 227 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 227 QVVPYADAAPKSAEL---LANATLKSYEGLPHGMLS-THPEVLNPDLLAFVK 274 (275)
T ss_dssp SSSCSTTTHHHHHHH---STTEEEEEETTCCTTHHH-HCHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHhh---CCCcEEEEcCCCCccHHH-hCHHHHHHHHHHHhh
Confidence 999987544433332 224899999999998763 455678888999985
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=166.68 Aligned_cols=229 Identities=18% Similarity=0.263 Sum_probs=136.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++++..+. ..|+||++||.+.+ ...|...+..|+++||.|+++|+||. |.+.. + ...
T Consensus 5 ~~~g~~l~y~~~g--------~~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~---G~S~~---~--~~~ 66 (273)
T 1a8s_A 5 TRDGTQIYYKDWG--------SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRGH---GRSSQ---P--WSG 66 (273)
T ss_dssp CTTSCEEEEEEES--------CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCC---C--SSC
T ss_pred cCCCcEEEEEEcC--------CCCEEEEECCCCCc--HHHHhhHHhhHhhCCcEEEEECCCCC---CCCCC---C--CCC
Confidence 3456667544331 23679999997655 45788888999999999999999994 44421 1 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchhhhhcC-C-CCCcch-----
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGT-T-DIPDWC----- 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~-~-~~~~~~----- 666 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++.......... . ......
T Consensus 67 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (273)
T 1a8s_A 67 NDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIR 144 (273)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCcHHHHHHHH
Confidence 2344444444444443 2456899999999999999877765 8999999998864211000000 0 000000
Q ss_pred ---------hhhhccC-C--CCCcCCCCCChhhHH-------------------HHhhcCccccccCCCCcEEEEeeCCC
Q 004149 667 ---------YVESYGS-K--GKDSFTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 667 ---------~~~~~~~-~--~~~~~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
+...+.. . ............... .+...+....+.++++|+|+++|++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 224 (273)
T 1a8s_A 145 QASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDAD 224 (273)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEEEEEETTC
T ss_pred HHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCCEEEEECCCC
Confidence 0000000 0 000000000111100 01112223356789999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+|++...+.+..+. .+.++++++++||.+.. +...++.+.+.+||+
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 225 QVVPIEASGIASAALV---KGSTLKIYSGAPHGLTD-THKDQLNADLLAFIK 272 (273)
T ss_dssp SSSCSTTTHHHHHHHS---TTCEEEEETTCCSCHHH-HTHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHhC---CCcEEEEeCCCCCcchh-hCHHHHHHHHHHHHh
Confidence 9999885444333322 24789999999998753 455678888999986
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-18 Score=172.31 Aligned_cols=229 Identities=14% Similarity=0.110 Sum_probs=142.8
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+|..+++..+-|+ ..|+||++||.+.+ .. .|...+..| +.||.|+++|+|| +|.+... +.....
T Consensus 10 ~~g~~l~~~~~G~~------~~~~vvllHG~~~~--~~~~w~~~~~~L-~~~~~vi~~Dl~G---~G~S~~~--~~~~~~ 75 (286)
T 2yys_A 10 VGEAELYVEDVGPV------EGPALFVLHGGPGG--NAYVLREGLQDY-LEGFRVVYFDQRG---SGRSLEL--PQDPRL 75 (286)
T ss_dssp CSSCEEEEEEESCT------TSCEEEEECCTTTC--CSHHHHHHHGGG-CTTSEEEEECCTT---STTSCCC--CSCGGG
T ss_pred ECCEEEEEEeecCC------CCCEEEEECCCCCc--chhHHHHHHHHh-cCCCEEEEECCCC---CCCCCCC--ccCccc
Confidence 35677876665442 34789999997765 45 577778778 5689999999999 4444210 111012
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh----hh-cC--CCCCc-ch
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MV-GT--TDIPD-WC 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~----~~-~~--~~~~~-~~ 666 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++|+ ++++|+.+|...... .. .. ..... ..
T Consensus 76 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (286)
T 2yys_A 76 FTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPLPDPEE 152 (286)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCCSCHHH
T ss_pred CcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccchhHHH
Confidence 3455555555555554 234689999999999999999999999 999999998653221 00 00 00000 00
Q ss_pred -h------------hhhc--cCC-------CC-CcCCCCCChhhHH-----HHhhcCccccccCCCCcEEEEeeCCCCcc
Q 004149 667 -Y------------VESY--GSK-------GK-DSFTESPSVEDLT-----RFHSKSPISHISKVKTPTIFLLGAQDLRV 718 (771)
Q Consensus 667 -~------------~~~~--~~~-------~~-~~~~~~~~~~~~~-----~~~~~sp~~~~~~i~~P~Lii~G~~D~~v 718 (771)
. ...+ ... .. ..+.......... .....+....+.++++|+|+++|++|..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 232 (286)
T 2yys_A 153 NLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRPLYVLVGERDGTS 232 (286)
T ss_dssp HHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSCEEEEEETTCTTT
T ss_pred HHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCCEEEEEeCCCCcC
Confidence 0 0000 000 00 0000000000000 01111233456788999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 719 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 719 p~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
|++ ++.+.+ +.. .++++++++||..... ...++.+.+.+||++
T Consensus 233 ~~~-~~~~~~-~~~----~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 275 (286)
T 2yys_A 233 YPY-AEEVAS-RLR----APIRVLPEAGHYLWID-APEAFEEAFKEALAA 275 (286)
T ss_dssp TTT-HHHHHH-HHT----CCEEEETTCCSSHHHH-CHHHHHHHHHHHHHT
T ss_pred CHh-HHHHHh-CCC----CCEEEeCCCCCCcChh-hHHHHHHHHHHHHHh
Confidence 999 888888 765 5788999999986643 356888999999976
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-16 Score=186.46 Aligned_cols=263 Identities=11% Similarity=0.070 Sum_probs=175.2
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.+..++|||| ++++|..+ ..++.++ .+++..+++...... ..++|||||++|||+.
T Consensus 83 ~v~~~~~spd-~~~~~~~~-----~~i~~~d~~~~~~~~l~~~~~~~----------~~~~~SpdG~~la~~~------- 139 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQ-----GGLVGFDMLARKVTYLFDTNEET----------ASLDFSPVGDRVAYVR------- 139 (706)
T ss_dssp CCEEEEETTT-TEEEEEET-----TEEEEEETTTTEEEEEECCTTCC----------TTCEECTTSSEEEEEE-------
T ss_pred CceeEEECCC-CeEEEEEC-----CEEEEEECCCCceEEccCCcccc----------cCCcCCCCCCEEEEEE-------
Confidence 4788999999 88888755 2466655 555555555433333 5899999999999962
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-----CceeeccCCCCCCc------------
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-----GEVQAVKGIPKSLS------------ 241 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-----~~~~~l~~~~~~~~------------ 241 (771)
...|++||+.+ ++.+++ +.....
T Consensus 140 --------------------------------------~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 140 --------------------------------------NHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp --------------------------------------TTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCCGGGC
T ss_pred --------------------------------------CCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccchhhhh
Confidence 25799999999 888887 333222
Q ss_pred ---cceEEEecCCCCCccEEEEEeecCccee--------------eeeeee----ccCCceeEEEecccccchhhhhhhh
Q 004149 242 ---VGQVVWAPLNEGLHQYLVFVGWSSETRK--------------LGIKYC----YNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 242 ---~~~~~wspDg~~~~~~l~~~~~~~~~~~--------------~g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
+..+.|||||+. |+|.+....... ....|. .+....|+++|+
T Consensus 180 ~~~~~~~~~SpDg~~----la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~------------- 242 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSC----LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL------------- 242 (706)
T ss_dssp TTCCCSEEECTTSSE----EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET-------------
T ss_pred cCCCceEEECCCCCE----EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC-------------
Confidence 478999999999 999874321100 000000 113357999998
Q ss_pred cCCCCCCcceecCC---CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC-CCCCCccceeeEEeccc
Q 004149 301 ESSSEDLPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 301 ~~~~~~~~~~~lt~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~ 376 (771)
.+++.+.+.. ....+..+.|||||++|++.+.+.. .....|+++|+.++ ..+.+....
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~v~~~d~~~g~~~~~~~~~~-------- 304 (706)
T 2z3z_A 243 ----ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA------QNECKVNAYDAETGRFVRTLFVET-------- 304 (706)
T ss_dssp ----TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT------SCEEEEEEEETTTCCEEEEEEEEE--------
T ss_pred ----CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC------CCeeEEEEEECCCCceeeEEEEcc--------
Confidence 7777666653 2345788999999999999876531 23467999999887 322221110
Q ss_pred ccCCCCCcccccCCCCCCcccc--CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCcee-eEEeecCCEEEEEEeC
Q 004149 377 CAEGDCFPGLYSSSILSNPWLS--DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLTLDGDNIIAVSSS 453 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~-~~~s~d~~~l~~~~s~ 453 (771)
... |......+.||| ||+ +++++..++..+||.++.+++.++.++........ ..|++|++.|++..+.
T Consensus 305 ---~~~----~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 305 ---DKH----YVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp ---CSS----CCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred ---CCC----eECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 000 101134678999 998 55666667788999999877888888776544433 6899999999888865
Q ss_pred CCC-CCeEEEEEeccc
Q 004149 454 PVD-VPQVKYGYFVDK 468 (771)
Q Consensus 454 ~~~-p~~l~~~~~~~~ 468 (771)
... -..||..++.++
T Consensus 377 ~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCTTCBEEEEEETTCC
T ss_pred CCCceEEEEEEEcCCC
Confidence 321 246787776543
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-18 Score=170.04 Aligned_cols=221 Identities=14% Similarity=0.098 Sum_probs=137.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
....|+||++||.+.+ ...|...+..|+++||.|+++|+||.+ .+... .......++..+.+..+++.. -
T Consensus 9 ~~~~~~vvllHG~~~~--~~~~~~~~~~l~~~g~~v~~~D~~G~G---~S~~~----~~~~~~~~~~~~~~~~~l~~l-~ 78 (267)
T 3sty_A 9 PFVKKHFVLVHAAFHG--AWCWYKIVALMRSSGHNVTALDLGASG---INPKQ----ALQIPNFSDYLSPLMEFMASL-P 78 (267)
T ss_dssp -CCCCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTST---TCSCC----GGGCCSHHHHHHHHHHHHHTS-C
T ss_pred CCCCCeEEEECCCCCC--cchHHHHHHHHHhcCCeEEEeccccCC---CCCCc----CCccCCHHHHHHHHHHHHHhc-C
Confidence 3456899999997755 457888999999999999999999944 43211 011134555555555555442 1
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-----hhcCC--CCCcchhhhhc-cC--CC--------
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVGTT--DIPDWCYVESY-GS--KG-------- 675 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----~~~~~--~~~~~~~~~~~-~~--~~-------- 675 (771)
+.+++.|+|||+||.+++.++.++|++++++|+.++...... ..... ....|...... .. ..
T Consensus 79 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
T 3sty_A 79 ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAG 158 (267)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECC
T ss_pred CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhh
Confidence 467899999999999999999999999999998888543210 00000 00011000000 00 00
Q ss_pred ----CCcCCCCCChhhHHH---------------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004149 676 ----KDSFTESPSVEDLTR---------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 676 ----~~~~~~~~~~~~~~~---------------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
...+........... +............++|+|+++|++|..+|++.++.+.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---- 234 (267)
T 3sty_A 159 PKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPP---- 234 (267)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhCCC----
Confidence 000001111111111 111111112222358999999999999999888887777643
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+++++++++||.... +...++.+.+.+|++++
T Consensus 235 ~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 235 DEVKEIEGSDHVTMM-SKPQQLFTTLLSIANKY 266 (267)
T ss_dssp SEEEECTTCCSCHHH-HSHHHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCccccc-cChHHHHHHHHHHHHhc
Confidence 689999999998653 44568888999999874
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-18 Score=164.44 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=118.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.|+|||+||...+..........++++++ +|.|++||++| +|.+ ..+.++.++.. .+
T Consensus 2 mptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~---~g~~----------------~~~~l~~~~~~--~~ 60 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPP---YPAE----------------AAEMLESIVMD--KA 60 (202)
T ss_dssp -CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCS---SHHH----------------HHHHHHHHHHH--HT
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCC---CHHH----------------HHHHHHHHHHh--cC
Confidence 48999999965443222223345566665 49999999998 4432 23333333333 24
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhc
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 694 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (771)
.++|+|+|+||||++|+.++.++|.....++...+............. .+ .. ...+. ...... ....
T Consensus 61 ~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~---~~~~~--~~~~~~--~~~~ 127 (202)
T 4fle_A 61 GQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQ-NP-----YT---GQKYV--LESRHI--YDLK 127 (202)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEE-CT-----TT---CCEEE--ECHHHH--HHHH
T ss_pred CCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhc-cc-----cc---ccccc--chHHHH--HHHH
Confidence 679999999999999999999999887777665554332211100000 00 00 00000 001111 1122
Q ss_pred CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 695 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 695 sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.....+.++++|+|++||++|.+||++++.++++ ++++++++|++|.+... .++++.|.+||+
T Consensus 128 ~~~~~~~~~~~P~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~ 190 (202)
T 4fle_A 128 AMQIEKLESPDLLWLLQQTGDEVLDYRQAVAYYT-------PCRQTVESGGNHAFVGF---DHYFSPIVTFLG 190 (202)
T ss_dssp TTCCSSCSCGGGEEEEEETTCSSSCHHHHHHHTT-------TSEEEEESSCCTTCTTG---GGGHHHHHHHHT
T ss_pred hhhhhhhccCceEEEEEeCCCCCCCHHHHHHHhh-------CCEEEEECCCCcCCCCH---HHHHHHHHHHHh
Confidence 3344567788999999999999999999888763 36899999999987543 356888999986
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-18 Score=176.77 Aligned_cols=222 Identities=16% Similarity=0.162 Sum_probs=142.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++....+ .|+||++||++.. ...|...+..|++ ||.|+++|+||.+. +. .......
T Consensus 56 ~~~~~~~~~~g~--------~p~vv~lhG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G~G~---S~-----~~~~~~~ 116 (314)
T 3kxp_A 56 GRITLNVREKGS--------GPLMLFFHGITSN--SAVFEPLMIRLSD-RFTTIAVDQRGHGL---SD-----KPETGYE 116 (314)
T ss_dssp SSCEEEEEEECC--------SSEEEEECCTTCC--GGGGHHHHHTTTT-TSEEEEECCTTSTT---SC-----CCSSCCS
T ss_pred CCEEEEEEecCC--------CCEEEEECCCCCC--HHHHHHHHHHHHc-CCeEEEEeCCCcCC---CC-----CCCCCCC
Confidence 466666554422 5799999997655 3467777888876 79999999999544 32 1122234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh--------cCC--CCCcch
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--------GTT--DIPDWC 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~--------~~~--~~~~~~ 666 (771)
.+++.+.+..+++.. +.++++|+|||+||.+++.++.++|++++++|+.+|........ ... ....+.
T Consensus 117 ~~~~~~dl~~~l~~l--~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (314)
T 3kxp_A 117 ANDYADDIAGLIRTL--ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDIK 194 (314)
T ss_dssp HHHHHHHHHHHHHHH--TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBSSHH
T ss_pred HHHHHHHHHHHHHHh--CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhcCHH
Confidence 566666666555542 34789999999999999999999999999999998865321110 000 000000
Q ss_pred hhhhccCCCCCcCCCCCChhhHHHH---------------------------hhcCccccccCCCCcEEEEeeCCCCccC
Q 004149 667 YVESYGSKGKDSFTESPSVEDLTRF---------------------------HSKSPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~sp~~~~~~i~~P~Lii~G~~D~~vp 719 (771)
....+. ...+.. ........+ ...+....+.++++|+|+++|++|.++|
T Consensus 195 ~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~~~ 270 (314)
T 3kxp_A 195 AVEAYL---AGRYPN-IPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVLIVRGESSKLVS 270 (314)
T ss_dssp HHHHHH---HHHSTT-SCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEEEEEETTCSSSC
T ss_pred HHHHHH---Hhhccc-CchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEEEEecCCCccCC
Confidence 000000 000000 000100000 0113444567889999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++.+..+.+.+.. ++++++++++|.+.. +...++.+.+.+||++
T Consensus 271 ~~~~~~~~~~~~~----~~~~~~~g~gH~~~~-e~~~~~~~~i~~fl~~ 314 (314)
T 3kxp_A 271 AAALAKTSRLRPD----LPVVVVPGADHYVNE-VSPEITLKAITNFIDA 314 (314)
T ss_dssp HHHHHHHHHHCTT----SCEEEETTCCSCHHH-HCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCC----ceEEEcCCCCCcchh-hCHHHHHHHHHHHHhC
Confidence 9998888877743 688999999998753 3355788889889863
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=180.47 Aligned_cols=231 Identities=16% Similarity=0.188 Sum_probs=142.1
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+.+|..++.... + ..|+||++||++.. ...|...+..|+++||.|+++|+||.+.+... ..
T Consensus 9 ~~~dG~~l~y~~~------G--~gp~VV~lHG~~~~--~~~~~~l~~~La~~Gy~Vi~~D~rG~G~S~~~--------~~ 70 (456)
T 3vdx_A 9 ENSTSIDLYYEDH------G--TGVPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGFGQSSQP--------TT 70 (456)
T ss_dssp ETTEEEEEEEEEE------S--SSEEEEEECCTTCC--GGGGTTHHHHHHHHTEEEEEECCTTSTTSCCC--------SS
T ss_pred cccCCeEEEEEEe------C--CCCEEEEECCCCCc--HHHHHHHHHHHHHCCcEEEEECCCCCCCCCCC--------CC
Confidence 4556777764332 1 34899999997765 44677788899899999999999995443211 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchhhhhcCCCCCc--------
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTTDIPD-------- 664 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~~~~~~-------- 664 (771)
...++++.+.+..+++. ++.++++|+|||+||.+++.+++++ |++++++|+.+|...............
T Consensus 71 ~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (456)
T 3vdx_A 71 GYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQEFFDG 148 (456)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccchHHHHHH
Confidence 22334444333333333 2456899999999999999888877 899999999998753211100000000
Q ss_pred ---------chh----hhhccCCCCCcCCCCCChhhHHHH------------------hhcCccccccCCCCcEEEEeeC
Q 004149 665 ---------WCY----VESYGSKGKDSFTESPSVEDLTRF------------------HSKSPISHISKVKTPTIFLLGA 713 (771)
Q Consensus 665 ---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~sp~~~~~~i~~P~Lii~G~ 713 (771)
..+ ...+... ...............+ ...+....+.++++|+|+++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~PvLiI~G~ 227 (456)
T 3vdx_A 149 IVAAVKADRYAFYTGFFNDFYNL-DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGT 227 (456)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTT-TTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTCCSCCEEEEET
T ss_pred HHHhhhccchHHHHHHHHHHhcc-cccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhCCCCEEEEEeC
Confidence 000 0000000 0000000000100000 0123334567889999999999
Q ss_pred CCCccCcH-HHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 714 QDLRVPVS-NGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 714 ~D~~vp~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+|..+|++ ....+.+.+ .+++++++++++|.+.. +....+.+.+.+||++++
T Consensus 228 ~D~~vp~~~~~~~l~~~~----~~~~~~~i~gagH~~~~-e~p~~v~~~I~~FL~~~l 280 (456)
T 3vdx_A 228 GDRTLPIENTARVFHKAL----PSAEYVEVEGAPHGLLW-THAEEVNTALLAFLAKAL 280 (456)
T ss_dssp TCSSSCGGGTHHHHHHHC----TTSEEEEETTCCSCTTT-TTHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHC----CCceEEEeCCCCCcchh-hCHHHHHHHHHHHHHHhh
Confidence 99999988 444444433 34799999999998764 556788999999999875
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=166.67 Aligned_cols=227 Identities=15% Similarity=0.195 Sum_probs=136.4
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.++++..+. ..|+||++||.+.+ ...|...+..|+++||.|+++|+||. |.+... ....
T Consensus 6 ~~g~~l~y~~~g--------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G~---G~S~~~-----~~~~ 67 (274)
T 1a8q_A 6 RDGVEIFYKDWG--------QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGH---GHSTPV-----WDGY 67 (274)
T ss_dssp TTSCEEEEEEEC--------SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC-----SSCC
T ss_pred cCCCEEEEEecC--------CCceEEEECCCcch--HHHHHHHHHHHHhCCCeEEEEcCCCC---CCCCCC-----CCCC
Confidence 356667544331 23679999997655 45788888999999999999999994 443211 1122
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchhhhhcC-C-CCCcchh-----
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGT-T-DIPDWCY----- 667 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~-~-~~~~~~~----- 667 (771)
..+++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++.......... . ..+...+
T Consensus 68 ~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (274)
T 1a8q_A 68 DFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFDALKN 145 (274)
T ss_dssp SHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchHHHHHHHHH
Confidence 344444444444443 2456899999999999999877776 8999999998864311000000 0 0000000
Q ss_pred ---------hh----hccCCCCCcCCCCCChhhHH-------------------HHhhcCccccccCCCCcEEEEeeCCC
Q 004149 668 ---------VE----SYGSKGKDSFTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 668 ---------~~----~~~~~~~~~~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
.. .+.. .............. .+...+....+.++++|+|+++|++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 223 (274)
T 1a8q_A 146 GVLTERSQFWKDTAEGFFS--ANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDDD 223 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTT--TTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETTC
T ss_pred HhhccHHHHHHHhcccccc--cccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCCEEEEecCcC
Confidence 00 0000 00000000001000 11112233456789999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC-CChHHHHHHHHHHHH
Q 004149 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP-QSDFESFLNIGLWFK 767 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~wl~ 767 (771)
.++|++...+.+..+ ..++++++++++||.+... +...++.+.+.+||+
T Consensus 224 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 224 QVVPIDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp SSSCGGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhh---CCCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 999988544433332 1247899999999987753 245678888999985
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=162.86 Aligned_cols=203 Identities=12% Similarity=0.105 Sum_probs=134.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH--CCcEEEEECCCCCCC------CChhhhhcCCCCc
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSLG------FGEEALQSLPGKV 592 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~V~~~d~rG~~~------~g~~~~~~~~~~~ 592 (771)
+...++.|+ .+..++||++||.+.+ ...+...+..|.. .++.+++|+-+.... .+..|........
T Consensus 25 l~y~ii~P~----~~~~~~VI~LHG~G~~--~~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~~~~~~ 98 (246)
T 4f21_A 25 MNYELMEPA----KQARFCVIWLHGLGAD--GHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIKSLDA 98 (246)
T ss_dssp CCEEEECCS----SCCCEEEEEEEC--CC--CCCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTCCCC--
T ss_pred cCceEeCCC----CcCCeEEEEEcCCCCC--HHHHHHHHHHhhhcCCCeEEEeCCCCccccccCCCCCcccccccccccc
Confidence 556678886 2345799999996554 3344444444432 368888887432110 1122221111000
Q ss_pred -------cccchhhHHHHHHHHHH---cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCC
Q 004149 593 -------GSQDVNDVLTAIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI 662 (771)
Q Consensus 593 -------~~~~~~D~~~~i~~l~~---~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~ 662 (771)
....+....+.++.+++ ...++++||+|+|+|+||.+++.++.++|+.++++++.++.+......
T Consensus 99 ~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~~----- 173 (246)
T 4f21_A 99 NSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDNF----- 173 (246)
T ss_dssp -CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHHH-----
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCccccc-----
Confidence 00112233333333322 234899999999999999999999999999999999998864211100
Q ss_pred CcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 663 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
.. ... ....++|+|++||+.|++||++.++++++.|++.|.++++..|
T Consensus 174 ---------~~-------------------~~~----~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~y 221 (246)
T 4f21_A 174 ---------KG-------------------KIT----SINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKHY 221 (246)
T ss_dssp ---------ST-------------------TCC----GGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ---------cc-------------------ccc----ccccCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 00 000 0113579999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 743 PNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++.+|.+. .+.+..+.+||++.||
T Consensus 222 ~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 222 VGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp SSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred CCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 99999875 4567899999999886
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-18 Score=169.24 Aligned_cols=218 Identities=16% Similarity=0.079 Sum_probs=137.2
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|+||++||.+.+ ...|...+..|+++||.|+++|+||.+.+.... ......++..+.+..+++.... .++
T Consensus 5 ~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHG--AWIWYKLKPLLESAGHRVTAVELAASGIDPRPI-------QAVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTSTTCSSCG-------GGCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCc--cccHHHHHHHHHhCCCEEEEecCCCCcCCCCCC-------CccccHHHhHHHHHHHHHHhcc-cCc
Confidence 889999997765 456888899999999999999999954432210 1113455555555555554212 378
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-------CCCCCcchhhhhc---cC-----------C-C
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDWCYVESY---GS-----------K-G 675 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------~~~~~~~~~~~~~---~~-----------~-~ 675 (771)
+.|+|||+||.+++.++.++|++++++|+.+|......... ......|...... +. . .
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFM 154 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHHH
Confidence 99999999999999999999999999999888543210000 0000001000000 00 0 0
Q ss_pred CCcCCCCCChhhHHHHh--------------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 676 KDSFTESPSVEDLTRFH--------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~--------------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
...+...........+. ...........++|+|+++|++|..+|++.++.+.+.+.. .++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~ 230 (258)
T 3dqz_A 155 KARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNV----SKVYE 230 (258)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHSCC----SCEEE
T ss_pred HHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeCHHHHHHHHHhCCc----ccEEE
Confidence 00000011111111110 0112222223368999999999999999988888777643 58889
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
++++||.... +...++.+.|.+|+++||
T Consensus 231 ~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 231 IDGGDHMVML-SKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp ETTCCSCHHH-HSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCchhh-cChHHHHHHHHHHHHHhC
Confidence 9999998664 455688899999999875
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=189.30 Aligned_cols=242 Identities=13% Similarity=0.095 Sum_probs=158.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----------------cc----hHHHHHHHHCCcEEE
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------------SY----SKSLAFLSSVGYSLL 570 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----------------~~----~~~~~~la~~G~~V~ 570 (771)
.+...||.+|.+.+|+|++ .++.|+||+.||.+...... .+ ...++.|+++||+|+
T Consensus 45 ~i~~~DG~~L~a~l~~P~~---~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~Gy~vv 121 (560)
T 3iii_A 45 TVEMRDGEKLYINIFRPNK---DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWVPNDYVVV 121 (560)
T ss_dssp EEECTTSCEEEEEEEECSS---SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHGGGTCEEE
T ss_pred EEECCCCcEEEEEEEecCC---CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHHHhCCCEEE
Confidence 4556689999999999983 57899999999854432100 00 013678999999999
Q ss_pred EECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 571 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 571 ~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
++|+||.++++..+. .++..+.+|+.++++|+.+++.++ .||+++|+|+||++++.+|+.+|+.++|+|+.+|+
T Consensus 122 ~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~aiv~~~~~ 195 (560)
T 3iii_A 122 KVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGL 195 (560)
T ss_dssp EEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEEEEESCC
T ss_pred EEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 999999887765532 234467899999999999987776 89999999999999999999999999999999999
Q ss_pred cchhhh-hcCCCCCcchhh--------hhccCC-CCC----cCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCC
Q 004149 651 CNLALM-VGTTDIPDWCYV--------ESYGSK-GKD----SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 651 ~~~~~~-~~~~~~~~~~~~--------~~~~~~-~~~----~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~ 716 (771)
.++..- .....+....+. ..+... ... .+...+..+ +.+...++ .+++|++|+|+++|-.|.
T Consensus 196 ~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d--~~W~~~~~--~~~~I~vPvl~v~Gw~D~ 271 (560)
T 3iii_A 196 NDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFD--DFWKQRQV--PLSQIKTPLLTCASWSTQ 271 (560)
T ss_dssp CBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSC--HHHHTTBC--CGGGCCSCEEEEEEGGGT
T ss_pred ccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcc--hHhhccCC--chhhCCCCEEEeCCcCCC
Confidence 986531 111111100000 000000 000 000011111 12333333 578999999999999997
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
.+....+.+.+++++..+ ..+++.+ .+|... ....+.++..++||++|||
T Consensus 272 ~~~~~g~l~~y~~l~~~~--k~l~ih~-~~~~~~--~~~~~~~~~~~~wfD~~Lk 321 (560)
T 3iii_A 272 GLHNRGSFEGFKQAASEE--KWLYVHG-RKEWES--YYARENLERQKSFFDFYLK 321 (560)
T ss_dssp TTTHHHHHHHHHHCCCSS--EEEEEES-SCHHHH--HHSHHHHHHHHHHHHHHTS
T ss_pred cccchhHHHHHHhccccC--cEEEECC-CCCcCc--ccChhHHHHHHHHHHHHhC
Confidence 555566677777765432 3333332 223210 0012466889999999997
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-18 Score=171.60 Aligned_cols=227 Identities=15% Similarity=0.251 Sum_probs=141.5
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|..+++...-+ ...|+||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+... . .
T Consensus 10 ~~~~g~~l~y~~~G~------~~~p~lvl~hG~~~~--~~~w~~~~~~L~~-~~~vi~~D~rG---~G~S~~~--~---~ 72 (266)
T 3om8_A 10 ATSDGASLAYRLDGA------AEKPLLALSNSIGTT--LHMWDAQLPALTR-HFRVLRYDARG---HGASSVP--P---G 72 (266)
T ss_dssp ECTTSCEEEEEEESC------TTSCEEEEECCTTCC--GGGGGGGHHHHHT-TCEEEEECCTT---STTSCCC--C---S
T ss_pred eccCCcEEEEEecCC------CCCCEEEEeCCCccC--HHHHHHHHHHhhc-CcEEEEEcCCC---CCCCCCC--C---C
Confidence 345678887666543 235889999997654 4567788888875 79999999999 5544311 1 1
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh----------hhcCCCCC
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----------MVGTTDIP 663 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~----------~~~~~~~~ 663 (771)
...++++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++...... ........
T Consensus 73 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
T 3om8_A 73 PYTLARLGEDVLELLDA--LEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMS 150 (266)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCSSSH
T ss_pred CCCHHHHHHHHHHHHHH--hCCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHccccHH
Confidence 22345555445444444 2346899999999999999999999999999999876432100 00000000
Q ss_pred cch--hhhhccCCCCCcCCCCCC-hhh----------------HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHH
Q 004149 664 DWC--YVESYGSKGKDSFTESPS-VED----------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 664 ~~~--~~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~ 724 (771)
... ....+... ......+. .+. ...+...+....+.++++|+|+++|++|.++|++.++
T Consensus 151 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~ 228 (266)
T 3om8_A 151 ETAAGFLGNWFPP--ALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGE 228 (266)
T ss_dssp HHHHHHHHHHSCH--HHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSSCHHHHH
T ss_pred HHHHHHHHHhcCh--hhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCCCHHHHH
Confidence 000 00000000 00000000 000 0011112223457789999999999999999999998
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.+.+.+.. .++++++ +||... .+...++.+.+.+||.
T Consensus 229 ~l~~~ip~----a~~~~i~-~gH~~~-~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 229 LIAASIAG----ARLVTLP-AVHLSN-VEFPQAFEGAVLSFLG 265 (266)
T ss_dssp HHHHHSTT----CEEEEES-CCSCHH-HHCHHHHHHHHHHHHT
T ss_pred HHHHhCCC----CEEEEeC-CCCCcc-ccCHHHHHHHHHHHhc
Confidence 88887764 6888887 799765 4445577888888874
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=169.72 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=145.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.|.++.++ |.|++ .|+||++||++.......|.. ..+.+++.||.|+++|++++..+.. +..... +
T Consensus 21 ~~~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~~-~~~~~~---~ 89 (280)
T 1r88_A 21 MGRDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTN-WEQDGS---K 89 (280)
T ss_dssp TTEEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTSB-CSSCTT---C
T ss_pred cCCcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccCC-CCCCCC---C
Confidence 46778877 77763 289999999853222334443 4566778899999999977543311 100000 1
Q ss_pred ccchhh-H-HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 594 SQDVND-V-LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 594 ~~~~~D-~-~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
...+ + .+.+.++.++..+++++++|+|+||||++|+.++.++|++|+++++.+|..+.........+... ....
T Consensus 90 --~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~~--~~~~ 165 (280)
T 1r88_A 90 --QWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAG--MQQF 165 (280)
T ss_dssp --BHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHHHHH--HHHH
T ss_pred --cHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccchhhHHHH--hhhc
Confidence 1212 1 13344444434477789999999999999999999999999999999998764321000000000 0000
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCC---CCcEEEEe----eCCCCc-------cCcHHHHHHHHHHHhCC-CC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLL----GAQDLR-------VPVSNGLQYARALREKG-VE 736 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~----G~~D~~-------vp~~~~~~~~~~l~~~g-~~ 736 (771)
+......+.+.+ ....+...+|...+.++ ++|++|.+ |+.|.. ++.++++++++.|++.| ++
T Consensus 166 ~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 242 (280)
T 1r88_A 166 GGVDTNGMWGAP---QLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHN 242 (280)
T ss_dssp HCCCTHHHHCCG---GGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cccchhhhcCCC---chhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHHCCCcc
Confidence 000000000000 01234455676655554 58999999 999984 58899999999999999 99
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++.++++++|.+. .....+...+.||.+-|
T Consensus 243 ~~~~~~~~g~H~~~---~w~~~l~~~l~~~~~~~ 273 (280)
T 1r88_A 243 GHFDFPASGDNGWG---SWAPQLGAMSGDIVGAI 273 (280)
T ss_dssp EEEECCSSCCSSHH---HHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCcChh---HHHHHHHHHHHHHHHHH
Confidence 99999888899753 12334556666665544
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=191.40 Aligned_cols=243 Identities=14% Similarity=0.121 Sum_probs=162.0
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
+...||.+|.+.+|.|+ ..++.|+||++||.+..... ..|...+ ..|+++||+|+++|+||+++++..+..
T Consensus 14 i~~~DG~~L~~~~~~P~---~~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~~~~---- 86 (587)
T 3i2k_A 14 VPMRDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFVP---- 86 (587)
T ss_dssp EECTTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSCCCT----
T ss_pred EECCCCCEEEEEEEECC---CCCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCcccc----
Confidence 44567899999999997 34578999999985433110 0122123 789999999999999998777654321
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc-cchhhhh-cCCCCC-----
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLALMV-GTTDIP----- 663 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~-~~~~~~~-~~~~~~----- 663 (771)
...+.+|+.++++||.+++..+ .+|+++|+||||++++.++.++|+.++++|+.++. .++..-. ......
T Consensus 87 --~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG~~~~~~~ 163 (587)
T 3i2k_A 87 --HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEAL 163 (587)
T ss_dssp --TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHHH
T ss_pred --ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCCccccchH
Confidence 2346899999999999887555 79999999999999999999989999999999988 6643211 000010
Q ss_pred -cchhhh------------------------------hc-cCCCCC-------------cC-CCCCChhhHHHHhhcCcc
Q 004149 664 -DWCYVE------------------------------SY-GSKGKD-------------SF-TESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 664 -~~~~~~------------------------------~~-~~~~~~-------------~~-~~~~~~~~~~~~~~~sp~ 697 (771)
.|.... .+ ...... .. ...+ .....|...++.
T Consensus 164 ~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~yw~~~s~~ 241 (587)
T 3i2k_A 164 LGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHP--DNDESWQSISLF 241 (587)
T ss_dssp HHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCC--SCCHHHHTTCCH
T ss_pred HHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCC--CCChHHhcCChh
Confidence 111100 00 000000 00 0001 111335566777
Q ss_pred ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---------CCChH---HHHHHHHHH
Q 004149 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---------PQSDF---ESFLNIGLW 765 (771)
Q Consensus 698 ~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---------~~~~~---~~~~~i~~w 765 (771)
..+++|++|+|+++|..|..+ ..+.+++++|+..+. .++++-|. .|+... +.... +..+.+++|
T Consensus 242 ~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~~~~~~~~~~~~~~~~w 317 (587)
T 3i2k_A 242 ERLGGLATPALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEATTMHKAF 317 (587)
T ss_dssp HHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCGGGSCCHHHHHHHHHHH
T ss_pred hhhccCCCCEEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCCccccccchhhHHHHHH
Confidence 789999999999999999876 457788999987664 36666554 465311 11111 334889999
Q ss_pred HHHHhC
Q 004149 766 FKKYCK 771 (771)
Q Consensus 766 l~~~l~ 771 (771)
|++|||
T Consensus 318 FD~~Lk 323 (587)
T 3i2k_A 318 FDRHLR 323 (587)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999997
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-18 Score=173.83 Aligned_cols=227 Identities=15% Similarity=0.189 Sum_probs=142.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+.+.... +.|+||++||.+.. ...|...+..|.++||.|+++|+||. |.+... .....
T Consensus 17 ~g~~l~~~~~g--------~~~~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~---G~S~~~-----~~~~~ 78 (309)
T 3u1t_A 17 EGATIAYVDEG--------SGQPVLFLHGNPTS--SYLWRNIIPYVVAAGYRAVAPDLIGM---GDSAKP-----DIEYR 78 (309)
T ss_dssp TTEEEEEEEEE--------CSSEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTS---TTSCCC-----SSCCC
T ss_pred CCeEEEEEEcC--------CCCEEEEECCCcch--hhhHHHHHHHHHhCCCEEEEEccCCC---CCCCCC-----CcccC
Confidence 56777655442 24789999997765 34677778887888999999999994 443221 11234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-----------------hcC
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----------------VGT 659 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-----------------~~~ 659 (771)
.+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|....... ...
T Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
T 3u1t_A 79 LQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRT 156 (309)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHHhc
Confidence 55666555555554 23478999999999999999999999999999998875432100 000
Q ss_pred CCCC------cchhhhhccCCCCCcCCCCCChhhHHHHh-----------------hc--------------CccccccC
Q 004149 660 TDIP------DWCYVESYGSKGKDSFTESPSVEDLTRFH-----------------SK--------------SPISHISK 702 (771)
Q Consensus 660 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------sp~~~~~~ 702 (771)
.... ...+...+.... ........+....+. .. +....+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (309)
T 3u1t_A 157 ADVGEKMVLDGNFFVETILPEM--GVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMA 234 (309)
T ss_dssp TTHHHHHHTTTCHHHHTHHHHT--SCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccccceehhhhcccc--cccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhccc
Confidence 0000 000000000000 000000011111110 00 11123567
Q ss_pred CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 703 i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++|+|+++|++|..+|++.++.+.+.+.. .++++++++||.+.. +...++.+.|.+||++..
T Consensus 235 i~~P~l~i~G~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 297 (309)
T 3u1t_A 235 SPIPKLLFHAEPGALAPKPVVDYLSENVPN----LEVRFVGAGTHFLQE-DHPHLIGQGIADWLRRNK 297 (309)
T ss_dssp CCSCEEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCHHH-HCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHhhCCC----CEEEEecCCcccchh-hCHHHHHHHHHHHHHhcc
Confidence 899999999999999999888888777654 677788999997653 455688899999998764
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-18 Score=171.19 Aligned_cols=217 Identities=14% Similarity=0.121 Sum_probs=132.3
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|+||++||.+.. ...|...+..|++ +||.|+++|+||.+ .+..... ...+++.+.+..+++.. .+.
T Consensus 21 ~~~vv~lhG~~~~--~~~~~~~~~~l~~~~g~~v~~~d~~G~G---~s~~~~~------~~~~~~~~~~~~~l~~~-~~~ 88 (272)
T 3fsg_A 21 GTPIIFLHGLSLD--KQSTCLFFEPLSNVGQYQRIYLDLPGMG---NSDPISP------STSDNVLETLIEAIEEI-IGA 88 (272)
T ss_dssp SSEEEEECCTTCC--HHHHHHHHTTSTTSTTSEEEEECCTTST---TCCCCSS------CSHHHHHHHHHHHHHHH-HTT
T ss_pred CCeEEEEeCCCCc--HHHHHHHHHHHhccCceEEEEecCCCCC---CCCCCCC------CCHHHHHHHHHHHHHHH-hCC
Confidence 4789999997654 3456666767766 79999999999944 3321111 23344333333333220 134
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC----CcC---CCCCChhhH
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK----DSF---TESPSVEDL 688 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~ 688 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|.....................+..... ..+ .........
T Consensus 89 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (272)
T 3fsg_A 89 RRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQAW 168 (272)
T ss_dssp CCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHHH
T ss_pred CcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCchh
Confidence 7899999999999999999999999999999988753221111100000000000000000 000 000000000
Q ss_pred H-------------------HHhh-----cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 689 T-------------------RFHS-----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 689 ~-------------------~~~~-----~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
. .+.. ..+...+.++++|+|+++|++|..+|++.+..+.+.+. +++++++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 244 (272)
T 3fsg_A 169 HDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVGYQEQLKLINHNE----NGEIVLLNR 244 (272)
T ss_dssp HHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTTCSHHHHHHHTTCT----TEEEEEESS
T ss_pred HHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcCCHHHHHHHHHhcC----CCeEEEecC
Confidence 0 0000 00111347789999999999999999998888776653 489999999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 745 DVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
++|.+.. +...++.+.+.+||++..
T Consensus 245 ~gH~~~~-~~~~~~~~~i~~fl~~~~ 269 (272)
T 3fsg_A 245 TGHNLMI-DQREAVGFHFDLFLDELN 269 (272)
T ss_dssp CCSSHHH-HTHHHHHHHHHHHHHHHH
T ss_pred CCCCchh-cCHHHHHHHHHHHHHHhh
Confidence 9998764 345678889999998753
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-18 Score=182.30 Aligned_cols=140 Identities=10% Similarity=0.031 Sum_probs=102.8
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC------------CCcch----HHHHHHHHCCcEEEEECCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS------------LSSYS----KSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~------------~~~~~----~~~~~la~~G~~V~~~d~r 575 (771)
.+...+|.++.++++.|++. .++.|+||++||.+.... ...|. ..+..|+++||+|+++|+|
T Consensus 91 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~~Vl~~D~r 168 (391)
T 3g8y_A 91 EFYPFPKSVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNA 168 (391)
T ss_dssp EECCSTTCCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTCEEEECCCT
T ss_pred EEEcCCCCEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCCEEEEecCC
Confidence 44556788999999999742 567899999999654321 00112 5678999999999999999
Q ss_pred CCCCCChhhhhcC----------------CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC
Q 004149 576 GSLGFGEEALQSL----------------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 576 G~~~~g~~~~~~~----------------~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
|.++.+....... ...+....+.|+.+++++|.+++.+|++||+|+||||||++++.++.. ++
T Consensus 169 g~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al~~a~~-~~ 247 (391)
T 3g8y_A 169 AAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVL-DK 247 (391)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHHHHHHH-CT
T ss_pred CccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHHHHHHc-CC
Confidence 9655432211000 001111223789999999999888999999999999999999998886 56
Q ss_pred ceeEEEecCCccchh
Q 004149 640 KFVAAAARNPLCNLA 654 (771)
Q Consensus 640 ~~~a~v~~~p~~~~~ 654 (771)
+++++|+.+++..+.
T Consensus 248 ~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 248 DIYAFVYNDFLCQTQ 262 (391)
T ss_dssp TCCEEEEESCBCCHH
T ss_pred ceeEEEEccCCCCcc
Confidence 789999888877664
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=170.15 Aligned_cols=216 Identities=18% Similarity=0.245 Sum_probs=133.2
Q ss_pred CcEEEEEcCCC-CCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 537 DPLIVVLHGGP-HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~-~~~~~~~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.|+||++||.+ +......|...+ ..|++. |.|+++|+|| +|.+... .. ....++++.+.+..+++. ++
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~---~~-~~~~~~~~a~dl~~~l~~--l~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPG---FNKSDAV---VM-DEQRGLVNARAVKGLMDA--LD 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTT---STTSCCC---CC-SSCHHHHHHHHHHHHHHH--TT
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCC---CCCCCCC---CC-cCcCHHHHHHHHHHHHHH--hC
Confidence 36899999964 222233566667 778765 9999999999 5544211 11 123455555555555554 24
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCC------------CCcchhh----hhccCCCCCc
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYV----ESYGSKGKDS 678 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~~ 678 (771)
.+++.|+||||||.+++.+|.++|++++++|+.+|............ .+.+... ..+... ...
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYD-QSL 181 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSC-GGG
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcC-Ccc
Confidence 57899999999999999999999999999999987542100000000 0000000 000000 000
Q ss_pred CCC----------CCChhhHHHHh---------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004149 679 FTE----------SPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 679 ~~~----------~~~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
... .........+. .......+.++++|+|+++|++|..+|++.++.+.+.+. ..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~----~~~~ 257 (286)
T 2puj_A 182 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARL 257 (286)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEE
T ss_pred CCHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCCccCHHHHHHHHHHCC----CCeE
Confidence 000 00000000000 112234567889999999999999999998888877664 3799
Q ss_pred EEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 740 IVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++++++||.... +...++.+.+.+||++
T Consensus 258 ~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 258 HVFSKCGAWAQW-EHADEFNRLVIDFLRH 285 (286)
T ss_dssp EEESSCCSCHHH-HTHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCccc-cCHHHHHHHHHHHHhc
Confidence 999999997653 3456788889999875
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-17 Score=162.90 Aligned_cols=228 Identities=15% Similarity=0.179 Sum_probs=136.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc-
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ- 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~- 595 (771)
+|..+++....+ ..|.||++||.+... ...|...+..|+++||.|+++|+||. |.+... ...+...
T Consensus 10 ~g~~l~~~~~g~-------~~~~vvllHG~~~~~-~~~~~~~~~~l~~~g~~vi~~D~~G~---G~S~~~--~~~~~~~~ 76 (254)
T 2ocg_A 10 NGVQLHYQQTGE-------GDHAVLLLPGMLGSG-ETDFGPQLKNLNKKLFTVVAWDPRGY---GHSRPP--DRDFPADF 76 (254)
T ss_dssp TTEEEEEEEEEC-------CSEEEEEECCTTCCH-HHHCHHHHHHSCTTTEEEEEECCTTS---TTCCSS--CCCCCTTH
T ss_pred CCEEEEEEEecC-------CCCeEEEECCCCCCC-ccchHHHHHHHhhCCCeEEEECCCCC---CCCCCC--CCCCChHH
Confidence 466666544321 236799999965431 23577788888889999999999994 443211 1111111
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-----hhcCCCCCcchhh--
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVGTTDIPDWCYV-- 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----~~~~~~~~~~~~~-- 668 (771)
..+++.++++.+.+. +.+++.|+||||||.+++.+|.++|++++++|+.++...... .........|...
T Consensus 77 ~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (254)
T 2ocg_A 77 FERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTR 153 (254)
T ss_dssp HHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHHHhH
Confidence 123334444444433 346899999999999999999999999999999887532110 0001111111000
Q ss_pred ----hhccCCCCCcCCCCCChhhHHHHhh----cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004149 669 ----ESYGSKGKDSFTESPSVEDLTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 669 ----~~~~~~~~~~~~~~~~~~~~~~~~~----~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
..++........ .........+.. ......+.++++|+|+++|++|.++|++.++.+.+.+.. .+++
T Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~ 228 (254)
T 2ocg_A 154 KPLEALYGYDYFARTC-EKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG----SRLH 228 (254)
T ss_dssp HHHHHHHCHHHHHHHH-HHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSTT----CEEE
T ss_pred HHHHHHhcchhhHHHH-HHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhCCC----CEEE
Confidence 000000000000 000000000000 012335678999999999999999999988888776653 6899
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 741 VFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
+++++||.... +...++.+.+.+||
T Consensus 229 ~~~~~gH~~~~-e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 229 LMPEGKHNLHL-RFADEFNKLAEDFL 253 (254)
T ss_dssp EETTCCTTHHH-HTHHHHHHHHHHHH
T ss_pred EcCCCCCchhh-hCHHHHHHHHHHHh
Confidence 99999998763 34556777888886
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=175.66 Aligned_cols=232 Identities=17% Similarity=0.166 Sum_probs=135.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++..+.+ +.+.|.||++||+++.. ..|...+..+++.||.|+++|+||. |.+.... .....
T Consensus 13 ~g~~l~~~~~g~-----~~~~~~vvllHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~---G~S~~~~----~~~~~ 78 (293)
T 1mtz_A 13 NGIYIYYKLCKA-----PEEKAKLMTMHGGPGMS--HDYLLSLRDMTKEGITVLFYDQFGC---GRSEEPD----QSKFT 78 (293)
T ss_dssp TTEEEEEEEECC-----SSCSEEEEEECCTTTCC--SGGGGGGGGGGGGTEEEEEECCTTS---TTSCCCC----GGGCS
T ss_pred CCEEEEEEEECC-----CCCCCeEEEEeCCCCcc--hhHHHHHHHHHhcCcEEEEecCCCC---ccCCCCC----CCccc
Confidence 456665554432 11237899999976542 2333334455688999999999994 4432111 11123
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-----CCCCcc------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDW------ 665 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-----~~~~~~------ 665 (771)
++++.+.+..+++.- .+.+++.|+||||||.+++.+|.++|++++++|+.+|.......... ...+..
T Consensus 79 ~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (293)
T 1mtz_A 79 IDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYRDAIK 157 (293)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 444444444443331 02358999999999999999999999999999999987653211000 000000
Q ss_pred -----------hhh---hhccCCCCCcCCCCCChhhHHH---------H---------------hhcCccccccCCCCcE
Q 004149 666 -----------CYV---ESYGSKGKDSFTESPSVEDLTR---------F---------------HSKSPISHISKVKTPT 707 (771)
Q Consensus 666 -----------~~~---~~~~~~~~~~~~~~~~~~~~~~---------~---------------~~~sp~~~~~~i~~P~ 707 (771)
.+. ..+...........+. ..... + ...+....+.++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 236 (293)
T 1mtz_A 158 KYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPP-EVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPT 236 (293)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCH-HHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGCCSCE
T ss_pred HhhccCCcChHHHHHHHHHHHHhhcccccCchH-HHHHhHhhhccchhhhhccCcceecccccccCCChhhhhccCCCCE
Confidence 000 0000000000000010 00000 0 0111223466789999
Q ss_pred EEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 708 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
|+++|++| .+++..++.+.+.+. ++++++++++||..... ...++.+.+.+||+++|
T Consensus 237 lii~G~~D-~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~~~l 293 (293)
T 1mtz_A 237 LITVGEYD-EVTPNVARVIHEKIA----GSELHVFRDCSHLTMWE-DREGYNKLLSDFILKHL 293 (293)
T ss_dssp EEEEETTC-SSCHHHHHHHHHHST----TCEEEEETTCCSCHHHH-SHHHHHHHHHHHHHTCC
T ss_pred EEEeeCCC-CCCHHHHHHHHHhCC----CceEEEeCCCCCCcccc-CHHHHHHHHHHHHHhcC
Confidence 99999999 677777777766654 37899999999986533 45678899999998764
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=172.34 Aligned_cols=227 Identities=17% Similarity=0.173 Sum_probs=139.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
++..++++...+ +..|+||++||++.. ...|...+..|++ ||.|+++|+||.+ |.+... .....
T Consensus 53 ~~~~~~~~~~g~------~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-g~~vi~~D~~G~g--G~s~~~-----~~~~~ 116 (306)
T 2r11_A 53 RFGQTHVIASGP------EDAPPLVLLHGALFS--STMWYPNIADWSS-KYRTYAVDIIGDK--NKSIPE-----NVSGT 116 (306)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTTC--GGGGTTTHHHHHH-HSEEEEECCTTSS--SSCEEC-----SCCCC
T ss_pred CCceEEEEeeCC------CCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCCCC--CCCCCC-----CCCCC
Confidence 445666555432 245889999997765 3457777788877 9999999999952 222110 11234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc------CCCC-Ccc--hh
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------TTDI-PDW--CY 667 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~------~~~~-~~~--~~ 667 (771)
.+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|......... .... ..+ .+
T Consensus 117 ~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (306)
T 2r11_A 117 RTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETF 194 (306)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHTTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhHHHHHHHHHHH
Confidence 55666666655554 2457899999999999999999999999999999999765311000 0000 000 00
Q ss_pred hhhccCCC-----------------CCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHH
Q 004149 668 VESYGSKG-----------------KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 668 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l 730 (771)
...+.... ...+..... .............+.++++|+|+++|++|..+|++.+.++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~ 272 (306)
T 2r11_A 195 LNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNP--NADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASSF 272 (306)
T ss_dssp HHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCC--CTTSSSCBCCHHHHHTCCSCEEEEEETTCCSSCHHHHHHHHHHH
T ss_pred HHHhhCCccccccccccccHHHHHHHHhhhhhhh--hccCCCCCCCHHHHhcCCCCEEEEEeCCCcccCHHHHHHHHHHH
Confidence 00000000 000000000 00000011223346788999999999999999988877665543
Q ss_pred HhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 731 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
. .+++++++++++|.+.. +...++.+.|.+||+
T Consensus 273 ~---~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 273 V---PDIEAEVIKNAGHVLSM-EQPTYVNERVMRFFN 305 (306)
T ss_dssp S---TTCEEEEETTCCTTHHH-HSHHHHHHHHHHHHC
T ss_pred C---CCCEEEEeCCCCCCCcc-cCHHHHHHHHHHHHh
Confidence 2 34799999999997653 334577788888875
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=170.13 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=141.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++..+.|. +.+.|+||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~g~~l~y~~~g~~----~~~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~~G---~G~S~~~~-----~~~~ 74 (266)
T 2xua_A 10 NGTELHYRIDGER----HGNAPWIVLSNSLGTD--LSMWAPQVAALSK-HFRVLRYDTRG---HGHSEAPK-----GPYT 74 (266)
T ss_dssp SSSEEEEEEESCS----SSCCCEEEEECCTTCC--GGGGGGGHHHHHT-TSEEEEECCTT---STTSCCCS-----SCCC
T ss_pred CCEEEEEEEcCCc----cCCCCeEEEecCccCC--HHHHHHHHHHHhc-CeEEEEecCCC---CCCCCCCC-----CCCC
Confidence 5677877766442 1125889999996654 4467777888865 59999999999 45443211 1223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh---hhc------CCCCCcc--
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---MVG------TTDIPDW-- 665 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~---~~~------~~~~~~~-- 665 (771)
++++.+.+..+++. +..+++.|+||||||.+++.+|.++|++++++|+.++...... +.. .......
T Consensus 75 ~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (266)
T 2xua_A 75 IEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHALAD 152 (266)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHHHH
Confidence 45555555444444 2346899999999999999999999999999999887542100 000 0000000
Q ss_pred hhhhhccCCC--------CCcC---CCCCChhh----HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHH
Q 004149 666 CYVESYGSKG--------KDSF---TESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 666 ~~~~~~~~~~--------~~~~---~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l 730 (771)
.....+.... ...+ ........ ...+...+....+.++++|+|+++|++|..+|++.++.+.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~ 232 (266)
T 2xua_A 153 AVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQAI 232 (266)
T ss_dssp HHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHS
T ss_pred HHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHHHHHHHhC
Confidence 0000000000 0000 00000000 0111122334457789999999999999999998888887776
Q ss_pred HhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 731 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
.. .++++++ +||.... +...++.+.+.+||++
T Consensus 233 ~~----~~~~~~~-~gH~~~~-e~p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 233 AG----ARYVELD-ASHISNI-ERADAFTKTVVDFLTE 264 (266)
T ss_dssp TT----CEEEEES-CCSSHHH-HTHHHHHHHHHHHHTC
T ss_pred CC----CEEEEec-CCCCchh-cCHHHHHHHHHHHHHh
Confidence 54 6899999 9998653 3355788889999863
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=178.07 Aligned_cols=246 Identities=13% Similarity=0.115 Sum_probs=147.9
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC----------C-cchHHH---HHHHHCCcEEEEECCCCCCC-----
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----------S-SYSKSL---AFLSSVGYSLLIVNYRGSLG----- 579 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~----------~-~~~~~~---~~la~~G~~V~~~d~rG~~~----- 579 (771)
.+|++..+-+. ...+.|+||++||.+.+... . .|...+ ..|...||.|+++|+||.|.
T Consensus 27 ~~i~y~~~g~~---~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~G~S~G~~ 103 (377)
T 3i1i_A 27 VQMGYETYGTL---NRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQVKNPH 103 (377)
T ss_dssp EEEEEEEESCC---CTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSCTTSTT
T ss_pred eeEEEEeeccc---CCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecccccccccCCC
Confidence 44555555433 23456899999997765322 0 134344 46667899999999997532
Q ss_pred ---CChhhhhcCCCC-----ccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEe-cCC
Q 004149 580 ---FGEEALQSLPGK-----VGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAA-RNP 649 (771)
Q Consensus 580 ---~g~~~~~~~~~~-----~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~-~~p 649 (771)
+|.+......+. +....++++.+.+..+++. ++.+++. |+||||||.+++.+|.++|++++++|+ .++
T Consensus 104 ~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 181 (377)
T 3i1i_A 104 VITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHMVERMIGVITN 181 (377)
T ss_dssp CCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTTBSEEEEESCC
T ss_pred cccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHHHHHhcccCcC
Confidence 111110000000 1133567777777777765 3456786 999999999999999999999999999 665
Q ss_pred ccchhhh-hc--------CCCCCcch-----------------------------hhhhccCCCCCc-----C-------
Q 004149 650 LCNLALM-VG--------TTDIPDWC-----------------------------YVESYGSKGKDS-----F------- 679 (771)
Q Consensus 650 ~~~~~~~-~~--------~~~~~~~~-----------------------------~~~~~~~~~~~~-----~------- 679 (771)
....... .. ....+.|. +...+....... +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (377)
T 3i1i_A 182 PQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEPYEKVSSLTSFE 261 (377)
T ss_dssp SBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGGGTCTTCCCHHH
T ss_pred CCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhccccccccccchhHHH
Confidence 5431000 00 00000000 000010000000 0
Q ss_pred ----------CCCCChhhH----HHHhhcC-------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 680 ----------TESPSVEDL----TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 680 ----------~~~~~~~~~----~~~~~~s-------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
......... ..+...+ ....+.++++|+|+++|++|.++|++.++.+++.+++.+.+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~g~~~~ 341 (377)
T 3i1i_A 262 KEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSNVEANVLMIPCKQDLLQPSRYNYKMVDLLQKQGKYAE 341 (377)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSEEEEECBTTCSSSCTHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhhCCCCEEEEecCCccccCHHHHHHHHHHHHhcCCCce
Confidence 000000000 0000011 1234678899999999999999999999999999988777899
Q ss_pred EEEeCC-CCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 739 VIVFPN-DVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 739 ~~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
++++++ +||...... ..++.+.|.+||++++
T Consensus 342 ~~~i~~~~gH~~~~e~-p~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 342 VYEIESINGHMAGVFD-IHLFEKKVYEFLNRKV 373 (377)
T ss_dssp ECCBCCTTGGGHHHHC-GGGTHHHHHHHHHSCC
T ss_pred EEEcCCCCCCcchhcC-HHHHHHHHHHHHHhhh
Confidence 999998 999765333 3578889999998765
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=172.00 Aligned_cols=236 Identities=17% Similarity=0.257 Sum_probs=137.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+|.++++....|.. +..+.+.||++||++.. ...|...+..|++ .||.|+++|+|| +|.+.... .......
T Consensus 36 ~g~~l~y~~~G~~~--~~~~g~plvllHG~~~~--~~~w~~~~~~l~~~~~~~Via~D~rG---~G~S~~~~-~~~~~~~ 107 (330)
T 3nwo_A 36 GDHETWVQVTTPEN--AQPHALPLIVLHGGPGM--AHNYVANIAALADETGRTVIHYDQVG---CGNSTHLP-DAPADFW 107 (330)
T ss_dssp TTEEEEEEEECCSS--CCTTCCCEEEECCTTTC--CSGGGGGGGGHHHHHTCCEEEECCTT---STTSCCCT-TSCGGGC
T ss_pred cCcEEEEEEecCcc--CCCCCCcEEEECCCCCC--chhHHHHHHHhccccCcEEEEECCCC---CCCCCCCC-CCccccc
Confidence 57778877776531 11112358899997765 3456666677765 699999999999 44442100 0011112
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh------------------
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------------ 657 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------------------ 657 (771)
..+++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++........
T Consensus 108 ~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (330)
T 3nwo_A 108 TPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLRAQLPAETRAAL 185 (330)
T ss_dssp CHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHHHHHHHHHHhcCHHHHHHH
Confidence 233333333333333 134689999999999999999999999999999888754321100
Q ss_pred ------cCCCCCcchh-hhhccCCCCCcCCCCCChhhHHH-------------------------HhhcCccccccCCCC
Q 004149 658 ------GTTDIPDWCY-VESYGSKGKDSFTESPSVEDLTR-------------------------FHSKSPISHISKVKT 705 (771)
Q Consensus 658 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~sp~~~~~~i~~ 705 (771)
.....+.+.. ...+...........+ ...... +...+....+.+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 264 (330)
T 3nwo_A 186 DRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTP-QDFADSVAQMEAEPTVYHTMNGPNEFHVVGTLGDWSVIDRLPDVTA 264 (330)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCC-HHHHHHHHHHHHSCHHHHHHTCSCSSSCCSGGGGCBCGGGGGGCCS
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhccccCCC-HHHHHHHHhhccchhhhhcccCchhhhhhccccCCchhhhcccCCC
Confidence 0000000000 0000000000000000 000000 011122345678899
Q ss_pred cEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 706 PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 706 P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
|+|+++|++|..+| ..+..+.+.+. ..++++++++||.... +...++.+.+.+||+++
T Consensus 265 P~Lvi~G~~D~~~p-~~~~~~~~~ip----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~FL~~~ 322 (330)
T 3nwo_A 265 PVLVIAGEHDEATP-KTWQPFVDHIP----DVRSHVFPGTSHCTHL-EKPEEFRAVVAQFLHQH 322 (330)
T ss_dssp CEEEEEETTCSSCH-HHHHHHHHHCS----SEEEEEETTCCTTHHH-HSHHHHHHHHHHHHHHH
T ss_pred CeEEEeeCCCccCh-HHHHHHHHhCC----CCcEEEeCCCCCchhh-cCHHHHHHHHHHHHHhc
Confidence 99999999999875 45555555443 4899999999997664 34568889999999875
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=168.48 Aligned_cols=210 Identities=17% Similarity=0.147 Sum_probs=136.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|..+++..+.|+ +.|+||++||.+.. ...|...+..|+++||.|+++|+||.+..... .....
T Consensus 10 ~~~g~~l~~~~~g~~------~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~------~~~~~ 75 (286)
T 3qit_A 10 EFGGNQICLCSWGSP------EHPVVLCIHGILEQ--GLAWQEVALPLAAQGYRVVAPDLFGHGRSSHL------EMVTS 75 (286)
T ss_dssp EETTEEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTSTTSCCC------SSGGG
T ss_pred ecCCceEEEeecCCC------CCCEEEEECCCCcc--cchHHHHHHHhhhcCeEEEEECCCCCCCCCCC------CCCCC
Confidence 346788888777543 35889999997765 44688889999999999999999995443211 11123
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh---------------c-
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------G- 658 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---------------~- 658 (771)
...+++.+.+..+++. ++.+++.++|||+||.+++.++.++|++++++|+.+|........ .
T Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (286)
T 3qit_A 76 YSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLSS 153 (286)
T ss_dssp CSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---CCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccchhhhHHHHHHHHHHhc
Confidence 3456666666666665 345789999999999999999999999999999999875432110 0
Q ss_pred CCC---CCcchhh-hhccCCCCCcCCCCCChhhHHHH---------------------------------hhcCcccccc
Q 004149 659 TTD---IPDWCYV-ESYGSKGKDSFTESPSVEDLTRF---------------------------------HSKSPISHIS 701 (771)
Q Consensus 659 ~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~sp~~~~~ 701 (771)
... ....... .... ... ..........+ ...+....+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (286)
T 3qit_A 154 TPQHPIFPDVATAASRLR----QAI-PSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGRSQYLEMLK 228 (286)
T ss_dssp CCCCCCBSSHHHHHHHHH----HHS-TTSCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTTHHHHHHHHHH
T ss_pred cccccccccHHHHHHHhh----cCC-cccCHHHHHHHhhccccccccceeeeechhhhccccccccccccchhHHHHHHh
Confidence 000 0000000 0000 000 00000000000 1111223456
Q ss_pred CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 702 ~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
++++|+|+++|++|..+|++....+.+.+.. ++++++++ ||.+.
T Consensus 229 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~g-gH~~~ 272 (286)
T 3qit_A 229 SIQVPTTLVYGDSSKLNRPEDLQQQKMTMTQ----AKRVFLSG-GHNLH 272 (286)
T ss_dssp HCCSCEEEEEETTCCSSCHHHHHHHHHHSTT----SEEEEESS-SSCHH
T ss_pred ccCCCeEEEEeCCCcccCHHHHHHHHHHCCC----CeEEEeeC-CchHh
Confidence 7899999999999999999988887776643 68999999 99765
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=172.08 Aligned_cols=214 Identities=13% Similarity=0.139 Sum_probs=134.0
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||++... ..|...+..|++ ||.|+++|+||.+. +.. .........+++.+.+..+++. ++.+
T Consensus 23 ~~~vv~~HG~~~~~--~~~~~~~~~L~~-~~~vi~~d~~G~G~---s~~---~~~~~~~~~~~~~~~~~~~~~~--l~~~ 91 (278)
T 3oos_A 23 GPPLCVTHLYSEYN--DNGNTFANPFTD-HYSVYLVNLKGCGN---SDS---AKNDSEYSMTETIKDLEAIREA--LYIN 91 (278)
T ss_dssp SSEEEECCSSEECC--TTCCTTTGGGGG-TSEEEEECCTTSTT---SCC---CSSGGGGSHHHHHHHHHHHHHH--TTCS
T ss_pred CCeEEEEcCCCcch--HHHHHHHHHhhc-CceEEEEcCCCCCC---CCC---CCCcccCcHHHHHHHHHHHHHH--hCCC
Confidence 47899999977653 346666777776 99999999999544 321 1111223466666666666665 2456
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCC-----Ccch----hhhhccCC-------------
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-----PDWC----YVESYGSK------------- 674 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~-----~~~~----~~~~~~~~------------- 674 (771)
++.|+|||+||.+++.++.++|++++++|+.+|............. .... ....+...
T Consensus 92 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (278)
T 3oos_A 92 KWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSRE 171 (278)
T ss_dssp CEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred eEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcccccCchHHHHHHHH
Confidence 8999999999999999999999999999999998762111100000 0000 00000000
Q ss_pred ----------CCCcCCCCC-----ChhhHHHHh-----hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 675 ----------GKDSFTESP-----SVEDLTRFH-----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 675 ----------~~~~~~~~~-----~~~~~~~~~-----~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
....+...+ .......+. ..+....+.++++|+|+++|++|..+|++.++.+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~--- 248 (278)
T 3oos_A 172 WALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHDVQCPYIFSCEIANLIP--- 248 (278)
T ss_dssp HHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHST---
T ss_pred HhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCCEEEEEeccCCCCCHHHHHHHHhhCC---
Confidence 000000000 001111111 223344567899999999999999999998888888764
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
++++++++++||.+.. +...++.+.+.+||
T Consensus 249 -~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl 278 (278)
T 3oos_A 249 -NATLTKFEESNHNPFV-EEIDKFNQFVNDTL 278 (278)
T ss_dssp -TEEEEEETTCSSCHHH-HSHHHHHHHHHHTC
T ss_pred -CcEEEEcCCcCCCccc-ccHHHHHHHHHhhC
Confidence 3899999999998653 23445555565553
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=170.35 Aligned_cols=227 Identities=16% Similarity=0.193 Sum_probs=137.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+|..+++... + ..|.||++||.+... ....|...+..| +.+|.|+++|+|| +|.+.... . ...
T Consensus 13 ~g~~l~y~~~------G--~g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G---~G~S~~~~---~-~~~ 76 (282)
T 1iup_A 13 AGVLTNYHDV------G--EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVG---FGFTDRPE---N-YNY 76 (282)
T ss_dssp TTEEEEEEEE------C--CSSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCCCT---T-CCC
T ss_pred CCEEEEEEec------C--CCCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCC---CCCCCCCC---C-CCC
Confidence 4666665433 1 236799999954321 112455566667 6789999999999 45442111 0 122
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-------hhhcCCCCCcchhh
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------LMVGTTDIPDWCYV 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-------~~~~~~~~~~~~~~ 668 (771)
.++++.+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|+.+|..... ..... .+.....
T Consensus 77 ~~~~~a~dl~~~l~~--l~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 152 (282)
T 1iup_A 77 SKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGY--TPSIENM 152 (282)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTC--CSCHHHH
T ss_pred CHHHHHHHHHHHHHH--hCCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcC--CCcHHHH
Confidence 355555555555554 234689999999999999999999999999999998754210 00000 0000000
Q ss_pred ----hhccCCC--C-----C-cC--CCCCCh-hhHHHHhh----------cCccccccCCCCcEEEEeeCCCCccCcHHH
Q 004149 669 ----ESYGSKG--K-----D-SF--TESPSV-EDLTRFHS----------KSPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 669 ----~~~~~~~--~-----~-~~--~~~~~~-~~~~~~~~----------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 723 (771)
..+.... . . .+ ...+.. .....+.. ......+.++++|+|+++|++|..+|++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~ 232 (282)
T 1iup_A 153 RNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSS 232 (282)
T ss_dssp HHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred HHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCCCHHHH
Confidence 0000000 0 0 00 000000 00000000 001145678999999999999999999988
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++.+.+.. .++++++++||.... +...++.+.+.+||++
T Consensus 233 ~~~~~~~~~----~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 233 LRLGELIDR----AQLHVFGRCGHWTQI-EQTDRFNRLVVEFFNE 272 (282)
T ss_dssp HHHHHHCTT----EEEEEESSCCSCHHH-HSHHHHHHHHHHHHHT
T ss_pred HHHHHhCCC----CeEEEECCCCCCccc-cCHHHHHHHHHHHHhc
Confidence 887776643 799999999998653 3456788899999975
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=168.31 Aligned_cols=219 Identities=11% Similarity=0.082 Sum_probs=138.7
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|+||++||.+.. ...|...+..|++ ||.|+++|+||.+.+... ... .......+++.+.+..+++.. +.++
T Consensus 29 ~~vv~lHG~~~~--~~~~~~~~~~l~~-g~~v~~~d~~G~G~s~~~---~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~ 99 (282)
T 3qvm_A 29 KTVLLAHGFGCD--QNMWRFMLPELEK-QFTVIVFDYVGSGQSDLE---SFS-TKRYSSLEGYAKDVEEILVAL--DLVN 99 (282)
T ss_dssp CEEEEECCTTCC--GGGGTTTHHHHHT-TSEEEECCCTTSTTSCGG---GCC-TTGGGSHHHHHHHHHHHHHHT--TCCS
T ss_pred CeEEEECCCCCC--cchHHHHHHHHhc-CceEEEEecCCCCCCCCC---CCC-ccccccHHHHHHHHHHHHHHc--CCCc
Confidence 899999997655 3467777888877 999999999995543322 110 011124556665565555552 4578
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC--CCCCc--ch-hhhhccC-------CCCCc-CCCCCC
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--TDIPD--WC-YVESYGS-------KGKDS-FTESPS 684 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--~~~~~--~~-~~~~~~~-------~~~~~-~~~~~~ 684 (771)
++|+|||+||.+++.++.++|++++++|+.+|.......... ..... .. ....... ..... +.....
T Consensus 100 ~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (282)
T 3qvm_A 100 VSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASHS 179 (282)
T ss_dssp EEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTSC
T ss_pred eEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCccc
Confidence 999999999999999999999999999999986532211000 00000 00 0000000 00000 000000
Q ss_pred hh-------------------hHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 685 VE-------------------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 685 ~~-------------------~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.. ........+....+.++++|+|+++|++|..+|++.+..+.+.+. ..++++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~ 255 (282)
T 3qvm_A 180 SELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIP----NSQLELIQAE 255 (282)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHSS----SEEEEEEEEE
T ss_pred hhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhCC----CCcEEEecCC
Confidence 00 001111223335577889999999999999999998888877764 3799999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHHHh
Q 004149 746 VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+|.+.. +...++.+.+.+||++..
T Consensus 256 gH~~~~-~~~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 256 GHCLHM-TDAGLITPLLIHFIQNNQ 279 (282)
T ss_dssp SSCHHH-HCHHHHHHHHHHHHHHC-
T ss_pred CCcccc-cCHHHHHHHHHHHHHhcC
Confidence 998654 345678899999998753
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=167.68 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=136.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~-~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+|..+++...-+ ...|+||++||.+ +......|...+..|++. |.|+++|+|| +|.+..... ..
T Consensus 14 ~~g~~l~y~~~g~------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~~----~~ 79 (285)
T 1c4x_A 14 SGTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIG---FGQSEYPET----YP 79 (285)
T ss_dssp CTTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTT---STTSCCCSS----CC
T ss_pred ECCEEEEEEecCC------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCC---CCCCCCCCC----cc
Confidence 3566676544321 1346799999964 222233566667777665 9999999999 444421110 01
Q ss_pred cchhhH----HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh--------hhhcCCCC
Q 004149 595 QDVNDV----LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA--------LMVGTTDI 662 (771)
Q Consensus 595 ~~~~D~----~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~--------~~~~~~~~ 662 (771)
..++++ .+.+..+++. .+.+++.|+||||||.+++.++.++|++++++|+.+|..... ........
T Consensus 80 ~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (285)
T 1c4x_A 80 GHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYAD 157 (285)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGS
T ss_pred cchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHHhcc
Confidence 234444 4444444443 234689999999999999999999999999999998754210 00000000
Q ss_pred CcchhhhhccCCCCCcCCCC--C------------ChhhHHHHhh------------cCccccccCCCCcEEEEeeCCCC
Q 004149 663 PDWCYVESYGSKGKDSFTES--P------------SVEDLTRFHS------------KSPISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~------------~sp~~~~~~i~~P~Lii~G~~D~ 716 (771)
+.......+........... . .......+.. ......+.++++|+|+++|++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~ 237 (285)
T 1c4x_A 158 PRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDR 237 (285)
T ss_dssp CCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCS
T ss_pred ccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEEEEEeCCCe
Confidence 00000000000000000000 0 0000000000 01223467889999999999999
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
.+|++.++.+++.+. +.++++++++||.... +...++.+.+.+||++
T Consensus 238 ~~p~~~~~~~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 238 IVPLDTSLYLTKHLK----HAELVVLDRCGHWAQL-ERWDAMGPMLMEHFRA 284 (285)
T ss_dssp SSCTHHHHHHHHHCS----SEEEEEESSCCSCHHH-HSHHHHHHHHHHHHHC
T ss_pred eeCHHHHHHHHHhCC----CceEEEeCCCCcchhh-cCHHHHHHHHHHHHhc
Confidence 999998888777654 4799999999998653 3456788889999864
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=167.08 Aligned_cols=220 Identities=11% Similarity=0.040 Sum_probs=137.4
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|++ ||.|+++|+||.+.+... ... ......++++.+.+..+++. ++.
T Consensus 19 ~~p~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~D~~G~G~S~~~---~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTD--QSAWNRILPFFLR-DYRVVLYDLVCAGSVNPD---FFD-FRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCC--GGGGTTTGGGGTT-TCEEEEECCTTSTTSCGG---GCC-TTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCc--HHHHHHHHHHHhC-CcEEEEEcCCCCCCCCCC---CCC-ccccCcHHHHHHHHHHHHHh--cCC
Confidence 45899999997655 3466677778877 999999999995443221 111 11112455555555555554 245
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcc----hhhhhccCC-------CCCcCCCCCC
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW----CYVESYGSK-------GKDSFTESPS 684 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~ 684 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|................ ......... ..........
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADV 169 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSSC
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCCC
Confidence 68999999999999999999999999999999986432110000000000 000000000 0000000000
Q ss_pred hh-------------------hHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 685 VE-------------------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 685 ~~-------------------~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.. ....+...+....+.++++|+|+++|++|..+|++.++.+.+.+.. .+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 246 (269)
T 4dnp_A 170 PAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGG---KNTVHWLNIE 246 (269)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHSSS---CEEEEEEEEE
T ss_pred hhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhCCC---CceEEEeCCC
Confidence 00 0111122344456778899999999999999999998888777643 2799999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004149 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+|.+.. +...++.+.+.+||++
T Consensus 247 gH~~~~-~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 247 GHLPHL-SAPTLLAQELRRALSH 268 (269)
T ss_dssp SSCHHH-HCHHHHHHHHHHHHC-
T ss_pred CCCccc-cCHHHHHHHHHHHHhh
Confidence 998653 3456778888888865
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=158.36 Aligned_cols=181 Identities=15% Similarity=0.073 Sum_probs=124.1
Q ss_pred CCcEEEEEcCCCCCCC-CCcchH-HHHHHHHC-CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 536 CDPLIVVLHGGPHSVS-LSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~-~~~~~~-~~~~la~~-G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+.|+||++||++.... ...|.. .+..|+++ ||.|+++|+||... .++...++.+.+...
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 4689999999776532 234555 67788777 99999999998311 123344455555422
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHh
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
. .+++.|+|||+||.+++.++.++| ++++|+.+|...... .. ..... ..+. .+.
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~--------~~--~~~~~----~~~~-~~~-------- 118 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLG--------DE--NERAS----GYFT-RPW-------- 118 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTT--------CH--HHHHT----STTS-SCC--------
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccc--------hh--hhHHH----hhhc-ccc--------
Confidence 2 278999999999999999999998 999999988753210 00 00000 0000 010
Q ss_pred hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 693 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 693 ~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
....+..+.+|+|+++|++|..+|++.++.+.+.+ . .++.++++++|.+.. +. .+.+..+++||++..
T Consensus 119 ---~~~~~~~~~~p~lii~G~~D~~vp~~~~~~~~~~~-~----~~~~~~~~~gH~~~~-~~-p~~~~~~~~fl~~~~ 186 (194)
T 2qs9_A 119 ---QWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRL-E----TKLHKFTDCGHFQNT-EF-HELITVVKSLLKVPA 186 (194)
T ss_dssp ---CHHHHHHHCSEEEEEEETTCSSSCHHHHHHHHHHH-T----CEEEEESSCTTSCSS-CC-HHHHHHHHHHHTCCC
T ss_pred ---cHHHHHhhCCCEEEEEeCCCCcCCHHHHHHHHHhc-C----CeEEEeCCCCCccch-hC-HHHHHHHHHHHHhhh
Confidence 11123345679999999999999999999998888 3 589999999998763 33 356677789997643
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-18 Score=171.52 Aligned_cols=217 Identities=15% Similarity=0.112 Sum_probs=141.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHH-HHHCC---cEEEEECCCCCCCCChhhh--hcCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF-LSSVG---YSLLIVNYRGSLGFGEEAL--QSLPG 590 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~-la~~G---~~V~~~d~rG~~~~g~~~~--~~~~~ 590 (771)
.|.++..++|.|+++.+.+++|+|+++||++.......+...... .++.| +.|+++|+++...++...+ ...+.
T Consensus 28 ~g~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~~~~~r~~~~~~~ 107 (275)
T 2qm0_A 28 EGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPS 107 (275)
T ss_dssp TCCEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSCCHHHHHHHHCSS
T ss_pred CCCEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcCcccccccccCCC
Confidence 578899999999988767889999999997531111112122222 24567 9999999998543321100 00000
Q ss_pred ----------------Ccc-ccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 591 ----------------KVG-SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 591 ----------------~~~-~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
..+ .....+.. +.+.++.++..+|+++++|+||||||++++.++.++|+.|+++++.+|.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~~f~~~~~~s~~~ 187 (275)
T 2qm0_A 108 VISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISSPSI 187 (275)
T ss_dssp CCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCT
T ss_pred CccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCchhhceeEEeCcee
Confidence 011 01222222 33445555555788999999999999999999999999999999999986
Q ss_pred chhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHH-
Q 004149 652 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL- 730 (771)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l- 730 (771)
.+.... +.. ..+.+.... ......+|++++||+.|..++..+++++++.|
T Consensus 188 ~~~~~~-------------~~~-------------~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~L~ 238 (275)
T 2qm0_A 188 WWNNKS-------------VLE-------------KEENLIIEL---NNAKFETGVFLTVGSLEREHMVVGANELSERLL 238 (275)
T ss_dssp THHHHG-------------GGG-------------GTTHHHHHH---HTCSSCEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred eeChHH-------------HHH-------------HHHHHHhhh---cccCCCceEEEEeCCcccchhhHHHHHHHHHHH
Confidence 432110 000 000010000 02345689999999999998999999999999
Q ss_pred --HhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 731 --REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 731 --~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
++.|+++++.++|+++|+.. ....+...+.||
T Consensus 239 ~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 239 QVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred hcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 55788999999999999643 233445566665
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=177.62 Aligned_cols=202 Identities=18% Similarity=0.122 Sum_probs=136.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh------hcCCCCc--
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL------QSLPGKV-- 592 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~------~~~~~~~-- 592 (771)
+.+....|.. ..++.|+||++||++.. ...|...++.|+++||.|+++|+||.+....... ......+
T Consensus 84 ~p~~~~~P~~--~~~~~P~Vv~~HG~~~~--~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~ 159 (383)
T 3d59_A 84 TPANWNSPLR--PGEKYPLVVFSHGLGAF--RTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLY 159 (383)
T ss_dssp ESSEETCCBC--CSSCEEEEEEECCTTCC--TTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEE
T ss_pred eccccCCCcc--cCCCCCEEEEcCCCCCC--chHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeee
Confidence 4334444432 34578999999997765 3467888999999999999999998544321000 0000000
Q ss_pred -----c-----------ccchhhHHHHHHHHHH--------------------cCCCCCCeEEEEEcChhHHHHHHHHHh
Q 004149 593 -----G-----------SQDVNDVLTAIDHVID--------------------MGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 593 -----~-----------~~~~~D~~~~i~~l~~--------------------~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
+ ....+|+..+++++.+ ...+|.+||+++|||+||.+++.++.+
T Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 239 (383)
T 3d59_A 160 LRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSE 239 (383)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred ccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhh
Confidence 1 0114688888998875 344678899999999999999999887
Q ss_pred CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCC
Q 004149 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 637 ~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~ 716 (771)
.+ +++++|+.+|... +.. ...+.++++|+|++||++|.
T Consensus 240 ~~-~v~a~v~~~~~~~------------------------------p~~-----------~~~~~~i~~P~Lii~g~~D~ 277 (383)
T 3d59_A 240 DQ-RFRCGIALDAWMF------------------------------PLG-----------DEVYSRIPQPLFFINSEYFQ 277 (383)
T ss_dssp CT-TCCEEEEESCCCT------------------------------TCC-----------GGGGGSCCSCEEEEEETTTC
T ss_pred CC-CccEEEEeCCccC------------------------------CCc-----------hhhhccCCCCEEEEeccccc
Confidence 55 6999998877421 000 01135678999999999998
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC------------------CCCh----HHHHHHHHHHHHHHhC
Q 004149 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIER------------------PQSD----FESFLNIGLWFKKYCK 771 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~------------------~~~~----~~~~~~i~~wl~~~l~ 771 (771)
.+ .. .+..+.+.+.+.+.+++++++++|.+.. .... ..+.+.+++||+++|+
T Consensus 278 ~~--~~-~~~~~~l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~ 351 (383)
T 3d59_A 278 YP--AN-IIKMKKCYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLG 351 (383)
T ss_dssp CH--HH-HHHHHTTCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ch--hh-HHHHHHHHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcC
Confidence 54 22 2333556666778999999999998631 1112 2233469999999985
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=169.28 Aligned_cols=213 Identities=17% Similarity=0.222 Sum_probs=129.1
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
+.||++||.+.. ...|...+..|+++||.|+++|+||. |.+.... .....+++.+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G~---G~S~~~~-----~~~~~~~~~~dl~~~l~~--l~~~~ 91 (279)
T 1hkh_A 24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRGF---GGSSKVN-----TGYDYDTFAADLHTVLET--LDLRD 91 (279)
T ss_dssp EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTS---TTSCCCS-----SCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CcEEEEcCCCch--hhHHhhhHHHHHhCCcEEEEeCCCCC---CCCCCCC-----CCCCHHHHHHHHHHHHHh--cCCCc
Confidence 459999997655 45788889999999999999999994 4442111 112333433333333333 23468
Q ss_pred EEEEEcChhHHHHHHHHHhCCC-ceeEEEecCCccchhhhhcC-C-CCCcch--------------hhhhccCCCCCc--
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMVGT-T-DIPDWC--------------YVESYGSKGKDS-- 678 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~~~~-~-~~~~~~--------------~~~~~~~~~~~~-- 678 (771)
+.|+||||||.+++.++.++|+ +++++|+.++.......... . ..+... ....+.......
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T 1hkh_A 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDE 171 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHH
T ss_pred eEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhccc
Confidence 9999999999999999999998 99999998874321100000 0 000000 000000000000
Q ss_pred -CCCCCChhhHHHH------------------hhcCccccccCC---CCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCC
Q 004149 679 -FTESPSVEDLTRF------------------HSKSPISHISKV---KTPTIFLLGAQDLRVPVSNG-LQYARALREKGV 735 (771)
Q Consensus 679 -~~~~~~~~~~~~~------------------~~~sp~~~~~~i---~~P~Lii~G~~D~~vp~~~~-~~~~~~l~~~g~ 735 (771)
.......+....+ ...+....+.++ ++|+|+++|++|..+|++.+ +.+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~---- 247 (279)
T 1hkh_A 172 NLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP---- 247 (279)
T ss_dssp HBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT----
T ss_pred CCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCChHHHHHHHHHhCC----
Confidence 0000000100000 011112235567 89999999999999998877 66666554
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.+++++++++|.+.. +...++.+.+.+||+
T Consensus 248 ~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 248 EADYVEVEGAPHGLLW-THADEVNAALKTFLA 278 (279)
T ss_dssp TSEEEEETTCCTTHHH-HTHHHHHHHHHHHHH
T ss_pred CeeEEEeCCCCccchh-cCHHHHHHHHHHHhh
Confidence 3789999999998753 345678888888885
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=168.11 Aligned_cols=231 Identities=17% Similarity=0.190 Sum_probs=137.8
Q ss_pred CC-ceEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 517 AQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 517 ~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~-~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+| ..+++...- .++.|.||++||.+ +......|...+..|++. |.|+++|+|| +|.+.... . ..
T Consensus 21 ~g~~~l~y~~~G------~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~~---~-~~ 86 (291)
T 2wue_A 21 DGPLKLHYHEAG------VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPG---YGHSDKRA---E-HG 86 (291)
T ss_dssp SSEEEEEEEEEC------TTCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTT---STTSCCCS---C-CS
T ss_pred CCcEEEEEEecC------CCCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCC---CCCCCCCC---C-CC
Confidence 56 677655432 22346899999964 222233566677778665 9999999999 45442111 1 12
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC--C----------CC
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--T----------DI 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--~----------~~ 662 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.+|.......... . ..
T Consensus 87 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
T 2wue_A 87 QFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFSVA 164 (291)
T ss_dssp SHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHhcc
Confidence 3455555555444443 23468999999999999999999999999999999875421000000 0 00
Q ss_pred CcchhhhhccCCCCCcCCCC------------CChhhHHHHhh-----cC-----cc--ccccCCCCcEEEEeeCCCCcc
Q 004149 663 PDWCYVESYGSKGKDSFTES------------PSVEDLTRFHS-----KS-----PI--SHISKVKTPTIFLLGAQDLRV 718 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-----~s-----p~--~~~~~i~~P~Lii~G~~D~~v 718 (771)
+.+.....+........... ........+.. .+ .. ..+.++++|+|+++|++|..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 244 (291)
T 2wue_A 165 PTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVN 244 (291)
T ss_dssp CCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSCEEEEEETTCSSS
T ss_pred CCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCCeEEEecCCCCCC
Confidence 00000000000000000000 00000000100 00 11 456788999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 719 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 719 p~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
|++.++.+.+.+. ..++++++++||.... +...++.+.+.+||++
T Consensus 245 ~~~~~~~~~~~~p----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 289 (291)
T 2wue_A 245 PLDGALVALKTIP----RAQLHVFGQCGHWVQV-EKFDEFNKLTIEFLGG 289 (291)
T ss_dssp CGGGGHHHHHHST----TEEEEEESSCCSCHHH-HTHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCC----CCeEEEeCCCCCChhh-hCHHHHHHHHHHHHhc
Confidence 9998888777664 3799999999997653 3455778888888854
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=165.84 Aligned_cols=215 Identities=17% Similarity=0.147 Sum_probs=127.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.+ ...|...+..|++. |.|+++|+|| +|.+... . ...++++.+.+..+++. .+.
T Consensus 15 ~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~--~----~~~~~~~a~dl~~~l~~--l~~ 80 (255)
T 3bf7_A 15 NNSPIVLVHGLFGS--LDNLGVLARDLVND-HNIIQVDVRN---HGLSPRE--P----VMNYPAMAQDLVDTLDA--LQI 80 (255)
T ss_dssp CCCCEEEECCTTCC--TTTTHHHHHHHTTT-SCEEEECCTT---STTSCCC--S----CCCHHHHHHHHHHHHHH--HTC
T ss_pred CCCCEEEEcCCccc--HhHHHHHHHHHHhh-CcEEEecCCC---CCCCCCC--C----CcCHHHHHHHHHHHHHH--cCC
Confidence 34779999997765 45688888888765 9999999999 4444221 1 12233333333333332 134
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc--cch----hhh----h--cCCCCCcchhhh-hccCCCC------
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL--CNL----ALM----V--GTTDIPDWCYVE-SYGSKGK------ 676 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~--~~~----~~~----~--~~~~~~~~~~~~-~~~~~~~------ 676 (771)
+++.|+||||||.+++.++.++|++++++|+.++. ... ... . ............ .+.....
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ 160 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHHH
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHHH
Confidence 68999999999999999999999999999986532 110 000 0 000000000000 0000000
Q ss_pred ---CcCC-C--CCChhhHH-HHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 677 ---DSFT-E--SPSVEDLT-RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 677 ---~~~~-~--~~~~~~~~-~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
..+. . ........ .+........+.++++|+|+++|++|..++++.++.+.+.+. ..++++++++||.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~ 236 (255)
T 3bf7_A 161 FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFP----QARAHVIAGAGHWV 236 (255)
T ss_dssp HHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTCGGGHHHHHHHCT----TEEECCBTTCCSCH
T ss_pred HHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCCHHHHHHHHHHCC----CCeEEEeCCCCCcc
Confidence 0000 0 00000000 000000001256789999999999999999988877766654 38999999999986
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q 004149 750 ERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl~~~ 769 (771)
... ....+.+.+.+|+++|
T Consensus 237 ~~e-~p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 237 HAE-KPDAVLRAIRRYLNDH 255 (255)
T ss_dssp HHH-CHHHHHHHHHHHHHTC
T ss_pred ccC-CHHHHHHHHHHHHhcC
Confidence 533 3467888999999764
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=171.10 Aligned_cols=230 Identities=16% Similarity=0.179 Sum_probs=138.7
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
..+++...-|. .+.|.||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... .......++
T Consensus 34 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~~---~~~~~y~~~ 100 (310)
T 1b6g_A 34 LRAHYLDEGNS-----DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDKP---VDEEDYTFE 100 (310)
T ss_dssp CEEEEEEEECT-----TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEE---SCGGGCCHH
T ss_pred eEEEEEEeCCC-----CCCCEEEEECCCCCc--hhhHHHHHHHHHhCCCeEEEeCCCC---CCCCCCC---CCcCCcCHH
Confidence 77876665442 114789999997765 4477788899999999999999999 5554321 111122344
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc--hhh---h---hcCCCC--Ccchhh
Q 004149 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN--LAL---M---VGTTDI--PDWCYV 668 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~--~~~---~---~~~~~~--~~~~~~ 668 (771)
++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++... ... + ...... ..|...
T Consensus 101 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (310)
T 1b6g_A 101 FHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTAWKYD 178 (310)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHHHHHHHH
Confidence 444444444443 1346899999999999999999999999999999887441 000 0 000000 000000
Q ss_pred hhccC------------CCC-----CcCC-CCCChh---hHHHHhh--c-----------Ccccccc-CCCCcEEEEeeC
Q 004149 669 ESYGS------------KGK-----DSFT-ESPSVE---DLTRFHS--K-----------SPISHIS-KVKTPTIFLLGA 713 (771)
Q Consensus 669 ~~~~~------------~~~-----~~~~-~~~~~~---~~~~~~~--~-----------sp~~~~~-~i~~P~Lii~G~ 713 (771)
..... ... ..+. ...... ....+.. . .....+. ++++|+|+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~ 258 (310)
T 1b6g_A 179 LVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQTFMAIGM 258 (310)
T ss_dssp HHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEEEEEET
T ss_pred hccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCceEEEecc
Confidence 00000 000 0000 000000 0000000 0 0112356 899999999999
Q ss_pred CCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 714 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 714 ~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+|..+| +.++.+.+.+.+. ....++++++||.... ...++.+.+.+||++
T Consensus 259 ~D~~~~-~~~~~~~~~ip~~--~~~~i~~~~~GH~~~~--~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 259 KDKLLG-PDVMYPMKALING--CPEPLEIADAGHFVQE--FGEQVAREALKHFAE 308 (310)
T ss_dssp TCSSSS-HHHHHHHHHHSTT--CCCCEEETTCCSCGGG--GHHHHHHHHHHHHHH
T ss_pred Ccchhh-hHHHHHHHhcccc--cceeeecCCcccchhh--ChHHHHHHHHHHHhc
Confidence 999999 8888887777542 2333334999998775 566888999999975
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=177.59 Aligned_cols=137 Identities=17% Similarity=0.124 Sum_probs=91.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---------CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---------SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~---------~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~ 588 (771)
...+.++++.|.+..+.++.|+||++||++..... ..+...+..|+++||.|+++|+||.+.++.......
T Consensus 60 ~~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~~~~~~ 139 (397)
T 3h2g_A 60 PATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHPYL 139 (397)
T ss_dssp EEEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEECCTTSTTCCCSSCCTT
T ss_pred eEEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEecCCCCCCCCCCccchh
Confidence 35689999999865556789999999997765431 125667888899999999999999655422110000
Q ss_pred CCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHh-CC----C-ceeEEEecCCccchh
Q 004149 589 PGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ-AP----D-KFVAAAARNPLCNLA 654 (771)
Q Consensus 589 ~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~-~p----~-~~~a~v~~~p~~~~~ 654 (771)
........+.|..+++..+.++ +..++++|+|+||||||++++.++.. .+ + .+.+++..++..++.
T Consensus 140 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (397)
T 3h2g_A 140 HSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASAPISGPYALE 212 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEEEESCCSSHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEecccccccHH
Confidence 0000012345555555555554 33346899999999999999888632 22 2 578888888877764
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-17 Score=161.26 Aligned_cols=208 Identities=12% Similarity=0.191 Sum_probs=129.4
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHH------H
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI------D 609 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~------~ 609 (771)
+.|+||++||.+.. ...|. .+..|+ +||.|+++|+||.+... .......+++.+.+..++ +
T Consensus 15 ~~~~vv~~hG~~~~--~~~~~-~~~~l~-~g~~v~~~d~~g~g~s~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 3e0x_A 15 SPNTLLFVHGSGCN--LKIFG-ELEKYL-EDYNCILLDLKGHGESK---------GQCPSTVYGYIDNVANFITNSEVTK 81 (245)
T ss_dssp CSCEEEEECCTTCC--GGGGT-TGGGGC-TTSEEEEECCTTSTTCC---------SCCCSSHHHHHHHHHHHHHHCTTTT
T ss_pred CCCEEEEEeCCccc--HHHHH-HHHHHH-hCCEEEEecCCCCCCCC---------CCCCcCHHHHHHHHHHHHHhhhhHh
Confidence 46899999997765 33455 555665 89999999999954432 111223555555555554 3
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHHh-CCCceeEEEecCCccchhhhh-------cCCCCCcchhhhhccCC-------
Q 004149 610 MGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMV-------GTTDIPDWCYVESYGSK------- 674 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~-------~~~~~~~~~~~~~~~~~------- 674 (771)
. ++ ++.|+|||+||.+++.++.+ +|+ ++++|+.+|........ .......+.........
T Consensus 82 ~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (245)
T 3e0x_A 82 H--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEK 156 (245)
T ss_dssp T--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHHH
T ss_pred h--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHHH
Confidence 3 33 89999999999999999999 999 99999999976541100 00000000000000000
Q ss_pred CCCcCCCCCC--hhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 675 GKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 675 ~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....+...+. ..........+....+.++++|+|+++|++|..+|++.++.+.+.+. +++++++++++|.+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~ 232 (245)
T 3e0x_A 157 YFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLVV 232 (245)
T ss_dssp HHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEESSCGGGHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEeCCCCcceEEe
Confidence 0000000000 01111223344555678899999999999999999998888877764 38999999999986532
Q ss_pred CChHHHHHHHHHHH
Q 004149 753 QSDFESFLNIGLWF 766 (771)
Q Consensus 753 ~~~~~~~~~i~~wl 766 (771)
...++.+.+.+||
T Consensus 233 -~~~~~~~~i~~fl 245 (245)
T 3e0x_A 233 -NAKGVAEEIKNFI 245 (245)
T ss_dssp -THHHHHHHHHTTC
T ss_pred -cHHHHHHHHHhhC
Confidence 3445555555553
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-17 Score=167.11 Aligned_cols=216 Identities=15% Similarity=0.189 Sum_probs=136.4
Q ss_pred CCcEEEEEcCCCCCCCCCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+.|+||++||.+.. ...|. ..+..|++.||.|+++|+|| +|.+... .....+++.+.+..+++. ++
T Consensus 42 ~~~~vv~lHG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~~------~~~~~~~~~~~~~~~l~~--l~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGA--GRTWHPHQVPAFLAAGYRCITFDNRG---IGATENA------EGFTTQTMVADTAALIET--LD 108 (293)
T ss_dssp SSEEEEEECCTTCC--GGGGTTTTHHHHHHTTEEEEEECCTT---SGGGTTC------CSCCHHHHHHHHHHHHHH--HT
T ss_pred CCCEEEEECCCCCc--hhhcchhhhhhHhhcCCeEEEEccCC---CCCCCCc------ccCCHHHHHHHHHHHHHh--cC
Confidence 45889999997765 34565 56778889999999999999 4544211 112345555444444443 23
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc------------CCCCC-cchh----hhhccCCC--
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------------TTDIP-DWCY----VESYGSKG-- 675 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~------------~~~~~-~~~~----~~~~~~~~-- 675 (771)
.+++.|+|||+||.+++.++.++|++++++|+.+|......... ....+ .+.. ...+....
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLN 188 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHT
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhccccccc
Confidence 46899999999999999999999999999999998754211100 00000 0000 00000000
Q ss_pred -----------CCcCCCCCChhhHHH---HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 676 -----------KDSFTESPSVEDLTR---FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 676 -----------~~~~~~~~~~~~~~~---~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
............... ....+....+.++++|+|+++|++|..+|++.++.+.+.+.+ +++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~----~~~~~ 264 (293)
T 3hss_A 189 DDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALPN----GRYLQ 264 (293)
T ss_dssp CHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHSTT----EEEEE
T ss_pred ccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHHCCC----ceEEE
Confidence 000000000000000 111223345678899999999999999999988888777643 79999
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++++||.+.. +...++.+.+.+||++.
T Consensus 265 ~~~~gH~~~~-~~p~~~~~~i~~fl~~~ 291 (293)
T 3hss_A 265 IPDAGHLGFF-ERPEAVNTAMLKFFASV 291 (293)
T ss_dssp ETTCCTTHHH-HSHHHHHHHHHHHHHTC
T ss_pred eCCCcchHhh-hCHHHHHHHHHHHHHhc
Confidence 9999998653 34457888899998753
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-17 Score=165.16 Aligned_cols=214 Identities=14% Similarity=0.191 Sum_probs=130.4
Q ss_pred cEEEEEcCCCC-CCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 538 PLIVVLHGGPH-SVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 538 p~vv~~HGg~~-~~~~~~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
|+||++||.+. ......|...+ ..|++ +|.|+++|+||. |.+.... ......+++.+.+..+.+. .+.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~-~~~vi~~D~~G~---G~S~~~~----~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPGW---GKSDSVV----NSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHT-TCEEEEECCTTS---TTSCCCC----CSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhc-CCeEEEEcCCCC---CCCCCCC----ccccCHHHHHHHHHHHHHH--hCC
Confidence 38999999642 22233455566 66765 499999999994 4442111 1123456666666666554 245
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCC------------CCcchhhhhccCCCCCcCCCCC
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
+++.|+||||||.+++.++.++|++++++|+.+|............ .+.+.....+....... ....
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 185 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFD-TSDL 185 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSC-TTSC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcC-cccC
Confidence 7899999999999999999999999999999887542100000000 00000000000000000 0000
Q ss_pred Chh--------------hHHHHh---------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004149 684 SVE--------------DLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 684 ~~~--------------~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
..+ ....+. ..+....+.++++|+|+++|++|..+|++.++.+.+.+.. .+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~ 261 (289)
T 1u2e_A 186 TDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAG----SELH 261 (289)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSTT----CEEE
T ss_pred CHHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCccCHHHHHHHHhhCCC----cEEE
Confidence 000 000000 0112245678899999999999999999998888777643 6899
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 741 VFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+++++||..... ...++.+.+.+||+
T Consensus 262 ~i~~~gH~~~~e-~p~~~~~~i~~fl~ 287 (289)
T 1u2e_A 262 IFRDCGHWAQWE-HADAFNQLVLNFLA 287 (289)
T ss_dssp EESSCCSCHHHH-THHHHHHHHHHHHT
T ss_pred EeCCCCCchhhc-CHHHHHHHHHHHhc
Confidence 999999986533 35577788888885
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=164.66 Aligned_cols=234 Identities=11% Similarity=0.122 Sum_probs=135.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.-+|.++++.... +.|+||++||.+.. ...|...+..|++ ||.|+++|+||.+ .+...........
T Consensus 19 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~v~~~D~~G~G---~S~~~~~~~~~~~ 84 (306)
T 3r40_A 19 NTSSGRIFARVGG--------DGPPLLLLHGFPQT--HVMWHRVAPKLAE-RFKVIVADLPGYG---WSDMPESDEQHTP 84 (306)
T ss_dssp CCTTCCEEEEEEE--------CSSEEEEECCTTCC--GGGGGGTHHHHHT-TSEEEEECCTTST---TSCCCCCCTTCGG
T ss_pred EeCCEEEEEEEcC--------CCCeEEEECCCCCC--HHHHHHHHHHhcc-CCeEEEeCCCCCC---CCCCCCCCcccCC
Confidence 3467777765542 34789999997765 3467778888877 9999999999944 4322111111113
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC--------------
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------------- 660 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-------------- 660 (771)
...+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|...........
T Consensus 85 ~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (306)
T 3r40_A 85 YTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMNRAYALKIYHWSFLA 162 (306)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHHHHHCSHHHHHHSTHHHHHT
T ss_pred CCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccchhhhhhhhhhhhHHHHHhh
Confidence 3456666666666655 345689999999999999999999999999999999754321110000
Q ss_pred CC---C-------cchhhhhccCCCCCc-CCCCCChhhHHHHhh--cC------------------------ccccccCC
Q 004149 661 DI---P-------DWCYVESYGSKGKDS-FTESPSVEDLTRFHS--KS------------------------PISHISKV 703 (771)
Q Consensus 661 ~~---~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~s------------------------p~~~~~~i 703 (771)
.. . ...+...+....... .......+....+.. .. ....+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 242 (306)
T 3r40_A 163 QPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRAGAYADFEHDKIDVEAGNKI 242 (306)
T ss_dssp SCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCB
T ss_pred cccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHhcccccchhhhhhhhhccCC
Confidence 00 0 000000000000000 000011111111110 00 00135788
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++|+|+++|++|.++|+....+.++.+. .++++.++ ++||.+. .+...++.+.|.+||++.
T Consensus 243 ~~P~lii~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~-~~gH~~~-~e~p~~~~~~i~~fl~~~ 303 (306)
T 3r40_A 243 PVPMLALWGASGIAQSAATPLDVWRKWA---SDVQGAPI-ESGHFLP-EEAPDQTAEALVRFFSAA 303 (306)
T ss_dssp CSCEEEEEETTCC------CHHHHHHHB---SSEEEEEE-SSCSCHH-HHSHHHHHHHHHHHHHC-
T ss_pred CcceEEEEecCCcccCchhHHHHHHhhc---CCCeEEEe-cCCcCch-hhChHHHHHHHHHHHHhc
Confidence 9999999999999998555444444432 34777788 7899765 344567889999999764
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=166.64 Aligned_cols=229 Identities=17% Similarity=0.149 Sum_probs=136.7
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
..+++...-|. ...|.||++||.+.. ...|...+..|++.||.|+++|+|| +|.+... .......++
T Consensus 33 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~~---~~~~~~~~~ 99 (297)
T 2xt0_A 33 LRMHYVDEGPR-----DAEHTFLCLHGEPSW--SFLYRKMLPVFTAAGGRVVAPDLFG---FGRSDKP---TDDAVYTFG 99 (297)
T ss_dssp CCEEEEEESCT-----TCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEE---SCGGGCCHH
T ss_pred eEEEEEEccCC-----CCCCeEEEECCCCCc--ceeHHHHHHHHHhCCcEEEEeCCCC---CCCCCCC---CCcccCCHH
Confidence 77876655432 114789999997754 4567788899999999999999999 5544311 111122344
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-----------hhc-CCCCCcch
Q 004149 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----------MVG-TTDIPDWC 666 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----------~~~-~~~~~~~~ 666 (771)
++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++...... ... ........
T Consensus 100 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (297)
T 2xt0_A 100 FHRRSLLAFLDA--LQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANSPDLDVGK 177 (297)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHHHHHHHHHTCTTCCHHH
T ss_pred HHHHHHHHHHHH--hCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHHHHHHHhhcccccchhH
Confidence 444444444443 1346899999999999999999999999999999887431000 000 00000000
Q ss_pred hhhhccCCC----CCcCC-CCCCh---hhHHHHhhc--------------Ccccccc-CCCCcEEEEeeCCCCccCcHHH
Q 004149 667 YVESYGSKG----KDSFT-ESPSV---EDLTRFHSK--------------SPISHIS-KVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 667 ~~~~~~~~~----~~~~~-~~~~~---~~~~~~~~~--------------sp~~~~~-~i~~P~Lii~G~~D~~vp~~~~ 723 (771)
......... ...+. ..... .....+... .....+. ++++|+|+++|++|..+| ..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~~D~~~~-~~~ 256 (297)
T 2xt0_A 178 LMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDPVLG-PEV 256 (297)
T ss_dssp HHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCEEEEEETTCSSSS-HHH
T ss_pred HHhccCccCCHHHHHHHhccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCeEEEEeCCCcccC-hHH
Confidence 000000000 00000 00000 000011000 0112356 899999999999999999 778
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+.+.+... ....+.++++||.... ...++.+.|.+||+
T Consensus 257 ~~~~~~~p~~--~~~~~~~~~~GH~~~~--~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 257 MGMLRQAIRG--CPEPMIVEAGGHFVQE--HGEPIARAALAAFG 296 (297)
T ss_dssp HHHHHHHSTT--CCCCEEETTCCSSGGG--GCHHHHHHHHHHTT
T ss_pred HHHHHhCCCC--eeEEeccCCCCcCccc--CHHHHHHHHHHHHh
Confidence 8887776542 3344457899998775 45688888888874
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=178.38 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=102.9
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC------------CCcch----HHHHHHHHCCcEEEEECCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS------------LSSYS----KSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~------------~~~~~----~~~~~la~~G~~V~~~d~r 575 (771)
.+...+|.++.++++.|++. .++.|+||++||++.... ...|. ..++.|+++||+|+++|+|
T Consensus 96 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy~Vl~~D~r 173 (398)
T 3nuz_A 96 EFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIAVAVDNP 173 (398)
T ss_dssp EECCSTTBCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTCEEEEECCT
T ss_pred EEEcCCCcEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCCEEEEecCC
Confidence 45566789999999999842 567899999999765321 01122 4778999999999999999
Q ss_pred CCCCCChhhhhc----------------CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC
Q 004149 576 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 576 G~~~~g~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
|.++.+...... .........+.|+.+++++|.+++.+|++||+|+||||||++++.+++.. +
T Consensus 174 G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a~~~aa~~-~ 252 (398)
T 3nuz_A 174 AAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLD-T 252 (398)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHHHHHHHHC-T
T ss_pred CCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHHHHHHhcC-C
Confidence 965543222100 11122223457999999999998888999999999999999999888874 5
Q ss_pred ceeEEEecCCccchh
Q 004149 640 KFVAAAARNPLCNLA 654 (771)
Q Consensus 640 ~~~a~v~~~p~~~~~ 654 (771)
+++++|+.+++..+.
T Consensus 253 ~i~a~v~~~~~~~~~ 267 (398)
T 3nuz_A 253 SIYAFVYNDFLCQTQ 267 (398)
T ss_dssp TCCEEEEESCBCCHH
T ss_pred cEEEEEEecccccch
Confidence 788888877665543
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=171.33 Aligned_cols=246 Identities=13% Similarity=0.112 Sum_probs=146.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-------cchHHHH---HHHHCCcEEEEECCCC-CCCCChhhh
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-------SYSKSLA---FLSSVGYSLLIVNYRG-SLGFGEEAL 585 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-------~~~~~~~---~la~~G~~V~~~d~rG-~~~~g~~~~ 585 (771)
+|..+.+..+.++ ...+.|+||++||.+...... .|...+. .|++.||.|+++|+|| .++......
T Consensus 42 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~ 118 (377)
T 2b61_A 42 SYINVAYQTYGTL---NDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSS 118 (377)
T ss_dssp CSEEEEEEEESCC---CTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTS
T ss_pred cceeEEEEecccc---cccCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcc
Confidence 4566665555433 222358999999977664320 1555543 3667899999999999 444322110
Q ss_pred -hcC-C----CCccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh---
Q 004149 586 -QSL-P----GKVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--- 655 (771)
Q Consensus 586 -~~~-~----~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--- 655 (771)
... . ..+....++++.+.+..+++. ++.+++. |+||||||.+++.+|.++|++++++|+.+|......
T Consensus 119 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 196 (377)
T 2b61_A 119 INPQTGKPYGSQFPNIVVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAI 196 (377)
T ss_dssp BCTTTSSBCGGGCCCCCHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHH
T ss_pred cCccccccccccCCcccHHHHHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCccccccch
Confidence 000 0 000123567777777777765 3456887 999999999999999999999999999998643210
Q ss_pred -hh-----cCCCCCcchh------------------------------hhhccCCCCCc--------------------C
Q 004149 656 -MV-----GTTDIPDWCY------------------------------VESYGSKGKDS--------------------F 679 (771)
Q Consensus 656 -~~-----~~~~~~~~~~------------------------------~~~~~~~~~~~--------------------~ 679 (771)
+. .....+.|.. ...+....... +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (377)
T 2b61_A 197 GFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKF 276 (377)
T ss_dssp HHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhhhhhh
Confidence 00 0000000000 00000000000 0
Q ss_pred CCCCChhhH----HHHhhcC-------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC-CCCc
Q 004149 680 TESPSVEDL----TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDVH 747 (771)
Q Consensus 680 ~~~~~~~~~----~~~~~~s-------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~-~~~H 747 (771)
......... ..+...+ ....+.++++|+|+++|++|.++|+++..+..+.+.+....+++++++ ++||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~gH 356 (377)
T 2b61_A 277 LERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGH 356 (377)
T ss_dssp HTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGG
T ss_pred ccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcccCCccchHHHHHHHHhcCCCceEEEeCCCCCc
Confidence 000000000 0011111 134567899999999999999999966666666666665678999999 9999
Q ss_pred cCCCCCChHHHHHHHHHHHHH
Q 004149 748 GIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~wl~~ 768 (771)
..... ...++.+.|.+||++
T Consensus 357 ~~~~e-~p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 357 DAFLV-DYDQFEKRIRDGLAG 376 (377)
T ss_dssp GHHHH-CHHHHHHHHHHHHHT
T ss_pred hhhhc-CHHHHHHHHHHHHhc
Confidence 87643 345788899999875
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=160.90 Aligned_cols=194 Identities=12% Similarity=0.018 Sum_probs=129.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-----CcchHHHHHHHHCC----cEEEEECCCCCCCCChhhh
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-----SSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEAL 585 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-----~~~~~~~~~la~~G----~~V~~~d~rG~~~~g~~~~ 585 (771)
+.++ .+.+++|.|+++.+.+++|+||++||++..... ..+...+..|+++| |+|++||++|..+.+..
T Consensus 48 s~~~-~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~~~~~~~~-- 124 (297)
T 1gkl_A 48 GING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQN-- 124 (297)
T ss_dssp ETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCSTTCCTTT--
T ss_pred cCCC-EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcCCccchHH--
Confidence 3344 899999999987667789999999997754321 12335567777764 99999999874322111
Q ss_pred hcCCCCccccchhhHHHHHHHHHHcCC------------CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch
Q 004149 586 QSLPGKVGSQDVNDVLTAIDHVIDMGL------------ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 586 ~~~~~~~~~~~~~D~~~~i~~l~~~~~------------~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~ 653 (771)
+.....+++. .++.+... .++++++|+|+||||++++.++.++|++|+++++.+|...+
T Consensus 125 ------~~~~~~~~l~---~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v~~sg~~~~ 195 (297)
T 1gkl_A 125 ------FYQEFRQNVI---PFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWY 195 (297)
T ss_dssp ------HHHHHHHTHH---HHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCB
T ss_pred ------HHHHHHHHHH---HHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheeeEecccccc
Confidence 1111133444 44444322 25678999999999999999999999999999999997532
Q ss_pred hhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
... +. ........+... ..+.....++++.+|+.|..+ .+++++.++|++.
T Consensus 196 ~~~---------------~~---------~~~~~~~~~~~~---~~~~~~~~~l~~~~G~~D~~~--~~~~~l~~~L~~~ 246 (297)
T 1gkl_A 196 GNS---------------PQ---------DKANSIAEAINR---SGLSKREYFVFAATGSEDIAY--ANMNPQIEAMKAL 246 (297)
T ss_dssp SSS---------------HH---------HHHHHHHHHHHH---HTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHHTS
T ss_pred CCc---------------cc---------hhhhHHHHHHhh---ccCCcCcEEEEEEeCCCcccc--hhHHHHHHHHHHc
Confidence 100 00 000011111111 112223456777899999875 6788999999998
Q ss_pred C----------CCEEEEEeCCCCccC
Q 004149 734 G----------VETKVIVFPNDVHGI 749 (771)
Q Consensus 734 g----------~~~~~~~~~~~~H~~ 749 (771)
| +++++.++++++|.+
T Consensus 247 g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 247 PHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp TTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred CCccccccccCCceEEEECCCCCcCH
Confidence 8 589999999999964
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=164.94 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=137.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~-~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+|.++++... + ..|.||++||.+ .......|...+..|++. |.|+++|+||. |.+. .. ....
T Consensus 24 ~g~~l~y~~~------g--~g~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G~---G~S~-~~----~~~~ 86 (296)
T 1j1i_A 24 GGVETRYLEA------G--KGQPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLGF---GKTA-KP----DIEY 86 (296)
T ss_dssp TTEEEEEEEE------C--CSSEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTTS---TTSC-CC----SSCC
T ss_pred CCEEEEEEec------C--CCCeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCCC---CCCC-CC----CCCC
Confidence 5666664432 1 136799999964 222233466667777655 99999999994 4442 11 1122
Q ss_pred chhhHHHHHHHHHHcCCCCC-CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-CCC----CCcchhhh
Q 004149 596 DVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTD----IPDWCYVE 669 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-~~~----~~~~~~~~ 669 (771)
..++..+.+..+++.. +. +++.|+||||||.+++.++.++|++++++|+.+|......... ... .+......
T Consensus 87 ~~~~~~~dl~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (296)
T 1j1i_A 87 TQDRRIRHLHDFIKAM--NFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMV 164 (296)
T ss_dssp CHHHHHHHHHHHHHHS--CCSSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHHH
T ss_pred CHHHHHHHHHHHHHhc--CCCCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHHH
Confidence 3455555554444442 33 6899999999999999999999999999999988642110000 000 00000000
Q ss_pred hccCCCCCcCCCCCChh----------------hHHHHh--------hcCccccccCCCCcEEEEeeCCCCccCcHHHHH
Q 004149 670 SYGSKGKDSFTESPSVE----------------DLTRFH--------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~----------------~~~~~~--------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 725 (771)
.+....... ......+ ....+. .......+.++++|+|+++|++|..+|++.+..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~~~~~~~~ 243 (296)
T 1j1i_A 165 HLVKALTND-GFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYK 243 (296)
T ss_dssp HHHHHHSCT-TCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHhccC-cccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCcccCHHHHHH
Confidence 000000000 0000000 000000 001223467889999999999999999998888
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 726 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+.+.+. +.++++++++||.... +...++.+.+.+||.+.+
T Consensus 244 ~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~~ 283 (296)
T 1j1i_A 244 FLDLID----DSWGYIIPHCGHWAMI-EHPEDFANATLSFLSLRV 283 (296)
T ss_dssp HHHHCT----TEEEEEESSCCSCHHH-HSHHHHHHHHHHHHHHC-
T ss_pred HHHHCC----CCEEEEECCCCCCchh-cCHHHHHHHHHHHHhccC
Confidence 877664 3789999999998653 345678889999998753
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=151.22 Aligned_cols=180 Identities=15% Similarity=0.124 Sum_probs=121.3
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|+||++||.+.... ..|...+. .|+++||.|+++|+|.+.. + ..+++.+.+..+.+. . .
T Consensus 4 ~p~vv~~HG~~~~~~-~~~~~~~~~~l~~~g~~v~~~d~~~~~~---------~------~~~~~~~~~~~~~~~--~-~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASST-NHWFPWLKKRLLADGVQADILNMPNPLQ---------P------RLEDWLDTLSLYQHT--L-H 64 (192)
T ss_dssp CCEEEEECCTTCCTT-STTHHHHHHHHHHTTCEEEEECCSCTTS---------C------CHHHHHHHHHTTGGG--C-C
T ss_pred CCEEEEEcCCCCCcc-hhHHHHHHHHHHhCCcEEEEecCCCCCC---------C------CHHHHHHHHHHHHHh--c-c
Confidence 478999999776532 15666664 6889999999999993210 1 345555555444443 2 5
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhh
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 693 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (771)
++++|+|||+||.+++.++.++|+ +++++|+.+|...... .+..... +...+.
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~--------~~~~~~~--------~~~~~~--------- 119 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLP--------TLQMLDE--------FTQGSF--------- 119 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCT--------TCGGGGG--------GTCSCC---------
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccc--------cchhhhh--------hhhcCC---------
Confidence 789999999999999999999999 9999999998754211 0000000 000000
Q ss_pred cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC--ChHHHHHHHHHHHH
Q 004149 694 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ--SDFESFLNIGLWFK 767 (771)
Q Consensus 694 ~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~wl~ 767 (771)
....+.++++|+|+++|++|..+|++.++.+.+.+ . .+++++++++|.+.... ...+....+.+|++
T Consensus 120 --~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~l~ 188 (192)
T 1uxo_A 120 --DHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQI-D----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFS 188 (192)
T ss_dssp --CHHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHT-T----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHH
T ss_pred --CHHHHHhhcCCEEEEecCCCCcCCHHHHHHHHHhc-C----ceEEEeCCCcCcccccccccHHHHHHHHHHHHH
Confidence 01234456689999999999999999998888877 3 68999999999876332 22233444444443
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=161.32 Aligned_cols=218 Identities=16% Similarity=0.112 Sum_probs=129.0
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.+.+ ...|...+..|+++||.|+++|+||. |.+.... .....++++.+.+..+++.-. .
T Consensus 8 ~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~---G~S~~~~----~~~~~~~~~a~dl~~~l~~l~-~ 77 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSAA---GINPRRL----DEIHTFRDYSEPLMEVMASIP-P 77 (264)
T ss_dssp -CCCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTS---TTCSCCG----GGCCSHHHHHHHHHHHHHHSC-T
T ss_pred CCCCeEEEECCCccc--cchHHHHHHHHHhCCCEEEEeecCCC---CCCCCCc----ccccCHHHHHHHHHHHHHHhC-C
Confidence 456889999997754 34688889999889999999999994 4432110 011234555544444444321 1
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh---------hhhcCCCCCcch--hhhhccC----------
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC--YVESYGS---------- 673 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~--~~~~~~~---------- 673 (771)
.+++.|+||||||.+++.++.++|++++++|+.++..... .+........|. ....+..
T Consensus 78 ~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (264)
T 2wfl_A 78 DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMIL 157 (264)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEESCTTSCEEEEEC
T ss_pred CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhccCCCCCcchhhh
Confidence 3689999999999999999999999999999988642100 000000000000 0000000
Q ss_pred --CCC-CcCCCCCChhhHHH---HhhcCcc--------ccc---cCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004149 674 --KGK-DSFTESPSVEDLTR---FHSKSPI--------SHI---SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 674 --~~~-~~~~~~~~~~~~~~---~~~~sp~--------~~~---~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
... ..+......+.... +....+. ..+ ...++|+|+++|++|..+|++.++.+.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p~---- 233 (264)
T 2wfl_A 158 GPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGA---- 233 (264)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHHCC----
T ss_pred hHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCCHHHHHHHHHhCCC----
Confidence 000 00000000011000 0000000 001 11358999999999999999988888877753
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.++++++++||.... +...++.+.+.+|++
T Consensus 234 ~~~~~i~~~gH~~~~-e~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 234 DKVKEIKEADHMGML-SQPREVCKCLLDISD 263 (264)
T ss_dssp SEEEEETTCCSCHHH-HSHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCCchhh-cCHHHHHHHHHHHhh
Confidence 689999999998663 344577788888864
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=169.67 Aligned_cols=226 Identities=12% Similarity=0.166 Sum_probs=139.6
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
-+|..+++..+.++ ..|+||++||++.. ...|...+..|+ +||.|+++|+||.+ .+... ....
T Consensus 17 ~~g~~l~~~~~g~~------~~~~vl~lHG~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G---~s~~~-----~~~~ 79 (299)
T 3g9x_A 17 VLGERMHYVDVGPR------DGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIGMG---KSDKP-----DLDY 79 (299)
T ss_dssp ETTEEEEEEEESCS------SSCCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTTST---TSCCC-----CCCC
T ss_pred eCCeEEEEEecCCC------CCCEEEEECCCCcc--HHHHHHHHHHHc-cCCEEEeeCCCCCC---CCCCC-----CCcc
Confidence 35777776655332 34789999997765 346666777774 69999999999944 43211 1133
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCC----------CCc-
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----------IPD- 664 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~----------~~~- 664 (771)
..+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++............ .+.
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (299)
T 3g9x_A 80 FFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADV 157 (299)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGGGHHHHHHHTSSSH
T ss_pred cHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchHHHHHHHHHcCCCc
Confidence 466666666666665 3456899999999999999999999999999999885432210000000 000
Q ss_pred --------chhhhhccCCCCCcCCCCCChhhHHHH-----------------hhc--------------CccccccCCCC
Q 004149 665 --------WCYVESYGSKGKDSFTESPSVEDLTRF-----------------HSK--------------SPISHISKVKT 705 (771)
Q Consensus 665 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------sp~~~~~~i~~ 705 (771)
..+...+.. ..............+ ... +....+.++++
T Consensus 158 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 234 (299)
T 3g9x_A 158 GRELIIDQNAFIEGALP---KCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPV 234 (299)
T ss_dssp HHHHHTTSCHHHHTHHH---HTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCS
T ss_pred chhhhccchhhHHHhhh---hhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhhhhhhcccCCC
Confidence 000000000 000000001111100 000 11122567899
Q ss_pred cEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 706 PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 706 P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
|+|+++|++|..+|++.++.+.+.+.+ +++++++++||.+.. +...++.+.|.+++.+
T Consensus 235 P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~~-e~p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 235 PKLLFWGTPGVLIPPAEAARLAESLPN----CKTVDIGPGLHYLQE-DNPDLIGSEIARWLPA 292 (299)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCHHH-HCHHHHHHHHHHHSGG
T ss_pred CeEEEecCCCCCCCHHHHHHHHhhCCC----CeEEEeCCCCCcchh-cCHHHHHHHHHHHHhh
Confidence 999999999999999988888777643 789999999998653 3344666666666543
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=167.04 Aligned_cols=226 Identities=15% Similarity=0.202 Sum_probs=139.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++...-+ ++.|.||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+.. +. ....
T Consensus 15 ~g~~l~y~~~G~------g~~~pvvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~---~~--~~~~ 77 (316)
T 3afi_E 15 LGSSMAYRETGA------QDAPVVLFLHGNPTS--SHIWRNILPLVSP-VAHCIAPDLIG---FGQSGK---PD--IAYR 77 (316)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTCC--GGGGTTTHHHHTT-TSEEEEECCTT---STTSCC---CS--SCCC
T ss_pred CCEEEEEEEeCC------CCCCeEEEECCCCCc--hHHHHHHHHHHhh-CCEEEEECCCC---CCCCCC---CC--CCCC
Confidence 466666554321 223589999998765 4467778888865 49999999999 555421 11 1234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc---hhhhh----------------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN---LALMV---------------- 657 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~---~~~~~---------------- 657 (771)
++++.+.+..+++.- +.+++.|+||||||.+++.+|.++|++++++|+.++... +....
T Consensus 78 ~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (316)
T 3afi_E 78 FFDHVRYLDAFIEQR--GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARA 155 (316)
T ss_dssp HHHHHHHHHHHHHHT--TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccchhhccccccchhHHH
Confidence 566666665555552 347899999999999999999999999999998876321 10000
Q ss_pred --cCCCCCc---c------hhhhhccCCCCCcCCCCCChhhHHHH-----------------hhcC--------------
Q 004149 658 --GTTDIPD---W------CYVESYGSKGKDSFTESPSVEDLTRF-----------------HSKS-------------- 695 (771)
Q Consensus 658 --~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~s-------------- 695 (771)
.....+. . .+...+... ........+....+ ....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (316)
T 3afi_E 156 VFRKFRTPGEGEAMILEANAFVERVLPG---GIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEALQS 232 (316)
T ss_dssp HHHHHTSTTHHHHHHTTSCHHHHTTTGG---GCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTTBSHHHHHHHHH
T ss_pred HHHHhcCCchhhHHHhccchHHHHhccc---ccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccccchhhhhHHHH
Confidence 0000000 0 000000000 00000000000000 0000
Q ss_pred ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 696 p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
....+.++++|+|+++|++|..+|++.++.+.+.+. ..++++++++||.... +...++.+.|.+||++.
T Consensus 233 ~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~GH~~~~-e~p~~~~~~i~~fl~~~ 301 (316)
T 3afi_E 233 AHAALAASSYPKLLFTGEPGALVSPEFAERFAASLT----RCALIRLGAGLHYLQE-DHADAIGRSVAGWIAGI 301 (316)
T ss_dssp HHHHHHHCCSCEEEEEEEECSSSCHHHHHHHHHHSS----SEEEEEEEEECSCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCeEEEecCCCCccCHHHHHHHHHhCC----CCeEEEcCCCCCCchh-hCHHHHHHHHHHHHhhc
Confidence 011234689999999999999999888887777664 3789999999998653 34567888999999764
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-17 Score=169.58 Aligned_cols=223 Identities=16% Similarity=0.166 Sum_probs=135.3
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
..+.+..+.+ ..|+||++||.+.. ...|...+..| ||.|+++|+||. |.+... .......+
T Consensus 70 ~~~~~~~~g~-------~~~~vv~~hG~~~~--~~~~~~~~~~l---g~~Vi~~D~~G~---G~S~~~----~~~~~~~~ 130 (330)
T 3p2m_A 70 GAISALRWGG-------SAPRVIFLHGGGQN--AHTWDTVIVGL---GEPALAVDLPGH---GHSAWR----EDGNYSPQ 130 (330)
T ss_dssp TTEEEEEESS-------SCCSEEEECCTTCC--GGGGHHHHHHS---CCCEEEECCTTS---TTSCCC----SSCBCCHH
T ss_pred ceEEEEEeCC-------CCCeEEEECCCCCc--cchHHHHHHHc---CCeEEEEcCCCC---CCCCCC----CCCCCCHH
Confidence 3466555533 24779999997765 33565555554 999999999994 443211 11223455
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc--CCC----------CCcch
Q 004149 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG--TTD----------IPDWC 666 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~--~~~----------~~~~~ 666 (771)
++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|......... ... ...+.
T Consensus 131 ~~a~dl~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (330)
T 3p2m_A 131 LNSETLAPVLRE--LAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFP 208 (330)
T ss_dssp HHHHHHHHHHHH--SSTTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBS
T ss_pred HHHHHHHHHHHH--hCCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCcccc
Confidence 655555555554 3457899999999999999999999999999999998654211100 000 00000
Q ss_pred hhhhccCCCCCcCCCCCChhhHHHHhhc------------------------CccccccCCCCcEEEEeeCCCCccCcHH
Q 004149 667 YVESYGSKGKDSFTESPSVEDLTRFHSK------------------------SPISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------sp~~~~~~i~~P~Lii~G~~D~~vp~~~ 722 (771)
........... ................ .....+.++++|+|+++|++|..+|++.
T Consensus 209 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~ 287 (330)
T 3p2m_A 209 SFQAMLDLTIA-AAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQD 287 (330)
T ss_dssp CHHHHHHHHHH-HCTTSCHHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCCSSCHHH
T ss_pred CHHHHHHHHHh-cCCCCCHHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCCCCCHHH
Confidence 00000000000 0000000000000000 0012456789999999999999999998
Q ss_pred HHHHHHHHHhCCCCEE-EEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 723 GLQYARALREKGVETK-VIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~-~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++.+.+.+.. .+ +++++++||.+.. +...++.+.|.+||++
T Consensus 288 ~~~l~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 288 TAELHRRATH----FRGVHIVEKSGHSVQS-DQPRALIEIVRGVLDT 329 (330)
T ss_dssp HHHHHHHCSS----EEEEEEETTCCSCHHH-HCHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCC----CeeEEEeCCCCCCcch-hCHHHHHHHHHHHHhc
Confidence 8888776643 67 9999999998753 3455777888888764
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=178.00 Aligned_cols=232 Identities=15% Similarity=0.173 Sum_probs=143.8
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.++++.... +.|+||++||++.. ...|...+..|+++||.|+++|+||.+ .+.. +......
T Consensus 245 ~dg~~l~~~~~g--------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~D~~G~G---~S~~---~~~~~~~ 308 (555)
T 3i28_A 245 KPRVRLHFVELG--------SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKGYG---ESSA---PPEIEEY 308 (555)
T ss_dssp ETTEEEEEEEEC--------SSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTST---TSCC---CSCGGGG
T ss_pred CCCcEEEEEEcC--------CCCEEEEEeCCCCc--hhHHHHHHHHHHhCCCEEEEecCCCCC---CCCC---CCCcccc
Confidence 367777654432 35899999998765 456778889999999999999999944 3321 1111222
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-------------------
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM------------------- 656 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~------------------- 656 (771)
..+++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+.+|.......
T Consensus 309 ~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (555)
T 3i28_A 309 CMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLY 386 (555)
T ss_dssp SHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCTTSCHHHHHHTCGGGHHHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCCCCCCcccchHHHHhcCCccchhHH
Confidence 344444444444433 24568999999999999999999999999999988875321000
Q ss_pred hcCCCCCc--------chhhhhccCC---------------------CCCcCCCCCChhhHHHHh---------------
Q 004149 657 VGTTDIPD--------WCYVESYGSK---------------------GKDSFTESPSVEDLTRFH--------------- 692 (771)
Q Consensus 657 ~~~~~~~~--------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--------------- 692 (771)
........ ..+...+... ...........+....+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (555)
T 3i28_A 387 FQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 466 (555)
T ss_dssp HHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHHTTTTTHHHHHTT
T ss_pred hhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccccCHHHHHHHHHHHhcccchhHHHHH
Confidence 00000000 0000000000 000000000111111110
Q ss_pred -------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHH
Q 004149 693 -------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765 (771)
Q Consensus 693 -------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~w 765 (771)
..+....+.++++|+|+++|++|.++|++.++.+++.+. ++++++++++||.... +...++.+.+.+|
T Consensus 467 ~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~f 541 (555)
T 3i28_A 467 RNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWTQM-DKPTEVNQILIKW 541 (555)
T ss_dssp SCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCHHH-HSHHHHHHHHHHH
T ss_pred HhccccchhhccccccccccCEEEEEeCCCCCcCHHHHHHHHhhCC----CceEEEeCCCCCCcch-hCHHHHHHHHHHH
Confidence 012223456889999999999999999998888776664 3789999999997653 4456888999999
Q ss_pred HHHHh
Q 004149 766 FKKYC 770 (771)
Q Consensus 766 l~~~l 770 (771)
|++..
T Consensus 542 l~~~~ 546 (555)
T 3i28_A 542 LDSDA 546 (555)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 98764
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=161.72 Aligned_cols=224 Identities=14% Similarity=0.078 Sum_probs=137.0
Q ss_pred cEEEEEcCCCCCCCCCcchHH---HHHHHHCCcEEEEECCCCCCCCChhhhhcCC--CCccccchhhH--HHHHHHHHHc
Q 004149 538 PLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDV--LTAIDHVIDM 610 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~---~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~--~~~~~~~~~D~--~~~i~~l~~~ 610 (771)
|+||++||++.......|... .+.+++.||.|+++|.++...+... ..... +........+. .+.+.++.++
T Consensus 30 ~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~ 108 (280)
T 1dqz_A 30 HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDW-YQPSQSNGQNYTYKWETFLTREMPAWLQAN 108 (280)
T ss_dssp SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTSBC-SSSCTTTTCCSCCBHHHHHHTHHHHHHHHH
T ss_pred CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCccccCC-CCCCccccccccccHHHHHHHHHHHHHHHH
Confidence 589999997531123344432 3567788999999998864333211 00000 00011223332 2334444443
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHH
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 690 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (771)
..+++++++|+|+||||++|+.++.++|++|+++++.+|..+.........+.. ..............+.+. ...
T Consensus 109 ~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~---~~~ 183 (280)
T 1dqz_A 109 KGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGL--AMNDSGGYNANSMWGPSS---DPA 183 (280)
T ss_dssp HCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHHHHHH--HHHHTTSCCHHHHHCSTT---SHH
T ss_pred cCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcchhhhHHH--HhhhccCcCHHHhcCCCC---chh
Confidence 346777999999999999999999999999999999999876432100000000 000000000000000011 124
Q ss_pred HhhcCccccccCC---CCcEEEEeeCCCC--------------ccCcHHHHHHHHHHHhCC-CCEEEEEeCCCCccCCCC
Q 004149 691 FHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQYARALREKG-VETKVIVFPNDVHGIERP 752 (771)
Q Consensus 691 ~~~~sp~~~~~~i---~~P~Lii~G~~D~--------------~vp~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~~~~~ 752 (771)
+...+|...+.++ .+|+++.+|+.|. .++..++++++++|+++| +++++.++++++|.+.
T Consensus 184 ~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~-- 261 (280)
T 1dqz_A 184 WKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP-- 261 (280)
T ss_dssp HHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH--
T ss_pred hhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHHHHHHHHHHhCCCCceEEEecCCCccChH--
Confidence 5556776555444 5899999999997 577899999999999999 9999999988899752
Q ss_pred CChHHHHHHHHHHHHHHh
Q 004149 753 QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~~l 770 (771)
.....+...+.||.+.|
T Consensus 262 -~w~~~l~~~l~~l~~~l 278 (280)
T 1dqz_A 262 -YWNEQLVAMKADIQHVL 278 (280)
T ss_dssp -HHHHHHHHTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHh
Confidence 22345567777877665
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=160.71 Aligned_cols=212 Identities=16% Similarity=0.200 Sum_probs=130.9
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|++. |.|+++|+|| +|.+.... . . ...++++.+.+..+++. .+.++
T Consensus 17 ~~vvllHG~~~~--~~~~~~~~~~L~~~-~~vi~~Dl~G---~G~S~~~~--~-~-~~~~~~~~~dl~~~l~~--l~~~~ 84 (269)
T 2xmz_A 17 QVLVFLHGFLSD--SRTYHNHIEKFTDN-YHVITIDLPG---HGEDQSSM--D-E-TWNFDYITTLLDRILDK--YKDKS 84 (269)
T ss_dssp EEEEEECCTTCC--GGGGTTTHHHHHTT-SEEEEECCTT---STTCCCCT--T-S-CCCHHHHHHHHHHHHGG--GTTSE
T ss_pred CeEEEEcCCCCc--HHHHHHHHHHHhhc-CeEEEecCCC---CCCCCCCC--C-C-ccCHHHHHHHHHHHHHH--cCCCc
Confidence 469999997765 44677778888764 9999999999 44442211 1 0 23455655555555554 24578
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh----cC---CCC------Ccch-hhhhccCCCCCcCCC--
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----GT---TDI------PDWC-YVESYGSKGKDSFTE-- 681 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~----~~---~~~------~~~~-~~~~~~~~~~~~~~~-- 681 (771)
+.|+||||||.+++.+|.++|++++++|+.++........ .. ... .... +...+... ..+..
T Consensus 85 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 162 (269)
T 2xmz_A 85 ITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKL--PLFQSQL 162 (269)
T ss_dssp EEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTS--GGGGGGG
T ss_pred EEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhC--ccccccc
Confidence 9999999999999999999999999999998754321000 00 000 0000 00000000 00000
Q ss_pred -CC--------------ChhhHH-HHh------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004149 682 -SP--------------SVEDLT-RFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 682 -~~--------------~~~~~~-~~~------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
.. ...... .+. ..+....+.++++|+|+++|++|..+|+.... +.+.+ .++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~-~~~~~----~~~~~ 237 (269)
T 2xmz_A 163 ELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKK-MANLI----PNSKC 237 (269)
T ss_dssp GSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHHHHHHH-HHHHS----TTEEE
T ss_pred cCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccCHHHHH-HHhhC----CCcEE
Confidence 00 000000 000 01112356788999999999999999876543 54443 34899
Q ss_pred EEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 740 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++++++||.+.. +...++.+.+.+||++.
T Consensus 238 ~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 238 KLISATGHTIHV-EDSDEFDTMILGFLKEE 266 (269)
T ss_dssp EEETTCCSCHHH-HSHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCChhh-cCHHHHHHHHHHHHHHh
Confidence 999999998764 34567888999999864
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=160.68 Aligned_cols=231 Identities=15% Similarity=0.233 Sum_probs=131.4
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|..+++..+.+.+ +.|+||++||.+.+ ...|...+..|++ ||.|+++|+|| +|.+... ....
T Consensus 11 ~~~~g~~l~~~~~g~~~-----~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~---~~~~ 76 (285)
T 3bwx_A 11 TSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRN--ARDFEDLATRLAG-DWRVLCPEMRG---RGDSDYA---KDPM 76 (285)
T ss_dssp ECTTSCEEEEEEECBCT-----TSCCEEEECCTTCC--GGGGHHHHHHHBB-TBCEEEECCTT---BTTSCCC---SSGG
T ss_pred ecCCCceEEEEEcCCCC-----CCCcEEEECCCCcc--hhhHHHHHHHhhc-CCEEEeecCCC---CCCCCCC---CCcc
Confidence 34567888877765431 24679999997655 4578888888866 99999999999 4444211 0011
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCC--ccchhh------hhcCC-CCCc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP--LCNLAL------MVGTT-DIPD 664 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p--~~~~~~------~~~~~-~~~~ 664 (771)
...++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++ ...... +.... ....
T Consensus 77 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 3bwx_A 77 TYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGLERIRGYVGQGRNFET 154 (285)
T ss_dssp GCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHTTCCCEESS
T ss_pred ccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcccCcchhHHHHHHhcCCccccc
Confidence 12233333333333332 1246899999999999999999999999999998643 221100 00000 0000
Q ss_pred chhh-hhccCCCCCcCCCCCChhhHH-------------------------HHhhc-------CccccccCC-CCcEEEE
Q 004149 665 WCYV-ESYGSKGKDSFTESPSVEDLT-------------------------RFHSK-------SPISHISKV-KTPTIFL 710 (771)
Q Consensus 665 ~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~-------sp~~~~~~i-~~P~Lii 710 (771)
|... ..+.......+.... ..... .+... .....+.++ ++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii 233 (285)
T 3bwx_A 155 WMHAARALQESSGDVYPDWD-ITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMWPLFDALATRPLLVL 233 (285)
T ss_dssp HHHHHHHHHHHHTTTSTTCC-HHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCCCSSCCHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHhhhhcccccC-hHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhccccchhhHHHHHccCCCeEEE
Confidence 1000 000000000000000 00000 00000 000012234 7999999
Q ss_pred eeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 711 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 711 ~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+|++|..++++.++.+.+. .++++++++++||.....+ . +.+..|.+||++
T Consensus 234 ~G~~D~~~~~~~~~~~~~~-----~~~~~~~i~~~gH~~~~e~-p-~~~~~i~~fl~~ 284 (285)
T 3bwx_A 234 RGETSDILSAQTAAKMASR-----PGVELVTLPRIGHAPTLDE-P-ESIAAIGRLLER 284 (285)
T ss_dssp EETTCSSSCHHHHHHHHTS-----TTEEEEEETTCCSCCCSCS-H-HHHHHHHHHHTT
T ss_pred EeCCCCccCHHHHHHHHhC-----CCcEEEEeCCCCccchhhC-c-hHHHHHHHHHHh
Confidence 9999999998776665443 4589999999999876443 3 334678888853
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=168.89 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=88.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.++++....|+ ....|+||++||.+.. ...|...+..|+++||.|+++|+||.+ .+.. +......
T Consensus 10 ~~g~~l~y~~~G~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~vi~~d~~g~g---~s~~---~~~~~~~ 77 (356)
T 2e3j_A 10 CRGTRIHAVADSPP----DQQGPLVVLLHGFPES--WYSWRHQIPALAGAGYRVVAIDQRGYG---RSSK---YRVQKAY 77 (356)
T ss_dssp ETTEEEEEEEECCT----TCCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTTST---TSCC---CCSGGGG
T ss_pred cCCeEEEEEEecCC----CCCCCEEEEECCCCCc--HHHHHHHHHHHHHcCCEEEEEcCCCCC---CCCC---CCccccc
Confidence 35778887776654 1245889999997765 346777888899999999999999944 3321 1111122
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
..+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++..
T Consensus 78 ~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 78 RIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp SHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 344555544444444 345789999999999999999999999999999988654
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=159.64 Aligned_cols=218 Identities=18% Similarity=0.143 Sum_probs=132.1
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.||.|+++|+||. |.+... ......++++.+.+..+++.-. ..+
T Consensus 4 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~rVia~Dl~G~---G~S~~~----~~~~~~~~~~a~dl~~~l~~l~-~~~ 73 (273)
T 1xkl_A 4 GKHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAAS---GTDLRK----IEELRTLYDYTLPLMELMESLS-ADE 73 (273)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTS---TTCCCC----GGGCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHHhCCCEEEEecCCCC---CCCccC----cccccCHHHHHHHHHHHHHHhc-cCC
Confidence 4789999997754 34678888999999999999999994 443210 0111245555555555555421 136
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh---------hhhcCCCCCcchh--hhhccCC-----------
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWCY--VESYGSK----------- 674 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~~--~~~~~~~----------- 674 (771)
++.|+||||||.+++.++.++|++++++|+.++..... .+........|.. ...+...
T Consensus 74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (273)
T 1xkl_A 74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 153 (273)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred CEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccCH
Confidence 89999999999999999999999999999888642100 0000000000000 0000000
Q ss_pred -CC-CcCCCCCChhhHHH---HhhcC-----------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 675 -GK-DSFTESPSVEDLTR---FHSKS-----------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 675 -~~-~~~~~~~~~~~~~~---~~~~s-----------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.. ..+......+.... +.... ........++|+|+++|++|..+|++.++.+.+.+.. .+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~p~----~~ 229 (273)
T 1xkl_A 154 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGV----TE 229 (273)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCC----SE
T ss_pred HHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCCHHHHHHHHHhCCC----Ce
Confidence 00 00000000010000 00000 0000011368999999999999999988888877743 68
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 739 VIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+++++++||.... +...++.+.+.+|+++.
T Consensus 230 ~~~i~~aGH~~~~-e~P~~~~~~i~~fl~~~ 259 (273)
T 1xkl_A 230 AIEIKGADHMAML-CEPQKLCASLLEIAHKY 259 (273)
T ss_dssp EEEETTCCSCHHH-HSHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCchh-cCHHHHHHHHHHHHHHh
Confidence 8999999998763 34457888999999764
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-16 Score=161.19 Aligned_cols=237 Identities=19% Similarity=0.248 Sum_probs=135.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++...- ..|+||++||.+.. ...|...+..|++.||.|+++|+|| +|.+..... .......
T Consensus 19 ~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~~-~~~~~~~ 84 (328)
T 2cjp_A 19 NGLNMHLAELG--------EGPTILFIHGFPEL--WYSWRHQMVYLAERGYRAVAPDLRG---YGDTTGAPL-NDPSKFS 84 (328)
T ss_dssp TTEEEEEEEEC--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTCBCCCT-TCGGGGS
T ss_pred CCcEEEEEEcC--------CCCEEEEECCCCCc--hHHHHHHHHHHHHCCcEEEEECCCC---CCCCCCcCc-CCccccc
Confidence 56667655431 23789999997765 4578888899988999999999999 444421100 1111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc-------hhh-h---hcC------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-------LAL-M---VGT------ 659 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~-------~~~-~---~~~------ 659 (771)
++++.+.+..+++.-..+.+++.|+||||||.+++.+|.++|++++++|+.++... ... + ...
T Consensus 85 ~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (328)
T 2cjp_A 85 ILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISR 164 (328)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCSSCCHHHHHHHHHCTTBHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccCCCcccccCChHHHHHhhcccchHHHh
Confidence 33333333333332111157899999999999999999999999999999875421 000 0 000
Q ss_pred CCCCcc---h--------hh-hhcc---C------C---CCCcCC------CCCChhhHHHHh----------------h
Q 004149 660 TDIPDW---C--------YV-ESYG---S------K---GKDSFT------ESPSVEDLTRFH----------------S 693 (771)
Q Consensus 660 ~~~~~~---~--------~~-~~~~---~------~---~~~~~~------~~~~~~~~~~~~----------------~ 693 (771)
...+.. . .. ..+. . . ....+. .....+....+. .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (328)
T 2cjp_A 165 FQVPGEIEAEFAPIGAKSVLKKILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRA 244 (328)
T ss_dssp TSSTTHHHHHHHHHCHHHHHHHHHTCCCSSCCBCCTTCTTTTSCCCCGGGGTTSCHHHHHHHHHHHHHHCSHHHHHHHHT
T ss_pred hhCCCcHHHHhhccCHHHHHHHHhcccCCCcccccccchhhhcccccccCcCCCCHHHHHHHHHHhcccCCcchHHHHHh
Confidence 000000 0 00 0000 0 0 000000 000011111000 0
Q ss_pred cC------ccccccCCCCcEEEEeeCCCCccCcHHHHHHH--HHHHhCCCCE-EEEEeCCCCccCCCCCChHHHHHHHHH
Q 004149 694 KS------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYA--RALREKGVET-KVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 694 ~s------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~--~~l~~~g~~~-~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
.. ....+.++++|+|+++|++|..+|+..+.++. +.+.+.-.+. ++++++++||..... ...++.+.|.+
T Consensus 245 ~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~ 323 (328)
T 2cjp_A 245 LPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQE-RPHEISKHIYD 323 (328)
T ss_dssp HHHHHHHTGGGTTCCCCSCEEEEEETTCGGGGSTTHHHHHHHSHHHHHSTTBCCCEEETTCCSCHHHH-SHHHHHHHHHH
T ss_pred cccchhhhhhccCCccCCCEEEEEeCCcccccCcchhhhhhhhhHHHHhcCCeeEEEcCCCCCCcchh-CHHHHHHHHHH
Confidence 00 00135678999999999999999876443333 3444333346 788999999986633 45678888999
Q ss_pred HHHH
Q 004149 765 WFKK 768 (771)
Q Consensus 765 wl~~ 768 (771)
||++
T Consensus 324 fl~~ 327 (328)
T 2cjp_A 324 FIQK 327 (328)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9864
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-17 Score=165.51 Aligned_cols=217 Identities=16% Similarity=0.147 Sum_probs=131.0
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
+.|+||++||.+.. ...|...+..|.++||.|+++|+||.+.+.... ........+++.+.+..+++. .+.
T Consensus 23 ~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~ 93 (279)
T 4g9e_A 23 EGAPLLMIHGNSSS--GAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAI-----DPDRSYSMEGYADAMTEVMQQ--LGI 93 (279)
T ss_dssp CEEEEEEECCTTCC--GGGGHHHHHSHHHHHEEEEEECCTTSTTSCCCS-----CHHHHSSHHHHHHHHHHHHHH--HTC
T ss_pred CCCeEEEECCCCCc--hhHHHHHHhHHHhcCCeEEeecCCCCCCCCCCC-----CcccCCCHHHHHHHHHHHHHH--hCC
Confidence 45889999997765 446777888877789999999999954432210 011122455555555555554 234
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc-cchhhhh-cCCCCCcchh----------hhhccCCCCCcCCCCC
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLALMV-GTTDIPDWCY----------VESYGSKGKDSFTESP 683 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~-~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 683 (771)
+++.|+|||+||.+++.++.++|+ +.++|+.++. ....... .......... ...+.. ..+....
T Consensus 94 ~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 169 (279)
T 4g9e_A 94 ADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEVGQGFKSGPDMALAGQEIFSERDVESYAR---STCGEPF 169 (279)
T ss_dssp CCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCCCCCGGGHHHHBCCSTTGGGGGCSCCCHHHHHHHHH---HHHCSSC
T ss_pred CceEEEEECchHHHHHHHHhhCCc-ceeEEEecCCCCCCCccchhhccchhhhhcCcccccHHHHHHHHH---hhccCcc
Confidence 689999999999999999999999 5555555443 3221110 0000000000 000000 0000000
Q ss_pred ChhhHHHHh------------------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHH-HHHHhCCCCEEEEEeCC
Q 004149 684 SVEDLTRFH------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA-RALREKGVETKVIVFPN 744 (771)
Q Consensus 684 ~~~~~~~~~------------------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~-~~l~~~g~~~~~~~~~~ 744 (771)
.......+. ..+....+.++++|+|+++|++|..+|++.+..+. +.+. +++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~ 245 (279)
T 4g9e_A 170 EASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLW----EGKTHVIDN 245 (279)
T ss_dssp CHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTCSSBCHHHHTTCCCSSBG----GGSCEEETT
T ss_pred cHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCCcccchHHHHHHhhccCC----CCeEEEECC
Confidence 000001110 11222335678999999999999999988777765 3332 367889999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 745 DVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+||.+. .+...++.+.+.+||++.-
T Consensus 246 ~gH~~~-~~~p~~~~~~i~~fl~~~~ 270 (279)
T 4g9e_A 246 AGHAPF-REAPAEFDAYLARFIRDCT 270 (279)
T ss_dssp CCSCHH-HHSHHHHHHHHHHHHHHHH
T ss_pred CCcchH-HhCHHHHHHHHHHHHHHhh
Confidence 999865 3455678899999998753
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=159.46 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=78.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++...-++ ..|.||++||++.......+ ...+...||.|+++|+|| +|.+... .......
T Consensus 23 ~g~~l~~~~~g~~------~g~~vvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~ 87 (317)
T 1wm1_A 23 DGHRIYWELSGNP------NGKPAVFIHGGPGGGISPHH---RQLFDPERYKVLLFDQRG---CGRSRPH---ASLDNNT 87 (317)
T ss_dssp SSCEEEEEEEECT------TSEEEEEECCTTTCCCCGGG---GGGSCTTTEEEEEECCTT---STTCBST---TCCTTCS
T ss_pred CCcEEEEEEcCCC------CCCcEEEECCCCCcccchhh---hhhccccCCeEEEECCCC---CCCCCCC---ccccccc
Confidence 5667765544321 23669999997654322112 223445799999999999 4444211 1111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
.+++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++..
T Consensus 88 ~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 140 (317)
T 1wm1_A 88 TWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 140 (317)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCC
Confidence 55565556666555 345689999999999999999999999999999987653
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-17 Score=177.26 Aligned_cols=242 Identities=17% Similarity=0.206 Sum_probs=142.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHH---HHHHCCcEEEEECCCCCCCCChhhhhcC-C--C
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSL-P--G 590 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~---~la~~G~~V~~~d~rG~~~~g~~~~~~~-~--~ 590 (771)
|.++++..+.+. ...+.|+||++||.+.+.... .|...+. .|+..||.|+++|+||. ++|.+..... + +
T Consensus 93 g~~l~y~~~G~~---~~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~-~~G~S~~~~~~~~~~ 168 (444)
T 2vat_A 93 DVPVAYKSWGRM---NVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS-PFGSAGPCSPDPDAE 168 (444)
T ss_dssp EEEEEEEEESCC---CTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC-SSSSSSTTSBCTTTC
T ss_pred ceeEEEEEecCC---CCCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCC-CCCCCCCCCCCcccc
Confidence 444554444332 223458999999977664321 1554443 46578999999999994 1233221000 0 0
Q ss_pred C---c----cccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh-----
Q 004149 591 K---V----GSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----- 657 (771)
Q Consensus 591 ~---~----~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~----- 657 (771)
. + ....++|+.+.+..+++. ++.++ +.|+||||||.+++.+|.++|++++++|+.++........
T Consensus 169 ~~~~~~~~f~~~t~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~~~~~~~~~~~ 246 (444)
T 2vat_A 169 GQRPYGAKFPRTTIRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWCAAWFE 246 (444)
T ss_dssp --CBCGGGCCCCCHHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEeccccCCccchhHHH
Confidence 0 1 123466666666665554 23467 9999999999999999999999999999998865421000
Q ss_pred --c--CCCCCcch------------------------------hhhhccCCCCC-c----------------------CC
Q 004149 658 --G--TTDIPDWC------------------------------YVESYGSKGKD-S----------------------FT 680 (771)
Q Consensus 658 --~--~~~~~~~~------------------------------~~~~~~~~~~~-~----------------------~~ 680 (771)
. ....+.|. +...+...... . +.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (444)
T 2vat_A 247 TQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGNSHRA 326 (444)
T ss_dssp HHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC-------------------------
T ss_pred HHHHHHhcCCccccccccccCCcccchhHHHhhhhccccChHHHHHHhccCccccccccccccccccccccccccccccc
Confidence 0 00000000 00011110000 0 00
Q ss_pred CCC--ChhhH---------------------HHHhhc--------CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004149 681 ESP--SVEDL---------------------TRFHSK--------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 681 ~~~--~~~~~---------------------~~~~~~--------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~ 729 (771)
... ..+.. ..+... +....+.++++|+|+++|++|.++|++.++++.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~i~~PvLvi~G~~D~~~p~~~~~~l~~~ 406 (444)
T 2vat_A 327 GQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVEMGRS 406 (444)
T ss_dssp --CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHhhccCccHHHHHHHHhhhhhccccccccHHHHhhcCCCCEEEEEeCCCCCCCHHHHHHHHHH
Confidence 000 00000 000000 13345678999999999999999999988888887
Q ss_pred HHhCCCCEEEEEeC-CCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 730 LREKGVETKVIVFP-NDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 730 l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+.+ +++++++ ++||..... ...++.+.|.+||++++
T Consensus 407 ~p~----~~~~~i~~~~GH~~~~e-~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 407 IPN----SRLCVVDTNEGHDFFVM-EADKVNDAVRGFLDQSL 443 (444)
T ss_dssp STT----EEEEECCCSCGGGHHHH-THHHHHHHHHHHHTC--
T ss_pred CCC----cEEEEeCCCCCcchHHh-CHHHHHHHHHHHHHHhc
Confidence 753 7999999 899986543 35678889999998765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-14 Score=151.03 Aligned_cols=282 Identities=6% Similarity=-0.022 Sum_probs=172.2
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
...++||+++++.... ... ......++.++.. .++..+....+ .....++|||||+++++..... ..+
T Consensus 46 ~~~s~dg~~l~~~~~~-~~~-~~~~~~v~~~d~~--~~~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~---~~v 113 (353)
T 3vgz_A 46 MAYSQQENALWLATSQ-SRK-LDKGGVVYRLDPV--TLEVTQAIHND-----LKPFGATINNTTQTLWFGNTVN---SAV 113 (353)
T ss_dssp EEEETTTTEEEEEECC-CTT-TEESEEEEEECTT--TCCEEEEEEES-----SCCCSEEEETTTTEEEEEETTT---TEE
T ss_pred eEECCCCCEEEEEcCC-CcC-CCCCccEEEEcCC--CCeEEEEEecC-----CCcceEEECCCCCEEEEEecCC---CEE
Confidence 3456799888655432 111 0124577876653 22332222221 2356789999999887665432 356
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
+.++ ..++....+.................++.|||||++|++....
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------------------------------- 161 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-------------------------------- 161 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES--------------------------------
T ss_pred EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC--------------------------------
Confidence 6666 4555555555422110000000012468999999987765321
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
....|+++|+.+++.... .+ ....+..++|+|||+. |++.. ....|++
T Consensus 162 ----------~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~s~dg~~----l~~~~---------------~~~~i~~ 210 (353)
T 3vgz_A 162 ----------KESVIWVVDGGNIKLKTA--IQNTGKMSTGLALDSEGKR----LYTTN---------------ADGELIT 210 (353)
T ss_dssp ----------SSCEEEEEETTTTEEEEE--ECCCCTTCCCCEEETTTTE----EEEEC---------------TTSEEEE
T ss_pred ----------CCceEEEEcCCCCceEEE--ecCCCCccceEEECCCCCE----EEEEc---------------CCCeEEE
Confidence 136799999999887665 33 3334678899999997 76654 2347889
Q ss_pred EecccccchhhhhhhhcCCCCCCcce-ecCC----CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 285 VRVSLYKSEASELELKESSSEDLPVV-NLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~----~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
+|+ .+++.. .+.. .........|||||++|+..... ...|+++|+.++
T Consensus 211 ~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~v~~~d~~~~ 263 (353)
T 3vgz_A 211 IDT-----------------ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK----------AAEVLVVDTRNG 263 (353)
T ss_dssp EET-----------------TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS----------SSEEEEEETTTC
T ss_pred EEC-----------------CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC----------CCEEEEEECCCC
Confidence 997 555443 2222 12235568999999988665533 256999998776
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeE
Q 004149 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSL 439 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~ 439 (771)
+.... +... ....++|+|||++|+++...+ ..|+.+|+.++++..............
T Consensus 264 ~~~~~----------~~~~-----------~~~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~ 320 (353)
T 3vgz_A 264 NILAK----------VAAP-----------ESLAVLFNPARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDTPTHPNSLA 320 (353)
T ss_dssp CEEEE----------EECS-----------SCCCEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred cEEEE----------EEcC-----------CCceEEECCCCCEEEEEECCC--CeEEEEECCCCeEEEEEecCCCCCeEE
Confidence 53211 1110 123578999999887765433 467788998888776554444445678
Q ss_pred EeecCCEEEEEEeC
Q 004149 440 LTLDGDNIIAVSSS 453 (771)
Q Consensus 440 ~s~d~~~l~~~~s~ 453 (771)
|++||+.|+++...
T Consensus 321 ~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 321 LSADGKTLYVSVKQ 334 (353)
T ss_dssp ECTTSCEEEEEEEC
T ss_pred EcCCCCEEEEEEcc
Confidence 99999988888766
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-16 Score=178.59 Aligned_cols=268 Identities=9% Similarity=0.103 Sum_probs=168.2
Q ss_pred EeCCCCCeEEEEecCCCC-CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004149 105 VPSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
..+|||++++|+++..+. ...+|.+. .++..+.+++...-..+. ...+.+++|||||++|||......
T Consensus 78 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDg~~la~~~~~~G------- 147 (710)
T 2xdw_A 78 CHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDG---TVALRGYAFSEDGEYFAYGLSASG------- 147 (710)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTS---CEEEEEEEECTTSSEEEEEEEETT-------
T ss_pred CCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCC---CEEEEEEEECCCCCEEEEEEcCCC-------
Confidence 345999999999876532 34678877 566666666542211100 012368999999999999876431
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
....+|+++|+++|+...+ +.....+..++|||||+. |+|++
T Consensus 148 --------------------------------~~~~~i~v~d~~tg~~~~~--~~~~~~~~~~~wspDg~~----l~~~~ 189 (710)
T 2xdw_A 148 --------------------------------SDWVTIKFMKVDGAKELPD--VLERVKFSCMAWTHDGKG----MFYNA 189 (710)
T ss_dssp --------------------------------CSCEEEEEEETTTTEEEEE--EEEEECSCCEEECTTSSE----EEEEE
T ss_pred --------------------------------CceEEEEEEECCCCCCCcc--cccCcccceEEEEeCCCE----EEEEE
Confidence 1235899999999998775 222333668999999999 99988
Q ss_pred ecCcce-eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecCCC---CccccceeecCCCCEEEEEec
Q 004149 263 WSSETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 263 ~~~~~~-~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~---~~~~~~p~~SpDG~~l~f~~~ 336 (771)
...... ..+.....++..+||++++ .++.. +.+... .....++.|||||++|+|.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~v~~~~l-----------------~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 190 YPQQDGKSDGTETSTNLHQKLYYHVL-----------------GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp CCCCSSCCSSSCCCCCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred ECCccccccccccccCCCCEEEEEEC-----------------CCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 543210 0011111234568999998 44442 222222 233568999999999999987
Q ss_pred CCCCCCCCccccccceeeecCC------CC--CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 337 KSSVDSGAHSATDSLHRIDWPT------NG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~------~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
+.. ....+||++|+.+ +. .+.++... + .....|++||+.|++.++
T Consensus 253 ~~~------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-----------~----------~~~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 253 EGC------DPVNRLWYCDLQQESNGITGILKWVKLIDNF-----------E----------GEYDYVTNEGTVFTFKTN 305 (710)
T ss_dssp CSS------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-----------S----------SCEEEEEEETTEEEEEEC
T ss_pred ccC------CCccEEEEEECcccccccCCccceEEeeCCC-----------C----------cEEEEEeccCCEEEEEEC
Confidence 531 1146899999876 32 22221110 0 012258999999999887
Q ss_pred eCC-eeEEEEEECCCCc---EEEecCCCC--CceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 409 WGS-SQVIISVNVSSGE---LLRITPAES--NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 409 ~~~-~~~l~~~d~~tg~---~~~l~~~~~--~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+. ...|+.+++++++ .+.++.... .+....++ +++.++++.... ...+|++.++.
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~-g~~~l~~~~~~ 367 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD-VKNTLQLHDLA 367 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEET-TEEEEEEEETT
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEEC-CEEEEEEEECC
Confidence 544 5689999998874 466665543 23333444 466777666543 33567777763
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=162.04 Aligned_cols=245 Identities=14% Similarity=0.105 Sum_probs=149.6
Q ss_pred cccccCCCce--EEEEEEecCCCCCCCCCcEEEEEcCCCCCC--CCC----------------cch-HHHHHH-HHCCcE
Q 004149 511 ANLTKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV--SLS----------------SYS-KSLAFL-SSVGYS 568 (771)
Q Consensus 511 ~~~~~~~g~~--l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~--~~~----------------~~~-~~~~~l-a~~G~~ 568 (771)
+.+.+.+|.+ ..+.++.|.+. ..+.|+|.|-||..+.. +.. .+. ..+..+ .++||+
T Consensus 80 Y~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~~~l~~G~~ 157 (462)
T 3guu_A 80 YRTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIGWALQQGYY 157 (462)
T ss_dssp EEEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHHHHHhCCCE
Confidence 3455666665 78899999863 23589999999944321 110 111 245566 899999
Q ss_pred EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC-CCCeEEEEEcChhHHHHHHHHHhC----CC-cee
Q 004149 569 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQA----PD-KFV 642 (771)
Q Consensus 569 V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~-d~~ri~l~G~S~GG~~a~~~a~~~----p~-~~~ 642 (771)
|+++||+|.+. .+. .+.....++.++++.+.....+ ...+++++|||+||..+++++... |+ .++
T Consensus 158 Vv~~Dy~G~G~---~y~------~~~~~~~~vlD~vrAa~~~~~~~~~~~v~l~G~S~GG~aal~aa~~~~~yapel~~~ 228 (462)
T 3guu_A 158 VVSSDHEGFKA---AFI------AGYEEGMAILDGIRALKNYQNLPSDSKVALEGYSGGAHATVWATSLAESYAPELNIV 228 (462)
T ss_dssp EEEECTTTTTT---CTT------CHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEEETHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred EEEecCCCCCC---ccc------CCcchhHHHHHHHHHHHHhccCCCCCCEEEEeeCccHHHHHHHHHhChhhcCccceE
Confidence 99999999543 221 1111122334444443333223 247999999999999999887754 33 588
Q ss_pred EEEecCCccchhhhhcCCCCC------------------cc------------------------hhhhh---ccC-CCC
Q 004149 643 AAAARNPLCNLALMVGTTDIP------------------DW------------------------CYVES---YGS-KGK 676 (771)
Q Consensus 643 a~v~~~p~~~~~~~~~~~~~~------------------~~------------------------~~~~~---~~~-~~~ 676 (771)
+++..++..++.......+.. +. |..+. +.. ...
T Consensus 229 g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~ 308 (462)
T 3guu_A 229 GASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLTYPFLNVF 308 (462)
T ss_dssp EEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHHCTTCCGG
T ss_pred EEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHhhccCCHH
Confidence 999999888764332111000 00 10000 000 000
Q ss_pred CcCCCCCC---hhhHHHHhhcCccc-----cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 677 DSFTESPS---VEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 677 ~~~~~~~~---~~~~~~~~~~sp~~-----~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
..+.+... ......+.+..... -..++++|+||+||.+|.+||+.+++++++.+++.|.+++++.|++++|.
T Consensus 309 ~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~~~y~~~~H~ 388 (462)
T 3guu_A 309 SLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANINFSPYPIAEHL 388 (462)
T ss_dssp GGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEESSCCHH
T ss_pred HHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEEEEECcCCcc
Confidence 01110000 01111111111101 12456799999999999999999999999999999999999999999997
Q ss_pred CCCCCChHHHHHHHHHHHHHHh
Q 004149 749 IERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 749 ~~~~~~~~~~~~~i~~wl~~~l 770 (771)
... ...+..+++||++++
T Consensus 389 ~~~----~~~~~d~l~WL~~r~ 406 (462)
T 3guu_A 389 TAE----IFGLVPSLWFIKQAF 406 (462)
T ss_dssp HHH----HHTHHHHHHHHHHHH
T ss_pred Cch----hhhHHHHHHHHHHHh
Confidence 642 234688999999876
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=159.31 Aligned_cols=217 Identities=15% Similarity=0.074 Sum_probs=130.4
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|+++||.|+++|+||. |.+... ......++++.+.+..+++.-. ..++
T Consensus 4 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G~---G~S~~~----~~~~~~~~~~a~dl~~~l~~l~-~~~~ 73 (257)
T 3c6x_A 4 AHFVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAAS---GVDPRQ----IEEIGSFDEYSEPLLTFLEALP-PGEK 73 (257)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTS---TTCSCC----GGGCCSHHHHTHHHHHHHHTSC-TTCC
T ss_pred CcEEEEcCCccC--cCCHHHHHHHHHhCCCEEEEeCCCCC---CCCCCC----cccccCHHHHHHHHHHHHHhcc-ccCC
Confidence 679999997754 44688889999999999999999994 443210 0011235555555555544421 1368
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch-----h----hhhc-CCCC-Ccch-hhh---------hccCCCC
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----A----LMVG-TTDI-PDWC-YVE---------SYGSKGK 676 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-----~----~~~~-~~~~-~~~~-~~~---------~~~~~~~ 676 (771)
+.|+||||||.+++.++.++|++++++|+.++.... . .... .... ..+. ... .......
T Consensus 74 ~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T 3c6x_A 74 VILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLL 153 (257)
T ss_dssp EEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHHHH
Confidence 999999999999999999999999999988764210 0 0000 0000 0000 000 0000000
Q ss_pred -CcCCCCCChhhHHHHh-hcCc-------------cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 677 -DSFTESPSVEDLTRFH-SKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 677 -~~~~~~~~~~~~~~~~-~~sp-------------~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+............. ...+ .......++|+|+++|++|..+|++.++.+.+.+. +.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~~----~~~~~~ 229 (257)
T 3c6x_A 154 RENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVYK 229 (257)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEEE
T ss_pred HHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccCHHHHHHHHHHCC----CCeEEE
Confidence 0000000111101000 0001 00001126899999999999999998888877764 368999
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++++||... .+...++.+.+.+|++++
T Consensus 230 i~~~gH~~~-~e~P~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 230 VEGGDHKLQ-LTKTKEIAEILQEVADTY 256 (257)
T ss_dssp CCSCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred eCCCCCCcc-cCCHHHHHHHHHHHHHhc
Confidence 999999876 344567888899998764
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-17 Score=171.88 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=131.9
Q ss_pred CCcEEEEEcCCCCCCCC---Ccch-----------HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC--CCcc-ccchh
Q 004149 536 CDPLIVVLHGGPHSVSL---SSYS-----------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--GKVG-SQDVN 598 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~---~~~~-----------~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~--~~~~-~~~~~ 598 (771)
+.|+||++||++..... ..|. ..+..|+++||.|+++|+||.+........... ..+. ...++
T Consensus 49 ~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~ 128 (354)
T 2rau_A 49 GNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWIS 128 (354)
T ss_dssp CEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHHH
T ss_pred CCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHHH
Confidence 46899999997765310 0222 678889999999999999994433211000000 0111 22357
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchhhhhcCC-----------------
Q 004149 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT----------------- 660 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~~~~~----------------- 660 (771)
|+.++++++.++ .+.++++|+|||+||.+++.++.++ |++++++|+.++...........
T Consensus 129 d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (354)
T 2rau_A 129 DIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAKGIY 206 (354)
T ss_dssp HHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHHTCC
T ss_pred HHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhhccc
Confidence 888888888765 3457899999999999999999998 99999999986542210000000
Q ss_pred ------CCC------------------------cchhhhhccCCCCCcCC-CCCChhhHH-HH------------hhcCc
Q 004149 661 ------DIP------------------------DWCYVESYGSKGKDSFT-ESPSVEDLT-RF------------HSKSP 696 (771)
Q Consensus 661 ------~~~------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~------------~~~sp 696 (771)
... .|.....+.......+. ......... .+ ...+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (354)
T 2rau_A 207 VIPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLERDL 286 (354)
T ss_dssp EEECSSSTTCTHHHHHHHSTTSCCSSTTSSSHHHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHTTTC
T ss_pred ccCCCchhhhHHHHHhccccccCccccchhhHHHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccCccc
Confidence 000 00000000000000000 000001111 11 11223
Q ss_pred cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--CCChHHHHHHHHHHHHHH
Q 004149 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER--PQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 697 ~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~~~~~~~~~i~~wl~~~ 769 (771)
...+.++++|+|+++|++|.++|. .++. + ....++++++++||.... ++...++.+.+.+||+++
T Consensus 287 ~~~l~~i~~P~Lii~G~~D~~~p~-~~~~----l---~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 287 KFDYEGILVPTIAFVSERFGIQIF-DSKI----L---PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp CCCCTTCCCCEEEEEETTTHHHHB-CGGG----S---CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred ccccccCCCCEEEEecCCCCCCcc-chhh----h---ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 345668999999999999997763 2222 2 235799999999997643 344568899999999875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-16 Score=164.37 Aligned_cols=248 Identities=11% Similarity=0.063 Sum_probs=157.0
Q ss_pred cceEEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 100 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
....|++ ||++|||+....+ ....++.++ .+++.+++ ... ..+.|||||++|||.+..
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~----------~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENA----------TMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESC----------EEEEECTTSSEEEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccC----------CCeEECCCCCEEEEEEec
Confidence 3567888 9999999875321 234577776 55554444 222 589999999999998754
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.. ....+||++|+++++.+.+ +.... +..+.|||||+.
T Consensus 80 ~~---------------------------------------~~~~~l~~~~~~~g~~~~l--~~~~~-~~~~~wspdg~~ 117 (347)
T 2gop_A 80 EE---------------------------------------KKVSEIWVADLETLSSKKI--LEAKN-IRSLEWNEDSRK 117 (347)
T ss_dssp TT---------------------------------------TTEEEEEEEETTTTEEEEE--EEESE-EEEEEECTTSSE
T ss_pred cC---------------------------------------CCcceEEEEECCCCceEEE--EcCCC-ccceeECCCCCE
Confidence 21 0236899999999998888 33333 788999999999
Q ss_pred CccEEEEEeecCcce-------e-----eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCcccc
Q 004149 254 LHQYLVFVGWSSETR-------K-----LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAF 320 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~-------~-----~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~ 320 (771)
|+|.+...... + .|..+......+||++|+ .+++. +.|+. . .+.
T Consensus 118 ----l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~-----------------~~~~~~~~l~~-~-~~~ 174 (347)
T 2gop_A 118 ----LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT-----------------ESEEVIEEFEK-P-RFS 174 (347)
T ss_dssp ----EEEEEECCCC---------CCCC---------CEEEEEEEET-----------------TTTEEEEEEEE-E-TTC
T ss_pred ----EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC-----------------CCCeEEeeecC-C-Ccc
Confidence 99987531000 0 010011112358999998 77777 77776 4 778
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccc-cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 399 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~d 399 (771)
.+.||||| |+|....... ..... ..+||.+| +++.+.++.. . .. ..+|||
T Consensus 175 ~~~~spdg--~~~~~~~~~~--~~~~~~~~~l~~~d--~~~~~~l~~~-~--------------------~~--~~~spd 225 (347)
T 2gop_A 175 SGIWHRDK--IVVNVPHREI--IPQYFKFWDIYIWE--DGKEEKMFEK-V--------------------SF--YAVDSD 225 (347)
T ss_dssp EEEEETTE--EEEEEECCCS--SCCSSCCEEEEEEE--TTEEEEEEEE-E--------------------SE--EEEEEC
T ss_pred cccCCCCe--EEEEEecccc--cccccccccEEEeC--CCceEEeccC-c--------------------ce--eeECCC
Confidence 89999999 7777754310 00001 45789888 4443333211 0 01 124999
Q ss_pred CCEEEEEeeeC-----CeeEEEEEECCCCcEEEecCCC-CCcee-eEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 400 GCTMLLSSIWG-----SSQVIISVNVSSGELLRITPAE-SNFSW-SLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 400 g~~l~~~~~~~-----~~~~l~~~d~~tg~~~~l~~~~-~~~~~-~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
|+.|++.+... ....||.+| +++.+.++... ..+.. ..|+ |+ ++++.+... ..+|| .+
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~-~~~l~-~~ 290 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEG-SVNLY-IW 290 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETT-EEEEE-EE
T ss_pred CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCC-cEEEE-Ec
Confidence 99998887543 246899999 78888887653 23332 5677 65 655554333 34566 54
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-15 Score=157.17 Aligned_cols=243 Identities=14% Similarity=0.110 Sum_probs=163.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....++|||||++|++....+ ..+..++ ..++..+.+.....+ .+++|||||++|++....
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~~~----- 94 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHS---NDVSIIDTATNNVIATVPAGSSP----------QGVAVSPDGKQVYVTNMA----- 94 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT-----
T ss_pred CcceEEECCCCCEEEEECCCC---CeEEEEECCCCeEEEEEECCCCc----------cceEECCCCCEEEEEECC-----
Confidence 467899999999987665332 2344433 345555544443333 589999999999886422
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...|++||+.+++.... ......+..++|+|||+. |
T Consensus 95 --------------------------------------~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 130 (391)
T 1l0q_A 95 --------------------------------------SSTLSVIDTTSNTVAGT--VKTGKSPLGLALSPDGKK----L 130 (391)
T ss_dssp --------------------------------------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----E
T ss_pred --------------------------------------CCEEEEEECCCCeEEEE--EeCCCCcceEEECCCCCE----E
Confidence 26799999999987666 344456788999999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++++. ....|+++|+ .+++.............+.|+|||+.|++....+
T Consensus 131 ~~~~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 131 YVTNN--------------GDKTVSVINT-----------------VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp EEEET--------------TTTEEEEEET-----------------TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred EEEeC--------------CCCEEEEEEC-----------------CCCcEEEEEecCCCcceEEECCCCCEEEEEeCCC
Confidence 76652 2347999998 5665544433344567899999999887665432
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|+++|+.+++...... . . ..+..++|+|||+.|++.........|+.+
T Consensus 180 ----------~~v~~~d~~~~~~~~~~~----------~---~-------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 180 ----------MSISVIDTVTNSVIDTVK----------V---E-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp ----------TEEEEEETTTTEEEEEEE----------C---S-------SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ----------CEEEEEECCCCeEEEEEe----------c---C-------CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 469999988765321110 0 0 013356899999988877653345678888
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|+.+++...............++++++.++++.+.. ..+.+.++.++
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~ 276 (391)
T 1l0q_A 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX---NTVSVIDTATN 276 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC---CEEEEEECCCC
Confidence 998887665554444445568899999887776433 46777776543
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=156.38 Aligned_cols=227 Identities=16% Similarity=0.202 Sum_probs=132.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++...- ..|.||++||.+.+ ...|...+..|++. |.|+++|+|| +|.+... .........
T Consensus 17 ~g~~l~y~~~G--------~g~~lvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~-~~~~~~~~~ 81 (294)
T 1ehy_A 17 PDVKIHYVREG--------AGPTLLLLHGWPGF--WWEWSKVIGPLAEH-YDVIVPDLRG---FGDSEKP-DLNDLSKYS 81 (294)
T ss_dssp SSCEEEEEEEE--------CSSEEEEECCSSCC--GGGGHHHHHHHHTT-SEEEEECCTT---STTSCCC-CTTCGGGGC
T ss_pred CCEEEEEEEcC--------CCCEEEEECCCCcc--hhhHHHHHHHHhhc-CEEEecCCCC---CCCCCCC-ccccccCcC
Confidence 56677654432 23789999997765 45788888888776 9999999999 5544321 000001234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc-hh-hhhcCC-CCCcch-------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LA-LMVGTT-DIPDWC------- 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~-~~-~~~~~~-~~~~~~------- 666 (771)
++++.+.+..+++.- +.+++.|+||||||.+++.+|.++|++++++|+.++... .. ...... ....|.
T Consensus 82 ~~~~a~dl~~ll~~l--~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (294)
T 1ehy_A 82 LDKAADDQAALLDAL--GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQLD 159 (294)
T ss_dssp HHHHHHHHHHHHHHT--TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchhhccchhccCceEEEecCcc
Confidence 566666665555552 346899999999999999999999999999999886321 10 000000 000010
Q ss_pred h---------------hhhccCCCCCcCCCCCChhhHHHHh-----------------h--cCccc-----cccCCCCcE
Q 004149 667 Y---------------VESYGSKGKDSFTESPSVEDLTRFH-----------------S--KSPIS-----HISKVKTPT 707 (771)
Q Consensus 667 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~--~sp~~-----~~~~i~~P~ 707 (771)
. ...+....... ......+....+. . ..... .+.++++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 238 (294)
T 1ehy_A 160 MAVEVVGSSREVCKKYFKHFFDHWSYR-DELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLPV 238 (294)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTSSS-SCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBCSCE
T ss_pred hhHHHhccchhHHHHHHHHHhhcccCC-CCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHhhhhhhcCCcccCcCCCCE
Confidence 0 00000000000 0000111111110 0 00001 233789999
Q ss_pred EEEeeCCCCccCc-HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 708 IFLLGAQDLRVPV-SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 708 Lii~G~~D~~vp~-~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
|+++|++|..+|+ .....+.+.+ ...++++++++||.... +...++.+.|.+||
T Consensus 239 Lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl 293 (294)
T 1ehy_A 239 TMIWGLGDTCVPYAPLIEFVPKYY----SNYTMETIEDCGHFLMV-EKPEIAIDRIKTAF 293 (294)
T ss_dssp EEEEECCSSCCTTHHHHHHHHHHB----SSEEEEEETTCCSCHHH-HCHHHHHHHHHHHC
T ss_pred EEEEeCCCCCcchHHHHHHHHHHc----CCCceEEeCCCCCChhh-hCHHHHHHHHHHHh
Confidence 9999999999884 4444544433 34899999999997653 33456777777775
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=163.94 Aligned_cols=230 Identities=15% Similarity=0.060 Sum_probs=137.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
-+|..++...+. +.|+||++||.+.. ...|...+..|++ +|.|+++|+||.+ .+..... ......
T Consensus 15 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G---~S~~~~~-~~~~~~ 79 (297)
T 2qvb_A 15 IAGKRMAYIDEG--------KGDAIVFQHGNPTS--SYLWRNIMPHLEG-LGRLVACDLIGMG---ASDKLSP-SGPDRY 79 (297)
T ss_dssp ETTEEEEEEEES--------SSSEEEEECCTTCC--GGGGTTTGGGGTT-SSEEEEECCTTST---TSCCCSS-CSTTSS
T ss_pred ECCEEEEEEecC--------CCCeEEEECCCCch--HHHHHHHHHHHhh-cCeEEEEcCCCCC---CCCCCCC-ccccCc
Confidence 356777655442 24889999997765 3356666677755 5999999999944 4321110 011113
Q ss_pred chhhHHHHHHHHHHcCCCCC-CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC----------CCCc
Q 004149 596 DVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT----------DIPD 664 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~----------~~~~ 664 (771)
..+++.+.+..+++. ++. +++.|+|||+||.+++.++.++|++++++|+.+|........... ..+.
T Consensus 80 ~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (297)
T 2qvb_A 80 SYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSPQ 157 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHHHHHhccc
Confidence 455555555555554 244 789999999999999999999999999999998865311000000 0000
Q ss_pred -c-------hhhhhcc-----CCC--------CCcCCCC-CChhhH-HHHhhc--------------CccccccCCCCcE
Q 004149 665 -W-------CYVESYG-----SKG--------KDSFTES-PSVEDL-TRFHSK--------------SPISHISKVKTPT 707 (771)
Q Consensus 665 -~-------~~~~~~~-----~~~--------~~~~~~~-~~~~~~-~~~~~~--------------sp~~~~~~i~~P~ 707 (771)
. .+...+. ... ...+... ...... ..+... +....+.++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 237 (297)
T 2qvb_A 158 GEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETDMPK 237 (297)
T ss_dssp HHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCSCE
T ss_pred chhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhcccccccE
Confidence 0 0000000 000 0000000 000000 011111 1123456789999
Q ss_pred EEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 708 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
|+++|++|..+|++.++.+.+.+ .. +++++ +++|.+.. +...++.+.+.+||++.
T Consensus 238 lii~G~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~~~-~~p~~~~~~i~~fl~~~ 292 (297)
T 2qvb_A 238 LFINAEPGAIITGRIRDYVRSWP----NQ-TEITV-PGVHFVQE-DSPEEIGAAIAQFVRRL 292 (297)
T ss_dssp EEEEEEECSSSCHHHHHHHHTSS----SE-EEEEE-EESSCGGG-TCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcCCHHHHHHHHHHc----CC-eEEEe-cCccchhh-hCHHHHHHHHHHHHHHH
Confidence 99999999999988777665544 23 78888 99998664 45668889999999875
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=162.25 Aligned_cols=219 Identities=16% Similarity=0.160 Sum_probs=131.4
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|+||++||.+.+ ...|...+..|++ +|.|+++|+||. |.+...... ......++++.+.+..+++. ++.++
T Consensus 21 ~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~---G~S~~~~~~-~~~~~~~~~~a~dl~~~l~~--l~~~~ 91 (271)
T 1wom_A 21 ASIMFAPGFGCD--QSVWNAVAPAFEE-DHRVILFDYVGS---GHSDLRAYD-LNRYQTLDGYAQDVLDVCEA--LDLKE 91 (271)
T ss_dssp SEEEEECCTTCC--GGGGTTTGGGGTT-TSEEEECCCSCC---SSSCCTTCC-TTGGGSHHHHHHHHHHHHHH--TTCSC
T ss_pred CcEEEEcCCCCc--hhhHHHHHHHHHh-cCeEEEECCCCC---CCCCCCccc-ccccccHHHHHHHHHHHHHH--cCCCC
Confidence 789999996654 3456666777765 799999999994 443211100 00112344444444444443 23578
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh----hhcCCCCCcc-hhhhh-------ccCCCCC-cCCCCCC
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MVGTTDIPDW-CYVES-------YGSKGKD-SFTESPS 684 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~----~~~~~~~~~~-~~~~~-------~~~~~~~-~~~~~~~ 684 (771)
+.|+||||||.+++.++.++|++++++|+.++...... +......... ..... +...... .+.....
T Consensus 92 ~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (271)
T 1wom_A 92 TVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDR 171 (271)
T ss_dssp EEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTTC
T ss_pred eEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999887521100 0000000000 00000 0000000 0000000
Q ss_pred hhhHH----H---------------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 685 VEDLT----R---------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 685 ~~~~~----~---------------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
..... . ....+....+.++++|+|+++|++|..+|++.++.+.+.+. ..++++++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~ 247 (271)
T 1wom_A 172 PEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP----YSSLKQMEAR 247 (271)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHSS----SEEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHCC----CCEEEEeCCC
Confidence 00000 0 01112223467899999999999999999888777766654 3799999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHHHh
Q 004149 746 VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
||.... +...++.+.+.+|+++++
T Consensus 248 gH~~~~-e~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 248 GHCPHM-SHPDETIQLIGDYLKAHV 271 (271)
T ss_dssp SSCHHH-HCHHHHHHHHHHHHHHHC
T ss_pred CcCccc-cCHHHHHHHHHHHHHhcC
Confidence 997653 345678899999998864
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=162.67 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=135.6
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.-+|..+++..+. ..|+||++||++.+ ...|...+..|++. |.|+++|+||.+ .+... ...
T Consensus 16 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G~G---~S~~~-----~~~ 76 (301)
T 3kda_A 16 EVDGVKLHYVKGG--------QGPLVMLVHGFGQT--WYEWHQLMPELAKR-FTVIAPDLPGLG---QSEPP-----KTG 76 (301)
T ss_dssp EETTEEEEEEEEE--------SSSEEEEECCTTCC--GGGGTTTHHHHTTT-SEEEEECCTTST---TCCCC-----SSC
T ss_pred eeCCeEEEEEEcC--------CCCEEEEECCCCcc--hhHHHHHHHHHHhc-CeEEEEcCCCCC---CCCCC-----CCC
Confidence 3367777765543 34789999998765 45677788888887 999999999954 43211 122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC------CCCcchh
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT------DIPDWCY 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~------~~~~~~~ 667 (771)
...+++.+.+..+++. ++.++ +.|+||||||.+++.++.++|++++++|+.+|........... ....|..
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
T 3kda_A 77 YSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWHF 154 (301)
T ss_dssp SSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSBSEETTEECSSTHH
T ss_pred ccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchhhhcchhhhhhhhH
Confidence 2455555555555443 23456 9999999999999999999999999999999863211110000 0000100
Q ss_pred ---------hhhccC--------CCCCcCCC---CCChhhHHHHhh-------------------------cCccccccC
Q 004149 668 ---------VESYGS--------KGKDSFTE---SPSVEDLTRFHS-------------------------KSPISHISK 702 (771)
Q Consensus 668 ---------~~~~~~--------~~~~~~~~---~~~~~~~~~~~~-------------------------~sp~~~~~~ 702 (771)
...... ........ ....+....+.. ......+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (301)
T 3kda_A 155 SFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNESVRQNAELAKTRLQ 234 (301)
T ss_dssp HHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHHHHHHHHHTTSCBC
T ss_pred HHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccchhhcccchhhccc
Confidence 000000 00000000 000111111100 000112338
Q ss_pred CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 703 i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+++|+|+++|++| +++.....+.+. ..++++++++++||.+. .+...++.+.|.+|+++.
T Consensus 235 i~~P~l~i~G~~D--~~~~~~~~~~~~----~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~~l~~~ 294 (301)
T 3kda_A 235 MPTMTLAGGGAGG--MGTFQLEQMKAY----AEDVEGHVLPGCGHWLP-EECAAPMNRLVIDFLSRG 294 (301)
T ss_dssp SCEEEEEECSTTS--CTTHHHHHHHTT----BSSEEEEEETTCCSCHH-HHTHHHHHHHHHHHHTTS
T ss_pred cCcceEEEecCCC--CChhHHHHHHhh----cccCeEEEcCCCCcCch-hhCHHHHHHHHHHHHhhC
Confidence 8999999999999 665655554433 34589999999999875 344567888888888653
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=144.75 Aligned_cols=171 Identities=12% Similarity=0.121 Sum_probs=121.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
+.|.||++||.+.... ..|...+..+...+ +.++++| ++ ....+++.+.+..+.+.. +
T Consensus 16 ~~~~vv~~HG~~~~~~-~~~~~~~~~~~~~~---~~v~~~~---~~------------~~~~~~~~~~~~~~~~~~--~- 73 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD-EHWQSHWERRFPHW---QRIRQRE---WY------------QADLDRWVLAIRRELSVC--T- 73 (191)
T ss_dssp TTCEEEEECCTTCCCT-TSHHHHHHHHCTTS---EECCCSC---CS------------SCCHHHHHHHHHHHHHTC--S-
T ss_pred CCceEEEECCCCCCch-hhHHHHHHHhcCCe---EEEeccC---CC------------CcCHHHHHHHHHHHHHhc--C-
Confidence 4588999999775531 34544444333333 4556666 21 123556666666665542 3
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcC
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 695 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|....... + +.
T Consensus 74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~--------------~-----------~~----------- 117 (191)
T 3bdv_A 74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFE--------------I-----------DD----------- 117 (191)
T ss_dssp SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGT--------------C-----------TT-----------
T ss_pred CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCcccccc--------------C-----------cc-----------
Confidence 78999999999999999999999999999999997643210 0 00
Q ss_pred ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC--CChHHHHHHHHHHHHHHh
Q 004149 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 696 p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~wl~~~l 770 (771)
...+.++++|+|+++|++|..+|++.++.+.+.+ +++++++++++|.+... ....+.++.+.+||++..
T Consensus 118 -~~~~~~~~~P~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~~ 188 (191)
T 3bdv_A 118 -RIQASPLSVPTLTFASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEILI 188 (191)
T ss_dssp -TSCSSCCSSCEEEEECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTTC
T ss_pred -ccccccCCCCEEEEecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHhc
Confidence 0335678899999999999999999999988876 27899999999987542 133456688888987653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-15 Score=174.94 Aligned_cols=270 Identities=13% Similarity=0.102 Sum_probs=168.5
Q ss_pred ceEEEeCCCCCeEEEEecCCCC-CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...+.++|||++++|+++..+. ...+|.+. .++..+.+++...-..+. ...+.+++|||||++|||......
T Consensus 70 ~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~---~~~~~~~~~SPDG~~la~~~~~~G--- 143 (695)
T 2bkl_A 70 DSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG---TVSLGTWAVSWDGKKVAFAQKPNA--- 143 (695)
T ss_dssp CEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSS---CEEEEEEEECTTSSEEEEEEEETT---
T ss_pred ccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCC---CEEEEEEEECCCCCEEEEEECCCC---
Confidence 3455667999999999887632 45678887 567777777653211000 012368999999999999876431
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.....|+++|+++|+..... .........++|||||+. |
T Consensus 144 ------------------------------------~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~----l 182 (695)
T 2bkl_A 144 ------------------------------------ADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKG----F 182 (695)
T ss_dssp ------------------------------------CSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSE----E
T ss_pred ------------------------------------CceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCE----E
Confidence 13479999999999875111 111222368999999999 9
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecCCC---CccccceeecCCCCEEEE
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~---~~~~~~p~~SpDG~~l~f 333 (771)
+|++...... +.....++..+||++++ .++.. +.+... .....++.|||||++|++
T Consensus 183 ~~~~~d~~~~--~~~~~~~~~~~v~~~~l-----------------~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 183 YYEWLPTDPS--IKVDERPGYTTIRYHTL-----------------GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp EEEECCCCTT--SCGGGGGGGCEEEEEET-----------------TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEE
T ss_pred EEEEecCCCC--CccccCCCCCEEEEEEC-----------------CCCchhceEEEecCCCCEEEEEEEECCCCCEEEE
Confidence 9998543200 00011134558999998 54442 233322 235678999999999999
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-Ce
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SS 412 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~-~~ 412 (771)
.+.+.. ...+||+++..+++.+.++.... ....+.| +||+ |++.++.+ ..
T Consensus 244 ~~~~~~-------~~~~l~~~~~~~~~~~~l~~~~~--------------------~~~~~~~-~~g~-l~~~s~~~~~~ 294 (695)
T 2bkl_A 244 YILRGW-------SENDVYWKRPGEKDFRLLVKGVG--------------------AKYEVHA-WKDR-FYVLTDEGAPR 294 (695)
T ss_dssp EEEETT-------TEEEEEEECTTCSSCEEEEECSS--------------------CCEEEEE-ETTE-EEEEECTTCTT
T ss_pred EEeCCC-------CceEEEEEcCCCCceEEeecCCC--------------------ceEEEEe-cCCc-EEEEECCCCCC
Confidence 987641 25689999876655444322110 1112334 7888 88877644 46
Q ss_pred eEEEEEECCCCcE---EEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 413 QVIISVNVSSGEL---LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 413 ~~l~~~d~~tg~~---~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
..|+.+++++++. +.+...........++..++.++++... +...+|++.++.
T Consensus 295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~-dg~~~l~~~~~~ 350 (695)
T 2bkl_A 295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLK-DATSEVRVATLK 350 (695)
T ss_dssp CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEE-TTEEEEEEEETT
T ss_pred CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEE-CCEEEEEEEeCC
Confidence 7899999988763 6666543221222333346777766643 334567777753
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=156.11 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=78.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++...-++ ..|.||++||+++...... ....+...||.|+++|+|| +|.+... .......
T Consensus 20 ~g~~l~y~~~G~~------~g~pvvllHG~~~~~~~~~---~~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~ 84 (313)
T 1azw_A 20 DRHTLYFEQCGNP------HGKPVVMLHGGPGGGCNDK---MRRFHDPAKYRIVLFDQRG---SGRSTPH---ADLVDNT 84 (313)
T ss_dssp SSCEEEEEEEECT------TSEEEEEECSTTTTCCCGG---GGGGSCTTTEEEEEECCTT---STTSBST---TCCTTCC
T ss_pred CCCEEEEEecCCC------CCCeEEEECCCCCccccHH---HHHhcCcCcceEEEECCCC---CcCCCCC---ccccccc
Confidence 5666765544321 2366999999765432211 1233445799999999999 5544211 1111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
.+++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++..
T Consensus 85 ~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~~ 137 (313)
T 1azw_A 85 TWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEecccc
Confidence 55555555555555 234689999999999999999999999999999987653
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=144.99 Aligned_cols=169 Identities=16% Similarity=0.085 Sum_probs=122.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCc---EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~---~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.|+||++||.+.. ...|...+..|+++|| .|+++|+||.+.... ...+++.+.+..+.+. .
T Consensus 3 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCC--HhHHHHHHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--c
Confidence 4779999997655 4568888899999998 699999999443211 2345566666655554 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHH
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 691 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (771)
+.+++.|+||||||.+++.++.++ |++++++|+.+|....... . .+ +.
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~------------~--------~~---~~------- 116 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG------------K--------AL---PG------- 116 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS------------B--------CC---CC-------
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccc------------c--------cC---CC-------
Confidence 457899999999999999999988 8899999999987542110 0 00 00
Q ss_pred hhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 692 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 692 ~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
. ....++|+|+++|++|.++|++.+. -...+++++++++|.+.... . ++.+.+.+||++.
T Consensus 117 --~-----~~~~~~p~l~i~G~~D~~v~~~~~~---------~~~~~~~~~~~~gH~~~~~~-~-~~~~~i~~fl~~~ 176 (181)
T 1isp_A 117 --T-----DPNQKILYTSIYSSADMIVMNYLSR---------LDGARNVQIHGVGHIGLLYS-S-QVNSLIKEGLNGG 176 (181)
T ss_dssp --S-----CTTCCCEEEEEEETTCSSSCHHHHC---------CBTSEEEEESSCCTGGGGGC-H-HHHHHHHHHHTTT
T ss_pred --C-----CCccCCcEEEEecCCCccccccccc---------CCCCcceeeccCchHhhccC-H-HHHHHHHHHHhcc
Confidence 0 0123579999999999999987432 23478899999999876444 3 7889999998753
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-15 Score=173.98 Aligned_cols=270 Identities=12% Similarity=0.115 Sum_probs=169.9
Q ss_pred ceEEEeCCCCCeEEEEecCCCC-CCeEEEEe-c---CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENE-SPIQFELW-S---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
...+.++|||++++|+++..+. ...+|.+. . ++..+.+++...-..+. +..+.+++|||||++|||......
T Consensus 109 ~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDG~~la~~~~~~G 185 (741)
T 1yr2_A 109 ERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDG---ATALDAWAASDDGRLLAYSVQDGG 185 (741)
T ss_dssp CEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC-------EEEEEEEECTTSSEEEEEEEETT
T ss_pred cccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCC---CEEEEeEEECCCCCEEEEEEcCCC
Confidence 4455667999999999986532 46778887 4 56667776653211100 012368999999999999876531
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
....+|+++|+++|+.... .........++|||| +.
T Consensus 186 ---------------------------------------~e~~~i~v~dl~tg~~~~~--~~~~~~~~~~~wspD-~~-- 221 (741)
T 1yr2_A 186 ---------------------------------------SDWRTVKFVGVADGKPLAD--ELKWVKFSGLAWLGN-DA-- 221 (741)
T ss_dssp ---------------------------------------CSEEEEEEEETTTCCEEEE--EEEEEESCCCEESTT-SE--
T ss_pred ---------------------------------------CceEEEEEEECCCCCCCCc--cCCCceeccEEEECC-CE--
Confidence 1236899999999987665 222223467899999 98
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecCCCC---ccccceeecCCCCE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTESI---SSAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~~---~~~~~p~~SpDG~~ 330 (771)
|+|++..... +.+.....++..+||++++ .++.. +.+.... ....++.|||||++
T Consensus 222 --l~~~~~~~~~-~~~~~~~~~~~~~v~~~~l-----------------gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~ 281 (741)
T 1yr2_A 222 --LLYSRFAEPK-EGQAFQALNYNQTVWLHRL-----------------GTPQSADQPVFATPELPKRGHGASVSSDGRW 281 (741)
T ss_dssp --EEEEECCCC---------CCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred --EEEEEecCcc-cccccccCCCCCEEEEEEC-----------------CCCchhCEEEeccCCCCeEEEEEEECCCCCE
Confidence 9998753321 1111122344568999998 44432 2232222 23678999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCC--C-CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTN--G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
|+|.+.+.. ....+||++|+.++ + .+.++... +. . ...+++||+.|++.+
T Consensus 282 l~~~~~~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~-----------~~---------~-~~~~~~dg~~l~~~s 334 (741)
T 1yr2_A 282 VVITSSEGT------DPVNTVHVARVTNGKIGPVTALIPDL-----------KA---------Q-WDFVDGVGDQLWFVS 334 (741)
T ss_dssp EEEEEECTT------CSCCEEEEEEEETTEECCCEEEECSS-----------SS---------C-EEEEEEETTEEEEEE
T ss_pred EEEEEEccC------CCcceEEEEECCCCCCcccEEecCCC-----------Cc---------e-EEEEeccCCEEEEEE
Confidence 999987641 12568999999876 3 33332111 00 1 112568999999988
Q ss_pred eeCC-eeEEEEEECCCC--cEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 408 IWGS-SQVIISVNVSSG--ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 408 ~~~~-~~~l~~~d~~tg--~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+.+. ..+|+.++++++ +.+.++..... ....++..++.++++.... .-.+|++.++.
T Consensus 335 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~d-g~~~l~~~~~~ 394 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHD-AKSQVLAFDLD 394 (741)
T ss_dssp CTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEET-TEEEEEEEETT
T ss_pred CCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEEC-CEEEEEEEeCC
Confidence 7544 678999999884 56777655432 2233455577777776543 33567777753
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=159.11 Aligned_cols=217 Identities=15% Similarity=0.124 Sum_probs=130.5
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..+.|+||++||++.. ...|...+..|++ +|.|+++|+|| +|.+... .....++++.+.+..+++. .
T Consensus 17 ~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~G---~G~s~~~-----~~~~~~~~~~~~~~~~l~~--~ 83 (267)
T 3fla_A 17 PDARARLVCLPHAGGS--ASFFFPLAKALAP-AVEVLAVQYPG---RQDRRHE-----PPVDSIGGLTNRLLEVLRP--F 83 (267)
T ss_dssp TTCSEEEEEECCTTCC--GGGGHHHHHHHTT-TEEEEEECCTT---SGGGTTS-----CCCCSHHHHHHHHHHHTGG--G
T ss_pred CCCCceEEEeCCCCCC--chhHHHHHHHhcc-CcEEEEecCCC---CCCCCCC-----CCCcCHHHHHHHHHHHHHh--c
Confidence 4567999999997664 4577778888865 49999999999 5554321 1122455555555554444 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCc----eeEEEecCCccchhhhhcC-CCCCcchhhhhccCCC-C-CcCCCCCC--
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGT-TDIPDWCYVESYGSKG-K-DSFTESPS-- 684 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~a~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~-- 684 (771)
+.+++.|+|||+||.+++.++.++|++ ++++++.++.......... .......+...+.... . ......+.
T Consensus 84 ~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (267)
T 3fla_A 84 GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPELL 163 (267)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHHH
T ss_pred CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHHH
Confidence 457899999999999999999999986 8888887765321111000 0000000000000000 0 00000000
Q ss_pred -------hhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHH
Q 004149 685 -------VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFE 757 (771)
Q Consensus 685 -------~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 757 (771)
...........+.. ...+++|+|+++|++|..+|++.+..+.+.+.. +++++++++ +|.+.. +...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~g-gH~~~~-~~~~~ 237 (267)
T 3fla_A 164 AMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVSVGEARAWEEHTTG---PADLRVLPG-GHFFLV-DQAAP 237 (267)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCCHHHHHGGGGGBSS---CEEEEEESS-STTHHH-HTHHH
T ss_pred HHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC---CceEEEecC-Cceeec-cCHHH
Confidence 00000111111111 156889999999999999998877776655432 489999998 997653 34567
Q ss_pred HHHHHHHHHHHH
Q 004149 758 SFLNIGLWFKKY 769 (771)
Q Consensus 758 ~~~~i~~wl~~~ 769 (771)
+.+.+.+||++.
T Consensus 238 ~~~~i~~fl~~~ 249 (267)
T 3fla_A 238 MIATMTEKLAGP 249 (267)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHhccc
Confidence 788888888654
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=151.81 Aligned_cols=203 Identities=17% Similarity=0.125 Sum_probs=126.7
Q ss_pred CCcEEEEEcCCCCCCCCCcch----HHHHHHHHCCcEEEEECCCCCCC------------------CCh--hhhhcCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSLG------------------FGE--EALQSLPGK 591 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~----~~~~~la~~G~~V~~~d~rG~~~------------------~g~--~~~~~~~~~ 591 (771)
+.|.||++||.+.+. ..|. .+...|.++||.|+.+|+|+... +|. .|.. .
T Consensus 4 ~~~~vl~lHG~g~~~--~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~----~ 77 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNG--KVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFY----H 77 (243)
T ss_dssp CCCEEEEECCTTCCH--HHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSC----C
T ss_pred cCceEEEeCCCCccH--HHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCccccc----C
Confidence 468999999976542 2333 35566777799999999993211 111 1110 0
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC------CceeEEEecCCccchhhhhcCCCCCcc
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
.......|+.++++++.+....+..+++|+||||||.+|+.++.+++ ..++++++.++........ ...
T Consensus 78 ~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~---~~~-- 152 (243)
T 1ycd_A 78 SEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP---EHP-- 152 (243)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT---TST--
T ss_pred CCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc---ccc--
Confidence 11123456666666666532223468999999999999999998642 2466777776654221100 000
Q ss_pred hhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC---CCEEEEEe
Q 004149 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG---VETKVIVF 742 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g---~~~~~~~~ 742 (771)
+. . .+ .. .+ ......+.++++|+|++||++|.++|+++++.+++.+...+ .....+++
T Consensus 153 ------~~--~-~~-----~~---~~--~~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~ 213 (243)
T 1ycd_A 153 ------GE--L-RI-----TE---KF--RDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYE 213 (243)
T ss_dssp ------TC--E-EE-----CG---GG--TTTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEE
T ss_pred ------cc--c-cc-----ch---hH--HHhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEe
Confidence 00 0 00 00 00 01122345688999999999999999999999999998741 11234456
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 743 PNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++++|.+... ..+++.+.+||+++++
T Consensus 214 ~~~gH~~~~~---~~~~~~i~~fl~~~~~ 239 (243)
T 1ycd_A 214 HPGGHMVPNK---KDIIRPIVEQITSSLQ 239 (243)
T ss_dssp ESSSSSCCCC---HHHHHHHHHHHHHHHC
T ss_pred cCCCCcCCch---HHHHHHHHHHHHHhhh
Confidence 6789987533 3588999999998764
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-16 Score=161.18 Aligned_cols=229 Identities=11% Similarity=0.039 Sum_probs=138.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++....+. +.|+||++||.+.. ...|...+..|++. |.|+++|+||.+ .+..... .....
T Consensus 15 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G~G---~S~~~~~-~~~~~ 79 (302)
T 1mj5_A 15 EIKGRRMAYIDEG--------TGDPILFQHGNPTS--SYLWRNIMPHCAGL-GRLIACDLIGMG---DSDKLDP-SGPER 79 (302)
T ss_dssp EETTEEEEEEEES--------CSSEEEEECCTTCC--GGGGTTTGGGGTTS-SEEEEECCTTST---TSCCCSS-CSTTS
T ss_pred EECCEEEEEEEcC--------CCCEEEEECCCCCc--hhhhHHHHHHhccC-CeEEEEcCCCCC---CCCCCCC-CCccc
Confidence 3457777655442 14889999997765 34566666777654 899999999944 4321110 01111
Q ss_pred cchhhHHHHHHHHHHcCCCCC-CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCC----------C
Q 004149 595 QDVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI----------P 663 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~----------~ 663 (771)
...+++.+.+..+++. ++. +++.|+|||+||.+++.++.++|++++++|+.+|............. +
T Consensus 80 ~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (302)
T 1mj5_A 80 YAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQ 157 (302)
T ss_dssp SCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHHST
T ss_pred ccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHhcc
Confidence 3456666666655555 234 78999999999999999999999999999999886531100000000 0
Q ss_pred -cc-------hhhhhccCCCCCcCCCCCChhhH-----------------HH-Hhhc--------------CccccccCC
Q 004149 664 -DW-------CYVESYGSKGKDSFTESPSVEDL-----------------TR-FHSK--------------SPISHISKV 703 (771)
Q Consensus 664 -~~-------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~--------------sp~~~~~~i 703 (771)
.. .+...+... ........+.. .. +... +....+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 234 (302)
T 1mj5_A 158 AGEELVLQDNVFVEQVLPG---LILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSES 234 (302)
T ss_dssp THHHHHTTTCHHHHTHHHH---TSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTC
T ss_pred chhhhhcChHHHHHHHHHh---cCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhcc
Confidence 00 000000000 00000000000 00 0010 112346778
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
++|+|+++|++|.++|++.++.+.+.+ .. +++++ ++||.+.. +...++.+.+.+|+++..
T Consensus 235 ~~P~l~i~g~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~~~-e~p~~~~~~i~~fl~~~~ 294 (302)
T 1mj5_A 235 PIPKLFINAEPGALTTGRMRDFCRTWP----NQ-TEITV-AGAHFIQE-DSPDEIGAAIAAFVRRLR 294 (302)
T ss_dssp CSCEEEEEEEECSSSSHHHHHHHTTCS----SE-EEEEE-EESSCGGG-TCHHHHHHHHHHHHHHHS
T ss_pred CCCeEEEEeCCCCCCChHHHHHHHHhc----CC-ceEEe-cCcCcccc-cCHHHHHHHHHHHHHhhc
Confidence 999999999999999987776665544 23 78888 99998664 446688899999998753
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-16 Score=156.55 Aligned_cols=226 Identities=11% Similarity=0.108 Sum_probs=132.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++++....+ ...|+||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+... .....
T Consensus 7 ~g~~l~~~~~g~------~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G---~G~S~~~-----~~~~~ 69 (264)
T 3ibt_A 7 NGTLMTYSESGD------PHAPTLFLLSGWCQD--HRLFKNLAPLLAR-DFHVICPDWRG---HDAKQTD-----SGDFD 69 (264)
T ss_dssp TTEECCEEEESC------SSSCEEEEECCTTCC--GGGGTTHHHHHTT-TSEEEEECCTT---CSTTCCC-----CSCCC
T ss_pred CCeEEEEEEeCC------CCCCeEEEEcCCCCc--HhHHHHHHHHHHh-cCcEEEEcccc---CCCCCCC-----ccccC
Confidence 456666554433 235789999997765 3467778888854 59999999999 4444221 12234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchh-----hhhcCCCCCcchh---
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLA-----LMVGTTDIPDWCY--- 667 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~-----~~~~~~~~~~~~~--- 667 (771)
.+++.+.+..+++. .+.+++.|+|||+||.+++.++.++ |++++++|+.+|..... .+........+..
T Consensus 70 ~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (264)
T 3ibt_A 70 SQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQLAEGQHPTEYVAGRQ 147 (264)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchhhcccChhhHHHHHH
Confidence 55555555555554 2456899999999999999999999 99999999998765110 0000000000100
Q ss_pred --hhhc-cCCC--------CCcCCCCCChhhHH----HH-----hhcCccccccCCCCcEEEEeeCCCC--ccCcHHHHH
Q 004149 668 --VESY-GSKG--------KDSFTESPSVEDLT----RF-----HSKSPISHISKVKTPTIFLLGAQDL--RVPVSNGLQ 725 (771)
Q Consensus 668 --~~~~-~~~~--------~~~~~~~~~~~~~~----~~-----~~~sp~~~~~~i~~P~Lii~G~~D~--~vp~~~~~~ 725 (771)
...+ .... ...+.. ....... .+ ...++...+.++++|+|+++|..|. .+++.....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~~~~~~~~~~~~~~ 226 (264)
T 3ibt_A 148 SFFDEWAETTDNADVLNHLRNEMPW-FHGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYSQPLSQDYRQLQLE 226 (264)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEECCSCCHHHHHHHHH
T ss_pred HHHHHhcccCCcHHHHHHHHHhhhh-ccchhHHHHHHHhccchhhccchhhcccccCCCeEEEEecCCccchhhHHHHHH
Confidence 0000 0000 000000 0000000 00 0112235567899999999864444 333444444
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 726 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.+. -...++++++++||... .+...++.+.|.+||+
T Consensus 227 ~~~~----~~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 227 FAAG----HSWFHPRHIPGRTHFPS-LENPVAVAQAIREFLQ 263 (264)
T ss_dssp HHHH----CTTEEEEECCCSSSCHH-HHCHHHHHHHHHHHTC
T ss_pred HHHh----CCCceEEEcCCCCCcch-hhCHHHHHHHHHHHHh
Confidence 4443 33589999999999765 3345577778888874
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=156.92 Aligned_cols=216 Identities=12% Similarity=0.067 Sum_probs=132.6
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 611 (771)
.+..|.||++||.+.. ...|...+..|+++ ||.|+++|+|| +|.+... ....++++.+.+..+.+..
T Consensus 33 ~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~g~~vi~~D~~G---~G~s~~~------~~~~~~~~~~~l~~~~~~~ 101 (302)
T 1pja_A 33 RASYKPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAKA 101 (302)
T ss_dssp --CCCCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEEECCCCCC--hhHHHHHHHHHHhcCCCcEEEEeccCC---Cccchhh------HHHHHHHHHHHHHHHhhcC
Confidence 3456789999997665 44688889999988 99999999999 4544311 1134667777777766653
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhCCC-ceeEEEecCCccchhhh----h--cCCCCCcchhhh-hccC----CCCCcC
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----V--GTTDIPDWCYVE-SYGS----KGKDSF 679 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~----~--~~~~~~~~~~~~-~~~~----~~~~~~ 679 (771)
.+++.|+||||||.+++.++.++|+ +++++|+.++....... . ............ .+.. .....+
T Consensus 102 ---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (302)
T 1pja_A 102 ---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNY 178 (302)
T ss_dssp ---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTGGGG
T ss_pred ---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHHHhhhhhc
Confidence 4789999999999999999999999 79999998875432100 0 000000000000 0000 000000
Q ss_pred CCCCC-hhhH-------HHHhhcC-------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHH----------------
Q 004149 680 TESPS-VEDL-------TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR---------------- 728 (771)
Q Consensus 680 ~~~~~-~~~~-------~~~~~~s-------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~---------------- 728 (771)
...+. .... ..+.... ....+.+++ |+|+++|++|.++|++.++.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (302)
T 1pja_A 179 WHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQLVY 257 (302)
T ss_dssp BCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSSSGGGGGTCEECTTCCEECGGGSHHH
T ss_pred ccChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccchhHhhHhhhcCCcccccchhhhhhh
Confidence 00111 0000 0000000 123467788 99999999999999988776632
Q ss_pred --------HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 729 --------ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 729 --------~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
.+... .++++++++++||..... ....+.+.+.+||
T Consensus 258 ~~~~~~~~~l~~~-~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl 301 (302)
T 1pja_A 258 LRDSFGLKTLLAR-GAIVRCPMAGISHTAWHS-NRTLYETCIEPWL 301 (302)
T ss_dssp HTTTTSHHHHHHT-TCEEEEECSSCCTTTTTS-CHHHHHHHTGGGC
T ss_pred hhhhhchhhHhhc-CCeEEEEecCcccccccc-CHHHHHHHHHHhc
Confidence 22222 248999999999986643 4556667776665
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-16 Score=157.75 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=125.7
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
.||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+... ....+++ .++.+.+. ++ +++
T Consensus 15 ~vvllHG~~~~--~~~w~~~~~~L~-~~~~vi~~Dl~G---~G~S~~~------~~~~~~~---~~~~l~~~--l~-~~~ 76 (258)
T 1m33_A 15 HLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPG---FGRSRGF------GALSLAD---MAEAVLQQ--AP-DKA 76 (258)
T ss_dssp EEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTT---STTCCSC------CCCCHHH---HHHHHHTT--SC-SSE
T ss_pred eEEEECCCCCC--hHHHHHHHHHhh-cCcEEEEeeCCC---CCCCCCC------CCcCHHH---HHHHHHHH--hC-CCe
Confidence 79999997654 446777777886 589999999999 5544321 1223344 34445443 34 789
Q ss_pred EEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcc---hhh-----------hhccC-CCCC------
Q 004149 619 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW---CYV-----------ESYGS-KGKD------ 677 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~---~~~-----------~~~~~-~~~~------ 677 (771)
.|+||||||.+++.+|.++|++++++|+.++................ .+. ..+.. ....
T Consensus 77 ~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 1m33_A 77 IWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQ 156 (258)
T ss_dssp EEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTHHH
T ss_pred EEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCccchh
Confidence 99999999999999999999999999998764211100000000000 000 00000 0000
Q ss_pred -------cC--CCCCChhhH----HHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 678 -------SF--TESPSVEDL----TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 678 -------~~--~~~~~~~~~----~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.+ ...+..... ..+...+....+.++++|+|+++|++|..+|++.++.+.+.+. ..+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~ 232 (258)
T 1m33_A 157 DARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFAK 232 (258)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCT----TCEEEEETT
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCCHHHHHHHHHhCc----cceEEEeCC
Confidence 00 000000000 0111222234567889999999999999999887666554432 468999999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHH
Q 004149 745 DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+||..... ...++.+.|.+|+++
T Consensus 233 ~gH~~~~e-~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 233 AAHAPFIS-HPAEFCHLLVALKQR 255 (258)
T ss_dssp CCSCHHHH-SHHHHHHHHHHHHTT
T ss_pred CCCCcccc-CHHHHHHHHHHHHHh
Confidence 99986543 356788889999864
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=158.20 Aligned_cols=207 Identities=14% Similarity=0.148 Sum_probs=125.2
Q ss_pred CCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECC----CCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004149 536 CDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNY----RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~V~~~d~----rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
..|+||++||.+.... ...|...+..| +.||.|+++|+ || +|.+.. ....+|+.+.++++.+.
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G---~G~S~~--------~~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIG---SGPQDH--------AHDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTT---SCSCCH--------HHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCC---CCCccc--------cCcHHHHHHHHHHHHHH
Confidence 4578999999654322 22345667777 78999999965 66 554321 12367888888888775
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHH--hCCCceeEEEecCCccchhhhhcCCCCCc--ch----hhhhc---c--CCC--
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIG--QAPDKFVAAAARNPLCNLALMVGTTDIPD--WC----YVESY---G--SKG-- 675 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~--~~p~~~~a~v~~~p~~~~~~~~~~~~~~~--~~----~~~~~---~--~~~-- 675 (771)
.+.+++.|+||||||.+++.++. .+|++++++|+.+|...... ..... +. ..... . ...
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPEN----PLFTPEGCAARKEHVEKLMAEGRGEDSLA 178 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTS----TTTSHHHHHHHHHHHHHHHHHTCTTCGGG
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchh----cccCHHHHHHHHHHHHHHhhccCcccccc
Confidence 35678999999999999999998 57999999999887643210 00000 00 00000 0 000
Q ss_pred CCcCCCCCC-hhhH---------HHH----h---hcCccccccCCCCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCCCE
Q 004149 676 KDSFTESPS-VEDL---------TRF----H---SKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVET 737 (771)
Q Consensus 676 ~~~~~~~~~-~~~~---------~~~----~---~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~-~~~~~~l~~~g~~~ 737 (771)
...+...+. .... ..+ . ..+....+.++++|+|+++|++|.++|++.. ..+.+.+.+.-...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp~~~~~~~~~~~l~~~~~~~ 258 (335)
T 2q0x_A 179 MLKHYDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKPSDEEVGTVLEGVRDHTGCN 258 (335)
T ss_dssp GTTTCSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCCCHHHHHHHHHHHHHHSSSS
T ss_pred chhhccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCChhhhHHHHHHHHHHhcCcc
Confidence 000000000 0000 000 0 0112235678999999999999999998642 23344444332223
Q ss_pred E--------E-----EEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 738 K--------V-----IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 738 ~--------~-----~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+ + .+++++|| +..+.+.+||++.
T Consensus 259 ~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~ 294 (335)
T 2q0x_A 259 RVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADE 294 (335)
T ss_dssp CEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhh
Confidence 3 5 78999999 3478899999764
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=152.42 Aligned_cols=210 Identities=16% Similarity=0.209 Sum_probs=123.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... ....++++.+.+..+++...++..
T Consensus 16 ~~~vvllHG~~~~--~~~w~~~~~~L~~~~~~vi~~Dl~G---hG~S~~~------~~~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPG---HGTNPER------HCDNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTT---CSSCC-------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCC--HHHHHHHHHHhcccCceEEEecCCC---CCCCCCC------CccCHHHHHHHHHHHHHHhCcCCC
Confidence 4889999997665 4578888888876899999999999 4444211 012345555555555554323323
Q ss_pred eEEEEEcChhHHHHHH---HHHhCCCceeEEEecCCccchhhhh----cCCCCCcch----------hhhhccCCCCCcC
Q 004149 617 KVTVVGGSHGGFLTTH---LIGQAPDKFVAAAARNPLCNLALMV----GTTDIPDWC----------YVESYGSKGKDSF 679 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~---~a~~~p~~~~a~v~~~p~~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~ 679 (771)
++.|+||||||.+++. ++.++|++++++|+.++........ .......|. ....+.. ...+
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 162 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQ--QAVF 162 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTT--SGGG
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHHHHhh--hhhh
Confidence 4999999999999999 8888999999999887643210000 000000000 0000000 0000
Q ss_pred CCCC--------------ChhhHHHHh-h------cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 680 TESP--------------SVEDLTRFH-S------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 680 ~~~~--------------~~~~~~~~~-~------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.... .......+. . ......+.++++|+|+++|++|..++ .+.+.+ . .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~---~--~~ 232 (264)
T 1r3d_A 163 SSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-----QLAESS---G--LS 232 (264)
T ss_dssp TTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-----HHHHHH---C--SE
T ss_pred hccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-----HHHHHh---C--Cc
Confidence 0000 000000011 0 11223456789999999999997542 233333 1 56
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 739 VIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++++||.... +...++.+.+.+|++++.
T Consensus 233 ~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 233 YSQVAQAGHNVHH-EQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp EEEETTCCSCHHH-HCHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCCCchhh-cCHHHHHHHHHHHHHHhc
Confidence 8899999998653 345688899999998764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-14 Score=166.18 Aligned_cols=265 Identities=9% Similarity=0.017 Sum_probs=171.0
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC----
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 121 (771)
.+++||||++|+|+.+... .....|+++++.++ +..+.+... .....++|| ||+.|+|++..+.
T Consensus 133 ~~~~SpDg~~lAy~~~~~G----~~~~~i~v~dl~tg--~~~~~~~~~-----~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAG----SDWREIHLMDVESK--QPLETPLKD-----VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp EEEECTTSSEEEEEEECSS----CCEEEEEEEETTTC--SEEEEEEEE-----EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred EEEECCCCCEEEEEEecCC----CceEEEEEEECCCC--CCCccccCC-----ceeccEEEe-CCCEEEEEEecCccccc
Confidence 3456899999999986532 34578888887443 333332121 113678999 9999999987642
Q ss_pred -----CCCeEEEEecC-Cc--ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCc
Q 004149 122 -----ESPIQFELWSQ-SQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDK 193 (771)
Q Consensus 122 -----~~~~~~~~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (771)
...+++....+ +. .+.+....... +.++.++.|||||++|++.+....
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~------~~~~~~~~~SpDg~~l~~~~~~~~------------------ 256 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ------HHRYVGATVTEDDRFLLISAANST------------------ 256 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGG------CCSEEEEEECTTSCEEEEEEESSS------------------
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCC------CeEEEEEEEcCCCCEEEEEEccCC------------------
Confidence 23456655522 22 23333322201 112357899999999999765321
Q ss_pred cCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 194 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 194 ~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
....||++|++++ +.+.+ +........+ |++||++ |+|.++...
T Consensus 257 ----------------------~~~~i~~~d~~~~~~~~~~l--~~~~~~~~~~-~~~~g~~----l~~~t~~~~----- 302 (693)
T 3iuj_A 257 ----------------------SGNRLYVKDLSQENAPLLTV--QGDLDADVSL-VDNKGST----LYLLTNRDA----- 302 (693)
T ss_dssp ----------------------SCCEEEEEETTSTTCCCEEE--ECSSSSCEEE-EEEETTE----EEEEECTTC-----
T ss_pred ----------------------CCcEEEEEECCCCCCceEEE--eCCCCceEEE-EeccCCE----EEEEECCCC-----
Confidence 2368999999877 56777 3333333333 8999999 999986543
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
.+.+|+.+|+ +++.. +.|+.+..... .|||+|++|++...++ | .
T Consensus 303 ------~~~~l~~~d~-----------------~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~----g----~ 349 (693)
T 3iuj_A 303 ------PNRRLVTVDA-----------------ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD----A----T 349 (693)
T ss_dssp ------TTCEEEEEET-----------------TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET----T----E
T ss_pred ------CCCEEEEEeC-----------------CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC----C----e
Confidence 2348999998 55443 56666554443 9999999999998875 2 4
Q ss_pred ccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEE
Q 004149 349 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLR 427 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~ 427 (771)
.+|++++++++..+.+..... ..+..+.+++|++.|++..+. .....||.+|+.+++.+.
T Consensus 350 ~~l~~~d~~g~~~~~l~~p~~-------------------~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~ 410 (693)
T 3iuj_A 350 ARVEQFDYEGKRVREVALPGL-------------------GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL 410 (693)
T ss_dssp EEEEEECTTSCEEEEECCSSS-------------------SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred eEEEEEECCCCeeEEeecCCC-------------------ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence 679999988654332211100 012345678899988887653 344679999999999888
Q ss_pred ecCCC
Q 004149 428 ITPAE 432 (771)
Q Consensus 428 l~~~~ 432 (771)
+....
T Consensus 411 l~~~~ 415 (693)
T 3iuj_A 411 YRASA 415 (693)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 87544
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-13 Score=142.03 Aligned_cols=267 Identities=12% Similarity=0.093 Sum_probs=161.5
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcc-eEEEecCCcccccc
Q 004149 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVPQTVHGSV 149 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~g~~ 149 (771)
..+.++++.. ++.......+ .... .++|||||+++++..... ..++.++ ..+.. .+.........
T Consensus 20 ~~v~~~d~~~--~~~~~~~~~~----~~~~-~~~~s~dg~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~--- 86 (331)
T 3u4y_A 20 RRISFFSTDT--LEILNQITLG----YDFV-DTAITSDCSNVVVTSDFC---QTLVQIETQLEPPKVVAIQEGQSSM--- 86 (331)
T ss_dssp TEEEEEETTT--CCEEEEEECC----CCEE-EEEECSSSCEEEEEESTT---CEEEEEECSSSSCEEEEEEECSSCC---
T ss_pred CeEEEEeCcc--cceeeeEEcc----CCcc-eEEEcCCCCEEEEEeCCC---CeEEEEECCCCceeEEecccCCCCc---
Confidence 4677766532 2333222222 1234 889999999887765532 3677777 45554 33333333321
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc
Q 004149 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 229 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~ 229 (771)
.+++|||||++|+ ++.... ....|++||+.+++
T Consensus 87 ------~~~~~s~dg~~l~-~~~~~~----------------------------------------~~~~i~v~d~~~~~ 119 (331)
T 3u4y_A 87 ------ADVDITPDDQFAV-TVTGLN----------------------------------------HPFNMQSYSFLKNK 119 (331)
T ss_dssp ------CCEEECTTSSEEE-ECCCSS----------------------------------------SSCEEEEEETTTTE
T ss_pred ------cceEECCCCCEEE-EecCCC----------------------------------------CcccEEEEECCCCC
Confidence 2389999999888 432210 12489999999988
Q ss_pred eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce-eEEEecccccchhhhhhhhcCCCCCCc
Q 004149 230 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 230 ~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
.... .+.......++|+|||+. |++..... .. |++++++ ..+.
T Consensus 120 ~~~~--~~~~~~~~~~~~spdg~~----l~~~~~~~--------------~~~i~~~~~~----------------~~g~ 163 (331)
T 3u4y_A 120 FIST--IPIPYDAVGIAISPNGNG----LILIDRSS--------------ANTVRRFKID----------------ADGV 163 (331)
T ss_dssp EEEE--EECCTTEEEEEECTTSSC----EEEEEETT--------------TTEEEEEEEC----------------TTCC
T ss_pred eEEE--EECCCCccceEECCCCCE----EEEEecCC--------------CceEEEEEEC----------------CCCc
Confidence 7665 344445678999999998 87765211 13 6666652 2222
Q ss_pred c----eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCc
Q 004149 309 V----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 384 (771)
Q Consensus 309 ~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 384 (771)
. ..............|||||++|++..... ..|+++|+.+++.... +..+.. .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~d~~~~~~~~~-------~~~~~~---~--- 220 (331)
T 3u4y_A 164 LFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG----------NSIGILETQNPENITL-------LNAVGT---N--- 220 (331)
T ss_dssp EEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT----------TEEEEEECSSTTSCEE-------EEEEEC---S---
T ss_pred EeecCCccccCCCCccceEECCCCCEEEEEeCCC----------CeEEEEECCCCcccce-------eeeccC---C---
Confidence 2 12222333467889999999887766442 4699999887664110 011100 0
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC---C----CC---CceeeEEeecCCEEEEEEeCC
Q 004149 385 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP---A----ES---NFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 385 g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~---~----~~---~~~~~~~s~d~~~l~~~~s~~ 454 (771)
..+..++|+|||++|+++.. +...|+.+|+.+++++.+.. . .. ......|++|++.|+++....
T Consensus 221 ----~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 221 ----NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp ----SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred ----CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 13457889999998877643 44568889999998754421 1 11 012258999999988776433
Q ss_pred CCCCeEEEEEec
Q 004149 455 VDVPQVKYGYFV 466 (771)
Q Consensus 455 ~~p~~l~~~~~~ 466 (771)
..+.+.++.
T Consensus 295 ---~~v~v~d~~ 303 (331)
T 3u4y_A 295 ---RELKVFTIS 303 (331)
T ss_dssp ---TEEEEEETT
T ss_pred ---CcEEEEEec
Confidence 346776654
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=152.99 Aligned_cols=235 Identities=13% Similarity=0.131 Sum_probs=131.6
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-----HHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
..+|.++++..+-+. ....|+||++||.+.... ..|.. .+..|++ +|.|+++|+||.+ .+.... +
T Consensus 17 ~~~~~~l~y~~~G~~----~~~~p~vvllHG~~~~~~-~~~~~~~~~~~~~~L~~-~~~vi~~D~~G~G---~s~~~~-~ 86 (286)
T 2qmq_A 17 ETPYGSVTFTVYGTP----KPKRPAIFTYHDVGLNYK-SCFQPLFRFGDMQEIIQ-NFVRVHVDAPGME---EGAPVF-P 86 (286)
T ss_dssp EETTEEEEEEEESCC----CTTCCEEEEECCTTCCHH-HHHHHHHTSHHHHHHHT-TSCEEEEECTTTS---TTCCCC-C
T ss_pred ccCCeEEEEEeccCC----CCCCCeEEEeCCCCCCch-hhhhhhhhhchhHHHhc-CCCEEEecCCCCC---CCCCCC-C
Confidence 345777776665432 124689999999776521 11332 5667765 6999999999943 321110 1
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh---------cCC
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------GTT 660 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---------~~~ 660 (771)
........+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|........ ...
T Consensus 87 ~~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
T 2qmq_A 87 LGYQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTS 164 (286)
T ss_dssp TTCCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHHHHHHHHHHHTTS
T ss_pred CCCCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchhhhhhhhhccccc
Confidence 111001344444444444333 234689999999999999999999999999999999855221100 000
Q ss_pred CCCcchhhhhccCC-------C----CCcCCCCCChhhHHHHh----hcCc----cccccCCCCcEEEEeeCCCCccCcH
Q 004149 661 DIPDWCYVESYGSK-------G----KDSFTESPSVEDLTRFH----SKSP----ISHISKVKTPTIFLLGAQDLRVPVS 721 (771)
Q Consensus 661 ~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~----~~sp----~~~~~~i~~P~Lii~G~~D~~vp~~ 721 (771)
..........+... . ...+...........+. .... ...+.++++|+|+++|++|..+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-~ 243 (286)
T 2qmq_A 165 SIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED-A 243 (286)
T ss_dssp CHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEEEEETTSTTHH-H
T ss_pred cchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEEEecCCCcccc-H
Confidence 00000000000000 0 00000000000001110 0011 13456889999999999999987 2
Q ss_pred HHHHHHHHHHhCCC-CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 722 NGLQYARALREKGV-ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 722 ~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
. .+.+.+... .+++++++++||.+.. +...++.+.+.+||+
T Consensus 244 ~----~~~~~~~~~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 244 V----VECNSKLDPTQTSFLKMADSGGQPQL-TQPGKLTEAFKYFLQ 285 (286)
T ss_dssp H----HHHHHHSCGGGEEEEEETTCTTCHHH-HCHHHHHHHHHHHHC
T ss_pred H----HHHHHHhcCCCceEEEeCCCCCcccc-cChHHHHHHHHHHhc
Confidence 2 333444433 5899999999998653 335577788888874
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=163.19 Aligned_cols=212 Identities=11% Similarity=0.033 Sum_probs=139.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcE----EEEECCCCCCCCChhhhhcCCCCc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS----LLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~----V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
.|..+.+++|.|+++. .+++|+|+++||+.+... ..+...++.|+++|+. |+++|+++.. ++.. ...
T Consensus 178 ~g~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~~~~--~r~~--~~~--- 248 (403)
T 3c8d_A 178 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAIDTT--HRAH--ELP--- 248 (403)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCCSHH--HHHH--HSS---
T ss_pred cCCcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCCCCc--cccc--cCC---
Confidence 4667889999998653 578999999999654221 2344567888888875 9999998621 1110 111
Q ss_pred cccchhhH--HHHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 593 GSQDVNDV--LTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 593 ~~~~~~D~--~~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
......+. .+++.++.++.. .|+++++|+|+||||++++.++.++|++|+++++.+|.+.+....
T Consensus 249 ~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~~----------- 317 (403)
T 3c8d_A 249 CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG----------- 317 (403)
T ss_dssp SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT-----------
T ss_pred ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCCC-----------
Confidence 01122332 245666666532 478899999999999999999999999999999999986432110
Q ss_pred hhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.. ........+.. . ......+|++|++|+.|..+ ..+++++++.|+++|+++++.++++ +|.
T Consensus 318 ----~~--------~~~~~~~~~~~-~---~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~~G-gH~ 379 (403)
T 3c8d_A 318 ----GQ--------QEGVLLEKLKA-G---EVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG-GHD 379 (403)
T ss_dssp ----SS--------SCCHHHHHHHT-T---SSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-CSC
T ss_pred ----CC--------cHHHHHHHHHh-c---cccCCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEeCC-CCC
Confidence 00 00011111111 1 12345688999999998654 5789999999999999999999999 697
Q ss_pred CCCCCChHHHHHHHHHHHHHH
Q 004149 749 IERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 749 ~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+. .....+..++.||.+.
T Consensus 380 ~~---~w~~~l~~~l~~l~~~ 397 (403)
T 3c8d_A 380 AL---CWRGGLMQGLIDLWQP 397 (403)
T ss_dssp HH---HHHHHHHHHHHHHHGG
T ss_pred HH---HHHHHHHHHHHHHhcc
Confidence 42 2234566777777654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.61 E-value=5e-14 Score=143.84 Aligned_cols=259 Identities=9% Similarity=0.063 Sum_probs=182.8
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC---------
Q 004149 51 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--------- 121 (771)
Q Consensus 51 ~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--------- 121 (771)
.+|..|.|+.... ...|+.++ .++...++|+.. ..--++|+|++|+|+....+
T Consensus 23 ~~g~~iy~~n~~d-------~~~ly~~~--~dg~~~~~l~~~---------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 23 ESDGEVFFSNTND-------NGRLYAMN--IDGSNIHKLSND---------TAMYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp EETTEEEEEEGGG-------TTEEEEEE--TTSCSCEEEEEE---------EEEEEEECSSEEEEEEECC------CCSS
T ss_pred EeCCEEEEEeCCC-------CceEEEEc--CCCCCCEEccCC---------ceeeEEEcCCEEEEEECCCCcccccceec
Confidence 3788999975421 24677754 566677777543 23456999999999987642
Q ss_pred -CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004149 122 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 122 -~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
....|+.+. ++++.++++.. .+..|+|+|++|+|.....
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~s~~g~~Iy~~~~~~------------------------- 125 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDPD--------------PCIYASLIGNYIYYLHYDT------------------------- 125 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEECS--------------CEEEEEEETTEEEEEEESS-------------------------
T ss_pred cCCCeEEEEeCCCCcceEeecC--------------CccEEEEeCCEEEEEeecC-------------------------
Confidence 145688888 55555555432 2457999999999975111
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
.....||++++++...++| +.... ..|+|+|+. |+|++. ..
T Consensus 126 ---------------~~~~~Iy~~~~dGs~~~~l--t~~~~----~~~~~~g~~----iy~t~~--------------g~ 166 (302)
T 3s25_A 126 ---------------QTATSLYRIRIDGEEKKKI--KNHYL----FTCNTSDRY----FYYNNP--------------KN 166 (302)
T ss_dssp ---------------SSCEEEEEEETTSCCCEEE--ESSCC----CCSEEETTE----EEEECT--------------TT
T ss_pred ---------------CCCceEEEEECCCCCeEEE--eCCCc----eEeeEECCE----EEEEeC--------------CC
Confidence 0347899999999888888 44332 346899999 999873 23
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.+||++++ +++..++|..... ..| ++|+|++|+|..... ..+|++++++++
T Consensus 167 ~~Iy~~~l-----------------~g~~~~~l~~~~~--~~~-~~P~g~~iy~t~~~~---------~~~I~~~~ldG~ 217 (302)
T 3s25_A 167 GQLYRYDT-----------------ASQSEALFYDCNC--YKP-VVLDDTNVYYMDVNR---------DNAIVHVNINNP 217 (302)
T ss_dssp CCEEEEET-----------------TTTEEEEEECSCE--EEE-EEEETTEEEEEEGGG---------TTEEEEECSSSC
T ss_pred ceEEEEEC-----------------CCCCEEEEeCCCc--cce-eeecCCEEEEEEcCC---------CcEEEEEECCCC
Confidence 38999998 7777777765322 345 459999999988653 268999999988
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeE
Q 004149 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSL 439 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~ 439 (771)
..+.++... .+.|+|+|++|+|..... ...|+++++++...++|.... ...
T Consensus 218 ~~~~Lt~~~------------------------~~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~~~----~~~ 268 (302)
T 3s25_A 218 NPVVLTEAN------------------------IEHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKELAKGE----FCN 268 (302)
T ss_dssp CCEECSCSC------------------------EEEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEEEESC----EEE
T ss_pred CeEEEeCCC------------------------cceEEECCCEEEEEECCC-CcEEEEEECCCCccEEeeCCc----cce
Confidence 776664332 134899999998876543 378999999888888887653 246
Q ss_pred EeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 440 LTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 440 ~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+++.+++|+++..... .|++.++.
T Consensus 269 i~i~~d~Iy~td~~~~---~i~~~~~d 292 (302)
T 3s25_A 269 INVTSQYVYFTDFVSN---KEYCTSTQ 292 (302)
T ss_dssp EEECSSEEEEEETTTC---CEEEEESS
T ss_pred EEEeCCEEEEEECCCC---eEEEEECC
Confidence 7889999999875333 38877643
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.3e-16 Score=160.14 Aligned_cols=215 Identities=13% Similarity=0.140 Sum_probs=128.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.......|...+..|+ .||.|+++|+||. |.+.. .......++++.+.+..+++.. +.+
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~---G~S~~----~~~~~~~~~~~~~~l~~~l~~~--~~~ 110 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPNS---GYSPV----SNQANVGLRDWVNAILMIFEHF--KFQ 110 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTTS---TTSCC----CCCTTCCHHHHHHHHHHHHHHS--CCS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCCC---CCCCC----CCcccccHHHHHHHHHHHHHHh--CCC
Confidence 389999997433322345667777775 6999999999994 44321 1112234667777666666653 446
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchh---hhhccC---------CCCCcCCCCCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY---VESYGS---------KGKDSFTESPS 684 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~ 684 (771)
++.|+|||+||.+++.++.++|++++++|+.+|.................. ...... ...........
T Consensus 111 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 3l80_A 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQ 190 (292)
T ss_dssp EEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHH
T ss_pred CeEEEEEchhHHHHHHHHHhCchheeeEEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHH
Confidence 899999999999999999999999999999996543222111110000000 000000 00000000000
Q ss_pred h--------hhHHHHhhcCc---------------cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 685 V--------EDLTRFHSKSP---------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 685 ~--------~~~~~~~~~sp---------------~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
. .....+....+ ...+.+ ++|+|+++|++|..++++ + .+.+.+. ..+ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~~~-~-~~~~~~~----~~~-~~ 262 (292)
T 3l80_A 191 FKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISE-KIPSIVFSESFREKEYLE-S-EYLNKHT----QTK-LI 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCCSSCCCCGGGGCCCCCT-TSCEEEEECGGGHHHHHT-S-TTCCCCT----TCE-EE
T ss_pred HHHhHHHHHHHHHHHHhhhhccccchhhhhcchhhhhccCC-CCCEEEEEccCccccchH-H-HHhccCC----Cce-ee
Confidence 0 00000111111 123445 899999999999999877 5 5443332 356 89
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++|.+.. +...++.+.|.+||+++-
T Consensus 263 ~~~~gH~~~~-e~p~~~~~~i~~fl~~~~ 290 (292)
T 3l80_A 263 LCGQHHYLHW-SETNSILEKVEQLLSNHE 290 (292)
T ss_dssp ECCSSSCHHH-HCHHHHHHHHHHHHHTCT
T ss_pred eCCCCCcchh-hCHHHHHHHHHHHHHhcc
Confidence 9999997653 345678899999998764
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=155.59 Aligned_cols=225 Identities=14% Similarity=0.165 Sum_probs=131.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++... +.++.|+||++||.+.+ ...|...+..|++. |.|+++|+|| +|.+... ......
T Consensus 29 ~g~~l~y~~~------G~g~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---hG~S~~~----~~~~~~ 92 (318)
T 2psd_A 29 LDSFINYYDS------EKHAENAVIFLHGNATS--SYLWRHVVPHIEPV-ARCIIPDLIG---MGKSGKS----GNGSYR 92 (318)
T ss_dssp TTEEEEEEEC------CSCTTSEEEEECCTTCC--GGGGTTTGGGTTTT-SEEEEECCTT---STTCCCC----TTSCCS
T ss_pred CCeEEEEEEc------CCCCCCeEEEECCCCCc--HHHHHHHHHHhhhc-CeEEEEeCCC---CCCCCCC----CCCccC
Confidence 4666654432 22334689999997755 34576677777654 7999999999 4444211 111234
Q ss_pred hhhHHHHHHHHHHcCCCCC-CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-hhhcCCCCCc-c--------
Q 004149 597 VNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIPD-W-------- 665 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~~~~~~~-~-------- 665 (771)
++++.+.+..+++. ++. +++.|+||||||.+++.+|.++|++++++|+.++..... .......... +
T Consensus 93 ~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (318)
T 2psd_A 93 LLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIALIKSEEG 170 (318)
T ss_dssp HHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTTSCSCHHHHHHHHSTHH
T ss_pred HHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhhhhhHHHHHHHHhcccc
Confidence 66666666666665 344 789999999999999999999999999999866432110 0000000000 0
Q ss_pred --------hhhhhccCCCCCcCCCCCChhhHHH-----------------HhhcC----------------ccccccCC-
Q 004149 666 --------CYVESYGSKGKDSFTESPSVEDLTR-----------------FHSKS----------------PISHISKV- 703 (771)
Q Consensus 666 --------~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~s----------------p~~~~~~i- 703 (771)
.+...+.... .......+.... +.... ....+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 247 (318)
T 2psd_A 171 EKMVLENNFFVETVLPSK---IMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASD 247 (318)
T ss_dssp HHHHTTTCHHHHTHHHHT---CSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHHHHHHHHHHHHTCT
T ss_pred hhhhhcchHHHHhhcccc---ccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHHHHHHHHHHhcccc
Confidence 0000000000 000000000000 00000 01124567
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
++|+|+++|++| .+++ .++.+.+.+ ...+++++ ++||... .+...++.+.|.+||++..
T Consensus 248 ~~P~Lvi~G~~D-~~~~-~~~~~~~~~----~~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~~ 306 (318)
T 2psd_A 248 DLPKLFIESDPG-FFSN-AIVEGAKKF----PNTEFVKV-KGLHFLQ-EDAPDEMGKYIKSFVERVL 306 (318)
T ss_dssp TSCEEEEEEEEC-SSHH-HHHHHHTTS----SSEEEEEE-EESSSGG-GTCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeccc-cCcH-HHHHHHHhC----CCcEEEEe-cCCCCCH-hhCHHHHHHHHHHHHHHhh
Confidence 999999999999 8876 555554443 24677788 7799765 4456788999999998653
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-17 Score=167.05 Aligned_cols=220 Identities=12% Similarity=0.190 Sum_probs=124.2
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|+ +||.|+++|+||. |.+..............+++.+.+..+++. ++.
T Consensus 24 ~~p~vv~lHG~~~~--~~~~~~~~~~l~-~g~~v~~~D~~G~---G~s~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~~ 95 (304)
T 3b12_A 24 SGPALLLLHGFPQN--LHMWARVAPLLA-NEYTVVCADLRGY---GGSSKPVGAPDHANYSFRAMASDQRELMRT--LGF 95 (304)
Confidence 35789999997765 346777778887 7999999999994 444321100001112233333333333332 234
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCC-----------------CCcch-------hhhh-
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD-----------------IPDWC-------YVES- 670 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~-----------------~~~~~-------~~~~- 670 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|............ ..... +...
T Consensus 96 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (304)
T 3b12_A 96 ERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYEGC 175 (304)
Confidence 6899999999999999999999999999999988654221100000 00000 0000
Q ss_pred cc-----------CCCCCcCCCCC-C----hhhHHHHhhc---C----ccccccCCCCcEEEEeeCCCCcc-CcHHHHHH
Q 004149 671 YG-----------SKGKDSFTESP-S----VEDLTRFHSK---S----PISHISKVKTPTIFLLGAQDLRV-PVSNGLQY 726 (771)
Q Consensus 671 ~~-----------~~~~~~~~~~~-~----~~~~~~~~~~---s----p~~~~~~i~~P~Lii~G~~D~~v-p~~~~~~~ 726 (771)
+. ......+.... . ......+... . ....+.++++|+|+++|++|..+ +......+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~ 255 (304)
T 3b12_A 176 LFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFSGSAGLMHSLFEMQVVW 255 (304)
Confidence 00 00000000000 0 0000000000 0 00116788999999999999655 44444444
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 727 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
.+.+. ++++.++ ++||.+.. +...++.+.|.+||++.
T Consensus 256 ~~~~~----~~~~~~i-~~gH~~~~-e~p~~~~~~i~~fl~~~ 292 (304)
T 3b12_A 256 APRLA----NMRFASL-PGGHFFVD-RFPDDTARILREFLSDA 292 (304)
Confidence 44333 3677778 99998764 34457888899999765
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-15 Score=150.62 Aligned_cols=212 Identities=17% Similarity=0.124 Sum_probs=129.0
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCC-----hhhhhcC---
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFG-----EEALQSL--- 588 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g-----~~~~~~~--- 588 (771)
+.++..++|.|+++.+.+++|+|+++||+.... .......+.+++ .+..|+.+++++...+. .++....
T Consensus 24 ~~~~~~~vylP~~y~~~~~yPvly~l~G~~~~~--~~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~~R~~d~~~~~~~~ 101 (278)
T 2gzs_A 24 TRHYRVWTAVPNTTAPASGYPILYMLDGNAVMD--RLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESR 101 (278)
T ss_dssp SCEEEEEEEEESSCCCTTCEEEEEESSHHHHHH--HCCHHHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTCCGGGGT
T ss_pred CceEEEEEECCCCCCCCCCCCEEEEeeChhHHH--HHHHHHHHHhccCCCeEEEEEcCCCCCcCcccccccccCCCCccc
Confidence 678999999999887778899887777743211 111223455554 68889989987532111 0110000
Q ss_pred -CC-C-----ccccchhhHHHH-----HHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh
Q 004149 589 -PG-K-----VGSQDVNDVLTA-----IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656 (771)
Q Consensus 589 -~~-~-----~~~~~~~D~~~~-----i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~ 656 (771)
+. . .......++... +.++.++..++++|++|+|+||||++++.++.+ |+.|+++++.+|...+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~~~~~s~~~~~~~~ 180 (278)
T 2gzs_A 102 KTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPSLGRGYD 180 (278)
T ss_dssp TCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGGGSTTHH
T ss_pred cccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCeEEEeCcchhcCcc
Confidence 00 0 000012222222 223344455788899999999999999999999 9999999999986432100
Q ss_pred hcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCcc--------CcHHHHHHHH
Q 004149 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV--------PVSNGLQYAR 728 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v--------p~~~~~~~~~ 728 (771)
.+. .......+ . ..-..|+++.+|+.|..+ +..+++++++
T Consensus 181 ---------~~~--------------------~~~~~~~~--~-~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~ 228 (278)
T 2gzs_A 181 ---------ALL--------------------SRVTAVEP--L-QFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLT 228 (278)
T ss_dssp ---------HHH--------------------HHHHTSCT--T-TTTTCEEEEEECCC-----------CHHHHHHHHHH
T ss_pred ---------hHH--------------------HHHHHhhc--c-CCCCCcEEEEecCccccccccchhhhhHHHHHHHHH
Confidence 000 00000000 0 112468999999999864 3688999999
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+|+++|+++++.++|+++|.... ...+...+.||.+
T Consensus 229 ~L~~~g~~~~~~~~~g~~H~~~~----~~~~~~~l~fl~~ 264 (278)
T 2gzs_A 229 ILKDKGVNAVFWDFPNLGHGPMF----NASFRQALLDISG 264 (278)
T ss_dssp HHHHTTCCEEEEECTTCCHHHHH----HHHHHHHHHHHTT
T ss_pred HHHcCCCeeEEEEcCCCCccchh----HHHHHHHHHHHhh
Confidence 99999999999999999997431 1223445556643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-13 Score=139.95 Aligned_cols=258 Identities=9% Similarity=-0.015 Sum_probs=148.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceE-EEeCCCCCeEEEEecCCCCCC
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA-VVPSPSGSKLLVVRNPENESP 124 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~-~~~SPdG~~la~~~~~~~~~~ 124 (771)
....++||+.+++.... ...++.+++.........++.. ..... ++|||||++|+ +....++..
T Consensus 44 ~~~~s~dg~~l~~~~~~--------~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~-~~~~~~~~~ 108 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDF--------CQTLVQIETQLEPPKVVAIQEG------QSSMADVDITPDDQFAV-TVTGLNHPF 108 (331)
T ss_dssp EEEECSSSCEEEEEEST--------TCEEEEEECSSSSCEEEEEEEC------SSCCCCEEECTTSSEEE-ECCCSSSSC
T ss_pred eEEEcCCCCEEEEEeCC--------CCeEEEEECCCCceeEEecccC------CCCccceEECCCCCEEE-EecCCCCcc
Confidence 44457899877665432 2478887764332102223222 22345 89999999997 544332222
Q ss_pred eEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004149 125 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
.++.++ ..++..+.+...... .++.|||||++|++.....
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~~~----------~~~~~spdg~~l~~~~~~~----------------------------- 149 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPYDA----------VGIAISPNGNGLILIDRSS----------------------------- 149 (331)
T ss_dssp EEEEEETTTTEEEEEEECCTTE----------EEEEECTTSSCEEEEEETT-----------------------------
T ss_pred cEEEEECCCCCeEEEEECCCCc----------cceEECCCCCEEEEEecCC-----------------------------
Confidence 566655 455554544443333 4899999999877654321
Q ss_pred ccCCcCcccCCccCce-EEEEEccCCc-e----eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeecc
Q 004149 204 WEEDWGETYAGKRQPS-LFVININSGE-V----QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~-l~v~d~~~~~-~----~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
.. |++|+++... + ... .+....+..++|+|||+. |+++..
T Consensus 150 --------------~~~i~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~spdg~~----l~v~~~-------------- 195 (331)
T 3u4y_A 150 --------------ANTVRRFKIDADGVLFDTGQEF--ISGGTRPFNITFTPDGNF----AFVANL-------------- 195 (331)
T ss_dssp --------------TTEEEEEEECTTCCEEEEEEEE--ECSSSSEEEEEECTTSSE----EEEEET--------------
T ss_pred --------------CceEEEEEECCCCcEeecCCcc--ccCCCCccceEECCCCCE----EEEEeC--------------
Confidence 23 6666665322 2 122 233345678899999997 766652
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004149 278 RPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
....|+++|+ .+++. ............++|||||++|++.... ...|+++
T Consensus 196 ~~~~v~v~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----------~~~i~~~ 248 (331)
T 3u4y_A 196 IGNSIGILET-----------------QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES----------TVDVFNF 248 (331)
T ss_dssp TTTEEEEEEC-----------------SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS----------EEEEEEE
T ss_pred CCCeEEEEEC-----------------CCCcccceeeeccCCCCCceEEECCCCCEEEEEEcC----------CCEEEEE
Confidence 2347899998 55553 2222234556789999999988765543 2458999
Q ss_pred ecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 355 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
|+.+++...+..- ...+. ... ........++|+|||++|+++....+ .+..+++.+..+..+..
T Consensus 249 d~~~~~~~~~~~~----~~~~~--~~~----~~~~~~~~~~~spdg~~l~v~~~~~~--~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 249 NQLSGTLSFVKSF----GHGLL--IDP----RPLFGANQMALNKTETKLFISANISR--ELKVFTISGKVVGYVAG 312 (331)
T ss_dssp ETTTTEEEEEEEE----ECCCC--CCC----GGGTTCCCEEECTTSSEEEEEETTTT--EEEEEETTSCEEEECTT
T ss_pred ECCCCceeeeccc----ccccc--cCC----CCcccccceEECCCCCEEEEecCCCC--cEEEEEecCCcccceec
Confidence 9887664222100 00000 000 00011235689999999887765444 45566787766665543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=144.39 Aligned_cols=261 Identities=11% Similarity=0.015 Sum_probs=155.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC-cccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++|||||+++++.... ...++.++ .+++....+.... ..++ ....++.|||||++|++.......
T Consensus 36 ~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~-- 105 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPEERV-----KSLFGAALSPDGKTLAIYESPVRL-- 105 (337)
T ss_dssp CCCEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTTEEE-----ECTTCEEECTTSSEEEEEEEEEEE--
T ss_pred ccceEEcCCCCEEEEEeCC---CCeEEEEECCCCCeEeeEEcCCccccc-----ccccceEECCCCCEEEEEeccccc--
Confidence 5678999999998776542 23566666 4555544444322 0000 012589999999998886422100
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.++|. ......|++||+.+++.... .+....+..++|+|||+. |
T Consensus 106 --------------------------~~~~~----~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 149 (337)
T 1pby_B 106 --------------------------ELTHF----EVQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSK----L 149 (337)
T ss_dssp --------------------------CSSCE----EECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSC----E
T ss_pred --------------------------ccccc----cccCceEEEEECCCCcEEEE--EeCCCCcceeEECCCCCE----E
Confidence 00000 00237899999998877655 333445678899999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++.. ..|+++|+ .+++...............|+|||+.|++.....
T Consensus 150 ~~~~-----------------~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 150 YGLG-----------------RDLHVMDP-----------------EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEES-----------------SSEEEEET-----------------TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred EEeC-----------------CeEEEEEC-----------------CCCcEeeeeeccccCCCceeCCCccEEeeeccCC
Confidence 7762 16899998 5565443322222223558999999876554332
Q ss_pred CCC----------CC---CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 339 SVD----------SG---AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 339 ~~~----------~g---~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
... .| +......|+++|+.+++...+.... ....+..++|+|||++|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI------------------MDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE------------------CSSCEEEEEECTTSSEEEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC------------------CCCceeeEEECCCCCEEEE
Confidence 100 00 0001125788888876542110000 0012235789999998876
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 406 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
. ...|+.+|+.+++...............|++||+.|++.. ....|.+.++.++
T Consensus 258 ~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~----~~~~i~v~d~~~~ 311 (337)
T 1pby_B 258 A-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG----ALGDLAAYDAETL 311 (337)
T ss_dssp E-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES----BSSEEEEEETTTC
T ss_pred e-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc----CCCcEEEEECcCC
Confidence 6 2578889999988765543333345678999999887752 2356888876554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-13 Score=143.99 Aligned_cols=266 Identities=11% Similarity=0.115 Sum_probs=148.2
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.+|||+ |+++... .....++++++..+ ..+++... .........++|||||++|++..... +.-.+|.
T Consensus 47 ~spdg~-l~~~~~~------~~~~~v~~~~~~~g--~~~~~~~~--~~~~~~p~~~a~spdg~~l~~~~~~~-~~v~v~~ 114 (347)
T 3hfq_A 47 LSAKDC-LYSVDKE------DDEGGIAAWQIDGQ--TAHKLNTV--VAPGTPPAYVAVDEARQLVYSANYHK-GTAEVMK 114 (347)
T ss_dssp ECTTCE-EEEEEEE------TTEEEEEEEEEETT--EEEEEEEE--EEESCCCSEEEEETTTTEEEEEETTT-TEEEEEE
T ss_pred EccCCe-EEEEEec------CCCceEEEEEecCC--cEEEeeee--ecCCCCCEEEEECCCCCEEEEEeCCC-CEEEEEE
Confidence 367998 5444321 12467888877432 33333321 01113466789999999997765432 3344555
Q ss_pred EecCCcceEEEecCCcccccc--cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004149 129 LWSQSQLEKEFHVPQTVHGSV--YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+..++....+........+.. ........++|||||+ |+.. ..
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~--------------------------------- 159 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DL--------------------------------- 159 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ET---------------------------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-eC---------------------------------
Confidence 544444444433321110000 0001124689999999 5443 22
Q ss_pred CcCcccCCccCceEEEEEcc-CCceeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004149 207 DWGETYAGKRQPSLFVININ-SGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~-~~~~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
....|++|++. +++...+. ..+....+..++|+|||+. |+++.. ....|+
T Consensus 160 ---------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~~--------------~~~~v~ 212 (347)
T 3hfq_A 160 ---------GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY----AFLAGE--------------LSSQIA 212 (347)
T ss_dssp ---------TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE----EEEEET--------------TTTEEE
T ss_pred ---------CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE----EEEEeC--------------CCCEEE
Confidence 22578899987 56554331 0222335667899999997 766542 222455
Q ss_pred EEecccccchhhhhhhhcCCCCCCcceec---CCC------CccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004149 284 AVRVSLYKSEASELELKESSSEDLPVVNL---TES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~l---t~~------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
+++++. .+++.+.+ ... ......++|||||++|+...... ..|.++
T Consensus 213 v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----------~~v~v~ 267 (347)
T 3hfq_A 213 SLKYDT---------------QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----------NTLAVF 267 (347)
T ss_dssp EEEEET---------------TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----------TEEEEE
T ss_pred EEEecC---------------CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----------CEEEEE
Confidence 555521 23433221 111 12366789999999887665432 357778
Q ss_pred ecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 355 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
++...+... .+..+.. .+ ..+..++|+|||++|+++....+...+|.+|.++|+++++.
T Consensus 268 ~~~~~g~~~-------~~~~~~~--~~-------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 268 AVTADGHLT-------LIQQIST--EG-------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EECGGGCEE-------EEEEEEC--SS-------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EECCCCcEE-------EeEEEec--CC-------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 775322110 1111110 01 12456789999998887766667888999999999988765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=136.60 Aligned_cols=265 Identities=11% Similarity=0.060 Sum_probs=165.3
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
++||+.|+... .+.+.+|++....... .+...........+...+|+|||+.|+.....+ .+.+
T Consensus 60 ~~~~~~l~~~~----------dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~ 123 (337)
T 1gxr_A 60 SNPTRHVYTGG----------KGCVKVWDISHPGNKS-PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLSI 123 (337)
T ss_dssp CSSSSEEEEEC----------BSEEEEEETTSTTCCS-CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEEE
T ss_pred ecCCcEEEEcC----------CCeEEEEECCCCCcee-eeecccccCCCCcEEEEEEcCCCCEEEEEcCCC-----cEEE
Confidence 56777777642 2467777775433211 111100011225688899999999998876543 3445
Q ss_pred e--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004149 130 W--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 130 ~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
| ..++.......... .+ .+..+.|+|||+.|+..+.
T Consensus 124 ~d~~~~~~~~~~~~~~~-~~------~i~~~~~~~~~~~l~~~~~----------------------------------- 161 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSS-AP------ACYALAISPDSKVCFSCCS----------------------------------- 161 (337)
T ss_dssp EECCCC--EEEEEEECS-SS------CEEEEEECTTSSEEEEEET-----------------------------------
T ss_pred EECCCCCcceeeecccC-CC------ceEEEEECCCCCEEEEEeC-----------------------------------
Confidence 5 23332222222111 11 1258999999998887643
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 208 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
...|++||+.+++..... ......+..+.|+|||+. |+..+ ....|+++|+
T Consensus 162 ---------dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~---------------~dg~i~~~d~ 212 (337)
T 1gxr_A 162 ---------DGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTK----LWTGG---------------LDNTVRSWDL 212 (337)
T ss_dssp ---------TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET
T ss_pred ---------CCcEEEEeCCCCceeeee-ecccCceEEEEECCCCCE----EEEEe---------------cCCcEEEEEC
Confidence 257899999888765441 234456888999999987 77665 3347889998
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004149 288 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+++..........+....|||||+.|+..+.+. .|+++|+.+++...+...
T Consensus 213 -----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-----------~i~~~~~~~~~~~~~~~~ 264 (337)
T 1gxr_A 213 -----------------REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS-----------NVEVLHVNKPDKYQLHLH 264 (337)
T ss_dssp -----------------TTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTSSCEEEECCC
T ss_pred -----------------CCCceEeeecCCCceEEEEECCCCCEEEEEcCCC-----------cEEEEECCCCCeEEEcCC
Confidence 5555444444556688899999999998777542 488899877553211100
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEE
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNI 447 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l 447 (771)
...+..+.|+||++.|+ +...++ .|..+++.+++..........+....|+++++.|
T Consensus 265 --------------------~~~v~~~~~~~~~~~l~-~~~~dg--~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 265 --------------------ESCVLSLKFAYCGKWFV-STGKDN--LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321 (337)
T ss_dssp --------------------SSCEEEEEECTTSSEEE-EEETTS--EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEE
T ss_pred --------------------ccceeEEEECCCCCEEE-EecCCC--cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEE
Confidence 11245678999999665 444444 4555688888776555444455667889999877
Q ss_pred EEEEe
Q 004149 448 IAVSS 452 (771)
Q Consensus 448 ~~~~s 452 (771)
+....
T Consensus 322 ~~~~~ 326 (337)
T 1gxr_A 322 VTGSG 326 (337)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 66553
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-13 Score=152.25 Aligned_cols=313 Identities=16% Similarity=0.119 Sum_probs=180.3
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+|||+.|+|... ..+.++++... .....++.. ...+...+|||||++||..+..+ ...+
T Consensus 27 spdg~~l~~~~~----------~~v~l~~~~~~-~~~~~~~~h-----~~~v~~~~~spdg~~lasg~~d~-----~v~l 85 (611)
T 1nr0_A 27 TPAGDKIQYCNG----------TSVYTVPVGSL-TDTEIYTEH-----SHQTTVAKTSPSGYYCASGDVHG-----NVRI 85 (611)
T ss_dssp CTTSSEEEEEET----------TEEEEEETTCS-SCCEEECCC-----SSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred CCCCCEEEeCCC----------CEEEEecCCCc-ccCeEecCC-----CCceEEEEECCCCcEEEEEeCCC-----CEEE
Confidence 789999998642 14555555322 122223222 25688899999999999876544 5667
Q ss_pred ec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC--CCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 130 WS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP--SKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
|+ .++......+. ...+. +..++|||||+.|+..+..... ....|+. .........+......+.|+
T Consensus 86 Wd~~~~~~~~~~~~~-~~~~~------v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~ 156 (611)
T 1nr0_A 86 WDTTQTTHILKTTIP-VFSGP------VKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFK 156 (611)
T ss_dssp EESSSTTCCEEEEEE-CSSSC------EEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEEC
T ss_pred eECCCCcceeeEeec-ccCCc------eEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEEC
Confidence 73 22222222211 11122 2699999999999987754321 1112221 11122233444555667788
Q ss_pred CCcCc-ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 206 EDWGE-TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~-~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
|+... .+++..+..|.+||..+++..... ......+..++|||||+. |+..+ .+..|.+
T Consensus 157 p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~----las~s---------------~D~~i~l 216 (611)
T 1nr0_A 157 PSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSL----FASTG---------------GDGTIVL 216 (611)
T ss_dssp SSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEE
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCE----EEEEE---------------CCCcEEE
Confidence 88653 566777889999998877654431 334456889999999997 77665 3346888
Q ss_pred EecccccchhhhhhhhcCCCCCCcc-eecC-------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 285 VRVSLYKSEASELELKESSSEDLPV-VNLT-------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt-------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+|+ .+++. ..+. .+...+...+|||||++|+..+.+. .|.+||+
T Consensus 217 wd~-----------------~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-----------~v~lWd~ 268 (611)
T 1nr0_A 217 YNG-----------------VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----------TIKIWNV 268 (611)
T ss_dssp EET-----------------TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----------EEEEEET
T ss_pred EEC-----------------CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-----------eEEEEeC
Confidence 887 44433 2332 4566788999999999998777653 4778887
Q ss_pred CCCCCCCCcc----------------------ceeeEEecccccCCC---CCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 357 PTNGNFSSLE----------------------KIVDVIPVVQCAEGD---CFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 357 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~---~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
.+++...... ..+..+.++...... .+.| +...+..++|+|||+.| ++...++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g-h~~~v~~l~~spdg~~l-~s~s~D~ 346 (611)
T 1nr0_A 269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG-HNKAITALSSSADGKTL-FSADAEG 346 (611)
T ss_dssp TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEE-EEEETTS
T ss_pred CCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC-CCCCEEEEEEeCCCCEE-EEEeCCC
Confidence 7654321100 000011111111000 0001 11234568899999966 4555566
Q ss_pred eeEEEEEECCCCcEEEecCC--CCCceeeEEeecC
Q 004149 412 SQVIISVNVSSGELLRITPA--ESNFSWSLLTLDG 444 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~d~ 444 (771)
...+ +|+.+++..++... ...+....+++++
T Consensus 347 ~v~~--Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 347 HINS--WDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp CEEE--EETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred cEEE--EECCCCceeeecccCCcceEEEEEECCCC
Confidence 5555 47888887665422 2233344556444
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-13 Score=140.01 Aligned_cols=269 Identities=13% Similarity=0.052 Sum_probs=150.1
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC--CCCeEEEEec-CCcceEEEecCCccccc
Q 004149 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--ESPIQFELWS-QSQLEKEFHVPQTVHGS 148 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 148 (771)
..++++.++...+...+++.. ........+|||||++|++....++ +.-.+|.+.. ++..+.+........
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~-- 100 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDA----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA-- 100 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEE----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS--
T ss_pred CCEEEEEEeCCCCCEEEeecc----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC--
Confidence 456666665555554444322 1244566899999999988776521 3334466663 355555544321110
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004149 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
....+++ ||++|+..... ...+.+|++...
T Consensus 101 -----~p~~~~~--dg~~l~~~~~~-------------------------------------------~~~v~~~~~~~~ 130 (361)
T 3scy_A 101 -----DPCYLTT--NGKNIVTANYS-------------------------------------------GGSITVFPIGQD 130 (361)
T ss_dssp -----CEEEEEE--CSSEEEEEETT-------------------------------------------TTEEEEEEBCTT
T ss_pred -----CcEEEEE--CCCEEEEEECC-------------------------------------------CCEEEEEEeCCC
Confidence 0024455 89877765321 256777877542
Q ss_pred -ceeecc---CCCC---------CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 229 -EVQAVK---GIPK---------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 229 -~~~~l~---~~~~---------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..+. .... ...+..++|||||+. |++... ....|++++++.
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~--------------~~~~v~v~~~~~------ 186 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY----LLADDL--------------GTDQIHKFNINP------ 186 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE----EEEEET--------------TTTEEEEEEECT------
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE----EEEEeC--------------CCCEEEEEEEcC------
Confidence 222220 0000 112356899999997 776642 122566666521
Q ss_pred hhhhhcCCCCCC----c-c-------eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 296 ELELKESSSEDL----P-V-------VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 296 ~~~~~~~~~~~~----~-~-------~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.++ + . ............++|||||++|++..... ..|.++++.++....
T Consensus 187 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 187 ---------NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG----------GTVIAFRYADGMLDE 247 (361)
T ss_dssp ---------TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------CEEEEEEEETTEEEE
T ss_pred ---------CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC----------CeEEEEEecCCceEE
Confidence 222 2 1 11122333467899999999887766432 358888877554311
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecC--CCCCceeeEE
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP--AESNFSWSLL 440 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~ 440 (771)
+ ..+.... ..+. ....++|||||++|+++... .+...+|.++..+|+++.+.. .........|
T Consensus 248 ~-------~~~~~~~--~~~~-----~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~ 313 (361)
T 3scy_A 248 I-------QTVAADT--VNAQ-----GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFII 313 (361)
T ss_dssp E-------EEEESCS--SCCC-----CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEE
T ss_pred e-------EEEecCC--CCCC-----CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEE
Confidence 1 0000000 0111 12367899999988776655 567788888877887665432 1223445789
Q ss_pred eecCCEEEEEEeC
Q 004149 441 TLDGDNIIAVSSS 453 (771)
Q Consensus 441 s~d~~~l~~~~s~ 453 (771)
+|||++|++....
T Consensus 314 spdg~~l~~~~~~ 326 (361)
T 3scy_A 314 TPNGKYLLVACRD 326 (361)
T ss_dssp CTTSCEEEEEETT
T ss_pred CCCCCEEEEEECC
Confidence 9999988877643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-13 Score=144.00 Aligned_cols=245 Identities=11% Similarity=0.104 Sum_probs=158.2
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
...++||+.|+++... .+.++++++.. ++..+..... ..+...+|||||++|++....+ ..+
T Consensus 37 ~~~s~dg~~l~~~~~~--------d~~i~v~d~~~--~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~~---~~v 98 (391)
T 1l0q_A 37 AVISPDGTKVYVANAH--------SNDVSIIDTAT--NNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS---STL 98 (391)
T ss_dssp EEECTTSSEEEEEEGG--------GTEEEEEETTT--TEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT---TEE
T ss_pred EEECCCCCEEEEECCC--------CCeEEEEECCC--CeEEEEEECC-----CCccceEECCCCCEEEEEECCC---CEE
Confidence 3457799887665422 24677777532 2333222222 3577899999999998765432 235
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
+.++ ..++....+...... .+++|+|||++|++...
T Consensus 99 ~v~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~--------------------------------- 135 (391)
T 1l0q_A 99 SVIDTTSNTVAGTVKTGKSP----------LGLALSPDGKKLYVTNN--------------------------------- 135 (391)
T ss_dssp EEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEET---------------------------------
T ss_pred EEEECCCCeEEEEEeCCCCc----------ceEEECCCCCEEEEEeC---------------------------------
Confidence 5444 444444444433332 58999999999877643
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004149 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
....|++||+.+++.... ......+..+.|+|||+. |++++. ....|+++
T Consensus 136 ----------~~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~~~~~--------------~~~~v~~~ 185 (391)
T 1l0q_A 136 ----------GDKTVSVINTVTKAVINT--VSVGRSPKGIAVTPDGTK----VYVANF--------------DSMSISVI 185 (391)
T ss_dssp ----------TTTEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSE----EEEEET--------------TTTEEEEE
T ss_pred ----------CCCEEEEEECCCCcEEEE--EecCCCcceEEECCCCCE----EEEEeC--------------CCCEEEEE
Confidence 236899999999887666 344445678999999997 766541 23479999
Q ss_pred ecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004149 286 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
|+ .+++...............|+|||++|+....+. ....|+++|+.+++....
T Consensus 186 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~--------~~~~v~~~d~~~~~~~~~- 239 (391)
T 1l0q_A 186 DT-----------------VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------YFNTVSMIDTGTNKITAR- 239 (391)
T ss_dssp ET-----------------TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS--------SCCEEEEEETTTTEEEEE-
T ss_pred EC-----------------CCCeEEEEEecCCCccceEECCCCCEEEEEecCc--------CCCcEEEEECCCCeEEEE-
Confidence 98 5665554444455677899999999988877521 135699999877543211
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+... ..+..++|+|||+.|+++...++ .+..+|+.++++....
T Consensus 240 ---------~~~~----------~~~~~~~~s~dg~~l~~s~~~d~--~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 240 ---------IPVG----------PDPAGIAVTPDGKKVYVALSFXN--TVSVIDTATNTITATM 282 (391)
T ss_dssp ---------EECC----------SSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEEEE
T ss_pred ---------EecC----------CCccEEEEccCCCEEEEEcCCCC--EEEEEECCCCcEEEEE
Confidence 1000 01235689999998877765454 4666788888766543
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=144.91 Aligned_cols=228 Identities=14% Similarity=0.149 Sum_probs=128.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++... +. +...|+||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+... .....
T Consensus 12 ~g~~l~y~~~-~~----G~~~p~vvllHG~~~~--~~~w~~~~~~L~-~~~rvia~DlrG---hG~S~~~-----~~~~~ 75 (276)
T 2wj6_A 12 FDNKLSYIDN-QR----DTDGPAILLLPGWCHD--HRVYKYLIQELD-ADFRVIVPNWRG---HGLSPSE-----VPDFG 75 (276)
T ss_dssp TTEEEEEEEC-CC----CCSSCEEEEECCTTCC--GGGGHHHHHHHT-TTSCEEEECCTT---CSSSCCC-----CCCCC
T ss_pred CCeEEEEEEe-cC----CCCCCeEEEECCCCCc--HHHHHHHHHHHh-cCCEEEEeCCCC---CCCCCCC-----CCCCC
Confidence 4666655433 11 1234789999997655 457888888886 479999999999 5554321 11223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccch-----hh-hhcCCCCCcch---
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNL-----AL-MVGTTDIPDWC--- 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~-----~~-~~~~~~~~~~~--- 666 (771)
++++.+.+..+++. .+.+++.|+||||||.+++.+|.++ |++++++|+.++.... .. .........|.
T Consensus 76 ~~~~a~dl~~ll~~--l~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T 2wj6_A 76 YQEQVKDALEILDQ--LGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGT 153 (276)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCcchHHHHH
Confidence 44444444444443 2346899999999999999999999 9999999998764210 00 00000000110
Q ss_pred --hhhhccCCC---------CCcCCCCCChhhH----H----HHh-hcCccccccCCCCcEEEEeeCCCCccC--cHHHH
Q 004149 667 --YVESYGSKG---------KDSFTESPSVEDL----T----RFH-SKSPISHISKVKTPTIFLLGAQDLRVP--VSNGL 724 (771)
Q Consensus 667 --~~~~~~~~~---------~~~~~~~~~~~~~----~----~~~-~~sp~~~~~~i~~P~Lii~G~~D~~vp--~~~~~ 724 (771)
+...+.... ...... ...... . .+. ..++...+.++++|+|+++|..|...+ .....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~~~~~~~ 232 (276)
T 2wj6_A 154 HGLFDVWLDGHDEKRVRHHLLEEMAD-YGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINS 232 (276)
T ss_dssp HHHHHHHHTTBCCHHHHHHHHTTTTT-CCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhhh-cchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchhHHHHHH
Confidence 000000000 000000 000000 0 000 012234567889999998874443322 12223
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
.+.+. -...++++++++||.... +...++.+.+.+||++
T Consensus 233 ~~~~~----~p~a~~~~i~~~gH~~~~-e~P~~~~~~i~~Fl~~ 271 (276)
T 2wj6_A 233 DFAEQ----HPWFSYAKLGGPTHFPAI-DVPDRAAVHIREFATA 271 (276)
T ss_dssp HHHHH----CTTEEEEECCCSSSCHHH-HSHHHHHHHHHHHHHH
T ss_pred HHHhh----CCCeEEEEeCCCCCcccc-cCHHHHHHHHHHHHhh
Confidence 33332 335899999999997653 3456888899999975
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-12 Score=135.56 Aligned_cols=249 Identities=12% Similarity=0.104 Sum_probs=157.5
Q ss_pred cceEEEeCCCCCeEEEEecCCC---CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
....++|||||++|++...... ....++.++ .+++..+.+...... ..+.|||||++|++....
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~-- 109 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP----------FGATINNTTQTLWFGNTV-- 109 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC----------CSEEEETTTTEEEEEETT--
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc----------ceEEECCCCCEEEEEecC--
Confidence 3567899999999966654321 134566666 555555555544333 489999999987775332
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC--------ccceEEE
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL--------SVGQVVW 247 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~--------~~~~~~w 247 (771)
...|+++|+.+++........... .+..++|
T Consensus 110 -----------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (353)
T 3vgz_A 110 -----------------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA 148 (353)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE
T ss_pred -----------------------------------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE
Confidence 258999999988864431121111 2567899
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecC
Q 004149 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSP 326 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~Sp 326 (771)
+|||+. |++..+. ....|+++|+ .+++...... .........|||
T Consensus 149 s~dg~~----l~~~~~~-------------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 149 DDATNT----VYISGIG-------------KESVIWVVDG-----------------GNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp ETTTTE----EEEEEES-------------SSCEEEEEET-----------------TTTEEEEEECCCCTTCCCCEEET
T ss_pred CCCCCE----EEEEecC-------------CCceEEEEcC-----------------CCCceEEEecCCCCccceEEECC
Confidence 999997 7666521 2347999998 6665544333 344477899999
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEE
Q 004149 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~ 406 (771)
||++|++.... ..|+++|+.+++.... +........ .....++|+|||+.|+++
T Consensus 195 dg~~l~~~~~~-----------~~i~~~d~~~~~~~~~----------~~~~~~~~~-----~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 195 EGKRLYTTNAD-----------GELITIDTADNKILSR----------KKLLDDGKE-----HFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTTEEEEECTT-----------SEEEEEETTTTEEEEE----------EECCCSSSC-----CCEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCeEEEE----------EEcCCCCCC-----cccceEEECCCCCEEEEE
Confidence 99998776542 3588999877653211 111000000 012346899999988766
Q ss_pred eeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
.. ....|+.+|+.+++......... .....++++++.+++..... ..|++.+..+
T Consensus 249 ~~--~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~ 303 (353)
T 3vgz_A 249 DS--KAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQA---GKVSVIDAKS 303 (353)
T ss_dssp ES--SSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTT---TEEEEEETTT
T ss_pred eC--CCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCC---CeEEEEECCC
Confidence 53 33568888998888665443322 23478999999887766432 4677777543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=149.00 Aligned_cols=290 Identities=9% Similarity=-0.019 Sum_probs=174.7
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC--cccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
...++||| ++.+++....+ ..+..++ ..++..+.+.... ... +...++.|+|||+.++....+....
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~---~~i~~~d~~~g~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLED---EGMDVLDINSGQTVRLSPPEKYKKKL------GFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTS---SSEEEEETTTCCEEEECCCHHHHTTC------CEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred ceEEEEeC-CCeEEEEeCCC---CeEEEEECCCCeEeeecCcccccccC------CceeEEEEcCCCEEEEEECCCCEEE
Confidence 45789999 55666654432 2344444 4444443332211 111 1235789999998766655443221
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCc-cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~-~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.|+............+........|+++....++.. ....|++||+.+++.... ......+..++|+|||+.
T Consensus 195 --~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~--- 267 (433)
T 3bws_A 195 --VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK--TDKIGLPRGLLLSKDGKE--- 267 (433)
T ss_dssp --EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--CCCCSEEEEEEECTTSSE---
T ss_pred --EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE--ecCCCCceEEEEcCCCCE---
Confidence 232211111111112223334566788755554333 567999999999887666 455556788999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|++.+...... ...+..|+++|+ .+++.............+.|+|||+.|++...
T Consensus 268 -l~~~~~~~~~~-------~~~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 268 -LYIAQFSASNQ-------ESGGGRLGIYSM-----------------DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp -EEEEEEESCTT-------CSCCEEEEEEET-----------------TTTEEEEEEEEEECEEEEEECSSTTEEEEEET
T ss_pred -EEEEECCCCcc-------ccCCCeEEEEEC-----------------CCCcEEeeccCCCCcceEEECCCCCEEEEEec
Confidence 77776422110 012347999998 55655444444446778999999998877764
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe----
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---- 412 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~---- 412 (771)
.+ ..|++||+.+++.... +.. ...+..++|+|||+.|++.....+.
T Consensus 323 ~~----------~~v~v~d~~~~~~~~~----------~~~----------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 323 CC----------SKIEVYDLKEKKVQKS----------IPV----------FDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp TT----------TEEEEEETTTTEEEEE----------EEC----------SSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred CC----------CEEEEEECCCCcEEEE----------ecC----------CCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 43 4689999886543211 100 0123467899999988777654432
Q ss_pred --------eEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 413 --------QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 413 --------~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
..|+.+|+.+++...............|+++|+.|++..... ..+++.++
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d---~~i~v~~~ 430 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD---HQIRVYRR 430 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTT---TEEEEEEE
T ss_pred cccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCC---CeEEEEEe
Confidence 379999999998776655544456678999999887665422 34555554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-13 Score=152.97 Aligned_cols=184 Identities=9% Similarity=0.009 Sum_probs=109.6
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||++|+-. ...+.+.+|++...... ...+... ..+.+...+|||||++||...... +......+
T Consensus 68 spdg~~lasg---------~~d~~v~lWd~~~~~~~-~~~~~~~---~~~~v~~v~fs~dg~~l~~~~~~~-~~~~~v~~ 133 (611)
T 1nr0_A 68 SPSGYYCASG---------DVHGNVRIWDTTQTTHI-LKTTIPV---FSGPVKDISWDSESKRIAAVGEGR-ERFGHVFL 133 (611)
T ss_dssp CTTSSEEEEE---------ETTSEEEEEESSSTTCC-EEEEEEC---SSSCEEEEEECTTSCEEEEEECCS-SCSEEEEE
T ss_pred CCCCcEEEEE---------eCCCCEEEeECCCCcce-eeEeecc---cCCceEEEEECCCCCEEEEEECCC-CceeEEEE
Confidence 5666666543 33457777776433221 1111111 125688999999999999876543 22234555
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCe-EEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004149 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
|+.+.....+. +..+ .+..++|+||++. |+..+.+...+ .|+............+..+...+.|++|.
T Consensus 134 wd~~~~~~~l~---gh~~------~v~~v~f~p~~~~~l~s~s~D~~v~--lwd~~~~~~~~~l~~H~~~V~~v~fspdg 202 (611)
T 1nr0_A 134 FDTGTSNGNLT---GQAR------AMNSVDFKPSRPFRIISGSDDNTVA--IFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202 (611)
T ss_dssp TTTCCBCBCCC---CCSS------CEEEEEECSSSSCEEEEEETTSCEE--EEETTTBEEEEEECCCSSCEEEEEECTTS
T ss_pred eeCCCCcceec---CCCC------CceEEEECCCCCeEEEEEeCCCeEE--EEECCCCeEeeeeccccCceEEEEECCCC
Confidence 65443322111 1111 2368999999984 77766665432 33322111112233455566678899996
Q ss_pred CcccCCccCceEEEEEccCCceeeccCC------CCCCccceEEEecCCCCCccEEEEEe
Q 004149 209 GETYAGKRQPSLFVININSGEVQAVKGI------PKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~------~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
...+++..+..|.+||+.+++....... .....+..++|+|||+. |+..+
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~----l~s~s 258 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK----IASAS 258 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE----EEEEE
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE----EEEEe
Confidence 6666777789999999988876544100 23446788999999997 77666
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-12 Score=137.16 Aligned_cols=231 Identities=11% Similarity=0.043 Sum_probs=146.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.+...+||||++ |+..+.. + .+.+| ..++....... ..+..+. +.+++|||||++|+..+.+
T Consensus 84 ~v~~~~~s~d~~-l~~~s~d--g---~v~lWd~~~~~~~~~~~~~~~~H~~~------V~~v~~spdg~~l~sgs~d--- 148 (344)
T 4gqb_B 84 GVADLTWVGERG-ILVASDS--G---AVELWELDENETLIVSKFCKYEHDDI------VSTVSVLSSGTQAVSGSKD--- 148 (344)
T ss_dssp CEEEEEEETTTE-EEEEETT--S---EEEEEEECTTSSCEEEEEEEECCSSC------EEEEEECTTSSEEEEEETT---
T ss_pred CEEEEEEeCCCe-EEEEECC--C---EEEEEeccCCCceeEeeccccCCCCC------EEEEEECCCCCEEEEEeCC---
Confidence 478899999974 5554443 2 44555 23333222221 1111122 3689999999999886433
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|.+||+.+++..... ......+..+.|+||++.
T Consensus 149 -----------------------------------------~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~--- 183 (344)
T 4gqb_B 149 -----------------------------------------ICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDS--- 183 (344)
T ss_dssp -----------------------------------------SCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTT---
T ss_pred -----------------------------------------CeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCC---
Confidence 57899999998865541 334557888999999988
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC--CCccccceeecCCCCEEEE
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE--SISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~--~~~~~~~p~~SpDG~~l~f 333 (771)
++.++. .+..|.++|+ .+++. ..+.. ....+.+..|+|++..++.
T Consensus 184 -~l~s~s--------------~D~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 184 -VFLSCS--------------EDNRILLWDT-----------------RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp -EEEEEE--------------TTSCEEEEET-----------------TSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred -ceeeec--------------cccccccccc-----------------cccceeeeeecceeeccceeeeecCCCCcceE
Confidence 766552 2336888888 55543 33432 2334678999997665443
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
....+ ..|.+||+.+++....... +...+..++|+|||..++++.+.++..
T Consensus 232 sg~~d----------g~v~~wd~~~~~~~~~~~~-------------------h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 232 FGDEN----------GTVSLVDTKSTSCVLSSAV-------------------HSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp EEETT----------SEEEEEESCC--CCEEEEC-------------------CSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred EeccC----------CcEEEEECCCCcEEEEEcC-------------------CCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 33222 3588999887664321111 111345678999998777777777766
Q ss_pred EEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC
Q 004149 414 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~ 453 (771)
.|| |+.++++.++......+....|+|+++.++++.+.
T Consensus 283 ~vw--d~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 283 AVL--DSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp EEE--CTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred EEE--ECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence 665 88889888776555556667899999887766653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=135.16 Aligned_cols=256 Identities=9% Similarity=-0.001 Sum_probs=147.2
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|++.... ...+.+++++...+....+...... ......+|||||++|++....+ +.-.+|.
T Consensus 45 ~spdg~~l~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~-~~i~~~d 112 (343)
T 1ri6_A 45 VSPDKRYLYVGVRP--------EFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDHQGQFVFVGSYNA-GNVSVTR 112 (343)
T ss_dssp ECTTSSEEEEEETT--------TTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECTTSSEEEEEETTT-TEEEEEE
T ss_pred ECCCCCEEEEeecC--------CCeEEEEEecCCCCceeeccccccC---CCCcEEEEcCCCCEEEEEecCC-CeEEEEE
Confidence 36789887775432 1356666665333333333221111 2467789999999987765432 3233333
Q ss_pred EecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004149 129 LWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
+. .+........ .... ....++|||||++|+....
T Consensus 113 ~~-~~~~~~~~~~~~~~~--------~~~~~~~s~dg~~l~~~~~----------------------------------- 148 (343)
T 1ri6_A 113 LE-DGLPVGVVDVVEGLD--------GCHSANISPDNRTLWVPAL----------------------------------- 148 (343)
T ss_dssp EE-TTEEEEEEEEECCCT--------TBCCCEECTTSSEEEEEEG-----------------------------------
T ss_pred CC-CCccccccccccCCC--------CceEEEECCCCCEEEEecC-----------------------------------
Confidence 32 3322222221 1110 1258899999998876532
Q ss_pred cCcccCCccCceEEEEEccC-Cceeecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCcee
Q 004149 208 WGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~-~~~~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
....|++||+.+ ++...+. ..+....+..++|+|||+. |+++.. ....|
T Consensus 149 --------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~----l~~~~~--------------~~~~i 202 (343)
T 1ri6_A 149 --------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY----AYCVNE--------------LNSSV 202 (343)
T ss_dssp --------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE----EEEEET--------------TTTEE
T ss_pred --------CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE----EEEEeC--------------CCCEE
Confidence 225789999987 6654220 0223345667899999997 766641 22367
Q ss_pred EEEecccccchhhhhhhhcCCCCCCccee------cCCC---CccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004149 283 YAVRVSLYKSEASELELKESSSEDLPVVN------LTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------lt~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
.+++++. .+++.+. +... ......+.|||||++|++....+ ..|.+
T Consensus 203 ~~~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~----------~~i~v 257 (343)
T 1ri6_A 203 DVWELKD---------------PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA----------SLITV 257 (343)
T ss_dssp EEEESSC---------------TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT----------TEEEE
T ss_pred EEEEecC---------------CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC----------CEEEE
Confidence 7777621 2232211 1111 12344689999999886655332 45888
Q ss_pred eecCC--CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 354 IDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 354 ~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+++.. +..+.+ ..+.. . ..+..++|+|||+.|++....++...+|.+|..+|+++.+.
T Consensus 258 ~d~~~~~~~~~~~--------~~~~~--~--------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 258 FSVSEDGSVLSKE--------GFQPT--E--------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EEECTTSCCEEEE--------EEEEC--S--------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCceEEe--------eeecC--C--------CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 88763 221111 11100 0 12457889999998887766678888999999998877654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=155.92 Aligned_cols=263 Identities=17% Similarity=0.149 Sum_probs=167.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||+.|+.....+ .+.+| ..+........ ... ..+++|||||+.|+....+...
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~-----~i~~w~~~~~~~~~~~~~~~~----------v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQHLQTLTGHSSS----------VWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECCCSSC----------EEEEEECTTSSEEEEEETTSEE
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEeCCCCC----------EEEEEECCCCCEEEEEeCCCEE
Confidence 4577889999999998876543 45666 33332222221 112 2588999999999988765432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+ .|+. ..........+........|++|....+++.....|.+||..+.....+ ......+..++|+||++.
T Consensus 369 ~--~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~~~--- 440 (577)
T 2ymu_A 369 K--LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDDQT--- 440 (577)
T ss_dssp E--EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE--ECCSSCEEEEEECTTSSE---
T ss_pred E--EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe--cCCCCCeEEEEECCCCCE---
Confidence 2 2221 1111111122333334567888865566666778999999876666666 344556788999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ .+..|.++|+ .+.....+..+...+....|||||+.|+..+.
T Consensus 441 -l~~~~---------------~d~~v~~w~~-----------------~~~~~~~~~~~~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 441 -IASAS---------------DDKTVKLWNR-----------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp -EEEEE---------------TTSEEEEEET-----------------TSCEEEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred -EEEEc---------------CCCEEEEEEC-----------------CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 77665 2336778886 55566777777778899999999999987765
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+. .|.+||..+ +..+ .+.. +...+..++|||||+.| ++...++...||
T Consensus 488 d~-----------~i~iw~~~~-~~~~----------~~~~---------h~~~v~~l~~s~dg~~l-~s~~~dg~v~lw 535 (577)
T 2ymu_A 488 DK-----------TVKLWNRNG-QLLQ----------TLTG---------HSSSVRGVAFSPDGQTI-ASASDDKTVKLW 535 (577)
T ss_dssp TS-----------EEEEEETTS-CEEE----------EEEC---------CSSCEEEEEECTTSSCE-EEEETTSEEEEE
T ss_pred CC-----------EEEEEcCCC-CEEE----------EEeC---------CCCCEEEEEEcCCCCEE-EEEECcCEEEEE
Confidence 42 478888543 2111 0000 11234567899999966 455556655555
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
|..+..+..+......+....|++|++.|+...
T Consensus 536 --d~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 536 --NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp --CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred --eCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 664444555555445566678999999877544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-12 Score=133.42 Aligned_cols=244 Identities=15% Similarity=0.130 Sum_probs=140.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
......+|||||++|++..... +.-.+|.+. .++..+.+...... + ....++|||||++|++....
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~s~dg~~l~~~~~~---- 104 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESALP--G------SLTHISTDHQGQFVFVGSYN---- 104 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEECS--S------CCSEEEECTTSSEEEEEETT----
T ss_pred CCCceEEECCCCCEEEEeecCC-CeEEEEEecCCCCceeeccccccC--C------CCcEEEEcCCCCEEEEEecC----
Confidence 3466789999999998776542 333344444 24444444333211 0 11589999999988776432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC---ceeeccCCCCCCccceEEEecCCCCC
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG---EVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~---~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
...|++||+..+ +.... ......+..++|+|||+.
T Consensus 105 ---------------------------------------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~- 142 (343)
T 1ri6_A 105 ---------------------------------------AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRT- 142 (343)
T ss_dssp ---------------------------------------TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSE-
T ss_pred ---------------------------------------CCeEEEEECCCCcccccccc--ccCCCCceEEEECCCCCE-
Confidence 256888888433 33333 233345778899999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-Cccee-----cCC-CCccccceeecCC
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVN-----LTE-SISSAFFPRFSPD 327 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~-----lt~-~~~~~~~p~~SpD 327 (771)
|++... ....|+++|+ .+ ++... +.. .........|+||
T Consensus 143 ---l~~~~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 143 ---LWVPAL--------------KQDRICLFTV-----------------SDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp ---EEEEEG--------------GGTEEEEEEE-----------------CTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred ---EEEecC--------------CCCEEEEEEe-----------------cCCCceeeecccccccCCCCCcceEEECCC
Confidence 765541 2236888887 33 44332 221 2234567889999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCC--CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
|++|++..... ..|.++++.. +....+ ....... ..+.+ ......++|+|||+.|++
T Consensus 189 g~~l~~~~~~~----------~~i~~~~~~~~~g~~~~~-----~~~~~~~----~~~~~--~~~~~~i~~s~dg~~l~v 247 (343)
T 1ri6_A 189 EQYAYCVNELN----------SSVDVWELKDPHGNIECV-----QTLDMMP----ENFSD--TRWAADIHITPDGRHLYA 247 (343)
T ss_dssp SSEEEEEETTT----------TEEEEEESSCTTSCCEEE-----EEEECSC----TTCCS--CCCEEEEEECTTSSEEEE
T ss_pred CCEEEEEeCCC----------CEEEEEEecCCCCcEEEE-----eeccccC----ccccc--cCCccceEECCCCCEEEE
Confidence 99887776432 3578888753 322110 0011000 00100 001225789999998877
Q ss_pred EeeeCCeeEEEEEECCCCcEEEec--CCCCCceeeEEeecCCEEEEEEe
Q 004149 406 SSIWGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~--~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
+...++...+|.++..+++.+.+. ..........|+++|+.|++...
T Consensus 248 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 248 CDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp EETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred EecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence 665556656665554466555442 12222455789999998876653
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-15 Score=150.41 Aligned_cols=213 Identities=11% Similarity=0.028 Sum_probs=117.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||.+.. ...|...+..|++ ||.|+++|+|| +|.+... .....++++.+.+..+++.. ...
T Consensus 50 ~~~~lvllHG~~~~--~~~~~~l~~~L~~-~~~v~~~D~~G---~G~S~~~-----~~~~~~~~~a~~~~~~l~~~-~~~ 117 (280)
T 3qmv_A 50 APLRLVCFPYAGGT--VSAFRGWQERLGD-EVAVVPVQLPG---RGLRLRE-----RPYDTMEPLAEAVADALEEH-RLT 117 (280)
T ss_dssp CSEEEEEECCTTCC--GGGGTTHHHHHCT-TEEEEECCCTT---SGGGTTS-----CCCCSHHHHHHHHHHHHHHT-TCS
T ss_pred CCceEEEECCCCCC--hHHHHHHHHhcCC-CceEEEEeCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHHh-CCC
Confidence 34889999997655 4467778888876 99999999999 5554321 11223444444444443331 135
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCcee----EEEecCCccchhhhhc-CCCCCcchh---hhhccCCCCC-----cCCCC
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFV----AAAARNPLCNLALMVG-TTDIPDWCY---VESYGSKGKD-----SFTES 682 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~----a~v~~~p~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~-----~~~~~ 682 (771)
+++.|+||||||.+++.+|.++|+++. .+++.+.......... ........+ ...++..... .+...
T Consensus 118 ~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (280)
T 3qmv_A 118 HDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDR 197 (280)
T ss_dssp SSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCT
T ss_pred CCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHH
Confidence 789999999999999999998887655 5555443221100000 000000000 0000000000 00000
Q ss_pred CC---hhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC-CCChHHH
Q 004149 683 PS---VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-PQSDFES 758 (771)
Q Consensus 683 ~~---~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~-~~~~~~~ 758 (771)
.. ...........+ ..+.++++|+|+++|++|..++++.+..+.+.+. ..++++++++ ||.... .+...++
T Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~g-gH~~~~~~~~~~~~ 272 (280)
T 3qmv_A 198 RLPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTT---GSFLRRHLPG-NHFFLNGGPSRDRL 272 (280)
T ss_dssp THHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSCHHHHHTTGGGBS---SCEEEEEEEE-ETTGGGSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcChHHHHHHHHhcC---CceEEEEecC-CCeEEcCchhHHHH
Confidence 00 000111111111 1246789999999999999999887776655442 2467778875 897654 2333344
Q ss_pred HHHHHHH
Q 004149 759 FLNIGLW 765 (771)
Q Consensus 759 ~~~i~~w 765 (771)
.+.|.+|
T Consensus 273 ~~~i~~~ 279 (280)
T 3qmv_A 273 LAHLGTE 279 (280)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 4444443
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=143.23 Aligned_cols=120 Identities=14% Similarity=0.208 Sum_probs=79.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+.+|.++++... + ..|.||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+...........
T Consensus 11 ~~~~~~~~~~~~------g--~g~~~vllHG~~~~--~~~w~~~~~~l~-~~~~vi~~Dl~G---~G~s~~~~~~~~~~~ 76 (291)
T 3qyj_A 11 DTTEARINLVKA------G--HGAPLLLLHGYPQT--HVMWHKIAPLLA-NNFTVVATDLRG---YGDSSRPASVPHHIN 76 (291)
T ss_dssp ECSSCEEEEEEE------C--CSSEEEEECCTTCC--GGGGTTTHHHHT-TTSEEEEECCTT---STTSCCCCCCGGGGG
T ss_pred ecCCeEEEEEEc------C--CCCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEcCCC---CCCCCCCCCCccccc
Confidence 345667765432 1 24679999998765 446777777774 589999999999 444422111100111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
...+++.+.+..+.+. ...+++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~--l~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 130 (291)
T 3qyj_A 77 YSKRVMAQDQVEVMSK--LGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130 (291)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCC
Confidence 2344444444334433 23468999999999999999999999999999988753
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=143.36 Aligned_cols=104 Identities=23% Similarity=0.450 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCc-cccchhhHHHHHHHHHHcCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKV-GSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~-~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.|+||++||++.+ ...|...+..|++ .+|.|+++|+|| +|.+.... ...+ ....++|+.+.++.+... +
T Consensus 38 ~p~lvllHG~~~~--~~~w~~~~~~L~~~~~~~via~Dl~G---hG~S~~~~-~~~~~~~~~a~dl~~~l~~l~~~--~- 108 (316)
T 3c5v_A 38 GPVLLLLHGGGHS--ALSWAVFTAAIISRVQCRIVALDLRS---HGETKVKN-PEDLSAETMAKDVGNVVEAMYGD--L- 108 (316)
T ss_dssp SCEEEEECCTTCC--GGGGHHHHHHHHTTBCCEEEEECCTT---STTCBCSC-TTCCCHHHHHHHHHHHHHHHHTT--C-
T ss_pred CcEEEEECCCCcc--cccHHHHHHHHhhcCCeEEEEecCCC---CCCCCCCC-ccccCHHHHHHHHHHHHHHHhcc--C-
Confidence 4789999997654 4568888888876 389999999999 44442111 0111 112255666666665321 1
Q ss_pred CCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCc
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 650 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~ 650 (771)
.+++.|+||||||.+++.+|.+ +|+ ++++|+.++.
T Consensus 109 ~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~ 145 (316)
T 3c5v_A 109 PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVV 145 (316)
T ss_dssp CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCC
T ss_pred CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEccc
Confidence 2689999999999999999985 576 8999988764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-12 Score=135.45 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=147.0
Q ss_pred EEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec---CCccccc
Q 004149 73 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV---PQTVHGS 148 (771)
Q Consensus 73 ~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~g~ 148 (771)
.++++.++...+...+++... .......++|||||+ |+++.... +...++.+. .++..+.+... ....
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~---~~~~p~~~a~spdg~-l~~~~~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~p--- 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLA---ATQNPTYLALSAKDC-LYSVDKED-DEGGIAAWQIDGQTAHKLNTVVAPGTPP--- 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEE---ECSCCCCEEECTTCE-EEEEEEET-TEEEEEEEEEETTEEEEEEEEEEESCCC---
T ss_pred CEEEEEEcCCCCeEEEeeeee---ccCCcceEEEccCCe-EEEEEecC-CCceEEEEEecCCcEEEeeeeecCCCCC---
Confidence 445555544444433322111 113456789999999 66655432 233455444 45554444432 1222
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-C
Q 004149 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-S 227 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~ 227 (771)
..++|||||++|++.... ...+.+|++. +
T Consensus 89 -------~~~a~spdg~~l~~~~~~-------------------------------------------~~~v~v~~~~~~ 118 (347)
T 3hfq_A 89 -------AYVAVDEARQLVYSANYH-------------------------------------------KGTAEVMKIAAD 118 (347)
T ss_dssp -------SEEEEETTTTEEEEEETT-------------------------------------------TTEEEEEEECTT
T ss_pred -------EEEEECCCCCEEEEEeCC-------------------------------------------CCEEEEEEeCCC
Confidence 488999999988876432 2467777774 4
Q ss_pred CceeeccC--CC--------CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 228 GEVQAVKG--IP--------KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 228 ~~~~~l~~--~~--------~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
+..+.+.. .. ....+..++|+|||+ +++... ....|+++++.
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-----l~v~~~--------------~~~~v~~~~~~--------- 170 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-----LAVIDL--------------GSDKVYVYNVS--------- 170 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-----EEEEET--------------TTTEEEEEEEC---------
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCc-----EEEEeC--------------CCCEEEEEEEC---------
Confidence 44433310 11 111355689999998 444431 22368888872
Q ss_pred hhhcCCCCCCcceec---CC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC--CCCCCCccceeeE
Q 004149 298 ELKESSSEDLPVVNL---TE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDV 371 (771)
Q Consensus 298 ~~~~~~~~~~~~~~l---t~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~ 371 (771)
.+++...+ .. .......++|||||++|++..... ..+.++++.. +....+
T Consensus 171 -------~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~~~g~~~~~------- 226 (347)
T 3hfq_A 171 -------DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS----------SQIASLKYDTQTGAFTQL------- 226 (347)
T ss_dssp -------TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------TEEEEEEEETTTTEEEEE-------
T ss_pred -------CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC----------CEEEEEEecCCCCceEEe-------
Confidence 24443322 11 122355689999999887766442 3466666553 332111
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe---cCCCCCceeeEEeecCCEEE
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s~d~~~l~ 448 (771)
..+... ...+.+. .....++|+|||++|+++....+...+|.++. +|+.+.+ ...........|++||++|+
T Consensus 227 -~~~~~~-~~~~~~~--~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 227 -GIVKTI-PADYTAH--NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-DGHLTLIQQISTEGDFPRDFDLDPTEAFVV 301 (347)
T ss_dssp -EEEESS-CTTCCSC--CEEEEEEECTTSCEEEEEEETTTEEEEEEECG-GGCEEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred -eeeeec-CCCCCCC--CcceeEEECCCCCEEEEEeCCCCEEEEEEECC-CCcEEEeEEEecCCCCcCeEEECCCCCEEE
Confidence 000000 0011100 01345789999998888776666666666653 3444433 22222345578999999887
Q ss_pred EEEeCCCCCCeEEEEEe
Q 004149 449 AVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 449 ~~~s~~~~p~~l~~~~~ 465 (771)
+...... .+.++++
T Consensus 302 v~~~~~~---~v~v~~~ 315 (347)
T 3hfq_A 302 VVNQNTD---NATLYAR 315 (347)
T ss_dssp EEETTTT---EEEEEEE
T ss_pred EEEcCCC---cEEEEEE
Confidence 7665332 3555443
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=147.71 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=92.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC---------CcEEEEECCCCCCCCChhhhh
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---------GYSLLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~---------G~~V~~~d~rG~~~~g~~~~~ 586 (771)
-+|..++...+.+. .+..|.||++||.+++ ...|...+..|++. ||.|+++|+|| +|.+...
T Consensus 75 i~g~~i~~~~~~~~----~~~~~plll~HG~~~s--~~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G---~G~S~~~ 145 (388)
T 4i19_A 75 IDGATIHFLHVRSP----EPDATPMVITHGWPGT--PVEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPG---FGLSGPL 145 (388)
T ss_dssp ETTEEEEEEEECCS----STTCEEEEEECCTTCC--GGGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTT---SGGGCCC
T ss_pred ECCeEEEEEEccCC----CCCCCeEEEECCCCCC--HHHHHHHHHHHhCcccccCCCCCCeEEEEEcCCC---CCCCCCC
Confidence 36888987777654 2345789999998766 45688888888776 99999999999 5554321
Q ss_pred cCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 587 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
.. .....+++.+.+..+.+. ++.++++++||||||.+++.++.++|++++++++.+|..
T Consensus 146 ~~----~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 146 KS----AGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp SS----CCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred CC----CCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 11 123466777766666665 344689999999999999999999999999999998643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=152.36 Aligned_cols=262 Identities=10% Similarity=0.023 Sum_probs=160.7
Q ss_pred EEecCC-CCcceEEEEEeechhhcccceeEEEEEEeecC-CCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC
Q 004149 45 TFNSGN-GNGTQAMFSISQPNLLANKRKKFMLSTVISKE-NENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 122 (771)
Q Consensus 45 ~~~~~s-~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 122 (771)
..+.+| |||++|+|+.+.. +.....||++++.++ ..-...++ .....++|||||+.|+|++....+
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~----G~~~~~l~v~dl~~g~~~l~~~~~--------~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMS----GNEVYTIEFKRISDPSQTIADKVS--------GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEECTTTTCEEEEEEESS----SSSCEEEEEEETTCTTCCCCCCEE--------EECSCCEECSSTTEEEEEEECTTC
T ss_pred eeeEecCCCCCEEEEEEeCC----CCceEEEEEEECCCCCEeCCcccc--------CceeeEEEecCCCEEEEEEECCCC
Confidence 356678 9999999998753 233467999887443 21011111 123568999999999999875433
Q ss_pred C-CeEEEEec-CCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCC
Q 004149 123 S-PIQFELWS-QSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW 198 (771)
Q Consensus 123 ~-~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (771)
. .++|.... +++. +.+...... ..+.++.|||||++|+|.+...
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~--------~~~~~~~~SpDg~~l~~~~~~~------------------------ 292 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNP--------LFSAFMYKAADTNTLCIGSQSP------------------------ 292 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCT--------TCEEEEEECTTSSEEEEEEECS------------------------
T ss_pred CCCEEEEEECCCCchhcEEEEecCCC--------ceEEEEEECCCCCEEEEEecCC------------------------
Confidence 3 36777773 3332 223322111 1124789999999999986432
Q ss_pred CCcccccCCcCcccCCccCceEEEEEccCC--ce--eeccCCCCCCccceEEEecC---CCCCccEEEEEeecCcceeee
Q 004149 199 KGQGDWEEDWGETYAGKRQPSLFVININSG--EV--QAVKGIPKSLSVGQVVWAPL---NEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 199 ~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~--~~l~~~~~~~~~~~~~wspD---g~~~~~~l~~~~~~~~~~~~g 271 (771)
....||++|++++ +. +.+ ++.. ..+.|+|| |+. |+|.++..+
T Consensus 293 -----------------~~~~l~~~d~~~~~~~~~~~~l--~~~~---~~~~~s~~~~~g~~----l~~~t~~~~----- 341 (751)
T 2xe4_A 293 -----------------ETAEVHLLDLRKGNAHNTLEIV--RPRE---KGVRYDVQMHGTSH----LVILTNEGG----- 341 (751)
T ss_dssp -----------------SCEEEEEEESSSCTTCCCEEES--SCCC---TTCCEEEEEETTTE----EEEEECTTT-----
T ss_pred -----------------CCceEEEEECCCCCCCceeEEe--ecCC---CCceEEEeeeeCCE----EEEEeCCCC-----
Confidence 2378999999886 45 666 3432 23456666 888 999986541
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCC-Cccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
..+.+||.+++ ++ +..+. |........-..|++++++|+|....+ +..
T Consensus 342 -----a~~~~L~~~d~-----------------~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~--------g~~ 391 (751)
T 2xe4_A 342 -----AVNHKLLIAPR-----------------GQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA--------GLT 391 (751)
T ss_dssp -----CTTCEEEEEET-----------------TSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET--------TEE
T ss_pred -----CCCcEEEEEcC-----------------CCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC--------CEE
Confidence 12348999997 43 34344 433333223345677789999988775 257
Q ss_pred cceeeec-------CCCC-CCCCccceeeEEecccccCCCCCcccccCCCCCCcc----ccCCCEEEEEeeeCC-eeEEE
Q 004149 350 SLHRIDW-------PTNG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW----LSDGCTMLLSSIWGS-SQVII 416 (771)
Q Consensus 350 ~l~~~d~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~----s~dg~~l~~~~~~~~-~~~l~ 416 (771)
+|+++++ .+++ .+.++.... . ....+.+ +.|++.|+++.+... ...+|
T Consensus 392 ~l~~~dl~~~~~~~~~g~~~~~l~l~~~-----------~--------~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~ 452 (751)
T 2xe4_A 392 RIWTMMADSQDGVFKAGTGLREVVMEEP-----------I--------FTVHLVESQMLEYEEPTFRMEYSSLATPNTWF 452 (751)
T ss_dssp EEEEEECCTTTSCCCTTTCCEECCCCCS-----------S--------CEEEECGGGCCCTTCSCEEEEEEETTEEEEEE
T ss_pred EEEEEecccccccccCCccceEECCCCc-----------e--------eEEEeccCcccCCCCCEEEEEEeCCCCCCEEE
Confidence 8999996 4443 333211100 0 0011222 557777777766443 45799
Q ss_pred EEECCCCcEEEecC
Q 004149 417 SVNVSSGELLRITP 430 (771)
Q Consensus 417 ~~d~~tg~~~~l~~ 430 (771)
.+|+.+++.+.++.
T Consensus 453 ~~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 453 DVSPQDHSRTAVKV 466 (751)
T ss_dssp EECTTTCCEEEEEE
T ss_pred EEECCCCcEEEEec
Confidence 99999999888764
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-15 Score=162.55 Aligned_cols=228 Identities=15% Similarity=0.141 Sum_probs=140.6
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCC-cEEEEECCC-CCCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~V~~~d~r-G~~~~g~~~~~~~~~~ 591 (771)
+.|++ ...+|.|+. ..++.|+||++|||++..... .+......|+++| ++|+.+||| |..+++...... ...
T Consensus 79 ~edcL--~l~v~~P~~--~~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~ 153 (489)
T 1qe3_A 79 SEDCL--YVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAY 153 (489)
T ss_dssp CSCCC--EEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTS
T ss_pred CCCCC--EEEEEeCCC--CCCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccC
Confidence 34454 445778874 234589999999988654332 2222345666665 999999999 332343221100 012
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCccchhhhhcCCCCCcch
Q 004149 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWC 666 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~~~~~~~~~~~~~~~ 666 (771)
.+...+.|+.++++|+.++. ..|++||+|+|+|+||++++.++... +++|+++|+.+|..++......... ...
T Consensus 154 ~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~-~~~ 232 (489)
T 1qe3_A 154 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAAST-AAA 232 (489)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHH-HHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHH-HHH
Confidence 23344789999999998752 36899999999999999998887653 5789999999997632211100000 001
Q ss_pred hhhhccCC--CCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 667 YVESYGSK--GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 667 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
+...+++. ....+...+. + +.+...+++........|.+++++..|..+.+++..++++..+..++++.+-..++
T Consensus 233 ~~~~~g~~~~~~~~Lr~~~~-~--~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~~~g~~~~ 309 (489)
T 1qe3_A 233 FLQVLGINESQLDRLHTVAA-E--DLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRD 309 (489)
T ss_dssp HHHHHTCCTTCGGGGGTSCH-H--HHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETT
T ss_pred HHHHcCCCHHHHHHHHcCCH-H--HHHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCCEEEeeecc
Confidence 11222221 1111111111 1 11111112211112345678889999999999999999888888899999999999
Q ss_pred CCccCCC
Q 004149 745 DVHGIER 751 (771)
Q Consensus 745 ~~H~~~~ 751 (771)
++|.+..
T Consensus 310 Eg~~~~~ 316 (489)
T 1qe3_A 310 EGYLFFT 316 (489)
T ss_dssp GGGGTCC
T ss_pred hhHhhcc
Confidence 9998764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-13 Score=136.44 Aligned_cols=235 Identities=13% Similarity=0.167 Sum_probs=164.3
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
++++|++|+|.... +...+|.+. +++..++++... .--+++||++|+|......+...
T Consensus 21 ~~~~g~~iy~~n~~--d~~~ly~~~~dg~~~~~l~~~~--------------~~~i~~~g~~Iyy~~~~~~~~~~----- 79 (302)
T 3s25_A 21 FCESDGEVFFSNTN--DNGRLYAMNIDGSNIHKLSNDT--------------AMYINADKNYVYYVRNNNQKITS----- 79 (302)
T ss_dssp EEEETTEEEEEEGG--GTTEEEEEETTSCSCEEEEEEE--------------EEEEEECSSEEEEEEECC----------
T ss_pred EEEeCCEEEEEeCC--CCceEEEEcCCCCCCEEccCCc--------------eeeEEEcCCEEEEEECCCCcccc-----
Confidence 46799999887653 346799999 666777776532 33478999999999765421100
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
..+....+..||.+++++++.+.| .... ...|+|+|++ |+|+...
T Consensus 80 -------------------------~~~~~~n~~~Iy~i~~dg~~~~~l--~~~~----~~~~s~~g~~----Iy~~~~~ 124 (302)
T 3s25_A 80 -------------------------QTFFSYDRNSLCRIKRNGHGSTVL--DPDP----CIYASLIGNY----IYYLHYD 124 (302)
T ss_dssp --------------------------CCSSCCSEEEEEEETTSCCCEEE--ECSC----EEEEEEETTE----EEEEEES
T ss_pred -------------------------cceeccCCCeEEEEeCCCCcceEe--ecCC----ccEEEEeCCE----EEEEeec
Confidence 000011357899999999998888 3322 2379999999 9998621
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. .....||++++ ++...++|+.+.. +.|+|+|++|+|.+..
T Consensus 125 ~-----------~~~~~Iy~~~~-----------------dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g------- 165 (302)
T 3s25_A 125 T-----------QTATSLYRIRI-----------------DGEEKKKIKNHYL----FTCNTSDRYFYYNNPK------- 165 (302)
T ss_dssp S-----------SSCEEEEEEET-----------------TSCCCEEEESSCC----CCSEEETTEEEEECTT-------
T ss_pred C-----------CCCceEEEEEC-----------------CCCCeEEEeCCCc----eEeeEECCEEEEEeCC-------
Confidence 1 12348999999 7777888887643 5679999999999862
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+|+++++.++..+.+..+. .. .+++|+++.|+++....+ .+|++++++++.
T Consensus 166 ---~~~Iy~~~l~g~~~~~l~~~~----------------------~~-~~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~ 218 (302)
T 3s25_A 166 ---NGQLYRYDTASQSEALFYDCN----------------------CY-KPVVLDDTNVYYMDVNRD-NAIVHVNINNPN 218 (302)
T ss_dssp ---TCCEEEEETTTTEEEEEECSC----------------------EE-EEEEEETTEEEEEEGGGT-TEEEEECSSSCC
T ss_pred ---CceEEEEECCCCCEEEEeCCC----------------------cc-ceeeecCCEEEEEEcCCC-cEEEEEECCCCC
Confidence 357999999876654332211 01 135699999998765433 789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
.+.|+.... +.+++++++|+++..... ..|+++++...
T Consensus 219 ~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~--~~i~~~~~DG~ 256 (302)
T 3s25_A 219 PVVLTEANI----EHYNVYGSLIFYQRGGDN--PALCVVKNDGT 256 (302)
T ss_dssp CEECSCSCE----EEEEEETTEEEEEECSSS--CEEEEEETTSC
T ss_pred eEEEeCCCc----ceEEECCCEEEEEECCCC--cEEEEEECCCC
Confidence 888875432 569999999988765433 78999887643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=144.70 Aligned_cols=284 Identities=10% Similarity=0.038 Sum_probs=165.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCC-CeEEEEec--CCcc-----eEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENES-PIQFELWS--QSQL-----EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~-~~~~~~~~--~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+..++|||||++||-.+.....- .....+|+ .+.. ........ .+.+++|+||++.|+ .
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~----------~V~~~~~s~d~~~l~-~ 111 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEA----------GVTDVAWVSEKGILV-A 111 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSS----------CEEEEEEETTTEEEE-E
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCC----------CEEEEEEcCCCCEEE-E
Confidence 4588999999999999876532100 11233342 1111 01111111 236899999997554 4
Q ss_pred ecCCCCCCCCccCCCCCCCCC----CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEE
Q 004149 171 AEEPSPSKPTFSLGSTKGGSS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 246 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ 246 (771)
+.+... ..|+......... ...+......+.|++|....+++.....|.+||+.+++..... ......+..++
T Consensus 112 s~dg~v--~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~ 188 (357)
T 4g56_B 112 SDSGAV--ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVA 188 (357)
T ss_dssp ETTSCE--EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEE
T ss_pred ECCCEE--EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEE
Confidence 544432 2444322221111 1123344456678998766777777889999999998765541 23345678899
Q ss_pred EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eec--CCCCcccccee
Q 004149 247 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL--TESISSAFFPR 323 (771)
Q Consensus 247 wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l--t~~~~~~~~p~ 323 (771)
|+|+++. ++.++. .+..|.++|+ .+++. ..+ ......+....
T Consensus 189 ~s~~~~~----~~~s~~--------------~dg~v~~wd~-----------------~~~~~~~~~~~~~~~~~v~~v~ 233 (357)
T 4g56_B 189 ACPGKDT----IFLSCG--------------EDGRILLWDT-----------------RKPKPATRIDFCASDTIPTSVT 233 (357)
T ss_dssp ECTTCSS----CEEEEE--------------TTSCEEECCT-----------------TSSSCBCBCCCTTCCSCEEEEE
T ss_pred EccCCCc----eeeeec--------------cCCceEEEEC-----------------CCCceeeeeeeccccccccchh
Confidence 9999986 555442 2336888887 44443 222 23344578899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l 403 (771)
|+|++..++.....+ ..|.+||+.+++....... +...+..++|+||++.+
T Consensus 234 ~sp~~~~~la~g~~d----------~~i~~wd~~~~~~~~~~~~-------------------~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 234 WHPEKDDTFACGDET----------GNVSLVNIKNPDSAQTSAV-------------------HSQNITGLAYSYHSSPF 284 (357)
T ss_dssp ECTTSTTEEEEEESS----------SCEEEEESSCGGGCEEECC-------------------CSSCEEEEEECSSSSCC
T ss_pred hhhcccceEEEeecc----------cceeEEECCCCcEeEEEec-------------------cceeEEEEEEcCCCCCE
Confidence 999976554443332 3588999877654221111 01124567899999877
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEee-cCCEEEEEEeCCCCCCeEEEEEec
Q 004149 404 LLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL-DGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~-d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+++...++...|| |+.++++.+.......+....|+| |++.|+.... + ..|.+-++.
T Consensus 285 lasgs~D~~i~iw--d~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~--D--g~v~iW~~~ 342 (357)
T 4g56_B 285 LASISEDCTVAVL--DADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGW--D--HKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEE--CTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEET--T--SCEEEEECC
T ss_pred EEEEeCCCEEEEE--ECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcC--C--CeEEEEECC
Confidence 7777766665555 888888877765555566678888 6665543332 2 235555553
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=135.90 Aligned_cols=269 Identities=12% Similarity=0.080 Sum_probs=165.0
Q ss_pred ccceEEEeCCC----CCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPS----GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
..+...+|+|+ ++.|+..+..+ .+.+|+ .+.......+. +..+. +.++.|+|+++.|+..+.
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~-----~v~vW~~~~~~~~~~~~l~-gh~~~------v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDD-----LVKVWKWRDERLDLQWSLE-GHQLG------VVSVDISHTLPIAASSSL 100 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTS-----CEEEEEEETTEEEEEEEEC-CCSSC------EEEEEECSSSSEEEEEET
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCC-----CEEEEECCCCCeeeeeeec-cCCCC------EEEEEECCCCCEEEEEeC
Confidence 45889999986 45666554432 445552 22222222221 11112 268999999998888776
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
+...+ .|+.....................|+++....+++.....+.+||+.+++..... ......+..++|+|||+
T Consensus 101 D~~i~--lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 101 DAHIR--LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGK 177 (321)
T ss_dssp TSEEE--EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSS
T ss_pred CCcEE--EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCC
Confidence 65432 3332222111111122233345678888766677777889999999988765431 23334577899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
. |+..+ .+..|.++|+ .+++ ...+..+...+....|||||+.|
T Consensus 178 ~----lasg~---------------~dg~i~iwd~-----------------~~~~~~~~~~~h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 178 Y----LASGA---------------IDGIINIFDI-----------------ATGKLLHTLEGHAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCCCEEEECTTSCEE
T ss_pred E----EEEEc---------------CCCeEEEEEC-----------------CCCcEEEEEcccCCceeEEEEcCCCCEE
Confidence 7 77765 2347888898 5554 45566667778999999999998
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+..+.+. .|.+||+.+++......+ +...+..++|+|||+.| ++...++
T Consensus 222 ~s~s~dg-----------~i~iwd~~~~~~~~~~~~-------------------h~~~v~~~~~sp~~~~l-~s~s~D~ 270 (321)
T 3ow8_A 222 VTASDDG-----------YIKIYDVQHANLAGTLSG-------------------HASWVLNVAFCPDDTHF-VSSSSDK 270 (321)
T ss_dssp EEECTTS-----------CEEEEETTTCCEEEEECC-------------------CSSCEEEEEECTTSSEE-EEEETTS
T ss_pred EEEcCCC-----------eEEEEECCCcceeEEEcC-------------------CCCceEEEEECCCCCEE-EEEeCCC
Confidence 8776553 488899876543211000 01124567899999865 4555566
Q ss_pred eeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEE
Q 004149 412 SQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
...|| |+.+++.... ......+....|+++++.|+...
T Consensus 271 ~v~iw--d~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 271 SVKVW--DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp CEEEE--ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEE--eCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 65555 7777765543 33344556678889988776554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=138.08 Aligned_cols=236 Identities=15% Similarity=0.131 Sum_probs=141.5
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCC---ccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEE
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPF---PVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEF 139 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~---~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~ 139 (771)
+........++++++.........+....+ ......+...+|||||+++|+.+... ...+.+|+ .++.....
T Consensus 97 l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~---d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 97 ITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV---PAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS---SCEEEEEETTTTEEEEEE
T ss_pred EEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC---CCEEEEeECCCCcEEEEe
Confidence 333444555666666544432222221111 11112356789999999998876432 23566773 33333333
Q ss_pred ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCce
Q 004149 140 HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 219 (771)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~ 219 (771)
..... | ..++|||||+.|+..+. ..
T Consensus 174 ~~~~~----V------~~v~fspdg~~l~s~s~---------------------------------------------~~ 198 (365)
T 4h5i_A 174 ETRGE----V------KDLHFSTDGKVVAYITG---------------------------------------------SS 198 (365)
T ss_dssp ECSSC----C------CEEEECTTSSEEEEECS---------------------------------------------SC
T ss_pred CCCCc----e------EEEEEccCCceEEeccc---------------------------------------------ee
Confidence 22222 2 68999999999988642 34
Q ss_pred EEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhh
Q 004149 220 LFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298 (771)
Q Consensus 220 l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 298 (771)
+.+|+..+++... .........+..++|+|||+. ++..+.... ....|+.+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~----l~~~s~d~~-----------~~~~i~~~~~----------- 252 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV----LIAASLKKG-----------KGIVLTKISI----------- 252 (365)
T ss_dssp EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE----EEEEEESSS-----------CCEEEEEEEE-----------
T ss_pred EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE----EEEEecCCc-----------ceeEEeeccc-----------
Confidence 5667766665432 211233446788999999998 877763322 1124666665
Q ss_pred hhcCCCCCCc-----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 299 LKESSSEDLP-----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 299 ~~~~~~~~~~-----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
.... ...+..+...+.+.+|||||+.||..+.+. .|.+||+.+++....
T Consensus 253 ------~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-----------~V~iwd~~~~~~~~~--------- 306 (365)
T 4h5i_A 253 ------KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-----------SIALVKLKDLSMSKI--------- 306 (365)
T ss_dssp ------ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-----------CEEEEETTTTEEEEE---------
T ss_pred ------ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-----------EEEEEECCCCcEEEE---------
Confidence 2221 234555666788999999999999887663 488999887654211
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
+.. .+...+..++|||||++| ++.+.++..+||.+..
T Consensus 307 ~~~---------gH~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 307 FKQ---------AHSFAITEVTISPDSTYV-ASVSAANTIHIIKLPL 343 (365)
T ss_dssp ETT---------SSSSCEEEEEECTTSCEE-EEEETTSEEEEEECCT
T ss_pred ecC---------cccCCEEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Confidence 000 011235678999999855 6777888888887653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=140.81 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=160.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+...+|||||++|+.....+ .+.+| ..+.....+.... + .+..+.|+|||+.|+..+.+....
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~---~------~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENG-----ELRLWNKTGALLNVLNFHR---A------PIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECCCC---S------CEEEEEECTTSSEEEEEETTCCEE
T ss_pred CceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeeeeccCCC---c------cEEEEEECCCCCEEEEEecCCeEE
Confidence 4688999999999998876543 34455 3343333332111 1 226899999999999887655322
Q ss_pred CCCccCCCCCCCCCCccCC---------------CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCN---------------SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSV 242 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~ 242 (771)
.|+.............. .......|.++ +..+++.....|++||+.+++..... ......+
T Consensus 175 --iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~i 250 (425)
T 1r5m_A 175 --LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKL-IGHHGPI 250 (425)
T ss_dssp --EEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEE-CCCSSCE
T ss_pred --EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeee-ccCCCce
Confidence 22221111100000011 11334556666 55666777889999999987654431 3344567
Q ss_pred ceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccc
Q 004149 243 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFF 321 (771)
Q Consensus 243 ~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~ 321 (771)
..++|+||++. |+..+ ....|+++|+ ..++ ...+..+...+..
T Consensus 251 ~~~~~~~~~~~----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 251 SVLEFNDTNKL----LLSAS---------------DDGTLRIWHG-----------------GNGNSQNCFYGHSQSIVS 294 (425)
T ss_dssp EEEEEETTTTE----EEEEE---------------TTSCEEEECS-----------------SSBSCSEEECCCSSCEEE
T ss_pred EEEEECCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCccceEecCCCccEEE
Confidence 88999999997 77665 3347888887 4443 4555556677899
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004149 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~ 401 (771)
..|+||| .|+..+.+ ..|.+||+.+++.... +.. ....+..++|+||++
T Consensus 295 ~~~~~~~-~l~~~~~d-----------~~i~i~d~~~~~~~~~----------~~~---------~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMD-----------GSVRLWSLKQNTLLAL----------SIV---------DGVPIFAGRISQDGQ 343 (425)
T ss_dssp EEEETTT-EEEEEETT-----------SEEEEEETTTTEEEEE----------EEC---------TTCCEEEEEECTTSS
T ss_pred EEECCCC-EEEEEeCC-----------CcEEEEECCCCcEeEe----------ccc---------CCccEEEEEEcCCCC
Confidence 9999999 66655543 3588999876543211 100 011245678999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCc---------------------EEEecCCCC--CceeeEEeecCCEEEEEEe
Q 004149 402 TMLLSSIWGSSQVIISVNVSSGE---------------------LLRITPAES--NFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~tg~---------------------~~~l~~~~~--~~~~~~~s~d~~~l~~~~s 452 (771)
.|+. ...++...+| ++.+++ +..+..... .+....|+++++.|+....
T Consensus 344 ~l~~-~~~dg~i~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 344 KYAV-AFMDGQVNVY--DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EEEE-EETTSCEEEE--ECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEEE-EECCCeEEEE--ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 6654 4445555555 555555 333433322 4566788888887765543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-13 Score=139.11 Aligned_cols=234 Identities=15% Similarity=0.118 Sum_probs=150.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+....|+|++..++..+... .+.+|+ .++..+.+.. .... ..++|||||+.|+..+.+..
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~-----~i~lWd~~~~~~~~~~~~~~~~~----------~~~~~spdg~~l~~g~~dg~ 145 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDA-----HIRLWDLENGKQIKSIDAGPVDA----------WTLAFSPDSQYLATGTHVGK 145 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCTTCC----------CCEEECTTSSEEEEECTTSE
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCEEEEEeCCCccE----------EEEEECCCCCEEEEEcCCCc
Confidence 5578899999999888766544 566773 3333333322 1122 58999999999998765543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.. .|......................|++|....+++.....|.+||+.+++..... ......+..++|+|||+.
T Consensus 146 v~--i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spd~~~-- 220 (321)
T 3ow8_A 146 VN--IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQL-- 220 (321)
T ss_dssp EE--EEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCCCEEEECTTSCE--
T ss_pred EE--EEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-cccCCceeEEEEcCCCCE--
Confidence 21 2222111111111122233345678888766677777889999999988765441 234456889999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+ .+..|.++|+ ..++ ...+..+...+...+|+|||+.|+..
T Consensus 221 --l~s~s---------------~dg~i~iwd~-----------------~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 266 (321)
T 3ow8_A 221 --LVTAS---------------DDGYIKIYDV-----------------QHANLAGTLSGHASWVLNVAFCPDDTHFVSS 266 (321)
T ss_dssp --EEEEC---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --EEEEc---------------CCCeEEEEEC-----------------CCcceeEEEcCCCCceEEEEECCCCCEEEEE
Confidence 76655 2346888887 4443 45666677778999999999998877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
+.+. .|.+||+.+++....... +...+..++|+|||+.| ++...++...
T Consensus 267 s~D~-----------~v~iwd~~~~~~~~~~~~-------------------h~~~v~~v~~s~~g~~l-~s~~~d~~i~ 315 (321)
T 3ow8_A 267 SSDK-----------SVKVWDVGTRTCVHTFFD-------------------HQDQVWGVKYNGNGSKI-VSVGDDQEIH 315 (321)
T ss_dssp ETTS-----------CEEEEETTTTEEEEEECC-------------------CSSCEEEEEECTTSSEE-EEEETTCCEE
T ss_pred eCCC-----------cEEEEeCCCCEEEEEEcC-------------------CCCcEEEEEECCCCCEE-EEEeCCCeEE
Confidence 7653 488899877553211000 01134567899999866 5666677767
Q ss_pred EEE
Q 004149 415 IIS 417 (771)
Q Consensus 415 l~~ 417 (771)
||-
T Consensus 316 vwd 318 (321)
T 3ow8_A 316 IYD 318 (321)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=148.54 Aligned_cols=264 Identities=17% Similarity=0.142 Sum_probs=166.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+...+|+|||+.|+...... .+.+| ..++..+.... ..+ .+..++|+|||+.|+..+.+...+
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~-----~i~~w~~~~~~~~~~~~---h~~------~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDK-----TVKLWNRNGQLLQTLTG---HSS------SVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECC---CSS------CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEec---CCC------CeEEEEECCCCCEEEEEeCCCeEE
Confidence 4577899999999998776543 45566 34443333221 111 125889999999999887665432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|+... ........+........|+++....+.+.....|.+||..+.....+ ......+..++|||||+.
T Consensus 329 --~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~---- 399 (577)
T 2ymu_A 329 --LWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQT---- 399 (577)
T ss_dssp --EEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSC----
T ss_pred --EEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCE----
Confidence 232111 00011111222223456788866666666778899999876666666 344556788999999998
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+..+ .+..|.++|. .+.....+..+...+....||||++.|+..+.+
T Consensus 400 l~~~~---------------~d~~v~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 400 IASAS---------------DDKTVKLWNR-----------------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEEEE---------------TTSEEEEECT-----------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEe---------------CCCEEEEEeC-----------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 88766 2236777886 555566677777778899999999999887755
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||..+.....+. . +...+..++|+|||+.|+ +...++...||
T Consensus 448 ~-----------~v~~w~~~~~~~~~~~-----------~---------~~~~v~~~~~spd~~~la-s~~~d~~i~iw- 494 (577)
T 2ymu_A 448 K-----------TVKLWNRNGQLLQTLT-----------G---------HSSSVRGVAFSPDGQTIA-SASDDKTVKLW- 494 (577)
T ss_dssp S-----------EEEEEETTSCEEEEEE-----------C---------CSSCEEEEEECTTSCEEE-EEETTSEEEEE-
T ss_pred C-----------EEEEEECCCCEEEEEc-----------C---------CCCCEEEEEEcCCCCEEE-EEeCCCEEEEE-
Confidence 3 4778886432111110 0 011244678999998664 55555555555
Q ss_pred EECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 418 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
|..+..++.+......+....|+||++.|+...
T Consensus 495 -~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 495 -NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp -ETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred -cCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 665444555655555566678999998776554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-12 Score=138.59 Aligned_cols=293 Identities=6% Similarity=0.025 Sum_probs=166.9
Q ss_pred CCCCcceEEEEEeech--hhcccceeEEEEEEeecCCCC-ccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 49 GNGNGTQAMFSISQPN--LLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.+|||+.+.++.+... +......+.+.+|++...... ...... ....+..++|||||++||.....+
T Consensus 20 ~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg----- 89 (416)
T 2pm9_A 20 WSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-----VDSKFNDLDWSHNNKIIAGALDNG----- 89 (416)
T ss_dssp BCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-----CSSCEEEEEECSSSSCEEEEESSS-----
T ss_pred eCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-----cCCceEEEEECCCCCeEEEEccCC-----
Confidence 3678885555432110 001123456777776443211 111111 124688999999999998876543
Q ss_pred EEEEec-CC---cceEEEecCCcccccccCCCcccceeecCC-CCeEEEEecCCCCCCCCccCCCCC------CC---CC
Q 004149 126 QFELWS-QS---QLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSLGSTK------GG---SS 191 (771)
Q Consensus 126 ~~~~~~-~~---~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~~~~~------~~---~~ 191 (771)
.+.+|+ .. ....+..+. ...+ .+.++.|+|| ++.|+..+.+.... .|+..... .. ..
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~~l~s~~~dg~v~--iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFS-NHSS------SVKTVKFNAKQDNVLASGGNNGEIF--IWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECC-CSSS------CCCEEEECSSSTTBEEEECSSSCEE--BCBTTTTSSCTTTCCCBCCCC
T ss_pred eEEEeecccccccccchhhcc-CCcc------ceEEEEEcCCCCCEEEEEcCCCeEE--EEECCCCcccccccccccccc
Confidence 344552 11 112222221 1111 2268999999 77777766554332 34322221 11 11
Q ss_pred CccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccCCCC-----CCccceEEEecCCCCCccEEEEEeecC
Q 004149 192 DKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-----~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
...+........|.++.+ ..+++.....|.+||+.+++......... ...+..++|+|||.. +++++...
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~d 236 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST----RVATATGS 236 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT----EEEEEECC
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC----EEEEEECC
Confidence 123344455677888844 34455667889999999887655421221 456889999999976 66665221
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-c-ceecC-CCCccccceeecC-CCCEEEEEecCCCCC
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-P-VVNLT-ESISSAFFPRFSP-DGKFLVFLSAKSSVD 341 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~-~~~lt-~~~~~~~~p~~Sp-DG~~l~f~~~~~~~~ 341 (771)
+ ....|+++|+ .++ . ...+. .+...+..+.||| ||+.|+..+.+
T Consensus 237 ~-----------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---- 284 (416)
T 2pm9_A 237 D-----------NDPSILIWDL-----------------RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD---- 284 (416)
T ss_dssp S-----------SSCCCCEEET-----------------TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS----
T ss_pred C-----------CCceEEEEeC-----------------CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC----
Confidence 1 1126788887 332 2 34444 5666789999999 89988877654
Q ss_pred CCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 342 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 342 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
..|.+||+.+++.... +.. +...+..++|+||+..++++...++...|| ++.
T Consensus 285 -------g~v~~wd~~~~~~~~~----------~~~---------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw--~~~ 336 (416)
T 2pm9_A 285 -------NTVLLWNPESAEQLSQ----------FPA---------RGNWCFKTKFAPEAPDLFACASFDNKIEVQ--TLQ 336 (416)
T ss_dssp -------SEEEEECSSSCCEEEE----------EEC---------SSSCCCCEEECTTCTTEEEECCSSSEEEEE--ESC
T ss_pred -------CCEEEeeCCCCcccee----------ecC---------CCCceEEEEECCCCCCEEEEEecCCcEEEE--Ecc
Confidence 2588999877653211 100 112356789999995566777666666666 444
Q ss_pred CCc
Q 004149 422 SGE 424 (771)
Q Consensus 422 tg~ 424 (771)
+++
T Consensus 337 ~~~ 339 (416)
T 2pm9_A 337 NLT 339 (416)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.9e-13 Score=138.33 Aligned_cols=279 Identities=9% Similarity=-0.011 Sum_probs=171.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+..++|||||+.+++....+ .+ ..+ .......+.... ..+ .+.+++|+|||+.|+..+ +...
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~--h~~------~v~~~~~~~~~~~l~~~~-dg~i- 74 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPD----AL-IGPGIPRHARQINTLN--HGE------VVCAVTISNPTRHVYTGG-KGCV- 74 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTT----SS-SSTTCCSEEEEEEEEC--CSS------CCCEEEECSSSSEEEEEC-BSEE-
T ss_pred CceeEEEECCCCCEEEeecCCC----cE-eccccCCccccceecc--CCC------ceEEEEEecCCcEEEEcC-CCeE-
Confidence 3477899999999998764332 11 222 222212222211 111 126999999999998876 3322
Q ss_pred CCCccCCCCCCCCCCc-----cCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCC
Q 004149 178 KPTFSLGSTKGGSSDK-----DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg 251 (771)
..|+........... .+........|.++....+++.....|.+||+.+++..... -......+..+.|+||+
T Consensus 75 -~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 75 -KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp -EEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS
T ss_pred -EEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC
Confidence 234332222111111 22333345678888656666677789999999988732221 02334457789999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCE
Q 004149 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
+. |+..+ ....|+++|+ .+++ ...+..+...+....|+|||+.
T Consensus 154 ~~----l~~~~---------------~dg~v~~~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 154 KV----CFSCC---------------SDGNIAVWDL-----------------HNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CE----EEEEe---------------CCCcEEEEeC-----------------CCCceeeeeecccCceEEEEECCCCCE
Confidence 87 77655 2347888998 4444 4455556677889999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|+..+.+ ..|++||+.+++..... .. ...+..++|+||++.|++.. .+
T Consensus 198 l~~~~~d-----------g~i~~~d~~~~~~~~~~----------~~----------~~~v~~~~~s~~~~~l~~~~-~~ 245 (337)
T 1gxr_A 198 LWTGGLD-----------NTVRSWDLREGRQLQQH----------DF----------TSQIFSLGYCPTGEWLAVGM-ES 245 (337)
T ss_dssp EEEEETT-----------SEEEEEETTTTEEEEEE----------EC----------SSCEEEEEECTTSSEEEEEE-TT
T ss_pred EEEEecC-----------CcEEEEECCCCceEeee----------cC----------CCceEEEEECCCCCEEEEEc-CC
Confidence 8877654 35889998775432110 00 01244678999999776543 34
Q ss_pred CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 411 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
+ .++.+++.+++...+......+....|+++++.|+....+ ..+.+.++.+
T Consensus 246 ~--~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~~~~~ 296 (337)
T 1gxr_A 246 S--NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD----NLLNAWRTPY 296 (337)
T ss_dssp S--CEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTT
T ss_pred C--cEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC----CcEEEEECCC
Confidence 4 3666688888888777666666677899999977655532 3566666543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-12 Score=135.92 Aligned_cols=266 Identities=12% Similarity=0.042 Sum_probs=142.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.+|||+.|++..... ...+.+.+++++...+...++.... .........++ ||++|++....+ +.-.+|.
T Consensus 57 ~spdg~~l~~~~~~~-----~~~~~v~~~~~~~~~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~-~~v~~~~ 126 (361)
T 3scy_A 57 PSADGKFVYSVNEFS-----KDQAAVSAFAFDKEKGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSG-GSITVFP 126 (361)
T ss_dssp ECTTSSEEEEEECCS-----STTCEEEEEEEETTTTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTT-TEEEEEE
T ss_pred ECCCCCEEEEEEccC-----CCCCcEEEEEEeCCCCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCC-CEEEEEE
Confidence 478998877664321 1224565555655434444443221 00122334445 899886654322 3333444
Q ss_pred EecCCcceE---EEecCC-cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 129 LWSQSQLEK---EFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 129 ~~~~~~~~~---~~~~~~-~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+...+.... ...... +.....-......++.|||||++|++....
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~------------------------------- 175 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG------------------------------- 175 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-------------------------------
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-------------------------------
Confidence 433332221 111110 000000000011368999999988776321
Q ss_pred cCCcCcccCCccCceEEEEEccCCc-------e------eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 205 EEDWGETYAGKRQPSLFVININSGE-------V------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~-------~------~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...|++|+++... . ..+. .+....+..++|||||+. |+++..
T Consensus 176 ------------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~----l~v~~~-------- 230 (361)
T 3scy_A 176 ------------TDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKF----AYLINE-------- 230 (361)
T ss_dssp ------------TTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSE----EEEEET--------
T ss_pred ------------CCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCE----EEEEcC--------
Confidence 2466777665432 1 1111 333445678999999996 665541
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec------CCCCccccceeecCCCCEEEEEecCCCCCCCCc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 345 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l------t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~ 345 (771)
....|+++++ .++..+.+ .........++|||||++|+......
T Consensus 231 ------~~~~v~v~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~------- 280 (361)
T 3scy_A 231 ------IGGTVIAFRY-----------------ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK------- 280 (361)
T ss_dssp ------TTCEEEEEEE-----------------ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-------
T ss_pred ------CCCeEEEEEe-----------------cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-------
Confidence 2236777777 44433222 11122346889999999886655431
Q ss_pred cccccceeeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004149 346 SATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 346 ~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
...|.++++. ++....+ ..+.. + ..+..++|+|||++|++.....+...+|.+|..+|
T Consensus 281 --~~~i~v~~~~~~~g~~~~~--------~~~~~---g-------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g 340 (361)
T 3scy_A 281 --ADGVAIFKVDETNGTLTKV--------GYQLT---G-------IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG 340 (361)
T ss_dssp --SCEEEEEEECTTTCCEEEE--------EEEEC---S-------SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred --CCEEEEEEEcCCCCcEEEe--------eEecC---C-------CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence 1346666654 4432111 00000 0 12456789999998887776678888999999999
Q ss_pred cEEEecC
Q 004149 424 ELLRITP 430 (771)
Q Consensus 424 ~~~~l~~ 430 (771)
+++.+..
T Consensus 341 ~~~~~~~ 347 (361)
T 3scy_A 341 LLTDIKK 347 (361)
T ss_dssp CEEECSC
T ss_pred cEeecce
Confidence 9887753
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=143.24 Aligned_cols=195 Identities=14% Similarity=0.137 Sum_probs=124.9
Q ss_pred CceEEEEEEecCCCCC-CCCCcEEEEEcCCCCCCCCCcchHHHHHHHH------CCcEEEEECCCCCCCCChhhhh----
Q 004149 518 QKPFEAIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQ---- 586 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~-~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~------~G~~V~~~d~rG~~~~g~~~~~---- 586 (771)
|.+...++|.|+++.+ .+++|+|+++||... ........+.++. .+++||++++.. ...++..
T Consensus 23 ~~~r~~~VylP~~y~~~~~~yPVlylldG~~~---f~~~~~~~~~l~~~~~~~~~~~IvV~i~~~~---R~~dytp~~~~ 96 (331)
T 3gff_A 23 KETREYVIALPEGYAQSLEAYPVVYLLDGEDQ---FDHMASLLQFLSQGTMPQIPKVIIVGIHNTN---RMRDYTPTHTL 96 (331)
T ss_dssp TEEEEEEEECCTTGGGSCCCEEEEEESSHHHH---HHHHHHHHHHHTCSSSCSSCCCEEEEECCSS---HHHHSCSSCCS
T ss_pred CCeEEEEEEeCCCCCCCCCCccEEEEecChhh---hHHHHHHHHHHHhhhhcCCCCEEEEEECCCC---cccccCCCccc
Confidence 5678899999998755 688999999999421 0111223344433 368999988621 1111100
Q ss_pred ----------cCCCCccccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh
Q 004149 587 ----------SLPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 587 ----------~~~~~~~~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 654 (771)
..+...+.....+.+ +.+.++.++..+++.| +|+||||||+++++++.++|+.|+++++.+|.+.+.
T Consensus 97 ~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~F~~~~~~S~~~w~~ 175 (331)
T 3gff_A 97 VLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWFD 175 (331)
T ss_dssp BCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSSCSEEEEESCCTTTT
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchhhheeeEeCchhcCC
Confidence 000001111222222 4455666666566555 899999999999999999999999999999975211
Q ss_pred hhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCC-------ccCcHHHHHHH
Q 004149 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-------RVPVSNGLQYA 727 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-------~vp~~~~~~~~ 727 (771)
. .. ........ .........|+++.+|+.|. .++...+++++
T Consensus 176 ~-------------~~-------------~~~~~~~~-----~~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~l~ 224 (331)
T 3gff_A 176 S-------------PH-------------YLTLLEER-----VVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAFA 224 (331)
T ss_dssp T-------------TH-------------HHHHHHHH-----HHHCCCSSEEEEEEECCCSEETTTEECCHHHHHHHHHH
T ss_pred h-------------HH-------------HHHHHHHH-----hhcccCCCCeEEEEeCCCCCCCccchHHHHHHHHHHHH
Confidence 0 00 00001111 11111245799999999998 57778889999
Q ss_pred HHHHhC---CCCEEEEEeCCCCccCC
Q 004149 728 RALREK---GVETKVIVFPNDVHGIE 750 (771)
Q Consensus 728 ~~l~~~---g~~~~~~~~~~~~H~~~ 750 (771)
+.|++. |+++++.++|+++|+..
T Consensus 225 ~~Lk~~~~~g~~~~~~~~pg~~H~sv 250 (331)
T 3gff_A 225 DKLTKLAPKGLGFMAKYYPEETHQSV 250 (331)
T ss_dssp HHHHHHCCTTEEEEEEECTTCCTTTH
T ss_pred HHHHhccCCCceEEEEECCCCCcccc
Confidence 999986 67899999999999754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-11 Score=131.46 Aligned_cols=279 Identities=10% Similarity=0.011 Sum_probs=173.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|+... ..+.+.+|++... .....+... ...+...+|+|||++|+.....+ .+.
T Consensus 40 ~s~~~~~l~~~~---------~dg~i~vwd~~~~-~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~dg-----~i~ 99 (369)
T 3zwl_B 40 YNKEGDLLFSCS---------KDSSASVWYSLNG-ERLGTLDGH-----TGTIWSIDVDCFTKYCVTGSADY-----SIK 99 (369)
T ss_dssp ECTTSCEEEEEE---------SSSCEEEEETTTC-CEEEEECCC-----SSCEEEEEECTTSSEEEEEETTT-----EEE
T ss_pred EcCCCCEEEEEe---------CCCEEEEEeCCCc-hhhhhhhhc-----CCcEEEEEEcCCCCEEEEEeCCC-----eEE
Confidence 366787776643 2346677666332 122222212 25688999999999998876543 455
Q ss_pred Ee--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004149 129 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+| ..++..........+ ..+.|+|||+.|+......
T Consensus 100 iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~~~-------------------------------- 137 (369)
T 3zwl_B 100 LWDVSNGQCVATWKSPVPV----------KRVEFSPCGNYFLAILDNV-------------------------------- 137 (369)
T ss_dssp EEETTTCCEEEEEECSSCE----------EEEEECTTSSEEEEEECCB--------------------------------
T ss_pred EEECCCCcEEEEeecCCCe----------EEEEEccCCCEEEEecCCc--------------------------------
Confidence 56 344444444433333 6899999999998875431
Q ss_pred CcCcccCCccCceEEEEEccCCce------------eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004149 207 DWGETYAGKRQPSLFVININSGEV------------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~~~~~------------~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
......|.+||+..+.. ..+........+..+.|+|||+. |+..+
T Consensus 138 -------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~------------ 194 (369)
T 3zwl_B 138 -------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY----IIAGH------------ 194 (369)
T ss_dssp -------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE----EEEEE------------
T ss_pred -------cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE----EEEEc------------
Confidence 01236788888766532 11211122226778899999997 77654
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCC--CcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004149 275 CYNRPCALYAVRVSLYKSEASELELKESSSED--LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
....|+++|+ .+ .....+..+...+....|+|||+.|+..+.+ ..|.
T Consensus 195 ---~dg~i~i~d~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~ 243 (369)
T 3zwl_B 195 ---KDGKISKYDV-----------------SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD-----------TNSF 243 (369)
T ss_dssp ---TTSEEEEEET-----------------TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred ---CCCEEEEEEC-----------------CCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC-----------ceEE
Confidence 3347889997 33 3345555666778899999999999877654 2588
Q ss_pred eeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----------eeEEEEEECC
Q 004149 353 RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVS 421 (771)
Q Consensus 353 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~-----------~~~l~~~d~~ 421 (771)
+||+.+++....... ...+..++|+|+++.+++....++ ...+..+|..
T Consensus 244 v~d~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 244 LVDVSTLQVLKKYET--------------------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp EEETTTCCEEEEEEC--------------------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred EEECCCCceeeeecC--------------------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 999887654211110 012346789999998877654331 1257777888
Q ss_pred CCcEEEecC-CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 422 SGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 422 tg~~~~l~~-~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
+++...... ....+....|+++++.|+....+ ..|.+.++..
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~ 346 (369)
T 3zwl_B 304 FEEEIGRVQGHFGPLNTVAISPQGTSYASGGED----GFIRLHHFEK 346 (369)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEEEEEECH
T ss_pred CCcchhheecccCcEEEEEECCCCCEEEEEcCC----CeEEEEECcc
Confidence 877655433 34455667899999877765532 3566666654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=133.87 Aligned_cols=260 Identities=13% Similarity=0.045 Sum_probs=151.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEec---CCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHV---PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
.+..++|||||++|+++...+ +.-.+|.+.. .+...+.+.. ...+ .+++|||||+.|+....
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v----------~~~~~sp~~~~l~~~~~--- 169 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRP----------NAISIAEDDTTVIIADK--- 169 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCE----------EEEEECTTSSEEEEEET---
T ss_pred ceEEEEEcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCc----------eEEEEcCCCCEEEEEeC---
Confidence 478899999999986555433 3334444431 4444444431 2222 58999999999988632
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee----ccCCCCCCccceEEEecC-
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA----VKGIPKSLSVGQVVWAPL- 250 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~----l~~~~~~~~~~~~~wspD- 250 (771)
...+++|++.+++... .. ......+..++|+||
T Consensus 170 -----------------------------------------~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~ 207 (450)
T 2vdu_B 170 -----------------------------------------FGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDS 207 (450)
T ss_dssp -----------------------------------------TSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECT
T ss_pred -----------------------------------------CCcEEEEecCCcccccccceee-ecccCceEEEEEcCCC
Confidence 2578999988776542 10 223346788999999
Q ss_pred --CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-cee-cCCCCccccceeecC
Q 004149 251 --NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN-LTESISSAFFPRFSP 326 (771)
Q Consensus 251 --g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-lt~~~~~~~~p~~Sp 326 (771)
++. |+..+ .+..|+++|+ .++. ... +..+...+..+.||
T Consensus 208 ~~~~~----l~s~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~h~~~v~~~~~s- 250 (450)
T 2vdu_B 208 DGHQF----IITSD---------------RDEHIKISHY-----------------PQCFIVDKWLFGHKHFVSSICCG- 250 (450)
T ss_dssp TSCEE----EEEEE---------------TTSCEEEEEE-----------------SCTTCEEEECCCCSSCEEEEEEC-
T ss_pred CCCcE----EEEEc---------------CCCcEEEEEC-----------------CCCceeeeeecCCCCceEEEEEC-
Confidence 775 66554 2347888887 4444 333 44566778999999
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCc----ccccCCCCCCccccCC
Q 004149 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFP----GLYSSSILSNPWLSDG 400 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~----g~~~~~~~~~~~s~dg 400 (771)
||+.|+..+.+ ..|.+||+.+++..........+..+.... ....|. ......+..+.|+||+
T Consensus 251 d~~~l~s~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 251 KDYLLLSAGGD-----------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp STTEEEEEESS-----------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 99999877754 358999998876422111000000000000 000000 0011234567899999
Q ss_pred CEEEEEeeeCCeeEEEEE-ECCCCcEE---EecCCCCCceeeEEeecCCEEEEEEeCCCCCC------eEEEEEec
Q 004149 401 CTMLLSSIWGSSQVIISV-NVSSGELL---RITPAESNFSWSLLTLDGDNIIAVSSSPVDVP------QVKYGYFV 466 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~-d~~tg~~~---~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~------~l~~~~~~ 466 (771)
+.|++....++...||.+ +..++++. .+... ..+....|++ +.++++..+...|. ++|.++..
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 988776646666677766 33333333 23333 3344455666 46777776766664 66665543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-12 Score=132.65 Aligned_cols=285 Identities=12% Similarity=0.153 Sum_probs=162.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+...+|||||+.||..+..+ .+.+| .++..........+..+. +..++|||||++|+..+.+...+
T Consensus 18 ~v~~l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~------v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRT------VRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSC------EEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCc------EEEEEECCCCCEEEEEECCCcEE
Confidence 477899999999999876543 34555 222221111111222222 36899999999999988766432
Q ss_pred CCCccCCCCC--CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce----eeccCCCCCCccceEEEecCC
Q 004149 178 KPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVKGIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~----~~l~~~~~~~~~~~~~wspDg 251 (771)
.|+..... .......+......+.|+++....+++..+..|.+||+.++.. ..+ ......+..++|+|||
T Consensus 87 --iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 87 --IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp --EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSS
T ss_pred --EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCC
Confidence 23321111 0111223344445677888876667777788999999987642 223 2344467889999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCC
Q 004149 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG 328 (771)
+. |+..+. +..|.++|+ ..+. ...+..+...+.+.+|||||
T Consensus 163 ~~----l~s~s~---------------d~~i~~w~~-----------------~~~~~~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 163 EL----LASASY---------------DDTVKLYRE-----------------EEDDWVCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp SC----EEEEET---------------TSCEEEEEE-----------------ETTEEEEEEEECCCSSCEEEEEECTTS
T ss_pred CE----EEEEeC---------------CCcEEEEEe-----------------cCCCEEEEEEecCCCCceEEEEECCCC
Confidence 98 887762 224666665 3332 24566667778999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCcc-ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEE
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLE-KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~ 406 (771)
++|+..+.+. .|.+|+....+. ..+.. ........+. .+.+.....+..++|++++..| ++
T Consensus 207 ~~l~s~s~D~-----------~v~iW~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~v~~~~~~~~l-~s 269 (345)
T 3fm0_A 207 QRLASCSDDR-----------TVRIWRQYLPGNEQGVACSGSDPSWKCIC-----TLSGFHSRTIYDIAWCQLTGAL-AT 269 (345)
T ss_dssp SEEEEEETTS-----------CEEEEEEECTTCTTCCCCC---CEEEEEE-----EECSSCSSCEEEEEECTTTCCE-EE
T ss_pred CEEEEEeCCC-----------eEEEeccccCCCCccceeeccCCccceeE-----EecCCCCCcEEEEEEecCCCEE-EE
Confidence 9998877653 366666432221 11110 0000000000 0111112235578899999865 45
Q ss_pred eeeCCeeEEEEEECCCCc----E---EEe-cCCCCCceeeEEeecCCEEEEEEe
Q 004149 407 SIWGSSQVIISVNVSSGE----L---LRI-TPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~----~---~~l-~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
...++...+|.++..... . ..+ ......+....|+|++..++++.+
T Consensus 270 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 556777788876543211 1 111 122234556678888764555544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-12 Score=133.20 Aligned_cols=268 Identities=12% Similarity=0.097 Sum_probs=163.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++|+..+..+ .+.+|+ .+.....+..... .+..++|||||+.|+..+.+...
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLRSS---------WVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECSSS---------CEEEEEECTTSSEEEEEETTCEE
T ss_pred CceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCcceEeecCCc---------cEEEEEECCCCCEEEEEeCCCeE
Confidence 4578899999999998776544 566773 3333322222111 12588999999999988765432
Q ss_pred CCCCccCCCCCCC----CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 177 SKPTFSLGSTKGG----SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
+ .|+....... .....+........|.++ +..+++..+..|.+||+.+++..... ......+..++|+|||+
T Consensus 122 ~--iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 122 S--IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp E--EEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS
T ss_pred E--EEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCC
Confidence 2 2222111100 011112222233445555 45666677889999999988765441 33445688999999998
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
. |+..+ .+..|.++|+ .++. ...+..+...+....|+|||+.|
T Consensus 198 ~----l~sg~---------------~d~~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l 241 (340)
T 1got_B 198 L----FVSGA---------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------TTCSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred E----EEEEe---------------CCCcEEEEEC-----------------CCCeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence 6 66554 2347888887 4444 45566677778999999999998
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+..+.+. .|.+||+.+++.... ... ... ...+..++|+|||+.| ++...++
T Consensus 242 ~s~s~d~-----------~v~iwd~~~~~~~~~----------~~~--~~~-----~~~v~~~~~s~~g~~l-~~g~~d~ 292 (340)
T 1got_B 242 ATGSDDA-----------TCRLFDLRADQELMT----------YSH--DNI-----ICGITSVSFSKSGRLL-LAGYDDF 292 (340)
T ss_dssp EEEETTS-----------CEEEEETTTTEEEEE----------ECC--TTC-----CSCEEEEEECTTSSEE-EEEETTS
T ss_pred EEEcCCC-----------cEEEEECCCCcEEEE----------Ecc--CCc-----ccceEEEEECCCCCEE-EEECCCC
Confidence 8777553 488899876543110 000 000 0124467899999865 4445555
Q ss_pred eeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEE
Q 004149 412 SQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
. +..+|+.+++... +......+....|++++..|+...
T Consensus 293 ~--i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 293 N--CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp E--EEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred e--EEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEc
Confidence 5 4445776766543 433344556667888888766544
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=127.79 Aligned_cols=211 Identities=13% Similarity=0.063 Sum_probs=131.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCC--C-Chhh---hhc-----CCCC-cc--ccchhhH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLG--F-GEEA---LQS-----LPGK-VG--SQDVNDV 600 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~V~~~d~rG~~~--~-g~~~---~~~-----~~~~-~~--~~~~~D~ 600 (771)
.+.||++||.+.+ ...|...+..|++.|| .|+.+|.++.+. + |... .+. ...+ .. ....+++
T Consensus 6 ~~pvvliHG~~~~--~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGYGGS--ERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCTTCC--GGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCC--hhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 4678999996554 5578889999999996 588888775321 0 1000 000 0000 00 1125567
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
.++++++.++. +.+++.|+||||||.+++.++.++|+ +++.+|++++..+....... .... ..+..
T Consensus 84 ~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~--~~~~---~~~~~-- 154 (249)
T 3fle_A 84 KEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNE--NVNE---IIVDK-- 154 (249)
T ss_dssp HHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSS--CTTT---SCBCT--
T ss_pred HHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccC--Ccch---hhhcc--
Confidence 77788887764 45689999999999999999998863 68888888765543211110 0000 00000
Q ss_pred CCcCCCCCC--hhhHHHHhhcCccccccCCCCcEEEEeeC------CCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--C
Q 004149 676 KDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--D 745 (771)
Q Consensus 676 ~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~ 745 (771)
.+.|. ......+... ...+.+.++|+|.|+|+ .|..||...++.+...++......+.+.+.+ +
T Consensus 155 ----~g~p~~~~~~~~~l~~~--~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g~~a 228 (249)
T 3fle_A 155 ----QGKPSRMNAAYRQLLSL--YKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKA 228 (249)
T ss_dssp ----TCCBSSCCHHHHHTGGG--HHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEESGGG
T ss_pred ----cCCCcccCHHHHHHHHH--HhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeCCCC
Confidence 01111 1122222211 23344467899999998 6999999999888777777655666667765 8
Q ss_pred CccCCCCCChHHHHHHHHHHH
Q 004149 746 VHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl 766 (771)
.|..... + .++.+.|..||
T Consensus 229 ~Hs~l~~-n-~~V~~~I~~FL 247 (249)
T 3fle_A 229 QHSQLHE-N-KDVANEIIQFL 247 (249)
T ss_dssp STGGGGG-C-HHHHHHHHHHH
T ss_pred chhcccc-C-HHHHHHHHHHh
Confidence 8986643 3 37888888887
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-11 Score=128.44 Aligned_cols=274 Identities=14% Similarity=0.150 Sum_probs=163.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++||.....+ .+.+| ..++..+.+.... + .+..++|+|||+.|+..+.+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~h~---~------~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHK---L------GISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCCS---S------CEEEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhccCC---C------ceEEEEEcCCCCEEEEECCCCEE
Confidence 4578899999999998876543 45566 2334333332211 1 12689999999999988766533
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+ .|+............+........|.++....+++.....|.+||+.+++..... ......+..+.|+|||+.
T Consensus 90 ~--vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--- 163 (312)
T 4ery_A 90 K--IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSL--- 163 (312)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE---
T ss_pred E--EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCE---
Confidence 2 3332222211122223333345567787666666777889999999988754431 334456788999999996
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecC-CCCccccceeecCCCCEEEEE
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+ ....|.++|+ .+++. ..+. .....+....|+|||++|+..
T Consensus 164 -l~~~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 164 -IVSSS---------------YDGLCRIWDT-----------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred -EEEEe---------------CCCcEEEEEC-----------------CCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 76655 2347888887 44443 3333 333457778999999998877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCCee
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s-~dg~~l~~~~~~~~~~ 413 (771)
+.+ ..|.+||+.+++.... +....... ......|+ ++++ ++++...++..
T Consensus 211 ~~d-----------~~i~iwd~~~~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~~-~l~sg~~dg~i 261 (312)
T 4ery_A 211 TLD-----------NTLKLWDYSKGKCLKT----------YTGHKNEK-------YCIFANFSVTGGK-WIVSGSEDNLV 261 (312)
T ss_dssp ETT-----------TEEEEEETTTTEEEEE----------ECSSCCSS-------SCCCEEEECSSSC-EEEECCTTSCE
T ss_pred cCC-----------CeEEEEECCCCcEEEE----------EEecCCce-------EEEEEEEEeCCCc-EEEEECCCCEE
Confidence 654 3588899877543211 10000000 01122344 4554 55665555554
Q ss_pred EEEEEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEEeCCCC
Q 004149 414 VIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~d~~~l~~~~s~~~~ 456 (771)
..+|+.+++...... ....+....++|+++.++....+.+.
T Consensus 262 --~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 262 --YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp --EEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred --EEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc
Confidence 445787887654443 33345556788888877655433333
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-11 Score=127.80 Aligned_cols=270 Identities=12% Similarity=0.062 Sum_probs=136.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCe-EEEEecCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~ 178 (771)
.....+|||||++|+..... .-.+|.+...++..++..... .|. ...++|||||++ ++|++......
T Consensus 41 ~~~~~a~spdg~~l~~~~~~---~v~~~~~~~~g~~~~~~~~~~--~g~------~~~~~~spdg~~l~~~~~~~~~~~- 108 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK---KWSSFAVKSPTEIVHEASHPI--GGH------PRANDADTNTRAIFLLAAKQPPYA- 108 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT---EEEEEEEEETTEEEEEEEEEC--CSS------GGGGCTTSCCEEEEEEECSSTTCC-
T ss_pred CCcEEEECCCCCEEEEEccc---eEEEEEECCCCCEEEeeEeec--CCC------CccEEECCCCCEEEEEEecCCcce-
Confidence 35678999999988655432 222333322455444333211 111 146899999997 45554411000
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceee-ccCC--CCCCccceEEEecCCCCC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQA-VKGI--PKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~-l~~~--~~~~~~~~~~wspDg~~~ 254 (771)
.|.. +.+. ....+.+|+++ .|+... +... .....+..++|||||+.
T Consensus 109 ------------------------~~~~---~~~~--~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~- 158 (365)
T 1jof_A 109 ------------------------VYAN---PFYK--FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY- 158 (365)
T ss_dssp ------------------------EEEE---EESS--SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-
T ss_pred ------------------------eccc---eeec--CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-
Confidence 0000 0000 12457778776 354432 2101 12345678999999996
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC-CCcceec---C--CCCccccceeecCCC
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-DLPVVNL---T--ESISSAFFPRFSPDG 328 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~l---t--~~~~~~~~p~~SpDG 328 (771)
|++.. . ....|+++++ + +++.+.+ . .........+|||||
T Consensus 159 ---l~~~~-~-------------~~~~v~~~~~-----------------~~~g~~~~~~~~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 159 ---LYSAD-L-------------TANKLWTHRK-----------------LASGEVELVGSVDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp ---EEEEE-T-------------TTTEEEEEEE-----------------CTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred ---EEEEc-C-------------CCCEEEEEEE-----------------CCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence 65443 1 1237888887 4 4554322 1 113346778999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc-----cCCCCCCc-cccCCCE
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY-----SSSILSNP-WLSDGCT 402 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~-----~~~~~~~~-~s~dg~~ 402 (771)
++|+...... +...+|.+|..+++.... . ..+..+.. .+.|.- ......++ |||||++
T Consensus 205 ~~l~v~~~~~--------~~v~v~~~~~~~g~~~~~---~-~~~~~~~~----~~~g~~~~~~~~~~~~~i~~~spdG~~ 268 (365)
T 1jof_A 205 NYLYALMEAG--------NRICEYVIDPATHMPVYT---H-HSFPLIPP----GIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp SEEEEEETTT--------TEEEEEEECTTTCCEEEE---E-EEEESSCT----TCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred CEEEEEECCC--------CeEEEEEEeCCCCcEEEc---c-ceEEcCCC----CcCCcccccccccccccEEEECCCCCE
Confidence 9887665432 122344444434432100 0 00111100 010000 00134578 9999998
Q ss_pred EEEEeeeCC-----eeEEEEEECCCCcEEEe---c-CCCCCceeeEEee---cCCEEEEEEeCCCCCCeEEEEEe
Q 004149 403 MLLSSIWGS-----SQVIISVNVSSGELLRI---T-PAESNFSWSLLTL---DGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 403 l~~~~~~~~-----~~~l~~~d~~tg~~~~l---~-~~~~~~~~~~~s~---d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
|+++....+ ...+|.++. +|+++.+ . ..........++| ||++|++..... ..+.+.+.
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~---~~v~v~~~ 339 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE---GWLEIYRW 339 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS---CEEEEEEE
T ss_pred EEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC---CeEEEEEE
Confidence 876554433 455665543 6777652 1 1222234567899 899877664322 34555554
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=139.21 Aligned_cols=286 Identities=12% Similarity=0.041 Sum_probs=159.9
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.||||++|+-..... ...-...+++++............ .. ......+...+|||||+.++ .+.. + .+.
T Consensus 50 fSpDG~~las~s~d~---~~~wd~~v~~~~~~~~~~~~~~~~-~~-~~~~~~V~~~~~s~d~~~l~-~s~d--g---~v~ 118 (357)
T 4g56_B 50 YRRDGALLLAASSLS---SRTWGGSIWVFKDPEGAPNESLCT-AG-VQTEAGVTDVAWVSEKGILV-ASDS--G---AVE 118 (357)
T ss_dssp ECSSSCEEEEEECSS---SSSCCEEEEEESSCC---CGGGCS-EE-EECSSCEEEEEEETTTEEEE-EETT--S---CEE
T ss_pred ECCCCCEEEEEcCCC---CccccCeEEEEECCCCCcceeEec-cc-CCCCCCEEEEEEcCCCCEEE-EECC--C---EEE
Confidence 368999888654211 111245677766533321111110 00 01114578899999997664 3332 2 244
Q ss_pred Eec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004149 129 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+|+ .++...........| .+.+.+++|||||+.|+..+.+...+ .|+............+......+.|.+
T Consensus 119 lWd~~~~~~~~~~~~~~~~h-----~~~V~~v~~spdg~~l~sgs~dg~v~--iwd~~~~~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEH-----DDIVKTLSVFSDGTQAVSGGKDFSVK--VWDLSQKAVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp EC--------CCCCEEECCC-----SSCEEEEEECSSSSEEEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EeeccccceeEEEeeccCCC-----CCCEEEEEECCCCCEEEEEeCCCeEE--EEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 552 222111111100011 11236899999999999887765433 333222221122222333344556777
Q ss_pred CcCc-ccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 207 DWGE-TYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 207 d~g~-~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
+... .+++..+..|.+||+.+++.... ........+..++|+|++.. ++.++. .+..|.+
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~----~la~g~--------------~d~~i~~ 253 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD----TFACGD--------------ETGNVSL 253 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT----EEEEEE--------------SSSCEEE
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc----eEEEee--------------cccceeE
Confidence 6533 34555668899999988875443 11233445778999999887 766652 2336888
Q ss_pred EecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCE-EEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 285 VRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~-l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
+|+ .+++ ...+......+...+|||||+. |+..+.+ ..|++||+.+++..
T Consensus 254 wd~-----------------~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D-----------~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 254 VNI-----------------KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED-----------CTVAVLDADFSEVF 305 (357)
T ss_dssp EES-----------------SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT-----------SCEEEECTTSCEEE
T ss_pred EEC-----------------CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC-----------CEEEEEECCCCcEe
Confidence 887 4443 4556666777889999999965 5544443 35889998876542
Q ss_pred CCccceeeEEecccccCCCCCcccccCCCCCCcccc-CCCEEEEEeeeCCeeEEEEEE
Q 004149 363 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~l~~~d 419 (771)
.... +...+..++||| |++ ++++...++...+|.++
T Consensus 306 ~~~~--------------------H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 306 RDLS--------------------HRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECC--------------------CSSCEEEEEECSSSTT-EEEEEETTSCEEEEECC
T ss_pred EECC--------------------CCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECC
Confidence 2110 111345778998 676 55677777877777654
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-12 Score=127.54 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=132.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECC--------CCCCCCChhhhhc--
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQS-- 587 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~--------rG~~~~g~~~~~~-- 587 (771)
...+.+.+|.|.+ ..++.|+||.+||+... ..+||+|+.+++ +|+.++|. +...
T Consensus 89 s~~~~~~i~lP~~--~~~p~Pvii~i~~~~~~-------------~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 89 SISFTVTITYPSS--GTAPYPAIIGYGGGSLP-------------APAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEEECCSS--SCSSEEEEEEETTCSSC-------------CCTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eeEEEEEEECCCC--CCCCccEEEEECCCccc-------------cCCCeEEEEecccccccccCCCCcccee-cccccC
Confidence 3568889999984 35788999999985321 257999999986 45545654 3321
Q ss_pred CCCCccccc--hhhHHHHHHHHHHcC--CCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh------
Q 004149 588 LPGKVGSQD--VNDVLTAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------ 657 (771)
Q Consensus 588 ~~~~~~~~~--~~D~~~~i~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------ 657 (771)
....++... .-++.++++||..++ .+|++||+++|||+||..++++++.. ++|+++|..++.++-....
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~G~~~~R~~~~~ 231 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAGGSACWRISDYL 231 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTTTTSCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCCchhhhhhhhhh
Confidence 122344333 358999999999987 89999999999999999999999985 5899999887654321110
Q ss_pred ---cCCC--------CCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCcc---ccccCC-CCcEEEEeeCCCCccCcHH
Q 004149 658 ---GTTD--------IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI---SHISKV-KTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 658 ---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---~~~~~i-~~P~Lii~G~~D~~vp~~~ 722 (771)
+..- ...|+. ..+ ..|... ...-|+ ..+.-+ ..|+|++.| +|..+++..
T Consensus 232 ~~~Ge~v~~~~~~~~e~~Wf~-~~~-----~~y~~~---------~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~g 295 (375)
T 3pic_A 232 KSQGANIQTASEIIGEDPWFS-TTF-----NSYVNQ---------VPVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQS 295 (375)
T ss_dssp HHTTCCCCCHHHHTTTCSCSC-GGG-----GGTTTC---------GGGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHHH
T ss_pred cccCccccccccccCcccccc-cch-----hhhccc---------ccccCcCHHHHHHHhCCceEEEecC-CCcccCcHH
Confidence 1000 001110 000 000000 000111 112222 257999999 999998876
Q ss_pred HHHHHHHH----HhCCC--CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 723 GLQYARAL----REKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 723 ~~~~~~~l----~~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
....+..+ +..|. ++.+....+.+|+.. +. +..+.+.+||+++|+
T Consensus 296 ~~~~~~~a~~VY~~lG~~d~~~~~~~ggH~Hc~f-p~---~~~~~~~~F~~k~L~ 346 (375)
T 3pic_A 296 CFGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAF-PS---NQQSQLTAFVQKFLL 346 (375)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEEECCSCCSTTCC-CG---GGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCccceEEEeeCCCccccC-CH---HHHHHHHHHHHHHhC
Confidence 55444433 33454 466644333345322 22 234789999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.2e-12 Score=131.70 Aligned_cols=229 Identities=12% Similarity=0.093 Sum_probs=140.7
Q ss_pred hcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCC
Q 004149 66 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQ 143 (771)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 143 (771)
......+.|.+|++..... ...+. ..+......+...+|||||++||..+..+ .+.+|+ .++..+....
T Consensus 97 ~~~s~dg~v~lWd~~~~~~-~~~~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~-----~i~iwd~~~~~~~~~~~~-- 167 (344)
T 4gqb_B 97 LVASDSGAVELWELDENET-LIVSK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDI-----CIKVWDLAQQVVLSSYRA-- 167 (344)
T ss_dssp EEEETTSEEEEEEECTTSS-CEEEE-EEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC--
T ss_pred EEEECCCEEEEEeccCCCc-eeEee-ccccCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC--
Confidence 3344556778888754422 11111 00011224588999999999998876543 466663 3333222221
Q ss_pred cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEE
Q 004149 144 TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVI 223 (771)
Q Consensus 144 ~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~ 223 (771)
..+. +.++.|+||++.++..+. .+..|.+|
T Consensus 168 -h~~~------V~~~~~~~~~~~~l~s~s-------------------------------------------~D~~v~iw 197 (344)
T 4gqb_B 168 -HAAQ------VTCVAASPHKDSVFLSCS-------------------------------------------EDNRILLW 197 (344)
T ss_dssp -CSSC------EEEEEECSSCTTEEEEEE-------------------------------------------TTSCEEEE
T ss_pred -cCCc------eEEEEecCCCCCceeeec-------------------------------------------cccccccc
Confidence 1112 268999999976654422 22578999
Q ss_pred EccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004149 224 NINSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 224 d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
|+.+++.... ........+..++|+|++.. ++.++. .+..|.++|+
T Consensus 198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~l~sg~--------------~dg~v~~wd~--------------- 244 (344)
T 4gqb_B 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSE----VFVFGD--------------ENGTVSLVDT--------------- 244 (344)
T ss_dssp ETTSSSCEEECC----CCCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEES---------------
T ss_pred cccccceeeeeecceeeccceeeeecCCCCc----ceEEec--------------cCCcEEEEEC---------------
Confidence 9998876543 11122335678899998877 766552 2347888897
Q ss_pred CCCCCc-ceecCCCCccccceeecCCCCE-EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCC
Q 004149 303 SSEDLP-VVNLTESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 380 (771)
Q Consensus 303 ~~~~~~-~~~lt~~~~~~~~p~~SpDG~~-l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (771)
.+++ ...+..+...+...+|||||.. |+..+.+ ..|.+||+.+++...+..
T Consensus 245 --~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D-----------~~i~vwd~~~~~~~~~~~-------------- 297 (344)
T 4gqb_B 245 --KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED-----------CSLAVLDSSLSELFRSQA-------------- 297 (344)
T ss_dssp --CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT-----------SCEEEECTTCCEEEEECC--------------
T ss_pred --CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC-----------CeEEEEECCCCcEEEEcC--------------
Confidence 4444 4567777778899999999965 5555544 348889987765321110
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 381 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 381 ~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
+...+..++|+||++.|+++...++...+|.++
T Consensus 298 ------H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 298 ------HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ------CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 112355788999999888888888887777554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-11 Score=128.31 Aligned_cols=245 Identities=13% Similarity=0.134 Sum_probs=150.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++|+.....+ .+.+| ..++....+.... + .+.+++|+|||+.|+..+.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~h~---~------~v~~~~~~~~~~~l~s~~~---- 94 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDS-----SASVWYSLNGERLGTLDGHT---G------TIWSIDVDCFTKYCVTGSA---- 94 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSS-----CEEEEETTTCCEEEEECCCS---S------CEEEEEECTTSSEEEEEET----
T ss_pred ceEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCchhhhhhhhcC---C------cEEEEEEcCCCCEEEEEeC----
Confidence 4588899999999998775443 34555 3333333332111 1 1268999999999987643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+..|.+||+.+++.... ......+..+.|+|||+.
T Consensus 95 ----------------------------------------dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~--- 129 (369)
T 3zwl_B 95 ----------------------------------------DYSIKLWDVSNGQCVAT--WKSPVPVKRVEFSPCGNY--- 129 (369)
T ss_dssp ----------------------------------------TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSSE---
T ss_pred ----------------------------------------CCeEEEEECCCCcEEEE--eecCCCeEEEEEccCCCE---
Confidence 25799999998887666 345557889999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc--cccceeecCCCCEEEEE
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~p~~SpDG~~l~f~ 334 (771)
|+..+.... .....|.++|+.... ...... .........+..... .+....|+|||+.|+..
T Consensus 130 -l~~~~~~~~----------~~~g~i~~~d~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 130 -FLAILDNVM----------KNPGSINIYEIERDS----ATHELT-KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp -EEEEECCBT----------TBCCEEEEEEEEECT----TTCCEE-EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred -EEEecCCcc----------CCCCEEEEEEecCCc----cceeec-ccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 777652200 112366677662110 000000 000112222223333 67889999999998876
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
+.+ ..|++||+.++... ...+.. ....+..++|+||++.|+.. ..++ .
T Consensus 194 ~~d-----------g~i~i~d~~~~~~~---------~~~~~~---------~~~~v~~~~~~~~~~~l~~~-~~d~--~ 241 (369)
T 3zwl_B 194 HKD-----------GKISKYDVSNNYEY---------VDSIDL---------HEKSISDMQFSPDLTYFITS-SRDT--N 241 (369)
T ss_dssp ETT-----------SEEEEEETTTTTEE---------EEEEEC---------CSSCEEEEEECTTSSEEEEE-ETTS--E
T ss_pred cCC-----------CEEEEEECCCCcEe---------EEEEec---------CCCceeEEEECCCCCEEEEe-cCCc--e
Confidence 654 35889998763211 111100 01134567899999876544 4344 4
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCC
Q 004149 415 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~ 454 (771)
|..+|+.+++...............++++++.+++.....
T Consensus 242 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred EEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 6666888888776655555566778999999888776543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.7e-11 Score=125.13 Aligned_cols=275 Identities=11% Similarity=0.109 Sum_probs=164.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++|+..+..+ .+.+|+ .++....+..... ++..++|||||+.|+..+.+...
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~h~~---------~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKLHCP---------WVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECCCT---------TCCCCEECTTSSEEEECCSSSCC
T ss_pred cEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEecCCC---------CEEEEEECCCCCEEEEeeCCCcE
Confidence 4588899999999998776554 677774 3333333322111 22688999999999987766543
Q ss_pred CCCCccCCCC-------CCCCCCccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccC----CCCCCccce
Q 004149 177 SKPTFSLGST-------KGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKG----IPKSLSVGQ 244 (771)
Q Consensus 177 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~----~~~~~~~~~ 244 (771)
+ .|+.... +.......+........|.++.+ ..+++..+..|.+||+.+++...... ......+..
T Consensus 133 ~--iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 133 S--IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp E--EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred E--EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 3 2322111 11112233444455566777644 35566678899999999987655421 112335667
Q ss_pred EEEec-CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCCccccce
Q 004149 245 VVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFP 322 (771)
Q Consensus 245 ~~wsp-Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p 322 (771)
+.|+| ++.. |+..+ .+..|.++|+. .+ .....+..+...+...
T Consensus 211 ~~~~~~~~~~----l~sgs---------------~D~~v~~wd~~----------------~~~~~~~~~~~h~~~v~~v 255 (380)
T 3iz6_a 211 LSINSLNANM----FISGS---------------CDTTVRLWDLR----------------ITSRAVRTYHGHEGDINSV 255 (380)
T ss_dssp EEECSSSCCE----EEEEE---------------TTSCEEEEETT----------------TTCCCCEEECCCSSCCCEE
T ss_pred EEeecCCCCE----EEEEE---------------CCCeEEEEECC----------------CCCcceEEECCcCCCeEEE
Confidence 88877 6654 44443 23468888872 12 2345566677789999
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
.|+|||+.|+..+.+. .|.+||+.++.......... ....... ..+..++|+|||+.
T Consensus 256 ~~~p~~~~l~s~s~D~-----------~i~lwd~~~~~~~~~~~~~~-------~~~~~~~-----~~v~~~~~s~~g~~ 312 (380)
T 3iz6_a 256 KFFPDGQRFGTGSDDG-----------TCRLFDMRTGHQLQVYNREP-------DRNDNEL-----PIVTSVAFSISGRL 312 (380)
T ss_dssp EECTTSSEEEEECSSS-----------CEEEEETTTTEEEEEECCCC-------SSSCCSS-----CSCSEEEECSSSSE
T ss_pred EEecCCCeEEEEcCCC-----------eEEEEECCCCcEEEEecccc-------ccccccc-----CceEEEEECCCCCE
Confidence 9999999988777653 48899988765422110000 0000001 12456789999996
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEE-ec----CCCCCceeeEEeecCCEEEEE
Q 004149 403 MLLSSIWGSSQVIISVNVSSGELLR-IT----PAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~-l~----~~~~~~~~~~~s~d~~~l~~~ 450 (771)
|+ +...++. ++.+|+.+++... +. .....+....|++||+.|+..
T Consensus 313 l~-~g~~dg~--i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 313 LF-AGYSNGD--CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp EE-EECTTSC--EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred EE-EEECCCC--EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence 64 4444444 5555877776543 31 222345667899999876543
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-12 Score=131.13 Aligned_cols=214 Identities=12% Similarity=0.052 Sum_probs=123.1
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~ 613 (771)
+..|.||++||.........|...+..| ..||.|+++|+|| +|.+.. ....++++.+. ++.+.+. .
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G---~G~~~~-------~~~~~~~~~~~~~~~l~~~--~ 145 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPG---FHGGQA-------LPATLTVLVRSLADVVQAE--V 145 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTT---SSTTCC-------EESSHHHHHHHHHHHHHHH--H
T ss_pred CCCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh--c
Confidence 3468899999942222245788888888 7899999999999 443211 01123333322 2223222 1
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhC---CCceeEEEecCCccchhhhhcCCCCCcch--hhhhccCCCCCcCCCCCC-hhh
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPS-VED 687 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 687 (771)
+.+++.|+||||||.+++.++.++ |+.++++|+.++....... .....+. +....... ...+..... ...
T Consensus 146 ~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 221 (319)
T 3lcr_A 146 ADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDG---GRPEELFRSALNERFVE-YLRLTGGGNLSQR 221 (319)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSC---CHHHHHHHHHHHHHHHH-HHHHHCCCCHHHH
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccc---hhhHHHHHHHHHHHHhh-hhcccCCCchhHH
Confidence 236899999999999999999887 8889999988765321100 0000000 00000000 000000000 011
Q ss_pred ---HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004149 688 ---LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 688 ---~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
...+...........+++|+|+++|++ ..+++.....+.+.+.. .++++.+++..|.+..++...++.+.|.+
T Consensus 222 l~~~~~~~~~~~~~~~~~i~~PvLli~g~~-~~~~~~~~~~~~~~~~~---~~~~~~~~g~H~~~~~~~~~~~va~~i~~ 297 (319)
T 3lcr_A 222 ITAQVWCLELLRGWRPEGLTAPTLYVRPAQ-PLVEQEKPEWRGDVLAA---MGQVVEAPGDHFTIIEGEHVASTAHIVGD 297 (319)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSCEEEEEESS-CSSSCCCTHHHHHHHHT---CSEEEEESSCTTGGGSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCEEEEEeCC-CCCCcccchhhhhcCCC---CceEEEeCCCcHHhhCcccHHHHHHHHHH
Confidence 111111111122357899999999998 56666777777776654 36788888744444444677789999999
Q ss_pred HHHHH
Q 004149 765 WFKKY 769 (771)
Q Consensus 765 wl~~~ 769 (771)
||++.
T Consensus 298 fL~~~ 302 (319)
T 3lcr_A 298 WLREA 302 (319)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99865
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=130.17 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=126.4
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||+.++..... ..+.+++|++... .....+. .. +.+...+|||||++|+..++.. +..+
T Consensus 142 SpDg~~la~as~~-------~d~~i~iwd~~~~-~~~~~~~-~~-----~~V~~v~fspdg~~l~s~s~~~-----~~~~ 202 (365)
T 4h5i_A 142 SREGTVAAIASSK-------VPAIMRIIDPSDL-TEKFEIE-TR-----GEVKDLHFSTDGKVVAYITGSS-----LEVI 202 (365)
T ss_dssp CTTSSCEEEEESC-------SSCEEEEEETTTT-EEEEEEE-CS-----SCCCEEEECTTSSEEEEECSSC-----EEEE
T ss_pred cCCCCEEEEEECC-------CCCEEEEeECCCC-cEEEEeC-CC-----CceEEEEEccCCceEEecccee-----EEEE
Confidence 6788887765432 3356777776332 1112221 21 4578899999999999876433 5666
Q ss_pred e-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004149 130 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 130 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
| ..+...... ...... ..+..++|||||+.|+..+.+..
T Consensus 203 ~~~~~~~~~~~-~~~~~~------~~v~~v~fspdg~~l~~~s~d~~--------------------------------- 242 (365)
T 4h5i_A 203 STVTGSCIARK-TDFDKN------WSLSKINFIADDTVLIAASLKKG--------------------------------- 242 (365)
T ss_dssp ETTTCCEEEEE-CCCCTT------EEEEEEEEEETTEEEEEEEESSS---------------------------------
T ss_pred EeccCcceeee-ecCCCC------CCEEEEEEcCCCCEEEEEecCCc---------------------------------
Confidence 6 333322211 111111 12368999999999998765431
Q ss_pred CcccCCccCceEEEEEccCCceeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004149 209 GETYAGKRQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
....++.|++..+....+. -......+..++|||||+. |+..+ .+..|.++
T Consensus 243 -------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~----lasgs---------------~D~~V~iw 296 (365)
T 4h5i_A 243 -------KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL----AVLAS---------------NDNSIALV 296 (365)
T ss_dssp -------CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE----EEEEE---------------TTSCEEEE
T ss_pred -------ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc----eEEEc---------------CCCEEEEE
Confidence 2246788888766543220 0233346788999999997 77765 23478889
Q ss_pred ecccccchhhhhhhhcCCCCCCcc-ee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 286 RVSLYKSEASELELKESSSEDLPV-VN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~-~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|+ .+++. .. +..+...+.+.+|||||++||-.+.+. .|.+|++..+
T Consensus 297 d~-----------------~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-----------tvrvw~ip~~ 344 (365)
T 4h5i_A 297 KL-----------------KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN-----------TIHIIKLPLN 344 (365)
T ss_dssp ET-----------------TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS-----------EEEEEECCTT
T ss_pred EC-----------------CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC-----------eEEEEEcCCC
Confidence 98 66654 33 456777899999999999999888764 4788887643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.7e-12 Score=136.16 Aligned_cols=206 Identities=12% Similarity=0.025 Sum_probs=134.1
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
...|.++....+.+.....|++||+.+++..... ......+..++|+|||+. +++++. ...
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----l~~~~~--------------~~~ 234 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDL----VYCSNW--------------ISE 234 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTE----EEEEET--------------TTT
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCE----EEEEec--------------CCC
Confidence 3456665433344455689999999988765441 233446778999999997 666542 233
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.|+++|+ .+++..........+....|+|||+.|+......... ......|+++|+.+++
T Consensus 235 ~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~---~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 235 DISVIDR-----------------KTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ---ESGGGRLGIYSMDKEK 294 (433)
T ss_dssp EEEEEET-----------------TTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT---CSCCEEEEEEETTTTE
T ss_pred cEEEEEC-----------------CCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc---ccCCCeEEEEECCCCc
Confidence 7999998 5666554444455688899999999998877543100 0123579999988765
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEE
Q 004149 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL 440 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~ 440 (771)
........ ..+..++|+|||+.|+++...++ .++.+|+.+++...............+
T Consensus 295 ~~~~~~~~--------------------~~~~~~~~~~~g~~l~~~~~~~~--~v~v~d~~~~~~~~~~~~~~~~~~~~~ 352 (433)
T 3bws_A 295 LIDTIGPP--------------------GNKRHIVSGNTENKIYVSDMCCS--KIEVYDLKEKKVQKSIPVFDKPNTIAL 352 (433)
T ss_dssp EEEEEEEE--------------------ECEEEEEECSSTTEEEEEETTTT--EEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEeeccCC--------------------CCcceEEECCCCCEEEEEecCCC--EEEEEECCCCcEEEEecCCCCCCeEEE
Confidence 32211000 02335689999998888765554 566678888877655544444566789
Q ss_pred eecCCEEEEEEeCCCCC-----------CeEEEEEecc
Q 004149 441 TLDGDNIIAVSSSPVDV-----------PQVKYGYFVD 467 (771)
Q Consensus 441 s~d~~~l~~~~s~~~~p-----------~~l~~~~~~~ 467 (771)
+++++.+++........ ..+++.++.+
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 99999888877654433 3677766543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.2e-12 Score=134.93 Aligned_cols=278 Identities=8% Similarity=-0.006 Sum_probs=159.7
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc
Q 004149 55 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 134 (771)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~ 134 (771)
.++|+.+..-+......+.++++++.... ..+..... .......|+|||++||.....+ .+.+|+-..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 128 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRD--GSKMLKRA-----DYTAVDTAKLQMRRFILGTTEG-----DIKVLDSNF 128 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEE--TTTTSCSC-----CEEEEEEECSSSCEEEEEETTS-----CEEEECTTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccc--eeeEEecC-----CceEEEEEecCCCEEEEEECCC-----CEEEEeCCC
Confidence 45666666666655566778887764332 11111111 2345567999999998876543 455663222
Q ss_pred ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCC
Q 004149 135 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAG 214 (771)
Q Consensus 135 ~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~ 214 (771)
....... ....+ .+.+++|+|||+.|+..+.
T Consensus 129 ~~~~~~~-~~h~~------~v~~~~~~~~~~~l~s~s~------------------------------------------ 159 (420)
T 3vl1_A 129 NLQREID-QAHVS------EITKLKFFPSGEALISSSQ------------------------------------------ 159 (420)
T ss_dssp CEEEEET-TSSSS------CEEEEEECTTSSEEEEEET------------------------------------------
T ss_pred cceeeec-ccccC------ccEEEEECCCCCEEEEEeC------------------------------------------
Confidence 2222221 11111 2368999999998887643
Q ss_pred ccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 215 KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 215 ~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
...|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 160 --d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l~s~~---------------~d~~v~iwd~------- 210 (420)
T 3vl1_A 160 --DMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRN----VLSAS---------------LDGTIRLWEC------- 210 (420)
T ss_dssp --TSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTE----EEEEE---------------TTSCEEEEET-------
T ss_pred --CCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCE----EEEEc---------------CCCcEEEeEC-------
Confidence 257999999877654331 334556889999999997 77665 2235667776
Q ss_pred hhhhhhcCCCCCCcc-eecCC------------------------CCccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004149 295 SELELKESSSEDLPV-VNLTE------------------------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~------------------------~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
.+++. ..+.. ....+..+.|||||+.|+..+.+.
T Consensus 211 ----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----------- 269 (420)
T 3vl1_A 211 ----------GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG----------- 269 (420)
T ss_dssp ----------TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----------
T ss_pred ----------CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-----------
Confidence 32222 11211 124466788999999988766553
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc--EEE
Q 004149 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLR 427 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~--~~~ 427 (771)
.|.+||+.+++.... +.. .+...+..++|+|+++.++++...++. |..+|+.+++ +..
T Consensus 270 ~i~i~d~~~~~~~~~---------~~~---------~~~~~v~~~~~~~~~~~~l~~g~~dg~--i~vwd~~~~~~~~~~ 329 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQ---------LPS---------KFTCSCNSLTVDGNNANYIYAGYENGM--LAQWDLRSPECPVGE 329 (420)
T ss_dssp CEEEEETTTCCEEEE---------ECC---------TTSSCEEEEEECSSCTTEEEEEETTSE--EEEEETTCTTSCSEE
T ss_pred eEEEEECCCCceeEE---------ccc---------ccCCCceeEEEeCCCCCEEEEEeCCCe--EEEEEcCCCcCchhh
Confidence 488999877553111 000 011134577899999855566665655 4455777664 445
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 428 l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
+...........++++++.|+ +.+ .+ ..+.+.++..
T Consensus 330 ~~~~~~~~v~~~~~~~~~~l~-s~~-~d--~~v~iw~~~~ 365 (420)
T 3vl1_A 330 FLINEGTPINNVYFAAGALFV-SSG-FD--TSIKLDIISD 365 (420)
T ss_dssp EEESTTSCEEEEEEETTEEEE-EET-TT--EEEEEEEECC
T ss_pred hhccCCCCceEEEeCCCCEEE-Eec-CC--ccEEEEeccC
Confidence 544233223344666665433 332 22 3455555543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-11 Score=128.78 Aligned_cols=269 Identities=13% Similarity=0.087 Sum_probs=165.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++||..+..+ .+.+|+ .+.....+..... ++..++|||||+.|+..+.+...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~~~---------~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTMPCT---------WVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECSSS---------CCCEEEECTTSSEEEEESTTSEE
T ss_pred CeEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCcceEEecCCC---------CEEEEEECCCCCEEEEeeCCCCE
Confidence 4588899999999998776554 677774 2333333332211 23689999999999987655432
Q ss_pred CCCCccCCCCCC------CCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004149 177 SKPTFSLGSTKG------GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 177 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
. .|....... ......+........|.++....+++..+..|.+||+.+++..... ......+..+.|+|+
T Consensus 131 ~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 131 S--VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPS 207 (354)
T ss_dssp E--EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCC
T ss_pred E--EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeC
Confidence 1 121111100 0111123333345567887666777778899999999988765431 223345667788774
Q ss_pred --CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCC
Q 004149 251 --NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 251 --g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpD 327 (771)
|+. |+..+ .+..|.++|+ .+++ ...+..+...+...+|+||
T Consensus 208 ~~g~~----l~sgs---------------~Dg~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~ 251 (354)
T 2pbi_B 208 ETGNT----FVSGG---------------CDKKAMVWDM-----------------RSGQCVQAFETHESDVNSVRYYPS 251 (354)
T ss_dssp SSCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEeCC
Confidence 554 55444 3347888898 5554 3455666777899999999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
|+.|+..+.+. .|.+||+.++..... ... ... ......++|+|||+.| ++.
T Consensus 252 ~~~l~s~s~D~-----------~v~lwd~~~~~~~~~----------~~~--~~~-----~~~~~~~~~s~~g~~l-~~g 302 (354)
T 2pbi_B 252 GDAFASGSDDA-----------TCRLYDLRADREVAI----------YSK--ESI-----IFGASSVDFSLSGRLL-FAG 302 (354)
T ss_dssp SSEEEEEETTS-----------CEEEEETTTTEEEEE----------ECC--TTC-----CSCEEEEEECTTSSEE-EEE
T ss_pred CCEEEEEeCCC-----------eEEEEECCCCcEEEE----------EcC--CCc-----ccceeEEEEeCCCCEE-EEE
Confidence 99988777653 488889876532111 000 000 0023457899999855 455
Q ss_pred eeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEE
Q 004149 408 IWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
..++...+| |+.+++.. .+......+....|+||++.|+...
T Consensus 303 ~~d~~i~vw--d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 303 YNDYTINVW--DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp ETTSCEEEE--ETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred ECCCcEEEE--ECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 555555555 77677644 4444444566678999998776554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-11 Score=131.27 Aligned_cols=264 Identities=16% Similarity=0.082 Sum_probs=148.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCccc---------ccccCCCcccceeecCCCCeEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH---------GSVYADGWFEGISWNSDETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~wSpDg~~la~ 169 (771)
..+...+|||||++||...+ +..++|.+ ..++....+....... ...-.+..+.+++|||||+.|+.
T Consensus 65 ~~V~~v~fspdg~~la~g~~---~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGCN---KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp SCCCEEEECTTSSEEEEECB---SCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CEEEEEEECCCCCEEEEEcC---CcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 44778999999999987643 22222222 2333322221110000 00001113468999999999998
Q ss_pred EecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec
Q 004149 170 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 249 (771)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp 249 (771)
.+.+...+ .|+............+......+.|.++....+++..+..|.+||+.+++.... ......+..++|+|
T Consensus 141 ~~~d~~i~--iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~ 216 (393)
T 1erj_A 141 GAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAVSP 216 (393)
T ss_dssp EETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECS
T ss_pred EcCCCeEE--EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE--EEcCCCcEEEEEEC
Confidence 87765433 343322221122223344445677888876777777789999999999876554 33444677889999
Q ss_pred -CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eec-------CCCCcccc
Q 004149 250 -LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL-------TESISSAF 320 (771)
Q Consensus 250 -Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l-------t~~~~~~~ 320 (771)
||+. |+..+ .+..|.++|+ .++.. ..+ ..+...+.
T Consensus 217 ~~~~~----l~~~s---------------~d~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~h~~~v~ 260 (393)
T 1erj_A 217 GDGKY----IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDSVY 260 (393)
T ss_dssp TTCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSSCEE
T ss_pred CCCCE----EEEEc---------------CCCcEEEEEC-----------------CCCcEEEeecccccCCCCCCCCEE
Confidence 7776 66554 2336777787 44432 233 33455688
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce--eeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI--VDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
+..|+|||+.|+..+.+. .|.+||+.+.......... ......+ .+ +...+..++|++
T Consensus 261 ~v~~~~~g~~l~s~s~d~-----------~v~~wd~~~~~~~~~~~~~~~~~~~~~~--------~~-h~~~v~~~~~~~ 320 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSLDR-----------SVKLWNLQNANNKSDSKTPNSGTCEVTY--------IG-HKDFVLSVATTQ 320 (393)
T ss_dssp EEEECTTSSEEEEEETTS-----------EEEEEEC---------------CEEEEE--------EC-CSSCEEEEEECG
T ss_pred EEEECCCCCEEEEEeCCC-----------EEEEEECCCCCCcccccCCCCCcceEEE--------ec-ccCcEEEEEECC
Confidence 999999999988766553 5888888664432110000 0000000 00 111244678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
|++.| ++...++. +..+|+.+++.....
T Consensus 321 ~~~~l-~sgs~D~~--v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 321 NDEYI-LSGSKDRG--VLFWDKKSGNPLLML 348 (393)
T ss_dssp GGCEE-EEEETTSE--EEEEETTTCCEEEEE
T ss_pred CCCEE-EEEeCCCe--EEEEECCCCeEEEEE
Confidence 99865 45555554 555588888765443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-10 Score=121.82 Aligned_cols=274 Identities=9% Similarity=0.024 Sum_probs=157.3
Q ss_pred eeEEEEEEeecCCCCccceeecCCccccccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCccccc
Q 004149 71 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 148 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 148 (771)
.+.+.+|++.... ....+.. ......+...+||| +++.|+...... .+.+| ..+...+.........
T Consensus 95 dg~i~iwd~~~~~-~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~-- 163 (383)
T 3ei3_B 95 GGDIILWDYDVQN-KTSFIQG---MGPGDAITGMKFNQFNTNQLFVSSIRG-----ATTLRDFSGSVIQVFAKTDSWD-- 163 (383)
T ss_dssp TSCEEEEETTSTT-CEEEECC---CSTTCBEEEEEEETTEEEEEEEEETTT-----EEEEEETTSCEEEEEECCCCSS--
T ss_pred CCeEEEEeCCCcc-cceeeec---CCcCCceeEEEeCCCCCCEEEEEeCCC-----EEEEEECCCCceEEEeccCCCC--
Confidence 3567777764332 1112211 11225688999999 677777665433 45566 3333333332222111
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004149 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
..+.+++|+|||+.|+..+. ...|++||+.+.
T Consensus 164 ----~~v~~~~~~~~~~~l~~~~~--------------------------------------------d~~i~i~d~~~~ 195 (383)
T 3ei3_B 164 ----YWYCCVDVSVSRQMLATGDS--------------------------------------------TGRLLLLGLDGH 195 (383)
T ss_dssp ----CCEEEEEEETTTTEEEEEET--------------------------------------------TSEEEEEETTSC
T ss_pred ----CCeEEEEECCCCCEEEEECC--------------------------------------------CCCEEEEECCCC
Confidence 12368999999998887643 368999999766
Q ss_pred ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004149 229 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
....+ ......+..++|+|+++. +++++. .+..|.++|+... ...+.
T Consensus 196 ~~~~~--~~h~~~v~~~~~~~~~~~----~l~s~~--------------~d~~i~iwd~~~~-------------~~~~~ 242 (383)
T 3ei3_B 196 EIFKE--KLHKAKVTHAEFNPRCDW----LMATSS--------------VDATVKLWDLRNI-------------KDKNS 242 (383)
T ss_dssp EEEEE--ECSSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEEGGGC-------------CSTTC
T ss_pred EEEEe--ccCCCcEEEEEECCCCCC----EEEEEe--------------CCCEEEEEeCCCC-------------Ccccc
Confidence 66666 344557889999999996 655552 3347888887210 00133
Q ss_pred ceecCCCCccccceeecC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004149 309 VVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 309 ~~~lt~~~~~~~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
......+...+.++.|+| ||+.|+..+.+ ..|.+||+.+++.......... ..+. +
T Consensus 243 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~----------~~~~--~ 299 (383)
T 3ei3_B 243 YIAEMPHEKPVNAAYFNPTDSTKLLTTDQR-----------NEIRVYSSYDWSKPDQIIIHPH----------RQFQ--H 299 (383)
T ss_dssp EEEEEECSSCEEEEEECTTTSCEEEEEESS-----------SEEEEEETTBTTSCSEEEECCB----------CCCT--T
T ss_pred eEEEecCCCceEEEEEcCCCCCEEEEEcCC-----------CcEEEEECCCCccccccccccc----------cccc--c
Confidence 333335666789999999 99999877754 3589999887665322111100 0000 0
Q ss_pred cCCCCCCccccCCCEEEEEeee------CCeeEEEEEECCCCcEEEecCC---CCCceeeEEeecCCEEEEEEeCCCCCC
Q 004149 388 SSSILSNPWLSDGCTMLLSSIW------GSSQVIISVNVSSGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 388 ~~~~~~~~~s~dg~~l~~~~~~------~~~~~l~~~d~~tg~~~~l~~~---~~~~~~~~~s~d~~~l~~~~s~~~~p~ 458 (771)
. ..-...|+|++..+.+.... .....|..+|+.+++....... ........|+++++.|+.. + + .
T Consensus 300 ~-~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s--d--~ 373 (383)
T 3ei3_B 300 L-TPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-M--G--F 373 (383)
T ss_dssp S-CCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-E--T--T
T ss_pred c-cceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe-c--C--C
Confidence 0 11123566666644433221 1233466668888876544332 2334445899999977655 3 2 4
Q ss_pred eEEEEEe
Q 004149 459 QVKYGYF 465 (771)
Q Consensus 459 ~l~~~~~ 465 (771)
.|.+.++
T Consensus 374 ~i~iw~~ 380 (383)
T 3ei3_B 374 NILIWNR 380 (383)
T ss_dssp EEEEEEC
T ss_pred cEEEEec
Confidence 4666554
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=130.33 Aligned_cols=227 Identities=11% Similarity=0.080 Sum_probs=134.2
Q ss_pred CCceEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCC--CCC---C----
Q 004149 517 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYR--GSL---G---- 579 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~-----~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~r--G~~---~---- 579 (771)
-|.++...+|.|+++. ..+++|+|+++||.+.+ ...|.. ..+.+.+.|..+++++.. +.. +
T Consensus 24 l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~~~~~~~~~~ 101 (299)
T 4fol_A 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp TSSEEEEEEEECGGGGCC------CBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEEECSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCC--hHHHHHhchHhHHHHHcCchhhccCCCcceeecCCCcccc
Confidence 3667888999998763 35789999999996654 223432 334567789999999852 110 0
Q ss_pred --CC--hhhhhcC-------CCCccccchhhHHHHHHHHHHcCC-------CCCCeEEEEEcChhHHHHHHHHHhC--CC
Q 004149 580 --FG--EEALQSL-------PGKVGSQDVNDVLTAIDHVIDMGL-------ANPSKVTVVGGSHGGFLTTHLIGQA--PD 639 (771)
Q Consensus 580 --~g--~~~~~~~-------~~~~~~~~~~D~~~~i~~l~~~~~-------~d~~ri~l~G~S~GG~~a~~~a~~~--p~ 639 (771)
.| ..+.... ...+...-.+++... +.++.. .+.++.+|.|+||||+.|+.++.++ |+
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~---i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al~~~~~~ 178 (299)
T 4fol_A 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQT---LDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLKGYSGK 178 (299)
T ss_dssp SSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHH---HHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHHHTGGGT
T ss_pred cccccCCccccccccCccccCccHHHHHHHHhHHH---HHHhcccccccccccccceEEEecCchHHHHHHHHHhCCCCC
Confidence 00 0000000 000111112334333 333322 2456899999999999999999985 67
Q ss_pred ceeEEEecCCccchhhhhcCCCCCcchh---hhhccCCCCCcCCCCCChhhHHHHhhcCccccc---cCC-CCcEEEEee
Q 004149 640 KFVAAAARNPLCNLALMVGTTDIPDWCY---VESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---SKV-KTPTIFLLG 712 (771)
Q Consensus 640 ~~~a~v~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---~~i-~~P~Lii~G 712 (771)
.++++.+.+|.++.... .|.. ...++. +...+...++...+ .+. ..+++|-+|
T Consensus 179 ~~~~~~s~s~~~~p~~~-------~~~~~~~~~~~g~-------------~~~~~~~~d~~~l~~~~~~~~~~~i~id~G 238 (299)
T 4fol_A 179 RYKSCSAFAPIVNPSNV-------PWGQKAFKGYLGE-------------EKAQWEAYDPCLLIKNIRHVGDDRILIHVG 238 (299)
T ss_dssp CCSEEEEESCCCCGGGS-------HHHHHHHHHHTC------------------CGGGCHHHHGGGSCCCTTCCEEEEEE
T ss_pred ceEEEEecccccCcccc-------ccccccccccccc-------------chhhhhhcCHHHHHHhcccCCCCceEEEec
Confidence 88999999998764321 1110 011111 11122233333322 222 357999999
Q ss_pred CCCCccCcH-HHHHHHHHHHhCCCC--EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 713 AQDLRVPVS-NGLQYARALREKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 713 ~~D~~vp~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+.|.+.... ..+.|.++++++|.+ +++...||.+|.+.- ...+++.-+.|..++|+
T Consensus 239 ~~D~f~~~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f---~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 239 DSDPFLEEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TTCTTHHHHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred CCCcchhhhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH---HHHHHHHHHHHHHHhcC
Confidence 999886321 135688899888876 788899998997531 23456777888888875
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=125.89 Aligned_cols=215 Identities=15% Similarity=0.091 Sum_probs=130.9
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECC--------CCCCCCChhhhhcC--
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQSL-- 588 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~--------rG~~~~g~~~~~~~-- 588 (771)
..+.+.+|.|+ +.++.|+||.+||+.. ...+||+|+.+++ +|+.++|. +....
T Consensus 123 ~sf~~~i~lP~---g~~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~ 185 (433)
T 4g4g_A 123 ISFSASIRKPS---GAGPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGR 185 (433)
T ss_dssp EEEEEEEECCS---SSCCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEEECCC---CCCCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc-cccccCC
Confidence 45789999997 4578999999997421 0357999999997 34445555 43221
Q ss_pred CCCccccc--hhhHHHHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh-----
Q 004149 589 PGKVGSQD--VNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----- 657 (771)
Q Consensus 589 ~~~~~~~~--~~D~~~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~----- 657 (771)
...++... .-++.+++++|.. ++.+|++||+++|||+||..++++++.. ++|+++|..++.++-....
T Consensus 186 ~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~G~~~~R~~~~ 264 (433)
T 4g4g_A 186 DHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAGGAACWRISDQ 264 (433)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTTTTSCHHHHHH
T ss_pred ccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCCchhhhhhchh
Confidence 12333322 3588999999998 7889999999999999999999999985 5899999888754322111
Q ss_pred ----cCCC--------CCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc---cccCC-CCcEEEEeeCCCCccCcH
Q 004149 658 ----GTTD--------IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---HISKV-KTPTIFLLGAQDLRVPVS 721 (771)
Q Consensus 658 ----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~~~i-~~P~Lii~G~~D~~vp~~ 721 (771)
+..- ...|+. .. ...|... ...-|+. .+.-+ ..|+|++.| +|..+++.
T Consensus 265 ~~~~Ge~v~~~~~~~ge~~Wf~-~~-----f~~y~~~---------~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p~ 328 (433)
T 4g4g_A 265 QKAAGANIQTAAQIITENPWFS-RN-----FDPHVNS---------ITSVPQDHHLLAALIVPRGLAVFEN-NIDWLGPV 328 (433)
T ss_dssp HHHTTCCCCCHHHHTTTCCCSC-TT-----TGGGTTC---------GGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCHH
T ss_pred hcccCcchhhhhcccCCccccc-hh-----hHhhccc---------cccCCcCHHHHHHhhCCceEEEecC-CCCcCCcH
Confidence 1000 001110 00 0000000 0000111 11111 257999999 89888876
Q ss_pred HHHHHHHHH----HhCCC--CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 722 NGLQYARAL----REKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 722 ~~~~~~~~l----~~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
.....+..+ +..|. ++.+...++.+|+.. +. +....+.+||+++|+
T Consensus 329 g~~~a~~aa~~VY~~lGa~d~l~~~~~ggH~Hc~f-p~---~~r~~~~~F~~k~Lk 380 (433)
T 4g4g_A 329 STTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQF-PS---SQNQDLNSYINYFLL 380 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGEEEEECCSSCTTCC-CG---GGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCccceEEEeeCCCCcccC-CH---HHHHHHHHHHHHHhC
Confidence 555433333 22343 467765545456432 22 234788899999985
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=130.17 Aligned_cols=210 Identities=14% Similarity=0.076 Sum_probs=125.4
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcE---E----------EEECCCCCCCCChhhhh-c--CCCCccccchhhHH
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---L----------LIVNYRGSLGFGEEALQ-S--LPGKVGSQDVNDVL 601 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---V----------~~~d~rG~~~~g~~~~~-~--~~~~~~~~~~~D~~ 601 (771)
+.|||+||.+.+ ...|...+..|+++++. | +.+|-++....+..... . ..........+++.
T Consensus 4 ~pvvllHG~~~~--~~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGGN--ASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTCC--TTTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCC--cchHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 558899997665 45688899999988763 3 33332211100000000 0 00001112255666
Q ss_pred HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004149 602 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 602 ~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
++++.+.++. +.+++.++||||||.+++.++.++|+ +++++|+.++..+......... .+.
T Consensus 82 ~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~--------~~~---- 147 (254)
T 3ds8_A 82 IAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGM--------DLS---- 147 (254)
T ss_dssp HHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCS--------CTT----
T ss_pred HHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccccc--------ccc----
Confidence 6677777763 33789999999999999999999988 8999999988654322111000 000
Q ss_pred CcCCCCCC-hhhHHHHhhcCccccccCCCCcEEEEeeC------CCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--CCc
Q 004149 677 DSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--DVH 747 (771)
Q Consensus 677 ~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~~H 747 (771)
+...+. ......+... ...+.+ ++|+|.|+|+ .|..||+..++.+...+.......+...+.+ ++|
T Consensus 148 --~~~~p~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g~~a~H 222 (254)
T 3ds8_A 148 --FKKLPNSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVH 222 (254)
T ss_dssp --CSSCSSCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEESGGGCG
T ss_pred --cccCCcchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeCCCCch
Confidence 000111 1111111111 112222 6899999999 9999999998888777765434455556655 679
Q ss_pred cCCCCCChHHHHHHHHHHHHHHh
Q 004149 748 GIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
..... +. ++.+.+..||+++.
T Consensus 223 s~l~~-~~-~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 223 QTLHE-TP-KSIEKTYWFLEKFK 243 (254)
T ss_dssp GGGGG-SH-HHHHHHHHHHHTCC
T ss_pred hcccC-CH-HHHHHHHHHHHHhc
Confidence 76533 33 68899999998764
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=136.64 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=85.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH------CCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~------~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
+|..|+.....+. ....+.||++||.+++ ...|...+..|++ .||.|+++|+|| +|.+....
T Consensus 93 ~g~~i~~~~~~~~----~~~~~pllllHG~~~s--~~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG---~G~S~~~~--- 160 (408)
T 3g02_A 93 EGLTIHFAALFSE----REDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSGPP--- 160 (408)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCCSC---
T ss_pred CCEEEEEEEecCC----CCCCCeEEEECCCCCc--HHHHHHHHHHHhcccccccCceEEEEECCCC---CCCCCCCC---
Confidence 6888988777654 2345779999998776 4568888888887 699999999999 44432211
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCC-eEEEEEcChhHHHHHHHHHhCCCceeEEEecCC
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPS-KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~-ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p 649 (771)
.......+++.+.+..+.+.- +.+ +++++||||||.+++.+|.++|+++...+..++
T Consensus 161 ~~~~~~~~~~a~~~~~l~~~l--g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~ 218 (408)
T 3g02_A 161 LDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCN 218 (408)
T ss_dssp SSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHh--CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCC
Confidence 011234666666666666652 344 899999999999999999999876666555444
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-11 Score=126.37 Aligned_cols=299 Identities=10% Similarity=0.018 Sum_probs=162.0
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.+|||+.|+... ..+.+.+|++............. .....+...+|||||++||..+... ...
T Consensus 24 ~sp~g~~las~~---------~D~~i~iw~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~ 86 (345)
T 3fm0_A 24 WNPAGTLLASCG---------GDRRIRIWGTEGDSWICKSVLSE---GHQRTVRKVAWSPCGNYLASASFDA-----TTC 86 (345)
T ss_dssp ECTTSSCEEEEE---------TTSCEEEEEEETTEEEEEEEECS---SCSSCEEEEEECTTSSEEEEEETTS-----CEE
T ss_pred ECCCCCEEEEEc---------CCCeEEEEEcCCCcceeeeeecc---ccCCcEEEEEECCCCCEEEEEECCC-----cEE
Confidence 467888777543 23456666664331101111111 1224588899999999998876543 344
Q ss_pred Ee--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC---CCCccCCCCCCccc
Q 004149 129 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG---SSDKDCNSWKGQGD 203 (771)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 203 (771)
+| ..+....+..+. +..+. +.+++|+|||+.|+..+.+...+ .|+....... .....+......+.
T Consensus 87 iw~~~~~~~~~~~~~~-~h~~~------v~~v~~sp~~~~l~s~s~D~~v~--iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLE-GHENE------VKSVAWAPSGNLLATCSRDKSVW--VWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp EEEECCC-EEEEEEEC-CCSSC------EEEEEECTTSSEEEEEETTSCEE--EEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred EEEccCCCeEEEEEcc-CCCCC------ceEEEEeCCCCEEEEEECCCeEE--EEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 55 222222222221 11112 26899999999999988766432 3332211110 11112333344567
Q ss_pred ccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 204 WEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
|.++....+++..+..|.+||+.+++.. .+ ......+..++|+|||+. |+..+. +.
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~--~~h~~~v~~l~~sp~g~~----l~s~s~---------------D~ 216 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATL--EGHESTVWSLAFDPSGQR----LASCSD---------------DR 216 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECTTSSE----EEEEET---------------TS
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe--cCCCCceEEEEECCCCCE----EEEEeC---------------CC
Confidence 8888666666777889999999887643 33 334456889999999997 777662 12
Q ss_pred eeEEEec--ccccchhhhhhhhcCCCCCCc-ceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 281 ALYAVRV--SLYKSEASELELKESSSEDLP-VVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 281 ~l~~~d~--~~~~~~~~~~~~~~~~~~~~~-~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
.|.++++ +... ..... ........ ...+.. +...+...+|+|+|..|+..+.+. .|.++++
T Consensus 217 ~v~iW~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----------~i~vw~~ 281 (345)
T 3fm0_A 217 TVRIWRQYLPGNE---QGVAC-SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD-----------AIRVFQE 281 (345)
T ss_dssp CEEEEEEECTTCT---TCCCC-C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS-----------CEEEEEE
T ss_pred eEEEeccccCCCC---cccee-eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC-----------eEEEEEe
Confidence 3444443 1000 00000 00000000 111222 344578899999999998877653 3667776
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
.++......... ....... .+...+..++|+|++..++++.+.++...||.+.
T Consensus 282 ~~~~~~~~~~~~-~~~~~~~---------~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 282 DPNSDPQQPTFS-LTAHLHQ---------AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp CTTSCTTSCCEE-EEEEETT---------SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred CCCCCcceeeEE-EEeeecc---------cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 554321110000 0000000 0112355788999987677888888888888654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=131.58 Aligned_cols=259 Identities=9% Similarity=0.012 Sum_probs=151.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+..++|||||+++|-.+.+. ... + ++..+.+. +..+. ...++||||| ..+
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~-----TV~-d--~~~~~~l~---gh~~~------v~~V~FsPdg-------~~~---- 67 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDI-----SIG-Q--PKYAKDIN---CNSKN------LFHVKEFPLE-------FEN---- 67 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSE-----EEE-E--ECCCSCCS---SBGGG------TEEEEEECCC-------CCC----
T ss_pred ccEEEEEECCCCCEEEEEcCCc-----eee-c--ccccceec---CCCcc------EEEEEECCCC-------Ccc----
Confidence 4588899999999998764432 222 2 11111111 11112 2588999999 111
Q ss_pred CCccCCCCCCCCCCc-cCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC-----ccceEEEecCCC
Q 004149 179 PTFSLGSTKGGSSDK-DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-----SVGQVVWAPLNE 252 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~-----~~~~~~wspDg~ 252 (771)
.|............ .+..+.....|+||+....+......+.+||.++ ....+ . .+. .+..++|||||+
T Consensus 68 -~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l--~-~~~~~~~~sv~svafSPDG~ 142 (588)
T 2j04_A 68 -KLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNL--D-SKGNLSSRTYHCFEWNPIES 142 (588)
T ss_dssp -TTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEEC--C-CSSCSTTTCEEEEEECSSSS
T ss_pred -eEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeec--c-CCCccccccEEEEEEcCCCC
Confidence 12111111111111 2245556778999977777777889999999655 33333 2 222 477999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--------eec----CCCCcccc
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--------VNL----TESISSAF 320 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~l----t~~~~~~~ 320 (771)
. |+..+ .++.|.++|+ .++.. ..+ ..+...+.
T Consensus 143 ~----LAsgs---------------~DGtVkIWd~-----------------~~~~l~~~~~i~l~ti~~~~~gh~~~V~ 186 (588)
T 2j04_A 143 S----IVVGN---------------EDGELQFFSI-----------------RKNSENTPEFYFESSIRLSDAGSKDWVT 186 (588)
T ss_dssp C----EEEEE---------------TTSEEEEEEC-----------------CCCTTTCCCCEEEEEEECSCTTCCCCEE
T ss_pred E----EEEEc---------------CCCEEEEEEC-----------------CCCccccccceeeeeeecccccccccEE
Confidence 8 88876 3447778887 44432 333 33445689
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
+.+||||| |+..+.+ ..+++||+.++....+... +. ..+...+..++|+ |
T Consensus 187 sVawSPdg--Laass~D-----------~tVrlWd~~~~~~~~~~~t-------L~--------~~h~~~V~svaFs--g 236 (588)
T 2j04_A 187 HIVWYEDV--LVAALSN-----------NSVFSMTVSASSHQPVSRM-------IQ--------NASRRKITDLKIV--D 236 (588)
T ss_dssp EEEEETTE--EEEEETT-----------CCEEEECCCSSSSCCCEEE-------EE--------CCCSSCCCCEEEE--T
T ss_pred EEEEcCCc--EEEEeCC-----------CeEEEEECCCCccccceee-------ec--------ccccCcEEEEEEE--C
Confidence 99999999 6555544 3488889877663210000 00 0011246788899 4
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEec-CCCCCceeeEE--eecCCEEEEEEeCCCCCCeEEEE
Q 004149 401 CTMLLSSIWGSSQVIISVNVSSGELLRIT-PAESNFSWSLL--TLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~--s~d~~~l~~~~s~~~~p~~l~~~ 463 (771)
+.|+.+ . . ..+..+++.+++...+. .....+....| ++|+..++.+..+.. .++..
T Consensus 237 ~~LASa-~-~--~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~---klw~~ 295 (588)
T 2j04_A 237 YKVVLT-C-P--GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY---KVLLE 295 (588)
T ss_dssp TEEEEE-C-S--SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE---EEEES
T ss_pred CEEEEE-e-C--CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC---EEEee
Confidence 655443 3 3 35666688888885554 44445666788 888865544443322 56654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-11 Score=124.70 Aligned_cols=243 Identities=11% Similarity=0.117 Sum_probs=141.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++|+..+... .+.+|+ .++..+.+... .+. +.++.|+|+++.|+..+.+...
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~-----~v~~wd~~~~~~~~~~~~h---~~~------v~~~~~~~~~~~l~s~s~D~~i 131 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDK-----TLRLWDVATGETYQRFVGH---KSD------VMSVDIDKKASMIISGSRDKTI 131 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECC---SSC------EEEEEECTTSCEEEEEETTSCE
T ss_pred ccEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCeeEEEccC---CCc------EEEEEEcCCCCEEEEEeCCCeE
Confidence 5578899999999998776544 566773 33332222211 111 2689999999999988877644
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCC------cCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEED------WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
+ .|+.. .........+..+.....+.+. ....+++.....|.+||+.+++..... ......+..++|+||
T Consensus 132 ~--vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 132 K--VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-IGHNSNINTLTASPD 207 (319)
T ss_dssp E--EEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-CCCCSCEEEEEECTT
T ss_pred E--EEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-cCCCCcEEEEEEcCC
Confidence 3 33321 1111111122233333344442 123445556788999999887754431 344556888999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE
Q 004149 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
|+. |+..+ .+..|.++|+ .+++..........+...+|||||..
T Consensus 208 g~~----l~s~~---------------~dg~i~iwd~-----------------~~~~~~~~~~~~~~v~~~~~sp~~~~ 251 (319)
T 3frx_A 208 GTL----IASAG---------------KDGEIMLWNL-----------------AAKKAMYTLSAQDEVFSLAFSPNRYW 251 (319)
T ss_dssp SSE----EEEEE---------------TTCEEEEEET-----------------TTTEEEEEEECCSCEEEEEECSSSSE
T ss_pred CCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCcEEEEEEcCCCCE
Confidence 997 77665 3347888888 55543322233456888999999998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|+..... .+.++++.++... ..+.... ..+.......+..++|||||+.| ++...+
T Consensus 252 la~~~~~------------~i~v~~~~~~~~~----------~~~~~~~-~~~~~~~~~~v~~~~~spdg~~l-~sg~~D 307 (319)
T 3frx_A 252 LAAATAT------------GIKVFSLDPQYLV----------DDLRPEF-AGYSKAAEPHAVSLAWSADGQTL-FAGYTD 307 (319)
T ss_dssp EEEEETT------------EEEEEEETTEEEE----------EEECCCC-TTCCGGGCCCEEEEEECTTSSEE-EEEETT
T ss_pred EEEEcCC------------CcEEEEeCcCeee----------eccCccc-cccccCcCcceeEEEECCCCCEE-EEeecC
Confidence 8765532 2566666543211 0000000 00000011123467899999966 455667
Q ss_pred CeeEEEEEE
Q 004149 411 SSQVIISVN 419 (771)
Q Consensus 411 ~~~~l~~~d 419 (771)
+...||.+.
T Consensus 308 g~i~vWd~~ 316 (319)
T 3frx_A 308 NVIRVWQVM 316 (319)
T ss_dssp SCEEEEEEE
T ss_pred ceEEEEEEe
Confidence 777777654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-11 Score=126.67 Aligned_cols=262 Identities=8% Similarity=0.035 Sum_probs=145.5
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC--cccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.++++++++.++.... ...++.++ ..++..+.+.... .. ..+.|||||+.+++...
T Consensus 4 g~~~~~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~~~v~~~------- 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPDKFGP----------GTAMMAPDNRTAYVLNN------- 62 (349)
T ss_dssp CCCCCTTCEEEEEEET----TTEEEEEETTTTEEEEEEECSSCCSS----------CEEEECTTSSEEEEEET-------
T ss_pred cccccCCCEEEEEeCC----CCeEEEEECCCCcEEEEEecCCCCCC----------ceeEECCCCCEEEEEeC-------
Confidence 3567887776554433 23566666 4555555555433 23 48899999987766532
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-----CCccceEEEecCCCCC
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGL 254 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-----~~~~~~~~wspDg~~~ 254 (771)
....|++||+.+++......... ...+..++|||||+.
T Consensus 63 ------------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~- 105 (349)
T 1jmx_B 63 ------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE- 105 (349)
T ss_dssp ------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE-
T ss_pred ------------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCE-
Confidence 23689999999887654311121 123678899999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee---cCCCCccccceeecCCCCEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN---LTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt~~~~~~~~p~~SpDG~~l 331 (771)
|++........+. .+ ......|+++|+ .+++... .......+....|||||+ |
T Consensus 106 ---l~~~~~~~~~~~~--~~-~~~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 106 ---VYATVNPTQRLND--HY-VVKPPRLEVFST-----------------ADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp ---EEEEEEEEEECSS--CE-EECCCEEEEEEG-----------------GGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred ---EEEEccccccccc--cc-ccCCCeEEEEEC-----------------CCccccceeeeccCCCcccceeECCCCc-E
Confidence 7776632100000 00 011348999998 4433221 112223456677999999 5
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCcc-cee------------------------eEEecccccC-------
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE-KIV------------------------DVIPVVQCAE------- 379 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~------------------------~~~~~~~~~~------- 379 (771)
++.+ ..|+++|+.+++...... ... ....+...+.
T Consensus 162 ~~~~-------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 162 YVAG-------------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EEES-------------SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred EEcc-------------CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 5521 128888887765422110 000 0000000000
Q ss_pred -------------CCCCcc----cccCCCCCCcccc-CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEe
Q 004149 380 -------------GDCFPG----LYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 441 (771)
Q Consensus 380 -------------~~~f~g----~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s 441 (771)
.+...- -.......++|+| ||+.|++. ...|+.+|+.+++...............++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s 303 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFD 303 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEEC
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEEC
Confidence 000000 0000123557889 99987766 347899999999876554333334567899
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 442 LDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 442 ~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+|++.|++. +. -..|.+.+..+.
T Consensus 304 ~dg~~l~~~--~~--~~~v~v~d~~~~ 326 (349)
T 1jmx_B 304 KKGDKLYLG--GT--FNDLAVFNPDTL 326 (349)
T ss_dssp SSSSCEEEE--SB--SSEEEEEETTTT
T ss_pred CCCCEEEEe--cC--CCeEEEEecccc
Confidence 999988773 22 267888776543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-11 Score=125.68 Aligned_cols=262 Identities=11% Similarity=0.056 Sum_probs=158.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||+.||.....+ .+.+|+ .+...+....... ......|+|||+.|+..+.+...
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQVTET---------PVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSS---------CEEEEEEEGGGTEEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCceeEEeeccCC---------cEEEEEEeCCCCEEEEECCCCEE
Confidence 4588999999999998776543 566773 2333333322111 12588999999999988876543
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecC-CCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL-NEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspD-g~~~ 254 (771)
+ .|+............+........|.++....+++..+..|.+||+.++. ..... ......+..++|+|+ +..
T Consensus 80 ~--vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~- 155 (304)
T 2ynn_A 80 R--VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPST- 155 (304)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE-CCCCSCEEEEEECTTCTTE-
T ss_pred E--EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh-cccCCcEEEEEECCCCCCE-
Confidence 3 34433222222233345555667788887667777788999999998873 33321 334456788999995 454
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecC-CCCccccceeecC--CCCE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLT-ESISSAFFPRFSP--DGKF 330 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt-~~~~~~~~p~~Sp--DG~~ 330 (771)
|+..+ .+..|.++|+ ..+ ....+. .....+....|+| |++.
T Consensus 156 ---l~sgs---------------~D~~v~iwd~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 156 ---FASGC---------------LDRTVKVWSL-----------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp ---EEEEE---------------TTSEEEEEET-----------------TCSSCSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred ---EEEEe---------------CCCeEEEEEC-----------------CCCCccceeccCCcCcEEEEEEEEcCCCCE
Confidence 44443 2336888887 332 222332 2334456667765 7788
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|+..+.+ ..|.+||+.+++......+ +...+...+|+|+++. +++...+
T Consensus 201 l~s~s~D-----------~~i~iWd~~~~~~~~~~~~-------------------h~~~v~~~~~~p~~~~-l~s~s~D 249 (304)
T 2ynn_A 201 MITASDD-----------LTIKIWDYQTKSCVATLEG-------------------HMSNVSFAVFHPTLPI-IISGSED 249 (304)
T ss_dssp EEEEETT-----------SEEEEEETTTTEEEEEEEC-------------------CSSCEEEEEECSSSSE-EEEEETT
T ss_pred EEEEcCC-----------CeEEEEeCCCCccceeeCC-------------------CCCCEEEEEECCCCCE-EEEEcCC
Confidence 8776654 3588999877543211100 0112445789999984 4566667
Q ss_pred CeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCE
Q 004149 411 SSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDN 446 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~d~~~ 446 (771)
+...|| |+.+++..+..... .......++|+++.
T Consensus 250 g~i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 250 GTLKIW--NSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp SCEEEE--ETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred CeEEEE--ECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 666665 78788766544332 23333455666654
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=133.27 Aligned_cols=209 Identities=12% Similarity=0.068 Sum_probs=124.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHH-HHHHcC
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~ 611 (771)
..+..|.||++||.+.......|...+..|. .+|.|+++|+|| +|.+.. ....++++.+.+. .+.+.
T Consensus 63 ~~~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~-------~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 63 DGPGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPG---YEEGEP-------LPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CCSCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTT---SSTTCC-------BCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh-
Confidence 3445689999999776532256777777774 469999999999 444311 1123455444433 44443
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCccchhhhhcCCCCCcch--hhhhccCCCCCcCCCCCChh
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPSVE 686 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 686 (771)
.+.+++.|+|||+||.+++.++.++| ++++++|+.++........ ...+. ....+.. .........
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~ 201 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDA----MNAWLEELTATLFD----RETVRMDDT 201 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHH----HHHHHHHHHGGGCC----CCSSCCCHH
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhH----HHHHHHHHHHHHHh----CcCCccchH
Confidence 24568999999999999999999987 4899999988764321100 00000 0000000 000000001
Q ss_pred ---hHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC-CCCEEEEEeCCCCccCCCCCChHHHHHHH
Q 004149 687 ---DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 687 ---~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 762 (771)
....+..........++++|+|+++|+ |..+++.. .. +... ...++++++++ +|.....+....+...|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i 274 (300)
T 1kez_A 202 RLTALGAYDRLTGQWRPRETGLPTLLVSAG-EPMGPWPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHI 274 (300)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSCCBEEEEES-SCSSCCCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCEEEEEeC-CCCCCCcc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHH
Confidence 111111111112346789999999995 66666554 22 2222 22478999999 99876435566888999
Q ss_pred HHHHHHH
Q 004149 763 GLWFKKY 769 (771)
Q Consensus 763 ~~wl~~~ 769 (771)
.+||++.
T Consensus 275 ~~fl~~~ 281 (300)
T 1kez_A 275 DAWLGGG 281 (300)
T ss_dssp HHHHTCC
T ss_pred HHHHHhc
Confidence 9998754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-11 Score=149.45 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=154.9
Q ss_pred cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec
Q 004149 154 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 233 (771)
Q Consensus 154 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l 233 (771)
...+++|||||+.|++........ .|+............+........|+++....+++.....|.+||+.+++...+
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~--i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIK--IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCE--EEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEE--EEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 446889999999999987665432 233222222222233445556778899876677777788999999999988776
Q ss_pred cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceec
Q 004149 234 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 312 (771)
Q Consensus 234 ~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l 312 (771)
......+..+.|+||++ ++..+ ....|.++|+ .+++ ...+
T Consensus 1041 --~~~~~~v~~~~~~~~~~-----l~~~~---------------~dg~v~vwd~-----------------~~~~~~~~~ 1081 (1249)
T 3sfz_A 1041 --QAHQETVKDFRLLQDSR-----LLSWS---------------FDGTVKVWNV-----------------ITGRIERDF 1081 (1249)
T ss_dssp --BCCSSCEEEEEECSSSE-----EEEEE---------------SSSEEEEEET-----------------TTTCCCEEE
T ss_pred --ecCCCcEEEEEEcCCCc-----EEEEE---------------CCCcEEEEEC-----------------CCCceeEEE
Confidence 45556788899999876 55444 2347888998 4444 4566
Q ss_pred CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004149 313 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 313 t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
..+...+....|||||+.|+..+.+. .|.+||+.++......... ...+.
T Consensus 1082 ~~~~~~v~~~~~s~d~~~l~s~s~d~-----------~v~iwd~~~~~~~~~l~~h-------------------~~~v~ 1131 (1249)
T 3sfz_A 1082 TCHQGTVLSCAISSDATKFSSTSADK-----------TAKIWSFDLLSPLHELKGH-------------------NGCVR 1131 (1249)
T ss_dssp ECCSSCCCCEEECSSSSSCEEECCSS-----------CCCEECSSSSSCSBCCCCC-------------------SSCEE
T ss_pred cccCCcEEEEEECCCCCEEEEEcCCC-----------cEEEEECCCcceeeeeccC-------------------CCcEE
Confidence 66777789999999999998877653 4888888776543221111 11245
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec----------CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004149 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----------PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 393 ~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~----------~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~ 462 (771)
.++|||||+.|+ +...++...+| |+.+++..... .....+....|++|++.++... ..+.+
T Consensus 1132 ~~~~s~dg~~la-t~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~------g~v~v 1202 (1249)
T 3sfz_A 1132 CSAFSLDGILLA-TGDDNGEIRIW--NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG------GYLKW 1202 (1249)
T ss_dssp EEEECSSSSEEE-EEETTSCCCEE--ESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES------SSEEE
T ss_pred EEEECCCCCEEE-EEeCCCEEEEE--ECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC------CeEEE
Confidence 678999998664 44555554555 77777644321 2223456678999999886542 35777
Q ss_pred EEeccc
Q 004149 463 GYFVDK 468 (771)
Q Consensus 463 ~~~~~~ 468 (771)
.++.++
T Consensus 1203 wd~~~g 1208 (1249)
T 3sfz_A 1203 WNVATG 1208 (1249)
T ss_dssp BCSSSC
T ss_pred EECCCC
Confidence 666544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=132.60 Aligned_cols=269 Identities=11% Similarity=0.062 Sum_probs=161.0
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+......+.+.+|++.... ....+.. ....+...+|+|+|+.|+..+... .+.+|+-.....+..+. +
T Consensus 123 l~s~s~Dg~i~vwd~~~~~-~~~~l~~-----h~~~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~~~~~~~~-~ 190 (410)
T 1vyh_C 123 MVSASEDATIKVWDYETGD-FERTLKG-----HTDSVQDISFDHSGKLLASCSADM-----TIKLWDFQGFECIRTMH-G 190 (410)
T ss_dssp EEEEESSSCEEEEETTTCC-CCEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----CCCEEETTSSCEEECCC-C
T ss_pred EEEEeCCCeEEEEECCCCc-EEEEEec-----cCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEEc-C
Confidence 3344455677787764332 1222221 225688899999999888765543 34445221112222221 1
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004149 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
..+ .+.++.|+|||+.|+..+.+...+ .|+............+..+.....+.++....+++..+..|.+||
T Consensus 191 h~~------~V~~v~~~p~~~~l~s~s~D~~i~--~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 191 HDH------NVSSVSIMPNGDHIVSASRDKTIK--MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CSS------CEEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCC------CEEEEEEeCCCCEEEEEeCCCeEE--EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 111 236899999999998887665432 343322222222333445555566777765566667788999999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCCC----------------ccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGL----------------HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~~----------------~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
+.+++..... ......+..+.|+|++... +.+|+..+ .+..|.++|+
T Consensus 263 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs---------------~D~~i~iwd~- 325 (410)
T 1vyh_C 263 VATKECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS---------------RDKTIKMWDV- 325 (410)
T ss_dssp TTTCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---------------TTSEEEEEET-
T ss_pred CCCCceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---------------CCCeEEEEEC-
Confidence 9888765431 3444567888999974210 00033333 3447889998
Q ss_pred cccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004149 289 LYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.++. ...+..+...+....|+|+|++|+..+.+ ..|.+||+.+++.......
T Consensus 326 ----------------~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----------~~i~vwd~~~~~~~~~~~~ 378 (410)
T 1vyh_C 326 ----------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-----------KTLRVWDYKNKRCMKTLNA 378 (410)
T ss_dssp ----------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-----------TEEEEECCTTSCCCEEEEC
T ss_pred ----------------CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEcC
Confidence 4444 45566667778899999999998876654 3588999876553211110
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
+...+..++|+|++..| ++.+.++...+|.
T Consensus 379 -------------------h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 379 -------------------HEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE 408 (410)
T ss_dssp -------------------CSSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred -------------------CCCcEEEEEEcCCCCEE-EEEeCCCcEEEEe
Confidence 11124567899999855 5666777777774
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=131.85 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=98.8
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCcee-EEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHH
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV-AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~-a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
..+|++||+|+|+|+||++++.++..+|++|+ ++++.++...... .+.. ....+.. .+......+...
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~----~~~~---~~~~~~~----~~~~~~~~~~~~ 74 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA----RNQY---YTSCMYN----GYPSITTPTANM 74 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTT----SSSC---GGGGSTT----CCCCCHHHHHHH
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEeccccccc----chHH---HHHHhhc----cCCCCCCHHHHH
Confidence 34889999999999999999999999999998 8776665321100 0000 0000000 000001112222
Q ss_pred HHhhcCccccccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCC--CEEEEEeCCCCccCCCCCC------------
Q 004149 690 RFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIERPQS------------ 754 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~~~~~------------ 754 (771)
.....+++..+.+++ +|+||+||+.|.+||++++++++++|++.+. +++++.+++++|.+.....
T Consensus 75 ~~~~~~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~ 154 (318)
T 2d81_A 75 KSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTS 154 (318)
T ss_dssp HHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCT
T ss_pred HHhhcccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCC
Confidence 222224555555554 6899999999999999999999999998874 7999999999998653221
Q ss_pred ------hHHHHHHHHHHHHHH
Q 004149 755 ------DFESFLNIGLWFKKY 769 (771)
Q Consensus 755 ------~~~~~~~i~~wl~~~ 769 (771)
..+....|++||...
T Consensus 155 pyi~~~~~d~~~~i~~ff~g~ 175 (318)
T 2d81_A 155 PYISNCNYDGAGAALKWIYGS 175 (318)
T ss_dssp TCEEECSSCHHHHHHHHHHSS
T ss_pred CcccCCCChHHHHHHHHHhcc
Confidence 246677899998643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=128.50 Aligned_cols=260 Identities=9% Similarity=0.035 Sum_probs=151.6
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC-cceEEEecCCcc
Q 004149 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS-QLEKEFHVPQTV 145 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~ 145 (771)
...+.+.+|++.... ....+... ...+...+|||+|+.||.....+ ...+|+ .+ ...++...-.+.
T Consensus 74 s~Dg~v~iWd~~~~~-~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~d~-----~v~iw~~~~~~~~~~~~~~~~~h 142 (340)
T 1got_B 74 SQDGKLIIWDSYTTN-KVHAIPLR-----SSWVMTCAYAPSGNYVACGGLDN-----ICSIYNLKTREGNVRVSRELAGH 142 (340)
T ss_dssp ETTTEEEEEETTTCC-EEEEEECS-----SSCEEEEEECTTSSEEEEEETTC-----EEEEEETTTCSBSCEEEEEEECC
T ss_pred eCCCcEEEEECCCCC-cceEeecC-----CccEEEEEECCCCCEEEEEeCCC-----eEEEEECccCCCcceeEEEecCC
Confidence 344577777763321 12222211 24578899999999998776543 455552 11 111221111111
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004149 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
.+ .+..+.|+||++ |+..+.+...+ .|+............+........|.++....+++..+..|.+||+
T Consensus 143 ~~------~v~~~~~~~~~~-l~s~s~d~~i~--~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 143 TG------YLSCCRFLDDNQ-IVTSSGDTTCA--LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp SS------CEEEEEEEETTE-EEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred Cc------cEEEEEECCCCc-EEEEECCCcEE--EEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 11 226788999986 66665554322 3433222211222223334456678888655666777889999999
Q ss_pred cCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004149 226 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
.+++..... ......+..++|+|||+. |+..+ .+..|.++|+ .
T Consensus 214 ~~~~~~~~~-~~h~~~v~~v~~~p~~~~----l~s~s---------------~d~~v~iwd~-----------------~ 256 (340)
T 1got_B 214 REGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRLFDL-----------------R 256 (340)
T ss_dssp TTCSEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-----------------T
T ss_pred CCCeeEEEE-cCCcCCEEEEEEcCCCCE----EEEEc---------------CCCcEEEEEC-----------------C
Confidence 888765441 334556889999999997 77655 3346888887 4
Q ss_pred CCcc-eecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCC
Q 004149 306 DLPV-VNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 382 (771)
Q Consensus 306 ~~~~-~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (771)
.++. ..+... ...+.+..|||||+.|+..+.+ ..|.+||+.++.......+
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----------~~i~vwd~~~~~~~~~~~~--------------- 310 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADRAGVLAG--------------- 310 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEEC---------------
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCC-----------CeEEEEEcccCcEeeEeec---------------
Confidence 4332 233222 2347889999999988876654 3588999876543111000
Q ss_pred CcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 383 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 383 f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+...+..++|+|||+.| ++.+.++...||
T Consensus 311 ----h~~~v~~~~~s~dg~~l-~s~s~D~~i~iW 339 (340)
T 1got_B 311 ----HDNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp ----CSSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred ----CCCcEEEEEEcCCCCEE-EEEcCCccEEec
Confidence 11134567899999855 566667777776
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-11 Score=127.17 Aligned_cols=291 Identities=12% Similarity=0.043 Sum_probs=169.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec--CCcccccccCCCcccceeecCC---CCeEEEEe
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSD---ETLIAYVA 171 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpD---g~~la~~~ 171 (771)
..+...+|||+|+.++...... .....+.+| ..++...+... ...+ .+++|+|+ |+.|+..+
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKAKPI----------KCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCE----------EEEECTTCCTTTCCEEEEE
T ss_pred CceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecccCcE----------EEEEEcCCCCCCceEEEec
Confidence 4588999999998887765431 112244455 33333333322 2222 68999999 68888877
Q ss_pred cCCCCCCCCccCCCCC-CCCCCccCCCCCCcc------cccCCcCcccCCccCceEEEEEccCCc--eeeccCCCC--CC
Q 004149 172 EEPSPSKPTFSLGSTK-GGSSDKDCNSWKGQG------DWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPK--SL 240 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~--~~ 240 (771)
.+.... .|+..... .......+....... .|+++....+++.....|.+||+.+++ ...+..... ..
T Consensus 88 ~dg~i~--iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 88 FGGNLH--IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp TTSCEE--EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred CCCeEE--EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 665432 33322222 111122222222222 456676566666777899999998875 344421111 12
Q ss_pred ccceEE----EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC
Q 004149 241 SVGQVV----WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 316 (771)
Q Consensus 241 ~~~~~~----wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 316 (771)
.+..+. |+||++. |+..+ ....|+++|+ .+++........
T Consensus 166 ~v~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~~~ 209 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERV----VCAGY---------------DNGDIKLFDL-----------------RNMALRWETNIK 209 (357)
T ss_dssp CEEEEEEECCCC-CCCE----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECS
T ss_pred ceEEEEEEeccCCCCCE----EEEEc---------------cCCeEEEEEC-----------------ccCceeeecCCC
Confidence 445555 7899986 66655 3347899998 666665556666
Q ss_pred ccccceeecC---CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 317 SSAFFPRFSP---DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 317 ~~~~~p~~Sp---DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
..+....|+| +|+.|+..+.+ ..|.+||+.++......... .... ....+..
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~-----~~~~---------~~~~v~~ 264 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLE-----------GKFHVFDMRTQHPTKGFASV-----SEKA---------HKSTVWQ 264 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEEST-----------TEEEEEEEEEEETTTEEEEE-----EEEC---------CSSCEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCC-----------CeEEEEeCcCCCcccceeee-----ccCC---------CcCCEEE
Confidence 7789999999 99998877654 25888888765432211000 0000 1113456
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECCCCc------------------EEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 394 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGE------------------LLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~------------------~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
++|+||++.++++...++...+|.++..... +..+......+....|+++++.|+++.+..
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d- 343 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD- 343 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT-
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC-
Confidence 7899999877788887888888877642211 223333334455678888888877555432
Q ss_pred CCCeEEEEEec
Q 004149 456 DVPQVKYGYFV 466 (771)
Q Consensus 456 ~p~~l~~~~~~ 466 (771)
..+.+.++.
T Consensus 344 --~~i~iw~~~ 352 (357)
T 3i2n_A 344 --QTVRVLIVT 352 (357)
T ss_dssp --SEEEEEEEC
T ss_pred --CcEEEEECC
Confidence 245555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-11 Score=128.44 Aligned_cols=267 Identities=12% Similarity=0.076 Sum_probs=167.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||+|+.|+..+..+ .+.+| ..++..+.+.... +. +.+++|+|||+.|+..+.+...
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~h~---~~------V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKGHT---DS------VQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECCCS---SC------EEEEEECTTSSEEEEEETTSCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEeccC---Cc------EEEEEEcCCCCEEEEEeCCCeE
Confidence 5688899999999988776543 45566 3344444333211 11 2689999999999988877654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+ .|+............+........|.++....+++..+..|.+||+.++...... ......+..+.|+|||+.
T Consensus 175 ~--iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~--- 248 (410)
T 1vyh_C 175 K--LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL--- 248 (410)
T ss_dssp C--EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE---
T ss_pred E--EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCE---
Confidence 4 4443222222223334444456678888666677778899999999988754431 233446778899999996
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCC--------
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD-------- 327 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpD-------- 327 (771)
|+..+ .+..|.++|+ .+++ ...+..+...+....|+|+
T Consensus 249 -l~s~s---------------~D~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 249 -IASCS---------------NDQTVRVWVV-----------------ATKECKAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred -EEEEc---------------CCCeEEEEEC-----------------CCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence 66655 2346888887 4444 3456666677888999997
Q ss_pred ------------CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004149 328 ------------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 328 ------------G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
|..|+..+.+ ..|.+||+.++.......+ +...+..++
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D-----------~~i~iwd~~~~~~~~~~~~-------------------h~~~v~~v~ 345 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRD-----------KTIKMWDVSTGMCLMTLVG-------------------HDNWVRGVL 345 (410)
T ss_dssp CCSCC-------CCEEEEEETT-----------SEEEEEETTTTEEEEEEEC-------------------CSSCEEEEE
T ss_pred hccccccccCCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEEC-------------------CCCcEEEEE
Confidence 5556555543 3588999877653211000 011244678
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 396 ~s~dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
|+|+|+.| ++...++...+| |+.+++ +..+......+....|++++..|+..+
T Consensus 346 ~~~~g~~l-~s~s~D~~i~vw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 346 FHSGGKFI-LSCADDKTLRVW--DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp ECSSSSCE-EEEETTTEEEEE--CCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred EcCCCCEE-EEEeCCCeEEEE--ECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEe
Confidence 99999866 455556665555 666665 344444444455667888887665443
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=122.24 Aligned_cols=198 Identities=11% Similarity=0.083 Sum_probs=123.1
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCC---cEEEEECCCCCCC--CChhhh----hc-----CCCCc-----cccchh
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVG---YSLLIVNYRGSLG--FGEEAL----QS-----LPGKV-----GSQDVN 598 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G---~~V~~~d~rG~~~--~g~~~~----~~-----~~~~~-----~~~~~~ 598 (771)
+.|||+||.+.+ ...|..++..|++.| +.|+.+|.++.+. +...+. +. ...+. .....+
T Consensus 5 ~pvv~iHG~~~~--~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~ 82 (250)
T 3lp5_A 5 APVIMVPGSSAS--QNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAV 82 (250)
T ss_dssp CCEEEECCCGGG--HHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHH
T ss_pred CCEEEECCCCCC--HHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHH
Confidence 458889996654 457888899998876 6777776654221 100000 00 00000 012346
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-----CCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
++.++++.+.++. +.+++.|+||||||.++..++.++ ++.++.+|++++..+..... +.
T Consensus 83 ~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~-----~~--------- 146 (250)
T 3lp5_A 83 WLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTS-----TT--------- 146 (250)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCC-----SS---------
T ss_pred HHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCccccc-----cc---------
Confidence 7778888887764 457899999999999999999877 66889988887754322110 00
Q ss_pred CCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeC----CCCccCcHHHHHHHHHHHhCCCCEEEEEeC--CCCc
Q 004149 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA----QDLRVPVSNGLQYARALREKGVETKVIVFP--NDVH 747 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~----~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~--~~~H 747 (771)
........+... ...+.+ ++|+|+|+|+ .|..||.+.++.+...++......+.+.+. +++|
T Consensus 147 ---------~~~~~~~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H 214 (250)
T 3lp5_A 147 ---------AKTSMFKELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKHFTEITVTGANTAH 214 (250)
T ss_dssp ---------CCCHHHHHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSEEEEEECTTTTBSS
T ss_pred ---------ccCHHHHHHHhc--cccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhcccccceEEEEEeCCCCch
Confidence 000111222211 112222 6899999999 999999998888777776533344444554 4679
Q ss_pred cCCCCCChHHHHHHHHHHHH
Q 004149 748 GIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~wl~ 767 (771)
..... +. ++.+.|.+||.
T Consensus 215 ~~l~e-~~-~v~~~I~~FL~ 232 (250)
T 3lp5_A 215 SDLPQ-NK-QIVSLIRQYLL 232 (250)
T ss_dssp CCHHH-HH-HHHHHHHHHTS
T ss_pred hcchh-CH-HHHHHHHHHHh
Confidence 76533 33 67788888875
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=123.79 Aligned_cols=256 Identities=12% Similarity=0.012 Sum_probs=131.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeE-EEEec-------C-
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKL-LVVRN-------P- 119 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~l-a~~~~-------~- 119 (771)
.++||++|+.. +. . .+.++++... ++..++...+.. +....++|||||++| +++.+ .
T Consensus 47 ~spdg~~l~~~-~~-------~--~v~~~~~~~~-g~~~~~~~~~~~---g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 47 FDHERKNIYGA-AM-------K--KWSSFAVKSP-TEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp ECTTSSEEEEE-EB-------T--EEEEEEEEET-TEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred ECCCCCEEEEE-cc-------c--eEEEEEECCC-CCEEEeeEeecC---CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 36799877543 22 1 4666666422 233332211100 113347899999973 45543 1
Q ss_pred ----CCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCcc
Q 004149 120 ----ENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 194 (771)
Q Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (771)
.++.-.+|.+...++....+.. ..... ....++.|||||++|+.. ..
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~spdG~~l~~~-~~--------------------- 164 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN------TGIHGMVFDPTETYLYSA-DL--------------------- 164 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEECCTT------CCEEEEEECTTSSEEEEE-ET---------------------
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEEeCCC------CcceEEEECCCCCEEEEE-cC---------------------
Confidence 2233345555434444333321 10000 012488999999987554 21
Q ss_pred CCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceeecc--CCCC-CCccceEEEecCCCCCccEEEEEeecCcceee
Q 004149 195 CNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVK--GIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 195 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~l~--~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
....|++||++ +|+.+.+. ..+. ...+..++|||||+. |++... .
T Consensus 165 ---------------------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~~-~----- 213 (365)
T 1jof_A 165 ---------------------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY----LYALME-A----- 213 (365)
T ss_dssp ---------------------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE----EEEEET-T-----
T ss_pred ---------------------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE----EEEEEC-C-----
Confidence 12579999998 77765431 0121 345778899999997 766542 1
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-------ecCCC-C--c-------ccccee-ecCCCCEEE
Q 004149 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTES-I--S-------SAFFPR-FSPDGKFLV 332 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~lt~~-~--~-------~~~~p~-~SpDG~~l~ 332 (771)
...|.+++++. .+++.. .+... . . ....++ |||||++|+
T Consensus 214 --------~~~v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 214 --------GNRICEYVIDP---------------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp --------TTEEEEEEECT---------------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred --------CCeEEEEEEeC---------------CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 12344443310 334321 12111 0 1 356788 999999885
Q ss_pred EEecCCCCCCCCccccccceeeecC-CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc---CCCEEEEEee
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS---DGCTMLLSSI 408 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~---dg~~l~~~~~ 408 (771)
.+++.. . ......|.++++. +++...+ ...... .......++|+| ||++|++...
T Consensus 271 -v~~~~~---~-~~~~~~i~v~~~~~~g~~~~~-------~~~~~~---------~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 271 -ASSRAN---K-FELQGYIAGFKLRDCGSIEKQ-------LFLSPT---------PTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp -EEEEES---S-TTSCCEEEEEEECTTSCEEEE-------EEEEEC---------SSCCTTCCCEEECTTCTTEEEEECS
T ss_pred -EECCCC---C-CCCCCeEEEEEECCCCCEEEe-------eeeeec---------CCCCcccceecCCCcCCCEEEEEEc
Confidence 443320 0 0001257777775 3332111 000000 001245678999 8998877655
Q ss_pred eCCeeEEEEEECC
Q 004149 409 WGSSQVIISVNVS 421 (771)
Q Consensus 409 ~~~~~~l~~~d~~ 421 (771)
..+...+|.++.+
T Consensus 330 ~~~~v~v~~~~~~ 342 (365)
T 1jof_A 330 QEGWLEIYRWKDE 342 (365)
T ss_dssp SSCEEEEEEEETT
T ss_pred CCCeEEEEEEchh
Confidence 5567778877753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=145.25 Aligned_cols=235 Identities=9% Similarity=0.032 Sum_probs=146.4
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..+|||..|+... ..+.+.+|++..+ .....+.... +.+..++|||||++||.....+ .+
T Consensus 20 ~~sp~~~~la~~~---------~~g~v~iwd~~~~-~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg-----~i 79 (814)
T 3mkq_A 20 DFHPTEPWVLTTL---------YSGRVEIWNYETQ-VEVRSIQVTE-----TPVRAGKFIARKNWIIVGSDDF-----RI 79 (814)
T ss_dssp EECSSSSEEEEEE---------TTSEEEEEETTTT-EEEEEEECCS-----SCEEEEEEEGGGTEEEEEETTS-----EE
T ss_pred EECCCCCEEEEEe---------CCCEEEEEECCCC-ceEEEEecCC-----CcEEEEEEeCCCCEEEEEeCCC-----eE
Confidence 4577898888764 2346677666332 1223333222 5688999999999999876543 45
Q ss_pred EEe--cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCccc
Q 004149 128 ELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 128 ~~~--~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 203 (771)
.+| ..++....... ... +..++|||||++|+..+.+.... .|+.... ........+........
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~dg~i~--vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDY----------IRSIAVHPTKPYVLSGSDDLTVK--LWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp EEEETTTCCEEEEEECCSSC----------EEEEEECSSSSEEEEEETTSEEE--EEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred EEEECCCCcEEEEEecCCCC----------EEEEEEeCCCCEEEEEcCCCEEE--EEECCCCceEEEEEcCCCCcEEEEE
Confidence 566 33433333321 222 26899999999999877654332 2322111 11111222333445667
Q ss_pred ccC-CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec--CCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 204 WEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 204 ~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp--Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
|++ +....+++.....|.+||+.+++............+..+.|+| ||+. |+..+ ...
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----l~~~~---------------~dg 208 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY----MITAS---------------DDL 208 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE----EEEEC---------------TTS
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE----EEEEe---------------CCC
Confidence 888 5445556666789999999876644331123335678899999 8886 66654 334
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.|.++|+ .+++ ...+..+...+..+.|+|||+.|+..+.+. .|.+||+.++
T Consensus 209 ~i~~~d~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~v~vwd~~~~ 260 (814)
T 3mkq_A 209 TIKIWDY-----------------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-----------TLKIWNSSTY 260 (814)
T ss_dssp EEEEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-----------CEEEEETTTC
T ss_pred EEEEEEC-----------------CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----------eEEEEECCCC
Confidence 7888887 4443 455555667788999999999888776543 4888888775
Q ss_pred CC
Q 004149 360 GN 361 (771)
Q Consensus 360 ~~ 361 (771)
..
T Consensus 261 ~~ 262 (814)
T 3mkq_A 261 KV 262 (814)
T ss_dssp SE
T ss_pred cE
Confidence 53
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-11 Score=123.83 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=138.5
Q ss_pred eEEEEe-cCCcceEEEecCC---cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCC
Q 004149 125 IQFELW-SQSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 200 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (771)
.+..++ ..++..+.+.... .. ..++|||||++|++....
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~--------------------------- 54 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTP----------MVPMVAPGGRIAYATVNK--------------------------- 54 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCC----------CCEEECTTSSEEEEEETT---------------------------
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCc----------cceEEcCCCCEEEEEeCC---------------------------
Confidence 455555 4455554454433 23 589999999988776432
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeec
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 276 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~ 276 (771)
...|++||+.+++......... ...+..++|+|||+. |++........+... .
T Consensus 55 ----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~~~~~~~~~~~~---~ 111 (337)
T 1pby_B 55 ----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT----LAIYESPVRLELTHF---E 111 (337)
T ss_dssp ----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE----EEEEEEEEEECSSCE---E
T ss_pred ----------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE----EEEEecccccccccc---c
Confidence 2579999999888654311121 114668899999997 777642110000000 0
Q ss_pred cCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 277 NRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 277 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
.....|+++|+ .+++.............+.|||||++|++.+ ..|+++|+
T Consensus 112 ~~~~~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-------------~~i~~~d~ 161 (337)
T 1pby_B 112 VQPTRVALYDA-----------------ETLSRRKAFEAPRQITMLAWARDGSKLYGLG-------------RDLHVMDP 161 (337)
T ss_dssp ECCCEEEEEET-----------------TTTEEEEEEECCSSCCCEEECTTSSCEEEES-------------SSEEEEET
T ss_pred ccCceEEEEEC-----------------CCCcEEEEEeCCCCcceeEECCCCCEEEEeC-------------CeEEEEEC
Confidence 02358999998 5555443333344567789999999988772 24899998
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee---------------------EE
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ---------------------VI 415 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~---------------------~l 415 (771)
.+++.... +.. .. ......|+|||+.|++.....+.. .|
T Consensus 162 ~~~~~~~~----------~~~---~~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 162 EAGTLVED----------KPI---QS-------WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TTTEEEEE----------ECS---TT-------TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCcEeee----------eec---cc-------cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 87653211 100 00 012347899998776654333322 68
Q ss_pred EEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 416 ISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~--~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+.+|+.+++...+... ........+++|++.+++. . ..|++.++.++
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~-----~~v~~~d~~~~ 270 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-Y-----NVLESFDLEKN 270 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-E-----SEEEEEETTTT
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-C-----CeEEEEECCCC
Confidence 8999999987644322 1223446899999998877 1 56888876543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-10 Score=123.37 Aligned_cols=265 Identities=11% Similarity=0.100 Sum_probs=154.2
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC-CCCeEEEEecCCCCCCeEEEEec-CCcceEEEecC
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVP 142 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 142 (771)
++.+...+.|.+|++...... ..++ +....+.+...+||| ||++|+..+.++ .+.+|+ .+...+.+...
T Consensus 135 lasGs~dg~i~lWd~~~~~~~-~~~~---~~gH~~~V~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDKP-TFIK---GIGAGGSITGLKFNPLNTNQFYASSMEG-----TTRLQDFKGNILRVFASS 205 (435)
T ss_dssp EEEEETTSCEEEECSSCCSCC-EEEC---CCSSSCCCCEEEECSSCTTEEEEECSSS-----CEEEEETTSCEEEEEECC
T ss_pred EEEEeCCCEEEEEECCCCCce-eEEE---ccCCCCCEEEEEEeCCCCCEEEEEeCCC-----EEEEeeccCCceeEEecc
Confidence 445556678888887544321 1111 111235688999999 677776654432 456663 33333333222
Q ss_pred CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE
Q 004149 143 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 222 (771)
Q Consensus 143 ~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v 222 (771)
.... .++.++.|+|||+.|+.... ...|++
T Consensus 206 ~~~~------~~~~~~~~~~~~~~l~~g~~--------------------------------------------dg~i~~ 235 (435)
T 4e54_B 206 DTIN------IWFCSLDVSASSRMVVTGDN--------------------------------------------VGNVIL 235 (435)
T ss_dssp SSCS------CCCCCEEEETTTTEEEEECS--------------------------------------------SSBEEE
T ss_pred CCCC------ccEEEEEECCCCCEEEEEeC--------------------------------------------CCcEee
Confidence 1111 12358899999998887532 357899
Q ss_pred EEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004149 223 ININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
||+.+..+..+ ......+..+.|+|+++. +++++. .+..|.++|+
T Consensus 236 wd~~~~~~~~~--~~h~~~v~~v~~~p~~~~----~~~s~s--------------~d~~v~iwd~--------------- 280 (435)
T 4e54_B 236 LNMDGKELWNL--RMHKKKVTHVALNPCCDW----FLATAS--------------VDQTVKIWDL--------------- 280 (435)
T ss_dssp EESSSCBCCCS--BCCSSCEEEEEECTTCSS----EEEEEE--------------TTSBCCEEET---------------
T ss_pred eccCcceeEEE--ecccceEEeeeecCCCce----EEEEec--------------CcceeeEEec---------------
Confidence 99988776666 344556889999999998 776652 2235677776
Q ss_pred CCCCCc----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc
Q 004149 303 SSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA 378 (771)
Q Consensus 303 ~~~~~~----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 378 (771)
...+ ......+...+.+..|||||++|+..+.+. .|.+||+.++........ ..
T Consensus 281 --~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-----------~i~iwd~~~~~~~~~~~~---------~~ 338 (435)
T 4e54_B 281 --RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS-----------EIRVYSASQWDCPLGLIP---------HP 338 (435)
T ss_dssp --TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS-----------CEEEEESSSSSSEEEECC---------CC
T ss_pred --ccccccceEEEeeeccccccceeECCCCCeeEEEcCCC-----------EEEEEECCCCccceEEec---------cc
Confidence 2222 122234455688899999999998777653 488899877654211000 00
Q ss_pred CCCCCcccccCCCCCCccccCCCEEEEEeeeCC---------eeEEEEEECCCCcEEEec-CCCC-C-ceeeEEeecCCE
Q 004149 379 EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS---------SQVIISVNVSSGELLRIT-PAES-N-FSWSLLTLDGDN 446 (771)
Q Consensus 379 ~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~---------~~~l~~~d~~tg~~~~l~-~~~~-~-~~~~~~s~d~~~ 446 (771)
...+. ........|++++..+++....++ ...|..+|..+|+..... .... . .....|+|+|+.
T Consensus 339 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 339 -HRHFQ---HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp -CCCCS---SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred -ccccc---cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 00000 001234567888776655543221 124666788888866443 2222 2 233468999987
Q ss_pred EEE
Q 004149 447 IIA 449 (771)
Q Consensus 447 l~~ 449 (771)
|+.
T Consensus 415 las 417 (435)
T 4e54_B 415 LAS 417 (435)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=127.16 Aligned_cols=179 Identities=8% Similarity=0.061 Sum_probs=101.9
Q ss_pred CCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceeecc------CCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004149 195 CNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVK------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 195 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~l~------~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+........|.++....+++ .+..|.+||+. +++...+. -......+..++|+|||.. +++++.
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~----~l~s~~---- 246 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN----TFVYSS---- 246 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT----EEEEEE----
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc----EEEEEe----
Confidence 34445567788885555555 78899999998 34333310 0223446788999999944 444441
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-----ceecCCCCc------------cccceeecCCCCE
Q 004149 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESIS------------SAFFPRFSPDGKF 330 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~------------~~~~p~~SpDG~~ 330 (771)
.+..|.++|+ .+++ ...+..+.. .+....|||||+.
T Consensus 247 ----------~dg~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 299 (447)
T 3dw8_B 247 ----------SKGTIRLCDM-----------------RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY 299 (447)
T ss_dssp ----------TTSCEEEEET-----------------TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE
T ss_pred ----------CCCeEEEEEC-----------------cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE
Confidence 2336888887 4443 244544443 6889999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecc-cccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVV-QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~-~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
|+..+. . .|.+||+.+ +...........+...+ ....... + .....++|+|||+.| ++..
T Consensus 300 l~~~~~-~-----------~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---i--~~~~~~~~s~~~~~l-~s~s 361 (447)
T 3dw8_B 300 MMTRDY-L-----------SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC---I--FDKFECCWNGSDSVV-MTGS 361 (447)
T ss_dssp EEEEES-S-----------EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG---G--GCCCCEEECTTSSEE-EEEC
T ss_pred EEEeeC-C-----------eEEEEeCCCCccccceeeccccccccccccccccc---c--ccceEEEECCCCCEE-EEec
Confidence 886554 2 488899876 43322111110000000 0000000 0 012347899999976 5555
Q ss_pred eCCeeEEEEEECCCCcEEEec
Q 004149 409 WGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.++. |+.+|+.+++...+.
T Consensus 362 ~dg~--v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 362 YNNF--FRMFDRNTKRDITLE 380 (447)
T ss_dssp STTE--EEEEETTTCCEEEEE
T ss_pred cCCE--EEEEEcCCCcceeee
Confidence 5554 555588888876654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-11 Score=128.26 Aligned_cols=289 Identities=14% Similarity=0.103 Sum_probs=169.9
Q ss_pred ccceEEEeCCCCC-eEEEEecCCCCCCeEEEEe---cCCc------ceEEEecCCccccccc-CCCcccceeecCCCCeE
Q 004149 99 TGASAVVPSPSGS-KLLVVRNPENESPIQFELW---SQSQ------LEKEFHVPQTVHGSVY-ADGWFEGISWNSDETLI 167 (771)
Q Consensus 99 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~wSpDg~~l 167 (771)
..+...+|||||+ .||..... +.-.+|.+. ..+. ...........+.... ..+.+.+++|||||+.|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKN--SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETB--TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred CceEEEEECCCCCcEEEEecCC--ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 3578899999999 88876543 333444441 1122 1122221111110000 01134799999999999
Q ss_pred EEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCc------
Q 004149 168 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS------ 241 (771)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~------ 241 (771)
+....+.... .|+ ...........+........|.++....+++.....|.+||+.+++..... ......
T Consensus 124 ~~~~~dg~i~--i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 199 (425)
T 1r5m_A 124 VTGVENGELR--LWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINA 199 (425)
T ss_dssp EEEETTSCEE--EEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------
T ss_pred EEEeCCCeEE--EEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceee
Confidence 9887655322 233 111111112223334446678888666667777889999999888765542 111112
Q ss_pred ---------cceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-cee
Q 004149 242 ---------VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN 311 (771)
Q Consensus 242 ---------~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~ 311 (771)
+..+.|+|++. ++..+ ....|+++|+ .+++ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------~~g~i~~~d~-----------------~~~~~~~~ 242 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDK-----FVIPG---------------PKGAIFVYQI-----------------TEKTPTGK 242 (425)
T ss_dssp ------CCCBSCCEEEETTE-----EEEEC---------------GGGCEEEEET-----------------TCSSCSEE
T ss_pred ccccCCcceeeEEEEcCCCE-----EEEEc---------------CCCeEEEEEc-----------------CCCceeee
Confidence 67889999864 44443 2347889998 4443 445
Q ss_pred cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCC
Q 004149 312 LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 391 (771)
Q Consensus 312 lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~ 391 (771)
+..+...+....|+|||+.|+..+.+. .|.+||+.+++........ ...+
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~-------------------~~~i 292 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDG-----------TLRIWHGGNGNSQNCFYGH-------------------SQSI 292 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTS-----------CEEEECSSSBSCSEEECCC-------------------SSCE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCC-----------EEEEEECCCCccceEecCC-------------------CccE
Confidence 556667788999999999888776542 4888988775542211100 1124
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 392 ~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
..++|+||+ ++++...++ .|..+|+.+++....... ...+....|+++++.|+....+ ..+.+.++.+.
T Consensus 293 ~~~~~~~~~--~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~~~~~~ 362 (425)
T 1r5m_A 293 VSASWVGDD--KVISCSMDG--SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD----GQVNVYDLKKL 362 (425)
T ss_dssp EEEEEETTT--EEEEEETTS--EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT----SCEEEEECHHH
T ss_pred EEEEECCCC--EEEEEeCCC--cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC----CeEEEEECCCC
Confidence 567899999 445555454 455668878776654433 3455667889999877765532 35777776543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-11 Score=124.00 Aligned_cols=270 Identities=12% Similarity=0.099 Sum_probs=158.6
Q ss_pred ccceEEEeCCCC-CeEEEEecCCCCCCeEEEEecCCc-c-eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSG-SKLLVVRNPENESPIQFELWSQSQ-L-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
+.+...+|||++ +.|+..+.. +.-.+|.+..... . ..+..+. +..+ .+..+.|+|||++|+..+.+..
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D--~~v~~W~~~~~~~~~~~~~~~~~-~h~~------~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRD--KTLISWKLTGDDQKFGVPVRSFK-GHSH------IVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETT--SEEEEEEEEEETTEEEEEEEEEE-CCSS------CEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEEEccCCCccEEEEecCC--ccEEEecCCCCCccccccceEEe-CCcc------cEEEEEECCCCCEEEEEeCCCE
Confidence 457889999977 555554433 3223333331111 1 1111111 1111 1268899999999998887664
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC---
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE--- 252 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~--- 252 (771)
.+ .|+............+........|.++....+++..+..|.+||+.+.....+ ......+..+.|+|+++
T Consensus 89 v~--~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 89 LR--LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp EE--EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE--CCCSSCEEEEEECCC-----
T ss_pred EE--EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--eccCCcEEEEEEccCCCCCC
Confidence 43 344322222222223334444566788766667777788999999988777777 44555677889998543
Q ss_pred ---CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCC
Q 004149 253 ---GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 253 ---~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG 328 (771)
. |+..+ .+..|.++|+ ...+ ...+..+...+....|||||
T Consensus 165 ~~~~----l~s~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 165 DSVT----IISAG---------------NDKMVKAWNL-----------------NQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp -CCE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCCSCEEEEEECTTS
T ss_pred CccE----EEEEe---------------CCCEEEEEEC-----------------CcchhheeecCCCCcEEEEEEcCCC
Confidence 3 44333 3346888887 4443 34566667778999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
+.|+..+.+ ..|.+||+.+++........ ..+..++|+||+..|+...
T Consensus 209 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~--------------------~~v~~~~~sp~~~~la~~~- 256 (319)
T 3frx_A 209 TLIASAGKD-----------GEIMLWNLAAKKAMYTLSAQ--------------------DEVFSLAFSPNRYWLAAAT- 256 (319)
T ss_dssp SEEEEEETT-----------CEEEEEETTTTEEEEEEECC--------------------SCEEEEEECSSSSEEEEEE-
T ss_pred CEEEEEeCC-----------CeEEEEECCCCcEEEEecCC--------------------CcEEEEEEcCCCCEEEEEc-
Confidence 998877755 35889998775432110000 1244678999998665443
Q ss_pred eCCeeEEEEEECCCCcEEE-ecCCC--------CCceeeEEeecCCEEEEEEe
Q 004149 409 WGSSQVIISVNVSSGELLR-ITPAE--------SNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~-l~~~~--------~~~~~~~~s~d~~~l~~~~s 452 (771)
.....+|. ++++.... +.... .......|+|||+.|+....
T Consensus 257 -~~~i~v~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 257 -ATGIKVFS--LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp -TTEEEEEE--ETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred -CCCcEEEE--eCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 33445554 44444332 22111 12234688999998876553
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=132.26 Aligned_cols=234 Identities=10% Similarity=0.057 Sum_probs=135.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+...+|||||++||..... +.-.+|.+.. +....+..+. ...+ .+.+++|+|||+.|+..+.+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d--~~i~iw~~~~-~~~~~~~~~~-~h~~------~v~~~~~s~~~~~l~s~s~d------ 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTAT--NQVELYEQDG-NGWKHARTFS-DHDK------IVTCVDWAPKSNRIVTCSQD------ 76 (377)
T ss_dssp CCSCCEECSSSSEEECCCSS--SCBCEEEEET-TEEEECCCBC-CCSS------CEEEEEECTTTCCEEEEETT------
T ss_pred cEEEEEECCCCCEEEEecCC--CEEEEEEccC-CceEEEEEEe-cCCc------eEEEEEEeCCCCEEEEEeCC------
Confidence 47788999999998865432 3344444432 2111211111 1111 23689999999999886533
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCc
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
..|.+||+.+++ ...+ ......+..+.|+|||+.
T Consensus 77 --------------------------------------~~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~-- 114 (377)
T 3dwl_C 77 --------------------------------------RNAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDK-- 114 (377)
T ss_dssp --------------------------------------SSEEEC------CCCCEEEC--CCCSSCEEEEECCTTSSC--
T ss_pred --------------------------------------CeEEEEEcCCCCceeeeeEe--cccCCceEEEEECCCCCE--
Confidence 568899998876 3344 345557889999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceecCC-CCccccceeecCCCCE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTE-SISSAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~lt~-~~~~~~~p~~SpDG~~ 330 (771)
|+..+ ....|.++|+ .+++ ...+.. +...+....|+|||+.
T Consensus 115 --l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 115 --FAVGS---------------GARVISVCYF-----------------EQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp --CEEEE---------------SSSCEEECCC----------------------CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred --EEEEe---------------cCCeEEEEEE-----------------CCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 88776 2336777777 4443 455655 6677899999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccc--------eeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK--------IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
|+..+.+. .|.+||+..++....... .......+ .+...+..++|+|||+.
T Consensus 161 l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 161 LAAGCADR-----------KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----------PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp EEEEESSS-----------CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----------CCSSSEEEEEECTTSSC
T ss_pred EEEEeCCC-----------EEEEEEEEecccCCCccccccccccchhhhhhcc----------cCCceEEEEEECCCCCE
Confidence 98877653 478888764432111000 00111111 01123457789999996
Q ss_pred EEEEeeeCCeeEEEEEECCCCcE-----EEecCCCCCceeeEEeecCCEEEE
Q 004149 403 MLLSSIWGSSQVIISVNVSSGEL-----LRITPAESNFSWSLLTLDGDNIIA 449 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~-----~~l~~~~~~~~~~~~s~d~~~l~~ 449 (771)
|+ +...++...|| |+.+++. ..+......+....|+++++.|+.
T Consensus 220 l~-~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 220 LA-YAGHDSSVTIA--YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA 268 (377)
T ss_dssp EE-EEETTTEEC-C--EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred EE-EEeCCCcEEEE--ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence 64 44555655555 5555553 333333444566788999875543
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-12 Score=143.53 Aligned_cols=222 Identities=14% Similarity=0.097 Sum_probs=131.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHH-HHCCcEEEEECCCCC-CCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRGS-LGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~l-a~~G~~V~~~d~rG~-~~~g~~~~~~~~~~ 591 (771)
+.|.+. ..+|.|......++.|+||++|||++..... .+....... ...|++|+.+|||.. -||+........+
T Consensus 82 ~edcl~--l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~~~- 158 (522)
T 1ukc_A 82 SEDCLF--INVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNG- 158 (522)
T ss_dssp ESCCCE--EEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSS-
T ss_pred CCcCCE--EEEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccccC-
Confidence 344544 4678887544456789999999998765432 232221111 256999999999942 2232211111011
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhC----CCceeEEEecCCccchhhhhcCCCCCc
Q 004149 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPD 664 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~~~~~~~~~~~~~~~ 664 (771)
.+...+.|+.++++|+.++. ..|++||.|+|+|.||.++..++... +.+|+++|+.+|....... .....
T Consensus 159 ~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~---~~~~~ 235 (522)
T 1ukc_A 159 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRT---VSEME 235 (522)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCC---SGGGH
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCC---HHHHH
Confidence 12345889999999998862 36899999999999999888776643 5689999999986532110 00000
Q ss_pred c---hhhhhccCCCCCcCCCCCChhhHHHHhhcCcccc---------ccCCCCc--EEEEeeCCCCccCcHHHHHHHHHH
Q 004149 665 W---CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH---------ISKVKTP--TIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 665 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---------~~~i~~P--~Lii~G~~D~~vp~~~~~~~~~~l 730 (771)
+ .+....++. ...+..+.++..++... ......| .+..++..|..+.+++..++.+..
T Consensus 236 ~~~~~~~~~~gc~--------~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g 307 (522)
T 1ukc_A 236 FQFERFVNDTGCS--------SARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAG 307 (522)
T ss_dssp HHHHHHHHHTTCT--------TCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHT
T ss_pred HHHHHHHHHcCCC--------CHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcC
Confidence 0 111222221 01112222332222111 1112233 455677778777777777777766
Q ss_pred HhCCCCEEEEEeCCCCccCC
Q 004149 731 REKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~ 750 (771)
+..++++-+-...+++|.+.
T Consensus 308 ~~~~vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 308 NFIKVPVLVGDDTDEGSNFA 327 (522)
T ss_dssp CSCCCCEEEEEETBGGGGTS
T ss_pred CCCCCCEEEEeecchhHHhh
Confidence 55667777778888899775
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=150.35 Aligned_cols=272 Identities=11% Similarity=-0.010 Sum_probs=165.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.+...+|||+|+.+++....+ . +...+ ..+....... ...+ .+.+++|||||+.|+..+.+....
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g--~--i~i~d~~~~~~~~~~~---~h~~------~v~~l~~s~dg~~l~s~~~dg~i~- 1028 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDG--A--IKIIELPNNRVFSSGV---GHKK------AVRHIQFTADGKTLISSSEDSVIQ- 1028 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTS--C--CEEEETTTTSCEEECC---CCSS------CCCCEEECSSSSCEEEECSSSBEE-
T ss_pred cEEEEEEcCCCCEEEEEcCCC--C--EEEEEcCCCceeeecc---cCCC------ceEEEEECCCCCEEEEEcCCCEEE-
Confidence 467789999999998876543 2 33223 2333222221 1111 226899999999999887655322
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.|+....... ....+......+.|.++ +..+++.....|.+||+.+++..... ......+..++|||||+. |
T Consensus 1029 -vwd~~~~~~~-~~~~~~~~v~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~----l 1100 (1249)
T 3sfz_A 1029 -VWNWQTGDYV-FLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATK----F 1100 (1249)
T ss_dssp -EEETTTTEEE-CCBCCSSCEEEEEECSS-SEEEEEESSSEEEEEETTTTCCCEEE-ECCSSCCCCEEECSSSSS----C
T ss_pred -EEECCCCceE-EEecCCCcEEEEEEcCC-CcEEEEECCCcEEEEECCCCceeEEE-cccCCcEEEEEECCCCCE----E
Confidence 2332211111 11122223334556665 45566667789999999988754431 234456788999999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+..+ .+..|.++|+ .++ ....+..+...+...+|||||+.|+..+.+
T Consensus 1101 ~s~s---------------~d~~v~iwd~-----------------~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1101 SSTS---------------ADKTAKIWSF-----------------DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp EEEC---------------CSSCCCEECS-----------------SSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEEc---------------CCCcEEEEEC-----------------CCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence 8766 2336777787 333 445666667778999999999999887765
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||+.+++.......... ..... .+...+..++|||||+.|+... + .+..
T Consensus 1149 g-----------~i~vwd~~~~~~~~~~~~~~~---------~~~~~-~~~~~v~~l~fs~dg~~l~s~~---g--~v~v 1202 (1249)
T 3sfz_A 1149 G-----------EIRIWNVSDGQLLHSCAPISV---------EEGTA-THGGWVTDVCFSPDSKTLVSAG---G--YLKW 1202 (1249)
T ss_dssp S-----------CCCEEESSSSCCCCCCCCCC-----------------CCSCCCEEEECTTSSCEEEES---S--SEEE
T ss_pred C-----------EEEEEECCCCceEEEeccccc---------ccccc-ccCceEEEEEECCCCCEEEECC---C--eEEE
Confidence 3 488899888765332111000 00000 0122466789999999775442 3 4556
Q ss_pred EECCCCcEEEecC-CCCCceeeEEeecCCEEEEEE
Q 004149 418 VNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 418 ~d~~tg~~~~l~~-~~~~~~~~~~s~d~~~l~~~~ 451 (771)
+|+.+|+...... ....+....|++|++.++...
T Consensus 1203 wd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1203 WNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp BCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEEC
T ss_pred EECCCCceeeeeeccCCcccEEEECCCCCEEEEec
Confidence 6777776544332 233445578999998777644
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-10 Score=122.62 Aligned_cols=248 Identities=11% Similarity=0.065 Sum_probs=138.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...+|||+|+.++..+... .+.+|+ .++..+.+.. ... +.+++|||||+.|+..+.+..
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~h~~~----------v~~v~~sp~~~~l~s~~~d~~ 141 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDK-----TLRLWDLRTGTTYKRFVGHQSE----------VYSVAFSPDNRQILSAGAERE 141 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTS-----EEEEEETTSSCEEEEEECCCSC----------EEEEEECSSTTEEEEEETTSC
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEcCCCCc----------EEEEEECCCCCEEEEEcCCCE
Confidence 4578899999999998765543 566773 3333322221 222 268999999999998876654
Q ss_pred CCCCCccCCCCCC--CCCCccCCCCCCcccccCCc----------CcccCCccCceEEEEEccCCceeeccCCCCCCccc
Q 004149 176 PSKPTFSLGSTKG--GSSDKDCNSWKGQGDWEEDW----------GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 243 (771)
Q Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~----------g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~ 243 (771)
.+ .|+...... ......+..+.....|.++. ...+++.....|.+||........+ ......+.
T Consensus 142 i~--~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~h~~~v~ 217 (343)
T 2xzm_R 142 IK--LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF--KAHESNVN 217 (343)
T ss_dssp EE--EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE--ECCSSCEE
T ss_pred EE--EEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE--cCccccce
Confidence 33 333211000 00111223333344555553 2234445568899999654444444 33445688
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccccee
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPR 323 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~ 323 (771)
.++|+|||+. |+..+ .+..|.++|+. ..............+...+
T Consensus 218 ~~~~s~~g~~----l~sgs---------------~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~v~ 262 (343)
T 2xzm_R 218 HLSISPNGKY----IATGG---------------KDKKLLIWDIL----------------NLTYPQREFDAGSTINQIA 262 (343)
T ss_dssp EEEECTTSSE----EEEEE---------------TTCEEEEEESS----------------CCSSCSEEEECSSCEEEEE
T ss_pred EEEECCCCCE----EEEEc---------------CCCeEEEEECC----------------CCcccceeecCCCcEEEEE
Confidence 8999999997 77665 33468888861 1222222222334578899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l 403 (771)
|||||+.|+.. .+ ..|.+||+.++....+..-. ...+... ....+ +...+..++|+|||+.|
T Consensus 263 ~sp~~~~la~~-~d-----------~~v~iw~~~~~~~~~~~~~~--~~~~~~~---~~~~~-~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 263 FNPKLQWVAVG-TD-----------QGVKIFNLMTQSKAPVCTIE--AEPITKA---EGQKG-KNPQCTSLAWNALGKKL 324 (343)
T ss_dssp ECSSSCEEEEE-ES-----------SCEEEEESSSCCSCSEEECC--CCSGGGB---TTBCC-SCCCEEEEEECSSSCCE
T ss_pred ECCCCCEEEEE-CC-----------CCEEEEEeCCCCCCceEEee--cCcchhh---hhhcC-CCCceEEEEECCCCCeE
Confidence 99999877543 33 23788888776543210000 0000000 00000 11124567899999866
Q ss_pred EEEeeeCCeeEEEEEE
Q 004149 404 LLSSIWGSSQVIISVN 419 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d 419 (771)
++...++...+|.++
T Consensus 325 -~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 325 -FAGFTDGVIRTFSFE 339 (343)
T ss_dssp -EEEETTSEEEEEEEE
T ss_pred -EEecCCceEEEEEEE
Confidence 555667777777654
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-12 Score=132.17 Aligned_cols=215 Identities=14% Similarity=0.083 Sum_probs=124.7
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-ch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~-~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+...++.|.... .+..+.||++||...+. .. |. .....|+++||.|+++|+||. |... .....
T Consensus 15 ~l~~~i~~p~~~~-~~~~~~VvllHG~~~~~--~~~~~~~l~~~L~~~G~~v~~~d~~g~---g~~~--------~~~~~ 80 (317)
T 1tca_A 15 VLDAGLTCQGASP-SSVSKPILLVPGTGTTG--PQSFDSNWIPLSTQLGYTPCWISPPPF---MLND--------TQVNT 80 (317)
T ss_dssp HHHHTEEETTBCT-TSCSSEEEEECCTTCCH--HHHHTTTHHHHHHTTTCEEEEECCTTT---TCSC--------HHHHH
T ss_pred HHhheeeCCCCCC-CCCCCeEEEECCCCCCc--chhhHHHHHHHHHhCCCEEEEECCCCC---CCCc--------HHHHH
Confidence 3445577776543 23446799999976542 22 55 677889899999999999983 3211 01235
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
+++.+.++++.+.. +.+++.|+||||||.++..++..++ ++++++|+.+|.......... ...+...
T Consensus 81 ~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~--------~~~~~~~ 150 (317)
T 1tca_A 81 EYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGP--------LDALAVS 150 (317)
T ss_dssp HHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHH--------HHHTTCB
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhh--------hhhhhhc
Confidence 67788888887763 3478999999999999999888765 789999999886532211100 0000000
Q ss_pred CCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHH--HHHHHHHHHhCCCCEEEEEe-------CCC
Q 004149 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN--GLQYARALREKGVETKVIVF-------PND 745 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~--~~~~~~~l~~~g~~~~~~~~-------~~~ 745 (771)
................+.... .....+|+++++|+.|.+|++.. +......+.. .+.+.+ ++.
T Consensus 151 ~~~~~~~~~~s~f~~~L~~~~----~~~~~vp~~~i~g~~D~iV~p~~~~g~~~~~~l~~----a~~~~~~~~~~~~~~~ 222 (317)
T 1tca_A 151 APSVWQQTTGSALTTALRNAG----GLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLFN----GKNVQAQAVCGPLFVI 222 (317)
T ss_dssp CHHHHHTBTTCHHHHHHHHTT----TTBCSSCEEEEECTTCSSSCCCCSSSTTSTTCCBT----SEEEEHHHHHCTTCCC
T ss_pred CchHHhhCcCcHHHHHHHhcC----CCCCCCCEEEEEeCCCCeECCccccccchhhhccC----CccEEeeeccCCCCcc
Confidence 000000000001111111110 01236899999999999998765 2111111211 122222 477
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004149 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+|.... .+ .+.+..+++||+.
T Consensus 223 gH~~~l-~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 223 DHAGSL-TS-QFSYVVGRSALRS 243 (317)
T ss_dssp CTTHHH-HB-HHHHHHHHHHHHC
T ss_pred Cccccc-CC-HHHHHHHHHHhcC
Confidence 896432 22 3467788888874
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-10 Score=121.45 Aligned_cols=273 Identities=14% Similarity=0.110 Sum_probs=163.4
Q ss_pred EEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcce
Q 004149 59 SISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLE 136 (771)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~ 136 (771)
.++...+......+.+.+|++..+ ...++.... ....+...+|||||+.|+.....+ .+.+| ..++..
T Consensus 100 ~~s~~~l~~~~~d~~v~lw~~~~~--~~~~~~~~~---~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 169 (401)
T 4aez_A 100 DWSNLNVVAVALERNVYVWNADSG--SVSALAETD---ESTYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTKL 169 (401)
T ss_dssp EECTTSEEEEEETTEEEEEETTTC--CEEEEEECC---TTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEE
T ss_pred eecCCCEEEEECCCeEEEeeCCCC--cEeEeeecC---CCCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCCeEE
Confidence 333333334444567888776433 333322221 124588999999999998876543 34555 233333
Q ss_pred EEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCcc
Q 004149 137 KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 216 (771)
Q Consensus 137 ~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~ 216 (771)
+.... ..+ .+.+++| +++.|+..+.
T Consensus 170 ~~~~~---~~~------~v~~~~~--~~~~l~~~~~-------------------------------------------- 194 (401)
T 4aez_A 170 RTMAG---HQA------RVGCLSW--NRHVLSSGSR-------------------------------------------- 194 (401)
T ss_dssp EEECC---CSS------CEEEEEE--ETTEEEEEET--------------------------------------------
T ss_pred EEecC---CCC------ceEEEEE--CCCEEEEEcC--------------------------------------------
Confidence 33221 111 1257788 5666666432
Q ss_pred CceEEEEEccC-Cc-eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 217 QPSLFVININS-GE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 217 ~~~l~v~d~~~-~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
...|.+||+.. +. ...+ ......+..+.|+|||+. |+..+ .+..|.++|+
T Consensus 195 dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~s~~---------------~d~~v~iwd~------- 246 (401)
T 4aez_A 195 SGAIHHHDVRIANHQIGTL--QGHSSEVCGLAWRSDGLQ----LASGG---------------NDNVVQIWDA------- 246 (401)
T ss_dssp TSEEEEEETTSSSCEEEEE--ECCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-------
T ss_pred CCCEEEEecccCcceeeEE--cCCCCCeeEEEEcCCCCE----EEEEe---------------CCCeEEEccC-------
Confidence 36889999974 33 3334 344557888999999987 77665 2347888998
Q ss_pred hhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 295 SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 295 ~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
.+++ ...+..+...+....|+|+|+.++...... ....|.+||+.+++.....
T Consensus 247 ----------~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs--------~d~~i~i~d~~~~~~~~~~-------- 300 (401)
T 4aez_A 247 ----------RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT--------MDKQIHFWNAATGARVNTV-------- 300 (401)
T ss_dssp ----------TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT--------TTCEEEEEETTTCCEEEEE--------
T ss_pred ----------CCCCccEEecCCcceEEEEEECCCCCCEEEEecCC--------CCCEEEEEECCCCCEEEEE--------
Confidence 4444 445666677789999999998887765311 1246999998876542111
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEee-eCCeeEEEEEECCCCcEEEe---cCCCCCceeeEEeecCCEEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNIIA 449 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s~d~~~l~~ 449 (771)
.. ...+..++|+||++.|+.+.. .++...+| ++.+++...+ ......+....|+++++.|+.
T Consensus 301 --~~----------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~--~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 301 --DA----------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIW--SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp --EC----------SSCEEEEEECSSSSEEEEEECTTTCEEEEE--EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred --eC----------CCcEEEEEECCCCCeEEEEeecCCCcEEEE--ecCCccceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence 00 012457789999997766542 45555555 4446554443 333344566789999987765
Q ss_pred EEeCCCCCCeEEEEEeccc
Q 004149 450 VSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 450 ~~s~~~~p~~l~~~~~~~~ 468 (771)
...+ ..|.+.++.++
T Consensus 367 ~~~d----g~i~iw~~~~~ 381 (401)
T 4aez_A 367 AASD----ENLKFWRVYDG 381 (401)
T ss_dssp ECTT----SEEEEEECCC-
T ss_pred EeCC----CcEEEEECCCC
Confidence 5432 35667666544
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.4e-11 Score=124.65 Aligned_cols=261 Identities=13% Similarity=0.048 Sum_probs=147.9
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----cceEEEecCC
Q 004149 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVPQ 143 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 143 (771)
...+.+.+|+..... ....+... ...+...+|||||+.+|.....+ ...+|.+.... ..........
T Consensus 83 s~Dg~v~vWd~~~~~-~~~~~~~~-----~~~v~~~~~sp~g~~lasg~~d~--~i~v~~~~~~~~~~~~~~~~~~~~h~ 154 (354)
T 2pbi_B 83 SQDGKVIVWDSFTTN-KEHAVTMP-----CTWVMACAYAPSGCAIACGGLDN--KCSVYPLTFDKNENMAAKKKSVAMHT 154 (354)
T ss_dssp ETTSEEEEEETTTCC-EEEEEECS-----SSCCCEEEECTTSSEEEEESTTS--EEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred eCCCeEEEEECCCCC-cceEEecC-----CCCEEEEEECCCCCEEEEeeCCC--CEEEEEEeccccccccccceeeeccC
Confidence 445677777753221 12222211 14578899999999998764432 22233322110 1111221111
Q ss_pred cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC--CcCcccCCccCceEE
Q 004149 144 TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE--DWGETYAGKRQPSLF 221 (771)
Q Consensus 144 ~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~g~~~~~~~~~~l~ 221 (771)
+.+..++|+||++.|+..+.+...+ .|+............+........+.+ +....+++..+..|.
T Consensus 155 ---------~~v~~~~~~~~~~~l~t~s~D~~v~--lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~ 223 (354)
T 2pbi_B 155 ---------NYLSACSFTNSDMQILTASGDGTCA--LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223 (354)
T ss_dssp ---------SCEEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEE
T ss_pred ---------CcEEEEEEeCCCCEEEEEeCCCcEE--EEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEE
Confidence 1236899999999999887765432 343322211111112222222233433 333455566678999
Q ss_pred EEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhc
Q 004149 222 VININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKE 301 (771)
Q Consensus 222 v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 301 (771)
+||+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 224 ~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~----l~s~s---------------~D~~v~lwd~-------------- 269 (354)
T 2pbi_B 224 VWDMRSGQCVQAF-ETHESDVNSVRYYPSGDA----FASGS---------------DDATCRLYDL-------------- 269 (354)
T ss_dssp EEETTTCCEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET--------------
T ss_pred EEECCCCcEEEEe-cCCCCCeEEEEEeCCCCE----EEEEe---------------CCCeEEEEEC--------------
Confidence 9999988765541 334556889999999987 77665 2336778887
Q ss_pred CCCCCCcc-eecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc
Q 004149 302 SSSEDLPV-VNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA 378 (771)
Q Consensus 302 ~~~~~~~~-~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 378 (771)
..+.. ..+... ...+....|||||+.|+..+.+ ..|.+||+.++.......+
T Consensus 270 ---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-----------~~i~vwd~~~~~~~~~l~~----------- 324 (354)
T 2pbi_B 270 ---RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-----------YTINVWDVLKGSRVSILFG----------- 324 (354)
T ss_dssp ---TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCSEEEEECC-----------
T ss_pred ---CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-----------CcEEEEECCCCceEEEEEC-----------
Confidence 33332 222222 2246788999999988776654 3588999876553211000
Q ss_pred CCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 379 EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 379 ~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+...+..++|+|||+.| ++.+.++...||
T Consensus 325 --------h~~~v~~l~~spdg~~l-~sgs~D~~v~vW 353 (354)
T 2pbi_B 325 --------HENRVSTLRVSPDGTAF-CSGSWDHTLRVW 353 (354)
T ss_dssp --------CSSCEEEEEECTTSSCE-EEEETTSEEEEE
T ss_pred --------CCCcEEEEEECCCCCEE-EEEcCCCCEEec
Confidence 11134567899999855 566667777776
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-11 Score=141.99 Aligned_cols=263 Identities=9% Similarity=0.023 Sum_probs=162.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++||+....+ .+.+|+ .+...+...... + .+.++.|||||++|+..+.+...
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~~~---~------~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVEIWNYETQVEVRSIQVTE---T------PVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCS---S------CEEEEEEEGGGTEEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEEecCC---C------cEEEEEEeCCCCEEEEEeCCCeE
Confidence 4588899999999999876543 556663 333333333211 1 12699999999999998775432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC-ceeeccCCCCCCccceEEEec-CCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAP-LNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-~~~~l~~~~~~~~~~~~~wsp-Dg~~~ 254 (771)
. .|+............+........|+++....+++.....|.+||+.++ ...... ......+..+.|+| |++.
T Consensus 80 ~--vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~- 155 (814)
T 3mkq_A 80 R--VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPST- 155 (814)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE-ECCSSCEEEEEEETTEEEE-
T ss_pred E--EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE-cCCCCcEEEEEEEcCCCCE-
Confidence 2 3333222222222234444456778888666667777889999999887 333331 33445688899999 7776
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCC-CccccceeecC--CCCE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTES-ISSAFFPRFSP--DGKF 330 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~-~~~~~~p~~Sp--DG~~ 330 (771)
|+..+ ....|+++|+ .++. ...+... ...+..+.|+| ||+.
T Consensus 156 ---l~~~~---------------~dg~v~vwd~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (814)
T 3mkq_A 156 ---FASGC---------------LDRTVKVWSL-----------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (814)
T ss_dssp ---EEEEE---------------TTSEEEEEET-----------------TCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred ---EEEEe---------------CCCeEEEEEC-----------------CCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence 66654 3347888887 3333 3333333 35688899999 9998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|+..+.+ ..|.+||+.+++.... +.. +...+..++|+|||+.|+ +...+
T Consensus 201 l~~~~~d-----------g~i~~~d~~~~~~~~~----------~~~---------~~~~v~~~~~~~~~~~l~-~~~~d 249 (814)
T 3mkq_A 201 MITASDD-----------LTIKIWDYQTKSCVAT----------LEG---------HMSNVSFAVFHPTLPIII-SGSED 249 (814)
T ss_dssp EEEECTT-----------SEEEEEETTTTEEEEE----------EEC---------CSSCEEEEEECSSSSEEE-EEETT
T ss_pred EEEEeCC-----------CEEEEEECCCCcEEEE----------EcC---------CCCCEEEEEEcCCCCEEE-EEeCC
Confidence 8876654 3588899876543111 100 011245678999998554 44445
Q ss_pred CeeEEEEEECCCCcEEEecC-CCCCceeeEEeecCCEE
Q 004149 411 SSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNI 447 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~d~~~l 447 (771)
+.. ..+|+.+++...... ....+....+++++..+
T Consensus 250 g~v--~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 250 GTL--KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp SCE--EEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred CeE--EEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 554 445787777654433 33345556778887754
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-12 Score=127.58 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
...+.||++||.+.. ...|...+..|+ .+|.|+++|+|| +|.+.. ...+|+.+.++.+.+.-.+.
T Consensus 11 ~~~~~lv~lhg~g~~--~~~~~~~~~~L~-~~~~vi~~Dl~G---hG~S~~---------~~~~~~~~~~~~~~~~l~~~ 75 (242)
T 2k2q_B 11 SEKTQLICFPFAGGY--SASFRPLHAFLQ-GECEMLAAEPPG---HGTNQT---------SAIEDLEELTDLYKQELNLR 75 (242)
T ss_dssp TCCCEEESSCCCCHH--HHHHHHHHHHHC-CSCCCEEEECCS---SCCSCC---------CTTTHHHHHHHHTTTTCCCC
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHhCC-CCeEEEEEeCCC---CCCCCC---------CCcCCHHHHHHHHHHHHHhh
Confidence 345679999996654 346777777775 479999999999 444311 12456666666655432222
Q ss_pred -CCeEEEEEcChhHHHHHHHHHh------CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC-CCC-Cc------C
Q 004149 615 -PSKVTVVGGSHGGFLTTHLIGQ------APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS-KGK-DS------F 679 (771)
Q Consensus 615 -~~ri~l~G~S~GG~~a~~~a~~------~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~------~ 679 (771)
.+++.|+||||||.+|+.+|.+ +|+.+-......|...... ........+...+.. ... .. .
T Consensus 76 ~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (242)
T 2k2q_B 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKK---VSHLPDDQFLDHIIQLGGMPAELVENKEV 152 (242)
T ss_dssp CCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCC---CSSCTTHHHHHTTCCTTCCCCTTTHHHHT
T ss_pred cCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCccc---ccCCCHHHHHHHHHHhCCCChHHhcCHHH
Confidence 2689999999999999999976 5665321111111111000 000000000000000 000 00 0
Q ss_pred CC--CCC-hhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004149 680 TE--SPS-VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 680 ~~--~~~-~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
.. .+. ............ ..+.++++|+|+++|++|..++ ..... +.+.-...+++++++ ||..... ...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~G~~D~~~~-~~~~~----~~~~~~~~~~~~~~~-gH~~~~e-~p~ 224 (242)
T 2k2q_B 153 MSFFLPSFRSDYRALEQFEL-YDLAQIQSPVHVFNGLDDKKCI-RDAEG----WKKWAKDITFHQFDG-GHMFLLS-QTE 224 (242)
T ss_dssp TTTCCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEEECSSCCHH-HHHHH----HHTTCCCSEEEEEEC-CCSHHHH-HCH
T ss_pred HHHHHHHHHHHHHHHHhccc-CCCCccCCCEEEEeeCCCCcCH-HHHHH----HHHHhcCCeEEEEeC-CceeEcC-CHH
Confidence 00 000 011111111111 1256789999999999998864 22222 333222345777775 8976533 345
Q ss_pred HHHHHHHHHHHH
Q 004149 757 ESFLNIGLWFKK 768 (771)
Q Consensus 757 ~~~~~i~~wl~~ 768 (771)
++.+.+.+||++
T Consensus 225 ~~~~~i~~fl~~ 236 (242)
T 2k2q_B 225 EVAERIFAILNQ 236 (242)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 778889999875
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=123.31 Aligned_cols=211 Identities=13% Similarity=0.061 Sum_probs=113.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.+..+.||++||++.. ...|...+. | ..+|.|+++|+||. +.+.. . ...++++.+.+..+++.. .
T Consensus 18 ~~~~~~lv~lhg~~~~--~~~~~~~~~-l-~~~~~v~~~d~~G~---~~~~~---~----~~~~~~~~~~~~~~i~~~-~ 82 (265)
T 3ils_A 18 MVARKTLFMLPDGGGS--AFSYASLPR-L-KSDTAVVGLNCPYA---RDPEN---M----NCTHGAMIESFCNEIRRR-Q 82 (265)
T ss_dssp TTSSEEEEEECCTTCC--GGGGTTSCC-C-SSSEEEEEEECTTT---TCGGG---C----CCCHHHHHHHHHHHHHHH-C
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHh-c-CCCCEEEEEECCCC---CCCCC---C----CCCHHHHHHHHHHHHHHh-C
Confidence 3456889999997765 335655555 5 67899999999994 22210 1 123444433332222221 1
Q ss_pred CCCeEEEEEcChhHHHHHHHHH---hCCCceeEEEecCCccchhhhhcCCCCCc--chhhhhccCCCC----C--cCCCC
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLCNLALMVGTTDIPD--WCYVESYGSKGK----D--SFTES 682 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~---~~p~~~~a~v~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~--~~~~~ 682 (771)
...++.|+||||||.+++.++. .+++.++++|+.++...... ...+. ..+......... . .-...
T Consensus 83 ~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (265)
T 3ils_A 83 PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAM----EQLPRAFYEHCNSIGLFATQPGASPDGSTEP 158 (265)
T ss_dssp SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCC----CCCCHHHHHHHHHTTTTTTSSSSCSSSCSCC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcc----cccCHHHHHHHHHHHHhCCCccccccCCHHH
Confidence 2358999999999999999987 66888999888876432100 00000 000111000000 0 00000
Q ss_pred CCh------hhHHHHhhcCccccccCCCCcEE-EEeeCC---CCccC--------------cHHHHHHHHHHHhCCCCEE
Q 004149 683 PSV------EDLTRFHSKSPISHISKVKTPTI-FLLGAQ---DLRVP--------------VSNGLQYARALREKGVETK 738 (771)
Q Consensus 683 ~~~------~~~~~~~~~sp~~~~~~i~~P~L-ii~G~~---D~~vp--------------~~~~~~~~~~l~~~g~~~~ 738 (771)
... .+......+.+ ....++++|++ +++|++ |..++ ......+.+.+. +.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~ 235 (265)
T 3ils_A 159 PSYLIPHFTAVVDVMLDYKL-APLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIMP--GASFD 235 (265)
T ss_dssp CTTHHHHHHHHHHHTTTCCC-CCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHST--TCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhCC--cccee
Confidence 000 00111111111 12346889977 999999 99883 332233333222 13689
Q ss_pred EEEeCCCCccCCC-CCChHHHHHHHHHHH
Q 004149 739 VIVFPNDVHGIER-PQSDFESFLNIGLWF 766 (771)
Q Consensus 739 ~~~~~~~~H~~~~-~~~~~~~~~~i~~wl 766 (771)
+++++++||.+.. .+...++.+.|.+||
T Consensus 236 ~~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 236 IVRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp EEEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred EEEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 9999999997662 334445555555554
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=120.29 Aligned_cols=273 Identities=13% Similarity=0.064 Sum_probs=155.2
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|+... ..+.+.+|++... .....+.. ....+...+|||||+.|+.....+ .+.
T Consensus 31 ~s~~~~~l~s~~---------~dg~i~iw~~~~~-~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~-----~i~ 90 (312)
T 4ery_A 31 FSPNGEWLASSS---------ADKLIKIWGAYDG-KFEKTISG-----HKLGISDVAWSSDSNLLVSASDDK-----TLK 90 (312)
T ss_dssp ECTTSSEEEEEE---------TTSCEEEEETTTC-CEEEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----EEE
T ss_pred ECCCCCEEEEee---------CCCeEEEEeCCCc-ccchhhcc-----CCCceEEEEEcCCCCEEEEECCCC-----EEE
Confidence 356777766543 2345666655322 11122211 124578899999999998876543 556
Q ss_pred Eec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004149 129 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+|+ .++....+..... .+..+.|+||++.|+..+.+...+ .|+............+........|.+
T Consensus 91 vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~i~--iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFDESVR--IWDVKTGKCLKTLPAHSDPVSAVHFNR 159 (312)
T ss_dssp EEETTTCCEEEEEECCSS---------CEEEEEECSSSSEEEEEETTSCEE--EEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEECCCCcEEEEEcCCCC---------CEEEEEEcCCCCEEEEEeCCCcEE--EEECCCCEEEEEecCCCCcEEEEEEcC
Confidence 663 3333333322111 125889999999998887665432 333222211111222233334566788
Q ss_pred CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004149 207 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
+....+++.....|.+||+.+++............+..+.|+|||+. |+..+ .+..|.++|
T Consensus 160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iwd 220 (312)
T 4ery_A 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY----ILAAT---------------LDNTLKLWD 220 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE----EEEEE---------------TTTEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE----EEEEc---------------CCCeEEEEE
Confidence 76666667778899999998877543311223345677899999997 77665 234788888
Q ss_pred cccccchhhhhhhhcCCCCCCc-ceecCCCCcc--ccceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 287 VSLYKSEASELELKESSSEDLP-VVNLTESISS--AFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~--~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
+ ..++ ...+..+... .....|+ ++|+.|+..+.+ ..|++||+.+++..
T Consensus 221 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~~~~ 272 (312)
T 4ery_A 221 Y-----------------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED-----------NLVYIWNLQTKEIV 272 (312)
T ss_dssp T-----------------TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT-----------SCEEEEETTTCCEE
T ss_pred C-----------------CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC-----------CEEEEEECCCchhh
Confidence 7 4444 3334333222 2233455 567766654433 35899998876532
Q ss_pred CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee-eCCeeEEEEE
Q 004149 363 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISV 418 (771)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~l~~~ 418 (771)
....+. ...+..++|+|++..|+..+. .++...+|..
T Consensus 273 ~~~~~h-------------------~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 273 QKLQGH-------------------TDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEECCC-------------------SSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhhcc-------------------CCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 111110 012346789999986654432 4566777754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=130.82 Aligned_cols=292 Identities=15% Similarity=0.145 Sum_probs=163.9
Q ss_pred cceEEEeCCCCCeEEEEecCCC------CCCeEEEEe--cCCcce-EEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 100 GASAVVPSPSGSKLLVVRNPEN------ESPIQFELW--SQSQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~------~~~~~~~~~--~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+...+|||||+.++++....+ .....+.+| ..+... .+.... . ...+.+++|||||+.|+..
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~--~------~~~v~~~~~s~~~~~l~~~ 85 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ--V------DSKFNDLDWSHNNKIIAGA 85 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC--C------SSCEEEEEECSSSSCEEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe--c------CCceEEEEECCCCCeEEEE
Confidence 3667899999995555542221 112233344 222211 111111 1 1223699999999999988
Q ss_pred ecCCCCCCCCccCCCC----CCCCCCccCCCCCCcccccCC-cCcccCCccCceEEEEEccCCc------eeecc--CCC
Q 004149 171 AEEPSPSKPTFSLGST----KGGSSDKDCNSWKGQGDWEED-WGETYAGKRQPSLFVININSGE------VQAVK--GIP 237 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d-~g~~~~~~~~~~l~v~d~~~~~------~~~l~--~~~ 237 (771)
+.+.... .|+.... ........+........|.++ ....+++.....|++||+.+++ ..... ...
T Consensus 86 ~~dg~v~--vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 86 LDNGSLE--LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp ESSSCEE--EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred ccCCeEE--EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence 7665432 3332221 111222334455566778888 4445556667899999998876 22110 012
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC-
Q 004149 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES- 315 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~- 315 (771)
....+..+.|+||+.. +++++. ....|.++|+ .+++. ..+...
T Consensus 164 ~~~~v~~~~~~~~~~~----~l~~~~--------------~dg~v~iwd~-----------------~~~~~~~~~~~~~ 208 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAH----VFASAG--------------SSNFASIWDL-----------------KAKKEVIHLSYTS 208 (416)
T ss_dssp SSCCCCEEEECSSCTT----EEEEES--------------SSSCEEEEET-----------------TTTEEEEEECCCC
T ss_pred CCCCeeEEEeCCCCCc----EEEEEc--------------CCCCEEEEEC-----------------CCCCcceEEeccc
Confidence 3446789999999665 666542 2346888887 44443 334333
Q ss_pred -----CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCcc-ceeeEEecccccCCCCCccccc
Q 004149 316 -----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLE-KIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 316 -----~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
...+....|+|||+.+++....+ | ....|.+||+.++.. ..... .. .
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~---~~~~i~~~d~~~~~~~~~~~~~~~-------------------~ 262 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGS----D---NDPSILIWDLRNANTPLQTLNQGH-------------------Q 262 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECC----S---SSCCCCEEETTSTTSCSBCCCSCC-------------------S
T ss_pred cccccCCceEEEEECCCCCCEEEEEECC----C---CCceEEEEeCCCCCCCcEEeecCc-------------------c
Confidence 45688999999986444444332 1 123688999887532 11111 10 1
Q ss_pred CCCCCCcccc-CCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 389 SSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 389 ~~~~~~~~s~-dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
..+..++|+| |++.| ++...++. |..+|+.+++... +......+....|++++..++++.+. -..+.+.++.
T Consensus 263 ~~v~~~~~s~~~~~~l-~s~~~dg~--v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~ 336 (416)
T 2pm9_A 263 KGILSLDWCHQDEHLL-LSSGRDNT--VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQ 336 (416)
T ss_dssp SCEEEEEECSSCSSCE-EEEESSSE--EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESC
T ss_pred CceeEEEeCCCCCCeE-EEEeCCCC--EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEcc
Confidence 1345678999 77644 55555555 4455777776544 44334445667899998444444432 2346666665
Q ss_pred cc
Q 004149 467 DK 468 (771)
Q Consensus 467 ~~ 468 (771)
..
T Consensus 337 ~~ 338 (416)
T 2pm9_A 337 NL 338 (416)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-10 Score=120.91 Aligned_cols=293 Identities=9% Similarity=0.014 Sum_probs=157.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCC---CCeEEEEecCCCCCCe
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS---GSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPd---G~~la~~~~~~~~~~~ 125 (771)
.+|||..++.+.+.. ...+.+.+|++.... ...+.... ....+...+|+|+ |+.|+.....+
T Consensus 26 ~~p~~~~l~~~~s~~-----~~d~~v~iw~~~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg----- 90 (357)
T 3i2n_A 26 WVPCSAKFVTMGNFA-----RGTGVIQLYEIQHGD--LKLLREIE---KAKPIKCGTFGATSLQQRYLATGDFGG----- 90 (357)
T ss_dssp ECTTSSEEEEEEC-------CCCEEEEEEEECSSS--EEEEEEEE---ESSCEEEEECTTCCTTTCCEEEEETTS-----
T ss_pred EcCCCceEEEecCcc-----CCCcEEEEEeCCCCc--ccceeeec---ccCcEEEEEEcCCCCCCceEEEecCCC-----
Confidence 367787666554321 024677777775432 22121111 1245888999999 68887765443
Q ss_pred EEEEe--cCCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC-CCCCCccCC----C
Q 004149 126 QFELW--SQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK-GGSSDKDCN----S 197 (771)
Q Consensus 126 ~~~~~--~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~ 197 (771)
.+.+| ..++ ........ .+.+..-.+...++|||||+.|+..+.+.... .|+..... ......... .
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~--vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGH---KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK--VWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp CEEEECTTSCSSCSEEECCC---SSCEEEEEEESGGGCC-CCCEEEEEETTSCEE--EECTTSCSSCSEEECCCTTSCCC
T ss_pred eEEEEeCCCCCccEEEEEec---ccceEEEeeccccccCCCccEEEEEeCCCeEE--EEeCCCCCCcceeccccCCCCCC
Confidence 34555 2222 33332211 11110001112236899999999887665432 23322211 111110001 1
Q ss_pred CCCccc----ccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec---CCCCCccEEEEEeecCcceee
Q 004149 198 WKGQGD----WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP---LNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 198 ~~~~~~----~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp---Dg~~~~~~l~~~~~~~~~~~~ 270 (771)
...... |+++....+++.....|.+||+.+++.... ......+..+.|+| +++. |+..+
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~----l~~~~-------- 231 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNK----LVATS-------- 231 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCE----EEEEE--------
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCE----EEEEC--------
Confidence 111222 556655555666678999999999987666 44455788999999 8886 66654
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-cee-----cCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN-----LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-----lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
....|+++|+ .+++ ... +..+...+....|+|||+.+++....+
T Consensus 232 -------~dg~i~i~d~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 281 (357)
T 3i2n_A 232 -------LEGKFHVFDM-----------------RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA------ 281 (357)
T ss_dssp -------STTEEEEEEE-----------------EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT------
T ss_pred -------CCCeEEEEeC-----------------cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC------
Confidence 2336777776 2222 222 225666788999999999544444332
Q ss_pred ccccccceeeecCCCCCCCCccc---------eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEK---------IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
..|.+||+..+........ .......+.. +...+..++|+|||+.|+++...++...+
T Consensus 282 ----g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 282 ----GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL---------STQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp ----SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC---------CSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred ----CcEEEeecCCCcccccccCCCCccccccccceeecccc---------CCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 3578888776543211100 0001111100 11235578899999988767777777677
Q ss_pred EEE
Q 004149 416 ISV 418 (771)
Q Consensus 416 ~~~ 418 (771)
|.+
T Consensus 349 w~~ 351 (357)
T 3i2n_A 349 LIV 351 (357)
T ss_dssp EEE
T ss_pred EEC
Confidence 644
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-10 Score=124.03 Aligned_cols=267 Identities=9% Similarity=-0.012 Sum_probs=149.5
Q ss_pred cceEEEeCC----CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCc-ccccccC-CCcccceeecCCCCeEEEEec
Q 004149 100 GASAVVPSP----SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQT-VHGSVYA-DGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 100 ~~~~~~~SP----dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....+||| ||++|+...... .++.+++ ..++..+.+..... ..+..|- +.....+.+|||++.+++...
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~---~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWP---PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEES---SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CcceEEeCCCcCCCCCEEEEEEccC---CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 467889999 999986654322 2344444 34444444443110 0000000 112357889999987766432
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|+++|..+++...+..++....+..+.|+|||+
T Consensus 300 -------------------------------------------~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 300 -------------------------------------------ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR 336 (543)
T ss_dssp -------------------------------------------TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred -------------------------------------------CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence 2368999998876532211022333566789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CC--cccccee-ecCCC
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SI--SSAFFPR-FSPDG 328 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~--~~~~~p~-~SpDG 328 (771)
+ ++..+. ....|.++|+ .++++..... .. ....... ++||+
T Consensus 337 ~----l~va~~--------------~~~~v~v~D~-----------------~tg~l~~~i~~g~~ph~g~g~~~~~p~~ 381 (543)
T 1nir_A 337 Y----FMTAAN--------------NSNKVAVIDS-----------------KDRRLSALVDVGKTPHPGRGANFVHPKY 381 (543)
T ss_dssp E----EEEEEG--------------GGTEEEEEET-----------------TTTEEEEEEECSSSBCCTTCEEEEETTT
T ss_pred E----EEEEec--------------CCCeEEEEEC-----------------CCCeEEEeeccCCCCCCCCCcccCCCCC
Confidence 6 655442 2236888998 6665543222 11 1112233 47887
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
..++...... ...|.++|.++.+..... ..++..+.... .....+.++|||+.|+....
T Consensus 382 g~~~~s~~~~---------d~~V~v~d~~~~~~~~~~---~~~v~~l~~~g---------~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 382 GPVWSTSHLG---------DGSISLIGTDPKNHPQYA---WKKVAELQGQG---------GGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp EEEEEEEBSS---------SSEEEEEECCTTTCTTTB---TSEEEEEECSC---------SCCCCEECCTTCCEEEECCT
T ss_pred ccEEEeccCC---------CceEEEEEeCCCCCchhc---CeEEEEEEcCC---------CCceEEEcCCCCCcEEEecC
Confidence 7765444321 245888888773321100 11222222211 12345779999998876542
Q ss_pred eC----CeeEEEEEECCCCcEE--Ee--------cCCCCCceeeEEeecCCEEEEEEe-CCCCCCeEEEEEeccc
Q 004149 409 WG----SSQVIISVNVSSGELL--RI--------TPAESNFSWSLLTLDGDNIIAVSS-SPVDVPQVKYGYFVDK 468 (771)
Q Consensus 409 ~~----~~~~l~~~d~~tg~~~--~l--------~~~~~~~~~~~~s~d~~~l~~~~s-~~~~p~~l~~~~~~~~ 468 (771)
.. ....|..+|+++++.. .| ...........|++||+.++++.- .......|.++|..+.
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 11 1336777898887754 32 122233456789999999998864 3345678888886554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-10 Score=117.93 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=64.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcc--cccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTV--HGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
....++|||||+++++... ....++.++ .+++....+...... .+ .....+.|||||++|++.......
T Consensus 44 ~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~~~~~~~~~ 115 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSVPGEVG-----RSMYSFAISPDGKEVYATVNPTQR 115 (349)
T ss_dssp SSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCSTTEEE-----ECSSCEEECTTSSEEEEEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEccccccccc-----ccccceEECCCCCEEEEEcccccc
Confidence 3568899999998866543 234566666 455544444432210 00 011588999999999887643110
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~ 252 (771)
... .| ......|++||+.+++..... .......+..++|+|||+
T Consensus 116 ~~~-----------------------~~---------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 116 LND-----------------------HY---------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp CSS-----------------------CE---------EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ccc-----------------------cc---------ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 000 00 012368999999886543220 012222466788999997
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-10 Score=122.34 Aligned_cols=256 Identities=11% Similarity=0.064 Sum_probs=150.2
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCC-------cceEEE
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQS-------QLEKEF 139 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~--~~~-------~~~~~~ 139 (771)
..+.+.++++...+.....+ ..+....+.+...+|+| +++.||..+..+ .+.+| ..+ ......
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~--~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg-----~v~vw~~~~~~~~~~~~~~~~~~ 127 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNV--PLVCGHTAPVLDIAWCPHNDNVIASGSEDC-----TVMVWEIPDGGLVLPLREPVITL 127 (402)
T ss_dssp SSCCEEEEETTCCEECCTTC--CCBCCCSSCEEEEEECTTCTTEEEEEETTS-----EEEEEECCTTCCSSCBCSCSEEE
T ss_pred CCCEEEEEECccCCCCCCCC--ceEecCCCCEEEEEeCCCCCCEEEEEeCCC-----eEEEEEccCCCCccccCCceEEe
Confidence 34567777664332111111 11112235688999999 888888765443 44455 222 122222
Q ss_pred e-cCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCc
Q 004149 140 H-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 218 (771)
Q Consensus 140 ~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~ 218 (771)
. .... +..+.|+|||+.+++.+. .+.
T Consensus 128 ~~h~~~----------v~~~~~~p~~~~~l~s~~-------------------------------------------~dg 154 (402)
T 2aq5_A 128 EGHTKR----------VGIVAWHPTAQNVLLSAG-------------------------------------------CDN 154 (402)
T ss_dssp ECCSSC----------EEEEEECSSBTTEEEEEE-------------------------------------------TTS
T ss_pred cCCCCe----------EEEEEECcCCCCEEEEEc-------------------------------------------CCC
Confidence 2 1222 268999999954444322 225
Q ss_pred eEEEEEccCCceeeccC-CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 219 SLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~-~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
.|.+||+.+++...... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~---------------~d~~i~iwd~---------- 205 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL----ICTSC---------------RDKRVRVIEP---------- 205 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC----EEEEE---------------TTSEEEEEET----------
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE----EEEEe---------------cCCcEEEEeC----------
Confidence 79999999887655410 123446789999999998 88776 3347899998
Q ss_pred hhhcCCCCCCcc-eec-CCCCcc-ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 298 ELKESSSEDLPV-VNL-TESISS-AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 298 ~~~~~~~~~~~~-~~l-t~~~~~-~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.+++. ..+ ..+.+. +....|+|||+.|+...... ....|.+||+.+++........
T Consensus 206 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--------~d~~i~iwd~~~~~~~~~~~~~------ 264 (402)
T 2aq5_A 206 -------RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM--------SERQVALWDTKHLEEPLSLQEL------ 264 (402)
T ss_dssp -------TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT--------CCEEEEEEETTBCSSCSEEEEC------
T ss_pred -------CCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC--------CCceEEEEcCccccCCceEEec------
Confidence 44443 333 334333 67899999999777653211 1346899998775531110000
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc--EEEecC--CCCCceeeEEeecCCEEE
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLRITP--AESNFSWSLLTLDGDNII 448 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~--~~~l~~--~~~~~~~~~~s~d~~~l~ 448 (771)
. ....+..++|+||++.|+++...++...+| ++.+++ +..+.. ....+....|++++..++
T Consensus 265 ---~--------~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~--d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 265 ---D--------TSSGVLLPFFDPDTNIVYLCGKGDSSIRYF--EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp ---C--------CCSSCEEEEEETTTTEEEEEETTCSCEEEE--EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred ---c--------CCCceeEEEEcCCCCEEEEEEcCCCeEEEE--EecCCCcceEeecccccCCcccceEEecccccce
Confidence 0 001245678999999887776556666666 445565 554432 223455678888887654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.25 E-value=6.7e-10 Score=117.80 Aligned_cols=252 Identities=11% Similarity=0.074 Sum_probs=143.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCC-CccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
.++||+.|++.. ..+.+.++++..... ....+... ...+...+|+|||+.|+.....+ .-.+|
T Consensus 16 ~s~~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~~~~~dg--~i~vw 79 (372)
T 1k8k_C 16 WNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEH-----NGQVTGVDWAPDSNRIVTCGTDR--NAYVW 79 (372)
T ss_dssp ECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECC-----SSCEEEEEEETTTTEEEEEETTS--CEEEE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEeCCCCcEEeeeeecCC-----CCcccEEEEeCCCCEEEEEcCCC--eEEEE
Confidence 356888887652 235677777643310 11222222 25688899999999998776432 22333
Q ss_pred EEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004149 128 ELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
.+ ..++......... ..+ .+..+.|+|||+.|+..+.+
T Consensus 80 d~-~~~~~~~~~~~~~-~~~------~v~~~~~~~~~~~l~~~~~d---------------------------------- 117 (372)
T 1k8k_C 80 TL-KGRTWKPTLVILR-INR------AARCVRWAPNEKKFAVGSGS---------------------------------- 117 (372)
T ss_dssp EE-ETTEEEEEEECCC-CSS------CEEEEEECTTSSEEEEEETT----------------------------------
T ss_pred EC-CCCeeeeeEEeec-CCC------ceeEEEECCCCCEEEEEeCC----------------------------------
Confidence 33 2333233322211 111 23689999999999886432
Q ss_pred cCcccCCccCceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004149 208 WGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
..|.+||+.+++ ...+. ......+..+.|+||++. |+..+ ....|+
T Consensus 118 ----------~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~---------------~dg~i~ 167 (372)
T 1k8k_C 118 ----------RVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVL----LAAGS---------------CDFKCR 167 (372)
T ss_dssp ----------SSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSE----EEEEE---------------TTSCEE
T ss_pred ----------CEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCE----EEEEc---------------CCCCEE
Confidence 567888888776 23331 233556889999999987 77655 223677
Q ss_pred EEecccccc-hhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 284 AVRVSLYKS-EASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 284 ~~d~~~~~~-~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
++|+..... .......+......+ ....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----------STVCLADADKKMA 236 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----------TEEEEEEGGGTTE
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-----------CEEEEEECCCCce
Confidence 777410000 000000000000122 334455566678899999999988877754 2588999876653
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
..... . ....+..++|+||++.| ++. .++...+|.++.
T Consensus 237 ~~~~~----------~---------~~~~v~~~~~~~~~~~l-~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 237 VATLA----------S---------ETLPLLAVTFITESSLV-AAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEE----------C---------SSCCEEEEEEEETTEEE-EEE-TTSSCEEEEEET
T ss_pred eEEEc----------c---------CCCCeEEEEEecCCCEE-EEE-eCCeEEEEEccC
Confidence 21110 0 00124567899999744 444 566777777664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-08 Score=107.51 Aligned_cols=258 Identities=10% Similarity=0.022 Sum_probs=141.9
Q ss_pred EEEeCCCCCeEEEEecC------CCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 103 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
.+++||||+++++.... +.....+..++ ...+....+.+..... .-....-..+.|||||++|++....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~--~~~g~~p~~~~~spDG~~l~v~n~~-- 145 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--FDVGPYSWMNANTPNNADLLFFQFA-- 145 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc--cccCCCccceEECCCCCEEEEEecC--
Confidence 89999999999665421 11123455555 3344444444320000 0000011478999999998876332
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCC
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~ 254 (771)
....|.++| +++++... ...+. .+.+.|+++.
T Consensus 146 ----------------------------------------~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~~~~~- 178 (373)
T 2mad_H 146 ----------------------------------------AGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHPGAPS- 178 (373)
T ss_pred ----------------------------------------CCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEeCCCc-
Confidence 125799999 98876533 22222 2456777776
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec------CCCCccccceeecCCC
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------TESISSAFFPRFSPDG 328 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l------t~~~~~~~~p~~SpDG 328 (771)
.++..+ ....+..+++ .+...... .........|.+++|+
T Consensus 179 ---~~~~~~--------------~dg~~~~vd~-----------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 179 ---TFYLLC--------------AQGGLAKTDH-----------------AGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ---eEEEEc--------------CCCCEEEEEC-----------------CCcEEEEEeccccccCCcceeecceeEecC
Confidence 554432 1224555553 11111010 1111123457889999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc-CC-CCCcccccCCCCCCccccCCCEEEEE
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-EG-DCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~-~~f~g~~~~~~~~~~~s~dg~~l~~~ 406 (771)
..++|.+.. .+++++|+.++..+.+. . .++.... .. ...| .....+.+++|+++||+.
T Consensus 225 ~~~~~~~~~-----------~~v~vid~~~~~~~v~~-~----~~~~~~~~~~~~~~p----~g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 225 GRIVWPVYS-----------GKILQADISAAGATNKA-P----IDALSGGRKADTWRP----GGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred CEEEEEcCC-----------ceEEEEeccCCcceEee-e----eeecCCcccccceec----CceEeEEECCCCCEEEEE
Confidence 998888743 26999998765432211 0 0000000 00 0011 011235689999999887
Q ss_pred eeeC-------CeeEEEEEECCCCcE-EEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 407 SIWG-------SSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 407 ~~~~-------~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
.... ....|+.||++++++ .+|.... ......+++||+.++++.+... ..|.++|..+.
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~--~~V~ViD~~t~ 351 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAG 351 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCC--CeEEEEECCCC
Confidence 6432 235799999999987 4554333 3456789999996666654222 46888887654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.2e-11 Score=122.35 Aligned_cols=234 Identities=9% Similarity=0.016 Sum_probs=140.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+|||..|+-. ...+.+.+|++... .....+.... ..+...+|+|||++|+..+... .+.+
T Consensus 22 sp~~~~l~s~---------~~dg~v~lWd~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~s~d~-----~i~v 81 (304)
T 2ynn_A 22 HPTEPWVLTT---------LYSGRVELWNYETQ-VEVRSIQVTE-----TPVRAGKFIARKNWIIVGSDDF-----RIRV 81 (304)
T ss_dssp CSSSSEEEEE---------ETTSEEEEEETTTT-EEEEEEECCS-----SCEEEEEEEGGGTEEEEEETTS-----EEEE
T ss_pred CCCCCEEEEE---------cCCCcEEEEECCCC-ceeEEeeccC-----CcEEEEEEeCCCCEEEEECCCC-----EEEE
Confidence 4577666543 23456777776332 1122222221 4577889999999998776544 5666
Q ss_pred ec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC-CCCCCccCCCCCCcccccC
Q 004149 130 WS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK-GGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 206 (771)
|+ .++....+.... + .+.+++|+||++.|+..+.+...+ .|+..... .......+........|.|
T Consensus 82 wd~~~~~~~~~~~~h~---~------~v~~~~~~~~~~~l~sgs~D~~v~--lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHP---D------YIRSIAVHPTKPYVLSGSDDLTVK--LWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EETTTCCEEEEEECCS---S------CEEEEEECSSSSEEEEEETTSCEE--EEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred EECCCCcEEEEEeCCC---C------cEEEEEEcCCCCEEEEECCCCeEE--EEECCCCcchhhhhcccCCcEEEEEECC
Confidence 73 333332222111 1 126899999999999887766543 33321110 1111223334445667777
Q ss_pred Cc-CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec--CCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004149 207 DW-GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 207 d~-g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp--Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
+. ...+++..+..|.+||+..+.............+....|+| |++. |+..+ .+..|.
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----l~s~s---------------~D~~i~ 211 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY----MITAS---------------DDLTIK 211 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE----EEEEE---------------TTSEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE----EEEEc---------------CCCeEE
Confidence 43 34556667889999999766543221022334566778877 5554 55544 334788
Q ss_pred EEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 284 AVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
++|+ .+++ ...+..+...+....|+|+++.|+..+.+. .|.+||+.+++.
T Consensus 212 iWd~-----------------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg-----------~i~iWd~~~~~~ 262 (304)
T 2ynn_A 212 IWDY-----------------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-----------TLKIWNSSTYKV 262 (304)
T ss_dssp EEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-----------CEEEEETTTCCE
T ss_pred EEeC-----------------CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC-----------eEEEEECCCCce
Confidence 8898 4444 455666777788999999999888777653 488999887654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-10 Score=121.75 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=109.8
Q ss_pred CceEEEEEcc--CCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 217 QPSLFVININ--SGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 217 ~~~l~v~d~~--~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
...|.+||+. +++.... ........+..++|+|||+. |++.+ ....|+.+++
T Consensus 124 dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~~~---------------~~g~v~~~~~------ 178 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT----VIIAD---------------KFGDVYSIDI------ 178 (450)
T ss_dssp GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET------
T ss_pred CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE----EEEEe---------------CCCcEEEEec------
Confidence 3678999988 6655444 11123346778999999997 77665 2347899997
Q ss_pred hhhhhhhcCCCCCCcce-----ecCCCCccccceeecCC---CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC-
Q 004149 294 ASELELKESSSEDLPVV-----NLTESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS- 364 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~-----~lt~~~~~~~~p~~SpD---G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~- 364 (771)
.++... .+..+...+....|||| |+.|+..+.+ ..|++||+.++.....
T Consensus 179 -----------~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 179 -----------NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----------EHIKISHYPQCFIVDKW 236 (450)
T ss_dssp -----------TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----------SCEEEEEESCTTCEEEE
T ss_pred -----------CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----------CcEEEEECCCCceeeee
Confidence 333322 44455667889999999 8888777654 3588999877654211
Q ss_pred ccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-------------
Q 004149 365 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA------------- 431 (771)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~------------- 431 (771)
..+ +...+..++|+ ||+.|+ +...++ .|..+|+.+++.......
T Consensus 237 ~~~-------------------h~~~v~~~~~s-d~~~l~-s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (450)
T 2vdu_B 237 LFG-------------------HKHFVSSICCG-KDYLLL-SAGGDD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHL 293 (450)
T ss_dssp CCC-------------------CSSCEEEEEEC-STTEEE-EEESSS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSB
T ss_pred ecC-------------------CCCceEEEEEC-CCCEEE-EEeCCC--eEEEEECCCCcEeeeecchhhhhhhhhhccc
Confidence 000 01124567899 998665 444444 455668888875443321
Q ss_pred -------------CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 432 -------------ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 432 -------------~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
...+....++++++.|++.... -..|++.++
T Consensus 294 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---d~~i~iw~~ 337 (450)
T 2vdu_B 294 APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA---TKCIIILEM 337 (450)
T ss_dssp C----------CBCCCEEEEEECSSSSEEEEEETT---CSEEEEEEE
T ss_pred ccccccccccccceEEEEEEEEeCCCCEEEEEECC---CCeEEEEEe
Confidence 1123445777888877766632 245666666
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-10 Score=124.44 Aligned_cols=256 Identities=11% Similarity=0.008 Sum_probs=153.5
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++|||||++|+.....+ .+.+|+. +...+... .+ .......|+|||++|+..+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~-----~v~i~d~~~~~~~~~~~----~~------~~~~~~~~~~~~~~l~~~~~------ 117 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG-----HDFLFNTIIRDGSKMLK----RA------DYTAVDTAKLQMRRFILGTT------ 117 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT-----EEEEEECCSEETTTTSC----SC------CEEEEEEECSSSCEEEEEET------
T ss_pred ccceeeeecCCeEEEEEcCC-----cEEEEEecccceeeEEe----cC------CceEEEEEecCCCEEEEEEC------
Confidence 34579999999998876543 4445522 11111111 11 11235579999999988643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...|.+||+.+++..... ......+..++|+|||+. |
T Consensus 118 --------------------------------------dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l 154 (420)
T 3vl1_A 118 --------------------------------------EGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEA----L 154 (420)
T ss_dssp --------------------------------------TSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSE----E
T ss_pred --------------------------------------CCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCE----E
Confidence 257899999988877662 244557889999999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..+ .+..|.++|+. .+.....+..+...+....|+|||+.|+..+.+.
T Consensus 155 ~s~s---------------~d~~i~iwd~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 203 (420)
T 3vl1_A 155 ISSS---------------QDMQLKIWSVK----------------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG 203 (420)
T ss_dssp EEEE---------------TTSEEEEEETT----------------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred EEEe---------------CCCeEEEEeCC----------------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 7665 33478889982 2334566666777899999999999998777553
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccc----eeeEEecccccCCC-CCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEK----IVDVIPVVQCAEGD-CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~-~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
.|.+||+.+++....... ...+..+...+... .........+..++|+|||+.|+ +...++.
T Consensus 204 -----------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~- 270 (420)
T 3vl1_A 204 -----------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI-AGHVSGV- 270 (420)
T ss_dssp -----------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE-EEETTSC-
T ss_pred -----------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE-EEcCCCe-
Confidence 488889877654221110 00000000000000 00001123456789999998664 4444555
Q ss_pred EEEEEECCCCcEEEec-CC-CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 414 VIISVNVSSGELLRIT-PA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~-~~-~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|..+|+.+++..... .. ...+....|+++++.++++.+.. ..|.+.++.++
T Consensus 271 -i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~ 323 (420)
T 3vl1_A 271 -ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN---GMLAQWDLRSP 323 (420)
T ss_dssp -EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT---SEEEEEETTCT
T ss_pred -EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC---CeEEEEEcCCC
Confidence 445577777644333 22 23456678899988444444322 45777776543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-10 Score=117.39 Aligned_cols=249 Identities=8% Similarity=0.057 Sum_probs=143.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||+.||+....+ .+.+| ..++...+..+.. ..+ .+.++.|+|||+.|+..+.
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~-h~~------~v~~~~~~~~~~~l~~~~~---- 72 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELKE-HNG------QVTGVDWAPDSNRIVTCGT---- 72 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEEC-CSS------CEEEEEEETTTTEEEEEET----
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----EEEEEeCCCCcEEeeeeecC-CCC------cccEEEEeCCCCEEEEEcC----
Confidence 4578899999999998764432 34444 3333112222211 111 2268999999999988643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~ 255 (771)
...|.+||+.+++..... .......+..+.|+|||+.
T Consensus 73 ----------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 110 (372)
T 1k8k_C 73 ----------------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK-- 110 (372)
T ss_dssp ----------------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE--
T ss_pred ----------------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE--
Confidence 257899999888743321 1334456889999999987
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceec-CCCCccccceeecCCCCE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNL-TESISSAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~l-t~~~~~~~~p~~SpDG~~ 330 (771)
|+..+ .+..|.++|+ ..+. ...+ ..+...+....|+|||+.
T Consensus 111 --l~~~~---------------~d~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 111 --FAVGS---------------GSRVISICYF-----------------EQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp --EEEEE---------------TTSSEEEEEE-----------------ETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred --EEEEe---------------CCCEEEEEEe-----------------cCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 77665 2235666665 2232 2233 334567889999999998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccc--------eeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK--------IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
|+..+.+. .|.+||+........... .......+. + ....+..++|+||++.
T Consensus 157 l~~~~~dg-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~v~~~~~~~~~~~ 216 (372)
T 1k8k_C 157 LAAGSCDF-----------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------S-SCGWVHGVCFSANGSR 216 (372)
T ss_dssp EEEEETTS-----------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------C-CSSCEEEEEECSSSSE
T ss_pred EEEEcCCC-----------CEEEEEcccccccccccccccccccchhhheEecC--------C-CCCeEEEEEECCCCCE
Confidence 88776543 478888653221100000 000111010 0 1113457789999986
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 403 MLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
|+ +...++. |..+|+.+++... +......+....|+++++.++. . .+ ..+.+.++..
T Consensus 217 l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~--~d--~~i~i~~~~~ 274 (372)
T 1k8k_C 217 VA-WVSHDST--VCLADADKKMAVATLASETLPLLAVTFITESSLVAA-G--HD--CFPVLFTYDS 274 (372)
T ss_dssp EE-EEETTTE--EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE-E--TT--SSCEEEEEET
T ss_pred EE-EEeCCCE--EEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE-E--eC--CeEEEEEccC
Confidence 65 4444554 5555776776544 4333335566788988875443 3 22 2345555544
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-10 Score=117.92 Aligned_cols=276 Identities=11% Similarity=0.027 Sum_probs=156.9
Q ss_pred ccceEEEe-----CC-CCCeEEEEecCCCCCCeEEEEecCCc---c-eEEEecCCcccccccCCCcccceeecCCCCeEE
Q 004149 99 TGASAVVP-----SP-SGSKLLVVRNPENESPIQFELWSQSQ---L-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIA 168 (771)
Q Consensus 99 ~~~~~~~~-----SP-dG~~la~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la 168 (771)
..+...+| +| ||+.||..+..+ .-.+|.+..... . .....+. +..+ .+..++|+||++.|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~--~v~iWd~~~~~~~~~~~~~~~~l~-~h~~------~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDK--TVMIWKLYEEEQNGYFGIPHKALT-GHNH------FVSDLALSQENCFAI 92 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTS--CEEEEEECSSCCSSBSEEEEEEEC-CCSS------CEEEEEECSSTTEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCC--EEEEEECCcCCcccccccccchhc-cCCC------ceEEEEECCCCCEEE
Confidence 34677778 77 999888765543 333333331111 1 1111111 1111 236899999999998
Q ss_pred EEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC-CCCCCccceEEE
Q 004149 169 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVW 247 (771)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~-~~~~~~~~~~~w 247 (771)
..+.+...+ .|+............+........|+++....+++.....|.+||+.+.....+.. ......+..+.|
T Consensus 93 s~s~D~~v~--lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 93 SSSWDKTLR--LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEETTSEEE--EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred EEcCCCcEE--EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence 877665433 34432222222223344445567789987667777778999999998655444410 123345778899
Q ss_pred ecCCCCC------ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccc
Q 004149 248 APLNEGL------HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFF 321 (771)
Q Consensus 248 spDg~~~------~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~ 321 (771)
+|+++.. .++|+..+ .+..|.++|. .......+..+...+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~---------------~d~~i~iwd~-----------------~~~~~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVG---------------WDGRLKVWNT-----------------NFQIRYTFKAHESNVNH 218 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEE---------------TTSEEEEEET-----------------TTEEEEEEECCSSCEEE
T ss_pred ccccccccccCCCCCEEEEEc---------------CCCEEEEEcC-----------------CCceeEEEcCccccceE
Confidence 9998420 00144333 2346777775 44444455566677889
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004149 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~ 401 (771)
.+|||||++|+..+.+. .|.+||+............ ...+..++|+||++
T Consensus 219 ~~~s~~g~~l~sgs~dg-----------~v~iwd~~~~~~~~~~~~~-------------------~~~v~~v~~sp~~~ 268 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDK-----------KLLIWDILNLTYPQREFDA-------------------GSTINQIAFNPKLQ 268 (343)
T ss_dssp EEECTTSSEEEEEETTC-----------EEEEEESSCCSSCSEEEEC-------------------SSCEEEEEECSSSC
T ss_pred EEECCCCCEEEEEcCCC-----------eEEEEECCCCcccceeecC-------------------CCcEEEEEECCCCC
Confidence 99999999998777553 5888888433221100000 01245678999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcEE---EecC-----------CCCCceeeEEeecCCEEEEEE
Q 004149 402 TMLLSSIWGSSQVIISVNVSSGELL---RITP-----------AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~tg~~~---~l~~-----------~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.|. .+ .++...|| ++.+++.. .+.. ....+....|+|+|+.|+...
T Consensus 269 ~la-~~-~d~~v~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 269 WVA-VG-TDQGVKIF--NLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp EEE-EE-ESSCEEEE--ESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred EEE-EE-CCCCEEEE--EeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 553 33 34444454 66555432 2221 112234567888988776554
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-10 Score=129.67 Aligned_cols=279 Identities=12% Similarity=0.102 Sum_probs=156.9
Q ss_pred cccceeEEEEEEeecCCCCc----cceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEe
Q 004149 67 ANKRKKFMLSTVISKENENS----VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFH 140 (771)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~----~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~ 140 (771)
+....+.+.+|++....... ..++. ....+...+|||||+.|+..+..+ .+.+|+ .+...+.+.
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~s~~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~~ 469 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTG-----HSHFVEDVVLSSDGQFALSGSWDG-----ELRLWDLAAGVSTRRFV 469 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceecC-----CCCcEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCcceeEEe
Confidence 33445677777775443211 12222 225688899999999998776544 566773 333222222
Q ss_pred c-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC---CCCCccCCCCCCcccccCCcC--cccCC
Q 004149 141 V-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG---GSSDKDCNSWKGQGDWEEDWG--ETYAG 214 (771)
Q Consensus 141 ~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~g--~~~~~ 214 (771)
. ... +.+++|||||+.|+..+.+...+ .|+...... ......+..+.....|+++.. ..+++
T Consensus 470 ~h~~~----------v~~~~~s~~~~~l~s~s~D~~i~--iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 470 GHTKD----------VLSVAFSLDNRQIVSASRDRTIK--LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp CCSSC----------EEEEEECTTSSCEEEEETTSCEE--EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred CCCCC----------EEEEEEeCCCCEEEEEeCCCEEE--EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 1 222 26899999999999888766543 333211000 011112333444556777642 24556
Q ss_pred ccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 215 KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 215 ~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
..+..|.+||+.+++..... ......+..++|||||+. |+..+ .+..|.++|+
T Consensus 538 s~d~~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~----l~sg~---------------~Dg~i~iwd~------- 590 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSL----CASGG---------------KDGVVLLWDL------- 590 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSBCEEEET-------
T ss_pred eCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCE----EEEEe---------------CCCeEEEEEC-------
Confidence 66789999999988765541 334556889999999997 77655 3347888887
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc-eeeEEe
Q 004149 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK-IVDVIP 373 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~ 373 (771)
.+++..........+....|||||..|+.... ..|.+||+.++........ ......
T Consensus 591 ----------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------~~i~iwd~~~~~~~~~~~~~~~~~~~ 648 (694)
T 3dm0_A 591 ----------AEGKKLYSLEANSVIHALCFSPNRYWLCAATE------------HGIKIWDLESKSIVEDLKVDLKAEAE 648 (694)
T ss_dssp ----------TTTEEEECCBCSSCEEEEEECSSSSEEEEEET------------TEEEEEETTTTEEEEEECCCCC----
T ss_pred ----------CCCceEEEecCCCcEEEEEEcCCCcEEEEEcC------------CCEEEEECCCCCChhhhccccccccc
Confidence 55544333334455788999999987765432 2388999887653211000 000000
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
............ .......++|||||+.| ++.+.++...||.+
T Consensus 649 ~~~~~~~~~~~~-~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 649 KADNSGPAATKR-KVIYCTSLNWSADGSTL-FSGYTDGVIRVWGI 691 (694)
T ss_dssp -------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC
T ss_pred cccccccccCCc-eeEEeeeEEEcCCCCEE-EEEcCCCeEEEEec
Confidence 000000000000 00012356899999966 56666777777754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.9e-11 Score=125.51 Aligned_cols=210 Identities=13% Similarity=0.088 Sum_probs=114.8
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCC-CCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++||+.|+... ..+.+.+|++.... .....+. .....+...+|||||++|+..+..+ .+.
T Consensus 20 s~~g~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~ 80 (377)
T 3dwl_C 20 NSQRTEFVTTT---------ATNQVELYEQDGNGWKHARTFS-----DHDKIVTCVDWAPKSNRIVTCSQDR-----NAY 80 (377)
T ss_dssp CSSSSEEECCC---------SSSCBCEEEEETTEEEECCCBC-----CCSSCEEEEEECTTTCCEEEEETTS-----SEE
T ss_pred CCCCCEEEEec---------CCCEEEEEEccCCceEEEEEEe-----cCCceEEEEEEeCCCCEEEEEeCCC-----eEE
Confidence 56888776542 23455666664321 1112222 2235688999999999998876543 344
Q ss_pred Eec--CCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 129 LWS--QSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 129 ~~~--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
+|+ .+. ........ ...+ .+.++.|+|||+.|+..+.+
T Consensus 81 vwd~~~~~~~~~~~~~~-~~~~------~v~~~~~~~~~~~l~~~~~d-------------------------------- 121 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLL-RLNR------AATFVRWSPNEDKFAVGSGA-------------------------------- 121 (377)
T ss_dssp EC------CCCCEEECC-CCSS------CEEEEECCTTSSCCEEEESS--------------------------------
T ss_pred EEEcCCCCceeeeeEec-ccCC------ceEEEEECCCCCEEEEEecC--------------------------------
Confidence 552 222 11222221 1111 23689999999999886543
Q ss_pred CCcCcccCCccCceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 206 EDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
..|.+||+.+++ ...+. .+....+..++|+|||+. |+..+ .+..
T Consensus 122 ------------~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l~~~~---------------~d~~ 169 (377)
T 3dwl_C 122 ------------RVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNVL----LAAGC---------------ADRK 169 (377)
T ss_dssp ------------SCEEECCC-----CCCCEEEC-SSCCSCEEEEEECTTSSE----EEEEE---------------SSSC
T ss_pred ------------CeEEEEEECCcccceeeeEee-cccCCCeEEEEEcCCCCE----EEEEe---------------CCCE
Confidence 468888888776 44552 124567889999999987 77765 2235
Q ss_pred eEEEecccccc-hhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 282 LYAVRVSLYKS-EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 282 l~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|.++|+..... .......+......++ ...+ .+...+....|||||+.|+..+.+. .|.+||+.++
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-----------~i~iwd~~~~ 237 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-----------SVTIAYPSAP 237 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-----------EEC-CEECST
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-----------cEEEEECCCC
Confidence 66666510000 0000000000000122 2223 5556688999999999998877653 4888888876
Q ss_pred CC
Q 004149 360 GN 361 (771)
Q Consensus 360 ~~ 361 (771)
+.
T Consensus 238 ~~ 239 (377)
T 3dwl_C 238 EQ 239 (377)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-09 Score=114.62 Aligned_cols=244 Identities=12% Similarity=0.105 Sum_probs=146.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~ 176 (771)
..+...+|||||++||.....+ .-.+|.+. .+....+..+. ...+. +.++.|+|+ ++.|+..+.+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg--~i~iw~~~-~~~~~~~~~~~-~h~~~------v~~~~~~~~~~~~~l~s~~~d--- 78 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDK--TIKIFEVE-GETHKLIDTLT-GHEGP------VWRVDWAHPKFGTILASCSYD--- 78 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTS--CEEEEEEE-TTEEEEEEEEC-CCSSC------EEEEEECCGGGCSEEEEEETT---
T ss_pred ccEEEEEEcCCCCEEEEEECCC--cEEEEecC-CCcceeeeEec-CCCCc------EEEEEeCCCCCCCEEEEeccC---
Confidence 4588899999999998775432 22333332 12222222221 11112 268999988 8888776432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCCccceEEEecC--C
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL--N 251 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspD--g 251 (771)
..|.+||+.+++. ..+ ......+..+.|+|+ +
T Consensus 79 -----------------------------------------g~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 79 -----------------------------------------GKVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp -----------------------------------------SCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGC
T ss_pred -----------------------------------------CEEEEEEcCCCceeEeeee--cCCCcceEEEEeCCCCCC
Confidence 5789999998863 333 334557889999999 7
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecC--
Q 004149 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSP-- 326 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~Sp-- 326 (771)
+. |+..+ ....|.++|+ ..+ ....+..+...+..+.|+|
T Consensus 116 ~~----l~~~~---------------~d~~i~v~d~-----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 116 PL----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp SE----EEEEE---------------TTSEEEEEEC-----------------CTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred CE----EEEec---------------CCCcEEEEec-----------------CCCCceeeEEecCCCCceEEEEEcCcc
Confidence 76 66655 3347888887 333 2334455666788999999
Q ss_pred -----------CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004149 327 -----------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 327 -----------DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
||+.|+..+.+. .|++||+.++.... .....+.. +...+..++
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~------~~~~~~~~---------h~~~v~~~~ 213 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLEG---------HSDWVRDVA 213 (379)
T ss_dssp ----------CTTCEEEEEETTS-----------CEEEEEEETTTTEE------EEEEEECC---------CSSCEEEEE
T ss_pred ccccccccCCCCCCEEEEEeCCC-----------eEEEEEecCCCcce------eeEEEEec---------ccCcEeEEE
Confidence 799888777653 48888887654311 01111100 111345778
Q ss_pred cccCC--CEEEEEeeeCCeeEEEEEECCCCc---EEEecC---CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 396 WLSDG--CTMLLSSIWGSSQVIISVNVSSGE---LLRITP---AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 396 ~s~dg--~~l~~~~~~~~~~~l~~~d~~tg~---~~~l~~---~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
|+||+ ..++++...++...+|.+ .+++ ...+.. ....+....|+++++.|+....+ ..+++.++.
T Consensus 214 ~sp~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iw~~~ 286 (379)
T 3jrp_A 214 WSPTVLLRSYLASVSQDRTCIIWTQ--DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD----NKVTLWKEN 286 (379)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEE--SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS----SSEEEEEEE
T ss_pred ECCCCCCCCeEEEEeCCCEEEEEeC--CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC----CcEEEEeCC
Confidence 99993 345566666777667654 4442 233322 22345556899999977766542 235555544
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=122.72 Aligned_cols=292 Identities=11% Similarity=0.015 Sum_probs=159.0
Q ss_pred ccceeEEEEEEeecCCC-----CccceeecCCccccccceEEEeCCC----C---CeEEEEecCCCCCCeEEEEecCCcc
Q 004149 68 NKRKKFMLSTVISKENE-----NSVTFQWAPFPVEMTGASAVVPSPS----G---SKLLVVRNPENESPIQFELWSQSQL 135 (771)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-----~~~~lt~~~~~~~~~~~~~~~~SPd----G---~~la~~~~~~~~~~~~~~~~~~~~~ 135 (771)
....+.+.+|++..... ....+.. ....+...+|+|+ | +.|+..... +.-.+|.+..+...
T Consensus 32 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d--g~i~iw~~~~~~~~ 104 (397)
T 1sq9_A 32 CSGDGYLKVWDNKLLDNENPKDKSYSHFV-----HKSGLHHVDVLQAIERDAFELCLVATTSFS--GDLLFYRITREDET 104 (397)
T ss_dssp EETTSEEEEEESBCCTTCCGGGGEEEEEC-----CTTCEEEEEEEEEEETTTEEEEEEEEEETT--SCEEEEEEEECTTT
T ss_pred EcCCCEEEEEECCCcccccCCCcceEEec-----CCCcEEEEEEecccccCCccccEEEEEcCC--CCEEEEEccCCccc
Confidence 33456778877754431 1122221 2245788999999 9 888876553 33334444332221
Q ss_pred ----eEEEecCCcccccccCCCcccceeec----CCCCe-EEEEecCCCCCCCCccCCC------CCCCC-----CC---
Q 004149 136 ----EKEFHVPQTVHGSVYADGWFEGISWN----SDETL-IAYVAEEPSPSKPTFSLGS------TKGGS-----SD--- 192 (771)
Q Consensus 136 ----~~~~~~~~~~~g~~~~~~~~~~~~wS----pDg~~-la~~~~~~~~~~~~~~~~~------~~~~~-----~~--- 192 (771)
.+....... + ..++.+.++.|+ |||+. |+..+.+.... .|+... ..... ..
T Consensus 105 ~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 105 KKVIFEKLDLLDS-D---MKKHSFWALKWGASNDRLLSHRLVATDVKGTTY--IWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp CCEEEEEECCSCT-T---GGGSCEEEEEEECCC----CEEEEEEETTSCEE--EEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ccccceeeccccc-c---cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEE--EEeCCccccccccceeeccCcceeeee
Confidence 222221100 0 001123789999 99999 87776654322 233221 11111 11
Q ss_pred ----ccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC---C---CCccceEEEecCCCCCccEEEEEe
Q 004149 193 ----KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---K---SLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 193 ----~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~---~---~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
..+........|.++. ..+++.....|.+||+.+++..... .. . ...+..+.|+|||+. |+..+
T Consensus 179 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~h~~~~~~i~~i~~~~~~~~----l~~~~ 252 (397)
T 1sq9_A 179 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF-ESQHSMINNSNSIRSVKFSPQGSL----LAIAH 252 (397)
T ss_dssp ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE-ECCC---CCCCCEEEEEECSSTTE----EEEEE
T ss_pred eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE-eccccccccCCccceEEECCCCCE----EEEEe
Confidence 1234445567788886 6667777889999999988765541 11 2 557889999999997 77655
Q ss_pred ecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCC-------------CCccccceeecCCC
Q 004149 263 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE-------------SISSAFFPRFSPDG 328 (771)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~-------------~~~~~~~p~~SpDG 328 (771)
... ....|.++|+ .+++ ...+.. +...+....|+|||
T Consensus 253 ~d~------------~~g~i~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 253 DSN------------SFGCITLYET-----------------EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp EET------------TEEEEEEEET-----------------TTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred cCC------------CCceEEEEEC-----------------CCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 210 0136888887 4443 344444 55678899999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce-eeEEec-ccccCCCC-CcccccCCCCCCccccCCC----
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI-VDVIPV-VQCAEGDC-FPGLYSSSILSNPWLSDGC---- 401 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-f~g~~~~~~~~~~~s~dg~---- 401 (771)
+.|+..+.+ ..|.+||+.+++........ ... .. ........ ...++...+..++|+|||+
T Consensus 304 ~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 304 ETLCSAGWD-----------GKLRFWDVKTKERITTLNMHCDDI-EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp SEEEEEETT-----------SEEEEEETTTTEEEEEEECCGGGC-SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred CEEEEEeCC-----------CeEEEEEcCCCceeEEEecccCcc-cchhhhhccccccccccCCceeEEEeccccccccc
Confidence 998877654 35889998776532111000 000 00 00000000 0000123456789999984
Q ss_pred -----EEEEEeeeCCeeEEEEEE
Q 004149 402 -----TMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 402 -----~l~~~~~~~~~~~l~~~d 419 (771)
.++++...++...+|.++
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccceEEEecCCCcEEEEEcC
Confidence 356677777777777554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.7e-09 Score=108.55 Aligned_cols=164 Identities=9% Similarity=-0.007 Sum_probs=107.5
Q ss_pred ccceeecC--CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee
Q 004149 155 FEGISWNS--DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA 232 (771)
Q Consensus 155 ~~~~~wSp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~ 232 (771)
+..++|+| +|+.|+..+.+ ..|.+||+.+++...
T Consensus 128 v~~~~~~~~~~~~~l~s~s~d--------------------------------------------g~i~~wd~~~~~~~~ 163 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNR--------------------------------------------GTIGFQSYEDDSQYI 163 (343)
T ss_dssp EEEEECCC---CCEEEEEETT--------------------------------------------CCEEEEESSSSCEEE
T ss_pred EEEEEcCCCCCCCEEEEEeCC--------------------------------------------CcEEEEECCCCcEEE
Confidence 36899999 99988876432 578999999988765
Q ss_pred ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--e
Q 004149 233 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--V 310 (771)
Q Consensus 233 l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~ 310 (771)
+........+..++|+|||+. |+..+ .+..|.++|+ .+++. .
T Consensus 164 ~~~~~~~~~i~~~~~~pdg~~----lasg~---------------~dg~i~iwd~-----------------~~~~~~~~ 207 (343)
T 3lrv_A 164 VHSAKSDVEYSSGVLHKDSLL----LALYS---------------PDGILDVYNL-----------------SSPDQASS 207 (343)
T ss_dssp EECCCSSCCCCEEEECTTSCE----EEEEC---------------TTSCEEEEES-----------------SCTTSCCE
T ss_pred EEecCCCCceEEEEECCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCCCCcc
Confidence 521223335788999999986 66544 3347888898 55543 3
Q ss_pred ecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC
Q 004149 311 NLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 311 ~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
.+.. +...+....|||||+.|+..+.+ .|.+||+.+++......... ...+
T Consensus 208 ~~~~~h~~~v~~l~fs~~g~~l~s~~~~------------~v~iwd~~~~~~~~~~~~~~----------~~~~------ 259 (343)
T 3lrv_A 208 RFPVDEEAKIKEVKFADNGYWMVVECDQ------------TVVCFDLRKDVGTLAYPTYT----------IPEF------ 259 (343)
T ss_dssp ECCCCTTSCEEEEEECTTSSEEEEEESS------------BEEEEETTSSTTCBSSCCCB----------C---------
T ss_pred EEeccCCCCEEEEEEeCCCCEEEEEeCC------------eEEEEEcCCCCcceeecccc----------cccc------
Confidence 5655 56779999999999998877722 48999998765422111100 0000
Q ss_pred CCC--CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 390 SIL--SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 390 ~~~--~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
... .++|+|+|+.|+..+..++...+|.++.......
T Consensus 260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp --CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 112 3789999997765444367778887765444333
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=111.74 Aligned_cols=234 Identities=12% Similarity=0.171 Sum_probs=138.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-C-C--cceEEEecCCcccccccCCCcccceeecCC--CCeEEEEec
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-Q-S--QLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~ 172 (771)
..+...+|||||++||..+..+ ...+|+ . + +....+. +..+. +.+++|+|+ |+.|+..+.
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~---gH~~~------V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDK-----TIKIFEVEGETHKLIDTLT---GHEGP------VWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEEBCSSCBCCCEEEC---CCSSC------EEEEEECCGGGCSEEEEEET
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEc---cccCC------eEEEEecCCCcCCEEEEEcC
Confidence 4578899999999998776543 344552 1 1 2222222 11112 268999874 888877643
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecC-
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPL- 250 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspD- 250 (771)
+ ..|.+||+.+++...+. -......+..++|+|+
T Consensus 76 D--------------------------------------------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 76 D--------------------------------------------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 111 (297)
T ss_dssp T--------------------------------------------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG
T ss_pred C--------------------------------------------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC
Confidence 3 57899999887532221 0233456889999998
Q ss_pred -CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecC
Q 004149 251 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSP 326 (771)
Q Consensus 251 -g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~Sp 326 (771)
|+. |+..+ .+..|.++|+ ..+ ....+..+...+.+..|+|
T Consensus 112 ~g~~----l~s~s---------------~d~~v~~wd~-----------------~~~~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 112 YGPM----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp GCSE----EEEEE---------------TTSEEEEEEB-----------------CSSSCBCCEEEECCSSCEEEEEECC
T ss_pred CCcE----EEEEE---------------CCCcEEEEEe-----------------cCCCceeeeeeecccCccceEeecC
Confidence 665 66554 2336777887 322 1234445566788899999
Q ss_pred C-------------CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 327 D-------------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 327 D-------------G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
+ ++.|+..+.+. .|.+||+.++.... .....+. + +...+..
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~-----------~v~lwd~~~~~~~~------~~~~~l~--------~-H~~~V~~ 209 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLE--------G-HSDWVRD 209 (297)
T ss_dssp CC------------CCEEEEEETTS-----------CEEEEEEETTTTEE------EEEEEEC--------C-CSSCEEE
T ss_pred CcccccccCCCCCCcceEEEEcCCC-----------cEEEEEEcCCCceE------EEEEEec--------C-CCCceEE
Confidence 7 46676666543 47788876644210 0000010 0 1113457
Q ss_pred CccccCC--CEEEEEeeeCCeeEEEEEECCCCcE-EEec---CCCCCceeeEEeecCCEEEEEEe
Q 004149 394 NPWLSDG--CTMLLSSIWGSSQVIISVNVSSGEL-LRIT---PAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 394 ~~~s~dg--~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~---~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
++|+|++ ..++++.+.++...||.++...+.. ..+. .....+....|+++++.|+....
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 8899996 4566777788888888665432222 2222 11223455688999987765554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.20 E-value=8.8e-09 Score=108.65 Aligned_cols=290 Identities=11% Similarity=0.023 Sum_probs=155.4
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCC----CCeEEEEecCCCCCCeE
Q 004149 51 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS----GSKLLVVRNPENESPIQ 126 (771)
Q Consensus 51 ~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPd----G~~la~~~~~~~~~~~~ 126 (771)
+|+....++.... ..+.+|++.... ....+.....+.....+...+|||+ |+.|+.....+ .
T Consensus 31 ~~~~~~~~~~~~~--------~~v~vw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~ 96 (366)
T 3k26_A 31 KEGDPLVFATVGS--------NRVTLYECHSQG-EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG-----I 96 (366)
T ss_dssp CTTSCEEEEEEET--------TEEEEEEECGGG-CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC-----E
T ss_pred CCCCceEEEECCC--------CEEEEEEcCCCc-EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC-----E
Confidence 3466555554432 256666664332 2222221111112245788999999 66777665443 5
Q ss_pred EEEec--CCcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004149 127 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
+.+|+ .++....+.... + .+..+.|+| |++.|+..+.
T Consensus 97 i~v~d~~~~~~~~~~~~~~---~------~i~~~~~~~~~~~~l~s~~~------------------------------- 136 (366)
T 3k26_A 97 IRIINPITMQCIKHYVGHG---N------AINELKFHPRDPNLLLSVSK------------------------------- 136 (366)
T ss_dssp EEEECTTTCCEEEEEESCC---S------CEEEEEECSSCTTEEEEEET-------------------------------
T ss_pred EEEEEchhceEeeeecCCC---C------cEEEEEECCCCCCEEEEEeC-------------------------------
Confidence 66663 334333333111 1 226899999 8888877643
Q ss_pred ccCCcCcccCCccCceEEEEEccCCceeeccC--CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 204 WEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~--~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
...|.+||+.+++...... ......+..+.|+|||+. |+..+ .+..
T Consensus 137 -------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~---------------~dg~ 184 (366)
T 3k26_A 137 -------------DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK----IMSCG---------------MDHS 184 (366)
T ss_dssp -------------TSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE----EEEEE---------------TTSC
T ss_pred -------------CCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE----EEEec---------------CCCC
Confidence 2579999999887655510 134457889999999997 77665 2336
Q ss_pred eEEEecccccchhhhhhhhcC-CCCC------------CcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc
Q 004149 282 LYAVRVSLYKSEASELELKES-SSED------------LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~-~~~~------------~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
|.++|+...... ..+..... .... .....+..+...+....|+ |+.|+..+.+
T Consensus 185 i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d----------- 250 (366)
T 3k26_A 185 LKLWRINSKRMM-NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE----------- 250 (366)
T ss_dssp EEEEESCSHHHH-HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS-----------
T ss_pred EEEEECCCCccc-cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC-----------
Confidence 888887321100 00000000 0000 0011111245567788888 6777666544
Q ss_pred ccceeeecCCCCCCC--Ccccee--eEEecccccCCCCCcccccCCCCCCccccC--CCEEEEEeeeCCeeEEEEEECCC
Q 004149 349 DSLHRIDWPTNGNFS--SLEKIV--DVIPVVQCAEGDCFPGLYSSSILSNPWLSD--GCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~--~~~~~~--~~~~~~~~~~~~~f~g~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~l~~~d~~t 422 (771)
..|.+||+.++.... +..... ........ +...+..++|+|| ++.|+ +...++...+ +|+.+
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~~~l~-~~~~dg~i~v--wd~~~ 318 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---------SQCDIWYMRFSMDFWQKMLA-LGNQVGKLYV--WDLEV 318 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---------SSCCSSCCCCEECTTSSEEE-EECTTSCEEE--EECCS
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccc---------cCCcEEEEEEcCCCCCcEEE-EEecCCcEEE--EECCC
Confidence 358888887654311 100000 01111110 1123567889999 88554 4444555444 56666
Q ss_pred Cc-----EEEecCC--CCCceeeEEeecCCEEEEEEe
Q 004149 423 GE-----LLRITPA--ESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 423 g~-----~~~l~~~--~~~~~~~~~s~d~~~l~~~~s 452 (771)
++ ...+... ...+....|+++++.|+....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence 64 2244433 345566788999988776553
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-09 Score=121.50 Aligned_cols=277 Identities=12% Similarity=0.122 Sum_probs=161.4
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCC---CCccceeecCCcccccc-ceEEEeCC--CCCeEEEEecCCCCC
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN---ENSVTFQWAPFPVEMTG-ASAVVPSP--SGSKLLVVRNPENES 123 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lt~~~~~~~~~~-~~~~~~SP--dG~~la~~~~~~~~~ 123 (771)
+|||+.|++..+ ..+.++++.... .....+... ... +...+||| ||++||.....+
T Consensus 27 spdg~~l~~~~~----------~~v~v~~~~~~~~~~~~~~~~~~h-----~~~~v~~~~~sp~~~~~~l~s~~~dg--- 88 (615)
T 1pgu_A 27 DPTTNAIAYPCG----------KSAFVRCLDDGDSKVPPVVQFTGH-----GSSVVTTVKFSPIKGSQYLCSGDESG--- 88 (615)
T ss_dssp ETTTTEEEEEET----------TEEEEEECCSSCCSSCSEEEECTT-----TTSCEEEEEECSSTTCCEEEEEETTS---
T ss_pred CCCCCEEEEecC----------CeEEEEECCCCCCccccceEEecC-----CCceEEEEEECcCCCCCEEEEecCCC---
Confidence 579999998751 256666665331 122223222 256 78999999 999998876532
Q ss_pred CeEEEEec--CC------cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004149 124 PIQFELWS--QS------QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 124 ~~~~~~~~--~~------~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
.+.+|+ .+ ....+.... ... +.+..+.|||||+.|+..+....
T Consensus 89 --~v~vw~~~~~~~~~~~~~~~~~~~~-~~~------~~v~~~~~s~~~~~l~~~~~~~~-------------------- 139 (615)
T 1pgu_A 89 --KVIVWGWTFDKESNSVEVNVKSEFQ-VLA------GPISDISWDFEGRRLCVVGEGRD-------------------- 139 (615)
T ss_dssp --EEEEEEEEEEGGGTEEEEEEEEEEE-CCS------SCEEEEEECTTSSEEEEEECCSS--------------------
T ss_pred --EEEEEeCCCCcccccccccccchhh-ccc------ccEEEEEEeCCCCEEEEeccCCC--------------------
Confidence 344442 22 112222211 111 12369999999999998764421
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeee
Q 004149 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 275 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~ 275 (771)
....|++|| .+.....+ ......+..+.|+||++. +++++.
T Consensus 140 --------------------~~~~v~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~----~l~~~~------------ 180 (615)
T 1pgu_A 140 --------------------NFGVFISWD-SGNSLGEV--SGHSQRINACHLKQSRPM----RSMTVG------------ 180 (615)
T ss_dssp --------------------CSEEEEETT-TCCEEEEC--CSCSSCEEEEEECSSSSC----EEEEEE------------
T ss_pred --------------------CccEEEEEE-CCCcceee--ecCCccEEEEEECCCCCc----EEEEEe------------
Confidence 235778887 33344445 344557888999999996 555542
Q ss_pred ccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCc---cccceeecCC-CCEEEEEecCCCCCCCCcccccc
Q 004149 276 YNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESIS---SAFFPRFSPD-GKFLVFLSAKSSVDSGAHSATDS 350 (771)
Q Consensus 276 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~---~~~~p~~SpD-G~~l~f~~~~~~~~~g~~~~~~~ 350 (771)
.+..|.++|+ .+++ ...+..+.. .+....|+|| |+.|+..+.+. .
T Consensus 181 --~d~~v~vwd~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~ 230 (615)
T 1pgu_A 181 --DDGSVVFYQG-----------------PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----------K 230 (615)
T ss_dssp --TTTEEEEEET-----------------TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----------C
T ss_pred --CCCcEEEEeC-----------------CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC-----------e
Confidence 3347888887 4443 445555666 7889999999 99888777553 5
Q ss_pred ceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 351 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 351 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
|.+||+.+++...... ... ......+..++|+ |++.|+ +...++. |..+|+.+++......
T Consensus 231 i~vwd~~~~~~~~~~~---------~~~------~~~~~~v~~~~~~-~~~~l~-~~~~d~~--i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIE---------DDQ------EPVQGGIFALSWL-DSQKFA-TVGADAT--IRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EEEEETTTCCEEEECC---------BTT------BCCCSCEEEEEES-SSSEEE-EEETTSE--EEEEETTTTEEEEEEE
T ss_pred EEEEECCCCCEeEEec---------ccc------cccCCceEEEEEc-CCCEEE-EEcCCCc--EEEEECCCCcEEEEEc
Confidence 8999987765422110 000 0011134567899 888664 4444444 5555887776554433
Q ss_pred CC-----CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 431 AE-----SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 431 ~~-----~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.. .......+ ++++.++....+ ..+++.++.
T Consensus 292 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~----g~i~~~d~~ 327 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVA-TGNGRIISLSLD----GTLNFYELG 327 (615)
T ss_dssp CCTTCGGGCEEEEEE-EETTEEEEEETT----SCEEEEETT
T ss_pred CCCCcccCceeEEEe-CCCCeEEEEECC----CCEEEEECC
Confidence 22 11222233 477777655542 245555544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-09 Score=115.76 Aligned_cols=206 Identities=10% Similarity=0.076 Sum_probs=128.9
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCC
Q 004149 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~ 174 (771)
..+...+|+|+ ++.||..+..+ .+.+|+ .++...+... .+..+.| .+++|+| |++.|+..+.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~-~gH~~~V------~~l~f~p~~~~~l~s~s~-- 185 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG-IGAGGSI------TGLKFNPLNTNQFYASSM-- 185 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTS-----CEEEECSSCCSCCEEECC-CSSSCCC------CEEEECSSCTTEEEEECS--
T ss_pred CCEEEEEEeCCCCCEEEEEeCCC-----EEEEEECCCCCceeEEEc-cCCCCCE------EEEEEeCCCCCEEEEEeC--
Confidence 34788999995 56676655433 456662 3333333332 1222223 7999998 6777776533
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC-CCCCCccceEEEecCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~-~~~~~~~~~~~wspDg~~ 253 (771)
+..|.+||+.++..+.+.. ......+..+.|+|||+.
T Consensus 186 ------------------------------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (435)
T 4e54_B 186 ------------------------------------------EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM 223 (435)
T ss_dssp ------------------------------------------SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE
T ss_pred ------------------------------------------CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE
Confidence 2578899999887666521 112334668899999986
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
|+..+ ....|+++|+ .+.....+..+...+.+..|+|+|+.++.
T Consensus 224 ----l~~g~---------------~dg~i~~wd~-----------------~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 224 ----VVTGD---------------NVGNVILLNM-----------------DGKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp ----EEEEC---------------SSSBEEEEES-----------------SSCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred ----EEEEe---------------CCCcEeeecc-----------------CcceeEEEecccceEEeeeecCCCceEEE
Confidence 66554 3347888998 66666777777778999999999987665
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
....+ ..|.+||+.+........... -+...+..++|+|||+.| ++...++..
T Consensus 268 s~s~d----------~~v~iwd~~~~~~~~~~~~~~----------------~h~~~v~~~~~spdg~~l-~s~~~D~~i 320 (435)
T 4e54_B 268 TASVD----------QTVKIWDLRQVRGKASFLYSL----------------PHRHPVNAACFSPDGARL-LTTDQKSEI 320 (435)
T ss_dssp EEETT----------SBCCEEETTTCCSSSCCSBCC----------------BCSSCEEECCBCTTSSEE-EEEESSSCE
T ss_pred EecCc----------ceeeEEecccccccceEEEee----------------eccccccceeECCCCCee-EEEcCCCEE
Confidence 55432 357888887655322110000 011134567899999966 455556665
Q ss_pred EEEEEECCCCcE
Q 004149 414 VIISVNVSSGEL 425 (771)
Q Consensus 414 ~l~~~d~~tg~~ 425 (771)
.|| |+.+++.
T Consensus 321 ~iw--d~~~~~~ 330 (435)
T 4e54_B 321 RVY--SASQWDC 330 (435)
T ss_dssp EEE--ESSSSSS
T ss_pred EEE--ECCCCcc
Confidence 555 6666653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=126.59 Aligned_cols=184 Identities=15% Similarity=0.229 Sum_probs=121.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+|||||++||..+..+ ...+|+... .+.... |........+.+++|||||+.||..+.++..+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg-----~V~iwd~~~--~l~~l~---~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk- 154 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG-----NVSVFKDNK--MLTNLD---SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ- 154 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS-----CEEEEETTE--EEEECC---CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE-
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCc--eeeecc---CCCccccccEEEEEEcCCCCEEEEEcCCCEEE-
Confidence 5689999999999999887655 466674322 222222 11100111236899999999999998877543
Q ss_pred CCccCCCCCCC-------CC----CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee----eccCCCCCCccc
Q 004149 179 PTFSLGSTKGG-------SS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ----AVKGIPKSLSVG 243 (771)
Q Consensus 179 ~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~----~l~~~~~~~~~~ 243 (771)
.|+....... .. ...+..|.....|+||. .+++..+..+++||+.+++.. .+. ......+.
T Consensus 155 -IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~ 230 (588)
T 2j04_A 155 -FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKIT 230 (588)
T ss_dssp -EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCC
T ss_pred -EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEE
Confidence 4443332210 11 13355688899999995 778888899999999988743 231 12345788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccce
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 322 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p 322 (771)
+++|+ |+. |+..+ ...|.++|+ .++.. .....+...+.+.
T Consensus 231 svaFs--g~~----LASa~----------------~~tIkLWd~-----------------~~~~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 231 DLKIV--DYK----VVLTC----------------PGYVHKIDL-----------------KNYSISSLKTGSLENFHII 271 (588)
T ss_dssp CEEEE--TTE----EEEEC----------------SSEEEEEET-----------------TTTEEEEEECSCCSCCCEE
T ss_pred EEEEE--CCE----EEEEe----------------CCeEEEEEC-----------------CCCeEEEEEcCCCceEEEE
Confidence 99999 554 55543 137899998 66666 3333666678889
Q ss_pred ee--cCCCCEEEEEec
Q 004149 323 RF--SPDGKFLVFLSA 336 (771)
Q Consensus 323 ~~--SpDG~~l~f~~~ 336 (771)
.| ||||+.|+-...
T Consensus 272 a~~~s~d~~~La~a~e 287 (588)
T 2j04_A 272 PLNHEKESTILLMSNK 287 (588)
T ss_dssp EETTCSSCEEEEECSS
T ss_pred EeeeCCCCCEEEEEcC
Confidence 99 999987765553
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=113.91 Aligned_cols=286 Identities=11% Similarity=0.024 Sum_probs=155.3
Q ss_pred ccceEEEeCCCC-CeEEEEecCCCCCCeEEEEecCCc-ceE-EEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSG-SKLLVVRNPENESPIQFELWSQSQ-LEK-EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
+.+...+|||++ +.||-.+.+ +.-.+|.+..... ... ...+. +..+ .+..+.|+|||+.|+..+.+..
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D--~~i~vWd~~~~~~~~~~~~~~l~-~h~~------~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRD--KTIIMWKLTRDETNYGIPQRALR-GHSH------FVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETT--SCEEEEEECCSSSCSEEEEEEEC-CCSS------CEEEEEECTTSSEEEEEETTSE
T ss_pred CCEEEEEEeCCCCCEEEEEcCC--CeEEEEECCCCCcccceeeEEEe-CCCC------CEEEEEECCCCCEEEEEccccc
Confidence 568899999984 666655443 3333444332211 111 11111 1111 2368999999999988776543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.. .|......................+.++....+++..+..+.+||+.+..............+....|++++..
T Consensus 110 i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 185 (340)
T 4aow_A 110 LR--LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN-- 185 (340)
T ss_dssp EE--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS--
T ss_pred ce--EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC--
Confidence 21 11111000000000111111122344443444455566789999988766554421233446678899999876
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
.++++- .....|.++|+ .+++ ...+..+...+.+..|||||+.|+..
T Consensus 186 --~~~~s~-------------~~d~~i~i~d~-----------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 233 (340)
T 4aow_A 186 --PIIVSC-------------GWDKLVKVWNL-----------------ANCKLKTNHIGHTGYLNTVTVSPDGSLCASG 233 (340)
T ss_dssp --CEEEEE-------------ETTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --cEEEEE-------------cCCCEEEEEEC-----------------CCCceeeEecCCCCcEEEEEECCCCCEEEEE
Confidence 444331 12336888887 4444 45556667778899999999998876
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
+.+ ..|.+||+.+.......... ..+..+.|+|++..+ .. ..++.
T Consensus 234 s~D-----------g~i~iwd~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~-~~-~~d~~-- 278 (340)
T 4aow_A 234 GKD-----------GQAMLWDLNEGKHLYTLDGG--------------------DIINALCFSPNRYWL-CA-ATGPS-- 278 (340)
T ss_dssp ETT-----------CEEEEEETTTTEEEEEEECS--------------------SCEEEEEECSSSSEE-EE-EETTE--
T ss_pred eCC-----------CeEEEEEeccCceeeeecCC--------------------ceEEeeecCCCCcee-ec-cCCCE--
Confidence 654 35888898765432110000 123456789988633 33 33444
Q ss_pred EEEEECCCCcEEEecC----------CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 415 IISVNVSSGELLRITP----------AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~----------~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|..+|+.++....-.. ....+....|++|++.|+....+ ..|++-++.++
T Consensus 279 i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----g~v~iW~~~tG 338 (340)
T 4aow_A 279 IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD----NLVRVWQVTIG 338 (340)
T ss_dssp EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT----SCEEEEEEEC-
T ss_pred EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC----CEEEEEeCCCc
Confidence 4555777665432221 11234456788999877655432 23666666554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-09 Score=113.49 Aligned_cols=246 Identities=13% Similarity=0.064 Sum_probs=139.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
.++||+.|+... ..+.+.+|++... +.. .+.. ....+...+|+|||++|+..+... ..
T Consensus 131 ~s~dg~~l~s~~---------~d~~i~iwd~~~~--~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~s~d~-----~v 189 (393)
T 1erj_A 131 FSPDGKFLATGA---------EDRLIRIWDIENR--KIVMILQG-----HEQDIYSLDYFPSGDKLVSGSGDR-----TV 189 (393)
T ss_dssp ECTTSSEEEEEE---------TTSCEEEEETTTT--EEEEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred ECCCCCEEEEEc---------CCCeEEEEECCCC--cEEEEEcc-----CCCCEEEEEEcCCCCEEEEecCCC-----cE
Confidence 356888777543 2356777776322 222 2211 124578899999999998766543 56
Q ss_pred EEec--CCcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 128 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 128 ~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
.+|+ .++..........+ ..+.|+| ||+.|+..+.+
T Consensus 190 ~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~l~~~s~d------------------------------- 228 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSIEDGV----------TTVAVSPGDGKYIAAGSLD------------------------------- 228 (393)
T ss_dssp EEEETTTTEEEEEEECSSCE----------EEEEECSTTCCEEEEEETT-------------------------------
T ss_pred EEEECCCCeeEEEEEcCCCc----------EEEEEECCCCCEEEEEcCC-------------------------------
Confidence 6663 33333333322222 5889999 89888876432
Q ss_pred cCCcCcccCCccCceEEEEEccCCceeec-c-----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004149 205 EEDWGETYAGKRQPSLFVININSGEVQAV-K-----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~-----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
..|.+||+.+++.... . .......+..++|+|||+. |+..+ .
T Consensus 229 -------------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~----l~s~s---------------~ 276 (393)
T 1erj_A 229 -------------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS----VVSGS---------------L 276 (393)
T ss_dssp -------------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE----EEEEE---------------T
T ss_pred -------------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE----EEEEe---------------C
Confidence 5688899888765432 1 0123346788999999997 76554 2
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 279 PCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
+..|.++|+.... ... .......+. ...+..+...+.+..|+|+|++|+..+.+ ..|++||+.
T Consensus 277 d~~v~~wd~~~~~----~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-----------~~v~iwd~~ 340 (393)
T 1erj_A 277 DRSVKLWNLQNAN----NKS-DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----------RGVLFWDKK 340 (393)
T ss_dssp TSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----------SEEEEEETT
T ss_pred CCEEEEEECCCCC----Ccc-cccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-----------CeEEEEECC
Confidence 2367777762100 000 000001111 22344455668889999999998876655 358899988
Q ss_pred CCCCCCCcccee-eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 358 TNGNFSSLEKIV-DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 358 ~~~~~~~~~~~~-~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
+++......+.. .+..+. -.....|+|++. ++++...++...||.+.
T Consensus 341 ~~~~~~~l~~h~~~v~~v~--------------~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 341 SGNPLLMLQGHRNSVISVA--------------VANGSSLGPEYN-VFATGSGDCKARIWKYK 388 (393)
T ss_dssp TCCEEEEEECCSSCEEEEE--------------ECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred CCeEEEEECCCCCCEEEEE--------------ecCCcCcCCCCC-EEEEECCCCcEEECccc
Confidence 765422111110 000000 001224566776 55677778888888765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-09 Score=113.75 Aligned_cols=239 Identities=12% Similarity=0.106 Sum_probs=151.1
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....||+ ..++.....+ .+.+| ..++...+..... . +.+.+++|+|||+.|+..+.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~~~--~------~~v~~v~~s~~~~~l~~~~~------ 154 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALER-----NVYVWNADSGSVSALAETDE--S------TYVASVKWSHDGSFLSVGLG------ 154 (401)
T ss_dssp CBCEEECT--TSEEEEEETT-----EEEEEETTTCCEEEEEECCT--T------CCEEEEEECTTSSEEEEEET------
T ss_pred EEEEeecC--CCEEEEECCC-----eEEEeeCCCCcEeEeeecCC--C------CCEEEEEECCCCCEEEEECC------
Confidence 34466775 4455544332 34555 4455555544321 1 12369999999999988643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...|.+||+.+++..... ......+..+.| +++. |
T Consensus 155 --------------------------------------dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l 189 (401)
T 4aez_A 155 --------------------------------------NGLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHV----L 189 (401)
T ss_dssp --------------------------------------TSCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTE----E
T ss_pred --------------------------------------CCeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCE----E
Confidence 257899999887754442 344456777888 4554 5
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..+ ....|.++|+.. .......+..+...+....|+|||+.|+..+.+.
T Consensus 190 ~~~~---------------~dg~i~i~d~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 190 SSGS---------------RSGAIHHHDVRI---------------ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp EEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEc---------------CCCCEEEEeccc---------------CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 5544 334788888720 1223455666777889999999999988877653
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|.+||+.++........ ....+..++|+|++..++++........|..+
T Consensus 240 -----------~v~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 240 -----------VVQIWDARSSIPKFTKTN-------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp -----------CEEEEETTCSSEEEEECC-------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred -----------eEEEccCCCCCccEEecC-------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 488999877543211000 01135678899999888777642233456777
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
|+.+++..........+....|+++++.++.+....+ ..+.+.++.+
T Consensus 290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d--g~i~v~~~~~ 336 (401)
T 4aez_A 290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD--NNLSIWSYSS 336 (401)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT--CEEEEEEEET
T ss_pred ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC--CcEEEEecCC
Confidence 8888887665555555677789999998887653333 3566666654
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-11 Score=134.21 Aligned_cols=133 Identities=23% Similarity=0.249 Sum_probs=93.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCC-CCCCCChhhhhcCCCCcc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~r-G~~~~g~~~~~~~~~~~~ 593 (771)
+.|++.+ .+|.|......++.|+||++|||++...............+.|++|+.+||| |..++......... +
T Consensus 95 ~edcl~l--nv~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~~~la~~~g~vvv~~nYRlg~~gf~~~~~~~~~---~ 169 (542)
T 2h7c_A 95 SEDCLYL--NIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSR---G 169 (542)
T ss_dssp ESCCCEE--EEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCC---C
T ss_pred CCCCcEE--EEEECCCCCCCCCCCEEEEECCCcccCCCccccCHHHHHhcCCEEEEecCCCCccccCCCCCcccCc---c
Confidence 3455555 5788976544578999999999887654332211122334579999999999 43223222111112 2
Q ss_pred ccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCccc
Q 004149 594 SQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 652 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~ 652 (771)
...+.|+.++++|+.++ ...|++||.|+|+|+||.++..++.. .+.+|+++|+.+|...
T Consensus 170 n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 170 NWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 33478999999999875 24799999999999999999998875 3578999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-09 Score=112.42 Aligned_cols=204 Identities=9% Similarity=0.040 Sum_probs=129.2
Q ss_pred ccceEEEeCCCC-CeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCC
Q 004149 99 TGASAVVPSPSG-SKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~ 174 (771)
..+...+|||+| +.||.....+ .+.+| ..+......... +..+ .+.++.|+| |++.|+..+.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~~l~s~~~-- 139 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGG-----DIILWDYDVQNKTSFIQGM-GPGD------AITGMKFNQFNTNQLFVSSI-- 139 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTS-----CEEEEETTSTTCEEEECCC-STTC------BEEEEEEETTEEEEEEEEET--
T ss_pred CCEEEEEECCCCCCEEEEEcCCC-----eEEEEeCCCcccceeeecC-CcCC------ceeEEEeCCCCCCEEEEEeC--
Confidence 457889999999 7777665533 35555 333444443321 1111 236899999 6676666532
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEG 253 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~ 253 (771)
...|.+||+.++....+.... ....+..++|+||++.
T Consensus 140 ------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 177 (383)
T 3ei3_B 140 ------------------------------------------RGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQM 177 (383)
T ss_dssp ------------------------------------------TTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTE
T ss_pred ------------------------------------------CCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCE
Confidence 267899999987776663211 1245788999999997
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC-EEE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK-FLV 332 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~-~l~ 332 (771)
|+..+ .+..|+++|+ .+.....+..+...+....|+|+|+ .|+
T Consensus 178 ----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 178 ----LATGD---------------STGRLLLLGL-----------------DGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp ----EEEEE---------------TTSEEEEEET-----------------TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred ----EEEEC---------------CCCCEEEEEC-----------------CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 77655 3347999997 5566677777777899999999999 555
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc-CCCEEEEEeeeCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGS 411 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~-dg~~l~~~~~~~~ 411 (771)
..+.+ ..|.+||+.+.+.... ...... ....+..++|+| ||+.|+ +...++
T Consensus 222 s~~~d-----------~~i~iwd~~~~~~~~~------~~~~~~----------~~~~v~~~~~s~~~~~~l~-~~~~d~ 273 (383)
T 3ei3_B 222 TSSVD-----------ATVKLWDLRNIKDKNS------YIAEMP----------HEKPVNAAYFNPTDSTKLL-TTDQRN 273 (383)
T ss_dssp EEETT-----------SEEEEEEGGGCCSTTC------EEEEEE----------CSSCEEEEEECTTTSCEEE-EEESSS
T ss_pred EEeCC-----------CEEEEEeCCCCCcccc------eEEEec----------CCCceEEEEEcCCCCCEEE-EEcCCC
Confidence 54433 3588899876442111 011000 011345778999 998665 444454
Q ss_pred eeEEEEEECCCCc
Q 004149 412 SQVIISVNVSSGE 424 (771)
Q Consensus 412 ~~~l~~~d~~tg~ 424 (771)
. |..+|+.+++
T Consensus 274 ~--i~iwd~~~~~ 284 (383)
T 3ei3_B 274 E--IRVYSSYDWS 284 (383)
T ss_dssp E--EEEEETTBTT
T ss_pred c--EEEEECCCCc
Confidence 4 5555776654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.7e-10 Score=128.81 Aligned_cols=244 Identities=11% Similarity=0.054 Sum_probs=148.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCc----ceE-EEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQ----LEK-EFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~---~~~----~~~-~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+...+|+|++..+++....+ + .+.+|+ ... ..+ +...... +.+++|||||+.|+..
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D-~---~i~~W~~~~~~~~~~~~~~~~~~h~~~----------v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRD-K---SIILWKLTKDDKAYGVAQRRLTGHSHF----------VEDVVLSSDGQFALSG 448 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETT-S---EEEEEECCCSTTCSCEEEEEEECCSSC----------EEEEEECTTSSEEEEE
T ss_pred ceeEEEEecCCCCCEEEEEeCC-C---cEEEEEccCCCcccccccceecCCCCc----------EEEEEECCCCCEEEEE
Confidence 5588899999875544433322 2 455552 111 111 1111122 2689999999999988
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc--CCCCCCccceEEEe
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWA 248 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~ws 248 (771)
+.+...+ .|+............+........|+++....+++..+..|.+||+.+.....+. .......+..+.|+
T Consensus 449 s~Dg~v~--vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 449 SWDGELR--LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp ETTSEEE--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred eCCCcEE--EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 7765433 3443222222222334444556778888777777788899999998776555442 01223357789999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCC
Q 004149 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpD 327 (771)
|++... +++++. .+..|.++|+ .+++ ...+..+...+.+..||||
T Consensus 527 ~~~~~~---~l~s~s--------------~d~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~v~~spd 572 (694)
T 3dm0_A 527 PNTLQP---TIVSAS--------------WDKTVKVWNL-----------------SNCKLRSTLAGHTGYVSTVAVSPD 572 (694)
T ss_dssp SCSSSC---EEEEEE--------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCCCcc---eEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEcCCCCCEEEEEEeCC
Confidence 998430 344331 2346888887 4444 4556667778999999999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
|+.|+..+.+. .|.+||+.+++....... ...+..++|+||+..|+. +
T Consensus 573 g~~l~sg~~Dg-----------~i~iwd~~~~~~~~~~~~--------------------~~~v~~~~~sp~~~~l~~-~ 620 (694)
T 3dm0_A 573 GSLCASGGKDG-----------VVLLWDLAEGKKLYSLEA--------------------NSVIHALCFSPNRYWLCA-A 620 (694)
T ss_dssp SSEEEEEETTS-----------BCEEEETTTTEEEECCBC--------------------SSCEEEEEECSSSSEEEE-E
T ss_pred CCEEEEEeCCC-----------eEEEEECCCCceEEEecC--------------------CCcEEEEEEcCCCcEEEE-E
Confidence 99988777553 588999877653211000 012346789999985543 3
Q ss_pred eeCCeeEEEEEECCCCcEEE
Q 004149 408 IWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~~ 427 (771)
. ++. |..+|+.+++...
T Consensus 621 ~-~~~--i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 621 T-EHG--IKIWDLESKSIVE 637 (694)
T ss_dssp E-TTE--EEEEETTTTEEEE
T ss_pred c-CCC--EEEEECCCCCChh
Confidence 2 333 6666888876543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-09 Score=116.89 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=115.6
Q ss_pred ceEEEEEccCCc--------eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 218 PSLFVININSGE--------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 218 ~~l~v~d~~~~~--------~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..|.+||+.++. ...+ ......+..+.|+|||+. +++++. .+..|.++|+
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~----~l~s~~--------------~dg~i~iwd~-- 161 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWHPTAQN----VLLSAG--------------CDNVILVWDV-- 161 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEECSSBTT----EEEEEE--------------TTSCEEEEET--
T ss_pred CeEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEECcCCCC----EEEEEc--------------CCCEEEEEEC--
Confidence 578999988763 2333 234456888999999976 666652 2347888898
Q ss_pred ccchhhhhhhhcCCCCCCc-ceec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcc
Q 004149 290 YKSEASELELKESSSEDLP-VVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 366 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 366 (771)
.+++ ...+ ..+...+....|+|||+.|+..+.+ ..|.+||+.+++....
T Consensus 162 ---------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~-- 213 (402)
T 2aq5_A 162 ---------------GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----------KRVRVIEPRKGTVVAE-- 213 (402)
T ss_dssp ---------------TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----------SEEEEEETTTTEEEEE--
T ss_pred ---------------CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----------CcEEEEeCCCCceeee--
Confidence 4444 3455 4566778999999999999887755 3589999877553111
Q ss_pred ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE--EEec-CCCCCceeeEEeec
Q 004149 367 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL--LRIT-PAESNFSWSLLTLD 443 (771)
Q Consensus 367 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~--~~l~-~~~~~~~~~~~s~d 443 (771)
+.... .. ..+..+.|+||++.|+..........|..+|+.+++. .... .....+....|+++
T Consensus 214 -------~~~~~-~~-------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 214 -------KDRPH-EG-------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp -------EECSS-CS-------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred -------eccCC-CC-------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence 00000 00 1135678999998555443223445677778877553 2222 22334566789999
Q ss_pred CCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 444 GDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 444 ~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
++.|+++.... ..|.+.++.++
T Consensus 279 ~~~l~~~g~~d---g~i~i~d~~~~ 300 (402)
T 2aq5_A 279 TNIVYLCGKGD---SSIRYFEITSE 300 (402)
T ss_dssp TTEEEEEETTC---SCEEEEEECSS
T ss_pred CCEEEEEEcCC---CeEEEEEecCC
Confidence 99887766432 35777776544
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-10 Score=112.79 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=69.2
Q ss_pred cEEEEEcCCCCCCCC-CcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 538 PLIVVLHGGPHSVSL-SSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 538 p~vv~~HGg~~~~~~-~~~~~~~~~la~~--G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+.||++||.+.+... ..|...+..|++. |+.|+++|+ | +|.+..... .+.....+++...++.+......
T Consensus 6 ~pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G---~g~s~~~~~--~~~~~~~~~~~~~~~~l~~~~~l- 78 (279)
T 1ei9_A 6 LPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-G---KTLREDVEN--SFFLNVNSQVTTVCQILAKDPKL- 78 (279)
T ss_dssp CCEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-S---SSHHHHHHH--HHHSCHHHHHHHHHHHHHSCGGG-
T ss_pred CcEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-C---CCCcccccc--ccccCHHHHHHHHHHHHHhhhhc-
Confidence 348999997655322 4688888888765 889999997 7 554321000 00011123333444444332111
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCc-eeEEEecCCc
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPL 650 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~-~~a~v~~~p~ 650 (771)
.+++.|+||||||.++..++.++|+. ++.+|+.++.
T Consensus 79 ~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~p 115 (279)
T 1ei9_A 79 QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 115 (279)
T ss_dssp TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCC
T ss_pred cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecCc
Confidence 26899999999999999999999984 9999877653
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-11 Score=132.99 Aligned_cols=226 Identities=15% Similarity=0.092 Sum_probs=126.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-ch--HHHH-HHH-HCCcEEEEECCCCCC-CCC--hhhhh
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSLA-FLS-SVGYSLLIVNYRGSL-GFG--EEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~--~~~~-~la-~~G~~V~~~d~rG~~-~~g--~~~~~ 586 (771)
+.|.+.+ .+|.|......++.|+||++|||++...... +. .++. .++ ..|++|+.+|||... ++. .....
T Consensus 102 sedcl~l--~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~~gf~~~~~~~~ 179 (544)
T 1thg_A 102 NEDCLYL--NVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CSCCCEE--EEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCCCeEE--EEEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCcccCCCcccccc
Confidence 4455555 5788875444567899999999987654332 21 1222 222 358999999999643 110 00001
Q ss_pred cCCCCccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCccchhh
Q 004149 587 SLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~~~~~ 655 (771)
.. .+...+.|+.++++|+.++. ..|++||.|+|+|.||.+++.++... ..+|+++|+.+|......
T Consensus 180 ~~---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~ 256 (544)
T 1thg_A 180 EG---NTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPYH 256 (544)
T ss_dssp HT---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCCS
T ss_pred cC---CCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccccccC
Confidence 11 22334889999999998862 37999999999999999998877652 457999999998542111
Q ss_pred hhcCCCCC-cc-hhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccC-----------CCCcEEEEeeCCCCccCcHH
Q 004149 656 MVGTTDIP-DW-CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-----------VKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 656 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-----------i~~P~Lii~G~~D~~vp~~~ 722 (771)
........ .+ .+....++... ....+..+.++..++...+.. .....+......|..+.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~gc~~~-----~~~~~~~~cLr~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~P~~Dg~~l~~~ 331 (544)
T 1thg_A 257 DSSSVGPDISYNRFAQYAGCDTS-----ASANDTLECLRSKSSSVLHDAQNSYDLKDLFGLLPQFLGFGPRPDGNIIPDA 331 (544)
T ss_dssp SSCCSSSSCHHHHHHHHHTCCTT-----SCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTTSCGGGTSCCCCCSSSSCSC
T ss_pred cCChHHHHHHHHHHHHHhCCCCC-----CCcHHHHHHHhcCCHHHHHHhhhhcccccccccccccccceeeeCCcccCcC
Confidence 11100100 11 11222222100 000012223333332211100 00000112334455555666
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 723 GLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
..++.+..+..++++.+-...+++|.+.
T Consensus 332 p~~~~~~g~~~~vp~l~G~~~~Eg~~f~ 359 (544)
T 1thg_A 332 AYELFRSGRYAKVPYISGNQEDEGTAFA 359 (544)
T ss_dssp HHHHHHTTCSCCCCEEEEEETBTTTTTG
T ss_pred HHHHHhcCCCCCccEEEEeecCchhhhc
Confidence 6676666656677888878888888764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-09 Score=112.16 Aligned_cols=241 Identities=11% Similarity=0.046 Sum_probs=145.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc----ceEEEecCCcccccccCCCcccceeecCCCC-eEEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~ 173 (771)
+.+...+|||||+.|+.....+ .-.+|.+. .+. ...+...... +.+++|+|||+ .|+..+.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~--~v~iw~~~-~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~- 77 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDG--SLTVYKFD-IQAKNVDLLQSLRYKHP----------LLCCNFIDNTDLQIYVGTV- 77 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTS--EEEEEEEE-TTTTEEEEEEEEECSSC----------EEEEEEEESSSEEEEEEET-
T ss_pred CcEEEEEEcCCCCEEEEEcCCC--eEEEEEeC-CCCccccceeeeecCCc----------eEEEEECCCCCcEEEEEcC-
Confidence 4588899999999998775433 22233332 333 2222222222 26899999999 8887643
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc-cCCceeeccCCCCCCccceEEEecCCC
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~-~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
...|++||+ .+++...+.+......+..+.|+| ++
T Consensus 78 -------------------------------------------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~ 113 (342)
T 1yfq_A 78 -------------------------------------------QGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DD 113 (342)
T ss_dssp -------------------------------------------TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TT
T ss_pred -------------------------------------------CCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CC
Confidence 257999999 999887773211556788999999 77
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC---------CcceecCCCCcccccee
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED---------LPVVNLTESISSAFFPR 323 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---------~~~~~lt~~~~~~~~p~ 323 (771)
. |+..+ .+..|.++|+ .+ ++..........+....
T Consensus 114 ~----l~s~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 114 K----LIAAS---------------WDGLIEVIDP-----------------RNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp E----EEEEE---------------TTSEEEEECH-----------------HHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred E----EEEEc---------------CCCeEEEEcc-----------------cccccccccccCCeeeEEeeCCceEEEE
Confidence 5 66554 3347888887 22 33222223556688899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc-CCC
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGC 401 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~-dg~ 401 (771)
|+|++ |+..+.+ ..|.+||+.+ +........ . . ....+..++|+| |++
T Consensus 158 ~~~~~--l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~---------~----~----~~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 158 TNSSR--LIVGMNN-----------SQVQWFRLPLCEDDNGTIEE---------S----G----LKYQIRDVALLPKEQE 207 (342)
T ss_dssp ECSSE--EEEEEST-----------TEEEEEESSCCTTCCCEEEE---------C----S----CSSCEEEEEECSGGGC
T ss_pred ecCCc--EEEEeCC-----------CeEEEEECCccccccceeee---------c----C----CCCceeEEEECCCCCC
Confidence 99998 5555433 3588999876 432110000 0 0 001245678999 998
Q ss_pred EEEEEeeeCCeeEEEEEECC-----CCcEEEecCCCC---------CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 402 TMLLSSIWGSSQVIISVNVS-----SGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~-----tg~~~~l~~~~~---------~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
.| ++...++...+|.++.. ......+..... .+....|+++++.|+....+ ..|++.++.+
T Consensus 208 ~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~ 282 (342)
T 1yfq_A 208 GY-ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD----GIISCWNLQT 282 (342)
T ss_dssp EE-EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT----SCEEEEETTT
T ss_pred EE-EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC----ceEEEEcCcc
Confidence 55 45555777777776654 133334433321 45556788888877655432 2466766654
Q ss_pred c
Q 004149 468 K 468 (771)
Q Consensus 468 ~ 468 (771)
+
T Consensus 283 ~ 283 (342)
T 1yfq_A 283 R 283 (342)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-09 Score=109.96 Aligned_cols=276 Identities=14% Similarity=0.102 Sum_probs=145.9
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHG 147 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g 147 (771)
.++.|.+|++.......... ...+......+....|||||++|+...... ...+|.. .............
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~-~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~~~~~-- 130 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIP-QRALRGHSHFVSDVVISSDGQFALSGSWDG-----TLRLWDLTTGTTTRRFVGHTKD-- 130 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEE-EEEECCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC--
T ss_pred CCCeEEEEECCCCCccccee-eEEEeCCCCCEEEEEECCCCCEEEEEcccc-----cceEEeecccceeeeecCCCCc--
Confidence 44567777775443221110 011111225688899999999998766543 4455522 2222222211111
Q ss_pred cccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC-CCCCccCCCCCCcccccCCcCcc--cCCccCceEEEEE
Q 004149 148 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGET--YAGKRQPSLFVIN 224 (771)
Q Consensus 148 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~g~~--~~~~~~~~l~v~d 224 (771)
.....++|+++.|+..+.+.... .|+...... ......+........|.++.... +.+.....|.+||
T Consensus 131 -------~~~~~~~~~~~~l~s~s~d~~~~--~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d 201 (340)
T 4aow_A 131 -------VLSVAFSSDNRQIVSGSRDKTIK--LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201 (340)
T ss_dssp -------EEEEEECTTSSCEEEEETTSCEE--EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred -------eeEEEEeecCccceeecCCCeEE--EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence 14778999999998877654322 122110000 00111111222223344443222 2344567899999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCC
Q 004149 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 304 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 304 (771)
+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 202 ~~~~~~~~~~-~~h~~~v~~~~~s~~~~~----l~s~s---------------~Dg~i~iwd~----------------- 244 (340)
T 4aow_A 202 LANCKLKTNH-IGHTGYLNTVTVSPDGSL----CASGG---------------KDGQAMLWDL----------------- 244 (340)
T ss_dssp TTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTCEEEEEET-----------------
T ss_pred CCCCceeeEe-cCCCCcEEEEEECCCCCE----EEEEe---------------CCCeEEEEEe-----------------
Confidence 9988765542 334456788999999996 66655 3347888887
Q ss_pred CCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCc
Q 004149 305 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 384 (771)
Q Consensus 305 ~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 384 (771)
.+.+..........+....|+|++..++ .+.+ ..|.+||+.++......... .. ...+.
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d-----------~~i~iwd~~~~~~~~~~~~~--~~-------~~~~~ 303 (340)
T 4aow_A 245 NEGKHLYTLDGGDIINALCFSPNRYWLC-AATG-----------PSIKIWDLEGKIIVDELKQE--VI-------STSSK 303 (340)
T ss_dssp TTTEEEEEEECSSCEEEEEECSSSSEEE-EEET-----------TEEEEEETTTTEEEEEECCC----------------
T ss_pred ccCceeeeecCCceEEeeecCCCCceee-ccCC-----------CEEEEEECCCCeEEEecccc--ce-------eeecc
Confidence 4444433333445677889999987554 3322 34888888765431110000 00 00000
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 385 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 385 g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
.....+..++|+|||+.| ++...++...||.+ .+|+
T Consensus 304 -~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~--~tGt 339 (340)
T 4aow_A 304 -AEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQV--TIGT 339 (340)
T ss_dssp -CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEE--EC--
T ss_pred -CCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeC--CCcC
Confidence 011234567899999865 55666777677754 4554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-09 Score=115.68 Aligned_cols=273 Identities=12% Similarity=0.051 Sum_probs=154.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCc------ceEEEec-CCcccccccCCCcccceeecCC----C-
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ------LEKEFHV-PQTVHGSVYADGWFEGISWNSD----E- 164 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~------~~~~~~~-~~~~~g~~~~~~~~~~~~wSpD----g- 164 (771)
..+...+|+| +.|+..+..+ .+.+| ..+. ....+.. ... +.++.|+|| |
T Consensus 17 ~~i~~~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFVHKSG----------LHHVDVLQAIERDAF 79 (397)
T ss_dssp SCEEEEEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEECCTTC----------EEEEEEEEEEETTTE
T ss_pred cCeEEEEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEecCCCc----------EEEEEEecccccCCc
Confidence 4578899999 6776655433 44555 3333 2222221 222 268999999 9
Q ss_pred --CeEEEEecCCCCCCCCccCCCCCC-----CCCCccC-----CCCCCccccc----CCcCc-ccCCccCceEEEEEccC
Q 004149 165 --TLIAYVAEEPSPSKPTFSLGSTKG-----GSSDKDC-----NSWKGQGDWE----EDWGE-TYAGKRQPSLFVININS 227 (771)
Q Consensus 165 --~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~----~d~g~-~~~~~~~~~l~v~d~~~ 227 (771)
+.|+..+.+.... .|+...... ......+ ........|. ++... .+++.....|++||+.+
T Consensus 80 ~~~~l~s~~~dg~i~--iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 80 ELCLVATTSFSGDLL--FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEEETTSCEE--EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred cccEEEEEcCCCCEE--EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9888877655332 233211111 1111112 1334456788 88666 66777788999999987
Q ss_pred ------Ccee------eccC-----CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004149 228 ------GEVQ------AVKG-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 228 ------~~~~------~l~~-----~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
++.. .+.+ ......+..+.|+||| . |+..+ ....|+++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~----l~~~~---------------~dg~i~i~d~--- 214 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L----IATGF---------------NNGTVQISEL--- 214 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E----EEEEC---------------TTSEEEEEET---
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e----EEEEe---------------CCCcEEEEEC---
Confidence 4432 2211 1234467889999999 8 88776 3347888998
Q ss_pred cchhhhhhhhcCCCCCCcc-eecCC---C---CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 291 KSEASELELKESSSEDLPV-VNLTE---S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~lt~---~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.+++. ..+.. + ...+....|+|||+.|+..+.+. ....|.+||+.+++...
T Consensus 215 --------------~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--------~~g~i~i~d~~~~~~~~ 272 (397)
T 1sq9_A 215 --------------STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--------SFGCITLYETEFGERIG 272 (397)
T ss_dssp --------------TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--------TEEEEEEEETTTCCEEE
T ss_pred --------------CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--------CCceEEEEECCCCcccc
Confidence 44443 34444 4 66788999999999988776541 11468999988765321
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-------C-----
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-------A----- 431 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-------~----- 431 (771)
............ -..+ .....+..++|+||++.|+ +...++ .|..+|+.+++...... .
T Consensus 273 ~~~~~~~~~~~~----~~~~--~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 273 SLSVPTHSSQAS----LGEF--AHSSWVMSLSFNDSGETLC-SAGWDG--KLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp EECBC------------CCB--SBSSCEEEEEECSSSSEEE-EEETTS--EEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred eeccCccccccc----cccc--ccCCcEEEEEECCCCCEEE-EEeCCC--eEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 111100000000 0000 0112345788999998664 444444 45556887777554433 2
Q ss_pred ----------CCCceeeEEeecC
Q 004149 432 ----------ESNFSWSLLTLDG 444 (771)
Q Consensus 432 ----------~~~~~~~~~s~d~ 444 (771)
...+....|++++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTT
T ss_pred ccccccccccCCceeEEEecccc
Confidence 3345667888887
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-08 Score=106.52 Aligned_cols=275 Identities=7% Similarity=-0.093 Sum_probs=152.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCC--ccceeecCCccccccceEEEeCCCCC-eEEEEecCCCCCCeE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN--SVTFQWAPFPVEMTGASAVVPSPSGS-KLLVVRNPENESPIQ 126 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~~~~~~~~~SPdG~-~la~~~~~~~~~~~~ 126 (771)
++||..|+... ..+.+++|++...... ...+... ...+...+|+|+|+ .|+.....+ .
T Consensus 20 s~~~~~l~~~~---------~d~~v~iw~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg-----~ 80 (342)
T 1yfq_A 20 IPSKSLLLITS---------WDGSLTVYKFDIQAKNVDLLQSLRY-----KHPLLCCNFIDNTDLQIYVGTVQG-----E 80 (342)
T ss_dssp EGGGTEEEEEE---------TTSEEEEEEEETTTTEEEEEEEEEC-----SSCEEEEEEEESSSEEEEEEETTS-----C
T ss_pred cCCCCEEEEEc---------CCCeEEEEEeCCCCccccceeeeec-----CCceEEEEECCCCCcEEEEEcCCC-----e
Confidence 45777766542 3356777777544311 2222222 25688899999999 887765433 3
Q ss_pred EEEe-c-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 127 FELW-S-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 127 ~~~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+.+| . .......+.. .... ..+..+.|+| ++.|+..+.
T Consensus 81 i~~wd~~~~~~~~~~~~-~~~~------~~v~~l~~~~-~~~l~s~~~-------------------------------- 120 (342)
T 1yfq_A 81 ILKVDLIGSPSFQALTN-NEAN------LGICRICKYG-DDKLIAASW-------------------------------- 120 (342)
T ss_dssp EEEECSSSSSSEEECBS-CCCC------SCEEEEEEET-TTEEEEEET--------------------------------
T ss_pred EEEEEeccCCceEeccc-cCCC------CceEEEEeCC-CCEEEEEcC--------------------------------
Confidence 4455 3 3322222211 0011 1236899999 888887643
Q ss_pred cCCcCcccCCccCceEEEEEccC---------CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeee
Q 004149 205 EEDWGETYAGKRQPSLFVININS---------GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 275 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~---------~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~ 275 (771)
...|.+||+.+ ++.... ......+..+.|+|++ |+..+
T Consensus 121 ------------d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~------l~~~~------------- 167 (342)
T 1yfq_A 121 ------------DGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR------LIVGM------------- 167 (342)
T ss_dssp ------------TSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE------EEEEE-------------
T ss_pred ------------CCeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc------EEEEe-------------
Confidence 25788999876 554433 3345567788999875 44443
Q ss_pred ccCCceeEEEecccccchhhhhhhhcCCCCC-Cc---ceecCCCCccccceeecC-CCCEEEEEecCCCCCCCCcccccc
Q 004149 276 YNRPCALYAVRVSLYKSEASELELKESSSED-LP---VVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDS 350 (771)
Q Consensus 276 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~---~~~lt~~~~~~~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~ 350 (771)
....|+++|+ .. +. ..........+....|+| ||+.|+..+.+. .
T Consensus 168 --~d~~i~i~d~-----------------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-----------~ 217 (342)
T 1yfq_A 168 --NNSQVQWFRL-----------------PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-----------R 217 (342)
T ss_dssp --STTEEEEEES-----------------SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-----------E
T ss_pred --CCCeEEEEEC-----------------CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-----------c
Confidence 2347888887 33 22 123334455688999999 999888777542 4
Q ss_pred ceeeecCCCCCCCCccceeeEEecccccCCCCCcc-cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 351 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG-LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 351 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
|.+|++..+.......... . +...... ..+ -....+..++|+||++.|+ +...++. |+.+|+.+++.....
T Consensus 218 i~i~~~~~~~~~~~~~~~~-~---~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~--i~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRF-A---FRCHRLN-LKDTNLAYPVNSIEFSPRHKFLY-TAGSDGI--ISCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEEECCTTCCSTTCTTCE-E---EECCCCC-TTCCSSCCCEEEEEECTTTCCEE-EEETTSC--EEEEETTTTEEEEEC
T ss_pred EEEEEEcCCCcccccccce-e---eeccccc-ccccccceeEEEEEEcCCCCEEE-EecCCce--EEEEcCccHhHhhhh
Confidence 6777766541000000000 0 0000000 000 0011345678999998664 4444444 555688888765544
Q ss_pred CCC-CCceeeEEeecCCEEEEEEeCCC
Q 004149 430 PAE-SNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 430 ~~~-~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
... .. ....+.++++.|+....+..
T Consensus 290 ~~~h~~-~v~~~~~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 290 AKFNED-SVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp CCCSSS-EEEEEEECSSEEEEEEECTH
T ss_pred hcccCC-CceEecCCCCeEEEEecCCc
Confidence 432 21 12223388888877765543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-08 Score=106.03 Aligned_cols=261 Identities=12% Similarity=0.140 Sum_probs=138.7
Q ss_pred cccceeEEEEEEeecCCCCccc-eeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-------cceEE
Q 004149 67 ANKRKKFMLSTVISKENENSVT-FQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-------QLEKE 138 (771)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-------~~~~~ 138 (771)
.....+.+.++++..+...... +... .....+...+|||+|+.||..+... .+.+|+-. ....+
T Consensus 29 s~~~D~~i~lw~~~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 29 TGSTDRKIKLVSVKYDDFTLIDVLDET---AHKKAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEESSSCEEEEECSSSCCEEEEEECTT---CCCSCEEEEEECTTSSEEEEEETTS-----CEEEEEC-------CCCEEE
T ss_pred EEcCCCEEEEEEecCCCeEEEEEEecC---CccCCEEEEEECCCCCEEEEEeCCC-----cEEEEEcccCcCccccceeE
Confidence 3344566777776433211111 1111 0224588899999999998776543 34555211 11111
Q ss_pred EecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCc
Q 004149 139 FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 218 (771)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~ 218 (771)
..+. +..+ .+.+++|||||++|+..+.+ .
T Consensus 101 ~~~~-~h~~------~V~~v~~sp~g~~las~s~D--------------------------------------------~ 129 (330)
T 2hes_X 101 AIIE-GHEN------EVKGVAWSNDGYYLATCSRD--------------------------------------------K 129 (330)
T ss_dssp EEEC-----------CEEEEEECTTSCEEEEEETT--------------------------------------------S
T ss_pred EEEc-CCCC------cEEEEEECCCCCEEEEEeCC--------------------------------------------C
Confidence 1111 1111 23689999999999886543 5
Q ss_pred eEEEEEcc-CCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 219 SLFVININ-SGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 219 ~l~v~d~~-~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
.|.+||+. ++. ...+ ......+..+.|+||++. |+..+. +..|.++|+
T Consensus 130 ~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----l~s~s~---------------D~~i~iW~~------ 182 (330)
T 2hes_X 130 SVWIWETDESGEEYECISVL--QEHSQDVKHVIWHPSEAL----LASSSY---------------DDTVRIWKD------ 182 (330)
T ss_dssp CEEEEECCTTCCCCEEEEEE--CCCSSCEEEEEECSSSSE----EEEEET---------------TSCEEEEEE------
T ss_pred EEEEEeccCCCCCeEEEEEe--ccCCCceEEEEECCCCCE----EEEEcC---------------CCeEEEEEC------
Confidence 68889984 322 2233 334456888999999987 776652 225666665
Q ss_pred hhhhhhhcCCCCCC---cceecCCCCccccceeecCC--CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 294 ASELELKESSSEDL---PVVNLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 294 ~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~SpD--G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
..+ ....+..+...+....|+|+ +..|+..+.+. .|.+||+.++..... ..
T Consensus 183 -----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-----------~v~iw~~~~~~~~~~--~~ 238 (330)
T 2hes_X 183 -----------YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-----------TVRVWKYMGDDEDDQ--QE 238 (330)
T ss_dssp -----------ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-----------CEEEEEEEEECTTSC--EE
T ss_pred -----------CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-----------eEEEEEecCCCcccc--ce
Confidence 222 23456667777889999999 66676665543 477777654322100 00
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE---ecC-CCC-CceeeEEee-
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR---ITP-AES-NFSWSLLTL- 442 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~---l~~-~~~-~~~~~~~s~- 442 (771)
......+ ++.+...+..++|++++ ++++...++...||.+. +++.+. ... ... .+....|++
T Consensus 239 ~~~~~~~--------~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 239 WVCEAIL--------PDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEV--DGEWKVFAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEEEEEC--------CSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEE--TTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred eEEeeec--------ccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcC--CCceEEEeccccccccceEEEEEEecC
Confidence 0011111 11111234567899765 44566667777777654 554322 212 222 344456777
Q ss_pred -cCCEEEE
Q 004149 443 -DGDNIIA 449 (771)
Q Consensus 443 -d~~~l~~ 449 (771)
+++.|+.
T Consensus 307 ~~~~~las 314 (330)
T 2hes_X 307 NGKTILAT 314 (330)
T ss_dssp ---CCEEE
T ss_pred CCceEEEE
Confidence 4544443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.6e-10 Score=118.63 Aligned_cols=271 Identities=10% Similarity=0.016 Sum_probs=144.8
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcc---eEEEecCC
Q 004149 67 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL---EKEFHVPQ 143 (771)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 143 (771)
.....+.+.+|++.... ....+... ...+...+|||||++||..... +...+|.+...... ..+...-.
T Consensus 83 s~s~D~~v~iWd~~~~~-~~~~~~~h-----~~~v~~~~~s~~g~~las~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~ 154 (380)
T 3iz6_a 83 SASQDGRLIVWNALTSQ-KTHAIKLH-----CPWVMECAFAPNGQSVACGGLD--SACSIFNLSSQADRDGNMPVSRVLT 154 (380)
T ss_dssp EEETTSEEEEEETTTTE-EEEEEECC-----CTTCCCCEECTTSSEEEECCSS--SCCEEEECCCCSSCCCSSTTCCBCC
T ss_pred EEeCCCeEEEEECCCCc-cceEEecC-----CCCEEEEEECCCCCEEEEeeCC--CcEEEEECCCCccccCCccceeecc
Confidence 33455677777763321 11222211 2447778999999999765432 34445544311100 00000101
Q ss_pred cccccccCCCcccceeecCCCC-eEEEEecCCCCCCCCccCCCCCCCCC-----CccCCCCCCcccccC-CcCcccCCcc
Q 004149 144 TVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPSKPTFSLGSTKGGSS-----DKDCNSWKGQGDWEE-DWGETYAGKR 216 (771)
Q Consensus 144 ~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-d~g~~~~~~~ 216 (771)
+..+ ......|+|++. .|+..+.+...+ .|+......... ...+........+.+ +....+++..
T Consensus 155 gh~~------~v~~~~~~~~~~~~l~s~s~D~~i~--~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~ 226 (380)
T 3iz6_a 155 GHKG------YASSCQYVPDQETRLITGSGDQTCV--LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226 (380)
T ss_dssp CCSS------CCCCCBCCSSSSSCEEEECTTSCEE--EECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred CCCc------ceEEEEEecCCCCEEEEECCCCcEE--EEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence 1111 225788999754 566666554332 343222111100 011122222333433 3333445566
Q ss_pred CceEEEEEccC-Cc-eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 217 QPSLFVININS-GE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 217 ~~~l~v~d~~~-~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
+..|.+||+.. ++ ...+ ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 227 D~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----l~s~s---------------~D~~i~lwd~------- 278 (380)
T 3iz6_a 227 DTTVRLWDLRITSRAVRTY--HGHEGDINSVKFFPDGQR----FGTGS---------------DDGTCRLFDM------- 278 (380)
T ss_dssp TSCEEEEETTTTCCCCEEE--CCCSSCCCEEEECTTSSE----EEEEC---------------SSSCEEEEET-------
T ss_pred CCeEEEEECCCCCcceEEE--CCcCCCeEEEEEecCCCe----EEEEc---------------CCCeEEEEEC-------
Confidence 78999999863 33 3444 344557889999999997 77665 3346888887
Q ss_pred hhhhhhcCCCCCCcce-ecCCC-------CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcc
Q 004149 295 SELELKESSSEDLPVV-NLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 366 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~-~lt~~-------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 366 (771)
.++... .+... ...+...+|||||+.|+..+.+ ..|++||+.+++.....
T Consensus 279 ----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----------g~i~vwd~~~~~~~~~~- 336 (380)
T 3iz6_a 279 ----------RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-----------GDCYVWDTLLAEMVLNL- 336 (380)
T ss_dssp ----------TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-----------SCEEEEETTTCCEEEEE-
T ss_pred ----------CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-----------CCEEEEECCCCceEEEE-
Confidence 444322 22211 1236789999999988766544 35889998765531100
Q ss_pred ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 367 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 367 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
... ...+...+..++|+|||+.| ++.+.++...||.+
T Consensus 337 ------~~~--------~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 337 ------GTL--------QNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAF 373 (380)
T ss_dssp ------CCS--------CSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEEC
T ss_pred ------ecc--------cCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEec
Confidence 000 00011245678899999855 66667777777744
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-08 Score=102.53 Aligned_cols=251 Identities=14% Similarity=0.036 Sum_probs=145.8
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...|+|+|+|+.|+++.... ..++.++..+. .+........ ..++.|+|||+.++.. .
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~---~~i~~~~~~~~-~~~~~~~~~~---------~~~l~~~~dg~l~v~~--~------- 87 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQ---NRTWAWSDDGQ-LSPEMHPSHH---------QNGHCLNKQGHLIACS--H------- 87 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGG---TEEEEEETTSC-EEEEESSCSS---------EEEEEECTTCCEEEEE--T-------
T ss_pred ccCCeEeCCCCEEEEEeCCC---CEEEEEECCCC-eEEEECCCCC---------cceeeECCCCcEEEEe--c-------
Confidence 56799999999887775433 35777773333 3333322211 1588999999844332 1
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEEecCCCCCccE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wspDg~~~~~~ 257 (771)
....|+++|..+|+.+.+..... ...+..++++|||+
T Consensus 88 -----------------------------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~----- 127 (296)
T 3e5z_A 88 -----------------------------------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS----- 127 (296)
T ss_dssp -----------------------------------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-----
T ss_pred -----------------------------------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-----
Confidence 12578999998888766621111 12456789999997
Q ss_pred EEEEeecCcce--eeeeee-eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004149 258 LVFVGWSSETR--KLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 258 l~~~~~~~~~~--~~g~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+++....+.. ..+... .......||.++. . ++.+.+.........++|||||+.| +.
T Consensus 128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----------------~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~ 188 (296)
T 3e5z_A 128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----------------D-GTLSAPIRDRVKPNGLAFLPSGNLL-VS 188 (296)
T ss_dssp EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----------------T-SCEEEEECCCSSEEEEEECTTSCEE-EE
T ss_pred EEEECCccccccccccccccccCCCcEEEEECC-----------------C-CCEEEeecCCCCCccEEECCCCCEE-EE
Confidence 66652100000 000000 0011347999986 4 5566665555556789999999988 65
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
.... ..|+++++...+. +... ..++ .. .. ..+..+++++||+ |+++. ...
T Consensus 189 ~~~~----------~~i~~~~~~~~g~--~~~~----~~~~-~~-~~-------~~p~~i~~d~~G~-l~v~~----~~~ 238 (296)
T 3e5z_A 189 DTGD----------NATHRYCLNARGE--TEYQ----GVHF-TV-EP-------GKTDGLRVDAGGL-IWASA----GDG 238 (296)
T ss_dssp ETTT----------TEEEEEEECSSSC--EEEE----EEEE-CC-SS-------SCCCSEEEBTTSC-EEEEE----TTE
T ss_pred eCCC----------CeEEEEEECCCCc--CcCC----CeEe-eC-CC-------CCCCeEEECCCCC-EEEEc----CCe
Confidence 5432 4689998863221 1000 0111 00 01 1235678999997 65554 245
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEE-eecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 415 IISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~-s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|++++.++..+..+..... .....| +++++.|+.+..+ .|++++..+.
T Consensus 239 v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-----~l~~~~~~~~ 287 (296)
T 3e5z_A 239 VHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-----EFWSIETNVR 287 (296)
T ss_dssp EEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-----EEEEEECSCC
T ss_pred EEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-----eEEEEEcccc
Confidence 8888987555556655444 555677 4788888877643 6888776543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-09 Score=115.58 Aligned_cols=236 Identities=8% Similarity=-0.028 Sum_probs=139.4
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
.+||+|+.+ +.... ...+.+++ ..++....+...... ..+.|||||++|+..+.+
T Consensus 144 ~~~p~~~~~--vs~~~--d~~V~v~D~~t~~~~~~i~~g~~~----------~~v~~spdg~~l~v~~~d---------- 199 (543)
T 1nir_A 144 DLDLPNLFS--VTLRD--AGQIALVDGDSKKIVKVIDTGYAV----------HISRMSASGRYLLVIGRD---------- 199 (543)
T ss_dssp CCCGGGEEE--EEEGG--GTEEEEEETTTCCEEEEEECSTTE----------EEEEECTTSCEEEEEETT----------
T ss_pred ccCCCCEEE--EEEcC--CCeEEEEECCCceEEEEEecCccc----------ceEEECCCCCEEEEECCC----------
Confidence 478988533 33332 22354444 445555544433333 388899999988775321
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc--cCCceeeccCCCCCCccceEEEec----CCCCCccE
Q 004149 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAP----LNEGLHQY 257 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~--~~~~~~~l~~~~~~~~~~~~~wsp----Dg~~~~~~ 257 (771)
..|.+||+ .++++... ++....+..++||| ||+.
T Consensus 200 ----------------------------------~~V~v~D~~~~t~~~~~~--i~~g~~p~~va~sp~~~~dg~~---- 239 (543)
T 1nir_A 200 ----------------------------------ARIDMIDLWAKEPTKVAE--IKIGIEARSVESSKFKGYEDRY---- 239 (543)
T ss_dssp ----------------------------------SEEEEEETTSSSCEEEEE--EECCSEEEEEEECCSTTCTTTE----
T ss_pred ----------------------------------CeEEEEECcCCCCcEEEE--EecCCCcceEEeCCCcCCCCCE----
Confidence 57999999 77765443 33444678899999 9996
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecCCC-----------Cccccceeec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-----------ISSAFFPRFS 325 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-----------~~~~~~p~~S 325 (771)
|+.... ....|.++|. .++++. .+... ...+....+|
T Consensus 240 l~v~~~--------------~~~~v~v~D~-----------------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 240 TIAGAY--------------WPPQFAIMDG-----------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp EEEEEE--------------ESSEEEEEET-----------------TTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred EEEEEc--------------cCCeEEEEec-----------------cccccceeecccCcccCccccccCCceEEEEEC
Confidence 655441 1236778886 555432 22211 1145678999
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
|||+.+++.... ...|+++|..+.+...++ .++ .+. .+..+.|+|||++++.
T Consensus 289 ~~~~~~~vs~~~----------~g~i~vvd~~~~~~l~~~-----~i~------~~~-------~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 289 HEHPEFIVNVKE----------TGKVLLVNYKDIDNLTVT-----SIG------AAP-------FLHDGGWDSSHRYFMT 340 (543)
T ss_dssp SSSSEEEEEETT----------TTEEEEEECTTSSSCEEE-----EEE------CCS-------SCCCEEECTTSCEEEE
T ss_pred CCCCEEEEEECC----------CCeEEEEEecCCCcceeE-----Eec------cCc-------CccCceECCCCCEEEE
Confidence 999987665543 257999998775432110 000 011 2356789999998876
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCCCC----CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 406 SSIWGSSQVIISVNVSSGELLRITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~~~----~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
+....+. |..+|..++++........ ......++++++.++++.+... ..|.+.+..+
T Consensus 341 a~~~~~~--v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d--~~V~v~d~~~ 402 (543)
T 1nir_A 341 AANNSNK--VAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD--GSISLIGTDP 402 (543)
T ss_dssp EEGGGTE--EEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS--SEEEEEECCT
T ss_pred EecCCCe--EEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC--ceEEEEEeCC
Confidence 6554444 5557999998776543211 1112234677777766554222 3466666544
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-11 Score=132.89 Aligned_cols=131 Identities=19% Similarity=0.210 Sum_probs=89.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-ch--HHHH-HH-HHCCcEEEEECCCCCC-CCC--hhhhh
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSLA-FL-SSVGYSLLIVNYRGSL-GFG--EEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~--~~~~-~l-a~~G~~V~~~d~rG~~-~~g--~~~~~ 586 (771)
+.|.+.+ .+|.|+.....++.|+||++|||++...... +. .++. .+ ...|++|+.+|||... ++. .+...
T Consensus 94 sedcl~l--~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~ 171 (534)
T 1llf_A 94 SEDCLTI--NVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA 171 (534)
T ss_dssp CSCCCEE--EEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCCCeEE--EEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccc
Confidence 3455444 5888975444567899999999987654432 21 1221 22 2468999999999632 111 11111
Q ss_pred cCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCc
Q 004149 587 SLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPL 650 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~ 650 (771)
.. .+...+.|+.++++|+.++ ...|++||.|+|+|+||.+++.++... +.+|+++|+.+|.
T Consensus 172 ~~---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 172 EG---SGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HT---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cC---CCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 11 2334589999999999885 236999999999999999888776653 4579999999984
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-09 Score=116.71 Aligned_cols=266 Identities=15% Similarity=0.079 Sum_probs=151.5
Q ss_pred eeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCccccccc
Q 004149 71 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVY 150 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 150 (771)
.+.+++|++.++ +..++... ......+...+|||||++||..+..+ .+.+|+-...+.+....... +
T Consensus 124 d~tV~lWd~~tg--~~~~~~~~--~~~~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~~h~-~--- 190 (420)
T 4gga_A 124 DNSVYLWSASSG--DILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSHS-A--- 190 (420)
T ss_dssp TTEEEEEETTTC--CEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCCS-S---
T ss_pred CCEEEEEECCCC--CEEEEEEe--cCCCCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEEeCCC-C---
Confidence 346777776432 33332211 11124588999999999998876543 45666322222222221111 1
Q ss_pred CCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc
Q 004149 151 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 229 (771)
Q Consensus 151 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~ 229 (771)
...++++|++.|+..+.+.... .|+.... ........+........+.++......+.....+.+|+..+++
T Consensus 191 -----~v~~~s~~~~~l~sgs~d~~i~--~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 191 -----RVGSLSWNSYILSSGSRSGHIH--HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp -----CEEEEEEETTEEEEEETTSEEE--EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred -----ceEEEeeCCCEEEEEeCCCcee--EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 1334556777777766544321 1111000 0001111122222344466665555566667899999998765
Q ss_pred eeec---cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC
Q 004149 230 VQAV---KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 306 (771)
Q Consensus 230 ~~~l---~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 306 (771)
.... ........+...+|+|++.. +++++.- ..+..|.++|+ .+
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~----~la~~~g------------s~D~~I~iwd~-----------------~t 310 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSN----VLATGGG------------TSDRHIRIWNV-----------------CS 310 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTT----EEEEEEC------------TTTCEEEEEET-----------------TT
T ss_pred ccceeeeeecccCCceeeeeeCCCccc----EEEEEee------------cCCCEEEEEeC-----------------Cc
Confidence 3211 00234446778899999998 8776421 12347888898 66
Q ss_pred CcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccc
Q 004149 307 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 307 ~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
+...........+.+..|+|+++.|+..+... ...|++||+.+++......+
T Consensus 311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~---------d~~I~iwd~~~~~~v~~l~g------------------- 362 (420)
T 4gga_A 311 GACLSAVDAHSQVCSILWSPHYKELISGHGFA---------QNQLVIWKYPTMAKVAELKG------------------- 362 (420)
T ss_dssp TEEEEEEECSSCEEEEEEETTTTEEEEEECTT---------TCCEEEEETTTCCEEEEECC-------------------
T ss_pred cccceeeccccceeeeeecCCCCeEEEEEecC---------CCEEEEEECCCCcEEEEEcC-------------------
Confidence 66544444555678899999999998876432 24699999887654211111
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 387 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 387 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
+...+..++|||||+.| ++...++...||.+
T Consensus 363 H~~~V~~l~~spdg~~l-~S~s~D~tvriWdv 393 (420)
T 4gga_A 363 HTSRVLSLTMSPDGATV-ASAAADETLRLWRC 393 (420)
T ss_dssp CSSCEEEEEECTTSSCE-EEEETTTEEEEECC
T ss_pred CCCCEEEEEEcCCCCEE-EEEecCCeEEEEEC
Confidence 11235577899999865 56667777777754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-09 Score=121.02 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=146.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC----cceEEEecCCcccccccCCCcccceeecC--CCCeEEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS----QLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~wSp--Dg~~la~~ 170 (771)
+.+...+|||||++||+..+ + ...+| ..+ +..+.+... .+. .+.+++||| ||+.|+..
T Consensus 19 ~~v~~~~~spdg~~l~~~~~---~---~v~v~~~~~~~~~~~~~~~~~~h---~~~-----~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCG---K---SAFVRCLDDGDSKVPPVVQFTGH---GSS-----VVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp TCCCCCEEETTTTEEEEEET---T---EEEEEECCSSCCSSCSEEEECTT---TTS-----CEEEEEECSSTTCCEEEEE
T ss_pred CceeEEEECCCCCEEEEecC---C---eEEEEECCCCCCccccceEEecC---CCc-----eEEEEEECcCCCCCEEEEe
Confidence 55788999999999999862 2 34444 333 333333211 111 026899999 99999886
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--------ce-eeccCCCCCCc
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--------EV-QAVKGIPKSLS 241 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--------~~-~~l~~~~~~~~ 241 (771)
+. ...|.+||+.++ +. ..+ ......
T Consensus 85 ~~--------------------------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~--~~~~~~ 118 (615)
T 1pgu_A 85 DE--------------------------------------------SGKVIVWGWTFDKESNSVEVNVKSEF--QVLAGP 118 (615)
T ss_dssp ET--------------------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEE--ECCSSC
T ss_pred cC--------------------------------------------CCEEEEEeCCCCcccccccccccchh--hccccc
Confidence 43 257899999655 22 222 234456
Q ss_pred cceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccc
Q 004149 242 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFF 321 (771)
Q Consensus 242 ~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~ 321 (771)
+..++|+|||+. |+..+...+ ....|+.+|. +.....+..+...+..
T Consensus 119 v~~~~~s~~~~~----l~~~~~~~~-----------~~~~v~~~d~------------------~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 119 ISDISWDFEGRR----LCVVGEGRD-----------NFGVFISWDS------------------GNSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEEECTTSSE----EEEEECCSS-----------CSEEEEETTT------------------CCEEEECCSCSSCEEE
T ss_pred EEEEEEeCCCCE----EEEeccCCC-----------CccEEEEEEC------------------CCcceeeecCCccEEE
Confidence 889999999998 887763211 1236777763 3445666677778899
Q ss_pred eeecCCCCE-EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccC-
Q 004149 322 PRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD- 399 (771)
Q Consensus 322 p~~SpDG~~-l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~d- 399 (771)
..|+|||+. |+..+.+ ..|.+||+.+++.... +....... ..+..++|+||
T Consensus 166 ~~~~~~~~~~l~~~~~d-----------~~v~vwd~~~~~~~~~----------~~~~~~~~------~~v~~~~~~~~~ 218 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDD-----------GSVVFYQGPPFKFSAS----------DRTHHKQG------SFVRDVEFSPDS 218 (615)
T ss_dssp EEECSSSSCEEEEEETT-----------TEEEEEETTTBEEEEE----------ECSSSCTT------CCEEEEEECSTT
T ss_pred EEECCCCCcEEEEEeCC-----------CcEEEEeCCCcceeee----------ecccCCCC------ceEEEEEECCCC
Confidence 999999984 5444433 3588888766443111 10000000 02446789999
Q ss_pred CCEEEEEeeeCCeeEEEEEECCCCcEEEec-----CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 400 GCTMLLSSIWGSSQVIISVNVSSGELLRIT-----PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 400 g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-----~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
++.|+ +...++. |..+|+.+++..... .....+....|+ +++.++....+ ..+.+.++.+
T Consensus 219 ~~~l~-~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~ 283 (615)
T 1pgu_A 219 GEFVI-TVGSDRK--ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTT 283 (615)
T ss_dssp CCEEE-EEETTCC--EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTT
T ss_pred CCEEE-EEeCCCe--EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCC
Confidence 88654 4444444 555688888766554 333445556777 88777666533 3466666543
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-11 Score=127.46 Aligned_cols=112 Identities=12% Similarity=0.020 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||.+... ...|.. .+..|++ .||.|+++|+||.+..... ... .......+|+.+.++++.++..
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~~---~~~-~~~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQYS---QAS-QNIRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCHH---HHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccch---hhH-hhHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999976553 235655 6677766 7999999999984332111 000 0011224678888888876544
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.+++.|+||||||.+|+.++.++|++++++++.+|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 567899999999999999999999999999999888764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-09 Score=110.81 Aligned_cols=238 Identities=11% Similarity=0.103 Sum_probs=140.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCC--CCeEEEEecCCCCCCe
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~~ 125 (771)
.++||+.|+... ..+.+.+|++........ .+.. ....+...+|+|+ |+.|+.....+
T Consensus 19 ~s~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~dg----- 79 (379)
T 3jrp_A 19 LDYYGKRLATCS---------SDKTIKIFEVEGETHKLIDTLTG-----HEGPVWRVDWAHPKFGTILASCSYDG----- 79 (379)
T ss_dssp ECSSSSEEEEEE---------TTSCEEEEEEETTEEEEEEEECC-----CSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred EcCCCCEEEEEE---------CCCcEEEEecCCCcceeeeEecC-----CCCcEEEEEeCCCCCCCEEEEeccCC-----
Confidence 467888877653 224566666643222221 2211 2256888999988 88888765533
Q ss_pred EEEEe--cCCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004149 126 QFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 126 ~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
.+.+| ..++...+..... ..+ .+.++.|+|+ |+.|+..+.
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~-~~~------~v~~~~~~~~~~~~~l~~~~~----------------------------- 123 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAV-HSA------SVNSVQWAPHEYGPLLLVASS----------------------------- 123 (379)
T ss_dssp CEEEEEEETTEEEEEEEECC-CSS------CEEEEEECCGGGCSEEEEEET-----------------------------
T ss_pred EEEEEEcCCCceeEeeeecC-CCc------ceEEEEeCCCCCCCEEEEecC-----------------------------
Confidence 34444 2333222222211 111 2368999999 888888643
Q ss_pred ccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCCccceEEEec-------------CCCCCccEEEEEeecC
Q 004149 202 GDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVFVGWSS 265 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wsp-------------Dg~~~~~~l~~~~~~~ 265 (771)
...|.+||+.++.. ..+ ......+..+.|+| |++. |+..+
T Consensus 124 ---------------d~~i~v~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~--- 179 (379)
T 3jrp_A 124 ---------------DGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG--- 179 (379)
T ss_dssp ---------------TSEEEEEECCTTSCCCEEEE--ECCTTCEEEEEECCCC----------CTTCE----EEEEE---
T ss_pred ---------------CCcEEEEecCCCCceeeEEe--cCCCCceEEEEEcCccccccccccCCCCCCE----EEEEe---
Confidence 25789999887632 223 23445678899999 5775 66554
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-----ceecCCCCccccceeecCC---CCEEEEEecC
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESISSAFFPRFSPD---GKFLVFLSAK 337 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~~~~~p~~SpD---G~~l~f~~~~ 337 (771)
.+..|+++|+ .++. ...+..+...+..+.|+|| |+.|+..+.+
T Consensus 180 ------------~dg~i~i~d~-----------------~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 180 ------------ADNLVKIWKY-----------------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp ------------TTSCEEEEEE-----------------ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ------------CCCeEEEEEe-----------------cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 2236777776 2222 2345556677889999999 7887776655
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||+.++..... ..+... .. +...+..++|+|||+.|+.. ..++...+|.
T Consensus 231 g-----------~i~iwd~~~~~~~~~-------~~~~~~---~~----~~~~v~~~~~s~~g~~l~~~-~~dg~i~iw~ 284 (379)
T 3jrp_A 231 R-----------TCIIWTQDNEQGPWK-------KTLLKE---EK----FPDVLWRASWSLSGNVLALS-GGDNKVTLWK 284 (379)
T ss_dssp S-----------CEEEEEESSTTSCCE-------EEESSS---SC----CSSCEEEEEECSSSCCEEEE-ESSSSEEEEE
T ss_pred C-----------EEEEEeCCCCCccce-------eeeecc---cc----CCCcEEEEEEcCCCCEEEEe-cCCCcEEEEe
Confidence 3 488888877542110 000000 00 01134567899999966544 4577788887
Q ss_pred EEC
Q 004149 418 VNV 420 (771)
Q Consensus 418 ~d~ 420 (771)
++.
T Consensus 285 ~~~ 287 (379)
T 3jrp_A 285 ENL 287 (379)
T ss_dssp EEE
T ss_pred CCC
Confidence 774
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-07 Score=101.35 Aligned_cols=259 Identities=13% Similarity=0.075 Sum_probs=142.6
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCC---CeEEEEec
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg---~~la~~~~ 172 (771)
..+...+|+| +++.++.....+ .+.+| ..++........... ..+.|+|++ ..|+...
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~- 163 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDK-----TLKVWDTNTLQTADVFNFEETV----------YSHHMSPVSTKHCLVAVGT- 163 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTS-----EEEEEETTTTEEEEEEECSSCE----------EEEEECSSCSSCCEEEEEE-
T ss_pred CcEEEEEEccCCCcEEEEEeCCC-----eEEEeeCCCCccceeccCCCce----------eeeEeecCCCCCcEEEEEc-
Confidence 5688999999 666776654433 45566 344444444433333 477788854 4666643
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|.+||+.+++..... ......+..+.|+|+++
T Consensus 164 -------------------------------------------~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 164 -------------------------------------------RGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYD 199 (408)
T ss_dssp -------------------------------------------SSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCT
T ss_pred -------------------------------------------CCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCC
Confidence 2357899999887654431 33455688999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. +++++. .+..|.++|+......-..+..............+..+...+....|+|||+.|+
T Consensus 200 ~----ll~~~~--------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 200 Y----ILATAS--------------ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp T----EEEEEE--------------TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred c----EEEEEc--------------CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 8 777663 2236777776210000000000000000000111134455688899999999998
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGS 411 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s-~dg~~l~~~~~~~~ 411 (771)
..+.+. .|.+||+.+++.......... .... ......+. ..+..+++. ..++
T Consensus 262 ~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~---------~~~~------~~~~~~~~~~~~~~~~~~-~~~~ 314 (408)
T 4a11_B 262 TVGTDN-----------RMRLWNSSNGENTLVNYGKVC---------NNSK------KGLKFTVSCGCSSEFVFV-PYGS 314 (408)
T ss_dssp EEETTS-----------CEEEEETTTCCBCCCCCCCCC---------CCCS------SCCCCEECCSSSSCEEEE-EETT
T ss_pred EecCCC-----------eEEEEECCCCccceecccccc---------cccc------ccceeEEecCCCceEEEE-ecCC
Confidence 777653 489999987765332211100 0000 00111222 223334444 3344
Q ss_pred eeEEEEEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 412 SQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
.+..+|+.+++...... ....+....|+++++.|+....+ ..|.+.++...
T Consensus 315 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 366 (408)
T 4a11_B 315 --TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD----CNILAWVPSLY 366 (408)
T ss_dssp --EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEEEECC-
T ss_pred --EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC----CeEEEEeCCCC
Confidence 46666888887665544 33455667899999887755432 24666666543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-08 Score=103.12 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=144.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...|+|+|||+.|+|+.... ..++.+..++....+....... .++.|+|||+.++.. .
T Consensus 47 ~egp~~~~~g~~l~~~d~~~---~~i~~~~~~g~~~~~~~~~~~~----------~gl~~d~dG~l~v~~--~------- 104 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVG---RRVLGWREDGTVDVLLDATAFT----------NGNAVDAQQRLVHCE--H------- 104 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTT---TEEEEEETTSCEEEEEESCSCE----------EEEEECTTSCEEEEE--T-------
T ss_pred ccCCeEeCCCCEEEEEECCC---CEEEEEeCCCCEEEEeCCCCcc----------ceeeECCCCCEEEEE--C-------
Confidence 45799999999998875433 3466666544443333322222 588999999844332 1
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEEecCCCCCccE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wspDg~~~~~~ 257 (771)
....|++++.+ |+.+.+..... ...+..++++|||+
T Consensus 105 -----------------------------------~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~----- 143 (305)
T 3dr2_A 105 -----------------------------------GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA----- 143 (305)
T ss_dssp -----------------------------------TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-----
T ss_pred -----------------------------------CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-----
Confidence 12467777776 55555421111 12356789999997
Q ss_pred EEEEeecCcc--eeeeeee-eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004149 258 LVFVGWSSET--RKLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 258 l~~~~~~~~~--~~~g~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+|+....+. ...+... .......||++|. ++++.+.+. .......++|||||+.|++.
T Consensus 144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~-----------------~~g~~~~~~-~~~~p~gl~~spdg~~lyv~ 205 (305)
T 3dr2_A 144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP-----------------DGSPLQRMA-DLDHPNGLAFSPDEQTLYVS 205 (305)
T ss_dssp EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS-----------------SSCCCEEEE-EESSEEEEEECTTSSEEEEE
T ss_pred EEEeCcCCCccccccccccccccCCCeEEEEcC-----------------CCCcEEEEe-cCCCCcceEEcCCCCEEEEE
Confidence 7775210000 0000000 0012347999997 677777665 44445678999999998877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
..... ......|+++++.+++ +.. ....... .. .....+++.++|+ |+++. . ..
T Consensus 206 ~~~~~-----~~~~~~i~~~~~~~~~---l~~-~~~~~~~-----~~-------~~pdgi~~d~~G~-lwv~~-~---~g 259 (305)
T 3dr2_A 206 QTPEQ-----GHGSVEITAFAWRDGA---LHD-RRHFASV-----PD-------GLPDGFCVDRGGW-LWSSS-G---TG 259 (305)
T ss_dssp ECCC--------CCCEEEEEEEETTE---EEE-EEEEECC-----SS-------SCCCSEEECTTSC-EEECC-S---SE
T ss_pred ecCCc-----CCCCCEEEEEEecCCC---ccC-CeEEEEC-----CC-------CCCCeEEECCCCC-EEEec-C---Cc
Confidence 65420 0112569999987644 111 1111110 00 1234677889998 65544 2 24
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 415 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
|++++.++..+..+.... ......|+++++.|+++.+. .||.++
T Consensus 260 v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-----~l~~~~ 303 (305)
T 3dr2_A 260 VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP-----CLWMLP 303 (305)
T ss_dssp EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETT-----EEEEEE
T ss_pred EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-----eEEEEE
Confidence 888998666566665444 34557788888888877653 566654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-07 Score=100.66 Aligned_cols=122 Identities=8% Similarity=-0.015 Sum_probs=72.5
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc--cCCCCCcccccCCCCCCcccc
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC--AEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~g~~~~~~~~~~~s~ 398 (771)
...++|||+.++|.+.. ..++++|+.++....+. ...+... ......| .....++++|
T Consensus 204 ~~~~~~~g~~~~~~~~~-----------~~v~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~p----~g~~~~a~~~ 263 (361)
T 2oiz_A 204 FIAPALDKDKAHFVSYY-----------GNVYSADFSGDEVKVDG-----PWSLLNDEDKAKNWVP----GGYNLVGLHR 263 (361)
T ss_dssp CSCCEECSSEEEEEBTT-----------SEEEEEECSSSSCEEEE-----EEESCCHHHHHTTCEE----CCSSCEEEET
T ss_pred EEEecccCCEEEEEeCC-----------CeEEEEEecCCCceecc-----cccccCcccccccccc----CCeeEEEEec
Confidence 34558999998887743 25899998765432110 0000000 0000001 1223467899
Q ss_pred CCCEEEEEeeeC--------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 399 DGCTMLLSSIWG--------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 399 dg~~l~~~~~~~--------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|++++|+..... ....++.||++++++..-..... .....+++||+.|+.+. . ..|.+++..++
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~----~~v~v~D~~t~ 335 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G----GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC-S----SCEEEEECSSS
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC-C----CeEEEEECCCC
Confidence 999888765411 23579999999988665433333 56679999999766433 2 66888876544
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=7e-09 Score=106.78 Aligned_cols=271 Identities=14% Similarity=0.101 Sum_probs=155.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+| |+|++|+.....+ .+.+| ..+........... .+..+.|+|||+.|+..+.+...
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTGQG---------FLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEECSS---------CEEEEEEETTTTEEEEEETTSCE
T ss_pred CCcEEEEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecCCc---------cEEEEEECCCCCEEEEecCCCeE
Confidence 45778899 9999988765543 45566 23333333332111 22689999999999988766542
Q ss_pred CCCCccCCCCCC---CCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec-CCC
Q 004149 177 SKPTFSLGSTKG---GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp-Dg~ 252 (771)
. .|....... ......+......+.| +....+++.....|.+|| .......+ ......+..+.|+| +++
T Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 84 N--GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNL--QAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp E--EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEE--ECCSSCEEEEEEEETTTT
T ss_pred E--EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEec--ccCCCceeEEEEccCCCC
Confidence 2 122111111 1111122222233344 333455666678999999 33333444 33455677889988 777
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l 331 (771)
. |+..+ ....|.++|. ......+.. ....+....|+|+|+ |
T Consensus 157 ~----l~~~~---------------~d~~i~i~d~------------------~~~~~~~~~~~~~~i~~~~~~~~~~-~ 198 (313)
T 3odt_A 157 K----FLTAS---------------ADKTIKLWQN------------------DKVIKTFSGIHNDVVRHLAVVDDGH-F 198 (313)
T ss_dssp E----EEEEE---------------TTSCEEEEET------------------TEEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred E----EEEEE---------------CCCCEEEEec------------------CceEEEEeccCcccEEEEEEcCCCe-E
Confidence 5 66554 2336777774 223333443 566788999999999 6
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+..+.+ ..|.+||+.+++..... .. ....+..++|+||++ | ++...++
T Consensus 199 ~~~~~d-----------g~i~i~d~~~~~~~~~~----------~~---------~~~~i~~~~~~~~~~-l-~~~~~dg 246 (313)
T 3odt_A 199 ISCSND-----------GLIKLVDMHTGDVLRTY----------EG---------HESFVYCIKLLPNGD-I-VSCGEDR 246 (313)
T ss_dssp EEEETT-----------SEEEEEETTTCCEEEEE----------EC---------CSSCEEEEEECTTSC-E-EEEETTS
T ss_pred EEccCC-----------CeEEEEECCchhhhhhh----------hc---------CCceEEEEEEecCCC-E-EEEecCC
Confidence 555543 35899998776532111 00 011345678999994 4 3444444
Q ss_pred eeEEEEEECCCCcEEEec-CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 412 SQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
. |..+|+.+++..... .....+....|+++++ ++. .+. -..+.+.++.++
T Consensus 247 ~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~---dg~i~iw~~~~~ 297 (313)
T 3odt_A 247 T--VRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV-GSS---DNLVRIFSQEKS 297 (313)
T ss_dssp E--EEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE-EET---TSCEEEEESCGG
T ss_pred E--EEEEECCCCceeEEEeccCceEEEEEEccCCC-EEE-EeC---CCcEEEEeCCCC
Confidence 4 555688788765443 3333456678888888 333 222 234677666544
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.05 E-value=9.5e-09 Score=105.40 Aligned_cols=242 Identities=11% Similarity=0.106 Sum_probs=138.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCccccccceEEEeCCC--CCeEEEEecCCCCCCeE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPIQ 126 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~~~ 126 (771)
++||++|+-.. ..+.+.++++.....+. ..+.. ..+.+...+|+|+ |+.||..+... .
T Consensus 18 s~~g~~las~s---------~D~~v~iw~~~~~~~~~~~~l~g-----H~~~V~~v~~s~~~~g~~l~s~s~D~-----~ 78 (297)
T 2pm7_B 18 DYYGKRMATCS---------SDKTIKIFEVEGETHKLIDTLTG-----HEGPVWRVDWAHPKFGTILASCSYDG-----K 78 (297)
T ss_dssp CTTSSEEEEEE---------TTSCEEEEEBCSSCBCCCEEECC-----CSSCEEEEEECCGGGCSEEEEEETTT-----E
T ss_pred CCCCCEEEEEe---------CCCEEEEEecCCCCcEEEEEEcc-----ccCCeEEEEecCCCcCCEEEEEcCCC-----E
Confidence 56888777543 33566676664332121 22221 2256888999874 88888776544 5
Q ss_pred EEEec--CCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004149 127 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
+.+|+ .+....+..... .. ..+.+++|+|| |+.|+..+.
T Consensus 79 v~iWd~~~~~~~~~~~~~~-h~------~~v~~v~~~p~~~g~~l~s~s~------------------------------ 121 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAV-HS------ASVNSVQWAPHEYGPMLLVASS------------------------------ 121 (297)
T ss_dssp EEEEEBSSSCBCCCEEECC-CS------SCEEEEEECCGGGCSEEEEEET------------------------------
T ss_pred EEEEEcCCCceEEEEEeec-CC------CceeEEEeCcCCCCcEEEEEEC------------------------------
Confidence 66662 222122211111 11 12368999998 888877543
Q ss_pred cccCCcCcccCCccCceEEEEEccCCc---eeeccCCCCCCccceEEEecCC-------------CCCccEEEEEeecCc
Q 004149 203 DWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLN-------------EGLHQYLVFVGWSSE 266 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~wspDg-------------~~~~~~l~~~~~~~~ 266 (771)
...|.+||+.++. ...+ ......+..+.|+|++ +. |+..+
T Consensus 122 --------------d~~v~~wd~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~----l~sgs---- 177 (297)
T 2pm7_B 122 --------------DGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG---- 177 (297)
T ss_dssp --------------TSEEEEEEBCSSSCBCCEEE--ECCSSCEEEEEECCCC------------CCE----EEEEE----
T ss_pred --------------CCcEEEEEecCCCceeeeee--ecccCccceEeecCCcccccccCCCCCCcce----EEEEc----
Confidence 2578889987653 2223 2334467788999984 33 44443
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-----ceecCCCCccccceeecCCC---CEEEEEecCC
Q 004149 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESISSAFFPRFSPDG---KFLVFLSAKS 338 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~~~~~p~~SpDG---~~l~f~~~~~ 338 (771)
.+..|.++|+ .++. ...+..+...+...+||||+ ++|+..+.+.
T Consensus 178 -----------~D~~v~lwd~-----------------~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 178 -----------ADNLVKIWKY-----------------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp -----------TTSCEEEEEE-----------------ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred -----------CCCcEEEEEE-----------------cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 2235666665 2222 23566677779999999996 6777666553
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|.+||+.++..... ..+.. ...++ ..+..++|+|||+.| ++...++...||..
T Consensus 230 -----------~v~iWd~~~~~~~~~-------~~~~~---~~~~~----~~v~~~~~s~~g~~l-as~~~D~~v~lw~~ 283 (297)
T 2pm7_B 230 -----------TCIIWTQDNEQGPWK-------KTLLK---EEKFP----DVLWRASWSLSGNVL-ALSGGDNKVTLWKE 283 (297)
T ss_dssp -----------CEEEEEESSTTSCCE-------EEESS---SSCCS----SCEEEEEECSSSCCE-EEEETTSCEEEEEE
T ss_pred -----------cEEEEEeCCCCCccc-------eeeee---cccCC----CcEEEEEECCCCCEE-EEEcCCCcEEEEEE
Confidence 477888765331100 00000 00111 134567899999866 45566778889887
Q ss_pred ECCCCcEE
Q 004149 419 NVSSGELL 426 (771)
Q Consensus 419 d~~tg~~~ 426 (771)
+.. |...
T Consensus 284 ~~~-g~w~ 290 (297)
T 2pm7_B 284 NLE-GKWE 290 (297)
T ss_dssp CTT-SCEE
T ss_pred CCC-CcEE
Confidence 653 4443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.6e-09 Score=106.81 Aligned_cols=233 Identities=9% Similarity=0.056 Sum_probs=131.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecC--CCCeEEEEecCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp--Dg~~la~~~~~~ 174 (771)
..+...+|||||++||..+... ...+|+ .+....+..+. +..+. +..++|+| +|+.|+..+.+
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l~-gH~~~------V~~v~~~~~~~~~~l~s~s~D- 80 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDR-----SVKIFDVRNGGQILIADLR-GHEGP------VWQVAWAHPMYGNILASCSYD- 80 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTT-----EEEEEEEETTEEEEEEEEE-CCSSC------EEEEEECCGGGSSCEEEEETT-
T ss_pred CeEEEeeEcCCCCEEEEEeCCC-----eEEEEEecCCCcEEEEEEc-CCCcc------EEEEEeCCCCCCCEEEEEECC-
Confidence 4578899999999998776543 455552 22222222221 11122 26899987 48888876533
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCCccceEEEecC-
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL- 250 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspD- 250 (771)
..|.+||+.+++. ..+ ......+..++|+||
T Consensus 81 -------------------------------------------~~v~iWd~~~~~~~~~~~~--~~h~~~V~~v~~~p~~ 115 (316)
T 3bg1_A 81 -------------------------------------------RKVIIWREENGTWEKSHEH--AGHDSSVNSVCWAPHD 115 (316)
T ss_dssp -------------------------------------------SCEEEECCSSSCCCEEEEE--CCCSSCCCEEEECCTT
T ss_pred -------------------------------------------CEEEEEECCCCcceEEEEc--cCCCCceEEEEECCCC
Confidence 5688899887642 223 234456889999998
Q ss_pred -CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-c---ceecCCCCccccceeec
Q 004149 251 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-P---VVNLTESISSAFFPRFS 325 (771)
Q Consensus 251 -g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~---~~~lt~~~~~~~~p~~S 325 (771)
|+. |+..+ .+..|.++|+ .++ . ...+..+...+....|+
T Consensus 116 ~g~~----lasgs---------------~D~~i~lwd~-----------------~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 116 YGLI----LACGS---------------SDGAISLLTY-----------------TGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp TCSC----EEEEC---------------SSSCEEEEEE-----------------CSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred CCcE----EEEEc---------------CCCCEEEEec-----------------CCCCCcceeeeeccccCCcceEEEc
Confidence 665 66554 2235677776 322 1 12233445567788999
Q ss_pred CCC-----------------CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004149 326 PDG-----------------KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 326 pDG-----------------~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
|++ +.|+..+.+ ..|.+||+.+++... .... +.+ +.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D-----------~~v~lWd~~~~~~~~-------~~~~--------l~~-h~ 212 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCD-----------NLIKLWKEEEDGQWK-------EEQK--------LEA-HS 212 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTT-----------SBCCEEEECTTSCEE-------EEEC--------CBC-CS
T ss_pred cccCCccccccccccCccccceEEEecCC-----------CeEEEEEeCCCCccc-------eeee--------ccc-CC
Confidence 983 444433322 357777775432100 0000 010 11
Q ss_pred CCCCCCccccCC---CEEEEEeeeCCeeEEEEEECCC-Cc--EEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 389 SSILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSS-GE--LLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 389 ~~~~~~~~s~dg---~~l~~~~~~~~~~~l~~~d~~t-g~--~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
..+..++|+|++ ..++++...++...||.++... ++ .+.+......+....|+|+++.|+....
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 134567899987 2356777777777777543211 11 1222222334556788999887765553
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-08 Score=110.70 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=108.3
Q ss_pred ceEEEEEccCCce--------eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 218 PSLFVININSGEV--------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 218 ~~l~v~d~~~~~~--------~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..|.+||+.++.. ..+ ......+..++|+|++.. +++++. ....|+++|+
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----~l~s~~--------------~dg~i~i~d~-- 261 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIF--TGHTAVVEDVAWHLLHES----LFGSVA--------------DDQKLMIWDT-- 261 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEE--CCCSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEET--
T ss_pred CeEEEEeCCCCCCCCceeccceee--cCCCCCEeeeEEeCCCCC----EEEEEe--------------CCCeEEEEEC--
Confidence 5788999877321 222 234456888999997766 666542 3347888998
Q ss_pred ccchhhhhhhhcCCCCCC----cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004149 290 YKSEASELELKESSSEDL----PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~----~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
..+ ....+..+...+....|+|+|+.++.....+ ..|.+||+.+......+
T Consensus 262 ---------------~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d----------g~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 262 ---------------RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD----------KTVALWDLRNLKLKLHS 316 (430)
T ss_dssp ---------------TCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SEEEEEETTCTTSCSEE
T ss_pred ---------------CCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC----------CeEEEEeCCCCCCCeEE
Confidence 332 3344445666788999999999765555432 35889998764321100
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC------------CcEEEecCC-C
Q 004149 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS------------GELLRITPA-E 432 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t------------g~~~~l~~~-~ 432 (771)
+.. ....+..++|+|+++.++++...++...||.++..+ .++...... .
T Consensus 317 ---------~~~---------h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 378 (430)
T 2xyi_A 317 ---------FES---------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 378 (430)
T ss_dssp ---------EEC---------CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS
T ss_pred ---------eec---------CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCC
Confidence 000 011345778999998888888777777777543311 133333322 2
Q ss_pred CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 433 SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 433 ~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
..+....|++++.+++++.+.- ..|.+.++
T Consensus 379 ~~v~~~~~~p~~~~~l~s~s~d---g~i~iw~~ 408 (430)
T 2xyi_A 379 AKISDFSWNPNEPWIICSVSED---NIMQVWQM 408 (430)
T ss_dssp SCEEEEEECSSSTTEEEEEETT---SEEEEEEE
T ss_pred CCceEEEECCCCCCEEEEEECC---CCEEEeEc
Confidence 3456678888888555555432 33555444
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-10 Score=123.64 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=92.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-chHHHHHHHHCC-cEEEEECCCC-CCCCChhhhhc--CC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVG-YSLLIVNYRG-SLGFGEEALQS--LP 589 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G-~~V~~~d~rG-~~~~g~~~~~~--~~ 589 (771)
+.|++.+ .+|.|+. ..++.|+||++|||++...... .......|+++| ++|+.+|||. .-|++...... ..
T Consensus 81 ~edcl~l--~v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~~~ 156 (498)
T 2ogt_A 81 SEDGLYL--NIWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEAY 156 (498)
T ss_dssp BSCCCEE--EEEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCGGG
T ss_pred CCCCcEE--EEEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhccccc
Confidence 4456555 4667862 4567899999999986543322 222345677666 9999999993 11233221100 01
Q ss_pred CCccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCccc
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~ 652 (771)
...+...+.|+.++++|+.++. ..|++||.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 157 ~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 157 AQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 1223345889999999998862 36899999999999999999888753 467999999998764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-08 Score=101.66 Aligned_cols=258 Identities=15% Similarity=0.110 Sum_probs=147.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++|+|||+ |+++... ...++.++ .+++.+.+... ...+ .++.|+|||+.++......
T Consensus 47 ~~~~~~~~~g~-l~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~----------~~i~~~~dg~l~v~~~~~~---- 108 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLLDVF---EGNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGRLFVCYLGDF---- 108 (333)
T ss_dssp EEEEEECTTSC-EEEEETT---TCEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSCEEEEECTTS----
T ss_pred ccCcEECCCCC-EEEEECC---CCEEEEEeCCCCcEEEEeeCCCCCc----------ceEEECCCCcEEEEeCCCC----
Confidence 46799999998 5444332 23577776 45555554422 2222 5899999997444321110
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.....|+++|.++++.+.+ ........+..+.++|||+
T Consensus 109 ------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~----- 147 (333)
T 2dg1_A 109 ------------------------------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG----- 147 (333)
T ss_dssp ------------------------------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-----
T ss_pred ------------------------------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-----
Confidence 0125799999998887643 1111223567889999986
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+++....... ......||+++. ++++.+.+.........+.|+|||+.|++....
T Consensus 148 l~v~~~~~~~--------~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 148 FYFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp EEEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEEeccccc--------cCCCceEEEEeC-----------------CCCEEEEeecCCCcccceEECCCCCEEEEEeCC
Confidence 6665522100 012347999987 566666554433346678999999988776543
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
...|+++|+.+.+............. +++. ..+..+++++||+ |+++.... ..|++
T Consensus 203 ----------~~~i~~~d~~~~g~~~~~~~~~~~~~---------~~~~--~~~~~i~~d~~G~-l~v~~~~~--~~v~~ 258 (333)
T 2dg1_A 203 ----------ANRLHRIALEDDGVTIQPFGATIPYY---------FTGH--EGPDSCCIDSDDN-LYVAMYGQ--GRVLV 258 (333)
T ss_dssp ----------GTEEEEEEECTTSSSEEEEEEEEEEE---------CCSS--SEEEEEEEBTTCC-EEEEEETT--TEEEE
T ss_pred ----------CCeEEEEEecCCCcCcccccceEEEe---------cCCC--CCCCceEECCCCC-EEEEEcCC--CEEEE
Confidence 24689999864321100000000000 0000 0123467889987 55554322 35777
Q ss_pred EECCCCcEEEecCCCC------CceeeEEeecCCEEEEEEeCCC--CCCeEEEEEec
Q 004149 418 VNVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPV--DVPQVKYGYFV 466 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~------~~~~~~~s~d~~~l~~~~s~~~--~p~~l~~~~~~ 466 (771)
++.++..+..+..... ......+++|++.|++...... ....||.++..
T Consensus 259 ~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 259 FNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred ECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 8886555555543321 2455678889888887776543 23456666543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-08 Score=100.24 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=142.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...|.|+|++..|+++... ...++.++..+...........+ .++.|+|||+ |+.. .
T Consensus 15 ~Egp~w~~~~~~l~~~d~~---~~~i~~~d~~~~~~~~~~~~~~~----------~~i~~~~dG~-l~v~-~-------- 71 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIP---AKKVCRWDSFTKQVQRVTMDAPV----------SSVALRQSGG-YVAT-I-------- 71 (297)
T ss_dssp EEEEEEETTTTEEEEEETT---TTEEEEEETTTCCEEEEECSSCE----------EEEEEBTTSS-EEEE-E--------
T ss_pred ccCCeEECCCCEEEEEECC---CCEEEEEECCCCcEEEEeCCCce----------EEEEECCCCC-EEEE-E--------
Confidence 3479999998888876442 34577777333333344433333 5889999999 3332 1
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEEecCCCCCccE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wspDg~~~~~~ 257 (771)
...|+++|.++++.+.+..... ...+..++++|||+
T Consensus 72 ------------------------------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~----- 110 (297)
T 3g4e_A 72 ------------------------------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR----- 110 (297)
T ss_dssp ------------------------------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-----
T ss_pred ------------------------------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-----
Confidence 1478999999888776631111 22456789999997
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|++.......... ........||.++. + ++...+.........++|||||+.|++....
T Consensus 111 l~~~~~~~~~~~~---~~~~~~~~l~~~d~-----------------~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 111 YFAGTMAEETAPA---VLERHQGALYSLFP-----------------D-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp EEEEEEECCSBTT---BCCTTCEEEEEECT-----------------T-SCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred EEEecCCcccccc---cccCCCcEEEEEEC-----------------C-CCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence 6666532211000 00012347899885 3 4444444333445678999999998877654
Q ss_pred CCCCCCCccccccceeeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 338 SSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
. ..|+++++. ++.. . ....+..+ ..... .+..+++.+||+ |+++.... ..|
T Consensus 170 ~----------~~i~~~~~d~~~G~~---~-~~~~~~~~---~~~~~-------~p~g~~~d~~G~-lwva~~~~--~~v 222 (297)
T 3g4e_A 170 S----------YSVDAFDYDLQTGQI---S-NRRSVYKL---EKEEQ-------IPDGMCIDAEGK-LWVACYNG--GRV 222 (297)
T ss_dssp G----------TEEEEEEECTTTCCE---E-EEEEEEEC---CGGGC-------EEEEEEEBTTSC-EEEEEETT--TEE
T ss_pred C----------CcEEEEeccCCCCcc---c-CcEEEEEC---CCCCC-------CCCeeEECCCCC-EEEEEcCC--CEE
Confidence 2 468888874 3331 0 00011110 00001 123567888985 66554333 358
Q ss_pred EEEECCCCcEEE-ecCCCCCceeeEEe-ecCCEEEEEEeCCC
Q 004149 416 ISVNVSSGELLR-ITPAESNFSWSLLT-LDGDNIIAVSSSPV 455 (771)
Q Consensus 416 ~~~d~~tg~~~~-l~~~~~~~~~~~~s-~d~~~l~~~~s~~~ 455 (771)
+++|.++|++.. +...........|+ +|++.|+++.....
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence 889998787654 43333345566787 78888888776543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.03 E-value=7e-09 Score=112.66 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=92.0
Q ss_pred ceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 218 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|++||+.++. ...+ ......+..++|+|+++. +++++. ....|.++|+..
T Consensus 254 g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~----~l~tg~--------------~dg~v~vwd~~~---- 309 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTV--DAHTAEVNCLSFNPYSEF----ILATGS--------------ADKTVALWDLRN---- 309 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEE--ECCSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEETTC----
T ss_pred CeEEEEECCCCCCCcceeEe--ecCCCCeEEEEeCCCCCC----EEEEEe--------------CCCeEEEEeCCC----
Confidence 689999998762 2233 234456889999999998 777662 234788888720
Q ss_pred hhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee----
Q 004149 294 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV---- 369 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~---- 369 (771)
.......+..+...+....|+|+|+.++.....+ ..|.+||+...+..+......
T Consensus 310 -----------~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~ 368 (430)
T 2xyi_A 310 -----------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGPP 368 (430)
T ss_dssp -----------TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SCCEEEEGGGTTCCCCHHHHHHCCT
T ss_pred -----------CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC----------CcEEEEeCCCCccccCccccccCCc
Confidence 1223455656677789999999998755555432 358888886633211100000
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
.+...... +...+..++|+|+++.++++...++...+|.++
T Consensus 369 ~~~~~~~~---------h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 369 ELLFIHGG---------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TEEEECCC---------CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred ceEEEcCC---------CCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 00100000 112355788999999777787778888888764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.02 E-value=9.9e-08 Score=103.11 Aligned_cols=246 Identities=15% Similarity=0.092 Sum_probs=151.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
-+.....||+++ .||...+. .+.+| ..++..++..+... .+ .+.+++|||||++||..+.
T Consensus 106 ~y~~~l~wS~~n-~lAvgld~------tV~lWd~~tg~~~~~~~~~~~-~~------~V~sv~fspdg~~lasgs~---- 167 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQMEQP-GE------YISSVAWIKEGNYLAVGTS---- 167 (420)
T ss_dssp TTCBCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECCST-TC------CEEEEEECTTSSEEEEEET----
T ss_pred ccceeEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEecCC-CC------cEEEEEECCCCCEEEEEEC----
Confidence 456779999865 67765432 35566 45565666554221 11 2369999999999988643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+..|.+||+.+++..... ......+. ++++|++.
T Consensus 168 ----------------------------------------Dg~v~iWd~~~~~~~~~~-~~h~~~v~--~~s~~~~~--- 201 (420)
T 4gga_A 168 ----------------------------------------SAEVQLWDVQQQKRLRNM-TSHSARVG--SLSWNSYI--- 201 (420)
T ss_dssp ----------------------------------------TSCEEEEETTTTEEEEEE-CCCSSCEE--EEEEETTE---
T ss_pred ----------------------------------------CCeEEEEEcCCCcEEEEE-eCCCCceE--EEeeCCCE---
Confidence 357899999988765541 22333344 44556664
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ....++.+|... .......+..+...+....|+|+|+.|+....
T Consensus 202 -l~sgs---------------~d~~i~~~d~~~---------------~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 202 -LSSGS---------------RSGHIHHHDVRV---------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp -EEEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred -EEEEe---------------CCCceeEeeecc---------------cceeeEEecccccceeeeeecCCCCeeeeeec
Confidence 55443 334677777621 12233455666677888999999999988776
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+. .+.+++..+++.......... . ....+...+|+|++..++++........|.
T Consensus 251 D~-----------~v~i~~~~~~~~~~~~~~~~~-----------~----~~~~V~~~~~~p~~~~~la~~~gs~D~~I~ 304 (420)
T 4gga_A 251 DN-----------LVNVWPSAPGEGGWVPLQTFT-----------Q----HQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304 (420)
T ss_dssp TS-----------CEEEEESSCCSSCSCCSEEEC-----------C----CSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred cc-----------cceEEeeccccccceeeeeec-----------c----cCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence 53 477888776654221110000 0 011234668999888787765533334566
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
.+|+.+++..........+....++++++.++......+ ..|++.+..+
T Consensus 305 iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d--~~I~iwd~~~ 353 (420)
T 4gga_A 305 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPT 353 (420)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTT--CCEEEEETTT
T ss_pred EEeCCccccceeeccccceeeeeecCCCCeEEEEEecCC--CEEEEEECCC
Confidence 668989887766555555666788999998887654333 2466666543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=4.4e-07 Score=94.70 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=72.6
Q ss_pred ceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc--cCCCCCcccccCCCCCCccc
Q 004149 321 FPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC--AEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 321 ~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~g~~~~~~~~~~~s 397 (771)
.+.|. +||+ ++|.+.. .+++++|+.++..+.+ ... .++.. ...+-.| .....++++
T Consensus 230 ~~~~~~~dG~-~~~vs~~-----------g~V~v~d~~~~~~~v~-~~~----~~~~~~~~~~g~~p----~g~q~~a~~ 288 (386)
T 3sjl_D 230 HPAYSQKAGR-LVWPTYT-----------GKIHQIDLSSGDAKFL-PAV----EALTEAERADGWRP----GGWQQVAYH 288 (386)
T ss_dssp CCEEETTTTE-EEEEBTT-----------SEEEEEECTTSSCEEC-CCE----ESSCHHHHHTTEEE----CSSSCEEEE
T ss_pred cceeEcCCCc-EEEEeCC-----------CEEEEEECCCCcceee-cce----eccccccccccccC----CCcceeeEC
Confidence 45674 7875 6777753 2599999876653211 100 00000 0000011 123456778
Q ss_pred cCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 398 SDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 398 ~dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+|+++||+....+ ...+++.+|++++++.+-..-........+++|++.++|+.+. ....+.++|..++
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~ 364 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESG 364 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTC
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCC
Confidence 9999998876532 2468999999999876543322223457899999855555442 2345788886654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-08 Score=110.35 Aligned_cols=158 Identities=7% Similarity=0.060 Sum_probs=98.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC---cceEEEecCC---cccccccCCCcccceeecCCC-CeEEEEe
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS---QLEKEFHVPQ---TVHGSVYADGWFEGISWNSDE-TLIAYVA 171 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~g~~~~~~~~~~~~wSpDg-~~la~~~ 171 (771)
..+...+|||||+.|+.. .. + .+.+|+-. ...+++.... ..| ...+.+++|+||| +.|+..+
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d--~---~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~s~~ 246 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DD--L---RINLWHLEITDRSFNIVDIKPANMEEL-----TEVITAAEFHPNSCNTFVYSS 246 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CS--S---EEEEEETTEEEEEEEEEECCCSSGGGC-----CCCEEEEEECSSCTTEEEEEE
T ss_pred cceEEEEEcCCCCEEEEe-CC--C---eEEEEECCCCCceeeeeeccccccccc-----CcceEEEEECCCCCcEEEEEe
Confidence 457889999999999865 32 2 45566322 2222222110 111 1234789999999 7777754
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-----eeccCCCCCC------
Q 004149 172 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-----QAVKGIPKSL------ 240 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-----~~l~~~~~~~------ 240 (771)
. ...|.+||+.+++. ..+. ....
T Consensus 247 ~--------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~ 280 (447)
T 3dw8_B 247 S--------------------------------------------KGTIRLCDMRASALCDRHSKLFE--EPEDPSNRSF 280 (447)
T ss_dssp T--------------------------------------------TSCEEEEETTTCSSSCTTCEEEC--CC-----CCH
T ss_pred C--------------------------------------------CCeEEEEECcCCccccceeeEec--cCCCcccccc
Confidence 3 25789999988774 4442 2221
Q ss_pred ------ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-Cc-ceec
Q 004149 241 ------SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LP-VVNL 312 (771)
Q Consensus 241 ------~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~-~~~l 312 (771)
.+..+.|+|||+. |+..+ . ..|.++|+ .. ++ ...+
T Consensus 281 ~~~~~~~v~~~~~s~~g~~----l~~~~---------------~-~~v~iwd~-----------------~~~~~~~~~~ 323 (447)
T 3dw8_B 281 FSEIISSISDVKFSHSGRY----MMTRD---------------Y-LSVKVWDL-----------------NMENRPVETY 323 (447)
T ss_dssp HHHHTTCEEEEEECTTSSE----EEEEE---------------S-SEEEEEET-----------------TCCSSCSCCE
T ss_pred ccccCceEEEEEECCCCCE----EEEee---------------C-CeEEEEeC-----------------CCCcccccee
Confidence 6788999999997 77554 2 37888887 32 32 2333
Q ss_pred CCCCcc---------------ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 313 TESISS---------------AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 313 t~~~~~---------------~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
..+... .....|||||++|+..+.+ ..|++||+.+++.
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d-----------g~v~iwd~~~~~~ 376 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN-----------NFFRMFDRNTKRD 376 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST-----------TEEEEEETTTCCE
T ss_pred eccccccccccccccccccccceEEEECCCCCEEEEeccC-----------CEEEEEEcCCCcc
Confidence 322211 1238999999998766544 3588999887764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-08 Score=105.20 Aligned_cols=263 Identities=15% Similarity=0.082 Sum_probs=148.5
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccc
Q 004149 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSV 149 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~ 149 (771)
+.+.+|++.++ +..++... ......+...+|||+|++||..+..+ .+.+|+ .++..+.......
T Consensus 45 ~tV~iWd~~tg--~~~~~~~~--~~~~~~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~~h~~----- 110 (318)
T 4ggc_A 45 NSVYLWSASSG--DILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSHSA----- 110 (318)
T ss_dssp TEEEEEETTTC--CEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSS-----
T ss_pred CEEEEEECCCC--CEEEEEEe--cCCCCeEEEEEECCCCCEEEEEECCC-----cEEEeecCCceeEEEecCccc-----
Confidence 45777776433 33222111 11124578899999999998766544 566773 3333222221111
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004149 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
....++++++.|+..+...... .+..... ........+........+.++....+++.....|.+||+.++
T Consensus 111 ------~~~~~~~~~~~l~s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 111 ------RVGSLSWNSYILSSGSRSGHIH--HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ------CEEEEEEETTEEEEEETTSEEE--EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred ------eEEEeecCCCEEEEEecCCceE--eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 2456778888777665443221 0110000 000011112222233445555445555666788999999876
Q ss_pred ceeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004149 229 EVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 229 ~~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
+..... .......+....|+|++.. +++.... .....|.++|. .
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~------------~~~~~i~lwd~-----------------~ 229 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSN----VLATGGG------------TSDRHIRIWNV-----------------C 229 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTT----EEEEEEC------------TTTCEEEEEET-----------------T
T ss_pred cccccceeeecccCCceEEEEecCCCCc----EEEEEec------------CCCCEEEEEec-----------------c
Confidence 532210 0223345678899999998 8765421 22336777786 4
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004149 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
.............+....|+|+++.++..+... ...|++||+.+++......+
T Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~---------d~~i~iwd~~~~~~~~~l~g------------------ 282 (318)
T 4ggc_A 230 SGACLSAVDAHSQVCSILWSPHYKELISGHGFA---------QNQLVIWKYPTMAKVAELKG------------------ 282 (318)
T ss_dssp TCCEEEEEECSSCEEEEEEETTTTEEEEEECTT---------TCCEEEEETTTCCEEEEECC------------------
T ss_pred cccccccccceeeeeeeeecccccceEEEEEcC---------CCEEEEEECCCCcEEEEEcC------------------
Confidence 454444444555677889999999998876432 24699999887654221111
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 386 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
+...+..++|+|||+.| ++.+.++...||.+
T Consensus 283 -H~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 283 -HTSRVLSLTMSPDGATV-ASAAADETLRLWRC 313 (318)
T ss_dssp -CSSCEEEEEECTTSSCE-EEEETTTEEEEECC
T ss_pred -CCCCEEEEEEcCCCCEE-EEEecCCeEEEEEC
Confidence 11235577899999855 56677777777743
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-07 Score=100.21 Aligned_cols=300 Identities=9% Similarity=0.028 Sum_probs=154.9
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecC------CCCC
Q 004149 51 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP------ENES 123 (771)
Q Consensus 51 ~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~------~~~~ 123 (771)
+|+.+ +|+.++.. .+.. ..+.++|. ...+.. ++... ..- .+++||||++|+..... ++..
T Consensus 82 ~~~~~-vyV~n~~~--~~~~-~~VsVID~--~t~~vv~~I~vG------~~P-gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 82 PDARR-VYIQDPAH--FAAI-TQQFVIDG--STGRILGMTDGG------FLP-HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CCTTE-EEEEECTT--TCSS-EEEEEEET--TTTEEEEEEEEC------SSC-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCE-EEEECCCc--CCCC-CeEEEEEC--CCCEEEEEEECC------CCC-ceEECCCCCEEEEEeccccccccCCCC
Confidence 57866 45555421 0001 56777664 322222 22222 123 78999999998654321 0112
Q ss_pred CeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004149 124 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 124 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
..+..++ ...+..+.+.+..... .-....-..+.+||||++|+.....
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r--~~~g~~P~~~~~spDGk~lyV~n~~----------------------------- 197 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPR--FLVGTYQWMNALTPDNKNLLFYQFS----------------------------- 197 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCC--CCBSCCGGGSEECTTSSEEEEEECS-----------------------------
T ss_pred CEEEEEECCCCcEEEEEECCCccc--cccCCCcceEEEcCCCCEEEEEecC-----------------------------
Confidence 3466666 4455555555431000 0000011488999999987665321
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCcee
Q 004149 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
....|.++|+.++++..- ++-... ....|+|+. .++... ....+
T Consensus 198 -------------~~~~VsVID~~t~kvv~~--I~v~g~---~~~~p~g~~----~~v~~~--------------~dG~~ 241 (426)
T 3c75_H 198 -------------PAPAVGVVDLEGKTFDRM--LDVPDC---YHIFPASPT----VFYMNC--------------RDGSL 241 (426)
T ss_dssp -------------SSCEEEEEETTTTEEEEE--EECCSE---EEEEEEETT----EEEEEE--------------TTSSE
T ss_pred -------------CCCeEEEEECCCCeEEEE--EEcCCc---eeeccCCCc----EEEEEc--------------CCCCE
Confidence 136799999999887543 221111 234455554 443321 11234
Q ss_pred EEEecccccchhhhhhhhcCCCCCCcce-----ecCCCC-ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 283 YAVRVSLYKSEASELELKESSSEDLPVV-----NLTESI-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~lt~~~-~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
..+++ .+++.. .+.... .....+.+++||+.++|.... ..++++|+
T Consensus 242 ~~V~~-----------------~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~-----------g~V~ViD~ 293 (426)
T 3c75_H 242 ARVDF-----------------ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT-----------GKIFQADL 293 (426)
T ss_dssp EEEEC-----------------CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT-----------SEEEEEEE
T ss_pred EEEEC-----------------CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC-----------CcEEEEec
Confidence 44444 222211 011111 112346789999999988743 25999998
Q ss_pred CCCCCCCCccceeeEEecccccCCCCC-cccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEe
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCF-PGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRI 428 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f-~g~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l 428 (771)
.++....+. .+........ .|........+.+++|+++||+..... ....+..||..++++..-
T Consensus 294 ~~~~~~v~~--------~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~ 365 (426)
T 3c75_H 294 TAEGATFRA--------PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK 365 (426)
T ss_dssp CSSCEEECC--------CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred cCCceEEee--------eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE
Confidence 665432110 0000000000 000001223467899999998876432 246799999999886643
Q ss_pred cCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 429 TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 429 ~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
..-........+++||+.++++.... -..|.++|..+.
T Consensus 366 I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~ 403 (426)
T 3c75_H 366 IELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATG 403 (426)
T ss_dssp EEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTC
T ss_pred EECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCC
Confidence 32222234568999999444444322 355888887554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.3e-09 Score=120.96 Aligned_cols=230 Identities=12% Similarity=0.132 Sum_probs=141.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~ 174 (771)
+.+...+|||||++|+.....+ .+.+| .++....+..+. +..+. +.+++|+|+ |+.|+..+.+
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l~-~h~~~------V~~l~~s~~~~~~~l~s~s~D- 76 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLT-GHEGP------VWRVDWAHPKFGTILASCSYD- 76 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTT-----EEEEEEEETTEEEEEEEEC-CCSSC------EEEEEECCTTSCSEEEEEETT-
T ss_pred ceeEEEEECCCCCeEEEEECCC-----cEEEEecCCCCCccceecc-CCcCc------eEEEEecCCCCCCEEEEEeCC-
Confidence 4588899999999998775543 45555 222222222221 11222 268999998 9888886432
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCCccceEEEecC-
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL- 250 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspD- 250 (771)
..|.+||+.+++. ..+ ......+..+.|+|+
T Consensus 77 -------------------------------------------g~I~vwd~~~~~~~~~~~~--~~h~~~V~~v~~sp~~ 111 (753)
T 3jro_A 77 -------------------------------------------GKVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHE 111 (753)
T ss_dssp -------------------------------------------SCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGG
T ss_pred -------------------------------------------CeEEEEECCCCcccccccc--cCCCCCeEEEEECCCC
Confidence 5789999998863 333 334557889999999
Q ss_pred -CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecC
Q 004149 251 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSP 326 (771)
Q Consensus 251 -g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~Sp 326 (771)
|+. ++..+ .+..|.++|+ .++ ....+..+...+....|+|
T Consensus 112 ~~~~----l~sgs---------------~dg~I~vwdl-----------------~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 112 YGPL----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp GCSE----EEEEE---------------TTSEEEEEEC-----------------CSSSCCCCEEEECCSSCEEEEEECC
T ss_pred CCCE----EEEEe---------------CCCcEEEEEe-----------------ecCCCcceeEeecCCCceEEEEecC
Confidence 776 66655 3347888887 333 2344555666788999999
Q ss_pred -------------CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 327 -------------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 327 -------------DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
||+.|+..+.+. .|.+||+.++.... .....+.. +...+..
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg-----------~I~iwd~~~~~~~~------~~~~~~~~---------h~~~V~~ 209 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLEG---------HSDWVRD 209 (753)
T ss_dssp CC---------CGGGCCEEEEETTS-----------CEEEEEEETTTTEE------EEEEEECC---------CSSCEEE
T ss_pred cccccccccccCCCCCEEEEEECCC-----------eEEEEeccCCcccc------eeeeeecC---------CCCcEEE
Confidence 688888777653 48888887654210 01111100 1113457
Q ss_pred CccccC---CCEEEEEeeeCCeeEEEEEECCCCcE---EEecC---CCCCceeeEEeecCCEEEEEE
Q 004149 394 NPWLSD---GCTMLLSSIWGSSQVIISVNVSSGEL---LRITP---AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 394 ~~~s~d---g~~l~~~~~~~~~~~l~~~d~~tg~~---~~l~~---~~~~~~~~~~s~d~~~l~~~~ 451 (771)
++|+|+ ++ ++++...++...+|.+ .+++. ..+.. ....+....|+++++.++...
T Consensus 210 l~~sp~~~~~~-~l~s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 210 VAWSPTVLLRS-YLASVSQDRTCIIWTQ--DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp EEECCCCSSSE-EEEEEESSSCEEEEEE--SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred EEeccCCCCCC-EEEEEecCCEEEEecC--CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence 789999 65 5566666777667654 44421 11111 222345568899988776554
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=126.01 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=90.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHH-CCcEEEEECCCC-CCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRG-SLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~-~G~~V~~~d~rG-~~~~g~~~~~~~~~~ 591 (771)
+.|.+.+ .+|.|+.. ..++.|+||++|||++....... ......|++ .|++|+.+|||. .-|++... ..+..
T Consensus 93 ~edcl~l--~v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~~~ 167 (543)
T 2ha2_A 93 SEDCLYL--NVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSREA 167 (543)
T ss_dssp ESCCCEE--EEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSSC
T ss_pred CCcCCeE--EEeecCCC-CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCC--CCCCC
Confidence 3455555 46678642 34568999999999865543321 122345554 799999999994 22222211 00112
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCcc
Q 004149 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 651 (771)
.+...+.|+.++++|+.++. ..|++||.|+|+|.||.+++.++... +.+|+++|+.+|..
T Consensus 168 ~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 168 PGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 23345899999999998862 36999999999999999998887643 46899999999853
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-08 Score=103.33 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=74.7
Q ss_pred ccceEEEeCCC---CCeEEEEecCCCCCCeEEEEe---cCCcce-EEEec-CCcccccccCCCcccceeecCCCCeEEEE
Q 004149 99 TGASAVVPSPS---GSKLLVVRNPENESPIQFELW---SQSQLE-KEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPd---G~~la~~~~~~~~~~~~~~~~---~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
+.+...+|||+ |+.|+.....+ .+.+| ..+... ..... ... +..++|+|||+.|+..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQMHTGP----------VLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTS-----EEEEEEECTTSCEEEEEEEECSSC----------EEEEEECTTSSEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCC-----cEEEEEcCCCCceeEEEeccccCC----------EEEEEECcCCCEEEEE
Confidence 56889999999 68887765443 34455 213222 22221 222 2689999999999876
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEE--e
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW--A 248 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~w--s 248 (771)
+. ...|.+||+.+++...+ ......+..+.| +
T Consensus 105 ~~--------------------------------------------dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~ 138 (368)
T 3mmy_A 105 SC--------------------------------------------DKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKA 138 (368)
T ss_dssp ET--------------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEEEEEEEC
T ss_pred cC--------------------------------------------CCcEEEEEcCCCCceee--ccccCceEEEEEEeC
Confidence 43 25899999999988777 455567888999 8
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
||++. |+..+ .+..|+++|+
T Consensus 139 ~~~~~----l~~~~---------------~dg~i~vwd~ 158 (368)
T 3mmy_A 139 PNYSC----VMTGS---------------WDKTLKFWDT 158 (368)
T ss_dssp SSCEE----EEEEE---------------TTSEEEEECS
T ss_pred CCCCE----EEEcc---------------CCCcEEEEEC
Confidence 88886 66554 2346888887
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-07 Score=103.60 Aligned_cols=366 Identities=8% Similarity=-0.048 Sum_probs=179.5
Q ss_pred chhhHHHHHHHHHHHHHhhcC-ccccc-----e--EEE--------ecCCCCcceEEEEEeechhhcccceeEEEEEEee
Q 004149 17 DATAEEEYASLSKLLQDFTNI-SSIDK-----A--WTF--------NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVIS 80 (771)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~--~~~--------~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (771)
..-+.+|++.+.+.++.+... |.+.. . .+. +..+.|....+|..... ...++++|..
T Consensus 113 ~~Lsd~ei~~l~~yi~~~~~~~~~~~~~~i~~s~kv~~~~~~~P~~~~~~~d~~~~~~V~~~~-------~~~V~viD~~ 185 (567)
T 1qks_A 113 GELSAEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRD-------AGQIALIDGS 185 (567)
T ss_dssp CCCCHHHHHHHHHHHHSCCCCCCCCCHHHHHHHCEESSCGGGSCSSCCSCCCGGGEEEEEETT-------TTEEEEEETT
T ss_pred CCCCHHHHHHHHHHHhhcccCCCccchhhhhccceeeccccccccccccccCCCceEEEEeCC-------CCeEEEEECC
Confidence 345677777777766655431 11110 0 111 12244656667765442 3577876653
Q ss_pred cCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCcceEEEecCCcccccccCCCccc
Q 004149 81 KENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFE 156 (771)
Q Consensus 81 ~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~ 156 (771)
..+.. ++... .....+++||||++++.. ..+ ..+..++. ..+....+...... .
T Consensus 186 --t~~v~~~i~~g------~~p~~v~~SpDGr~lyv~-~~d---g~V~viD~~~~t~~~v~~i~~G~~P----------~ 243 (567)
T 1qks_A 186 --TYEIKTVLDTG------YAVHISRLSASGRYLFVI-GRD---GKVNMIDLWMKEPTTVAEIKIGSEA----------R 243 (567)
T ss_dssp --TCCEEEEEECS------SCEEEEEECTTSCEEEEE-ETT---SEEEEEETTSSSCCEEEEEECCSEE----------E
T ss_pred --CCeEEEEEeCC------CCccceEECCCCCEEEEE-cCC---CeEEEEECCCCCCcEeEEEecCCCC----------c
Confidence 22222 22222 234578999999988654 332 24666663 33333333332222 4
Q ss_pred ceeec----CCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC----------CCCC-CcccccCCcCcccC-CccCceE
Q 004149 157 GISWN----SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC----------NSWK-GQGDWEEDWGETYA-GKRQPSL 220 (771)
Q Consensus 157 ~~~wS----pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~d~g~~~~-~~~~~~l 220 (771)
.+.|| |||++|+...+.... ...++....+........ .... ..+..+++..+.++ .+....|
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~-v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQ-YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTE-EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred eeEEccccCCCCCEEEEEEccCCe-EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 88999 799988776544211 111111111000000000 0000 01122222111111 1123566
Q ss_pred EEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhh
Q 004149 221 FVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 221 ~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
+++|....+...+..++.........|+|||++ ++...+ ....|.++|+
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~----~~va~~--------------~sn~V~ViD~------------- 371 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY----FITAAN--------------ARNKLVVIDT------------- 371 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCE----EEEEEG--------------GGTEEEEEET-------------
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCE----EEEEeC--------------CCCeEEEEEC-------------
Confidence 666655433222211122223446789999996 555542 2237899998
Q ss_pred cCCCCCCcceecCCC----Ccccccee-ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 301 ESSSEDLPVVNLTES----ISSAFFPR-FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 301 ~~~~~~~~~~~lt~~----~~~~~~p~-~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
.+++....... ....+.+. ++||+..++++.+-. ...|.++|.++++..... ..++..+
T Consensus 372 ----~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g---------~~~Vsvid~~~~~~~~~~---~kvv~~i 435 (567)
T 1qks_A 372 ----KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG---------DDSVALIGTDPEGHPDNA---WKILDSF 435 (567)
T ss_dssp ----TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS---------SSEEEEEECCTTTCTTTB---TSEEEEE
T ss_pred ----CCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC---------CCeEEEecCCCCCCcccc---CEEEEEE
Confidence 66654332221 11113344 488888776555432 245888888764422110 1122222
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-C---eeEEEEEECCCC-----c--EEEecC--------CCCCce
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-S---SQVIISVNVSSG-----E--LLRITP--------AESNFS 436 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~-~---~~~l~~~d~~tg-----~--~~~l~~--------~~~~~~ 436 (771)
..... ....+..+||++.|++..... . ...+..+|+++. . .+.+.. ......
T Consensus 436 ~~~g~---------g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (567)
T 1qks_A 436 PALGG---------GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV 506 (567)
T ss_dssp ECSCS---------CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred ecCCC---------CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence 22111 112345699999888765321 1 346777787665 1 133321 122345
Q ss_pred eeEEeecCCEEEEEE-eCCCCCCeEEEEEeccc
Q 004149 437 WSLLTLDGDNIIAVS-SSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 437 ~~~~s~d~~~l~~~~-s~~~~p~~l~~~~~~~~ 468 (771)
...|+++|++++++. +.......|.++|..+.
T Consensus 507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 507 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp EEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred eeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 578999999999886 33446677888875543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-09 Score=117.05 Aligned_cols=304 Identities=10% Similarity=-0.032 Sum_probs=149.7
Q ss_pred hcccceeEEEEEEeecCCCCcc---ceeecCCccccccceEEEeCCC------CCeEEEEecCCCCCCeEEEEecCCcc-
Q 004149 66 LANKRKKFMLSTVISKENENSV---TFQWAPFPVEMTGASAVVPSPS------GSKLLVVRNPENESPIQFELWSQSQL- 135 (771)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~---~lt~~~~~~~~~~~~~~~~SPd------G~~la~~~~~~~~~~~~~~~~~~~~~- 135 (771)
+.....+.+.+|++........ .+... .+.+...+|||+ |+.||..+.. +.-.+|.+..+...
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~-----~~~V~~v~wsp~~~~~~~~~~LAs~s~D--gtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHS-----FGEVWDLKWHEGCHAPHLVGCLSFVSQE--GTINFLEIIDNATDV 249 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEEC-----CCSEEEEEECSSCCCSSSSCEEEEEETT--SCEEEEECCCCSSSS
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEec-----CCcEEEEEECCCCCCCCCCceEEEEecC--CeEEEEEcCCCcccc
Confidence 3445566777777754321111 12211 145788999997 5677766653 33333333222111
Q ss_pred eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC-CCCccCCCCCCcc--cccCCc-Ccc
Q 004149 136 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG-SSDKDCNSWKGQG--DWEEDW-GET 211 (771)
Q Consensus 136 ~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~d~-g~~ 211 (771)
............-......+.+++|+|++ .|+..+.+...+ .|+....... .....+......+ .|.++. ...
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~--lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~l 326 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA--EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVV 326 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE--EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE--EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEE
Confidence 00000000000000001234789999975 687777665433 3433221111 1122334444444 466664 334
Q ss_pred cCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004149 212 YAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
+++..+..|.+||+.+++... +.+......+..++||||++. ++..+ ....|.++|+
T Consensus 327 aS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~----l~s~~---------------~d~tv~lwd~--- 384 (524)
T 2j04_B 327 STVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS----YIYSD---------------GASSLRAVPS--- 384 (524)
T ss_dssp EEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE----EEEEC---------------SSSEEEEEET---
T ss_pred EEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe----EEEeC---------------CCCcEEEEEC---
Confidence 566678899999998765422 211111123567899999987 76654 2235778887
Q ss_pred cchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004149 291 KSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
..+. ...+..+...+.+.+|||||+.|+..+.+. .|.+||+..+-........
T Consensus 385 --------------~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg-----------tv~lwd~~~~~~~~~~~~~- 438 (524)
T 2j04_B 385 --------------RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG-----------SLIITNAARRLLHGIKNSS- 438 (524)
T ss_dssp --------------TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT-----------EEECCBSCSSTTTCC-----
T ss_pred --------------cccccceeeecCCCceEEEEeCCCCCeEEEEECCC-----------EEEEEechHhhccccccCc-
Confidence 4444 356777777899999999999988766553 4777776542111000000
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCC
Q 004149 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 445 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~ 445 (771)
... .. ..+..++|+|||+.+-+ .+ ...++.++..+..+..+......+....|+|++.
T Consensus 439 ~~~--------~~------~~v~~v~~sp~g~~~~~---~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~ 496 (524)
T 2j04_B 439 ATQ--------KS------LRLWKWDYSIKDDKYRI---DS-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA 496 (524)
T ss_dssp --C--------CC------CEEEECBCCSSSCEEEE---CC-CCCCCC-------------CCCSCCCEEECCSTT
T ss_pred cce--------ee------eEEEEeccCCCCCeEEc---cC-CceecccccCCcceeeecCCCceEEEEECCCCCC
Confidence 000 00 01235688999984422 11 1223333322333445555555566679999864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.2e-08 Score=99.42 Aligned_cols=236 Identities=14% Similarity=0.087 Sum_probs=136.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
...|+|+|+++.++++... ..+++.++ .++.. +.+..+..+ .++.|+|||+.++..
T Consensus 51 ~egp~~~~~~~~l~~~d~~---~~~i~~~d~~~~~~-~~~~~~~~v----------~~i~~~~dg~l~v~~--------- 107 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNIL---ERELHELHLASGRK-TVHALPFMG----------SALAKISDSKQLIAS--------- 107 (326)
T ss_dssp EEEEEEETTTTEEEEEEGG---GTEEEEEETTTTEE-EEEECSSCE----------EEEEEEETTEEEEEE---------
T ss_pred CcCCeEeCCCCEEEEEECC---CCEEEEEECCCCcE-EEEECCCcc----------eEEEEeCCCeEEEEE---------
Confidence 3579999999888887543 24678777 44433 333333333 588999999865542
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEEecCCCCCcc
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wspDg~~~~~ 256 (771)
...|+++|.++++.+.+..... ...+..+.++|||+
T Consensus 108 -------------------------------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---- 146 (326)
T 2ghs_A 108 -------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA---- 146 (326)
T ss_dssp -------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC----
T ss_pred -------------------------------------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC----
Confidence 1248999999888776631211 12456789999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+++....... ......||+++ + ++.+.+.........+.|||||+.|++...
T Consensus 147 -l~v~~~~~~~--------~~~~~~l~~~~-~------------------g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 147 -LWIGTMGRKA--------ETGAGSIYHVA-K------------------GKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp -EEEEEEETTC--------CTTCEEEEEEE-T------------------TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -EEEEeCCCcC--------CCCceEEEEEe-C------------------CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 6665421110 01234688887 2 233333332233557899999999988764
Q ss_pred CCCCCCCCccccccceeeecC--CC-CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 337 KSSVDSGAHSATDSLHRIDWP--TN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
.. ..|+++++. ++ .... ...+..+ ..... .+..+++.+||. |+++.... .
T Consensus 199 ~~----------~~I~~~d~~~~~Gl~~~~----~~~~~~~---~~~~~-------~p~gi~~d~~G~-lwva~~~~--~ 251 (326)
T 2ghs_A 199 KV----------NRLMRVPLDARTGLPTGK----AEVFIDS---TGIKG-------GMDGSVCDAEGH-IWNARWGE--G 251 (326)
T ss_dssp TT----------CEEEEEEBCTTTCCBSSC----CEEEEEC---TTSSS-------EEEEEEECTTSC-EEEEEETT--T
T ss_pred CC----------CEEEEEEcccccCCcccC----ceEEEEC---CCCCC-------CCCeeEECCCCC-EEEEEeCC--C
Confidence 32 469999975 44 2211 0001110 00001 123456788886 55544322 3
Q ss_pred EEEEEECCCCcEEEecCCCCCceeeEEe-ecCCEEEEEEeCCC
Q 004149 414 VIISVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSPV 455 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s-~d~~~l~~~~s~~~ 455 (771)
.|++++.++..+..+...........|+ ++++.|+++.....
T Consensus 252 ~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 252 AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 6888898544445555443334556777 77787777665443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.96 E-value=9.6e-08 Score=99.53 Aligned_cols=201 Identities=12% Similarity=0.084 Sum_probs=118.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCcccccccCCCcccceeecC--CCCeEEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp--Dg~~la~~~~~ 173 (771)
..+...+|||||++||.....+ .+.+| .+....++...-....+ .+.+++|+| |++.|+..+.+
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWRAHDS------SIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEECCSS------CEEEEEECCGGGCSEEEEEETT
T ss_pred cceeEEEEcCCCCEEEEeeCCC-----eEEEEECCCCCCcceecceeccCCC------cEEEEEEcCCCCCCEEEEEcCC
Confidence 4588999999999998775433 34444 22222122211111111 226899999 69988876432
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc----------eeeccCCCCCCccc
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----------VQAVKGIPKSLSVG 243 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~----------~~~l~~~~~~~~~~ 243 (771)
..|.+||+.+++ ...+ ......+.
T Consensus 81 --------------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 114 (351)
T 3f3f_A 81 --------------------------------------------KTVKLWEEDPDQEECSGRRWNKLCTL--NDSKGSLY 114 (351)
T ss_dssp --------------------------------------------SCEEEEEECTTSCTTSSCSEEEEEEE--CCCSSCEE
T ss_pred --------------------------------------------CeEEEEecCCCcccccccCcceeeee--cccCCcee
Confidence 578889988763 2333 34455688
Q ss_pred eEEEecC--CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eec--------
Q 004149 244 QVVWAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL-------- 312 (771)
Q Consensus 244 ~~~wspD--g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l-------- 312 (771)
.+.|+|+ ++. |+..+ .+..|.++|+ ..++. ..+
T Consensus 115 ~~~~~~~~~~~~----l~~~~---------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 115 SVKFAPAHLGLK----LACLG---------------NDGILRLYDA-----------------LEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp EEEECCGGGCSE----EEEEE---------------TTCEEEEEEC-----------------SSTTCTTCCEEEEEEES
T ss_pred EEEEcCCCCCcE----EEEec---------------CCCcEEEecC-----------------CChHHhccccccccccc
Confidence 8999999 886 66655 3346888887 22221 111
Q ss_pred -----CCCCccccceeecCC---CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCc
Q 004149 313 -----TESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 384 (771)
Q Consensus 313 -----t~~~~~~~~p~~SpD---G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 384 (771)
......+....|+|+ ++.|+..+.+. .+..++...+....+ ..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~--------~~~~~------- 212 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----------AIIYQRGKDGKLHVA--------AKLPG------- 212 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----------EEEEEECTTSCEEEE--------EECCC-------
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCC-----------cEEEEccCCCceeee--------eecCC-------
Confidence 123445778999998 88877766542 233333333321110 00000
Q ss_pred ccccCCCCCCccccCCC---EEEEEeeeCCeeEEEEEEC
Q 004149 385 GLYSSSILSNPWLSDGC---TMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 385 g~~~~~~~~~~~s~dg~---~l~~~~~~~~~~~l~~~d~ 420 (771)
+...+..++|+|++. .++++...++...+|.++.
T Consensus 213 --h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 213 --HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp --CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred --CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 011345678999983 4667777778888887653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-08 Score=116.49 Aligned_cols=213 Identities=9% Similarity=0.076 Sum_probs=126.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+|||||+.||.....+ .+.+|+......+..... .+ .+..++||| |++|+..+.
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg-----~I~lw~~~~~~~~~~~~~--~~------~V~~l~fsp-g~~L~S~s~------ 77 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTG-----EVHIYGQQQVEVVIKLED--RS------AIKEMRFVK-GIYLVVINA------ 77 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTS-----EEEEECSTTCEEEEECSS--CC------CEEEEEEET-TTEEEEEET------
T ss_pred CCcEEEEECCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEcCC--CC------CEEEEEEcC-CCEEEEEEC------
Confidence 4578899999999999876544 566774332222222221 11 237999999 887777543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
+..|.+||+.+++.... ......+..++|+|||+. |
T Consensus 78 --------------------------------------D~~v~lWd~~~~~~~~~--~~~~~~V~~v~~sp~g~~----l 113 (902)
T 2oaj_A 78 --------------------------------------KDTVYVLSLYSQKVLTT--VFVPGKITSIDTDASLDW----M 113 (902)
T ss_dssp --------------------------------------TCEEEEEETTTCSEEEE--EECSSCEEEEECCTTCSE----E
T ss_pred --------------------------------------cCeEEEEECCCCcEEEE--EcCCCCEEEEEECCCCCE----E
Confidence 36899999998875443 223346788999999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc------------eecCCCCccccceeecC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV------------VNLTESISSAFFPRFSP 326 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~------------~~lt~~~~~~~~p~~Sp 326 (771)
+..+ .+..|.++|+ .++.. ..+..+...+.+.+|+|
T Consensus 114 ~sgs---------------~dg~V~lwd~-----------------~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 114 LIGL---------------QNGSMIVYDI-----------------DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEEE---------------TTSCEEEEET-----------------TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEEc---------------CCCcEEEEEC-----------------CCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 6654 2346888887 44432 12234556788999999
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCC-----CcccccCCCCCCccccCCC
Q 004149 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC-----FPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----f~g~~~~~~~~~~~s~dg~ 401 (771)
++..++.....+ ..+ +||+.+++........ ........ ........+..++|+|||+
T Consensus 162 ~~~~~l~~g~~d----------g~v-lWd~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 162 RDIGTVLISYEY----------VTL-TYSLVENEIKQSFIYE------LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp TEEEEEEEECSS----------CEE-EEETTTTEEEEEECCC------BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred CCCCEEEEEeCC----------CcE-EEECCCCceEEEEecc------cCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 754333344332 347 8898776532110000 00000000 0000112355788999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 402 TMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.| ++...++...|| |+.+++...
T Consensus 225 ~l-asgs~Dg~i~lW--d~~~g~~~~ 247 (902)
T 2oaj_A 225 HI-ITIHEDNSLVFW--DANSGHMIM 247 (902)
T ss_dssp EE-EEEETTCCEEEE--ETTTCCEEE
T ss_pred EE-EEEECCCeEEEE--ECCCCcEEE
Confidence 55 555556655555 787887654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-08 Score=102.81 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=136.3
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCccccccceEEEeCC--CCCeEEEEecCCCCCCeE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSP--SGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SP--dG~~la~~~~~~~~~~~~ 126 (771)
++||++|+-.. ..+.+.+|++....... ..+.. ..+.+...+|+| +|+.||..+... .
T Consensus 22 s~~g~~lasgs---------~D~~v~lwd~~~~~~~~~~~l~g-----H~~~V~~v~~~~~~~~~~l~s~s~D~-----~ 82 (316)
T 3bg1_A 22 DYYGTRLATCS---------SDRSVKIFDVRNGGQILIADLRG-----HEGPVWQVAWAHPMYGNILASCSYDR-----K 82 (316)
T ss_dssp CGGGCEEEEEE---------TTTEEEEEEEETTEEEEEEEEEC-----CSSCEEEEEECCGGGSSCEEEEETTS-----C
T ss_pred cCCCCEEEEEe---------CCCeEEEEEecCCCcEEEEEEcC-----CCccEEEEEeCCCCCCCEEEEEECCC-----E
Confidence 45777666432 33566777664331111 12221 225688899987 488888766543 4
Q ss_pred EEEec--CCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004149 127 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
..+|+ .+....+..+. +..+ .+.+++|+|| |+.|+..+.
T Consensus 83 v~iWd~~~~~~~~~~~~~-~h~~------~V~~v~~~p~~~g~~lasgs~------------------------------ 125 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHA-GHDS------SVNSVCWAPHDYGLILACGSS------------------------------ 125 (316)
T ss_dssp EEEECCSSSCCCEEEEEC-CCSS------CCCEEEECCTTTCSCEEEECS------------------------------
T ss_pred EEEEECCCCcceEEEEcc-CCCC------ceEEEEECCCCCCcEEEEEcC------------------------------
Confidence 56663 23222222221 1111 2268999998 777777543
Q ss_pred cccCCcCcccCCccCceEEEEEccCCce-eecc-CCCCCCccceEEEecCC-----------------CCCccEEEEEee
Q 004149 203 DWEEDWGETYAGKRQPSLFVININSGEV-QAVK-GIPKSLSVGQVVWAPLN-----------------EGLHQYLVFVGW 263 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~-~~~~~~~~~~~~wspDg-----------------~~~~~~l~~~~~ 263 (771)
+..|.+||+.++.. .... .......+..+.|+|++ +. |+..+
T Consensus 126 --------------D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~sgs- 186 (316)
T 3bg1_A 126 --------------DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR----FASGG- 186 (316)
T ss_dssp --------------SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB----EECCB-
T ss_pred --------------CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccce----EEEec-
Confidence 25788888876532 1110 02233456788999984 33 33322
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecCCC----CEEEEEec
Q 004149 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDG----KFLVFLSA 336 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~SpDG----~~l~f~~~ 336 (771)
.+..|.++|+. ..+ ....+..+...+...+|||++ +.|+..+.
T Consensus 187 --------------~D~~v~lWd~~----------------~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 187 --------------CDNLIKLWKEE----------------EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp --------------TTSBCCEEEEC----------------TTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred --------------CCCeEEEEEeC----------------CCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 23356666651 122 234556666778999999997 67776665
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+. .|.+|++.+......... +.. . +...+..++|+|||+.| ++...++...||
T Consensus 237 D~-----------~v~iw~~~~~~~~~~~~~---~~~--------~----~~~~v~~v~~sp~g~~l-as~~~D~~v~lw 289 (316)
T 3bg1_A 237 DG-----------RVFIWTCDDASSNTWSPK---LLH--------K----FNDVVWHVSWSITANIL-AVSGGDNKVTLW 289 (316)
T ss_dssp TC-----------EEEEEECSSTTCCCCBCC---EEE--------E----CSSCEEEEEECTTTCCE-EEEESSSCEEEE
T ss_pred CC-----------eEEEEEccCccccchhhh---hhh--------c----CCCcEEEEEEcCCCCEE-EEEcCCCeEEEE
Confidence 53 478888765321000000 000 0 11134577899999865 555667788888
Q ss_pred EEECCCCcEEEe
Q 004149 417 SVNVSSGELLRI 428 (771)
Q Consensus 417 ~~d~~tg~~~~l 428 (771)
..+.. |+..++
T Consensus 290 ~~~~~-g~~~~~ 300 (316)
T 3bg1_A 290 KESVD-GQWVCI 300 (316)
T ss_dssp EECTT-SCEEEE
T ss_pred EECCC-CcEEEe
Confidence 77653 554444
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.8e-08 Score=103.75 Aligned_cols=230 Identities=9% Similarity=0.045 Sum_probs=121.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+...+|||||+.||...+.. +.+|+......+... ..+. ....|+++++.++.++.... .
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~------~~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~-~ 82 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS------FEIYNVHPVAHIMSQEMRHL----------SKVRMLHRTNYVAFVTGVKE-V 82 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE------EEEEEETTEEEEEEEECSCC----------CEEEECTTSSEEEEECSSTT-E
T ss_pred CceEEEEECCCCCEEEEEcCCE------EEEEecCCcceeeeeecCCe----------EEEEEcCCCCEEEEEECCcc-E
Confidence 4588899999999998654321 346632222222211 1122 57889999998877654321 1
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC-ceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
...|+........... .........+.++. +.......|++||+.++ +.... ... .....+++| +.
T Consensus 83 v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~~~~~i~i~d~~~~~~~~~~--~~~--~~~~~~~s~--~~--- 149 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRIK-VDAPVKDLFLSREF---IVVSYGDVISVFKFGNPWKRITD--DIR--FGGVCEFSN--GL--- 149 (355)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECSSE---EEEEETTEEEEEESSTTCCBSSC--CEE--EEEEEEEET--TE---
T ss_pred EEEEECCCCcEEEEEE-CCCceEEEEEcCCE---EEEEEcCEEEEEECCCCceeeEE--ecc--CCceEEEEc--cE---
Confidence 1223321111100000 11111122233321 11123456777777765 22111 111 233445666 43
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-----------------ceecCCCCccc
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----------------VVNLTESISSA 319 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----------------~~~lt~~~~~~ 319 (771)
+++.+ ......|.++|+ .++. ...+..+...+
T Consensus 150 -la~~s-------------g~~~g~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 150 -LVYSN-------------EFNLGQIHITKL-----------------QSSGSATTQDQGVQQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp -EEEEE-------------SSCTTCEEEEEC-----------------CC------------------CCEEECCCSSCE
T ss_pred -EEEeC-------------CCcCcEEEEEEC-----------------CCCCccccccccccccccCcccEEEEccCCce
Confidence 66652 113346888887 3322 45667777889
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCcccccc-ceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
...+|||||+.|+..+.+ .. |.+||+.+++.... +.. |.+...+..++|+|
T Consensus 199 ~~~~~s~~g~~l~s~s~d-----------~~~v~iwd~~~~~~~~~----------~~~-------g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQD-----------GTIIRVFKTEDGVLVRE----------FRR-------GLDRADVVDMKWST 250 (355)
T ss_dssp EEEEECTTSSEEEEEETT-----------CSEEEEEETTTCCEEEE----------EEC-------TTCCSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEE----------EEc-------CCCCCcEEEEEECC
Confidence 999999999998877755 34 88899887654211 100 00112355788999
Q ss_pred CCCEEEEEeeeCCeeEEEEE
Q 004149 399 DGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~ 418 (771)
||+.| ++...++...||.+
T Consensus 251 ~~~~l-~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 251 DGSKL-AVVSDKWTLHVFEI 269 (355)
T ss_dssp TSCEE-EEEETTCEEEEEES
T ss_pred CCCEE-EEEECCCEEEEEEc
Confidence 99865 45555666666644
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=107.74 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=83.2
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
+...++.|.. .+.+..+.||++||...+. ...|. .+...|+++||.|+.+|++|. |... .....++
T Consensus 50 L~~~i~~p~~-~~~~~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG~---G~~~--------~~~~~~~ 116 (316)
T 3icv_A 50 LDAGLTCQGA-SPSSVSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPPF---MLND--------TQVNTEY 116 (316)
T ss_dssp HHHTEEETTB-BTTBCSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTTT---TCSC--------HHHHHHH
T ss_pred HhhhEeCCCC-CCCCCCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCCC---CCCc--------HHHHHHH
Confidence 4444666633 2334556799999965532 13465 678899999999999999983 3211 1123567
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC---CCceeEEEecCCccc
Q 004149 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 652 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~ 652 (771)
+.+.++.+.+.. ..+++.|+||||||.++.+++..+ +++++.+|+++|...
T Consensus 117 la~~I~~l~~~~--g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 117 MVNAITTLYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 778888887763 347899999999999998777765 589999999988754
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-09 Score=104.76 Aligned_cols=198 Identities=13% Similarity=0.040 Sum_probs=106.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.+.|+++||.+.. ...|...+..|.+ |.|+.+|++| ++. ..+++.+.++.+. ..+
T Consensus 17 ~~~l~~~hg~~~~--~~~~~~~~~~l~~--~~v~~~d~~g---~~~-------------~~~~~~~~i~~~~-----~~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGY--GLMYQNLSSRLPS--YKLCAFDFIE---EED-------------RLDRYADLIQKLQ-----PEG 71 (230)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHCTT--EEEEEECCCC---STT-------------HHHHHHHHHHHHC-----CSS
T ss_pred CCCEEEECCCCCc--hHHHHHHHHhcCC--CeEEEecCCC---HHH-------------HHHHHHHHHHHhC-----CCC
Confidence 4789999997654 3467777777754 9999999997 321 1345555555441 135
Q ss_pred eEEEEEcChhHHHHHHHHHhC---CCceeEEEecCCccchh--hhhcCCCCCcch-hhhhccCCCCCcCCCCCChhhHH-
Q 004149 617 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLA--LMVGTTDIPDWC-YVESYGSKGKDSFTESPSVEDLT- 689 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 689 (771)
++.++|||+||.+++.++.+. ++.++++++.++..... .+.......... +... .......+.. .......
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 149 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNV-NRDNEALNSE-AVKHGLKQ 149 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHH-TTTCSGGGSH-HHHHHHHH
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhc-ChhhhhhhhH-HHHHHHHH
Confidence 799999999999999998765 35688888877653211 000000000000 0000 0000000000 0000000
Q ss_pred ---HHhhcCc-cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc--cCCCCCChHHHHHHHH
Q 004149 690 ---RFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH--GIERPQSDFESFLNIG 763 (771)
Q Consensus 690 ---~~~~~sp-~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H--~~~~~~~~~~~~~~i~ 763 (771)
.+..... .....++++|+++++|++|..++. ....+.+ ....+++++.+++ +| .+. .+....+...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~-~~~~w~~---~~~~~~~~~~i~g-~H~~~~~-~~~~~~~~~~i~ 223 (230)
T 1jmk_C 150 KTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPE-WLASWEE---ATTGAYRMKRGFG-THAEMLQ-GETLDRNAGILL 223 (230)
T ss_dssp HHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCT-TEECSGG---GBSSCEEEEECSS-CGGGTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccEEEEEeCCCCCCcc-ccchHHH---hcCCCeEEEEecC-ChHHHcC-cHhHHHHHHHHH
Confidence 0000000 023467889999999999998862 2111111 1123588999997 89 443 233334455555
Q ss_pred HHHH
Q 004149 764 LWFK 767 (771)
Q Consensus 764 ~wl~ 767 (771)
+||.
T Consensus 224 ~~l~ 227 (230)
T 1jmk_C 224 EFLN 227 (230)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5554
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-10 Score=126.97 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=88.5
Q ss_pred cCCCceEEEEEEec-----CCCCCCCC----CcEEEEEcCCCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCC-CCChh
Q 004149 515 KGAQKPFEAIFVSS-----SHKKDCSC----DPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSL-GFGEE 583 (771)
Q Consensus 515 ~~~g~~l~~~~~~P-----~~~~~~~~----~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~V~~~d~rG~~-~~g~~ 583 (771)
+.|.+.+ .+|.| ... ..++ .|+||++|||++....... ......|+++|++|+.+|||... |+...
T Consensus 87 ~edcL~l--nv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~ 163 (551)
T 2fj0_A 87 SEACIHA--NIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSL 163 (551)
T ss_dssp CSCCCEE--EEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCC
T ss_pred CCCCeEE--EEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccC
Confidence 3455444 57778 422 2233 8999999998865433321 12345677899999999999521 12111
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCcc
Q 004149 584 ALQSLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 584 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 651 (771)
.. ....+...+.|+.++++|+.++. ..|++||.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 164 ~~---~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 164 NS---TSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp SS---SSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred cc---cCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 00 11123345899999999998862 3689999999999999999988765 356899999998853
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-07 Score=98.71 Aligned_cols=295 Identities=10% Similarity=0.067 Sum_probs=162.4
Q ss_pred eechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEE
Q 004149 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKE 138 (771)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~ 138 (771)
+..-+......+.+.+|++.... ....+. ...+.+...+|+|++ .++..+..+ .+.+| ..++....
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~-~~~~~~-----~h~~~V~~l~~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~ 198 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKK-FLLQLS-----GHDGGVWALKYAHGG-ILVSGSTDR-----TVRVWDIKKGCCTHV 198 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTE-EEEEEC-----CCSSCEEEEEECSTT-EEEEEETTS-----CEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCc-EEEEEe-----CCCcCEEEEEEcCCC-EEEEEeCCC-----CEEEEECCCCcEEEE
Confidence 33344444556678887763321 112222 123568899999999 565554432 35556 23333333
Q ss_pred EecCCcccccccCCCcccceeec--CCCCeEEEEecCCCCCCCCccCCCCCCCCCCcc---------------------C
Q 004149 139 FHVPQTVHGSVYADGWFEGISWN--SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD---------------------C 195 (771)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~wS--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 195 (771)
... ..+ .+.++.|+ ||++.|+..+.+.... .|+............ .
T Consensus 199 ~~~---h~~------~v~~l~~~~~~~~~~l~s~s~d~~i~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 199 FEG---HNS------TVRCLDIVEYKNIKYIVTGSRDNTLH--VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ECC---CSS------CEEEEEEEESSSCEEEEEEETTSCEE--EEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECC---CCC------ccEEEEEecCCCCCEEEEEcCCCcEE--EeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 221 111 12577777 6888888877655332 222111111000000 0
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeee
Q 004149 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 275 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~ 275 (771)
........+.++....+++..+..|.+||+.+++..... ......+..+.|+|||+. |+..+
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----l~sg~------------- 329 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS------------- 329 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE-------------
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCE----EEEEe-------------
Confidence 000001112334344555666789999999988765542 334456888999999997 77655
Q ss_pred ccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004149 276 YNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 276 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
.+..|.++|+ .+++ ...+..+...+....|+ ++.|+..+.+ ..|.+|
T Consensus 330 --~dg~i~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d-----------g~v~vw 377 (464)
T 3v7d_B 330 --MDTTIRIWDL-----------------ENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD-----------GSIRGW 377 (464)
T ss_dssp --TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEEC--SSEEEEEETT-----------SEEEEE
T ss_pred --CCCcEEEEEC-----------------CCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC-----------CcEEEE
Confidence 3347888898 4444 45566666677788887 5777766654 258899
Q ss_pred ecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCC
Q 004149 355 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAES 433 (771)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~ 433 (771)
|+.++....... ........+|++|++.|+.. . ++ .+..+|+.+|+.... .....
T Consensus 378 d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~-~-dg--~i~iwd~~~g~~~~~~~~~~~ 433 (464)
T 3v7d_B 378 DANDYSRKFSYH--------------------HTNLSAITTFYVSDNILVSG-S-EN--QFNIYNLRSGKLVHANILKDA 433 (464)
T ss_dssp ETTTCCEEEEEE--------------------CTTCCCEEEEEECSSEEEEE-E-TT--EEEEEETTTCCEEESCTTTTC
T ss_pred ECCCCceeeeec--------------------CCCCccEEEEEeCCCEEEEe-c-CC--eEEEEECCCCcEEehhhccCC
Confidence 987644211000 00123456799999866543 3 44 466668889987763 22222
Q ss_pred CceeeEEeecCCEEEEEEeC
Q 004149 434 NFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 434 ~~~~~~~s~d~~~l~~~~s~ 453 (771)
.....++.+++.++++.+.
T Consensus 434 -~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 434 -DQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp -SEEEEEEEETTEEEEEEEE
T ss_pred -CcEEEEEecCCEEEEEEEe
Confidence 2233444467777766654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-08 Score=105.54 Aligned_cols=266 Identities=8% Similarity=-0.020 Sum_probs=143.8
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+......+.+.+|++... .....+... ...+...+|+|+|+.|+..... +.-.+|.++.......+.... .
T Consensus 32 l~s~~~dg~v~vw~~~~~-~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d--g~i~~~~~~~~~~~~~~~~~~-~ 102 (313)
T 3odt_A 32 VASVSRDGTVRLWSKDDQ-WLGTVVYTG-----QGFLNSVCYDSEKELLLFGGKD--TMINGVPLFATSGEDPLYTLI-G 102 (313)
T ss_dssp EEEEETTSEEEEEEESSS-EEEEEEEEC-----SSCEEEEEEETTTTEEEEEETT--SCEEEEETTCCTTSCC-CEEC-C
T ss_pred EEEEEcCCcEEEEECCCC-EEEEEeecC-----CccEEEEEECCCCCEEEEecCC--CeEEEEEeeecCCCCcccchh-h
Confidence 333345567778777332 112222222 2568889999999999877653 233344444222111111111 1
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEEEE
Q 004149 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVI 223 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~ 223 (771)
..+ .+..+.| +++.|+..+.+.... .|+ ..........+........|.+ +....+++.....|.+|
T Consensus 103 ~~~------~i~~~~~--~~~~l~~~~~d~~i~--~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 103 HQG------NVCSLSF--QDGVVISGSWDKTAK--VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp CSS------CEEEEEE--ETTEEEEEETTSEEE--EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccc------CEEEEEe--cCCEEEEEeCCCCEE--EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 111 1246667 677777766554321 222 0000011111222222334444 44455556667889999
Q ss_pred EccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCC
Q 004149 224 NINSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 303 (771)
Q Consensus 224 d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 303 (771)
|.. .....+. ......+..+.|+|+++ ++..+ ....|+++|+
T Consensus 171 d~~-~~~~~~~-~~~~~~i~~~~~~~~~~-----~~~~~---------------~dg~i~i~d~---------------- 212 (313)
T 3odt_A 171 QND-KVIKTFS-GIHNDVVRHLAVVDDGH-----FISCS---------------NDGLIKLVDM---------------- 212 (313)
T ss_dssp ETT-EEEEEEC-SSCSSCEEEEEEEETTE-----EEEEE---------------TTSEEEEEET----------------
T ss_pred ecC-ceEEEEe-ccCcccEEEEEEcCCCe-----EEEcc---------------CCCeEEEEEC----------------
Confidence 932 2233331 22555788999999986 55444 3347889998
Q ss_pred CCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCC
Q 004149 304 SEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 382 (771)
Q Consensus 304 ~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (771)
.+++ ...+..+...+....|+||| +|+..+.+ ..|++||+.+++..... ...
T Consensus 213 -~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----------g~v~iwd~~~~~~~~~~----------~~~---- 265 (313)
T 3odt_A 213 -HTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED-----------RTVRIWSKENGSLKQVI----------TLP---- 265 (313)
T ss_dssp -TTCCEEEEEECCSSCEEEEEECTTS-CEEEEETT-----------SEEEEECTTTCCEEEEE----------ECS----
T ss_pred -CchhhhhhhhcCCceEEEEEEecCC-CEEEEecC-----------CEEEEEECCCCceeEEE----------ecc----
Confidence 4444 45555667778999999999 46655543 35899998876532211 100
Q ss_pred CcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 004149 383 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 425 (771)
Q Consensus 383 f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 425 (771)
...+..++|+||++ ++ +...++...+| ++.+++.
T Consensus 266 -----~~~i~~~~~~~~~~-~~-~~~~dg~i~iw--~~~~~~~ 299 (313)
T 3odt_A 266 -----AISIWSVDCMSNGD-II-VGSSDNLVRIF--SQEKSRW 299 (313)
T ss_dssp -----SSCEEEEEECTTSC-EE-EEETTSCEEEE--ESCGGGC
T ss_pred -----CceEEEEEEccCCC-EE-EEeCCCcEEEE--eCCCCce
Confidence 01245678999998 43 34455555555 6656543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-08 Score=102.27 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=110.8
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC--CCCeEEEEecCCCCCCeEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP--SGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP--dG~~la~~~~~~~~~~~~~ 127 (771)
++||+.|+... ..+.+.+|++.........+. .+......+...+|+| ||+.|+.....+ .-.+|
T Consensus 20 ~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg--~v~vw 86 (351)
T 3f3f_A 20 DFYGRHVATCS---------SDQHIKVFKLDKDTSNWELSD--SWRAHDSSIVAIDWASPEYGRIIASASYDK--TVKLW 86 (351)
T ss_dssp CSSSSEEEEEE---------TTSEEEEEEECSSSCCEEEEE--EEECCSSCEEEEEECCGGGCSEEEEEETTS--CEEEE
T ss_pred cCCCCEEEEee---------CCCeEEEEECCCCCCcceecc--eeccCCCcEEEEEEcCCCCCCEEEEEcCCC--eEEEE
Confidence 56777766542 335677777754432211111 0111225688999999 699988776543 23333
Q ss_pred EEecCCcc------eEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004149 128 ELWSQSQL------EKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 128 ~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
.+..+... ..+.... ...+ .+..+.|+|+ ++.|+..+.+
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~-~~~~------~v~~~~~~~~~~~~~l~~~~~d-------------------------- 133 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLN-DSKG------SLYSVKFAPAHLGLKLACLGND-------------------------- 133 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEEC-CCSS------CEEEEEECCGGGCSEEEEEETT--------------------------
T ss_pred ecCCCcccccccCcceeeeec-ccCC------ceeEEEEcCCCCCcEEEEecCC--------------------------
Confidence 33322110 2222221 1111 2368999999 9988886432
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeec----------c--CCCCCCccceEEEecC---CCCCccEEEEEeec
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAV----------K--GIPKSLSVGQVVWAPL---NEGLHQYLVFVGWS 264 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l----------~--~~~~~~~~~~~~wspD---g~~~~~~l~~~~~~ 264 (771)
..|.+||+.+++.... . .......+..+.|+|+ ++. |+..+.
T Consensus 134 ------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----l~~~~~- 190 (351)
T 3f3f_A 134 ------------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK----LAVSAL- 190 (351)
T ss_dssp ------------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE----EEEEET-
T ss_pred ------------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE----EEEecC-
Confidence 5788888776653211 0 0123346778899998 664 555541
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCC----CEEEEEecC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDG----KFLVFLSAK 337 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG----~~l~f~~~~ 337 (771)
...+...+. ..+. ...+..+...+....|+|+| +.|+..+.+
T Consensus 191 --------------~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 191 --------------EQAIIYQRG-----------------KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp --------------TEEEEEEEC-----------------TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred --------------CCcEEEEcc-----------------CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 123333332 3333 34455566678899999999 666665544
Q ss_pred CCCCCCCccccccceeeecCCC
Q 004149 338 SSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..|.+||+.++
T Consensus 240 -----------g~i~iwd~~~~ 250 (351)
T 3f3f_A 240 -----------GRIRIFKITEK 250 (351)
T ss_dssp -----------SCEEEEEEEEC
T ss_pred -----------CeEEEEeCCCC
Confidence 24777887654
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-10 Score=124.61 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=86.6
Q ss_pred cCCCceEEEEEEecCCCC-CCCCCcEEEEEcCCCCCCCCCc-------chHHHHHHH-HCCcEEEEECCCCC-CCCChhh
Q 004149 515 KGAQKPFEAIFVSSSHKK-DCSCDPLIVVLHGGPHSVSLSS-------YSKSLAFLS-SVGYSLLIVNYRGS-LGFGEEA 584 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~-~~~~~p~vv~~HGg~~~~~~~~-------~~~~~~~la-~~G~~V~~~d~rG~-~~~g~~~ 584 (771)
+.|.+.+ .+|.|.... ..++.|+||++|||++...... +......|+ +.|++|+.+|||.. .++....
T Consensus 77 sedcl~l--nv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~ 154 (579)
T 2bce_A 77 NEDCLYL--NIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTG 154 (579)
T ss_dssp CSCCCEE--EEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CCCCCEE--EEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCC
Confidence 4455555 477786432 3467899999999886543221 111123444 45799999999942 1221111
Q ss_pred hhcCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCc
Q 004149 585 LQSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 650 (771)
Q Consensus 585 ~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~ 650 (771)
....+++ ..+.|+.++++|+.++ ...|++||.|+|+|.||.++..++.. ...+|+++|+.++.
T Consensus 155 ~~~~pgn---~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 155 DSNLPGN---YGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp STTCCCC---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CCCCCCc---cchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 0111222 2478999999999875 23699999999999999999988764 34689999988874
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.7e-09 Score=105.98 Aligned_cols=192 Identities=7% Similarity=-0.011 Sum_probs=109.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..+.||++||.+.. ...|...+..|. .+|.|+.+|++|. +. .++++.+.++.+ . ..
T Consensus 21 ~~~~l~~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~g~---~~-------------~~~~~~~~i~~~---~--~~ 76 (244)
T 2cb9_A 21 GGKNLFCFPPISGF--GIYFKDLALQLN-HKAAVYGFHFIEE---DS-------------RIEQYVSRITEI---Q--PE 76 (244)
T ss_dssp CSSEEEEECCTTCC--GGGGHHHHHHTT-TTSEEEEECCCCS---TT-------------HHHHHHHHHHHH---C--SS
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHHhC-CCceEEEEcCCCH---HH-------------HHHHHHHHHHHh---C--CC
Confidence 34779999997654 346777777775 6899999999982 11 244555554433 1 13
Q ss_pred CeEEEEEcChhHHHHHHHHHhC---CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCC-hhhH---
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS-VEDL--- 688 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 688 (771)
+++.|+||||||.+++.++.+. ++.+.++++.++....... ..... .. ....+. .+. ....
T Consensus 77 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~---~~~~~---~~-----~~~~~~-~~~~~~~~~~~ 144 (244)
T 2cb9_A 77 GPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSI---TADTE---ND-----DSAAYL-PEAVRETVMQK 144 (244)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCC---CCC---------------CCS-CHHHHHHHTHH
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccc---ccccc---HH-----HHHHHh-HHHHHHHHHHH
Confidence 5799999999999999998765 5678888887765321000 00000 00 000000 000 0000
Q ss_pred -HHHhhcCc-cccccCCCCcEEEEeeC--CCCccCcHHHHHHHHHHHhC-CCCEEEEEeCCCCcc-CCCCCChHHHHHHH
Q 004149 689 -TRFHSKSP-ISHISKVKTPTIFLLGA--QDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHG-IERPQSDFESFLNI 762 (771)
Q Consensus 689 -~~~~~~sp-~~~~~~i~~P~Lii~G~--~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~-~~~~~~~~~~~~~i 762 (771)
..+..... ......+++|+++++|+ .|.. ++.... .+.+. ..++++..+++ +|. +...+....+...+
T Consensus 145 ~~~~~~~~~~~~~~~~i~~Pvl~i~g~~~~D~~-~~~~~~----~w~~~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i 218 (244)
T 2cb9_A 145 KRCYQEYWAQLINEGRIKSNIHFIEAGIQTETS-GAMVLQ----KWQDAAEEGYAEYTGYG-AHKDMLEGEFAEKNANII 218 (244)
T ss_dssp HHHHHHHHHHCCCCSCBSSEEEEEECSBCSCCC-HHHHTT----SSGGGBSSCEEEEECSS-BGGGTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcCCCEEEEEccCccccc-cccchh----HHHHhcCCCCEEEEecC-ChHHHcChHHHHHHHHHH
Confidence 00111000 12346788999999999 8873 322222 22221 23588999986 883 32234445667778
Q ss_pred HHHHHHH
Q 004149 763 GLWFKKY 769 (771)
Q Consensus 763 ~~wl~~~ 769 (771)
.+||.+.
T Consensus 219 ~~~L~~~ 225 (244)
T 2cb9_A 219 LNILDKI 225 (244)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 8888643
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-09 Score=108.30 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=76.8
Q ss_pred CCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 536 CDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|+||++||.+.... ...|......|+++||.|+++|++| +|.+. ...+++.+.++.+++.
T Consensus 6 ~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g---~g~s~----------~~~~~~~~~i~~~~~~-- 70 (285)
T 1ex9_A 6 TKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSE----------VRGEQLLQQVEEIVAL-- 70 (285)
T ss_dssp CSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHH----------HHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCC---CCCch----------hhHHHHHHHHHHHHHH--
Confidence 4578999999765421 2367778889999999999999998 44332 1245555555555544
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
.+.+++.|+||||||.++..++.++|+.++++|++++..
T Consensus 71 ~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 235689999999999999999999999999999988853
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-08 Score=104.12 Aligned_cols=238 Identities=13% Similarity=0.077 Sum_probs=125.8
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVH 146 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 146 (771)
..+.+.++++... .....+... ...+...+|+| +|+.|+.....+ .+.+|+ .++............
T Consensus 93 ~dg~i~v~d~~~~-~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 93 SRGIIRIINPITM-QCIKHYVGH-----GNAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp TTCEEEEECTTTC-CEEEEEESC-----CSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTTEEEEEECSTTSCS
T ss_pred CCCEEEEEEchhc-eEeeeecCC-----CCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecCeEEEEeccccccc
Confidence 4457777766432 112222212 25688999999 899888766543 355552 333333331101111
Q ss_pred ccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004149 147 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 147 g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
+ .+..+.|+|||+.|+..+.+ ..|.+||+.
T Consensus 162 ~------~v~~~~~~~~~~~l~~~~~d--------------------------------------------g~i~i~d~~ 191 (366)
T 3k26_A 162 D------EVLSADYDLLGEKIMSCGMD--------------------------------------------HSLKLWRIN 191 (366)
T ss_dssp S------CEEEEEECTTSSEEEEEETT--------------------------------------------SCEEEEESC
T ss_pred C------ceeEEEECCCCCEEEEecCC--------------------------------------------CCEEEEECC
Confidence 1 23689999999998886543 456666666
Q ss_pred CCceeecc---------------------------CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 227 SGEVQAVK---------------------------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 227 ~~~~~~l~---------------------------~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
+++..... .......+..+.|+ ++. |+..+ ..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~----l~~~~---------------~d 250 (366)
T 3k26_A 192 SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL----ILSKS---------------CE 250 (366)
T ss_dssp SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE----EEEEC---------------SS
T ss_pred CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE----EEEEe---------------cC
Confidence 54322110 01134456778888 554 55544 23
Q ss_pred ceeEEEecccccchhhhhhhhcCCCC-CCcceecCCCCccccceeecCC--CCEEEEEecCCCCCCCCccccccceeeec
Q 004149 280 CALYAVRVSLYKSEASELELKESSSE-DLPVVNLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~lt~~~~~~~~p~~SpD--G~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
..|.++|+.... ..+........ ......+..+...+....|||| |+.|+..+.+ ..|++||+
T Consensus 251 ~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----------g~i~vwd~ 316 (366)
T 3k26_A 251 NAIVCWKPGKME---DDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV-----------GKLYVWDL 316 (366)
T ss_dssp SEEEEEEESSTT---CCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT-----------SCEEEEEC
T ss_pred CEEEEEeCCCcc---ccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC-----------CcEEEEEC
Confidence 467777762110 00000000000 0012333344556788999999 9988877654 35899998
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
.+++..... ...+.... ....+..++|+||++.|+ +...++...+|.
T Consensus 317 ~~~~~~~~~------~~~~~~~~-------~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd 363 (366)
T 3k26_A 317 EVEDPHKAK------CTTLTHHK-------CGAAIRQTSFSRDSSILI-AVCDDASIWRWD 363 (366)
T ss_dssp CSSSGGGCE------EEEECCTT-------CCSCEEEEEECTTSSEEE-EEETTSEEEEEE
T ss_pred CCCCCcccc------ceEEcccc-------cCCceEEEEeCCCCCeEE-EEeCCCEEEEEE
Confidence 876542210 00000000 012355788999998664 555566555553
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=117.95 Aligned_cols=131 Identities=21% Similarity=0.164 Sum_probs=90.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHH-CCcEEEEECCCCC-CCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRGS-LGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~-~G~~V~~~d~rG~-~~~g~~~~~~~~~~ 591 (771)
+.|.+.+ .+|.|... .++.|+||++|||++....... ......|++ .|++|+.+|||.. -|+.... .....
T Consensus 89 ~edcl~l--nv~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~ 162 (529)
T 1p0i_A 89 SEDCLYL--NVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPEA 162 (529)
T ss_dssp CSCCCEE--EEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTS
T ss_pred CCcCCeE--EEeeCCCC--CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCC--CCCCC
Confidence 3455555 47788742 2678999999998865543321 122345655 7999999999942 1121110 00112
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCcc
Q 004149 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 651 (771)
.+...+.|+.++++|+.++ ...|++||.|+|+|.||.+++.++... ..+|+++|+.+|..
T Consensus 163 ~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 227 (529)
T 1p0i_A 163 PGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 227 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred cCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcc
Confidence 2333488999999999886 247999999999999999999888753 45899999999865
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.6e-10 Score=118.63 Aligned_cols=112 Identities=9% Similarity=-0.009 Sum_probs=80.7
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||.+... ...|.. .+..|.+ .||.|+++|+||.+... ....... .....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~---~~~~~~~-~~~~~~dl~~li~~L~~~~g 142 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTE---YTQASYN-TRVVGAEIAFLVQVLSTEMG 142 (452)
T ss_dssp TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSC---HHHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCc---hhHhHhh-HHHHHHHHHHHHHHHHHhcC
Confidence 4568999999977653 245666 4566665 49999999999843322 1100000 01225677788888865434
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.+++.|+|||+||.+|+.++.++|++++++++.+|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 567899999999999999999999999999999988764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.6e-08 Score=112.36 Aligned_cols=241 Identities=11% Similarity=0.077 Sum_probs=142.1
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCC--CCeEEEEecCCC
Q 004149 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPEN 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~ 121 (771)
..-..++||+.++... ..+.+.+|++........ .+.. ..+.+...+|||+ |+.|+..+..+
T Consensus 13 ~~l~~s~dg~~latg~---------~dg~I~vwd~~~~~~~~~~~l~~-----h~~~V~~l~~s~~~~~~~l~s~s~Dg- 77 (753)
T 3jro_A 13 HDAVLDYYGKRLATCS---------SDKTIKIFEVEGETHKLIDTLTG-----HEGPVWRVDWAHPKFGTILASCSYDG- 77 (753)
T ss_dssp EEECCCSSSCCEEEEE---------TTTEEEEEEEETTEEEEEEEECC-----CSSCEEEEEECCTTSCSEEEEEETTS-
T ss_pred EEEEECCCCCeEEEEE---------CCCcEEEEecCCCCCccceeccC-----CcCceEEEEecCCCCCCEEEEEeCCC-
Confidence 3344577888777653 234666666643222111 1211 2256889999998 99998776543
Q ss_pred CCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004149 122 ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
.+.+| ..+....+.... ...+ .+.++.|+|+ |+.|+..+.
T Consensus 78 ----~I~vwd~~~~~~~~~~~~~-~h~~------~V~~v~~sp~~~~~~l~sgs~------------------------- 121 (753)
T 3jro_A 78 ----KVLIWKEENGRWSQIAVHA-VHSA------SVNSVQWAPHEYGPLLLVASS------------------------- 121 (753)
T ss_dssp ----CEEEEEEETTEEEEEEEEC-CCSS------CEEEEEECCGGGCSEEEEEET-------------------------
T ss_pred ----eEEEEECCCCccccccccc-CCCC------CeEEEEECCCCCCCEEEEEeC-------------------------
Confidence 34444 233322222221 1111 2368999999 888888643
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCc---eeeccCCCCCCccceEEEec-------------CCCCCccEEEEE
Q 004149 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVFV 261 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~wsp-------------Dg~~~~~~l~~~ 261 (771)
...|.+||+.++. ...+ ......+..+.|+| ||+. |+..
T Consensus 122 -------------------dg~I~vwdl~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~----l~sg 176 (753)
T 3jro_A 122 -------------------DGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTG 176 (753)
T ss_dssp -------------------TSEEEEEECCSSSCCCCEEE--ECCSSCEEEEEECCCC---------CGGGCC----EEEE
T ss_pred -------------------CCcEEEEEeecCCCcceeEe--ecCCCceEEEEecCcccccccccccCCCCCE----EEEE
Confidence 3578999988763 2223 23445678899999 5776 7766
Q ss_pred eecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-----cceecCCCCccccceeecCC---CCEEEE
Q 004149 262 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-----PVVNLTESISSAFFPRFSPD---GKFLVF 333 (771)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~lt~~~~~~~~p~~SpD---G~~l~f 333 (771)
+ .+..|.++|+ .++ ....+..+...+....|+|| |+.|+.
T Consensus 177 s---------------~dg~I~iwd~-----------------~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 177 G---------------ADNLVKIWKY-----------------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp E---------------TTSCEEEEEE-----------------ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred E---------------CCCeEEEEec-----------------cCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 5 2335777776 222 12345566777899999999 888877
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
.+.+. .|.+||+.++......... . ... +...+..++|+|||+.|+ +...++..
T Consensus 225 ~s~Dg-----------~I~iwd~~~~~~~~~~~~~-------~---~~~----~~~~v~~l~~spdg~~l~-s~s~Dg~I 278 (753)
T 3jro_A 225 VSQDR-----------TCIIWTQDNEQGPWKKTLL-------K---EEK----FPDVLWRASWSLSGNVLA-LSGGDNKV 278 (753)
T ss_dssp EESSS-----------CEEEEEESSSSSCCBCCBS-------S---SSC----CSSCCCCEEECTTTCCEE-EECSSSCE
T ss_pred EecCC-----------EEEEecCCCCCCcceeEEe-------c---cCC----CCCceEEEEEcCCCCEEE-EEcCCCEE
Confidence 66553 4888888775432110000 0 000 112456789999998664 44456665
Q ss_pred EEEEEE
Q 004149 414 VIISVN 419 (771)
Q Consensus 414 ~l~~~d 419 (771)
.+|.++
T Consensus 279 ~vwd~~ 284 (753)
T 3jro_A 279 TLWKEN 284 (753)
T ss_dssp ECCBCC
T ss_pred EEEecC
Confidence 666443
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=3e-09 Score=117.65 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=90.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHH-HCCcEEEEECCCCC-CCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLS-SVGYSLLIVNYRGS-LGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la-~~G~~V~~~d~rG~-~~~g~~~~~~~~~~ 591 (771)
+.|.+.+ .+|.|... .++.|+||++|||++....... ......|+ +.|++|+.+|||.. -|+.... .....
T Consensus 91 sedcl~l--nv~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~ 164 (537)
T 1ea5_A 91 SEDCLYL--NIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEA 164 (537)
T ss_dssp CSCCCEE--EEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSS
T ss_pred CCcCCeE--EEeccCCC--CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCC--CCCCC
Confidence 4456555 46778742 3678999999998876543321 12234555 78999999999942 1121110 00112
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCcc
Q 004149 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 651 (771)
.+...+.|+.++++|+.++. ..|++||.|+|+|.||.++..++.. ...+|+++|+.+|..
T Consensus 165 ~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 229 (537)
T 1ea5_A 165 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 229 (537)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred cCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCc
Confidence 23345899999999998862 3699999999999999999988764 245899999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-07 Score=100.26 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=126.6
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCC----cccccccCCCcccceeecC-CCCeEEEE
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQ----TVHGSVYADGWFEGISWNS-DETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~wSp-Dg~~la~~ 170 (771)
+.+...+||| ||++||.....+ .+.+| ..+.......... ...-.....+.+..+.|+| +++.|+..
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 5688999999 999998776543 34444 2222211111000 0000000112336899999 66666664
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
+. ...|.+||+.+++.... ......+....|+|+
T Consensus 119 ~~--------------------------------------------d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~ 152 (408)
T 4a11_B 119 SF--------------------------------------------DKTLKVWDTNTLQTADV--FNFEETVYSHHMSPV 152 (408)
T ss_dssp ET--------------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEEEEECSS
T ss_pred eC--------------------------------------------CCeEEEeeCCCCcccee--ccCCCceeeeEeecC
Confidence 32 36899999999887666 344455678889986
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCC
Q 004149 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~ 329 (771)
+.. ...|+..+ ....|+++|+ .++ ....+..+...+....|+|+|+
T Consensus 153 ~~~-~~~~~~~~---------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 153 STK-HCLVAVGT---------------RGPKVQLCDL-----------------KSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp CSS-CCEEEEEE---------------SSSSEEEEES-----------------SSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred CCC-CcEEEEEc---------------CCCeEEEEeC-----------------CCcceeeeecCCCCcEEEEEECCCCC
Confidence 542 11154443 3347888898 444 3556666777889999999999
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce--eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI--VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
++++....+ ..|.+||+.++......... ....... ...+. .....+..++|+|||+.|+. .
T Consensus 200 ~ll~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~l~~-~ 263 (408)
T 4a11_B 200 YILATASAD----------SRVKLWDVRRASGCLITLDQHNGKKSQAV----ESANT-AHNGKVNGLCFTSDGLHLLT-V 263 (408)
T ss_dssp TEEEEEETT----------SCEEEEETTCSSCCSEECCTTTTCSCCCT----TTSSC-SCSSCEEEEEECTTSSEEEE-E
T ss_pred cEEEEEcCC----------CcEEEEECCCCCcccccccccccccceee----ccccc-cccCceeEEEEcCCCCEEEE-e
Confidence 754444332 35888888765421110000 0000000 00000 01123456789999987654 4
Q ss_pred eeCCeeEEEEEECCCCcEEE
Q 004149 408 IWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~~ 427 (771)
..++. |..+|+.+++...
T Consensus 264 ~~dg~--i~vwd~~~~~~~~ 281 (408)
T 4a11_B 264 GTDNR--MRLWNSSNGENTL 281 (408)
T ss_dssp ETTSC--EEEEETTTCCBCC
T ss_pred cCCCe--EEEEECCCCccce
Confidence 44444 5555777776543
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.87 E-value=5.9e-09 Score=107.23 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=78.3
Q ss_pred CCCcEEEEEcCCCCCCCC----CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004149 535 SCDPLIVVLHGGPHSVSL----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~----~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
+..|+||++||....... ..|....+.|+++||.|+++|++|.+.... + ....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~g~s~~------~----~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDG------P----NGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSSCCSSS------T----TSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCC------C----CCCHHHHHHHHHHHHHH
Confidence 345789999997654311 457778899999999999999998443211 0 12345566666555554
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
.+.+++.|+||||||.++..++.++|++++++|++++..
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 245789999999999999999999999999999988754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=104.52 Aligned_cols=251 Identities=10% Similarity=0.005 Sum_probs=131.2
Q ss_pred eeEEEEEEeecCCCCc-cceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccc
Q 004149 71 KKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 147 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g 147 (771)
.+.+.+|++...+... ..+... ...+...+|||||++|+.....+ .+.+| ..+....+......+
T Consensus 63 dg~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~v-- 130 (368)
T 3mmy_A 63 ANDVRCWEVQDSGQTIPKAQQMH-----TGPVLDVCWSDDGSKVFTASCDK-----TAKMWDLSSNQAIQIAQHDAPV-- 130 (368)
T ss_dssp TSEEEEEEECTTSCEEEEEEEEC-----SSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECSSCE--
T ss_pred CCcEEEEEcCCCCceeEEEeccc-----cCCEEEEEECcCCCEEEEEcCCC-----cEEEEEcCCCCceeeccccCce--
Confidence 4567777775433222 222222 25688999999999998776543 55666 333433333322222
Q ss_pred cccCCCcccceee--cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004149 148 SVYADGWFEGISW--NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 148 ~~~~~~~~~~~~w--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
..+.| +|||+.|+..+.+.... .|+............. . ............+.......+.+|++
T Consensus 131 --------~~~~~~~~~~~~~l~~~~~dg~i~--vwd~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 131 --------KTIHWIKAPNYSCVMTGSWDKTLK--FWDTRSSNPMMVLQLP-E--RCYCADVIYPMAVVATAERGLIVYQL 197 (368)
T ss_dssp --------EEEEEEECSSCEEEEEEETTSEEE--EECSSCSSCSEEEECS-S--CEEEEEEETTEEEEEEGGGCEEEEEC
T ss_pred --------EEEEEEeCCCCCEEEEccCCCcEE--EEECCCCcEEEEEecC-C--CceEEEecCCeeEEEeCCCcEEEEEe
Confidence 68899 99999888877655322 2322111111100000 0 00111111123334445677888888
Q ss_pred cCCceeecc-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCC
Q 004149 226 NSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 304 (771)
Q Consensus 226 ~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 304 (771)
......... ............+.+++......++..+ .+..|.++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~dg~i~i~~~----------------- 245 (368)
T 3mmy_A 198 ENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS---------------IEGRVAIHYI----------------- 245 (368)
T ss_dssp SSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE---------------TTSEEEEEES-----------------
T ss_pred ccccchhhhccccccCCCceEEEcccCCCCCCeEEEec---------------CCCcEEEEec-----------------
Confidence 765432221 1122223444555555542111122222 3346777776
Q ss_pred CCCc----ceecCCCCc------------cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 305 EDLP----VVNLTESIS------------SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 305 ~~~~----~~~lt~~~~------------~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.... ...+..+.. .+....|||||+.|+..+.+. .|.+||+.+++.......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~- 313 (368)
T 3mmy_A 246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-----------RFSFWDKDARTKLKTSEQ- 313 (368)
T ss_dssp SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS-----------CEEEEETTTTEEEEECCC-
T ss_pred CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC-----------eEEEEECCCCcEEEEecC-
Confidence 2221 122222221 478899999999988777553 489999887553211110
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
+...+..++|+|||+.|+..+.
T Consensus 314 ------------------~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 314 ------------------LDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp ------------------CSSCEEEEEECTTSSCEEEEEC
T ss_pred ------------------CCCCceEEEECCCCCeEEEEec
Confidence 0113457889999998776654
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=116.87 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=79.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHHHHC-CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~~-G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||.+... ...|.. .+..|.++ ||.|+++|+||.+... ..... .......+|+.+.++++.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~---~~~~~-~~~~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAE---YTQAV-QNIRIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSC---HHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccc---cHHHH-HhHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999976553 235655 56677654 9999999999843321 11000 0001124677777888865433
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.+++.|+|||+||.+|+.++.++|++++++++.+|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 557899999999999999999999999999999988764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-07 Score=97.51 Aligned_cols=199 Identities=12% Similarity=0.059 Sum_probs=114.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCc-ccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
+.+....|||+ .||..+... .+.+|+ .+....+..+... ..+. +.+++|||||+.|+..+.+
T Consensus 15 ~~v~~~~~s~~--~las~~~D~-----~i~lw~~~~~~~~~~~~~~~~~h~~~------v~~v~~sp~~~~las~s~D-- 79 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDR-----KIKLVSVKYDDFTLIDVLDETAHKKA------IRSVAWRPHTSLLAAGSFD-- 79 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSS-----CEEEEECSSSCCEEEEEECTTCCCSC------EEEEEECTTSSEEEEEETT--
T ss_pred CceeeeccCCC--EEEEEcCCC-----EEEEEEecCCCeEEEEEEecCCccCC------EEEEEECCCCCEEEEEeCC--
Confidence 45778899998 666554432 344552 2222222222112 1122 3689999999988886543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC-------c-eeeccCCCCCCccceEEE
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-------E-VQAVKGIPKSLSVGQVVW 247 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-------~-~~~l~~~~~~~~~~~~~w 247 (771)
..|.+||+..+ + ...+ ......+..++|
T Consensus 80 ------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~ 115 (330)
T 2hes_X 80 ------------------------------------------STVSIWAKEESADRTFEMDLLAII--EGHENEVKGVAW 115 (330)
T ss_dssp ------------------------------------------SCEEEEEC-------CCCEEEEEE--C----CEEEEEE
T ss_pred ------------------------------------------CcEEEEEcccCcCccccceeEEEE--cCCCCcEEEEEE
Confidence 45777776432 1 1223 233446788999
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---c-ceecCCCCcccccee
Q 004149 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---P-VVNLTESISSAFFPR 323 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~-~~~lt~~~~~~~~p~ 323 (771)
+|||+. |+..+ .+..|.++|+. .++ + ...+..+...+....
T Consensus 116 sp~g~~----las~s---------------~D~~v~iwd~~----------------~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 116 SNDGYY----LATCS---------------RDKSVWIWETD----------------ESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CTTSCE----EEEEE---------------TTSCEEEEECC----------------TTCCCCEEEEEECCCSSCEEEEE
T ss_pred CCCCCE----EEEEe---------------CCCEEEEEecc----------------CCCCCeEEEEEeccCCCceEEEE
Confidence 999997 77665 23367777762 111 1 234566677789999
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC-E
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC-T 402 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~-~ 402 (771)
|+|||+.|+..+.+. .|.+||..++.... ...+.. +...+..+.|+|++. .
T Consensus 161 ~~p~~~~l~s~s~D~-----------~i~iW~~~~~~~~~--------~~~~~~---------h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 161 WHPSEALLASSSYDD-----------TVRIWKDYDDDWEC--------VAVLNG---------HEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp ECSSSSEEEEEETTS-----------CEEEEEEETTEEEE--------EEEECC---------CSSCEEEEEECCSSSSC
T ss_pred ECCCCCEEEEEcCCC-----------eEEEEECCCCCeeE--------EEEccC---------CCCcEEEEEecCCCCee
Confidence 999999988777653 47777765432111 111100 011234567999832 3
Q ss_pred EEEEeeeCCeeEEEEEE
Q 004149 403 MLLSSIWGSSQVIISVN 419 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d 419 (771)
++++...++...||.+.
T Consensus 213 ~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEEEETTSCEEEEEEE
T ss_pred EEEEEeCCCeEEEEEec
Confidence 45666778888888765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-07 Score=101.25 Aligned_cols=261 Identities=10% Similarity=0.038 Sum_probs=135.6
Q ss_pred hhcccceeEEEEEEeec---CCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEE
Q 004149 65 LLANKRKKFMLSTVISK---ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEF 139 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~---~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~ 139 (771)
+......+.+.+|++.. .......++.. ....+...+|+|+|+.|+..... +.-.+|.+. ..+...+..
T Consensus 79 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~ 152 (437)
T 3gre_A 79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTYD----CSSTVTQITMIPNFDAFAVSSKD--GQIIVLKVNHYQQESEVKFL 152 (437)
T ss_dssp EEEEETTSEEEEEEHHHHHTTCCCSCSEEEE----CSSCEEEEEECTTSSEEEEEETT--SEEEEEEEEEEEETTEEEEE
T ss_pred EEEecCCceEEEeECcccccCcccceeeecc----CCCCEEEEEEeCCCCEEEEEeCC--CEEEEEEeccccCCceeecc
Confidence 33344556778877754 21111122211 12568899999999999876654 333344443 133322222
Q ss_pred ecCCccccccc----CCCccccee--ecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccC
Q 004149 140 HVPQTVHGSVY----ADGWFEGIS--WNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 213 (771)
Q Consensus 140 ~~~~~~~g~~~----~~~~~~~~~--wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~ 213 (771)
... .+....+ .++....+. |+||++.|+..+
T Consensus 153 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------------ 189 (437)
T 3gre_A 153 NCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT------------------------------------------ 189 (437)
T ss_dssp EEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE------------------------------------------
T ss_pred ccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEe------------------------------------------
Confidence 111 1100000 011112333 667787776653
Q ss_pred CccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 214 GKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 214 ~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
....|.+||+.+++.... .+.+....+..++|+|||+. |+..+ .+..|.++|+
T Consensus 190 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~---------------~dg~i~iwd~----- 243 (437)
T 3gre_A 190 --NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCV----LILGT---------------TRGIIDIWDI----- 243 (437)
T ss_dssp --TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCE----EEEEE---------------TTSCEEEEET-----
T ss_pred --CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCE----EEEEc---------------CCCeEEEEEc-----
Confidence 236899999988876444 21113457889999999986 66655 3346888887
Q ss_pred hhhhhhhhcCCCCCCcc-eecC-CCCccccce----eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcc
Q 004149 293 EASELELKESSSEDLPV-VNLT-ESISSAFFP----RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 366 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~-~~lt-~~~~~~~~p----~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 366 (771)
..++. ..+. .+...+... .|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 244 ------------~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 244 ------------RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-----------TFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp ------------TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-----------EEEEEEETTTTEEEEEEE
T ss_pred ------------CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC-----------CcEEEEEcCCCcEEEEEE
Confidence 44443 3332 334445555 777888877765544 358899988765322111
Q ss_pred ceeeEEecccc-cC-----CCCCcc-cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 367 KIVDVIPVVQC-AE-----GDCFPG-LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 367 ~~~~~~~~~~~-~~-----~~~f~g-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.....+..... +. +..+.| .+...+..++|+ +++ ++++...++. |..+|+.+++...
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~--i~~wd~~~~~~~~ 364 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSS--IVMFSLNELSSSK 364 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTE--EEEEETTCGGGCE
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCe--EEEEECCCcccce
Confidence 11000000000 00 001111 122235677888 665 5566655554 5555777776443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-06 Score=90.46 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=146.5
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+|||++ .||...+. .+.+| ..++..++...... .+ .+.+++|+|||+.|+..+.
T Consensus 28 ~~~l~WS~~~-~lAvg~D~------tV~iWd~~tg~~~~~~~~~~~-~~------~V~~v~~~~~~~~l~sgs~------ 87 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQMEQP-GE------YISSVAWIKEGNYLAVGTS------ 87 (318)
T ss_dssp CBCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECCST-TC------CEEEEEECTTSSEEEEEET------
T ss_pred ceEEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEecCC-CC------eEEEEEECCCCCEEEEEEC------
Confidence 3568999987 67764422 35667 35555555543221 11 2368999999999987643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
+..|.+||+.+++.... .... ......++++++. +
T Consensus 88 --------------------------------------Dg~v~iw~~~~~~~~~~--~~~h-~~~~~~~~~~~~~----l 122 (318)
T 4ggc_A 88 --------------------------------------SAEVQLWDVQQQKRLRN--MTSH-SARVGSLSWNSYI----L 122 (318)
T ss_dssp --------------------------------------TSEEEEEETTTTEEEEE--EECC-SSCEEEEEEETTE----E
T ss_pred --------------------------------------CCcEEEeecCCceeEEE--ecCc-cceEEEeecCCCE----E
Confidence 35789999999876554 2221 2233467777775 5
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..+ ....+..++... .......+..+........|+++|+.|+..+.+.
T Consensus 123 ~s~~---------------~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 172 (318)
T 4ggc_A 123 SSGS---------------RSGHIHHHDVRV---------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 172 (318)
T ss_dssp EEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEe---------------cCCceEeeecCC---------------CceeEEEEcCccCceEEEEEcCCCCEEEEEecCc
Confidence 5444 222455555410 1122344555666788899999999988766553
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|.+||+.+++.......... . ....+....|++++..++..........+..+
T Consensus 173 -----------~i~iwd~~~~~~~~~~~~~~~-----------~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw 226 (318)
T 4ggc_A 173 -----------LVNVWPSAPGEGGWVPLQTFT-----------Q----HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226 (318)
T ss_dssp -----------CEEEEESSCBTTBSCCSEEEC-----------C----CCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred -----------ceeEEECCCCcccccceeeec-----------c----cCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence 488889887654322111100 0 00123456688888777766554444456666
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
+..++................++++++.+++.....+ ..|++.++.+
T Consensus 227 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d--~~i~iwd~~~ 273 (318)
T 4ggc_A 227 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPT 273 (318)
T ss_dssp ETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT--CCEEEEETTT
T ss_pred ecccccccccccceeeeeeeeecccccceEEEEEcCC--CEEEEEECCC
Confidence 8877776666555555666788999998877654333 3466656543
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-09 Score=107.33 Aligned_cols=121 Identities=18% Similarity=0.147 Sum_probs=85.5
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCC--------CCCcc----hHHHHHHHHCCcE---EEEECCCCCCCCChhhhh
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSV--------SLSSY----SKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~--------~~~~~----~~~~~~la~~G~~---V~~~d~rG~~~~g~~~~~ 586 (771)
.+....|. .. ..+.||++||..... ....| ...+..|.++||. |+++|++| +|.+...
T Consensus 29 gG~~~~p~---~~-~~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g---~G~S~~~ 101 (342)
T 2x5x_A 29 GGFGGGSC---TA-TKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLS---SSEQGSA 101 (342)
T ss_dssp CEEECCSS---CC-CSCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSC---HHHHTCG
T ss_pred CcccCCCC---CC-CCCeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCC---CCccCCc
Confidence 44555554 22 334589999976532 13356 6788899999998 99999998 4443211
Q ss_pred cCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCccc
Q 004149 587 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~ 652 (771)
.. ........+++.+.++.+.+.. +.+++.|+||||||.++..++.++ |++++++|+++|...
T Consensus 102 ~~-~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 102 QY-NYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp GG-CCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred cc-cCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 10 0112234678888888887653 347899999999999999999988 889999999988654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-07 Score=97.61 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=58.2
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCcc-ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 399 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~d 399 (771)
..+|+|||++++.....+.. .|.+. ....|+++|+++++.. ..+... . ...++|+||
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~-~~~~~~~~~~v~viD~~t~~~v----------~~i~~~----------~-p~~ia~spd 315 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGK-EGTHKFPAAEIWVMDTKTKQRV----------ARIPGR----------D-ALSMTIDQQ 315 (361)
T ss_dssp CEEEETTTTEEEEEEESSCC-TTCTTCCCSEEEEEETTTTEEE----------EEEECT----------T-CCEEEEETT
T ss_pred EEEEecCCCeEEEEEccCCC-cccccCCCceEEEEECCCCcEE----------EEEecC----------C-eeEEEECCC
Confidence 36899999987655431100 01111 1357999998876531 111110 1 346789999
Q ss_pred CCEEEEEeeeCCeeEEEEEECCCC--cEEEe-cCCCCCceeeEEeecCC
Q 004149 400 GCTMLLSSIWGSSQVIISVNVSSG--ELLRI-TPAESNFSWSLLTLDGD 445 (771)
Q Consensus 400 g~~l~~~~~~~~~~~l~~~d~~tg--~~~~l-~~~~~~~~~~~~s~d~~ 445 (771)
|++||.+ +. ..|..+|++++ ++... ...........++|+|+
T Consensus 316 g~~l~v~-n~---~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTL-DG---GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEE-CS---SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEe-CC---CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9977644 33 55777799999 65443 23333345567888876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.5e-07 Score=95.11 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=52.5
Q ss_pred eeecCCCCEEEEEecCCCCCCCCcc-ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 322 PRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
..++|||++|+....... .+.|. ....|+++|+++++.. ..+... .....+.|+|||
T Consensus 272 ~~~s~d~~~lyV~~~~~~--~~~~~~~~~~V~VID~~t~~vv----------~~i~~g----------~~p~~i~~s~Dg 329 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQS--AWKLHAAAKEVTSVTGLVGQTS----------SQISLG----------HDVDAISVAQDG 329 (373)
T ss_pred EEECCCCCEEEEEeccCC--cccccCCCCeEEEEECCCCEEE----------EEEECC----------CCcCeEEECCCC
Confidence 578999998766544310 01111 2357999998876641 111110 024577899999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 401 CTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
+++++..+. +...|..+|+.++++...
T Consensus 330 ~~~l~v~~~-~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 330 GPDLYALSA-GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEcC-CCCeEEEEECCCCCEEee
Confidence 966666553 235789999999987765
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.6e-09 Score=115.19 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=80.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcc-hHHHHHHH-HCCcEEEEECCC-CCCCCChhhh---h-cCCCCccccchhhHHHHHHH
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFLS-SVGYSLLIVNYR-GSLGFGEEAL---Q-SLPGKVGSQDVNDVLTAIDH 606 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la-~~G~~V~~~d~r-G~~~~g~~~~---~-~~~~~~~~~~~~D~~~~i~~ 606 (771)
.++.|+||++|||++....... ......|+ +.|++|+.+||| |.-||..... . ......+...+.|+.++++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 4678999999999876544321 12234555 479999999999 3222221100 0 00111223348899999999
Q ss_pred HHHcC---CCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCcc
Q 004149 607 VIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 607 l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 651 (771)
+.++. ..|++||.|+|+|.||.++..++... ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 99863 36899999999999999998887652 36899999988854
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-09 Score=109.90 Aligned_cols=208 Identities=13% Similarity=0.072 Sum_probs=112.6
Q ss_pred EEEEEcC--CCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCC
Q 004149 539 LIVVLHG--GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HG--g~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~ 615 (771)
.|+++|| ++.. ...|...+..|. .+|.|+.+|+||.+. +... ........++++.+.+ +.+... ...
T Consensus 91 ~l~~~hg~g~~~~--~~~~~~l~~~L~-~~~~v~~~d~~G~g~---~~~~--~~~~~~~~~~~~a~~~~~~i~~~--~~~ 160 (319)
T 2hfk_A 91 VLVGCTGTAANGG--PHEFLRLSTSFQ-EERDFLAVPLPGYGT---GTGT--GTALLPADLDTALDAQARAILRA--AGD 160 (319)
T ss_dssp EEEEECCCCTTCS--TTTTHHHHHTTT-TTCCEEEECCTTCCB---C-----CBCCEESSHHHHHHHHHHHHHHH--HTT
T ss_pred cEEEeCCCCCCCc--HHHHHHHHHhcC-CCCceEEecCCCCCC---Cccc--ccCCCCCCHHHHHHHHHHHHHHh--cCC
Confidence 7999997 3332 446777777775 689999999999433 2000 0001112233333222 222222 123
Q ss_pred CeEEEEEcChhHHHHHHHHHhC----CCceeEEEecCCccchhhhhcCCCCCcch--hhhhccCCCCCcCCCCCChhhH-
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPSVEDL- 688 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 688 (771)
.++.|+|||+||.++..+|.+. ++.++++++.++........ ...+. ........ .+.. ......
T Consensus 161 ~p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~----~~~~~~~l~~~~~~~---~~~~-~~~~~~~ 232 (319)
T 2hfk_A 161 APVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEP----IEVWSRQLGEGLFAG---ELEP-MSDARLL 232 (319)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHH----HHHTHHHHHHHHHHT---CSSC-CCHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhH----HHHHHHHhhHHHHHh---hccc-cchHHHH
Confidence 6799999999999999999876 45688888887643210000 00000 00000000 0000 011111
Q ss_pred --HHHhhcCccccccCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHH
Q 004149 689 --TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765 (771)
Q Consensus 689 --~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~w 765 (771)
..+...........+++|+++++| .|..+++.. ...+.+. ....++++.++ ++|.....+....+.+.+.+|
T Consensus 233 ~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~~~~~~~~~~~~---~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~~ 307 (319)
T 2hfk_A 233 AMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGDWQEERGDWRAH---WDLPHTVADVP-GDHFTMMRDHAPAVAEAVLSW 307 (319)
T ss_dssp HHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSCCCGGGCCCSCC---CSSCSEEEEES-SCTTHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCCccccccchhhc---CCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHHH
Confidence 111110001124678899999999 999888764 2222111 12247888898 589743323566788889999
Q ss_pred HHHH
Q 004149 766 FKKY 769 (771)
Q Consensus 766 l~~~ 769 (771)
|++.
T Consensus 308 L~~~ 311 (319)
T 2hfk_A 308 LDAI 311 (319)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9764
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=107.94 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=72.7
Q ss_pred CCcEEEEEcCCCCCCCCCcc--hHHHHHHH-HCCcEEEEECCCCCCCCChhhhhc--C---CCCc----cccchhhHHHH
Q 004149 536 CDPLIVVLHGGPHSVSLSSY--SKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQS--L---PGKV----GSQDVNDVLTA 603 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~--~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~--~---~~~~----~~~~~~D~~~~ 603 (771)
..| ||++|||.+.... .+ ......++ +.|+.|+++|+|| ||++.... . ..+. ..+.++|+...
T Consensus 38 g~P-i~l~~Ggeg~~~~-~~~~~g~~~~lA~~~~~~Vi~~DhRg---~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~ 112 (446)
T 3n2z_B 38 GGS-ILFYTGNEGDIIW-FCNNTGFMWDVAEELKAMLVFAEHRY---YGESLPFGDNSFKDSRHLNFLTSEQALADFAEL 112 (446)
T ss_dssp TCE-EEEEECCSSCHHH-HHHHCHHHHHHHHHHTEEEEEECCTT---STTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHH
T ss_pred CCC-EEEEeCCCCcchh-hhhcccHHHHHHHHhCCcEEEEecCC---CCCCCCCCccccccchhhccCCHHHHHHHHHHH
Confidence 345 6777888764311 11 11233343 4589999999999 55543211 0 0111 12347888888
Q ss_pred HHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCC
Q 004149 604 IDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649 (771)
Q Consensus 604 i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p 649 (771)
++++.... .....++.++||||||.+|++++.++|+++.++|+.++
T Consensus 113 ~~~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 113 IKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 88887652 22345899999999999999999999999999988664
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=106.21 Aligned_cols=210 Identities=11% Similarity=0.059 Sum_probs=113.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d 614 (771)
..|.|+++||.+.. ...|...+..| ..+|.|+.+|++| +|.+... . ..++++.+. ++.+.+.. .
T Consensus 100 ~~~~l~~lhg~~~~--~~~~~~l~~~L-~~~~~v~~~d~~g---~~~~~~~--~-----~~~~~~a~~~~~~i~~~~--~ 164 (329)
T 3tej_A 100 NGPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIIGIQSPR---PNGPMQT--A-----ANLDEVCEAHLATLLEQQ--P 164 (329)
T ss_dssp SSCEEEEECCTTSC--CGGGGGGGGTS-CTTCEEEEECCCT---TTSHHHH--C-----SSHHHHHHHHHHHHHHHC--S
T ss_pred CCCcEEEEeCCccc--chHHHHHHHhc-CCCCeEEEeeCCC---CCCCCCC--C-----CCHHHHHHHHHHHHHHhC--C
Confidence 45789999997655 44666666666 5689999999998 4433211 1 124444333 33333331 2
Q ss_pred CCeEEEEEcChhHHHHHHHHHh---CCCceeEEEecCCccchhhhhcCC-----CCCcchhhhhccCCC-CCcCCCCCCh
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLCNLALMVGTT-----DIPDWCYVESYGSKG-KDSFTESPSV 685 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~ 685 (771)
..++.|+||||||.++..++.+ +|+.+..+++..+........... +.............. ........ .
T Consensus 165 ~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 243 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTS-T 243 (329)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSC-C
T ss_pred CCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhcccccc-H
Confidence 3689999999999999999998 899999999888765432111000 000000000000000 00000001 1
Q ss_pred hhHHHH----hhc-C--ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc-CCCCCChHH
Q 004149 686 EDLTRF----HSK-S--PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-IERPQSDFE 757 (771)
Q Consensus 686 ~~~~~~----~~~-s--p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~-~~~~~~~~~ 757 (771)
.....+ ... . .......+.+|++++.|+.|..++......+.+.. .+++++.++ ++|. +..+.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~~~~~~~w~~~~----~~~~~~~v~-g~H~~~~~~~~~~~ 318 (329)
T 3tej_A 244 ELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWI----AELDIYRQD-CAHVDIISPGTFEK 318 (329)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTTCCHHHHHTTTE----EEEEEEEES-SCGGGGGSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCCCCchhhHHHhc----CCcEEEEec-CChHHhCCChHHHH
Confidence 111111 000 0 00113456789999999999887765443332222 358888897 5776 333333334
Q ss_pred HHHHHHHHH
Q 004149 758 SFLNIGLWF 766 (771)
Q Consensus 758 ~~~~i~~wl 766 (771)
+...+.+||
T Consensus 319 ia~~l~~~L 327 (329)
T 3tej_A 319 IGPIIRATL 327 (329)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 445555554
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.5e-09 Score=119.18 Aligned_cols=129 Identities=21% Similarity=0.263 Sum_probs=86.1
Q ss_pred cCCCceEEEEEEecCCCC---CCCCCcEEEEEcCCCCCCCCCc-chHHHHHHHHC-CcEEEEECCCCCC-CCChhhhhcC
Q 004149 515 KGAQKPFEAIFVSSSHKK---DCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSV-GYSLLIVNYRGSL-GFGEEALQSL 588 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~---~~~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~-G~~V~~~d~rG~~-~~g~~~~~~~ 588 (771)
+.|.+.+ .+|.|.... ..++.|+||++|||++...... +.. ..|+++ |++|+.+|||... |+.....
T Consensus 108 sEdcL~l--~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~~~--- 180 (574)
T 3bix_A 108 SEDCLYL--NIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLSTGD--- 180 (574)
T ss_dssp CSCCCEE--EEEEEC--------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCCSS---
T ss_pred CCcCCEE--EEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcCCC---
Confidence 3455444 578887431 2356899999999987654432 222 345554 6999999999522 1111000
Q ss_pred CCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCc
Q 004149 589 PGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPL 650 (771)
Q Consensus 589 ~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~ 650 (771)
....+...+.|+.++++|+.++ ...|++||.|+|+|.||.++..++.... .+|+++|+.++.
T Consensus 181 ~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 181 QAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 0112234589999999999985 2368999999999999999998887543 568999988763
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.7e-08 Score=102.17 Aligned_cols=258 Identities=14% Similarity=0.064 Sum_probs=122.3
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcce--EEEecCCcccccccCCCcccceeecC--------CCCeEEEE
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLE--KEFHVPQTVHGSVYADGWFEGISWNS--------DETLIAYV 170 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~wSp--------Dg~~la~~ 170 (771)
...++|+++.||..+... .+.+| ..++.. .......+..+.| ..++|+| ||+.||..
T Consensus 94 ~~~~~~~~~~las~~~d~-----~v~lw~~~~~~~~~~~~~~~~~gH~~~v------~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDN-----TVRLIITKNETIITQHVLGGKSGHHNFV------NDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ---CCEEEEEEEEEETTS-----CEEEEEEETTEEEEEEEECTTTSCSSCE------EEEEEEEEECTTCSEEEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCC-----cEEEEECCCCccceeeeecccCCCCCce------EEEEEccccccccCCCCCEEEEE
Confidence 345577777777665443 34444 222222 2222222333333 7899998 89989887
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCCCCccceEEEec
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAP 249 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wsp 249 (771)
+.+ ..|.+||+.++.. ..+ ......+..++|+|
T Consensus 163 s~D--------------------------------------------~tv~~Wd~~~~~~~~~~--~~~~~~v~~v~~~p 196 (393)
T 4gq1_A 163 GDD--------------------------------------------CTLIIWRLTDEGPILAG--YPLSSPGISVQFRP 196 (393)
T ss_dssp ETT--------------------------------------------SEEEEEEEETTEEEEEE--EECSSCEEEEEEET
T ss_pred ECC--------------------------------------------CeEEEEECCCCceeeee--cCCCCCcEEEEECC
Confidence 543 5889999977654 333 34445677899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC-------C---CcceecCCCCccc
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-------D---LPVVNLTESISSA 319 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-------~---~~~~~lt~~~~~~ 319 (771)
++.. ++.++. .+..|.++|+........... ...... . ............+
T Consensus 197 ~~~~----~l~~~~--------------~d~~v~~wd~~t~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 197 SNPN----QLIVGE--------------RNGNIRIFDWTLNLSAEENSQ-TELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp TEEE----EEEEEE--------------TTSEEEEEETTCCC-----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred CCCc----eEEecC--------------CCCEEEEEECCCCcccccccc-cCCcccceEEecccccceeeeecccccccc
Confidence 9875 555542 223566777621100000000 000000 0 0000111223345
Q ss_pred cceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc-cCCCCCCccc
Q 004149 320 FFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY-SSSILSNPWL 397 (771)
Q Consensus 320 ~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~-~~~~~~~~~s 397 (771)
....|+ |||+.|+-.+.+. .+.+||+.++...........-+..+.. .....++- ........|+
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~-----------~i~vwd~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSG-----------AWLRWNLFANNDYNEISDSTMKLGPKNL--LPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp SEEEEETTTTCEEEEECTTS-----------EEEEEEC-------------------CC--SCSEEEECSSCCSSCCEEC
T ss_pred eeeeeecCCCCEEEEEeCCC-----------CEEEEECccCCCCceEeeecCccccEEE--ccccccccccCcceeEEEc
Confidence 667776 8999988766543 4778887765432211111000000000 00000000 0011233344
Q ss_pred c-CCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEE
Q 004149 398 S-DGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 398 ~-dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
+ .++.++++...++...| +|..+++.... ......+....|+|||+.|+...
T Consensus 325 ~~~~~~~~~sgs~Dg~V~l--wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQL--INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp SSCTTEEEEEETTTTEEEE--EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCEEEEEECCCCEEEE--EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 3 44445555555555555 47777764433 33334566678999999887665
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=101.60 Aligned_cols=90 Identities=3% Similarity=-0.002 Sum_probs=49.9
Q ss_pred hcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC--------CCCeEEEEecCCCCCCeEEEEec---CCc
Q 004149 66 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP--------SGSKLLVVRNPENESPIQFELWS---QSQ 134 (771)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP--------dG~~la~~~~~~~~~~~~~~~~~---~~~ 134 (771)
+.....+.+.+|++...... .+.....+....+.+...+||| ||+.||-.+.+. ...+|+ ++.
T Consensus 105 as~~~d~~v~lw~~~~~~~~-~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~-----tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 105 ACVCQDNTVRLIITKNETII-TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC-----TLIIWRLTDEGP 178 (393)
T ss_dssp EEEETTSCEEEEEEETTEEE-EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS-----EEEEEEEETTEE
T ss_pred EEEeCCCcEEEEECCCCccc-eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC-----eEEEEECCCCce
Confidence 33344456666666433211 1111123333446789999998 999999877654 566663 222
Q ss_pred ceEEEecCCcccccccCCCcccceeecCCCCe-EEEEe
Q 004149 135 LEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVA 171 (771)
Q Consensus 135 ~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~ 171 (771)
...+......+ .+++|+|++.. |+..+
T Consensus 179 ~~~~~~~~~~v----------~~v~~~p~~~~~l~~~~ 206 (393)
T 4gq1_A 179 ILAGYPLSSPG----------ISVQFRPSNPNQLIVGE 206 (393)
T ss_dssp EEEEEECSSCE----------EEEEEETTEEEEEEEEE
T ss_pred eeeecCCCCCc----------EEEEECCCCCceEEecC
Confidence 22333323222 58999999875 44443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-06 Score=90.30 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=61.8
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccc-cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
....++||+++|+...+... .|.|.. ..+|+++|+++++...- +.... ...++.+|+
T Consensus 283 q~~a~~~~~~~lyV~~~~~~--~~~hk~~~~~V~viD~~t~kv~~~----------i~vg~----------~~~~lavs~ 340 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRD--EWRHKTASRFVVVLDAKTGERLAK----------FEMGH----------EIDSINVSQ 340 (386)
T ss_dssp SCEEEETTTTEEEEEEEECC--TTCTTSCEEEEEEEETTTCCEEEE----------EEEEE----------EECEEEECS
T ss_pred ceeeECCCCCeEEEEecccc--ccccCCCCCEEEEEECCCCeEEEE----------EECCC----------CcceEEECC
Confidence 34677999999877654321 133332 46899999998775221 10000 134678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeec
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 443 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d 443 (771)
|++.++|.++ .....+..+|..++++.+-....+......+++|
T Consensus 341 D~~~~ly~tn-~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 341 DEKPLLYALS-TGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp SSSCEEEEEE-TTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCeEEEEEc-CCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 9985555554 3345688889999987765554443344556655
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-07 Score=95.67 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=107.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+....++++++.++++...+ ..+.+|+ .++..........+ ..+.|++++. +...+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~~~~~~~~~~~~~~v----------~~v~~~~~~~--~~~~~~~--- 120 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVK----EVVHIWDDVKKQDVSRIKVDAPV----------KDLFLSREFI--VVSYGDV--- 120 (355)
T ss_dssp CCCEEEECTTSSEEEEECSST----TEEEEEETTTTEEEEEEECSSCE----------EEEEECSSEE--EEEETTE---
T ss_pred CeEEEEEcCCCCEEEEEECCc----cEEEEEECCCCcEEEEEECCCce----------EEEEEcCCEE--EEEEcCE---
Confidence 366788999999998775432 2566773 33333333332222 5788888753 2222211
Q ss_pred CCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccC--CccCceEEEEEccCCc-----------------eeeccCCC
Q 004149 178 KPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYA--GKRQPSLFVININSGE-----------------VQAVKGIP 237 (771)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~--~~~~~~l~v~d~~~~~-----------------~~~l~~~~ 237 (771)
...|+.... ........ ..+...+++ ..... +.....|.+||+.+++ ...+ ..
T Consensus 121 i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~ 193 (355)
T 3vu4_A 121 ISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KA 193 (355)
T ss_dssp EEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE--CC
T ss_pred EEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--Ec
Confidence 112222111 01111100 001111222 11111 3456789999998875 4555 34
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce-eEEEecccccchhhhhhhhcCCCCCCc-ceecC-C
Q 004149 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDLP-VVNLT-E 314 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt-~ 314 (771)
....+..++|||||+. |+..+ .+.. |.++|+ .+++ ...+. .
T Consensus 194 h~~~v~~~~~s~~g~~----l~s~s---------------~d~~~v~iwd~-----------------~~~~~~~~~~~g 237 (355)
T 3vu4_A 194 HTNPIKMVRLNRKSDM----VATCS---------------QDGTIIRVFKT-----------------EDGVLVREFRRG 237 (355)
T ss_dssp CSSCEEEEEECTTSSE----EEEEE---------------TTCSEEEEEET-----------------TTCCEEEEEECT
T ss_pred cCCceEEEEECCCCCE----EEEEe---------------CCCCEEEEEEC-----------------CCCcEEEEEEcC
Confidence 5557889999999997 77665 2335 888887 5554 34454 2
Q ss_pred -CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 315 -SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 315 -~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
+...+.+.+|||||+.|+..+.+. .|.+||+..+.
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~-----------~v~iw~~~~~~ 273 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKW-----------TLHVFEIFNDQ 273 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTC-----------EEEEEESSCCS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCC-----------EEEEEEccCCC
Confidence 566789999999999998877653 48888886654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.6e-08 Score=105.73 Aligned_cols=164 Identities=9% Similarity=-0.054 Sum_probs=98.0
Q ss_pred ceEEEEEccCCcee------------eccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004149 218 PSLFVININSGEVQ------------AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 218 ~~l~v~d~~~~~~~------------~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
..|.+||+.+++.. .+ ......+..++|+|++ . |+..+ .+..|.++
T Consensus 235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~~-~----lasgs---------------~DgtV~lW 292 (524)
T 2j04_B 235 GTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSPT-T----VVCGF---------------KNGFVAEF 292 (524)
T ss_dssp SCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSSS-E----EEEEE---------------TTSEEEEE
T ss_pred CeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCCC-e----EEEEe---------------CCCEEEEE
Confidence 46778887765321 22 2234467789999864 4 66554 33478888
Q ss_pred ecccccchhhhhhhhcCCCCCCc--ceecCCCCccccce--eecCCC-CEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 286 RVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFP--RFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p--~~SpDG-~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
|+ .++. ...+..+...+.+. .|+||| +.|+..+.+. .|.+||+.+++
T Consensus 293 D~-----------------~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-----------tvklWD~~~~~ 344 (524)
T 2j04_B 293 DL-----------------TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-----------YFYIFNPKDIA 344 (524)
T ss_dssp ET-----------------TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS-----------EEEEECGGGHH
T ss_pred EC-----------------CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC-----------eEEEEECCCCC
Confidence 88 4332 23455666678887 689998 7777666553 58888887644
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE-EEecCCCCCceeeE
Q 004149 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSL 439 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~ 439 (771)
......+. .. ...+..++|+||++.+ +++..++...| +|+.++.. ..+......+....
T Consensus 345 ~~~~~~~~--------------~~---~~~v~~v~fsp~~~~l-~s~~~d~tv~l--wd~~~~~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 345 TTKTTVSR--------------FR---GSNLVPVVYCPQIYSY-IYSDGASSLRA--VPSRAAFAVHPLVSRETTITAIG 404 (524)
T ss_dssp HHCEEEEE--------------CS---CCSCCCEEEETTTTEE-EEECSSSEEEE--EETTCTTCCEEEEECSSCEEEEE
T ss_pred cccccccc--------------cc---cCcccceEeCCCcCeE-EEeCCCCcEEE--EECcccccceeeecCCCceEEEE
Confidence 31110000 00 0124568899999865 44444444444 57777664 44554444566678
Q ss_pred EeecCCEEEEEE
Q 004149 440 LTLDGDNIIAVS 451 (771)
Q Consensus 440 ~s~d~~~l~~~~ 451 (771)
|+|+++.|+..+
T Consensus 405 ~Sp~g~~l~Sgs 416 (524)
T 2j04_B 405 VSRLHPMVLAGS 416 (524)
T ss_dssp CCSSCCBCEEEE
T ss_pred eCCCCCeEEEEE
Confidence 888888665433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-07 Score=99.14 Aligned_cols=205 Identities=10% Similarity=0.070 Sum_probs=118.6
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEec--C---Cc-c--eEEEecCCcccccccCCCcccceeecCCCCeEEE
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--Q---SQ-L--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~--~---~~-~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~ 169 (771)
+.+...+||| ||++||..+..+ .+.+|+ . +. . ......... +.+++|+||++.|+.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVYSSSLTYDCSST----------VTQITMIPNFDAFAV 128 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCCSCSEEEECSSC----------EEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCc-----eEEEeECcccccCcccceeeeccCCCC----------EEEEEEeCCCCEEEE
Confidence 4588999999 999998876543 556662 2 21 1 111121222 369999999999888
Q ss_pred EecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc---CCceeecc---------CCC
Q 004149 170 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ---SGEVQAVK---------GIP 237 (771)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~---~~~~~~l~---------~~~ 237 (771)
.+.+ ..|.+||+. +++..... ..+
T Consensus 129 ~s~d--------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 129 SSKD--------------------------------------------GQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EETT--------------------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EeCC--------------------------------------------CEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 6543 567788773 44333220 001
Q ss_pred --CCCccceEE--EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceec
Q 004149 238 --KSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 312 (771)
Q Consensus 238 --~~~~~~~~~--wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l 312 (771)
....+..+. |+||++. |+..+ .+..|.++|+ .+++ ...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~ 208 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSL----LVALT---------------NLSRVIIFDI-----------------RTLERLQII 208 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEE----EEEEE---------------TTSEEEEEET-----------------TTCCEEEEE
T ss_pred cccccCceEEEEEEcCCCCE----EEEEe---------------CCCeEEEEeC-----------------CCCeeeEEE
Confidence 111222222 5667765 55554 3347899998 4554 3444
Q ss_pred CC--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC-c-cceeeEEecccccCCCCCccccc
Q 004149 313 TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-L-EKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 313 t~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
.. +...+....|+|||+.|+..+.+. .|.+||+.++..... . .....+..+
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~v~~~-------------- 263 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRG-----------IIDIWDIRFNVLIRSWSFGDHAPITHV-------------- 263 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTS-----------CEEEEETTTTEEEEEEBCTTCEEEEEE--------------
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCC-----------eEEEEEcCCccEEEEEecCCCCceEEE--------------
Confidence 44 456788999999999988777653 488999887553211 0 111011100
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 389 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 389 ~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
...+.|++|++.| ++...++ .|..+|+.+++....
T Consensus 264 --~~~~~~s~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 264 --EVCQFYGKNSVIV-VGGSSKT--FLTIWNFVKGHCQYA 298 (437)
T ss_dssp --EECTTTCTTEEEE-EEESTTE--EEEEEETTTTEEEEE
T ss_pred --EeccccCCCccEE-EEEcCCC--cEEEEEcCCCcEEEE
Confidence 0123677888644 4444444 466668877775443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-06 Score=89.96 Aligned_cols=252 Identities=9% Similarity=-0.025 Sum_probs=134.7
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
|..++||+.|.++... ...|+.++. .++ ...+.... ......+++|||+.++.. . +...+
T Consensus 33 ~~~d~~g~~l~~~~~~--------~~~i~~~~~--~~~-~~~~~~~~-----~~~~~l~~~~dg~l~v~~-~---~~~~i 92 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVR--------QNRTWAWSD--DGQ-LSPEMHPS-----HHQNGHCLNKQGHLIACS-H---GLRRL 92 (296)
T ss_dssp EEEEGGGTEEEEEEGG--------GTEEEEEET--TSC-EEEEESSC-----SSEEEEEECTTCCEEEEE-T---TTTEE
T ss_pred CeEeCCCCEEEEEeCC--------CCEEEEEEC--CCC-eEEEECCC-----CCcceeeECCCCcEEEEe-c---CCCeE
Confidence 3345677766665322 246777654 222 33332221 446778999999854332 2 22356
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC-CCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE-PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+.++ ..++.+.+........ ......+.++|||+ |++.... .... .+.
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~vtd~~~g~~~--~~~---------------------- 142 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKK-----LNSPNDVCLAPDGS-LWFSDPTYGIDK--PEE---------------------- 142 (296)
T ss_dssp EEECSTTCCEEEEECEETTEE-----CCCCCCEEECTTSC-EEEEECSHHHHC--GGG----------------------
T ss_pred EEEcCCCCcEEEEeeccCCCC-----CCCCCCEEECCCCC-EEEECCcccccc--ccc----------------------
Confidence 6666 3666554443211110 00124789999997 4442100 0000 000
Q ss_pred cCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 205 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
+...........||.++.+ ++.+.+ .........++|+|||+. | ++. .....|++
T Consensus 143 ---~~~~~~~~~~~~l~~~~~~-g~~~~~--~~~~~~~~gi~~s~dg~~----l-v~~--------------~~~~~i~~ 197 (296)
T 3e5z_A 143 ---GYGGEMELPGRWVFRLAPD-GTLSAP--IRDRVKPNGLAFLPSGNL----L-VSD--------------TGDNATHR 197 (296)
T ss_dssp ---SSCCCCCSSSCEEEEECTT-SCEEEE--ECCCSSEEEEEECTTSCE----E-EEE--------------TTTTEEEE
T ss_pred ---cccccccCCCcEEEEECCC-CCEEEe--ecCCCCCccEEECCCCCE----E-EEe--------------CCCCeEEE
Confidence 0000001123589999887 666666 333345678999999996 6 443 12347888
Q ss_pred EecccccchhhhhhhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 285 VRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
+++. ..+.. +.+...........+++||+ |+... . ..|+++|.++ +
T Consensus 198 ~~~~----------------~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~-----------~~v~~~~~~g-~ 247 (296)
T 3e5z_A 198 YCLN----------------ARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-G-----------DGVHVLTPDG-D 247 (296)
T ss_dssp EEEC----------------SSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-T-----------TEEEEECTTS-C
T ss_pred EEEC----------------CCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-C-----------CeEEEECCCC-C
Confidence 8872 13333 22222233456789999998 44333 2 2488888653 2
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCcc-ccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW-LSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.. ..+..+. .+..++| ++|++.|++++. ..||++++++++++.
T Consensus 248 ~~----------~~~~~~~----------~~~~~~f~~~d~~~L~v~t~----~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 248 EL----------GRVLTPQ----------TTSNLCFGGPEGRTLYMTVS----TEFWSIETNVRGLEH 291 (296)
T ss_dssp EE----------EEEECSS----------CCCEEEEESTTSCEEEEEET----TEEEEEECSCCBCCC
T ss_pred EE----------EEEECCC----------CceeEEEECCCCCEEEEEcC----CeEEEEEcccccccc
Confidence 11 0010000 1345678 689998887764 369999998887663
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.2e-06 Score=88.74 Aligned_cols=200 Identities=11% Similarity=-0.016 Sum_probs=99.4
Q ss_pred cCceEEEEEccCCceeeccCCCCC----CccceEEEecCCCCCccEEEEEeecCcc--eeeeeeeec---cCCceeEEEe
Q 004149 216 RQPSLFVININSGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSET--RKLGIKYCY---NRPCALYAVR 286 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~----~~~~~~~wspDg~~~~~~l~~~~~~~~~--~~~g~~~~~---~~~~~l~~~d 286 (771)
....|.++|.++.+++.- .+.. ...-++.|+||++ +++++.+..+ ++.|+.... ....+|..+|
T Consensus 162 ~~g~v~vlD~~T~~v~~~--~~~~~~~~~~~Yd~~~~p~~~-----~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGK--WEIDRGDQYLAYDFWWNLPNE-----VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp SCCEEEEECTTTCCEEEE--CCSBCTTCCCCCCEEEETTTT-----EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred CCCeEEEEECCCCeEEEE--EccCCCCccccceEEECCCCC-----EEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 457899999999887655 2211 1233588999999 4555543321 111211100 1345899999
Q ss_pred cccccchhhhhhhhcCCCCCCcc-eecCCC-C-ccccce--eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 287 VSLYKSEASELELKESSSEDLPV-VNLTES-I-SSAFFP--RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-~-~~~~~p--~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+ .+++. ..+.-. . ...... .|+|||++++....-.. ..-..+|+++..+.+..
T Consensus 235 ~-----------------~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-----~~Lss~V~v~~~d~g~~ 292 (462)
T 2ece_A 235 L-----------------RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL-----KDLSSSIWLWFYEDGKW 292 (462)
T ss_dssp T-----------------TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET-----TTCCEEEEEEEEETTEE
T ss_pred C-----------------CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec-----cCCCceEEEEEecCCce
Confidence 8 44432 233322 1 123333 45999997554443000 00124566655544321
Q ss_pred CCCccceeeEEecccccCCCCCcccc------cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC-CCcEE---EecCC
Q 004149 362 FSSLEKIVDVIPVVQCAEGDCFPGLY------SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS-SGELL---RITPA 431 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~------~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~-tg~~~---~l~~~ 431 (771)
. ...++++-...-.+..|.+. ......+.+|+||++||++....+. |..+++. .++.+ ++...
T Consensus 293 ~-----~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~--VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 293 N-----AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE--VRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp E-----EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE--EEEEECSSTTSCEEEEEEECB
T ss_pred e-----EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE--EEEEEecCCCCcEEEEEEEeC
Confidence 1 01111111100001111000 1234677899999998877654454 4444542 33322 22222
Q ss_pred C--------------CCceeeEEeecCCEEEEEE
Q 004149 432 E--------------SNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 432 ~--------------~~~~~~~~s~d~~~l~~~~ 451 (771)
. +......+|+||++|+++.
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 0134568899999988776
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7e-09 Score=110.38 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=80.2
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCc---EEEEECCCCCCCCChhh-------------hh------------
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEA-------------LQ------------ 586 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~---~V~~~d~rG~~~~g~~~-------------~~------------ 586 (771)
...|+||++||.+.+ ...|...+..|+++|| .|+++|++| +|.+. ..
T Consensus 20 ~~~ppVVLlHG~g~s--~~~w~~la~~La~~Gy~~~~Via~DlpG---~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~ 94 (484)
T 2zyr_A 20 EDFRPVVFVHGLAGS--AGQFESQGMRFAANGYPAEYVKTFEYDT---ISWALVVETDMLFSGLGSEFGLNISQIIDPET 94 (484)
T ss_dssp -CCCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEEECCCH---HHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHH
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHHHHHcCCCcceEEEEECCC---CCcccccccccccccccccccccccccccccc
Confidence 345779999997665 4578889999999999 799999998 44320 00
Q ss_pred ---cCCC---CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCccc
Q 004149 587 ---SLPG---KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 652 (771)
Q Consensus 587 ---~~~~---~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~ 652 (771)
.... .......+++.+.++.+.++. +.+++.|+||||||.+++.++.++| +.++++|+.+|..+
T Consensus 95 l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 95 LDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred ccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0000 011123567777777777653 3478999999999999999999987 48999999988653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-06 Score=93.14 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=51.5
Q ss_pred eeecCCCCEEEEEecCCCCCCCCcc-ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 322 PRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
..++|||++|+...... ..|.|. ....|.++|+.+.+... .+.... ....+.|+|||
T Consensus 324 va~s~dg~rlyVa~~~~--~~gthk~~s~~VsVID~~T~kvv~----------~I~vg~----------~P~gia~spDg 381 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQR--DEWKHKAASRFVVVLNAETGERIN----------KIELGH----------EIDSINVSQDA 381 (426)
T ss_dssp EEEEGGGTEEEEEEEEC--CTTCTTSCEEEEEEEETTTCCEEE----------EEEEEE----------EECEEEECCSS
T ss_pred eEEcCCCCEEEEEeccc--ccccccCCCCEEEEEECCCCeEEE----------EEECCC----------CcCeEEEccCC
Confidence 58999999876654321 012221 23579999998866421 111100 13467899999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 401 CTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
+.++|+.++ ....|..||+.++++.+-
T Consensus 382 ~~~lyv~n~-~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 382 EPLLYALSA-GTQTLHIYDAATGEELRS 408 (426)
T ss_dssp SCEEEEEET-TTTEEEEEETTTCCEEEE
T ss_pred CEEEEEEcC-CCCeEEEEECCCCCEEEE
Confidence 944455543 245688889999987754
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.4e-09 Score=110.55 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=76.7
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||..... ...|.. .+..| +..+|.|+++|++|.+. +...... .......+++.+.++++.++..
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~---s~y~~~~-~~~~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSR---TAYSQAS-QNVRIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHS---SCHHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccC---CccHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999966542 234655 44554 56799999999998432 2110000 0000113466677777764433
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.+++.|+||||||.+|+.++.++|++++.+++..|..
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 567899999999999999999999999999999887754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=109.55 Aligned_cols=201 Identities=12% Similarity=0.053 Sum_probs=126.3
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+++|||||+.||..+. +..|++|+..+++....
T Consensus 21 ~~lafspdg~~lAsgs~--------------------------------------------Dg~I~lw~~~~~~~~~~-- 54 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATV--------------------------------------------TGEVHIYGQQQVEVVIK-- 54 (902)
T ss_dssp EEEEEETTTTEEEEEET--------------------------------------------TSEEEEECSTTCEEEEE--
T ss_pred EEEEECCCCCEEEEEeC--------------------------------------------CCEEEEEeCCCcEEEEE--
Confidence 69999999999988643 25788999888776555
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~ 314 (771)
......+..++|+| |+. |+..+ .+..|.++|+ .+++. ..+.
T Consensus 55 ~~~~~~V~~l~fsp-g~~----L~S~s---------------~D~~v~lWd~-----------------~~~~~~~~~~- 96 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIY----LVVIN---------------AKDTVYVLSL-----------------YSQKVLTTVF- 96 (902)
T ss_dssp CSSCCCEEEEEEET-TTE----EEEEE---------------TTCEEEEEET-----------------TTCSEEEEEE-
T ss_pred cCCCCCEEEEEEcC-CCE----EEEEE---------------CcCeEEEEEC-----------------CCCcEEEEEc-
Confidence 44455788999999 776 77665 3347888898 55543 3333
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
....+....|+|||++|+..+.+. .|.+||+.++..... .++.+.... ..+. .+...+..+
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg-----------~V~lwd~~~~~~~~~------~i~~~~~~~-~~~~-~h~~~V~sl 157 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNG-----------SMIVYDIDRDQLSSF------KLDNLQKSS-FFPA-ARLSPIVSI 157 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTS-----------CEEEEETTTTEEEEE------EECCHHHHH-TCSS-SCCCCCCEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCC-----------cEEEEECCCCccccc------eeccccccc-cccc-cCCCCeEEE
Confidence 445688999999999988776553 488999887543100 000000000 0000 011246688
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-------------------CCceeeEEeecCCEEEEEEeCCC
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-------------------SNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-------------------~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
+|+|++..++++...++. + .+|+.+++..+..... ..+....|+|+|+.|+....+.
T Consensus 158 ~~sp~~~~~l~~g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg- 233 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN- 233 (902)
T ss_dssp EEETTEEEEEEEECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC-
T ss_pred EEccCCCCEEEEEeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC-
Confidence 999976555566655554 4 5588887755433221 2345578899988776655432
Q ss_pred CCCeEEEEEec
Q 004149 456 DVPQVKYGYFV 466 (771)
Q Consensus 456 ~p~~l~~~~~~ 466 (771)
.|.+.++.
T Consensus 234 ---~i~lWd~~ 241 (902)
T 2oaj_A 234 ---SLVFWDAN 241 (902)
T ss_dssp ---CEEEEETT
T ss_pred ---eEEEEECC
Confidence 35555543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.2e-07 Score=99.30 Aligned_cols=240 Identities=9% Similarity=-0.019 Sum_probs=141.0
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.+.|+.|...++|+.+.. ...+.+++ ..++....+......| ++.+||||++|+... .
T Consensus 158 ~~~~~~d~~~~~~V~~~~--~~~V~viD~~t~~v~~~i~~g~~p~----------~v~~SpDGr~lyv~~-~-------- 216 (567)
T 1qks_A 158 QQMNDWDLENLFSVTLRD--AGQIALIDGSTYEIKTVLDTGYAVH----------ISRLSASGRYLFVIG-R-------- 216 (567)
T ss_dssp SCCSCCCGGGEEEEEETT--TTEEEEEETTTCCEEEEEECSSCEE----------EEEECTTSCEEEEEE-T--------
T ss_pred ccccccCCCceEEEEeCC--CCeEEEEECCCCeEEEEEeCCCCcc----------ceEECCCCCEEEEEc-C--------
Confidence 466788877777887753 44677777 5555555555544443 889999999776542 1
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc--CCceeeccCCCCCCccceEEEe----cCCCCCc
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGEVQAVKGIPKSLSVGQVVWA----PLNEGLH 255 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~~~~~~l~~~~~~~~~~~~~ws----pDg~~~~ 255 (771)
...|.++|+. ++++..- ++.......+++| |||++
T Consensus 217 -----------------------------------dg~V~viD~~~~t~~~v~~--i~~G~~P~~ia~s~~~~pDGk~-- 257 (567)
T 1qks_A 217 -----------------------------------DGKVNMIDLWMKEPTTVAE--IKIGSEARSIETSKMEGWEDKY-- 257 (567)
T ss_dssp -----------------------------------TSEEEEEETTSSSCCEEEE--EECCSEEEEEEECCSTTCTTTE--
T ss_pred -----------------------------------CCeEEEEECCCCCCcEeEE--EecCCCCceeEEccccCCCCCE--
Confidence 2479999995 5554332 2333456788999 79996
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-cCCC-----------Ccccccee
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTES-----------ISSAFFPR 323 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-lt~~-----------~~~~~~p~ 323 (771)
++... .. ...|.++|. .+.+... +... ...+....
T Consensus 258 --l~v~n-~~-------------~~~v~ViD~-----------------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 258 --AIAGA-YW-------------PPQYVIMDG-----------------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp --EEEEE-EE-------------TTEEEEEET-----------------TTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred --EEEEE-cc-------------CCeEEEEEC-----------------CCCcEEEEEeccccccccccccCCCceEEEE
Confidence 55544 21 236778886 4444322 2111 11244567
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l 403 (771)
.|+++..+++...+ ..+|+++|..+.+...+ .. +. .+.|+ ....|+|||+++
T Consensus 305 ~s~~~~~~vv~~~~----------~g~v~~vd~~~~~~~~v-------~~-i~---~~~~~-------~d~~~~pdgr~~ 356 (567)
T 1qks_A 305 ASHYRPEFIVNVKE----------TGKILLVDYTDLNNLKT-------TE-IS---AERFL-------HDGGLDGSHRYF 356 (567)
T ss_dssp ECSSSSEEEEEETT----------TTEEEEEETTCSSEEEE-------EE-EE---CCSSE-------EEEEECTTSCEE
T ss_pred EcCCCCEEEEEecC----------CCeEEEEecCCCcccee-------ee-ee---ccccc-------cCceECCCCCEE
Confidence 78998876655533 25799999765432111 11 00 11221 245799999988
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCC-CC-Cc--eee-EEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 404 LLSSIWGSSQVIISVNVSSGELLRITPA-ES-NF--SWS-LLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~-~~--~~~-~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
+.+... ...|..+|++++++...... .. .+ ... .+.++++.++++..-. ...|.+++..+
T Consensus 357 ~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~ 421 (567)
T 1qks_A 357 ITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDP 421 (567)
T ss_dssp EEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCT
T ss_pred EEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCC
Confidence 776643 34577799999987755433 11 11 122 3567777776655322 23467766544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-06 Score=88.62 Aligned_cols=236 Identities=7% Similarity=-0.020 Sum_probs=126.1
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCccccccc
Q 004149 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVY 150 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 150 (771)
..|+.++. .++..+++.... .......+++|||+.++...........++.++ .++....+.... ..
T Consensus 66 ~~i~~~d~--~~~~~~~~~~~~----~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~----- 133 (333)
T 2dg1_A 66 GNIFKINP--ETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-ST----- 133 (333)
T ss_dssp CEEEEECT--TTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-SS-----
T ss_pred CEEEEEeC--CCCcEEEEeeCC----CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-cc-----
Confidence 46777654 333444433211 144778899999985544332211224677777 444444333211 10
Q ss_pred CCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce
Q 004149 151 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 230 (771)
Q Consensus 151 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~ 230 (771)
......+.++|||+ |++....... ......||++|.++++.
T Consensus 134 -~~~~~~i~~d~~g~-l~v~~~~~~~-------------------------------------~~~~~~l~~~~~~~~~~ 174 (333)
T 2dg1_A 134 -AYCIDDMVFDSKGG-FYFTDFRGYS-------------------------------------TNPLGGVYYVSPDFRTV 174 (333)
T ss_dssp -CCCEEEEEECTTSC-EEEEECCCBT-------------------------------------TBCCEEEEEECTTSCCE
T ss_pred -CCcccceEECCCCC-EEEEeccccc-------------------------------------cCCCceEEEEeCCCCEE
Confidence 11225789999996 4443221100 01236799999888777
Q ss_pred eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-c
Q 004149 231 QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-V 309 (771)
Q Consensus 231 ~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~ 309 (771)
+.+ ......+..++|+|||+. |++... ....|+++++. ..+. .
T Consensus 175 ~~~--~~~~~~~~~i~~~~dg~~----l~v~~~--------------~~~~i~~~d~~----------------~~g~~~ 218 (333)
T 2dg1_A 175 TPI--IQNISVANGIALSTDEKV----LWVTET--------------TANRLHRIALE----------------DDGVTI 218 (333)
T ss_dssp EEE--EEEESSEEEEEECTTSSE----EEEEEG--------------GGTEEEEEEEC----------------TTSSSE
T ss_pred EEe--ecCCCcccceEECCCCCE----EEEEeC--------------CCCeEEEEEec----------------CCCcCc
Confidence 766 222234567899999997 766541 12368888872 1121 1
Q ss_pred eec-----C--CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCC--
Q 004149 310 VNL-----T--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG-- 380 (771)
Q Consensus 310 ~~l-----t--~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-- 380 (771)
..+ . ..........+++||+ |+..... ...|+++|.++ +.. ..+..+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~----------~~~v~~~d~~g-~~~----------~~~~~~~~~~ 276 (333)
T 2dg1_A 219 QPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYG----------QGRVLVFNKRG-YPI----------GQILIPGRDE 276 (333)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEET----------TTEEEEECTTS-CEE----------EEEECTTGGG
T ss_pred ccccceEEEecCCCCCCCceEECCCCC-EEEEEcC----------CCEEEEECCCC-CEE----------EEEEcCCCcc
Confidence 111 0 1113456688999998 3333222 13588888643 211 00100000
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEeeeC---CeeEEEEEECC
Q 004149 381 DCFPGLYSSSILSNPWLSDGCTMLLSSIWG---SSQVIISVNVS 421 (771)
Q Consensus 381 ~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~---~~~~l~~~d~~ 421 (771)
+.+ ..+..++|++|++.|++++..+ ....||++++.
T Consensus 277 g~~-----~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 277 GHM-----LRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TCS-----CBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred ccc-----cCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 000 0245678999998888877643 34578888864
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-08 Score=109.85 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||..... ...|.. .+..|.+ .+|.|+++|++|.+... ..... .......+++.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~--~~~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAA--NNVRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999966542 224554 3445544 58999999999832211 00000 0001124566677777764333
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.+++.|+||||||.+|+.++.++|+ ++.+++..|..
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 567899999999999999999999999 99999887754
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=8.6e-06 Score=81.65 Aligned_cols=204 Identities=10% Similarity=0.123 Sum_probs=123.1
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
....++|+|+++.|.++.. ....++.+. +++....+.... ... .+++++|++..|++...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~---~~~~I~~~~~~g~~~~~~~~~~~~~p----------~~ia~d~~~~~lyv~d~----- 98 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQDLGSP----------EGIALDHLGRTIFWTDS----- 98 (267)
T ss_dssp EEEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECTTCCCE----------EEEEEETTTTEEEEEET-----
T ss_pred cEEEEEEecCCCEEEEEEC---CCCEEEEEecCCCCcEEEEECCCCCc----------cEEEEEecCCeEEEEEC-----
Confidence 3567899999988866533 234677777 444333333221 122 48899999887766522
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~ 256 (771)
....|+++++++...+.+ .... ..+..++++|++..
T Consensus 99 --------------------------------------~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~--- 135 (267)
T 1npe_A 99 --------------------------------------QLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGN--- 135 (267)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTE---
T ss_pred --------------------------------------CCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCE---
Confidence 225788899887655555 2222 35678899998876
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+++.+.. ....|+++++ ++...+.+. .........+++|||++|++..
T Consensus 136 -lyv~~~~~------------~~~~I~~~~~-----------------dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 136 -LYWTDWNR------------DNPKIETSHM-----------------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp -EEEEECCS------------SSCEEEEEET-----------------TSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEECCC------------CCcEEEEEec-----------------CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 66654210 1247888887 444333332 2333467789999999998877
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
... ..|+++|..+..... +.. ....| .. ...|+..||++.. +...|
T Consensus 186 ~~~----------~~I~~~~~~g~~~~~-------~~~------~~~~P-------~g--i~~d~~~lyva~~--~~~~v 231 (267)
T 1npe_A 186 AGT----------HRAECLNPAQPGRRK-------VLE------GLQYP-------FA--VTSYGKNLYYTDW--KTNSV 231 (267)
T ss_dssp TTT----------TEEEEEETTEEEEEE-------EEE------CCCSE-------EE--EEEETTEEEEEET--TTTEE
T ss_pred CCC----------CEEEEEecCCCceEE-------Eec------CCCCc-------eE--EEEeCCEEEEEEC--CCCeE
Confidence 542 469999986532111 111 01111 12 2356677877543 33468
Q ss_pred EEEECCCCcEEEe
Q 004149 416 ISVNVSSGELLRI 428 (771)
Q Consensus 416 ~~~d~~tg~~~~l 428 (771)
++++.++|+....
T Consensus 232 ~~~d~~~g~~~~~ 244 (267)
T 1npe_A 232 IAMDLAISKEMDT 244 (267)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCCceEE
Confidence 9999988875543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-06 Score=89.37 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=70.3
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCC-CCcccccCCCCCCccccCCCE
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD-CFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~g~~~~~~~~~~~s~dg~~ 402 (771)
.+++++.++|.+. . .++++|+.++... +...+...... .-.+........+.+++||++
T Consensus 218 ~~~~~~~~~~vs~-~-----------~V~viD~~~~~~~--------v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 218 QANYPGMLVWAVA-S-----------SILQGDIPAAGAT--------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp EETTTTEEEECBS-S-----------CCEEEECCSSCCE--------EECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred ccccCCEEEEEcC-C-----------EEEEEECCCCcce--------EEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 3889999999886 3 3888888654321 11111000000 000000012223579999999
Q ss_pred EEEEeeeC-C-----eeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 403 MLLSSIWG-S-----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 403 l~~~~~~~-~-----~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+|++.... + ...+..||++++++..-...........+++||+.++++.... .-.|.++|+.+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~--~~~VsVID~~t~ 347 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG--TEVLDIYDAASD 347 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEESSSC
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC--CCeEEEEECCCC
Confidence 98875522 2 2345589999987654332222234568899999888777621 245888887544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-06 Score=96.33 Aligned_cols=273 Identities=8% Similarity=-0.015 Sum_probs=149.8
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
.++++|+.|+..+..+ .+.+|+....+.+..+. +..+. +..+.|+||+ .|+..+.+.... .|+..
T Consensus 127 ~~~~~~~~l~sgs~dg-----~i~vwd~~~~~~~~~~~-~h~~~------V~~l~~~~~~-~l~s~s~dg~i~--vwd~~ 191 (464)
T 3v7d_B 127 CLQFEDNYVITGADDK-----MIRVYDSINKKFLLQLS-GHDGG------VWALKYAHGG-ILVSGSTDRTVR--VWDIK 191 (464)
T ss_dssp EEEEETTEEEEEETTS-----CEEEEETTTTEEEEEEC-CCSSC------EEEEEECSTT-EEEEEETTSCEE--EEETT
T ss_pred EEEECCCEEEEEcCCC-----cEEEEECCCCcEEEEEe-CCCcC------EEEEEEcCCC-EEEEEeCCCCEE--EEECC
Confidence 4556788887765543 45566322222222221 11122 2689999999 677766655432 33332
Q ss_pred CCCCCCCCccCCCCCCccccc--CCcCcccCCccCceEEEEEccCCceeeccCCC--------------------CCCcc
Q 004149 185 STKGGSSDKDCNSWKGQGDWE--EDWGETYAGKRQPSLFVININSGEVQAVKGIP--------------------KSLSV 242 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~--~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~--------------------~~~~~ 242 (771)
..........+........|. ++....+++.....|.+||+.++......... .....
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 221111122222233333444 34344556667789999999877533210000 00111
Q ss_pred ceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccc
Q 004149 243 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFF 321 (771)
Q Consensus 243 ~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~ 321 (771)
.-..++++++. |+..+ .+..|.++|+ .+++ ...+..+...+..
T Consensus 272 ~v~~~~~~~~~----l~~~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~v~~ 315 (464)
T 3v7d_B 272 SVRTVSGHGNI----VVSGS---------------YDNTLIVWDV-----------------AQMKCLYILSGHTDRIYS 315 (464)
T ss_dssp CEEEEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEE
T ss_pred eEEEEcCCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCEEE
Confidence 12345788876 66554 3347888898 4444 4556666777889
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004149 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~ 401 (771)
..|+|||+.|+..+.+. .|.+||+.+++........ ...+..+.|+ ++
T Consensus 316 ~~~~~~~~~l~sg~~dg-----------~i~vwd~~~~~~~~~~~~h-------------------~~~v~~~~~~--~~ 363 (464)
T 3v7d_B 316 TIYDHERKRCISASMDT-----------TIRIWDLENGELMYTLQGH-------------------TALVGLLRLS--DK 363 (464)
T ss_dssp EEEETTTTEEEEEETTS-----------CEEEEETTTTEEEEEECCC-------------------SSCEEEEEEC--SS
T ss_pred EEEcCCCCEEEEEeCCC-----------cEEEEECCCCcEEEEEeCC-------------------CCcEEEEEEc--CC
Confidence 99999999988776553 4889998876532111100 0123344565 45
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 402 TMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
. +++...++...+ +|+.+++...............++++++.++... . ..+.+.++.++
T Consensus 364 ~-l~s~s~dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d----g~i~iwd~~~g 422 (464)
T 3v7d_B 364 F-LVSAAADGSIRG--WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E----NQFNIYNLRSG 422 (464)
T ss_dssp E-EEEEETTSEEEE--EETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T----TEEEEEETTTC
T ss_pred E-EEEEeCCCcEEE--EECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C----CeEEEEECCCC
Confidence 4 455555655444 5777766554443333445568899988666544 2 36777776654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-06 Score=88.87 Aligned_cols=156 Identities=11% Similarity=0.032 Sum_probs=96.9
Q ss_pred ccceEEEeCC--CCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 99 TGASAVVPSP--SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SP--dG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
..+...+|+| +|++++..+..+ .+.+| ..++..++...... ..+.+++|+|||+.|+..+.
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~~--------~~i~~~~~~pdg~~lasg~~-- 190 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSAKSD--------VEYSSGVLHKDSLLLALYSP-- 190 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECCCSS--------CCCCEEEECTTSCEEEEECT--
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEecCCC--------CceEEEEECCCCCEEEEEcC--
Confidence 3478899999 999998776543 34555 23333332222111 11368999999998887532
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee--eccCCCCCCccceEEEecCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~--~l~~~~~~~~~~~~~wspDg~ 252 (771)
...|.+||+.+++.. .+. ......+..+.|+|||+
T Consensus 191 ------------------------------------------dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 191 ------------------------------------------DGILDVYNLSSPDQASSRFP-VDEEAKIKEVKFADNGY 227 (343)
T ss_dssp ------------------------------------------TSCEEEEESSCTTSCCEECC-CCTTSCEEEEEECTTSS
T ss_pred ------------------------------------------CCEEEEEECCCCCCCccEEe-ccCCCCEEEEEEeCCCC
Confidence 368999999988764 442 11456788999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC---CCcccc--ceeecC
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE---SISSAF--FPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~---~~~~~~--~p~~Sp 326 (771)
. |+..+ .. .|.++|+ ..++. ..+.. +..... ...|+|
T Consensus 228 ~----l~s~~---------------~~-~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 228 W----MVVEC---------------DQ-TVVCFDL-----------------RKDVGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp E----EEEEE---------------SS-BEEEEET-----------------TSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred E----EEEEe---------------CC-eEEEEEc-----------------CCCCcceeecccccccccccceEEEECC
Confidence 7 77665 11 6888887 33332 22221 122222 499999
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
||++|+..+..+ ..|.+|++..+
T Consensus 271 ~g~~l~~~s~~d----------~~i~v~~~~~~ 293 (343)
T 3lrv_A 271 SGKNMIAYSNES----------NSLTIYKFDKK 293 (343)
T ss_dssp TSSEEEEEETTT----------TEEEEEEECTT
T ss_pred CCCEEEEecCCC----------CcEEEEEEccc
Confidence 999998766522 24667776543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-06 Score=89.31 Aligned_cols=252 Identities=7% Similarity=-0.085 Sum_probs=131.9
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
-|.+++||+.|.++... ...++.++. . +....+.... ......+++|||+.++. .. +...
T Consensus 49 gp~~~~~g~~l~~~d~~--------~~~i~~~~~--~-g~~~~~~~~~-----~~~~gl~~d~dG~l~v~-~~---~~~~ 108 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLV--------GRRVLGWRE--D-GTVDVLLDAT-----AFTNGNAVDAQQRLVHC-EH---GRRA 108 (305)
T ss_dssp EEEEEGGGTEEEEEETT--------TTEEEEEET--T-SCEEEEEESC-----SCEEEEEECTTSCEEEE-ET---TTTE
T ss_pred CCeEeCCCCEEEEEECC--------CCEEEEEeC--C-CCEEEEeCCC-----CccceeeECCCCCEEEE-EC---CCCE
Confidence 34556788888876422 235666543 2 2333333222 44677899999985433 22 2235
Q ss_pred EEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 126 QFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
++.+...+..+.+........ ......+.++|||+ |++. +........ +.
T Consensus 109 v~~~~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~dG~-l~~t-d~~~g~~~~-----------------------~~ 158 (305)
T 3dr2_A 109 ITRSDADGQAHLLVGRYAGKR-----LNSPNDLIVARDGA-IWFT-DPPFGLRKP-----------------------SQ 158 (305)
T ss_dssp EEEECTTSCEEEEECEETTEE-----CSCCCCEEECTTSC-EEEE-CCSGGGSCG-----------------------GG
T ss_pred EEEECCCCCEEEEEeccCCCc-----cCCCCCEEECCCCC-EEEe-CcCCCcccc-----------------------cc
Confidence 666664455444433211110 00124789999997 5443 110000000 00
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004149 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
.... ........||.+|.++++.+.+ . .......++|+|||+. |+++..... .+....|+++
T Consensus 159 ~~~~--~~~~~~~~v~~~d~~~g~~~~~--~-~~~~p~gl~~spdg~~----lyv~~~~~~---------~~~~~~i~~~ 220 (305)
T 3dr2_A 159 GCPA--DPELAHHSVYRLPPDGSPLQRM--A-DLDHPNGLAFSPDEQT----LYVSQTPEQ---------GHGSVEITAF 220 (305)
T ss_dssp SCCC--CCSSSCEEEEEECSSSCCCEEE--E-EESSEEEEEECTTSSE----EEEEECCC------------CCCEEEEE
T ss_pred cccc--ccccCCCeEEEEcCCCCcEEEE--e-cCCCCcceEEcCCCCE----EEEEecCCc---------CCCCCEEEEE
Confidence 0000 0011236899999988888777 3 3334567899999997 766542110 0012478888
Q ss_pred ecccccchhhhhhhhcCCCCCCcc---eec-CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 286 RVSLYKSEASELELKESSSEDLPV---VNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~---~~l-t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
++. ++.. +.+ ....+......+++||+ | |++... .|++++.++...
T Consensus 221 ~~~-----------------~~~l~~~~~~~~~~~~~pdgi~~d~~G~-l-wv~~~~-----------gv~~~~~~g~~~ 270 (305)
T 3dr2_A 221 AWR-----------------DGALHDRRHFASVPDGLPDGFCVDRGGW-L-WSSSGT-----------GVCVFDSDGQLL 270 (305)
T ss_dssp EEE-----------------TTEEEEEEEEECCSSSCCCSEEECTTSC-E-EECCSS-----------EEEEECTTSCEE
T ss_pred Eec-----------------CCCccCCeEEEECCCCCCCeEEECCCCC-E-EEecCC-----------cEEEECCCCCEE
Confidence 872 2111 111 11233455678899998 4 444321 388888643211
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
.. +..+ ..+..++|++|++.|++++. ..||++++
T Consensus 271 ~~-----------~~~~----------~~~~~~~f~~d~~~L~it~~----~~l~~~~~ 304 (305)
T 3dr2_A 271 GH-----------IPTP----------GTASNCTFDQAQQRLFITGG----PCLWMLPL 304 (305)
T ss_dssp EE-----------EECS----------SCCCEEEECTTSCEEEEEET----TEEEEEEC
T ss_pred EE-----------EECC----------CceeEEEEeCCCCEEEEEcC----CeEEEEEC
Confidence 11 1110 02456788999998887764 26887765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-06 Score=90.07 Aligned_cols=189 Identities=13% Similarity=-0.026 Sum_probs=105.8
Q ss_pred ceEEEEEccCCceeeccCCCCC----CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 218 PSLFVININSGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~----~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|+++|+.++++......... ..+..+++ ++++ |+...+. ....|+++|+
T Consensus 105 ~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~----lyv~~~~-------------~~~~v~viD~------ 159 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKY----VYVNCWS-------------YQNRILKIDT------ 159 (328)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTE----EEEEECT-------------TCCEEEEEET------
T ss_pred CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCE----EEEEcCC-------------CCCEEEEEEC------
Confidence 6899999999887543101110 14456666 5554 5544321 1237999998
Q ss_pred hhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 294 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
.+++...............++|||+ +++.................|+++|..+++.. .
T Consensus 160 -----------~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----------~ 217 (328)
T 3dsm_A 160 -----------ETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----------K 217 (328)
T ss_dssp -----------TTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----------E
T ss_pred -----------CCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEE----------E
Confidence 5555433222233456788999998 55555432100000001257999998775531 1
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe--cCC-CCCceeeEEeecCCEEEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI--TPA-ESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l--~~~-~~~~~~~~~s~d~~~l~~~ 450 (771)
.+..+. + .....++|+||+++||++.. .++.+|.+++++... ... ........++|+++.|+.+
T Consensus 218 ~~~~~~-g-------~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 218 QFKFKL-G-------DWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp EEECCT-T-------CCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred EEecCC-C-------CCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 111100 0 12346789999998877643 789999998886421 111 1223445677777777766
Q ss_pred E-eCCCCCCeEEEEEec
Q 004149 451 S-SSPVDVPQVKYGYFV 466 (771)
Q Consensus 451 ~-s~~~~p~~l~~~~~~ 466 (771)
. .+......|++++..
T Consensus 285 ~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp ECTTSSSEEEEEEECTT
T ss_pred cccccccCCEEEEECCC
Confidence 5 222345667777654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=4.6e-06 Score=83.69 Aligned_cols=179 Identities=8% Similarity=-0.047 Sum_probs=108.7
Q ss_pred ceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|++++++++..+.+ .... ..+..++++|+++. |+++.. ....|+++++
T Consensus 58 ~~I~~~~~~g~~~~~~--~~~~~~~p~~ia~d~~~~~----lyv~d~--------------~~~~I~~~~~--------- 108 (267)
T 1npe_A 58 PSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM--------- 108 (267)
T ss_dssp TEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CEEEEEecCCCCcEEE--EECCCCCccEEEEEecCCe----EEEEEC--------------CCCEEEEEEc---------
Confidence 6899999988766555 2222 35678899998876 666541 2237899987
Q ss_pred hhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++...+.+.. ........+++|++..|++..... ....|+++++++...+.+ ..
T Consensus 109 --------~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~--------~~~~I~~~~~dg~~~~~~-------~~-- 163 (267)
T 1npe_A 109 --------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRIL-------AQ-- 163 (267)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEE-------EC--
T ss_pred --------CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC--------CCcEEEEEecCCCCcEEE-------EE--
Confidence 4443333332 223466789999988888876431 124688888765332111 00
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
. ... ....+++++|++.||++.. +...|++++++++..+.+..... .-..++.+++.|+++....
T Consensus 164 -~--~~~-------~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d~~~lyva~~~~- 228 (267)
T 1npe_A 164 -D--NLG-------LPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSYGKNLYYTDWKT- 228 (267)
T ss_dssp -T--TCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCC--SEEEEEEETTEEEEEETTT-
T ss_pred -C--CCC-------CCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCC--CceEEEEeCCEEEEEECCC-
Confidence 0 001 2346789999988887754 33578889987666555543222 1124566778877765432
Q ss_pred CCCeEEEEEecc
Q 004149 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
.+|++++..+
T Consensus 229 --~~v~~~d~~~ 238 (267)
T 1npe_A 229 --NSVIAMDLAI 238 (267)
T ss_dssp --TEEEEEETTT
T ss_pred --CeEEEEeCCC
Confidence 3577776543
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.1e-08 Score=98.47 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||.+++ ...|...+..|. +.|+++|+++... ...++++.+.+..++... ...
T Consensus 23 ~~~~l~~~hg~~~~--~~~~~~~~~~L~---~~v~~~d~~~~~~--------------~~~~~~~a~~~~~~i~~~-~~~ 82 (283)
T 3tjm_A 23 SERPLFLVHPIEGS--TTVFHSLASRLS---IPTYGLQCTRAAP--------------LDSIHSLAAYYIDCIRQV-QPE 82 (283)
T ss_dssp SSCCEEEECCTTCC--SGGGHHHHHHCS---SCEEEECCCTTSC--------------CSCHHHHHHHHHHHHTTT-CCS
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHhcC---ceEEEEecCCCCC--------------CCCHHHHHHHHHHHHHHh-CCC
Confidence 45678999997665 456777777774 9999999965211 123445444433333331 123
Q ss_pred CeEEEEEcChhHHHHHHHHHhC---CCcee---EEEecCCcc
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQA---PDKFV---AAAARNPLC 651 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~---p~~~~---a~v~~~p~~ 651 (771)
+++.|+||||||.+++.++.+. |+.+. .+++.++..
T Consensus 83 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~~ 124 (283)
T 3tjm_A 83 GPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSP 124 (283)
T ss_dssp SCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCCT
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCCc
Confidence 6899999999999999998865 77787 888877643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.3e-06 Score=84.57 Aligned_cols=150 Identities=9% Similarity=0.094 Sum_probs=89.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.++|++++++... ++....+..+.++|||+ ++++++...... .+ ......|+++|.
T Consensus 152 ~~v~viD~~t~~~~~~--i~~g~~p~~i~~~~dG~-----l~v~~~~~~~~~---~~-~~~~~~v~~id~---------- 210 (328)
T 3dsm_A 152 NRILKIDTETDKVVDE--LTIGIQPTSLVMDKYNK-----MWTITDGGYEGS---PY-GYEAPSLYRIDA---------- 210 (328)
T ss_dssp CEEEEEETTTTEEEEE--EECSSCBCCCEECTTSE-----EEEEBCCBCTTC---SS-CBCCCEEEEEET----------
T ss_pred CEEEEEECCCCeEEEE--EEcCCCccceEEcCCCC-----EEEEECCCccCC---cc-ccCCceEEEEEC----------
Confidence 6899999999886554 33334566788999997 666653221000 00 001247999997
Q ss_pred hhhcCCCCCCcce-ecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 298 ELKESSSEDLPVV-NLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~-~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
.+++.. .+.-. .......+|||||++|++... .|+++|..+++...... .
T Consensus 211 -------~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-------------~v~~~d~~t~~~~~~~~--------~ 262 (328)
T 3dsm_A 211 -------ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-------------DIWRMPVEADRVPVRPF--------L 262 (328)
T ss_dssp -------TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-------------SEEEEETTCSSCCSSCS--------B
T ss_pred -------CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-------------EEEEEECCCCceeeeee--------e
Confidence 656543 33221 235678999999998876432 48999988766421100 0
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECCCCcEE
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELL 426 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~--~~~~~l~~~d~~tg~~~ 426 (771)
.. .. ..+..++++|++..|+++... .....|+++|.+ |++.
T Consensus 263 ~~--~~-------~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 263 EF--RD-------TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp CC--CS-------SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred cC--CC-------CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 00 00 123456789977778776521 345678888987 5543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.5e-06 Score=85.60 Aligned_cols=87 Identities=20% Similarity=0.144 Sum_probs=50.4
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccC---------CCCCccccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE---------GDCFPGLYS 388 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---------~~~f~g~~~ 388 (771)
......+||||++| |++++. ...|.++|+....... ++..+.... .....
T Consensus 322 ~pa~I~lS~DGrfL-YVSnrg---------~d~VavfdV~d~~~~~-------lv~~I~tGG~~~~~~~~~G~~~~---- 380 (462)
T 2ece_A 322 LVTDIDISLDDKFL-YLSLWG---------IGEVRQYDISNPFKPV-------LTGKVKLGGIFHRADHPAGHKLT---- 380 (462)
T ss_dssp CCCCEEECTTSCEE-EEEETT---------TTEEEEEECSSTTSCE-------EEEEEECBTTTTCBCCTTSCCCC----
T ss_pred ceeEEEECCCCCEE-EEEeCC---------CCEEEEEEecCCCCcE-------EEEEEEeCCeeccccccccccCC----
Confidence 46778999999986 566653 3568888875322211 111111110 01111
Q ss_pred CCCCCCccccCCCEEEEEee-----------eCCeeEEEEE--ECCCCcEE
Q 004149 389 SSILSNPWLSDGCTMLLSSI-----------WGSSQVIISV--NVSSGELL 426 (771)
Q Consensus 389 ~~~~~~~~s~dg~~l~~~~~-----------~~~~~~l~~~--d~~tg~~~ 426 (771)
.....+.+||||++||++.+ ......++.+ |.++| ++
T Consensus 381 ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~ 430 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LE 430 (462)
T ss_dssp SCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EE
T ss_pred CCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ce
Confidence 13467889999999988872 2334567755 66677 55
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-05 Score=86.51 Aligned_cols=217 Identities=10% Similarity=-0.010 Sum_probs=122.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....++|+|+|+ | |+.+. ....+..++ .++....+.... .. ..++|+|||+.|+.....
T Consensus 131 ~~P~~la~d~~g~-l-yv~d~--~~~~I~~id~~~g~~~~~~~~~-~~----------~~ia~~~~g~~l~~~d~~---- 191 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-V-LAYQR--DDPRVRLISVDDNKVTTVHPGF-KG----------GKPAVTKDKQRVYSIGWE---- 191 (409)
T ss_dssp CCEEEEEECSTTE-E-EEEET--TTTEEEEEETTTTEEEEEEETC-CB----------CBCEECTTSSEEEEEBSS----
T ss_pred CCceEEEEeCCCC-E-EEEec--CCCcEEEEECCCCEEEEeeccC-CC----------CceeEecCCCcEEEEecC----
Confidence 3466788999998 4 44443 234577776 445444443331 11 238999999977665321
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee-eccC-CC-CCCccceEEEecCCCCC
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKG-IP-KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~-~l~~-~~-~~~~~~~~~wspDg~~~ 254 (771)
....|++++..++... .+.. .. ....+..++++|++..
T Consensus 192 --------------------------------------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~- 232 (409)
T 3hrp_A 192 --------------------------------------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW- 232 (409)
T ss_dssp --------------------------------------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-
T ss_pred --------------------------------------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-
Confidence 1137899998876542 2200 12 2335677899996665
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec----CCC-Cccc-c-ceeecCC
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TES-ISSA-F-FPRFSPD 327 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~-~~~~-~-~p~~SpD 327 (771)
|++.. ....|+++|+ +++....+ ... .... . ..+|+|+
T Consensus 233 ---lyv~d---------------~~~~I~~~d~-----------------~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 233 ---LYFVD---------------SNKNFGRFNV-----------------KTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp ---EEEEC---------------TTCEEEEEET-----------------TTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred ---EEEEE---------------CCCcEEEEEC-----------------CCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 77632 2237999997 55544433 221 1122 3 7899998
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc--cc--cCCCCCCccccCCCEE
Q 004149 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG--LY--SSSILSNPWLSDGCTM 403 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g--~~--~~~~~~~~~s~dg~~l 403 (771)
+..|++.... ...|++++..+. ...+ .... ...+...| .. -..+..+++++||+ |
T Consensus 278 ~g~lyv~d~~----------~~~I~~~~~~g~-~~~~-------~g~~--~~~g~~dg~~~~~~~~~P~gia~d~dG~-l 336 (409)
T 3hrp_A 278 DSNFYMSDQN----------LSSVYKITPDGE-CEWF-------CGSA--TQKTVQDGLREEALFAQPNGMTVDEDGN-F 336 (409)
T ss_dssp TTEEEEEETT----------TTEEEEECTTCC-EEEE-------EECT--TCCSCBCEEGGGCBCSSEEEEEECTTCC-E
T ss_pred CCEEEEEeCC----------CCEEEEEecCCC-EEEE-------EeCC--CCCCcCCCcccccEeCCCeEEEEeCCCC-E
Confidence 7888776543 246888887643 1110 0000 00000000 00 01234678999998 6
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 404 LLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
|++.. .+...|.++++.+|++..+..
T Consensus 337 yvad~-~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 337 YIVDG-FKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EEEET-TTTCEEEEEETTTTEEEEEEE
T ss_pred EEEeC-CCCCEEEEEECCCCEEEEEeC
Confidence 66532 145678889977888877653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-06 Score=87.22 Aligned_cols=233 Identities=10% Similarity=0.050 Sum_probs=126.4
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.|.+++|+..+.++... ...|+.++.. ++....+.. + ..+..++|+|||+.++.. . ..
T Consensus 53 gp~~~~~~~~l~~~d~~--------~~~i~~~d~~--~~~~~~~~~-~-----~~v~~i~~~~dg~l~v~~-~-----~g 110 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNIL--------ERELHELHLA--SGRKTVHAL-P-----FMGSALAKISDSKQLIAS-D-----DG 110 (326)
T ss_dssp EEEEETTTTEEEEEEGG--------GTEEEEEETT--TTEEEEEEC-S-----SCEEEEEEEETTEEEEEE-T-----TE
T ss_pred CCeEeCCCCEEEEEECC--------CCEEEEEECC--CCcEEEEEC-C-----CcceEEEEeCCCeEEEEE-C-----CC
Confidence 34456677777765322 2467776642 223333321 1 346778899999876543 2 23
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
++.++ .+++.+.+........ ...+..+.++|||+ |++.......
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~v~~~~~~~---------------------------- 156 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLP-----GNRSNDGRMHPSGA-LWIGTMGRKA---------------------------- 156 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCT-----TEEEEEEEECTTSC-EEEEEEETTC----------------------------
T ss_pred EEEEECCCCcEEEEeeCCCCCC-----CCCCCCEEECCCCC-EEEEeCCCcC----------------------------
Confidence 77777 5566555544321110 11235789999997 4443321100
Q ss_pred cCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 205 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
......||+++ +++.+.+ .........++|+|||+. |++... ....|++
T Consensus 157 ---------~~~~~~l~~~~--~g~~~~~--~~~~~~~~~i~~s~dg~~----lyv~~~--------------~~~~I~~ 205 (326)
T 2ghs_A 157 ---------ETGAGSIYHVA--KGKVTKL--FADISIPNSICFSPDGTT----GYFVDT--------------KVNRLMR 205 (326)
T ss_dssp ---------CTTCEEEEEEE--TTEEEEE--EEEESSEEEEEECTTSCE----EEEEET--------------TTCEEEE
T ss_pred ---------CCCceEEEEEe--CCcEEEe--eCCCcccCCeEEcCCCCE----EEEEEC--------------CCCEEEE
Confidence 01236789998 5666665 222224567899999997 777641 2237899
Q ss_pred EecccccchhhhhhhhcCCCCCC-cc---e---ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 285 VRVSLYKSEASELELKESSSEDL-PV---V---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~-~~---~---~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
++++. .++ .. + .+...........+++||+ |+..... ...|+++|..
T Consensus 206 ~d~~~---------------~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~----------~~~v~~~d~~ 259 (326)
T 2ghs_A 206 VPLDA---------------RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWG----------EGAVDRYDTD 259 (326)
T ss_dssp EEBCT---------------TTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEET----------TTEEEEECTT
T ss_pred EEccc---------------ccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeC----------CCEEEEECCC
Confidence 98720 133 21 1 1222234456678899997 3333322 1358888863
Q ss_pred CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCC
Q 004149 358 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGS 411 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s-~dg~~l~~~~~~~~ 411 (771)
++... .+..+. ..+..++|+ +|++.|++++...+
T Consensus 260 -g~~~~----------~i~~~~---------~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 260 -GNHIA----------RYEVPG---------KQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp -CCEEE----------EEECSC---------SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred -CCEEE----------EEECCC---------CCcEEEEEecCCCCEEEEEecCCC
Confidence 32210 010000 113456787 89888888776543
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-07 Score=81.71 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++| +... .|... |+ .+|.|+++|+||. |.+... . . . .+++.+.+..+.+. ++.+
T Consensus 22 ~~~vv~~H-~~~~----~~~~~---l~-~~~~v~~~d~~G~---G~s~~~--~-~--~--~~~~~~~~~~~~~~--~~~~ 80 (131)
T 2dst_A 22 GPPVLLVA-EEAS----RWPEA---LP-EGYAFYLLDLPGY---GRTEGP--R-M--A--PEELAHFVAGFAVM--MNLG 80 (131)
T ss_dssp SSEEEEES-SSGG----GCCSC---CC-TTSEEEEECCTTS---TTCCCC--C-C--C--HHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEEc-CCHH----HHHHH---Hh-CCcEEEEECCCCC---CCCCCC--C-C--C--HHHHHHHHHHHHHH--cCCC
Confidence 47899999 2221 22222 44 4599999999994 433211 1 1 1 55555555555544 2456
Q ss_pred eEEEEEcChhHHHHHHHHHhCCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
++.++|||+||.+++.++.++|.
T Consensus 81 ~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 81 APWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp SCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccEEEEEChHHHHHHHHHhcCCc
Confidence 89999999999999999999885
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=8.6e-06 Score=82.86 Aligned_cols=114 Identities=10% Similarity=-0.035 Sum_probs=60.8
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc--
Q 004149 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-- 234 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-- 234 (771)
..+|||||+.++..+.+... | ....+.....|.+||+.+++...+.
T Consensus 231 ~vafSpdG~~lvs~s~~~~~----w----------------------------~laSGs~D~tIklWd~~tgk~l~v~~~ 278 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCAK----E----------------------------SESLRSPVFQLIVINPKTTLSVGVMLY 278 (356)
T ss_dssp EEEEEETTEEEEEEC--------------------------------------------CCEEEEEEETTTTEEEEEEEE
T ss_pred EEEECCCCCEEEEeccCCCc----c----------------------------eeeccCCCcEEEEEECCCCEEEEEEEe
Confidence 55899999988776542210 0 1122345678899999998765431
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT 313 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt 313 (771)
..+.........-+.+|.. ++-.+ .+..|.++|+ .+++. ..|.
T Consensus 279 ~~p~Gh~~~~lsg~~sg~~----lASgS---------------~DgTIkIWDl-----------------~tGk~l~tL~ 322 (356)
T 2w18_A 279 CLPPGQAGRFLEGDVKDHC----AAAIL---------------TSGTIAIWDL-----------------LLGQCTALLP 322 (356)
T ss_dssp CCCTTCCCCEEEEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTCSEEEEEC
T ss_pred eccCCCcceeEccccCCCE----EEEEc---------------CCCcEEEEEC-----------------CCCcEEEEec
Confidence 0011111011111222333 33222 3347889998 66654 5566
Q ss_pred CCCcccc-ceeecCCCCEEEEEecCC
Q 004149 314 ESISSAF-FPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 314 ~~~~~~~-~p~~SpDG~~l~f~~~~~ 338 (771)
.+...+. ..+|||||++|+..+.+.
T Consensus 323 gH~~~vvs~vafSPDG~~LaSGS~D~ 348 (356)
T 2w18_A 323 PVSDQHWSFVKWSGTDSHLLAGQKDG 348 (356)
T ss_dssp CC--CCCCEEEECSSSSEEEEECTTS
T ss_pred CCCCCeEEEEEECCCCCEEEEEECCC
Confidence 5554444 589999999998777553
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=8.3e-06 Score=83.00 Aligned_cols=231 Identities=10% Similarity=0.031 Sum_probs=111.9
Q ss_pred ccccceEEEeCCC----CCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 97 EMTGASAVVPSPS----GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 97 ~~~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
+...+...++||| |+.++-.... ..++.+ .++ +.+.....+. |+.+....+||||+.++-..-
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~----~~v~~l-~~g--~lv~ss~~g~------d~~V~~~~~s~dG~~~~s~~~ 176 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI----KAVLGL-TKR--RLVSSSGTLS------DQQVEVMTFAEDGGGKENQFL 176 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE----EEEEEE-TTT--EEEEEESSST------TCEEEEEEECTTSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCe----EEEEec-CCC--cEEEecccCC------CCcEEEEEECCCCceeeeecc
Confidence 3346778889999 8888763321 112222 222 2222211111 223367889999987764322
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccC--CcCccc-CCccCceEEEEEccCCceee-ccCCC-CCCccceEEE
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE--DWGETY-AGKRQPSLFVININSGEVQA-VKGIP-KSLSVGQVVW 247 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~g~~~-~~~~~~~l~v~d~~~~~~~~-l~~~~-~~~~~~~~~w 247 (771)
... ......|++ +-++.+ .+..+..|.+||+++|+... +.+.. ....+...+|
T Consensus 177 ~~~----------------------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 177 MPP----------------------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp CCC----------------------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCC----------------------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 111 011222333 112333 34567899999999998544 42111 1124556689
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC------CCCccccc
Q 004149 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT------ESISSAFF 321 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt------~~~~~~~~ 321 (771)
||||+. ++..+...... ..........|.++|. .++...... .+.....+
T Consensus 235 SpdG~~----lvs~s~~~~~w---~laSGs~D~tIklWd~-----------------~tgk~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 235 SEMGLL----FIVLSHPCAKE---SESLRSPVFQLIVINP-----------------KTTLSVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp EETTEE----EEEEC---------------CCEEEEEEET-----------------TTTEEEEEEEECCCTTCCCCEEE
T ss_pred CCCCCE----EEEeccCCCcc---eeeccCCCcEEEEEEC-----------------CCCEEEEEEEeeccCCCcceeEc
Confidence 999987 76655311100 0001123346666776 555432211 11111111
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004149 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~ 401 (771)
.. .+|..++-.+.+ ..|.+||+.+++......+.. ......++|||||+
T Consensus 291 g~--~sg~~lASgS~D-----------gTIkIWDl~tGk~l~tL~gH~------------------~~vvs~vafSPDG~ 339 (356)
T 2w18_A 291 GD--VKDHCAAAILTS-----------GTIAIWDLLLGQCTALLPPVS------------------DQHWSFVKWSGTDS 339 (356)
T ss_dssp EE--EETTEEEEEETT-----------SCEEEEETTTCSEEEEECCC--------------------CCCCEEEECSSSS
T ss_pred cc--cCCCEEEEEcCC-----------CcEEEEECCCCcEEEEecCCC------------------CCeEEEEEECCCCC
Confidence 22 225555554443 359999999877532211110 00122368999999
Q ss_pred EEEEEeeeCCeeEEEEE
Q 004149 402 TMLLSSIWGSSQVIISV 418 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~ 418 (771)
+| ++.+.++..+||.+
T Consensus 340 ~L-aSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HL-LAGQKDGNIFVYHY 355 (356)
T ss_dssp EE-EEECTTSCEEEEEE
T ss_pred EE-EEEECCCcEEEecC
Confidence 65 56677788888853
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=86.74 Aligned_cols=201 Identities=12% Similarity=0.048 Sum_probs=114.2
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.++.|+|++..|+++.. ....|+++|.++++.+.+.
T Consensus 16 Egp~w~~~~~~l~~~d~-------------------------------------------~~~~i~~~d~~~~~~~~~~- 51 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDI-------------------------------------------PAKKVCRWDSFTKQVQRVT- 51 (297)
T ss_dssp EEEEEETTTTEEEEEET-------------------------------------------TTTEEEEEETTTCCEEEEE-
T ss_pred cCCeEECCCCEEEEEEC-------------------------------------------CCCEEEEEECCCCcEEEEe-
Confidence 58999999888888632 2368999999988776552
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
....+..++++|||+ |++.. ...|+++|+ ++++.+.+...
T Consensus 52 --~~~~~~~i~~~~dG~-----l~v~~----------------~~~l~~~d~-----------------~~g~~~~~~~~ 91 (297)
T 3g4e_A 52 --MDAPVSSVALRQSGG-----YVATI----------------GTKFCALNW-----------------KEQSAVVLATV 91 (297)
T ss_dssp --CSSCEEEEEEBTTSS-----EEEEE----------------TTEEEEEET-----------------TTTEEEEEEEC
T ss_pred --CCCceEEEEECCCCC-----EEEEE----------------CCeEEEEEC-----------------CCCcEEEEEec
Confidence 223577889999998 44433 126888987 66665554322
Q ss_pred -----CccccceeecCCCCEEEEEecCCCCCCC-CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC
Q 004149 316 -----ISSAFFPRFSPDGKFLVFLSAKSSVDSG-AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 316 -----~~~~~~p~~SpDG~~l~f~~~~~~~~~g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
.......+++|||+ |++.......... .......||+++..+ ....+... . .
T Consensus 92 ~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~-------~------~------- 149 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ-------V------D------- 149 (297)
T ss_dssp CTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE-------E------S-------
T ss_pred CCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-CEEEEeec-------c------c-------
Confidence 12356788999999 5565533210000 001234688887542 22111000 0 0
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE--E-ecC-C--CCCceeeEEeecCCEEEEEEeCCCCCCeEEEE
Q 004149 390 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL--R-ITP-A--ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 390 ~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~--~-l~~-~--~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~ 463 (771)
....++|+|||+.||++....+....|.++..+|.+. + +.. . ........++++|+ |+++.... .+|+++
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~---~~v~~~ 225 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNG---GRVIRL 225 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETT---TEEEEE
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCC---CEEEEE
Confidence 1236789999998888766554444443444677653 1 211 1 12223345666664 44444322 346666
Q ss_pred Eec
Q 004149 464 YFV 466 (771)
Q Consensus 464 ~~~ 466 (771)
+..
T Consensus 226 d~~ 228 (297)
T 3g4e_A 226 DPV 228 (297)
T ss_dssp CTT
T ss_pred cCC
Confidence 543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-05 Score=86.72 Aligned_cols=302 Identities=9% Similarity=-0.019 Sum_probs=155.4
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecC
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP 142 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 142 (771)
+..+...+.+.+|++.... ....+. ...+.+....|+ ++.++..+..+ .+.+| ..++........
T Consensus 132 l~sg~~dg~i~vwd~~~~~-~~~~~~-----~h~~~v~~~~~~--~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~h 198 (445)
T 2ovr_B 132 IVSGSDDNTLKVWSAVTGK-CLRTLV-----GHTGGVWSSQMR--DNIIISGSTDR-----TLKVWNAETGECIHTLYGH 198 (445)
T ss_dssp EEEEETTSCEEEEETTTCC-EEEECC-----CCSSCEEEEEEE--TTEEEEEETTS-----CEEEEETTTTEEEEEECCC
T ss_pred EEEEECCCcEEEEECCCCc-EEEEEc-----CCCCCEEEEEec--CCEEEEEeCCC-----eEEEEECCcCcEEEEECCC
Confidence 3334455677777764321 112221 122457777787 55676654433 45555 233333222211
Q ss_pred CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE
Q 004149 143 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 222 (771)
Q Consensus 143 ~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v 222 (771)
. + .+.++.|+ ++.|+..+.+.... .|+............+........+ +....+++.....|.+
T Consensus 199 ~---~------~v~~~~~~--~~~l~s~s~dg~i~--~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 199 T---S------TVRCMHLH--EKRVVSGSRDATLR--VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp S---S------CEEEEEEE--TTEEEEEETTSEEE--EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred C---C------cEEEEEec--CCEEEEEeCCCEEE--EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 1 1 12466664 56677766554322 2222111111111112222222333 3344556666789999
Q ss_pred EEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004149 223 ININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
||+.+++..... ......+..+.| |++. |+..+ .+..|.++|+
T Consensus 264 wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~~~---------------~d~~i~i~d~--------------- 306 (445)
T 2ovr_B 264 WDPETETCLHTL-QGHTNRVYSLQF--DGIH----VVSGS---------------LDTSIRVWDV--------------- 306 (445)
T ss_dssp EEGGGTEEEEEE-CCCSSCEEEEEE--CSSE----EEEEE---------------TTSCEEEEET---------------
T ss_pred EECCCCcEeEEe-cCCCCceEEEEE--CCCE----EEEEe---------------CCCeEEEEEC---------------
Confidence 999988765441 223345666666 7776 66554 3347888887
Q ss_pred CCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCC
Q 004149 303 SSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 381 (771)
Q Consensus 303 ~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (771)
.+++ ...+..+...+.. ++++|+.|+..+.+ ..|.+||+.+++.... +.....
T Consensus 307 --~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~----------~~~~~~- 360 (445)
T 2ovr_B 307 --ETGNCIHTLTGHQSLTSG--MELKDNILVSGNAD-----------STVKIWDIKTGQCLQT----------LQGPNK- 360 (445)
T ss_dssp --TTCCEEEEECCCCSCEEE--EEEETTEEEEEETT-----------SCEEEEETTTCCEEEE----------ECSTTS-
T ss_pred --CCCCEEEEEcCCcccEEE--EEEeCCEEEEEeCC-----------CeEEEEECCCCcEEEE----------EccCCC-
Confidence 4444 3445444444443 44567877766644 3588999877553211 100000
Q ss_pred CCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec------CCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 382 CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT------PAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 382 ~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~------~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
....+..++| +++. +++...++...+ +|+.+++..... ...+.+....|++++..++....+.+
T Consensus 361 -----~~~~v~~~~~--~~~~-l~s~~~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 361 -----HQSAVTCLQF--NKNF-VITSSDDGTVKL--WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp -----CSSCEEEEEE--CSSE-EEEEETTSEEEE--EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred -----CCCCEEEEEE--CCCE-EEEEeCCCeEEE--EECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 0012234455 4554 455555555444 578788755432 12223445677888776666666666
Q ss_pred CCCeEEEEEecc
Q 004149 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
.+..+++.++..
T Consensus 431 ~~~~l~v~df~~ 442 (445)
T 2ovr_B 431 EETKLLVLDFDV 442 (445)
T ss_dssp SCCEEEEEECCC
T ss_pred CccEEEEEECCC
Confidence 678888888753
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-05 Score=84.34 Aligned_cols=168 Identities=11% Similarity=0.110 Sum_probs=97.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC--------cceEEEecCCcccccccCCCcccceeecCC-CCeEE
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS--------QLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIA 168 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la 168 (771)
.+...+|||||++||...... .......+|+ .+ +.........+..+ .+.+++|+|+ ++.|+
T Consensus 94 ~v~~l~~spdg~~lav~~~sg-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~------~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSS-EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG------MVIDMKWNPTVPSMVA 166 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEET-TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGG------SEEEEEECSSCTTEEE
T ss_pred cccEEEEcCCCCEEEEEEecc-CCCceEEEEEccccccCCcCCcceeeeeeccCCCCC------ceEEEEECCCCCCEEE
Confidence 478899999999998632111 1122444552 11 11111222111111 2368999998 66666
Q ss_pred EEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEe
Q 004149 169 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws 248 (771)
..+. +..|.+||+.++...... ......+..++||
T Consensus 167 s~s~--------------------------------------------Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~ws 201 (434)
T 2oit_A 167 VCLA--------------------------------------------DGSIAVLQVTETVKVCAT-LPSTVAVTSVCWS 201 (434)
T ss_dssp EEET--------------------------------------------TSCEEEEEESSSEEEEEE-ECGGGCEEEEEEC
T ss_pred EEEC--------------------------------------------CCeEEEEEcCCCcceeec-cCCCCceeEEEEc
Confidence 6543 257899999887543221 2234467889999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-------CCccccc
Q 004149 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------SISSAFF 321 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-------~~~~~~~ 321 (771)
|||+. |+..+ .+..|.++|+ .+.....+.. +...+.+
T Consensus 202 pdg~~----lasgs---------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 202 PKGKQ----LAVGK---------------QNGTVVQYLP-----------------TLQEKKVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp TTSSC----EEEEE---------------TTSCEEEECT-----------------TCCEEEEECCCTTCCTTSCEEEEE
T ss_pred CCCCE----EEEEc---------------CCCcEEEEcc-----------------CCcccccccCCcccCCCCceeEEE
Confidence 99998 88766 2336888886 3222222221 1236788
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..|++++..++..+..+ |.......+.++++...
T Consensus 246 v~w~~~~~~l~~~~~~d----g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAAD----GTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETT----CCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCC----CccCCCCceEEEEeccC
Confidence 99999998876555443 21122345778887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-06 Score=89.53 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=59.6
Q ss_pred CceEEEEEccCC-----ce------eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004149 217 QPSLFVININSG-----EV------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 217 ~~~l~v~d~~~~-----~~------~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
...|.+||+.++ +. ..+. ......+..++|+|++.. ++.++. .+..|.++
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~----~las~s--------------~Dg~v~iw 177 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTVPS----MVAVCL--------------ADGSIAVL 177 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSCTT----EEEEEE--------------TTSCEEEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCCCC----EEEEEE--------------CCCeEEEE
Confidence 468999998764 11 1110 122446789999999544 544441 23368888
Q ss_pred ecccccchhhhhhhhcCCCCCCcce-ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 286 RVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
|+ .++... ....+...+...+|||||++|+..+.+. .|.+||..
T Consensus 178 D~-----------------~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg-----------~v~iwd~~ 222 (434)
T 2oit_A 178 QV-----------------TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG-----------TVVQYLPT 222 (434)
T ss_dssp EE-----------------SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS-----------CEEEECTT
T ss_pred Ec-----------------CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC-----------cEEEEccC
Confidence 87 444322 2223345688899999999998877553 48888876
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=93.02 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=66.9
Q ss_pred CCcEEEEEcCCCCCC------CCCcch----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcC---------CCCcc---
Q 004149 536 CDPLIVVLHGGPHSV------SLSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL---------PGKVG--- 593 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~------~~~~~~----~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~---------~~~~~--- 593 (771)
..|.||++||..... ....|. .++..|+++||.|+++|++| +|.+..... .+..+
T Consensus 51 ~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G---~G~S~~~~~~l~~~i~~g~g~sg~~~ 127 (431)
T 2hih_A 51 NKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSA---LASNHERAVELYYYLKGGRVDYGAAH 127 (431)
T ss_dssp CSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SSCHHHHHHHHHHHHHCEEEECCHHH
T ss_pred CCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCC---CCCCccchHHhhhhhhhccccccccc
Confidence 456799999965431 123443 47888999999999999999 443321000 00000
Q ss_pred ------ccchhhHHHHHHHHHHcCCCC-CCeEEEEEcChhHHHHHHHHHh--------------------------CCCc
Q 004149 594 ------SQDVNDVLTAIDHVIDMGLAN-PSKVTVVGGSHGGFLTTHLIGQ--------------------------APDK 640 (771)
Q Consensus 594 ------~~~~~D~~~~i~~l~~~~~~d-~~ri~l~G~S~GG~~a~~~a~~--------------------------~p~~ 640 (771)
....+|+.+.++ . .. .+++.|+||||||.++..++.. +|++
T Consensus 128 ~~~~~~~~~a~dl~~ll~----~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~ 201 (431)
T 2hih_A 128 SEKYGHERYGKTYEGVLK----D--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNM 201 (431)
T ss_dssp HHHHTCCSEEEEECCSCT----T--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSC
T ss_pred cccCCHHHHHHHHHHHHH----H--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccc
Confidence 000111111111 1 11 3789999999999999998865 6889
Q ss_pred eeEEEecCCcc
Q 004149 641 FVAAAARNPLC 651 (771)
Q Consensus 641 ~~a~v~~~p~~ 651 (771)
++.+|++++..
T Consensus 202 V~slv~i~tP~ 212 (431)
T 2hih_A 202 VTSITTIATPH 212 (431)
T ss_dssp EEEEEEESCCT
T ss_pred eeEEEEECCCC
Confidence 99999888754
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6.2e-06 Score=89.79 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=69.1
Q ss_pred ccceEEEeCC-----CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC--cccccccCCCcccceee-c-CCCCeEE
Q 004149 99 TGASAVVPSP-----SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISW-N-SDETLIA 168 (771)
Q Consensus 99 ~~~~~~~~SP-----dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~w-S-pDg~~la 168 (771)
+..-+|..|. ||+++ |+.+. .+..+-+++ +..+..+++.++. +.| ++.+ + ||+++|+
T Consensus 85 gd~hh~~~s~t~g~~DG~~l-fVnd~--~~~rVavIdl~t~~~~~ii~ip~g~~ph----------g~~~~~~p~~~~v~ 151 (595)
T 1fwx_A 85 GDLHHVHMSFTEGKYDGRFL-FMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIH----------GLRPQKWPRSNYVF 151 (595)
T ss_dssp CCBCCEEEEEETTEEEEEEE-EEEET--TTTEEEEEETTTTEEEEEEECSSCCSEE----------EEEECCSSBCSEEE
T ss_pred CCCCccccCCCCCCcCCCEE-EEEcC--CCCEEEEEECCCceEeeEEeCCCCCCCc----------ceeeeecCCCcEEE
Confidence 4455688888 99988 55332 456788888 6667777777653 333 6676 6 9999986
Q ss_pred EEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEe
Q 004149 169 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws 248 (771)
...+...+-.+ . +..++..+ .....+-++|.++.++..- .+-.........|
T Consensus 152 ~~~~~~~p~~~--------d-----------g~~l~~~~-------~~~~~vtvID~~t~~v~~q--I~Vgg~pd~~~~s 203 (595)
T 1fwx_A 152 CNGEDETPLVN--------D-----------GTNMEDVA-------NYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDAD 203 (595)
T ss_dssp EEECSCEESSC--------S-----------SSSTTCGG-------GEEEEEEEEETTTTEEEEE--EEESSCCCCEEEC
T ss_pred EecccccccCC--------C-----------Cccccccc-------ccCceEEEEECCCCeEEEE--EEeCCCccceEEC
Confidence 55443321100 0 01111111 1346889999998876443 2222245678899
Q ss_pred cCCCC
Q 004149 249 PLNEG 253 (771)
Q Consensus 249 pDg~~ 253 (771)
|||++
T Consensus 204 pdGk~ 208 (595)
T 1fwx_A 204 YEGKW 208 (595)
T ss_dssp SSSSE
T ss_pred CCCCE
Confidence 99995
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.36 E-value=7e-05 Score=76.69 Aligned_cols=196 Identities=10% Similarity=0.021 Sum_probs=104.4
Q ss_pred ceEEEEEccCCceeec-cCCCC---CCccceEEEecCCCCCccEEEEEeecCcceeeeee-eeccCCceeEEEecccccc
Q 004149 218 PSLFVININSGEVQAV-KGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK-YCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l-~~~~~---~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~l~~~d~~~~~~ 292 (771)
..|+++|.+ ++.+.+ ..... ...+..++++|||+ |+++..........+. ........||.++.
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-----l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 160 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT----- 160 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-----EEEEecCcccccccccccccCCCCeEEEECC-----
Confidence 368899988 776654 21111 12467889999986 7666532100000000 00011247888886
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeec----CCCCEEEEEecCCCCCCCCccccccceeeecC-CCCCCCCccc
Q 004149 293 EASELELKESSSEDLPVVNLTESISSAFFPRFS----PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP-TNGNFSSLEK 367 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~S----pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~ 367 (771)
+ ++.+.+...........|+ |||+.|++..... ..|+++|++ ++....
T Consensus 161 ------------~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~----------~~i~~~~~~~~g~~~~---- 213 (314)
T 1pjx_A 161 ------------D-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT----------KKLWSYDIKGPAKIEN---- 213 (314)
T ss_dssp ------------T-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT----------TEEEEEEEEETTEEEE----
T ss_pred ------------C-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC----------CeEEEEECCCCCcccc----
Confidence 4 5444443333335677899 9999877665432 468888875 222100
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE-EEecCCCCCceeeEEeecCCE
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDN 446 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~d~~~ 446 (771)
..+...+ .. ..+ ..+..+++++||+ |+++.... ..|+++|.++++. ..+...........++++++.
T Consensus 214 -~~~~~~~--~~-~~~-----~~p~~i~~d~~G~-l~v~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~ 281 (314)
T 1pjx_A 214 -KKVWGHI--PG-THE-----GGADGMDFDEDNN-LLVANWGS--SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKT 281 (314)
T ss_dssp -EEEEEEC--CC-CSS-----CEEEEEEEBTTCC-EEEEEETT--TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSE
T ss_pred -ceEEEEC--CC-CCC-----CCCCceEECCCCC-EEEEEcCC--CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCE
Confidence 0000000 00 000 0123567888986 55554322 3688889886654 334333233445667888887
Q ss_pred EEEEEeCCCCCCeEEEEEec
Q 004149 447 IIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 447 l~~~~s~~~~p~~l~~~~~~ 466 (771)
|++..... ..|+++++.
T Consensus 282 l~v~~~~~---~~l~~~~~~ 298 (314)
T 1pjx_A 282 IFVTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp EEEEETTT---TEEEEEECS
T ss_pred EEEEeCCC---CeEEEEeCC
Confidence 77766432 467777754
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-06 Score=89.28 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCcEEEEEcCCCCCCCC-----Ccch----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHH
Q 004149 536 CDPLIVVLHGGPHSVSL-----SSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDH 606 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~-----~~~~----~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~ 606 (771)
..+.||++||....... ..|. ..++.|+++||.|+++|++| +|.+... ..++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g---~G~s~~~----------a~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP---LSSNWDR----------ACEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SBCHHHH----------HHHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCC---CCCcccc----------HHHHHHHHHh
Confidence 34569999996554211 1243 34588999999999999998 4433210 1122222221
Q ss_pred --------HHHc---------------CCCCCCeEEEEEcChhHHHHHHHHHh-------------------CC------
Q 004149 607 --------VIDM---------------GLANPSKVTVVGGSHGGFLTTHLIGQ-------------------AP------ 638 (771)
Q Consensus 607 --------l~~~---------------~~~d~~ri~l~G~S~GG~~a~~~a~~-------------------~p------ 638 (771)
+.+. .....+++.|+||||||.++..++.+ +|
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~ 151 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCC
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccc
Confidence 1000 00235789999999999999999872 35
Q ss_pred CceeEEEecCCcc
Q 004149 639 DKFVAAAARNPLC 651 (771)
Q Consensus 639 ~~~~a~v~~~p~~ 651 (771)
++++.+|++++..
T Consensus 152 ~~V~sLV~i~tP~ 164 (387)
T 2dsn_A 152 HFVLSVTTIATPH 164 (387)
T ss_dssp CCEEEEEEESCCT
T ss_pred cceeEEEEECCCC
Confidence 6889999887643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00013 Score=74.99 Aligned_cols=229 Identities=9% Similarity=-0.028 Sum_probs=133.4
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCC
Q 004149 112 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 190 (771)
Q Consensus 112 ~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 190 (771)
+|+|.... .+..++ ++.+...++...... .++.|++++..|+++..
T Consensus 3 ~ll~~~~~-----~I~~i~~~~~~~~~~~~~~~~p----------~g~~~d~~~~~ly~~D~------------------ 49 (316)
T 1ijq_A 3 YLFFTNRH-----EVRKMTLDRSEYTSLIPNLRNV----------VALDTEVASNRIYWSDL------------------ 49 (316)
T ss_dssp EEEEECBS-----SEEEEETTSCCCEEEECSCSSE----------EEEEEETTTTEEEEEET------------------
T ss_pred EEEEECCC-----eEEEEECCCcceEehhcCCCce----------EEEEEEeCCCEEEEEEC------------------
Confidence 45555333 377777 444444444322222 48899999888877532
Q ss_pred CCccCCCCCCcccccCCcCcccCCccCceEEEEEccC----CceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecC
Q 004149 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS----GEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 191 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~----~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
....|+++++++ ...+.+ .+. -..+..+++.+.++. |+++-.
T Consensus 50 -------------------------~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~~~~~----ly~~d~-- 96 (316)
T 1ijq_A 50 -------------------------SQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSN----IYWTDS-- 96 (316)
T ss_dssp -------------------------TTTEEEEEEC--------CEEE--ECSSCSCCCEEEEETTTTE----EEEEET--
T ss_pred -------------------------CCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEeecCCe----EEEEEC--
Confidence 236789999876 333333 222 235667888887776 776531
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
....|.++++ ++...+.+.. ........++.|++..|+|.....
T Consensus 97 ------------~~~~I~~~~~-----------------~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------ 141 (316)
T 1ijq_A 97 ------------VLGTVSVADT-----------------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------ 141 (316)
T ss_dssp ------------TTTEEEEEET-----------------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS------
T ss_pred ------------CCCEEEEEeC-----------------CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC------
Confidence 2337889997 5554444433 334567788999999888876431
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
...|+++++++...+.+... .-. ....++|++++++||++.. ....|+++++++..
T Consensus 142 ---~~~I~~~~~dG~~~~~~~~~------------~~~-------~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 142 ---PAKIKKGGLNGVDIYSLVTE------------NIQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGN 197 (316)
T ss_dssp ---SCEEEEEETTSCCEEEEECS------------SCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCS
T ss_pred ---CCeEEEEcCCCCCeEEEEEC------------CCC-------CceEEEEeccCCEEEEEEC--CCCeEEEEecCCCc
Confidence 24699998765332111000 001 1346789999888988754 34578899998766
Q ss_pred EEEecCCC-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 425 LLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 425 ~~~l~~~~-~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
.+.+.... ....-..++.+++.+|++.. ...+|++++..++
T Consensus 198 ~~~~~~~~~~~~~P~giav~~~~ly~~d~---~~~~V~~~~~~~g 239 (316)
T 1ijq_A 198 RKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTG 239 (316)
T ss_dssp CEEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTC
T ss_pred eEEEeecCCccCCcEEEEEECCEEEEEEC---CCCeEEEEeCCCC
Confidence 66554321 11112244556778877663 3356777765433
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00038 Score=71.92 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=63.0
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
....+++||+..|+..... ..+|.+++..+++... .+...... ..+..++++|
T Consensus 198 p~gia~d~~~g~l~v~d~~----------~~~I~~~~~~~G~~~~----------~~~~~~~~-------~~~~~~~~~p 250 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE----------NGRIQCFKTDTKEFVR----------EIKHASFG-------RNVFAISYIP 250 (329)
T ss_dssp EEEEEEETTTTEEEEEETT----------TTEEEEEETTTCCEEE----------EECCTTTT-------TCEEEEEEET
T ss_pred CcEEEEECCCCEEEEEECC----------CCEEEEEECCCCcEEE----------EEeccccC-------CCcceeeecC
Confidence 5678999997777666543 2468899987554311 11000000 1123455677
Q ss_pred CCCEEEEEee-----eCCeeEEEEEECCCCcEEEecC----CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 399 DGCTMLLSSI-----WGSSQVIISVNVSSGELLRITP----AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 399 dg~~l~~~~~-----~~~~~~l~~~d~~tg~~~~l~~----~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
| .++.... ......++.++..+|++..... .........++++| .|+++..... +|.++++.
T Consensus 251 -g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~---~I~~~~~~ 321 (329)
T 3fvz_A 251 -G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTN---TVWKFTLT 321 (329)
T ss_dssp -T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSC---CEEEEEEE
T ss_pred -C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCC---EEEEEeCC
Confidence 3 2322221 1223468888988888776642 11223446778887 6666554432 56666654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.2e-05 Score=75.41 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=106.8
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.++|++++++..-...+. ......++++|+. |+...|. ...++++|.
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~g~~----lyv~t~~--------------~~~v~viD~--------- 93 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDD--SYFGEGLTLLNEK----LYQVVWL--------------KNIGFIYDR--------- 93 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEETT--------------CSEEEEEET---------
T ss_pred CCEEEEEECCCCCEEEEEecCC--CcceEEEEEeCCE----EEEEEec--------------CCEEEEEEC---------
Confidence 4789999999998766521222 2233345566776 7777643 237999997
Q ss_pred hhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.+ ...+... ......+++||++|+ .++. ...|+++|.++.+... .+
T Consensus 94 --------~t~~v~~~i~~g--~~~g~glt~Dg~~l~-vs~g----------s~~l~viD~~t~~v~~----------~I 142 (266)
T 2iwa_A 94 --------RTLSNIKNFTHQ--MKDGWGLATDGKILY-GSDG----------TSILYEIDPHTFKLIK----------KH 142 (266)
T ss_dssp --------TTTEEEEEEECC--SSSCCEEEECSSSEE-EECS----------SSEEEEECTTTCCEEE----------EE
T ss_pred --------CCCcEEEEEECC--CCCeEEEEECCCEEE-EECC----------CCeEEEEECCCCcEEE----------EE
Confidence 5544 3344322 122345889999876 4542 2579999987755311 11
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--------------CCceeeEEe
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLT 441 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--------------~~~~~~~~s 441 (771)
..... ..| ...+..+.|. || +||.. .+ ....|.+||++++++.....-. .......++
T Consensus 143 ~Vg~~-~~p---~~~~nele~~-dg-~lyvn-~~-~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 143 NVKYN-GHR---VIRLNELEYI-NG-EVWAN-IW-QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp ECEET-TEE---CCCEEEEEEE-TT-EEEEE-ET-TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred EECCC-Ccc---cccceeEEEE-CC-EEEEe-cC-CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence 11000 000 0012244566 66 56544 32 3457999999999876543221 123456899
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 442 LDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 442 ~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
++++.++.+.... +.++.+++...
T Consensus 215 ~~~~~lfVTgk~~---~~v~~i~l~~~ 238 (266)
T 2iwa_A 215 QENKRIFVTGKLW---PKLFEIKLHLV 238 (266)
T ss_dssp TTTTEEEEEETTC---SEEEEEEEEEC
T ss_pred CCCCEEEEECCCC---CeEEEEEEecc
Confidence 9999988887544 56888887543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00015 Score=76.86 Aligned_cols=178 Identities=11% Similarity=0.002 Sum_probs=109.9
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|++++++++..+.+. ...-..+..+++.+.+.. |+++-. ....|+++++
T Consensus 138 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----lY~~d~--------------~~~~I~~~~~---------- 188 (386)
T 3v65_B 138 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 188 (386)
T ss_dssp TEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTE----EEEEET--------------TTTEEEECBT----------
T ss_pred CcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCe----EEEEcC--------------CCCeEEEEeC----------
Confidence 68999999988766652 222235567888888776 777642 2237888887
Q ss_pred hhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 298 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++...+.+. .........++.|++..|+|..... ...|+++++++...+.+...
T Consensus 189 -------dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~--------- 243 (386)
T 3v65_B 189 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADT--------- 243 (386)
T ss_dssp -------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECS---------
T ss_pred -------CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC---------CCEEEEEeCCCCCcEEEEEC---------
Confidence 544444433 3334567789999999998876432 25799999876443221110
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCC
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~ 456 (771)
.-. ....++|++++++||++-. ....|++++++++..+.+..... ..-..++.+++.||++.. .
T Consensus 244 ---~~~-------~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~-~~P~giav~~~~ly~td~---~ 307 (386)
T 3v65_B 244 ---HLF-------WPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGL-PHPFAITVFEDSLYWTDW---H 307 (386)
T ss_dssp ---SCS-------CEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSC-SSEEEEEEETTEEEEEET---T
T ss_pred ---CCC-------CeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCC-CCceEEEEECCEEEEeeC---C
Confidence 000 1246789988888988754 34578999987666555543322 112234446777777653 3
Q ss_pred CCeEEEEEe
Q 004149 457 VPQVKYGYF 465 (771)
Q Consensus 457 p~~l~~~~~ 465 (771)
...|.+++.
T Consensus 308 ~~~V~~~~~ 316 (386)
T 3v65_B 308 TKSINSANK 316 (386)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEEC
Confidence 345776663
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.4e-05 Score=79.73 Aligned_cols=83 Identities=8% Similarity=-0.045 Sum_probs=50.8
Q ss_pred eeecCCCCEEEEEec-C-CCCCCCCccccccceeeecCCCCCCC-CccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 322 PRFSPDGKFLVFLSA-K-SSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 322 p~~SpDG~~l~f~~~-~-~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
..++|||+++++... . ... .+. ...+.++|+++.+... +..+. ....+.|++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~-~~~---~~~~~ViD~~t~~vv~~i~vg~---------------------~p~gi~~s~ 323 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSC-LAA---AENTSSVTASVGQTSGPISNGH---------------------DSDAIIAAQ 323 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCT-TSC---EEEEEEEESSSCCEEECCEEEE---------------------EECEEEECC
T ss_pred eEEcCCCCEEEEEeccccCcc-ccc---CCCEEEEECCCCeEEEEEECCC---------------------CcceEEECC
Confidence 579999999876544 1 100 000 1234599998866421 11111 134678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
||++++++... +...+..||+.++++..-..
T Consensus 324 Dg~~l~va~~~-~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 324 DGASDNYANSA-GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SSSCEEEEEET-TTTEEEEEESSSCEEEEECC
T ss_pred CCCEEEEEccC-CCCeEEEEECCCCcEEEEEE
Confidence 99988777652 23568888999998775544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-05 Score=74.97 Aligned_cols=204 Identities=9% Similarity=0.016 Sum_probs=117.5
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
....|+||| + +|++....+...+..++ ..++..+.+.++...+ ...++++|++|+....
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f----------geGi~~~g~~lyv~t~-------- 83 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF----------GEGLTLLNEKLYQVVW-------- 83 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC----------EEEEEEETTEEEEEET--------
T ss_pred ccEEEeCCC-e-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc----------eEEEEEeCCEEEEEEe--------
Confidence 567899996 4 46665433567788888 6677766666644332 3345556777766533
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
....++++|.++.++..- ++.. .......++||++ |+.
T Consensus 84 -----------------------------------~~~~v~viD~~t~~v~~~--i~~g-~~~g~glt~Dg~~----l~v 121 (266)
T 2iwa_A 84 -----------------------------------LKNIGFIYDRRTLSNIKN--FTHQ-MKDGWGLATDGKI----LYG 121 (266)
T ss_dssp -----------------------------------TCSEEEEEETTTTEEEEE--EECC-SSSCCEEEECSSS----EEE
T ss_pred -----------------------------------cCCEEEEEECCCCcEEEE--EECC-CCCeEEEEECCCE----EEE
Confidence 236899999998876543 2222 1234557889997 764
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC--c---cccceeecCCCCEEEEE
Q 004149 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI--S---SAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~--~---~~~~p~~SpDG~~l~f~ 334 (771)
++ ....|+.+|. ++.+ ...+.-.. . ......|. || +| |.
T Consensus 122 -s~--------------gs~~l~viD~-----------------~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~l-yv 166 (266)
T 2iwa_A 122 -SD--------------GTSILYEIDP-----------------HTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EV-WA 166 (266)
T ss_dssp -EC--------------SSSEEEEECT-----------------TTCCEEEEEECEETTEECCCEEEEEEE-TT-EE-EE
T ss_pred -EC--------------CCCeEEEEEC-----------------CCCcEEEEEEECCCCcccccceeEEEE-CC-EE-EE
Confidence 42 2237999997 5544 33333211 1 13345677 76 44 44
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc-C--CCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-E--GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
.... ...|.++|.++++... .+++-... . ....+ ....+..++|+||++++|++. ..
T Consensus 167 n~~~---------~~~V~vID~~tg~V~~-------~I~~~g~~~~~~~~~~~--~~~v~nGIa~~~~~~~lfVTg--k~ 226 (266)
T 2iwa_A 167 NIWQ---------TDCIARISAKDGTLLG-------WILLPNLRKKLIDEGFR--DIDVLNGIAWDQENKRIFVTG--KL 226 (266)
T ss_dssp EETT---------SSEEEEEETTTCCEEE-------EEECHHHHHHHHHTTCT--TCCCEEEEEEETTTTEEEEEE--TT
T ss_pred ecCC---------CCeEEEEECCCCcEEE-------EEECCCccccccccccc--ccCceEEEEEcCCCCEEEEEC--CC
Confidence 4432 3579999998877421 11110000 0 00000 001234678999999887764 45
Q ss_pred eeEEEEEECCC
Q 004149 412 SQVIISVNVSS 422 (771)
Q Consensus 412 ~~~l~~~d~~t 422 (771)
+..||.|++..
T Consensus 227 ~~~v~~i~l~~ 237 (266)
T 2iwa_A 227 WPKLFEIKLHL 237 (266)
T ss_dssp CSEEEEEEEEE
T ss_pred CCeEEEEEEec
Confidence 56788888644
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00026 Score=73.73 Aligned_cols=111 Identities=11% Similarity=-0.008 Sum_probs=57.9
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
....+|||||+.|++..... ..||.++........+.... +...+...... .....+++++
T Consensus 197 ~~gia~s~dg~~ly~~~~~~----------~~l~~~~~~~~~~~~~~~~~--~~~~~~~~g~~-------g~pdgia~d~ 257 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHS----------TSMYRIKSADLSNLQLTDAE--LGSKIERYSEK-------PICDGISIDK 257 (343)
T ss_dssp EEEEEECTTSCEEEEEESSC----------SEEEEEEHHHHTCTTCCHHH--HHTTCEEEEEC-------CSCSCEEECT
T ss_pred cceeEeccCCCEEEEEeCCC----------CeEEEEEHHHhcCCCCChhh--hhcceEecccC-------CCCceEEECC
Confidence 35689999999998877542 36888875311000010000 00000000000 0234678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--CCceeeEEeecCCEEEEEEe
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~d~~~l~~~~s 452 (771)
||. |+++... ...|+++|.++|++..+.... .......+++++. |+++.+
T Consensus 258 ~G~-l~va~~~--~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~-l~v~~~ 309 (343)
T 2qe8_A 258 DHN-IYVGDLA--HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY-LYFDCN 309 (343)
T ss_dssp TCC-EEEEEGG--GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC-EEEEEC
T ss_pred CCC-EEEEccC--CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc-EEEEeC
Confidence 986 6665433 346888898667776665332 1233456666654 555544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00026 Score=73.78 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=108.5
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|++++++++..+.+. ...-..+..+++.+.+.. |+++-. ....|+++++
T Consensus 95 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~---------- 145 (349)
T 3v64_C 95 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 145 (349)
T ss_dssp TEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET----------
T ss_pred CceEEEecCCCCceEEE-eCCCCCccEEEEecCCCe----EEEEcC--------------CCCeEEEEcC----------
Confidence 68999999988766652 122234567888888776 777642 2237999997
Q ss_pred hhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 298 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++...+.+. .........++.|++..|+|..... ...|+++++++...+.+...
T Consensus 146 -------dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~--------- 200 (349)
T 3v64_C 146 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADT--------- 200 (349)
T ss_dssp -------TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEESCCS---------
T ss_pred -------CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC---------CCEEEEEeCCCCCcEEEEEC---------
Confidence 554444443 3334567789999999898887432 25799999876443222110
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCC
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~ 456 (771)
... ....++|++++++||++-. ....|+++++++...+.+...... .-..++.+++.||++...
T Consensus 201 ---~~~-------~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~~~~ly~td~~--- 264 (349)
T 3v64_C 201 ---HLF-------WPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLP-HPFAITVFEDSLYWTDWH--- 264 (349)
T ss_dssp ---SCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCS-SEEEEEEETTEEEEEETT---
T ss_pred ---CCC-------CcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCC-CceEEEEECCEEEEecCC---
Confidence 001 1246789988888988754 345789999877665555432221 112334466677766532
Q ss_pred CCeEEEEE
Q 004149 457 VPQVKYGY 464 (771)
Q Consensus 457 p~~l~~~~ 464 (771)
...|.+++
T Consensus 265 ~~~V~~~~ 272 (349)
T 3v64_C 265 TKSINSAN 272 (349)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 23466655
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00015 Score=72.42 Aligned_cols=174 Identities=5% Similarity=-0.049 Sum_probs=95.2
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|+++|.+++....+. ......+..++++|||+ |++... ....|++++.
T Consensus 87 ~~i~~~d~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 136 (270)
T 1rwi_B 87 NRVVTLAAGSNNQTVLP-FDGLNYPEGLAVDTQGA-----VYVADR--------------GNNRVVKLAA---------- 136 (270)
T ss_dssp TEEEEECTTCSCCEECC-CCSCSSEEEEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred CEEEEEeCCCceEeeee-cCCcCCCcceEECCCCC-----EEEEEC--------------CCCEEEEEEC----------
Confidence 57888998877665552 12223567889999886 665531 1236888875
Q ss_pred hhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 298 ELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
.+........ .........++|||+ |++.... ...|+++|..++.......
T Consensus 137 -------~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~~~~~~~~~~---------- 188 (270)
T 1rwi_B 137 -------GSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPF---------- 188 (270)
T ss_dssp -------TCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCC----------
T ss_pred -------CCceeEeeccccCCCceeEEEeCCCC-EEEEECC----------CCEEEEEecCCCceEeecc----------
Confidence 3333222222 223467789999998 5544432 2468899876543211100
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCCC
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
..+ ..+..+++.+|| .|+++... ...|++++.++.....+.... .......++++|+ |+++....
T Consensus 189 ----~~~-----~~p~~i~~d~~g-~l~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~- 254 (270)
T 1rwi_B 189 ----TDI-----TAPWGIAVDEAG-TVYVTEHN--TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGN- 254 (270)
T ss_dssp ----SSC-----CSEEEEEECTTC-CEEEEETT--TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGG-
T ss_pred ----cCC-----CCceEEEECCCC-CEEEEECC--CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EEEEECCC-
Confidence 000 123456788888 46665432 335778888766555443222 2233445666665 55444322
Q ss_pred CCCeEEEEEe
Q 004149 456 DVPQVKYGYF 465 (771)
Q Consensus 456 ~p~~l~~~~~ 465 (771)
.+|.++++
T Consensus 255 --~~v~~~~~ 262 (270)
T 1rwi_B 255 --DRVVKLTS 262 (270)
T ss_dssp --TEEEEECC
T ss_pred --CEEEEEcC
Confidence 34555554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-05 Score=85.16 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=58.5
Q ss_pred ceEEEEEccC--Cce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 218 PSLFVININS--GEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 218 ~~l~v~d~~~--~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
..+-++|..+ +++ ... ++.......+.+||||++ ++. +.. ...++.++|+....
T Consensus 254 ~~V~VID~~~~~~~~~~~~--Ipvg~~PhGv~~sPDGk~----v~V-~~~-------------~s~~VsVid~~~~~--- 310 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRY--IPIANNPHGCNMAPDKKH----LCV-AGK-------------LSPTVTVLDVTRFD--- 310 (595)
T ss_dssp TTEEEEECSGGGCCSSEEE--EEEESSCCCEEECTTSSE----EEE-ECT-------------TSSBEEEEEGGGHH---
T ss_pred CcEEEEeCcccCCceeEEE--EecCCCceEEEEcCCCCE----EEE-eCC-------------CCCeEEEEECcccc---
Confidence 4588999987 443 333 344446678899999996 554 432 22378899972100
Q ss_pred hhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 295 SELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
.+ +.......... ..+ .-.......+|+||| . +|++..- .+++.+||+++
T Consensus 311 -~~-~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~-aY~t~~l---------dsqV~kwdi~~ 361 (595)
T 1fwx_A 311 -AV-FYENADPRSAVVAEP-ELGLGPLHTAFDGRG-N-AYTSLFL---------DSQVVKWNIED 361 (595)
T ss_dssp -HH-HHSCCCGGGGEEECC-BCCSCEEEEEECTTS-E-EEEEETT---------TTEEEEEEHHH
T ss_pred -cc-cccccCcccceEEEc-CCCCCcceEEECCCC-e-EEEEEec---------CCcEEEEEhhH
Confidence 00 00000000011 122 122346778999999 4 6777654 36788888765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00036 Score=71.27 Aligned_cols=228 Identities=13% Similarity=0.109 Sum_probs=120.8
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...++|+|+|+ | |+.+. ....++.++..+............ .+++++|||+ | |+++...
T Consensus 34 pegia~~~~g~-l-yv~d~--~~~~I~~~d~~g~~~~~~~~~~~p----------~gia~~~dG~-l-~vad~~~----- 92 (306)
T 2p4o_A 34 LENLASAPDGT-I-FVTNH--EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-L-VATGWNA----- 92 (306)
T ss_dssp EEEEEECTTSC-E-EEEET--TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-E-EEEEECT-----
T ss_pred cceEEECCCCC-E-EEEeC--CCCeEEEECCCCceEEEEeCCCCc----------eeEEEcCCCc-E-EEEeccC-----
Confidence 45689999997 5 44443 234578777445544444443333 4889999998 4 4433210
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
....|+.+|..+++++.+...+.......++..+++ . ++
T Consensus 93 -----------------------------------~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~----~~- 131 (306)
T 2p4o_A 93 -----------------------------------DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-Q----YL- 131 (306)
T ss_dssp -----------------------------------TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-E----EE-
T ss_pred -----------------------------------CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-c----EE-
Confidence 123688888888887665212222222334433433 2 33
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cce---------ecCCCCccccceeecCCCC
Q 004149 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV---------NLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~---------~lt~~~~~~~~p~~SpDG~ 329 (771)
++.. ....||.+|. .++ +.. ............ +|||+
T Consensus 132 v~d~-------------~~g~i~~~d~-----------------~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 132 TADS-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp EEET-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred EEEC-------------CCCeEEEEeC-----------------CCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 3321 2347888886 322 111 000111112222 89999
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~ 409 (771)
+|++.... ..+|+++++++.+. +.. ...... + .....+++.+||+ |+++..
T Consensus 180 ~lyv~d~~----------~~~I~~~~~~~~g~--~~~-~~~~~~---------~-----~~P~gi~vd~dG~-l~va~~- 230 (306)
T 2p4o_A 180 FLYVSNTE----------KMLLLRIPVDSTDK--PGE-PEIFVE---------Q-----TNIDDFAFDVEGN-LYGATH- 230 (306)
T ss_dssp EEEEEETT----------TTEEEEEEBCTTSC--BCC-CEEEEE---------S-----CCCSSEEEBTTCC-EEEECB-
T ss_pred EEEEEeCC----------CCEEEEEEeCCCCC--CCc-cEEEec---------c-----CCCCCeEECCCCC-EEEEeC-
Confidence 88776644 25799999875221 110 001110 0 1245678899996 655443
Q ss_pred CCeeEEEEEECCCCcEEEe---cCCCCCceeeEEe---ecCCEEEEEEeC
Q 004149 410 GSSQVIISVNVSSGELLRI---TPAESNFSWSLLT---LDGDNIIAVSSS 453 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s---~d~~~l~~~~s~ 453 (771)
....|.+++.+ |++..+ ...........|. +|++.||.+...
T Consensus 231 -~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 231 -IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -CCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 23457788875 666543 2221223445666 677888777654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00064 Score=70.78 Aligned_cols=162 Identities=9% Similarity=0.058 Sum_probs=105.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....++|.|.+..|.++- . ....|+.+. +++....+....... ..++++.+.+..|++...
T Consensus 73 ~~~~~l~~d~~~~~ly~~D-~--~~~~I~r~~~~g~~~~~~~~~~~~~---------p~glavd~~~g~ly~~d~----- 135 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSD-V--TLDRILRANLNGSNVEEVVSTGLES---------PGGLAVDWVHDKLYWTDS----- 135 (349)
T ss_dssp SCEEEEEEETTTTEEEEEE-T--TTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTEEEEEET-----
T ss_pred CceEEEEEeccccEEEEEe-c--cCCceEEEecCCCCceEEEeCCCCC---------ccEEEEecCCCeEEEEcC-----
Confidence 3467789999888886653 2 234677777 444444444322111 147888888887877522
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|+++++++...+.+. ...-..+..+++.|++..
T Consensus 136 --------------------------------------~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~---- 172 (349)
T 3v64_C 136 --------------------------------------GTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGT---- 172 (349)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTE----
T ss_pred --------------------------------------CCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCe----
Confidence 2358999999887666552 122235678899998876
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+++-+.. ...|+++++ ++...+.+.. ........+|+|+++.|+|...
T Consensus 173 ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 173 IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEEEECSS-------------SCEEEEEET-----------------TSCSCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence 77765321 247999998 5555555433 3334678899999999998875
Q ss_pred CCCCCCCCccccccceeeecCCCC
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.. ..|+++|+++..
T Consensus 223 ~~----------~~I~~~~~dG~~ 236 (349)
T 3v64_C 223 KH----------HVIERANLDGSH 236 (349)
T ss_dssp TT----------TEEEEEETTSCS
T ss_pred CC----------CEEEEEeCCCCc
Confidence 42 479999987643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00029 Score=74.52 Aligned_cols=161 Identities=9% Similarity=0.078 Sum_probs=103.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....++|.+.+..|.++ +. ....|+.+. +++....++....... .++++.+.+..|++...
T Consensus 116 ~~~~gl~~d~~~~~ly~~-D~--~~~~I~r~~~~g~~~~~~~~~~~~~p---------~glavd~~~g~lY~~d~----- 178 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWS-DV--TLDRILRANLNGSNVEEVVSTGLESP---------GGLAVDWVHDKLYWTDS----- 178 (386)
T ss_dssp SCEEEEEEETTTTEEEEE-ET--TTTEEEEEETTSCCEEEEECSSCSCC---------CCEEEETTTTEEEEEET-----
T ss_pred CccEEEEEecCCCeEEEE-eC--CCCcEEEEecCCCCcEEEEeCCCCCc---------cEEEEEeCCCeEEEEcC-----
Confidence 446778999988888665 32 234688877 4444334433221111 47888888887777522
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~ 256 (771)
....|+++++++...+.+ .... ..+..++..|++..
T Consensus 179 --------------------------------------~~~~I~~~~~dg~~~~~l--~~~~l~~P~giavdp~~g~--- 215 (386)
T 3v65_B 179 --------------------------------------GTSRIEVANLDGAHRKVL--LWQSLEKPRAIALHPMEGT--- 215 (386)
T ss_dssp --------------------------------------TTTEEEECBTTSCSCEEE--ECSSCSCEEEEEEETTTTE---
T ss_pred --------------------------------------CCCeEEEEeCCCCceEEe--ecCCCCCCcEEEEEcCCCe---
Confidence 225788888887765555 2322 35678899998876
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+++-+.. ...|+++++ ++...+.+. ........++|+|++++|+|..
T Consensus 216 -ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 216 -IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp -EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred -EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 77664321 247999998 554444443 3333467899999999999887
Q ss_pred cCCCCCCCCccccccceeeecCCCC
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
... ..|+++|+++..
T Consensus 265 ~~~----------~~I~~~d~dG~~ 279 (386)
T 3v65_B 265 AKH----------HVIERANLDGSH 279 (386)
T ss_dssp TTT----------TEEEEECTTSCS
T ss_pred CCC----------CEEEEEeCCCCe
Confidence 542 579999987543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00033 Score=74.46 Aligned_cols=182 Identities=8% Similarity=-0.055 Sum_probs=109.7
Q ss_pred ceEEEEEccC----CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 218 PSLFVININS----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~----~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|+.+++++ .....+. ...-..+..+++.+.++. |+++-. ....|+++++
T Consensus 134 ~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~~~----lY~~d~--------------~~~~I~~~~~------ 188 (400)
T 3p5b_L 134 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 188 (400)
T ss_dssp TEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTTTE----EEEEET--------------TTTEEEEECT------
T ss_pred CeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecCCc----eEEEEC--------------CCCeEEEEeC------
Confidence 5788888876 2333331 122234567788877776 776641 2237899997
Q ss_pred hhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004149 294 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++...+.+.. ........++.|.+..|+|..... ...|+++++++...+.+...
T Consensus 189 -----------~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~~~~~----- 243 (400)
T 3p5b_L 189 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE----- 243 (400)
T ss_dssp -----------TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS---------SCCEEEEETTSCSCEEEECS-----
T ss_pred -----------CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC---------CCEEEEEeCCCCccEEEEEC-----
Confidence 5555444433 334467789999989898876432 24699999876443222110
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEEE
Q 004149 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~ 451 (771)
.-. .+..+++++++++||++-. ....|++++++++..+.+..... ...-..++.+++.||.+.
T Consensus 244 -------~l~-------~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 244 -------NIQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp -------SCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred -------CCC-------ceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 001 1346788888888988743 44579999998777666654322 112235666888888877
Q ss_pred eCCCCCCeEEEEEeccc
Q 004149 452 SSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 452 s~~~~p~~l~~~~~~~~ 468 (771)
.. ...|++++..++
T Consensus 308 ~~---~~~V~~~~~~~G 321 (400)
T 3p5b_L 308 II---NEAIFSANRLTG 321 (400)
T ss_dssp SS---SCSEEEEESSSC
T ss_pred CC---CCeEEEEEcCCC
Confidence 33 345777764444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00038 Score=74.30 Aligned_cols=158 Identities=11% Similarity=0.160 Sum_probs=89.6
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 104 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
++|+|+|+.|++. +.. +...++.+. .++...+.. ...... .....+++++|++..|++. ..
T Consensus 176 ia~~~~g~~l~~~-d~~-~~~~I~~~d~~~~~~~~~~g~~~~~~------~~~p~~iav~p~~g~lyv~-d~-------- 238 (409)
T 3hrp_A 176 PAVTKDKQRVYSI-GWE-GTHTVYVYMKASGWAPTRIGQLGSTF------SGKIGAVALDETEEWLYFV-DS-------- 238 (409)
T ss_dssp CEECTTSSEEEEE-BSS-TTCEEEEEEGGGTTCEEEEEECCTTS------CSCCCBCEECTTSSEEEEE-CT--------
T ss_pred eeEecCCCcEEEE-ecC-CCceEEEEEcCCCceeEEeeeccchh------cCCcEEEEEeCCCCeEEEE-EC--------
Confidence 8999999987554 332 223688877 333322222 111100 0112588999966667663 21
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC---CCCC-Cccc-eEEEecCCCCCcc
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG---IPKS-LSVG-QVVWAPLNEGLHQ 256 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~---~~~~-~~~~-~~~wspDg~~~~~ 256 (771)
...|+++|.+++....+.+ .... ..+. .++|+|++..
T Consensus 239 -----------------------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~--- 280 (409)
T 3hrp_A 239 -----------------------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN--- 280 (409)
T ss_dssp -----------------------------------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE---
T ss_pred -----------------------------------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE---
Confidence 2579999998887655410 1111 1223 8999997765
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC---------------Cccccc
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---------------ISSAFF 321 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~---------------~~~~~~ 321 (771)
|+++. . ....|++++. ++. ...+... ......
T Consensus 281 -lyv~d-~-------------~~~~I~~~~~-----------------~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 281 -FYMSD-Q-------------NLSSVYKITP-----------------DGE-CEWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp -EEEEE-T-------------TTTEEEEECT-----------------TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred -EEEEe-C-------------CCCEEEEEec-----------------CCC-EEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 66553 1 2336888876 221 2222111 123567
Q ss_pred eeecCCCCEEEEEec-CCCCCCCCccccccceeeecCCCC
Q 004149 322 PRFSPDGKFLVFLSA-KSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 322 p~~SpDG~~l~f~~~-~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+++|||+ |++... . ..+|+++++.++.
T Consensus 328 ia~d~dG~-lyvad~~~----------~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 328 MTVDEDGN-FYIVDGFK----------GYCLRKLDILDGY 356 (409)
T ss_dssp EEECTTCC-EEEEETTT----------TCEEEEEETTTTE
T ss_pred EEEeCCCC-EEEEeCCC----------CCEEEEEECCCCE
Confidence 88999998 665543 3 3568899876554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00063 Score=69.72 Aligned_cols=160 Identities=9% Similarity=0.026 Sum_probs=101.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcc-eEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
......|.+.+..|.++ +. ....|+.+. +++.. ..+.... ... .++++.+.+..|++.-.
T Consensus 36 ~~~~ld~d~~~~~lyw~-D~--~~~~I~r~~~~g~~~~~~~~~~~l~~p----------~glavd~~~g~ly~~d~---- 98 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWS-DV--SEEAIKRTEFNKTESVQNVVVSGLLSP----------DGLACDWLGEKLYWTDS---- 98 (318)
T ss_dssp EEEEEEEEGGGTEEEEE-ET--TTTEEEEEETTSSSCCCEEEEECCSCC----------CEEEEETTTTEEEEEET----
T ss_pred ccEEEEEEeCCCEEEEE-EC--CCCcEEEEEccCCCceEEEEcCCCCCc----------cEEEEEcCCCeEEEEEC----
Confidence 45678899988888665 33 234677777 44322 2222221 112 47888887877766421
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
....|.++++++...+.+. ...-..+..++..|++..
T Consensus 99 ---------------------------------------~~~~I~~~~~dG~~~~~l~-~~~~~~P~giavdp~~g~--- 135 (318)
T 3sov_A 99 ---------------------------------------ETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGF--- 135 (318)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEEGGGTE---
T ss_pred ---------------------------------------CCCEEEEEECCCCcEEEEE-eCCCCCccEEEEeCCCCE---
Confidence 2367899999887666552 122335678889998776
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+++-+. ....|+++++ ++...+.+ ..........+|+|+++.|+|..
T Consensus 136 -ly~td~~-------------~~~~I~r~~~-----------------dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 136 -MYWTDWG-------------EVPKIERAGM-----------------DGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp -EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEecC-------------CCCEEEEEEc-----------------CCCCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 7665431 1247999998 55444444 33334467889999999999987
Q ss_pred cCCCCCCCCccccccceeeecCCCC
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
... ..|+++|+++..
T Consensus 185 ~~~----------~~I~~~d~dG~~ 199 (318)
T 3sov_A 185 AKL----------NFIHKSNLDGTN 199 (318)
T ss_dssp TTT----------TEEEEEETTSCS
T ss_pred CCC----------CEEEEEcCCCCc
Confidence 543 579999987644
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00032 Score=75.91 Aligned_cols=264 Identities=15% Similarity=0.128 Sum_probs=138.4
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
.++++|++|+..+..+ .+.+|+ .++....+. +..+. +..+.|+ ++.|+..+.+.... .|+
T Consensus 124 ~~~~~g~~l~sg~~dg-----~i~vwd~~~~~~~~~~~---~h~~~------v~~~~~~--~~~l~s~~~dg~i~--vwd 185 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDN-----TLKVWSAVTGKCLRTLV---GHTGG------VWSSQMR--DNIIISGSTDRTLK--VWN 185 (445)
T ss_dssp EEEEETTEEEEEETTS-----CEEEEETTTCCEEEECC---CCSSC------EEEEEEE--TTEEEEEETTSCEE--EEE
T ss_pred EEEEcCCEEEEEECCC-----cEEEEECCCCcEEEEEc---CCCCC------EEEEEec--CCEEEEEeCCCeEE--EEE
Confidence 5788899998776543 455663 333222222 11111 2567776 55677766554332 233
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
............+........+.+ ...+++.....|.+||+.+++..... ......+..+.| ||+. |+..+
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRR----VVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSC----EEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCE----EEEEc
Confidence 221111111111222222333432 23555667789999999988765441 223334556666 7887 77665
Q ss_pred ecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCC
Q 004149 263 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVD 341 (771)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~ 341 (771)
.+..|.++|+ .+++ ...+..+...+....| ||+.|+..+.+.
T Consensus 257 ---------------~dg~i~iwd~-----------------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~--- 299 (445)
T 2ovr_B 257 ---------------YDFMVKVWDP-----------------ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT--- 299 (445)
T ss_dssp ---------------TTSCEEEEEG-----------------GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS---
T ss_pred ---------------CCCEEEEEEC-----------------CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC---
Confidence 3347888887 4443 3455555566777777 889888777553
Q ss_pred CCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 342 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 342 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
.|.+||+.+++........ .....+++++++.| ++...++...+ +|+.
T Consensus 300 --------~i~i~d~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~l-~~~~~dg~i~v--wd~~ 347 (445)
T 2ovr_B 300 --------SIRVWDVETGNCIHTLTGH---------------------QSLTSGMELKDNIL-VSGNADSTVKI--WDIK 347 (445)
T ss_dssp --------CEEEEETTTCCEEEEECCC---------------------CSCEEEEEEETTEE-EEEETTSCEEE--EETT
T ss_pred --------eEEEEECCCCCEEEEEcCC---------------------cccEEEEEEeCCEE-EEEeCCCeEEE--EECC
Confidence 4889998876532110000 01112345567644 55555555444 5777
Q ss_pred CCcEEEecCC-C-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 422 SGELLRITPA-E-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 422 tg~~~~l~~~-~-~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+++....... . .......++.+++.++....+ ..|.+.++.++
T Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d----g~v~iwd~~~~ 392 (445)
T 2ovr_B 348 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD----GTVKLWDLKTG 392 (445)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT----SEEEEEETTTC
T ss_pred CCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC----CeEEEEECCCC
Confidence 7775544332 1 111223444466655544422 34666665443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=8.7e-05 Score=80.16 Aligned_cols=185 Identities=10% Similarity=0.088 Sum_probs=103.9
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 104 VVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.++++||++|+.....+ .+.+| ..++......... +. +.+++| |++.|+..+.+.... .|
T Consensus 137 ~~~~~d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~h~---~~------v~~l~~--~~~~l~sg~~dg~i~--vw 198 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDN-----TIKIWDKNTLECKRILTGHT---GS------VLCLQY--DERVIITGSSDSTVR--VW 198 (435)
T ss_dssp EEEECCSSEEEEEESSS-----CEEEEESSSCCEEEEECCCS---SC------EEEEEC--CSSEEEEEETTSCEE--EE
T ss_pred EEEEECCCEEEEEeCCC-----eEEEEeCCCCeEEEEEcCCC---Cc------EEEEEE--CCCEEEEEcCCCeEE--EE
Confidence 45667999998776543 35555 2333333332111 11 246666 888888877665432 33
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee----eccCCCCCCccceEEEecCCCCCccE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ----AVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~----~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
+............+........|.+ +..+++.....|.+||+.+++.. .+ ......+..+.| |++.
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~--~~~~---- 268 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVDF--DDKY---- 268 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEE--CCCSSCEEEEEE--ETTE----
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEe--cCCCCcEEEEEe--CCCE----
Confidence 3222211111112222222333432 34556667789999999887643 23 233445566666 7776
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ .+..|.++|+ .+++ ...+..+...+....| +|+.|+..+.
T Consensus 269 l~s~~---------------~dg~i~vwd~-----------------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~ 314 (435)
T 1p22_A 269 IVSAS---------------GDRTIKVWNT-----------------STCEFVRTLNGHKRGIACLQY--RDRLVVSGSS 314 (435)
T ss_dssp EEEEE---------------TTSEEEEEET-----------------TTCCEEEEEECCSSCEEEEEE--ETTEEEEEET
T ss_pred EEEEe---------------CCCeEEEEEC-----------------CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC
Confidence 66654 3347888897 4444 3455555556666666 5777776665
Q ss_pred CCCCCCCCccccccceeeecCCCCC
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+ ..|.+||+.+++.
T Consensus 315 d-----------g~i~iwd~~~~~~ 328 (435)
T 1p22_A 315 D-----------NTIRLWDIECGAC 328 (435)
T ss_dssp T-----------SCEEEEETTTCCE
T ss_pred C-----------CeEEEEECCCCCE
Confidence 4 3588999887653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0011 Score=68.01 Aligned_cols=161 Identities=11% Similarity=0.109 Sum_probs=100.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC----CcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ----SQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....+.|++++.+|.++-. ....|+.+. ++ .....++... ... .++++.+.+..|++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~---~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p----------~glavd~~~~~ly~~d~ 96 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAP----------DGLAVDWIHSNIYWTDS 96 (316)
T ss_dssp SSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSSCSCC----------CEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEEC---CCCcEEEEECCCCCCCcccEEEEeCCCCCc----------CEEEEeecCCeEEEEEC
Confidence 44678999999888866543 234677777 33 2223333211 111 47888887777766522
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|.++++++...+.+. ...-..+..++..|++.
T Consensus 97 -------------------------------------------~~~~I~~~~~~g~~~~~~~-~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 97 -------------------------------------------VLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHG 132 (316)
T ss_dssp -------------------------------------------TTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTT
T ss_pred -------------------------------------------CCCEEEEEeCCCCceEEEE-ECCCCCcceEEeCCCCC
Confidence 2367889998877666552 11223567888999887
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l 331 (771)
. |+++.+. ....|+++++ ++...+.+. .........+|+|++++|
T Consensus 133 ~----ly~~d~~-------------~~~~I~~~~~-----------------dG~~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 133 F----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp E----EEEEECS-------------SSCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred E----EEEEccC-------------CCCeEEEEcC-----------------CCCCeEEEEECCCCCceEEEEeccCCEE
Confidence 6 7766421 1237999997 444444442 233446678999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
+|..... ..|+++|+++..
T Consensus 179 Y~~D~~~----------~~I~~~d~dg~~ 197 (316)
T 1ijq_A 179 YWVDSKL----------HSISSIDVNGGN 197 (316)
T ss_dssp EEEETTT----------TEEEEEETTSCS
T ss_pred EEEECCC----------CeEEEEecCCCc
Confidence 9887543 579999987543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0011 Score=66.41 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=57.5
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
.....+++||+.|+..... ..|+.+|.+ |+..-. +.. .. .....+..+
T Consensus 127 ~~~v~~~~~G~~lv~~~~~-----------~~v~~~d~~-G~~~w~----------~~~--~~--------~~~~~~~~~ 174 (276)
T 3no2_A 127 FRQINKNKKGNYLVPLFAT-----------SEVREIAPN-GQLLNS----------VKL--SG--------TPFSSAFLD 174 (276)
T ss_dssp CSCCEECTTSCEEEEETTT-----------TEEEEECTT-SCEEEE----------EEC--SS--------CCCEEEECT
T ss_pred ccCceECCCCCEEEEecCC-----------CEEEEECCC-CCEEEE----------EEC--CC--------CccceeEcC
Confidence 3445789999977644322 358888876 443110 000 00 122345678
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCC--C----CceeeEEeecCCEEEEEEeCCC------CCCeEEEEE
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAE--S----NFSWSLLTLDGDNIIAVSSSPV------DVPQVKYGY 464 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~--~----~~~~~~~s~d~~~l~~~~s~~~------~p~~l~~~~ 464 (771)
+|..|+. ... ...|+.+|.++|++.. +.... + ........++|+.++..+.+.. ...+++-++
T Consensus 175 ~g~~~v~-~~~--~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~ 250 (276)
T 3no2_A 175 NGDCLVA-CGD--AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEID 250 (276)
T ss_dssp TSCEEEE-CBT--TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEEC
T ss_pred CCCEEEE-eCC--CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEEC
Confidence 8885543 332 2369999999887653 32211 1 1222344556665555443432 244566544
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00043 Score=68.93 Aligned_cols=134 Identities=8% Similarity=-0.009 Sum_probs=73.3
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|++++..+....... ......+..++++|||+ |+++.. ....|++++.
T Consensus 129 ~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 178 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGN-----VYVTDT--------------DNNRVVKLEA---------- 178 (270)
T ss_dssp TEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred CEEEEEECCCceeEeec-cccCCCceeEEEeCCCC-----EEEEEC--------------CCCEEEEEec----------
Confidence 56777876554443331 11223567889999986 665541 1237889987
Q ss_pred hhhcCCCCCCcceecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 298 ELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
.+......... ........+++|| .|++.... ...|++++..+........
T Consensus 179 -------~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~----------~~~v~~~~~~~~~~~~~~~---------- 230 (270)
T 1rwi_B 179 -------ESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHN----------TNQVVKLLAGSTTSTVLPF---------- 230 (270)
T ss_dssp -------TTCCEEECCCSSCCSEEEEEECTTC-CEEEEETT----------TSCEEEECTTCSCCEECCC----------
T ss_pred -------CCCceEeecccCCCCceEEEECCCC-CEEEEECC----------CCcEEEEcCCCCcceeecc----------
Confidence 44443333222 2446678999999 45554432 2458888876533211100
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
..+ ..+..+++++||+ |+++....+. |..+++.
T Consensus 231 ----~~~-----~~p~~i~~~~~g~-l~v~~~~~~~--v~~~~~~ 263 (270)
T 1rwi_B 231 ----TGL-----NTPLAVAVDSDRT-VYVADRGNDR--VVKLTSL 263 (270)
T ss_dssp ----CSC-----SCEEEEEECTTCC-EEEEEGGGTE--EEEECCC
T ss_pred ----CCC-----CCceeEEECCCCC-EEEEECCCCE--EEEEcCC
Confidence 000 1234567888986 7666554443 4444443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0036 Score=62.83 Aligned_cols=175 Identities=6% Similarity=-0.037 Sum_probs=94.9
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|+++|.++.....+. ......+..++++|||+ |+++.. ....|++++.
T Consensus 100 ~~i~~~d~~g~~~~~~~-~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 149 (286)
T 1q7f_A 100 HQIQIYNQYGQFVRKFG-ATILQHPRGVTVDNKGR-----IIVVEC--------------KVMRVIIFDQ---------- 149 (286)
T ss_dssp CEEEEECTTSCEEEEEC-TTTCSCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred CEEEEECCCCcEEEEec-CccCCCceEEEEeCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 57888885554444442 22223567889999986 665531 2237888885
Q ss_pred hhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 298 ELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.....+. .........+++|||+ |++.... ...|+++|..+.....+
T Consensus 150 -------~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~g~~~~~~----------- 200 (286)
T 1q7f_A 150 -------NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR----------AHCVKVFNYEGQYLRQI----------- 200 (286)
T ss_dssp -------TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG----------GTEEEEEETTCCEEEEE-----------
T ss_pred -------CCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC----------CCEEEEEcCCCCEEEEE-----------
Confidence 433333332 2223467889999998 4444322 24688888643211111
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEEEEeC
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~d~~~l~~~~s~ 453 (771)
.. .+.+ ..+..+++++||+ |+++....+ ..|.+++.++..+..+..... ......++++|+ ++++ +.
T Consensus 201 ~~--~g~~-----~~p~~i~~d~~G~-l~v~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~ 269 (286)
T 1q7f_A 201 GG--EGIT-----NYPIGVGINSNGE-ILIADNHNN-FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGS-VVLA-SK 269 (286)
T ss_dssp SC--TTTS-----CSEEEEEECTTCC-EEEEECSSS-CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ET
T ss_pred cc--CCcc-----CCCcEEEECCCCC-EEEEeCCCC-EEEEEECCCCCEEEEEcccCCCCcceeEEECCCCc-EEEE-CC
Confidence 00 0101 1234577899996 555543222 257777875555555543322 123456777775 5555 32
Q ss_pred CCCCCeEEEEEe
Q 004149 454 PVDVPQVKYGYF 465 (771)
Q Consensus 454 ~~~p~~l~~~~~ 465 (771)
+ .+|.+.+.
T Consensus 270 -~--~~v~v~~~ 278 (286)
T 1q7f_A 270 -D--YRLYIYRY 278 (286)
T ss_dssp -T--TEEEEEEC
T ss_pred -C--CeEEEEEc
Confidence 2 45666554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00092 Score=68.45 Aligned_cols=181 Identities=11% Similarity=0.003 Sum_probs=109.8
Q ss_pred ceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 218 PSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|++++++++.. +.+. ...-..+..+++.+.+.. |+++-. ....|+++++
T Consensus 57 ~~I~r~~~~g~~~~~~~~-~~~l~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~--------- 108 (318)
T 3sov_A 57 EAIKRTEFNKTESVQNVV-VSGLLSPDGLACDWLGEK----LYWTDS--------------ETNRIEVSNL--------- 108 (318)
T ss_dssp TEEEEEETTSSSCCCEEE-EECCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CcEEEEEccCCCceEEEE-cCCCCCccEEEEEcCCCe----EEEEEC--------------CCCEEEEEEC---------
Confidence 6788899887642 1220 112224567888887776 776541 2237899997
Q ss_pred hhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++...+.+. .........++.|++..|+|..... ...|+++++++...+.+...
T Consensus 109 --------dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~-------- 163 (318)
T 3sov_A 109 --------DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE---------VPKIERAGMDGSSRFIIINS-------- 163 (318)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS---------SCEEEEEETTSCSCEEEECS--------
T ss_pred --------CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---------CCEEEEEEcCCCCeEEEEEC--------
Confidence 555444443 3344567788999888888876432 25699999876443221100
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
.-. ....++|++++++||++-. ....|+++++++...+.+..... ..-..++.+++.+|.+..
T Consensus 164 ----~l~-------~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~-~~P~glav~~~~lywtd~--- 226 (318)
T 3sov_A 164 ----EIY-------WPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSL-PHPFALTLFEDILYWTDW--- 226 (318)
T ss_dssp ----SCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCC-SCEEEEEEETTEEEEEET---
T ss_pred ----CCC-------CccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCC-CCceEEEEeCCEEEEEec---
Confidence 001 1346789998888988754 44578999998766665554222 122345557778877743
Q ss_pred CCCeEEEEEeccc
Q 004149 456 DVPQVKYGYFVDK 468 (771)
Q Consensus 456 ~p~~l~~~~~~~~ 468 (771)
....|++++..++
T Consensus 227 ~~~~V~~~~~~~G 239 (318)
T 3sov_A 227 STHSILACNKYTG 239 (318)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCeEEEEECCCC
Confidence 3456777775444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0011 Score=70.27 Aligned_cols=162 Identities=10% Similarity=0.097 Sum_probs=101.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
.....++|++.+..|.++.. ....|+.+...+ ....++...... ..++++.+.+..|++...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~---~~~~I~~~~~~g~~~~~~~~~~~~~~~~~---------p~glavD~~~~~lY~~d~- 178 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQA---------PDGLAVDWIHSNIYWTDS- 178 (400)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEEC------CCCEEEECSSCSC---------EEEEEEETTTTEEEEEET-
T ss_pred CcceEEeeeeccCceEEEec---CCCeEEEEEcccCCCCCcceEEEeCCCCC---------cccEEEEecCCceEEEEC-
Confidence 45678899998888866533 234577766322 223333211111 147778887777766521
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCC
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNE 252 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~ 252 (771)
....|.++++++...+.+ ... -..+..++..|.+.
T Consensus 179 ------------------------------------------~~~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~g 214 (400)
T 3p5b_L 179 ------------------------------------------VLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHG 214 (400)
T ss_dssp ------------------------------------------TTTEEEEECTTTCSEEEE--EECSSCCEEEEEEETTTT
T ss_pred ------------------------------------------CCCeEEEEeCCCCceEEE--EeCCCCCcceEEEecccC
Confidence 235788999988776666 332 23467789999877
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l 331 (771)
. |+++-+. ....|+++++ ++...+.+. .........+++|+++.|
T Consensus 215 ~----ly~td~~-------------~~~~I~~~~~-----------------dG~~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 215 F----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp E----EEEEECS-------------SSCCEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred e----EEEEeCC-------------CCCEEEEEeC-----------------CCCccEEEEECCCCceEEEEEEeCCCEE
Confidence 6 7665432 1237999998 555544443 333456788999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+|..... ..|+++|+++...
T Consensus 261 Y~aD~~~----------~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 261 YWVDSKL----------HSISSIDVNGGNR 280 (400)
T ss_dssp EEEETTT----------TEEEEEETTSCCC
T ss_pred EEEECCC----------CEEEEEeCCCCcc
Confidence 9987542 5799999876443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00029 Score=68.59 Aligned_cols=178 Identities=13% Similarity=0.181 Sum_probs=105.9
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.++|+++|++..-...+ ........+++|++ |+...|. ...++++|.
T Consensus 64 ~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~----ly~ltw~--------------~~~v~v~D~--------- 114 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQIELG--KRYFGEGISDWKDK----IVGLTWK--------------NGLGFVWNI--------- 114 (262)
T ss_dssp EEEEEEECTTTCCEEEEEECC--TTCCEEEEEEETTE----EEEEESS--------------SSEEEEEET---------
T ss_pred CceEEEEECCCCcEEEEEecC--CccceeEEEEeCCE----EEEEEee--------------CCEEEEEEC---------
Confidence 368999999999876552122 23333446677887 8777653 337999998
Q ss_pred hhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.+. .++.-.. ....+++||+.|+. ++. ..+|+++|.++.+... .+.+.
T Consensus 115 --------~t~~~~~ti~~~~---eG~glt~dg~~L~~-SdG----------s~~i~~iDp~T~~v~~-------~I~V~ 165 (262)
T 3nol_A 115 --------RNLRQVRSFNYDG---EGWGLTHNDQYLIM-SDG----------TPVLRFLDPESLTPVR-------TITVT 165 (262)
T ss_dssp --------TTCCEEEEEECSS---CCCCEEECSSCEEE-CCS----------SSEEEEECTTTCSEEE-------EEECE
T ss_pred --------ccCcEEEEEECCC---CceEEecCCCEEEE-ECC----------CCeEEEEcCCCCeEEE-------EEEec
Confidence 55543 3333221 33466789987654 432 2569999988755311 11111
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-------------CCceeeEEee
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-------------SNFSWSLLTL 442 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-------------~~~~~~~~s~ 442 (771)
.. ...+ ..+..+.|. || +|++. .+. ...|.+||+++|++.....-. ......++++
T Consensus 166 ~~--g~~~-----~~lNELe~~-~G-~lyan-~w~-~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 166 AH--GEEL-----PELNELEWV-DG-EIFAN-VWQ-TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp ET--TEEC-----CCEEEEEEE-TT-EEEEE-ETT-SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred cC--Cccc-----cccceeEEE-CC-EEEEE-Ecc-CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 00 0001 012235676 66 46543 333 347999999999987553321 1234578899
Q ss_pred cCCEEEEEEeCCCCCCeEEEEEec
Q 004149 443 DGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 443 d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+++.|+.+.-.. +.+|.+.+.
T Consensus 235 ~~~~lfVTGK~W---p~~~ev~~~ 255 (262)
T 3nol_A 235 EHHRLFVTGKLW---PKVFEITLT 255 (262)
T ss_dssp TTTEEEEEETTC---SEEEEEEEE
T ss_pred CCCEEEEECCCC---CceEEEEEe
Confidence 999999888766 557766654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.85 E-value=9.7e-05 Score=84.57 Aligned_cols=179 Identities=8% Similarity=-0.037 Sum_probs=104.5
Q ss_pred ceEEEEEccC----CceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 218 PSLFVININS----GEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 218 ~~l~v~d~~~----~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..|+++++++ .....+ ... -..+..+++.+.+.. |+++-. ....|+++++
T Consensus 428 ~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~glavD~~~g~----LY~tD~--------------~~~~I~v~d~----- 482 (699)
T 1n7d_A 428 RMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT----- 482 (699)
T ss_dssp TSBEEEESCCCCC-CCCCCB--CCSCC--CCCEECCCSSSB----CEECCT--------------TTSCEEEEBS-----
T ss_pred CeEEEEecCCCCCCcceEEE--EeCCCCCcceEEEEeeCCc----EEEEec--------------cCCeEEEEec-----
Confidence 5678888875 333333 222 124556777766666 665431 2237899987
Q ss_pred hhhhhhhhcCCCCCCcceecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 293 EASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++...+.+... .......+++|++.+|+|..... ...|+++++.+...+.+...
T Consensus 483 ------------dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~l~~~---- 537 (699)
T 1n7d_A 483 ------------KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE---- 537 (699)
T ss_dssp ------------SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS---------SCCEEBCCSSSCCCCEESCS----
T ss_pred ------------CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC---------CCeEEEEeCCCCCeeEEEeC----
Confidence 55555554432 34467789999988888766321 24688888765433211100
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEE
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~ 450 (771)
... ....++|++++++||++.. ....|+++++++...+.+..... ...-..++.+++.||++
T Consensus 538 --------~l~-------~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywt 600 (699)
T 1n7d_A 538 --------NIQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 600 (699)
T ss_dssp --------SCS-------SCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEE
T ss_pred --------CCC-------CccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEE
Confidence 001 2357889999888988753 44578899987766666654221 11122455577777766
Q ss_pred EeCCCCCCeEEEEEec
Q 004149 451 SSSPVDVPQVKYGYFV 466 (771)
Q Consensus 451 ~s~~~~p~~l~~~~~~ 466 (771)
.. ...+|++++..
T Consensus 601 d~---~~~~V~~~d~~ 613 (699)
T 1n7d_A 601 DI---INEAIFSANRL 613 (699)
T ss_dssp CS---TTTCEEEEETT
T ss_pred eC---CCCeEEEEEcc
Confidence 63 23457777643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.003 Score=72.72 Aligned_cols=182 Identities=8% Similarity=-0.054 Sum_probs=109.4
Q ss_pred ceEEEEEccCC----ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 218 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~----~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|+++++++. ..+.+. ...-..+..+++.+.++. |+++-. ....|+++++
T Consensus 446 ~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~~~----LY~tD~--------------~~~~I~v~~l------ 500 (791)
T 3m0c_C 446 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 500 (791)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET------
T ss_pred eeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecCCc----EEEEec--------------CCCeEEEEeC------
Confidence 57888888763 333331 112335667888888886 777642 2337999998
Q ss_pred hhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004149 294 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++...+.|.. ........++.|.+..|+|..... ..+|+++++++...+.+...
T Consensus 501 -----------dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~---------~~~I~~~~~dG~~~~~lv~~----- 555 (791)
T 3m0c_C 501 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE----- 555 (791)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECS-----
T ss_pred -----------CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC---------CCeEEEEecCCCceEEEEeC-----
Confidence 5555555443 334577889999988898887432 24699999876443221110
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEEE
Q 004149 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~ 451 (771)
.-. .+..+++.+++++||++- .....|+++++++...+.+..... ...-..++.+++.||++-
T Consensus 556 -------~l~-------~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 556 -------NIQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp -------SCS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred -------CCC-------CceEEEEecCCCeEEEEe--CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence 000 123566777778888874 344579999998777776654322 122245667788887766
Q ss_pred eCCCCCCeEEEEEeccc
Q 004149 452 SSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 452 s~~~~p~~l~~~~~~~~ 468 (771)
. ....|++++..++
T Consensus 620 ~---~~~~I~~~dk~tG 633 (791)
T 3m0c_C 620 I---INEAIFSANRLTG 633 (791)
T ss_dssp T---TTTEEEEEETTTC
T ss_pred C---CCCEEEEEeCCCC
Confidence 3 3356777664433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00081 Score=72.46 Aligned_cols=211 Identities=9% Similarity=-0.004 Sum_probs=110.5
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 147 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g 147 (771)
..+.+.++++.... ....+... .+.+...+| ||+.|+.....+ .+.+| ..++........ .+
T Consensus 151 ~dg~i~iwd~~~~~-~~~~~~~h-----~~~v~~l~~--~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~h---~~ 214 (435)
T 1p22_A 151 RDNTIKIWDKNTLE-CKRILTGH-----TGSVLCLQY--DERVIITGSSDS-----TVRVWDVNTGEMLNTLIHH---CE 214 (435)
T ss_dssp SSSCEEEEESSSCC-EEEEECCC-----SSCEEEEEC--CSSEEEEEETTS-----CEEEEESSSCCEEEEECCC---CS
T ss_pred CCCeEEEEeCCCCe-EEEEEcCC-----CCcEEEEEE--CCCEEEEEcCCC-----eEEEEECCCCcEEEEEcCC---CC
Confidence 44567777763321 11222211 244556666 888887765543 34555 333333322211 11
Q ss_pred cccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC---CCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004149 148 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG---SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 148 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
.+..+.|++ ..|+..+.+.... .|+....... .....+......+.| +....+++..+..|.+||
T Consensus 215 ------~v~~l~~~~--~~l~s~s~dg~i~--vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 215 ------AVLHLRFNN--GMMVTCSKDRSIA--VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp ------CEEEEECCT--TEEEEEETTSCEE--EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred ------cEEEEEEcC--CEEEEeeCCCcEE--EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 125777764 4666666554322 2322111111 111112222222333 333455566678999999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCC
Q 004149 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 304 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 304 (771)
+.+++..... ......+..+.| +++. |+..+ .+..|.++|+
T Consensus 283 ~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~g~---------------~dg~i~iwd~----------------- 323 (435)
T 1p22_A 283 TSTCEFVRTL-NGHKRGIACLQY--RDRL----VVSGS---------------SDNTIRLWDI----------------- 323 (435)
T ss_dssp TTTCCEEEEE-ECCSSCEEEEEE--ETTE----EEEEE---------------TTSCEEEEET-----------------
T ss_pred CCcCcEEEEE-cCCCCcEEEEEe--CCCE----EEEEe---------------CCCeEEEEEC-----------------
Confidence 9988765441 223334555566 5554 55544 3347888998
Q ss_pred CCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 305 EDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 305 ~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+++ ...+..+...+....| ||+.|+..+.+. .|.+||+.++.
T Consensus 324 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg-----------~i~vwd~~~~~ 367 (435)
T 1p22_A 324 ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG-----------KIKVWDLVAAL 367 (435)
T ss_dssp TTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTS-----------CEEEEEHHHHT
T ss_pred CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCC-----------cEEEEECCCCC
Confidence 5444 4556656666777777 888887776553 48888886544
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00022 Score=81.64 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=87.8
Q ss_pred CceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 217 QPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...|+++++++...+.+ ... -..+..+++.|++.. |+++.+. ....|+++++
T Consensus 474 ~~~I~v~d~dg~~~~~l--~~~~~~~P~giavDp~~g~----ly~td~~-------------~~~~I~~~~~-------- 526 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTL--FREQGSKPRAIVVDPVHGF----MYWTDWG-------------TPAKIKKGGL-------- 526 (699)
T ss_dssp TSCEEEEBSSSCCEEEE--CCCSSCCCCCEECCSSSSC----CEECCCS-------------SSCCEEBCCS--------
T ss_pred CCeEEEEecCCCceEEE--EeCCCCCcceEEEccCCCc----EEEcccC-------------CCCeEEEEeC--------
Confidence 36789999988877666 333 235678899998887 7765421 1237888887
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 296 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
++...+.+. ........++|+|++++|+|+.... ..|+++++.+...+.+...
T Consensus 527 ---------dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~----------~~I~~~d~dG~~~~~~~~~------- 580 (699)
T 1n7d_A 527 ---------NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL----------HSISSIDVNGGNRKTILED------- 580 (699)
T ss_dssp ---------SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTT----------TEEEEECSSSSCCEEECCC-------
T ss_pred ---------CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCC----------CeEEEEccCCCceEEEEec-------
Confidence 444433332 3333466799999999998887542 5699999875333211110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
...++ ....+++ |+..||++. .....|++++..+|+.....
T Consensus 581 -----~~~~~-----~P~glav--d~~~lywtd--~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 581 -----EKRLA-----HPFSLAV--FEDKVFWTD--IINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp -----SSSCS-----SCCCCEE--ETTEEEEEC--STTTCEEEEETTTEEEEECC
T ss_pred -----CCcCC-----CceEeEE--ECCEEEEEe--CCCCeEEEEEccCCCceEEe
Confidence 00010 1223333 555677665 23346788887777655443
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00019 Score=69.56 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=81.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH------------------HHHHHCCcEEEEECCCCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL------------------AFLSSVGYSLLIVNYRGSL 578 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~------------------~~la~~G~~V~~~d~rG~~ 578 (771)
.+..+..|++.... .....|+|++++|||++.... +.... ..+ .+-..++.+|.+-..
T Consensus 30 ~~~~lFywf~es~~--~~~~~Pl~lwlnGGPGcSS~~-~g~~~E~GP~~v~~~~~~l~~N~~sW-~~~anvlfiDqPvGt 105 (255)
T 1whs_A 30 AGRSLFYLLQEAPE--DAQPAPLVLWLNGGPGCSSVA-YGASEELGAFRVKPRGAGLVLNEYRW-NKVANVLFLDSPAGV 105 (255)
T ss_dssp TTEEEEEEEECCCG--GGCSCCEEEEECCTTTBCTTT-THHHHTSSSEEECGGGCCEEECTTCG-GGTSEEEEECCSTTS
T ss_pred CCcEEEEEEEEecC--CCCCCCEEEEECCCCchHHHH-HHHHhccCCeEecCCCCeeeeCcccc-cccCCEEEEecCCCC
Confidence 46678888876542 335689999999999875322 01100 001 123789999965333
Q ss_pred CCChhhhhcCC-CCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHHhC------CCceeEEEecCCc
Q 004149 579 GFGEEALQSLP-GKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPL 650 (771)
Q Consensus 579 ~~g~~~~~~~~-~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~ 650 (771)
|+......... ........+|+..+++...+ .+.....++.|+|.|+||..+..+|..- .-.++++++.+|+
T Consensus 106 GfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLkGi~ign~~ 185 (255)
T 1whs_A 106 GFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVGNGL 185 (255)
T ss_dssp TTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEEEEEEEEEC
T ss_pred ccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccceEEecCCc
Confidence 44322111000 01112235666666654444 3445567899999999999988877531 2357999999999
Q ss_pred cchhh
Q 004149 651 CNLAL 655 (771)
Q Consensus 651 ~~~~~ 655 (771)
++...
T Consensus 186 ~d~~~ 190 (255)
T 1whs_A 186 IDDYH 190 (255)
T ss_dssp CBHHH
T ss_pred cCHHH
Confidence 88643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0044 Score=69.69 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=107.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.......|.+++..|.++ +. ....|+.+. +++....++...... ..++++.+.++.|++.-.
T Consensus 37 ~~~~~l~~d~~~~~lywt-D~--~~~~I~r~~~~g~~~~~v~~~g~~~---------P~GlAvD~~~~~LY~tD~----- 99 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWT-DI--SLKTISRAFMNGSALEHVVEFGLDY---------PEGMAVDWLGKNLYWADT----- 99 (628)
T ss_dssp SCEEEEEEETTTTEEEEE-ET--TTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTEEEEEET-----
T ss_pred CceEEEEEECCCCEEEEE-EC--CCCeEEEEECCCCCcEEEEeCCCCC---------cceEEEEeCCCEEEEEEC-----
Confidence 346678999998888655 33 234677777 444444444332111 147888888888876521
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.+++++++..+.+. ...-..+..++..|....
T Consensus 100 --------------------------------------~~~~I~v~~~dG~~~~~l~-~~~l~~P~~iavdp~~G~---- 136 (628)
T 4a0p_A 100 --------------------------------------GTNRIEVSKLDGQHRQVLV-WKDLDSPRALALDPAEGF---- 136 (628)
T ss_dssp --------------------------------------TTTEEEEEETTSTTCEEEE-CSSCCCEEEEEEETTTTE----
T ss_pred --------------------------------------CCCEEEEEecCCCcEEEEE-eCCCCCcccEEEccCCCe----
Confidence 2368999999887766662 122235678889987665
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+++-|. ....|+++++ ++...+.+..........++++++++|+|....
T Consensus 137 lY~tD~g-------------~~~~I~r~~~-----------------dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 137 MYWTEWG-------------GKPKIDRAAM-----------------DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCC-------------CCCEEEEEeC-----------------CCCceEEEECCCCCcceEEEccccCEEEEEECC
Confidence 7766432 1348999998 666666655555557788999999999998865
Q ss_pred CCCCCCCccccccceeeecCCCC
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
. ..|+++|+++..
T Consensus 187 ~----------~~I~~~d~dG~~ 199 (628)
T 4a0p_A 187 T----------NLIESSNMLGLN 199 (628)
T ss_dssp T----------TEEEEEETTSCS
T ss_pred C----------CEEEEEcCCCCc
Confidence 3 569999987644
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0017 Score=63.20 Aligned_cols=202 Identities=11% Similarity=0.017 Sum_probs=112.6
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
+...|+ || +| |.+....+...+..++ ..++..+.+.++.... +...+++|.+|+.+..
T Consensus 46 qGL~~~-~~-~L-yestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F----------geGit~~g~~ly~ltw-------- 104 (262)
T 3nol_A 46 EGFFYR-NG-YF-YESTGLNGRSSIRKVDIESGKTLQQIELGKRYF----------GEGISDWKDKIVGLTW-------- 104 (262)
T ss_dssp EEEEEE-TT-EE-EEEEEETTEEEEEEECTTTCCEEEEEECCTTCC----------EEEEEEETTEEEEEES--------
T ss_pred ceEEEE-CC-EE-EEECCCCCCceEEEEECCCCcEEEEEecCCccc----------eeEEEEeCCEEEEEEe--------
Confidence 456777 55 44 6666544566788888 6777766666644331 3345667877765522
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
....++++|.++.++..- .+... .....++||+. |+.
T Consensus 105 -----------------------------------~~~~v~v~D~~t~~~~~t--i~~~~--eG~glt~dg~~----L~~ 141 (262)
T 3nol_A 105 -----------------------------------KNGLGFVWNIRNLRQVRS--FNYDG--EGWGLTHNDQY----LIM 141 (262)
T ss_dssp -----------------------------------SSSEEEEEETTTCCEEEE--EECSS--CCCCEEECSSC----EEE
T ss_pred -----------------------------------eCCEEEEEECccCcEEEE--EECCC--CceEEecCCCE----EEE
Confidence 237899999998876543 22221 23456689986 554
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC--CCccc---cceeecCCCCEEEEE
Q 004149 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE--SISSA---FFPRFSPDGKFLVFL 334 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~--~~~~~---~~p~~SpDG~~l~f~ 334 (771)
++ ....|+.+|. ++.+. .++.- ..... ....|. ||+ |+ .
T Consensus 142 -Sd--------------Gs~~i~~iDp-----------------~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly-a 186 (262)
T 3nol_A 142 -SD--------------GTPVLRFLDP-----------------ESLTPVRTITVTAHGEELPELNELEWV-DGE-IF-A 186 (262)
T ss_dssp -CC--------------SSSEEEEECT-----------------TTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE-E
T ss_pred -EC--------------CCCeEEEEcC-----------------CCCeEEEEEEeccCCccccccceeEEE-CCE-EE-E
Confidence 42 2347999997 55432 23222 11121 234565 774 44 4
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
..-. ...|.++|.++++..... ++..+...... ..+ ....+..++|+|++++||++. ..+..
T Consensus 187 n~w~---------~~~I~vIDp~tG~V~~~I----d~~~L~~~~~~-~~~--~~~vlNGIA~dp~~~~lfVTG--K~Wp~ 248 (262)
T 3nol_A 187 NVWQ---------TNKIVRIDPETGKVTGII----DLNGILAEAGP-LPS--PIDVLNGIAWDKEHHRLFVTG--KLWPK 248 (262)
T ss_dssp EETT---------SSEEEEECTTTCBEEEEE----ECTTGGGGSCS-CCS--SCCCEEEEEEETTTTEEEEEE--TTCSE
T ss_pred EEcc---------CCeEEEEECCCCcEEEEE----ECCcCcccccc-ccC--cCCceEEEEEcCCCCEEEEEC--CCCCc
Confidence 3322 357999999887752110 00000000000 000 001235789999999887764 56678
Q ss_pred EEEEEC
Q 004149 415 IISVNV 420 (771)
Q Consensus 415 l~~~d~ 420 (771)
||.|.+
T Consensus 249 ~~ev~~ 254 (262)
T 3nol_A 249 VFEITL 254 (262)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 887764
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00025 Score=76.62 Aligned_cols=112 Identities=18% Similarity=0.122 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCCCCC--CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh---c-----CCCCccccchhhHHHHHH
Q 004149 536 CDPLIVVLHGGPHSVSL--SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ---S-----LPGKVGSQDVNDVLTAID 605 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~--~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~---~-----~~~~~~~~~~~D~~~~i~ 605 (771)
..|++|++-| -+.... ..-........+.|-.+|..++|- ||.+..- . +..-...+.++|+...++
T Consensus 42 ~gPIfl~~gG-Eg~~~~~~~~~g~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi~ 117 (472)
T 4ebb_A 42 EGPIFFYTGN-EGDVWAFANNSAFVAELAAERGALLVFAEHRY---YGKSLPFGAQSTQRGHTELLTVEQALADFAELLR 117 (472)
T ss_dssp TCCEEEEECC-SSCHHHHHHHCHHHHHHHHHHTCEEEEECCTT---STTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHHH
T ss_pred CCcEEEEECC-CccccccccCccHHHHHHHHhCCeEEEEeccc---ccCCcCCCCCCccccccccCCHHHHHHHHHHHHH
Confidence 3687777744 222100 000112334456799999999997 6655431 1 111122345789999999
Q ss_pred HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 606 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 606 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.........+++++|.|+||.+|+++-.++|+.+.++++.++++
T Consensus 118 ~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 118 ALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp HHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 9887755556799999999999999999999999999888777643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0041 Score=71.61 Aligned_cols=163 Identities=9% Similarity=0.083 Sum_probs=102.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
.....++|.+.+.+|.++ +.. ...|+.+...+ ....++...... ..++++.+.++.|+++-.
T Consensus 424 ~~~~gl~~d~~~~~lY~s-D~~--~~~I~~~~l~g~~~~~~~~~vi~~~l~~---------P~GLAvD~~~~~LY~tD~- 490 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWS-DLS--QRMICSTQLDRAHGVSSYDTVISRDIQA---------PDGLAVDWIHSNIYWTDS- 490 (791)
T ss_dssp SSEEEEEEETTTTEEEEE-ETT--TTEEEEEEC--------CEEEECSSCSC---------CCEEEEETTTTEEEEEET-
T ss_pred CceEEEeecccCCeeEEe-ecc--ceeEEEEeccCCCCCcceeEEEecCCCC---------cceeeeeecCCcEEEEec-
Confidence 446678899888777554 332 34577666332 223333211111 147888888887766521
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
....|+++++++...+.+. ...-..+..++..|.+..
T Consensus 491 ------------------------------------------~~~~I~v~~ldG~~~~~l~-~~~l~~P~gIaVDp~~g~ 527 (791)
T 3m0c_C 491 ------------------------------------------VLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGF 527 (791)
T ss_dssp ------------------------------------------TTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTE
T ss_pred ------------------------------------------CCCeEEEEeCCCCeEEEEE-eCCCCCcceEEEecCCCC
Confidence 2368999999988776662 122234678899998776
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~ 332 (771)
|+++-|. ....|+++++ ++...+.|.. ........+++++++.||
T Consensus 528 ----LYwtD~g-------------~~~~I~~~~~-----------------dG~~~~~lv~~~l~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 528 ----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRLY 573 (791)
T ss_dssp ----EEEEECS-------------SSCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTEEE
T ss_pred ----EEEecCC-------------CCCeEEEEec-----------------CCCceEEEEeCCCCCceEEEEecCCCeEE
Confidence 7766432 1237999998 5555544433 334567789999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|+... ...|+++++.+...
T Consensus 574 waD~~----------~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 574 WVDSK----------LHSISSIDVNGGNR 592 (791)
T ss_dssp EEETT----------TTEEEEEETTSCSC
T ss_pred EEeCC----------CCcEEEEecCCCce
Confidence 98644 25699999876543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0044 Score=69.63 Aligned_cols=205 Identities=10% Similarity=0.037 Sum_probs=122.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.....+.|++.+.+|.++ +.. ...|+.+...+.. ..++...... ..++++.+.++.|++...
T Consensus 40 ~~~~~ld~~~~~~~ly~s-D~~--~~~I~r~~~~g~~~~~~v~~~~~~~---------P~GlAvD~~~~~ly~~d~---- 103 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWS-DVS--EEAIKRTEFNKTESVQNVVVSGLLS---------PDGLACDWLGEKLYWTDS---- 103 (619)
T ss_dssp SCEEEEEEETTTTEEEEE-ETT--TTEEEEEEC-----CEEEECSSCSC---------EEEEEEETTTTEEEEEET----
T ss_pred CceEEEEEEeCCCEEEEE-ECC--CCeEEEEEccCCCceEEEEeCCCCC---------cCeEEEEecCCEEEEEeC----
Confidence 446678999988888554 432 3457776633322 2222221111 148889998887766521
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
....|.++++++...+.+. ...-..+..++..|.+..
T Consensus 104 ---------------------------------------~~~~I~v~~~dG~~~~~l~-~~~l~~P~~Iavdp~~g~--- 140 (619)
T 3s94_A 104 ---------------------------------------ETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGF--- 140 (619)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSCCCCEEEETTTTE---
T ss_pred ---------------------------------------CCCEEEEEECCCCCEEEEE-eCCCCCCceEEEecCCCe---
Confidence 2368999999887766662 122235778899998776
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+|+-|. ....|++.++ ++...+.+. .........++++++++|+|..
T Consensus 141 -ly~tD~g-------------~~~~I~r~~~-----------------dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 141 -MYWTDWG-------------EVPKIERAGM-----------------DGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp -EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred -EEEeccC-------------CCCEEEEEEC-----------------CCCceEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 7776532 1247999998 555444443 3334467789999999999987
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
... ..|+++|+++...+.+.... +. .+..+++. +..||++. .....|
T Consensus 190 ~~~----------~~I~~~~~dG~~~~~~~~~~--------------~~-----~P~gi~~~--~~~ly~td--~~~~~V 236 (619)
T 3s94_A 190 AKL----------NFIHKSNLDGTNRQAVVKGS--------------LP-----HPFALTLF--EDILYWTD--WSTHSI 236 (619)
T ss_dssp TTT----------CCEEEESSSCCEEC----------------------------CCCEEES--SSEEEEEC--TTTCSE
T ss_pred CCC----------CeEEEecCCCCccEEEEeCC--------------CC-----CceEEEEe--CCEEEEec--CCCCEE
Confidence 542 56999998765443332110 00 12344443 33676653 234568
Q ss_pred EEEECCCCcEE
Q 004149 416 ISVNVSSGELL 426 (771)
Q Consensus 416 ~~~d~~tg~~~ 426 (771)
+++|..+|+..
T Consensus 237 ~~~d~~tg~~~ 247 (619)
T 3s94_A 237 LACNKYTGEGL 247 (619)
T ss_dssp EEEESSSCCCC
T ss_pred EEEECCCCccc
Confidence 89998877644
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0032 Score=64.61 Aligned_cols=194 Identities=11% Similarity=-0.030 Sum_probs=98.9
Q ss_pred eEEEEEccCCceeeccCCCC---CCccceEEEec-CCCCCccEEEEEeecCc--ceee-eeeeeccCCceeEEEeccccc
Q 004149 219 SLFVININSGEVQAVKGIPK---SLSVGQVVWAP-LNEGLHQYLVFVGWSSE--TRKL-GIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wsp-Dg~~~~~~l~~~~~~~~--~~~~-g~~~~~~~~~~l~~~d~~~~~ 291 (771)
.|+++|.++++.+.+..... -.....+++.| ||+ |+++..... .+.. ...........|+++|.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-----l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---- 172 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-----VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---- 172 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-----EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET----
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-----EEEECCcccccccccceehcccCCCceEEEEeC----
Confidence 47777877666555421111 12356688999 885 777642210 0000 00000012347999996
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.+++.+.+..........+|+|||+.|++.... ..+|+++++.+.... ....+
T Consensus 173 -------------~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~----------~~~I~~~~~~~~~~~----~~~~~ 225 (322)
T 2fp8_A 173 -------------STKETTLLLKELHVPGGAEVSADSSFVLVAEFL----------SHQIVKYWLEGPKKG----TAEVL 225 (322)
T ss_dssp -------------TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG----------GTEEEEEESSSTTTT----CEEEE
T ss_pred -------------CCCEEEEeccCCccCcceEECCCCCEEEEEeCC----------CCeEEEEECCCCcCC----ccceE
Confidence 556554443322334568999999988776543 246999998753211 11111
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeee--------CCeeEEEEEECCCCcEEEecCCCCC-ce-eeEEe
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--------GSSQVIISVNVSSGELLRITPAESN-FS-WSLLT 441 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~--------~~~~~l~~~d~~tg~~~~l~~~~~~-~~-~~~~s 441 (771)
.. .+| ...++..++|+ |+++... .....|++++.++..+..+....+. .. ...+.
T Consensus 226 ~~---------~~g-----P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 226 VK---------IPN-----PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp EE---------CSS-----EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEE
T ss_pred Ee---------CCC-----CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEE
Confidence 10 111 22456788887 6655543 2245689999864444455433221 11 11222
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 442 LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 442 ~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+++.|++... ....|.++++.
T Consensus 291 ~~~g~L~v~~~---~~~~i~~~~~~ 312 (322)
T 2fp8_A 291 EHDGLLYIGTL---FHGSVGILVYD 312 (322)
T ss_dssp EETTEEEEECS---SCSEEEEEEC-
T ss_pred EeCCEEEEeec---CCCceEEEecc
Confidence 34566766542 23456666654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.011 Score=66.52 Aligned_cols=178 Identities=10% Similarity=-0.022 Sum_probs=112.5
Q ss_pred ceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|+.++++++..+.+ .... ..+..++..+.++. |+++-. ....|.++++
T Consensus 59 ~~I~r~~~~g~~~~~v--~~~g~~~P~GlAvD~~~~~----LY~tD~--------------~~~~I~v~~~--------- 109 (628)
T 4a0p_A 59 KTISRAFMNGSALEHV--VEFGLDYPEGMAVDWLGKN----LYWADT--------------GTNRIEVSKL--------- 109 (628)
T ss_dssp TEEEEEETTSCSCEEE--ECSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CeEEEEECCCCCcEEE--EeCCCCCcceEEEEeCCCE----EEEEEC--------------CCCEEEEEec---------
Confidence 6889999988766665 2222 35677888888887 777642 2347999998
Q ss_pred hhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++...+.|. .........++.|....|+|..... ..+|+++++++...+.+...
T Consensus 110 --------dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~---------~~~I~r~~~dG~~~~~l~~~-------- 164 (628)
T 4a0p_A 110 --------DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG---------KPKIDRAAMDGSERTTLVPN-------- 164 (628)
T ss_dssp --------TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECS--------
T ss_pred --------CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC---------CCEEEEEeCCCCceEEEECC--------
Confidence 555544443 3344567889999888888876432 35799999876554222110
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
.. .+..+++.+++++||++.. ....|++++++++..+.+..... .-..++.+++.||++..
T Consensus 165 -----~~-------~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~--~P~glav~~~~ly~tD~--- 225 (628)
T 4a0p_A 165 -----VG-------RANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLP--HPFGLTQYQDYIYWTDW--- 225 (628)
T ss_dssp -----CS-------SEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCS--CEEEEEEETTEEEEEET---
T ss_pred -----CC-------CcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCC--CceEEEEECCEEEEecC---
Confidence 01 1345678888888988754 44578899997766654432221 22355666778877763
Q ss_pred CCCeEEEEEeccc
Q 004149 456 DVPQVKYGYFVDK 468 (771)
Q Consensus 456 ~p~~l~~~~~~~~ 468 (771)
....|++++..++
T Consensus 226 ~~~~I~~~dk~tg 238 (628)
T 4a0p_A 226 SRRSIERANKTSG 238 (628)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCEEEEEECCCC
Confidence 3346777775444
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00037 Score=74.44 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=76.0
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH---------------------HCCcEEEEECC-C
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS---------------------SVGYSLLIVNY-R 575 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la---------------------~~G~~V~~~d~-r 575 (771)
+..+..|++.... .....|+|+++||||++... + ..|. ..-+.++.+|. +
T Consensus 31 ~~~lfy~f~~s~~--~~~~~Pl~lwlnGGPG~Ss~--~----g~~~e~GP~~~~~~~~~l~~n~~sw~~~~~~lfiDqP~ 102 (452)
T 1ivy_A 31 SKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL--D----GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPA 102 (452)
T ss_dssp TEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTH--H----HHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCST
T ss_pred CCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--H----HHHHhcCCcEEeCCCceeeeCCCcccccccEEEEecCC
Confidence 4668877776432 23467999999999987431 1 1111 13478999996 5
Q ss_pred CCCCCChhhhhcCCCCccc---cchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHh----CCCceeEEEec
Q 004149 576 GSLGFGEEALQSLPGKVGS---QDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAAR 647 (771)
Q Consensus 576 G~~~~g~~~~~~~~~~~~~---~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~p~~~~a~v~~ 647 (771)
|.| +... . ...... ...+|+..++. ++...+.....++.|+|+|+||..+..+|.. .+-.++++++.
T Consensus 103 GtG-fS~~--~--~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ig 177 (452)
T 1ivy_A 103 GVG-FSYS--D--DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVG 177 (452)
T ss_dssp TST-TCEE--S--SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEE
T ss_pred CCC-cCCc--C--CCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEec
Confidence 643 3221 1 111111 12444444443 4444444556889999999999966665542 34568999999
Q ss_pred CCccch
Q 004149 648 NPLCNL 653 (771)
Q Consensus 648 ~p~~~~ 653 (771)
+|+++.
T Consensus 178 n~~~d~ 183 (452)
T 1ivy_A 178 NGLSSY 183 (452)
T ss_dssp SCCSBH
T ss_pred CCccCh
Confidence 998874
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0067 Score=62.40 Aligned_cols=156 Identities=9% Similarity=0.023 Sum_probs=84.8
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|+++|.++|++....+...-..+..++++|||+ |+++.. ....|++++.
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-----l~v~d~--------------~~~~v~~~~~--------- 119 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-----YWVTDV--------------ALHQVFKLDP--------- 119 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-----EEEEET--------------TTTEEEEECT---------
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-----EEEEEC--------------CCCEEEEEeC---------
Confidence 468999999988876552212223567889999997 555531 2347888886
Q ss_pred hhhhcCCCCCC--cceecC---------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004149 297 LELKESSSEDL--PVVNLT---------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 297 ~~~~~~~~~~~--~~~~lt---------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
++. ....+. .........+++|++..|++..... ...|++++.. +......
T Consensus 120 --------~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~---------~~~I~~~~~~-g~~~~~~ 181 (329)
T 3fvz_A 120 --------HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC---------NSRIVQFSPS-GKFVTQW 181 (329)
T ss_dssp --------TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS---------CCEEEEECTT-SCEEEEE
T ss_pred --------CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC---------CCeEEEEcCC-CCEEEEe
Confidence 333 233332 1122466789999444465555311 2468888843 3321110
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
..... -.......| ..+..++++||+..||++... ...|.+++.++|+.....
T Consensus 182 ~~~g~----~~~~~~~~~-----~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 182 GEESS----GSSPRPGQF-----SVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEECC----SSSCCTTEE-----SCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCEEEEE
T ss_pred ccCCC----CCCCCCccc-----CCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcEEEEE
Confidence 00000 000000011 123467889996667776543 346777788877765443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.014 Score=58.51 Aligned_cols=274 Identities=9% Similarity=-0.009 Sum_probs=131.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
......+++|+|+.. +... ....++.++..+..... ...... ....++.++|||+ |++...... .-
T Consensus 15 ~~~~~i~~d~~g~l~-v~~~---~~~~v~~~d~~~~~~~~-~~~~~~-------~~~~~i~~~~~g~-l~v~~~~~~-~i 80 (299)
T 2z2n_A 15 TGPYGITVSDKGKVW-ITQH---KANMISCINLDGKITEY-PLPTPD-------AKVMCLTISSDGE-VWFTENAAN-KI 80 (299)
T ss_dssp CCEEEEEECTTSCEE-EEET---TTTEEEEECTTCCEEEE-ECSSTT-------CCEEEEEECTTSC-EEEEETTTT-EE
T ss_pred CCccceEECCCCCEE-EEec---CCCcEEEEcCCCCeEEe-cCCccc-------CceeeEEECCCCC-EEEeCCCCC-eE
Confidence 346778899999733 3322 12346666633443322 221110 1124788889886 444332111 00
Q ss_pred CCccCCCCCCC-CCCccCCCCCCcccccCCcCcccCCc-cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 179 PTFSLGSTKGG-SSDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~g~~~~~~-~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..++.. .... ..............+.++ |..++.. ....|+++|. +++...+........+..++++|||+
T Consensus 81 ~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~---- 153 (299)
T 2z2n_A 81 GRITKK-GIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA---- 153 (299)
T ss_dssp EEECTT-SCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC----
T ss_pred EEECCC-CcEEEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC----
Confidence 001100 0000 000000111122334444 3444432 3467888888 55555442111223567788999985
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee--cCCCCccccceeecCCCCEEEEE
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|++... ....|+++|. +++... +...........+++||+ |++.
T Consensus 154 -l~v~~~--------------~~~~i~~~~~------------------~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~ 199 (299)
T 2z2n_A 154 -LWFTEN--------------QNNAIGRITE------------------SGDITEFKIPTPASGPVGITKGNDDA-LWFV 199 (299)
T ss_dssp -EEEEET--------------TTTEEEEECT------------------TCCEEEEECSSTTCCEEEEEECTTSS-EEEE
T ss_pred -EEEEeC--------------CCCEEEEEcC------------------CCcEEEeeCCCCCCcceeEEECCCCC-EEEE
Confidence 666541 2236888885 233332 222233456788999988 5444
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
... ...|+++|. ++....+ ...... ..+..++++++|+ |++... ....
T Consensus 200 ~~~----------~~~i~~~~~-~g~~~~~-----------~~~~~~-------~~~~~i~~~~~g~-l~v~~~--~~~~ 247 (299)
T 2z2n_A 200 EII----------GNKIGRITT-SGEITEF-----------KIPTPN-------ARPHAITAGAGID-LWFTEW--GANK 247 (299)
T ss_dssp ETT----------TTEEEEECT-TCCEEEE-----------ECSSTT-------CCEEEEEECSTTC-EEEEET--TTTE
T ss_pred ccC----------CceEEEECC-CCcEEEE-----------ECCCCC-------CCceeEEECCCCC-EEEecc--CCce
Confidence 322 245888887 4432111 000000 1233567788887 665542 2346
Q ss_pred EEEEECCCCcEEEecCCC--CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 415 IISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~--~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
|++++. ++++..+.... .......+ ++ +.+++..+ ...+++++..
T Consensus 248 i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~-g~l~v~~~----~~~l~~~~~~ 294 (299)
T 2z2n_A 248 IGRLTS-NNIIEEYPIQIKSAEPHGICF-DG-ETIWFAME----CDKIGKLTLI 294 (299)
T ss_dssp EEEEET-TTEEEEEECSSSSCCEEEEEE-CS-SCEEEEET----TTEEEEEEEC
T ss_pred EEEECC-CCceEEEeCCCCCCccceEEe-cC-CCEEEEec----CCcEEEEEcC
Confidence 888898 57766664222 22222344 44 44555442 2456666654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.005 Score=59.29 Aligned_cols=178 Identities=13% Similarity=0.196 Sum_probs=103.2
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.++|+++|++..-...+. .......++++++ |+...|. ...++++|.
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~----ly~ltw~--------------~~~v~v~D~--------- 92 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDR----LIQLTWR--------------NHEGFVYDL--------- 92 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEESS--------------SSEEEEEET---------
T ss_pred CceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCE----EEEEEee--------------CCEEEEEEC---------
Confidence 4789999999998866521232 2333445667777 7777653 337999997
Q ss_pred hhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.+. .++.... ....+++||+.|+. ++. ..+|+++|.++.+... .+++.
T Consensus 93 --------~tl~~~~ti~~~~---~Gwglt~dg~~L~v-Sdg----------s~~l~~iDp~t~~~~~-------~I~V~ 143 (243)
T 3mbr_X 93 --------ATLTPRARFRYPG---EGWALTSDDSHLYM-SDG----------TAVIRKLDPDTLQQVG-------SIKVT 143 (243)
T ss_dssp --------TTTEEEEEEECSS---CCCEEEECSSCEEE-ECS----------SSEEEEECTTTCCEEE-------EEECE
T ss_pred --------CcCcEEEEEeCCC---CceEEeeCCCEEEE-ECC----------CCeEEEEeCCCCeEEE-------EEEEc
Confidence 55443 3333221 23456789987654 433 2569999987755311 11111
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-------------C-CCceeeEEe
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-------------E-SNFSWSLLT 441 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-------------~-~~~~~~~~s 441 (771)
. ..++ ...+..+.|. ||+ |+ ...+. ...|.+||+++|++.....- . ......+++
T Consensus 144 ~----~g~~---~~~lNeLe~~-~G~-ly-anvw~-s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d 212 (243)
T 3mbr_X 144 A----GGRP---LDNLNELEWV-NGE-LL-ANVWL-TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD 212 (243)
T ss_dssp E----TTEE---CCCEEEEEEE-TTE-EE-EEETT-TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred c----CCcc---cccceeeEEe-CCE-EE-EEECC-CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc
Confidence 0 1111 0012233454 664 65 43433 34899999999998754321 1 123456888
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 442 LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 442 ~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
++++.|+.+.-.. +.+|.+.+.
T Consensus 213 ~~~~~lfVTGK~w---p~~~~v~~~ 234 (243)
T 3mbr_X 213 AEHDRLFVTGKRW---PMLYEIRLT 234 (243)
T ss_dssp TTTTEEEEEETTC---SEEEEEEEC
T ss_pred CCCCEEEEECCCC---CcEEEEEEe
Confidence 8888888877655 557766654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.012 Score=57.47 Aligned_cols=210 Identities=12% Similarity=0.142 Sum_probs=117.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...+..+|.|++++|+.+.+. ...++.++..++..+.+.+... ..+.++++.++|+ ++.+.+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~---~~~I~~ld~~g~v~~~i~l~g~--------~D~EGIa~~~~g~-~~vs~E~----- 89 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK---PAAIVEMTTNGDLIRTIPLDFV--------KDLETIEYIGDNQ-FVISDER----- 89 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET---TEEEEEEETTCCEEEEEECSSC--------SSEEEEEECSTTE-EEEEETT-----
T ss_pred cCcceeEEeCCCCEEEEEECC---CCeEEEEeCCCCEEEEEecCCC--------CChHHeEEeCCCE-EEEEECC-----
Confidence 457889999999988777664 4679999955666665554321 1126889998885 4333332
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce----eecc----CCCCCCccceEEEecC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVK----GIPKSLSVGQVVWAPL 250 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~----~~l~----~~~~~~~~~~~~wspD 250 (771)
...|+++++..... .... ..+.+.....++|+|+
T Consensus 90 --------------------------------------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~ 131 (255)
T 3qqz_A 90 --------------------------------------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ 131 (255)
T ss_dssp --------------------------------------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT
T ss_pred --------------------------------------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC
Confidence 24566666543321 1111 1234556789999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-------CCCCcccccee
Q 004149 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPR 323 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-------t~~~~~~~~p~ 323 (771)
+++ |+.+. +..+ ..||.++- .+ .+...+.+ ........+.+
T Consensus 132 ~~~----L~va~-E~~p------------~~i~~~~g--~~-------------~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 132 DHT----FWFFK-EKNP------------IEVYKVNG--LL-------------SSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTE----EEEEE-ESSS------------EEEEEEES--TT-------------CSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCE----EEEEE-CcCC------------ceEEEEcc--cc-------------cCCceeeecchhhccccccCCceeEE
Confidence 987 77654 3222 25677661 00 11111111 01122356788
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc--cCCCCCcccccCCCCCCccccCCC
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC--AEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~g~~~~~~~~~~~s~dg~ 401 (771)
+.|.-..|+.++... ..|..+|.++. .+. ...+... .....++ ....+++.++|+
T Consensus 180 ~dp~tg~lliLS~~s----------~~L~~~d~~g~-~~~-------~~~L~~g~~~l~~~~~-----qpEGia~d~~G~ 236 (255)
T 3qqz_A 180 FNQQKNTLLVLSHES----------RALQEVTLVGE-VIG-------EMSLTKGSRGLSHNIK-----QAEGVAMDASGN 236 (255)
T ss_dssp EETTTTEEEEEETTT----------TEEEEECTTCC-EEE-------EEECSTTGGGCSSCCC-----SEEEEEECTTCC
T ss_pred EcCCCCeEEEEECCC----------CeEEEEcCCCC-EEE-------EEEcCCccCCcccccC-----CCCeeEECCCCC
Confidence 899888888888764 46888886653 210 1111100 0001122 234678999996
Q ss_pred EEEEEeeeCCeeEEEEEECCC
Q 004149 402 TMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~t 422 (771)
||+++. . ..+|++...+
T Consensus 237 -lyIvsE-~--n~~y~f~~~~ 253 (255)
T 3qqz_A 237 -IYIVSE-P--NRFYRFTPQS 253 (255)
T ss_dssp -EEEEET-T--TEEEEEEC--
T ss_pred -EEEEcC-C--ceEEEEEecC
Confidence 766643 2 2677776543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.022 Score=55.52 Aligned_cols=201 Identities=11% Similarity=0.153 Sum_probs=111.3
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
+++++|.||++.|+.+.+. .+.|+.+|+++...+.+.
T Consensus 29 lSGla~~~~~~~L~aV~d~-------------------------------------------~~~I~~ld~~g~v~~~i~ 65 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINK-------------------------------------------PAAIVEMTTNGDLIRTIP 65 (255)
T ss_dssp EEEEEEETTTTEEEEEEET-------------------------------------------TEEEEEEETTCCEEEEEE
T ss_pred cceeEEeCCCCEEEEEECC-------------------------------------------CCeEEEEeCCCCEEEEEe
Confidence 3799999999888777553 278999999844344442
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---cee
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVN 311 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~ 311 (771)
..+......+++.++|. ++.+. + +...|++++++. .+. ...
T Consensus 66 -l~g~~D~EGIa~~~~g~-----~~vs~-E-------------~~~~l~~~~v~~----------------~~~i~~~~~ 109 (255)
T 3qqz_A 66 -LDFVKDLETIEYIGDNQ-----FVISD-E-------------RDYAIYVISLTP----------------NSEVKILKK 109 (255)
T ss_dssp -CSSCSSEEEEEECSTTE-----EEEEE-T-------------TTTEEEEEEECT----------------TCCEEEEEE
T ss_pred -cCCCCChHHeEEeCCCE-----EEEEE-C-------------CCCcEEEEEcCC----------------CCeeeeeee
Confidence 23334566778877664 43332 2 223677766531 111 011
Q ss_pred ----c--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec-CCCCCCCCccceeeEEec--ccccCCCC
Q 004149 312 ----L--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW-PTNGNFSSLEKIVDVIPV--VQCAEGDC 382 (771)
Q Consensus 312 ----l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~-~~~~~~~~~~~~~~~~~~--~~~~~~~~ 382 (771)
+ ...+......+|+|++++|+....+. ...||.++- ..+. .+ .+... +....
T Consensus 110 ~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---------p~~i~~~~g~~~~~--~l-----~i~~~~~~~~~~--- 170 (255)
T 3qqz_A 110 IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---------PIEVYKVNGLLSSN--EL-----HISKDKALQRQF--- 170 (255)
T ss_dssp EECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---------SEEEEEEESTTCSS--CC-----EEEECHHHHHTC---
T ss_pred eccccccccccCCcceEEEeCCCCEEEEEECcC---------CceEEEEcccccCC--ce-----eeecchhhcccc---
Confidence 1 12234468899999999887766543 246888871 0111 01 01100 00000
Q ss_pred CcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC---------CceeeEEeecCCEEEEEEeC
Q 004149 383 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES---------NFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 383 f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~---------~~~~~~~s~d~~~l~~~~s~ 453 (771)
....+..+++.|...+|++.+. ....|..+|.++.-+..+.-..+ ......++++|+ ||.+ +-
T Consensus 171 ----~~~d~S~l~~dp~tg~lliLS~--~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE 242 (255)
T 3qqz_A 171 ----TLDDVSGAEFNQQKNTLLVLSH--ESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SE 242 (255)
T ss_dssp ----CSSCCCEEEEETTTTEEEEEET--TTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ET
T ss_pred ----ccCCceeEEEcCCCCeEEEEEC--CCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cC
Confidence 0113456778787777877764 33568888986543333332221 234467888886 5555 43
Q ss_pred CCCCCeEEEEE
Q 004149 454 PVDVPQVKYGY 464 (771)
Q Consensus 454 ~~~p~~l~~~~ 464 (771)
++ .+|++.
T Consensus 243 ~n---~~y~f~ 250 (255)
T 3qqz_A 243 PN---RFYRFT 250 (255)
T ss_dssp TT---EEEEEE
T ss_pred Cc---eEEEEE
Confidence 33 667664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.036 Score=55.46 Aligned_cols=171 Identities=12% Similarity=0.050 Sum_probs=93.7
Q ss_pred ceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 218 PSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|+++|.+ ++.+.+. .+ ....+..+++.++|+ |++... ....|+.++.
T Consensus 83 ~~v~~~d~~-g~~~~~~-~~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~--------- 132 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYP-LPQPDSGPYGITEGLNGD-----IWFTQL--------------NGDRIGKLTA--------- 132 (300)
T ss_dssp TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECSTTC-----EEEEET--------------TTTEEEEECT---------
T ss_pred CeEEEECCC-CCeEEec-CCCCCCCCccceECCCCC-----EEEEcc--------------CCCeEEEECC---------
Confidence 568888877 5555442 22 224566788888886 665541 2337888886
Q ss_pred hhhhcCCCCCCcceec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 297 LELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
+ ++...+ ...........++++|+ |++.... ...|+++|. +++...+
T Consensus 133 --------~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~----------~~~i~~~~~-~g~~~~~---------- 181 (300)
T 2qc5_A 133 --------D-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ----------NNSIGRITN-TGKLEEY---------- 181 (300)
T ss_dssp --------T-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETT----------TTEEEEECT-TCCEEEE----------
T ss_pred --------C-CCEEEccCCCCCCCceeEEECCCCC-EEEEecC----------CCeEEEECC-CCcEEEe----------
Confidence 4 443332 22334567788999998 5554432 235888887 3332111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEEEe
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~d~~~l~~~~s 452 (771)
..+.... .+..+++.++|+ |+++.. ....|++++. +++...+... ........++++|+ |+++..
T Consensus 182 -~~~~~~~-------~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 248 (300)
T 2qc5_A 182 -PLPTNAA-------APVGITSGNDGA-LWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEW 248 (300)
T ss_dssp -ECSSTTC-------CEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEET
T ss_pred -eCCCCCC-------CcceEEECCCCC-EEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEecc
Confidence 0000001 123556778885 665543 2346888888 6776665322 12233345666665 554442
Q ss_pred CCCCCCeEEEEEe
Q 004149 453 SPVDVPQVKYGYF 465 (771)
Q Consensus 453 ~~~~p~~l~~~~~ 465 (771)
. ...|++++.
T Consensus 249 ~---~~~i~~~~~ 258 (300)
T 2qc5_A 249 G---ANQIGRITN 258 (300)
T ss_dssp T---TTEEEEECT
T ss_pred C---CCeEEEECC
Confidence 2 345666654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0037 Score=62.72 Aligned_cols=94 Identities=9% Similarity=0.036 Sum_probs=54.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|+++|.++.....+........+..++++|||+ |+++.. ....|++++.
T Consensus 142 ~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 192 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-----IFISDN--------------RAHCVKVFNY---------- 192 (286)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-----EEEEEG--------------GGTEEEEEET----------
T ss_pred CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 57888887655444442111223467889999986 554431 2237888886
Q ss_pred hhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 298 ELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
++.....+... .......+++|||+ |+...... ...|.++|..
T Consensus 193 -------~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~---------~~~i~~~~~~ 237 (286)
T 1q7f_A 193 -------EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHN---------NFNLTIFTQD 237 (286)
T ss_dssp -------TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSS---------SCEEEEECTT
T ss_pred -------CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCC---------CEEEEEECCC
Confidence 44444444332 23466789999996 44433221 1268888854
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0029 Score=61.48 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=100.3
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.++|+++|++..-. .+. .......+++|++ |+...|.. ..++++|.
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~----Ly~ltw~~--------------~~v~V~D~---------- 123 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLG--NIFAEGLASDGER----LYQLTWTE--------------GLLFTWSG---------- 123 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECT--TCCEEEEEECSSC----EEEEESSS--------------CEEEEEET----------
T ss_pred CEEEEEECCCCcEEeEE-CCC--CcceeEEEEeCCE----EEEEEccC--------------CEEEEEEC----------
Confidence 34999999999875542 232 2223345778888 88877533 37999997
Q ss_pred hhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 298 ELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++.+. .++... . ....+++||+.|+. ++. ..+|+++|.++.+... .+.+..
T Consensus 124 -------~Tl~~~~ti~~~-~--eGwGLt~Dg~~L~v-SdG----------s~~l~~iDp~T~~v~~-------~I~V~~ 175 (268)
T 3nok_A 124 -------MPPQRERTTRYS-G--EGWGLCYWNGKLVR-SDG----------GTMLTFHEPDGFALVG-------AVQVKL 175 (268)
T ss_dssp -------TTTEEEEEEECS-S--CCCCEEEETTEEEE-ECS----------SSEEEEECTTTCCEEE-------EEECEE
T ss_pred -------CcCcEEEEEeCC-C--ceeEEecCCCEEEE-ECC----------CCEEEEEcCCCCeEEE-------EEEeCC
Confidence 55443 333322 1 23456689997754 432 2579999987755311 111111
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--------------CCceeeEEee
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLTL 442 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--------------~~~~~~~~s~ 442 (771)
. .++ ...+..+.|. || +|++. .+. ...|.+||+++|++.....-. ......++++
T Consensus 176 ~----g~~---v~~lNeLe~~-dG-~lyan-vw~-s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 176 R----GQP---VELINELECA-NG-VIYAN-IWH-SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp T----TEE---CCCEEEEEEE-TT-EEEEE-ETT-CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred C----Ccc---cccccccEEe-CC-EEEEE-ECC-CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 1 000 0012234566 77 46543 333 348999999999977543211 1234467888
Q ss_pred cCCEEEEEEeCCCCCCeEEEEEe
Q 004149 443 DGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 443 d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
+++.|+.+.-.. +.+|.+.+
T Consensus 245 ~~~rlfVTGK~W---p~~~ev~~ 264 (268)
T 3nok_A 245 GSGRIFMTGKLW---PRLFEVRL 264 (268)
T ss_dssp TTCCEEEEETTC---SEEEEEEE
T ss_pred CCCEEEEeCCCC---CceEEEEE
Confidence 888877766544 44555443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.38 E-value=0.016 Score=58.72 Aligned_cols=161 Identities=12% Similarity=0.189 Sum_probs=93.4
Q ss_pred cceEEEeCCCCCeEEEEecCC------------CCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeec----CC
Q 004149 100 GASAVVPSPSGSKLLVVRNPE------------NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN----SD 163 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wS----pD 163 (771)
.....+++|+|+.. +..... .....++.++..++...+....... .++.|+ ||
T Consensus 118 ~~~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~----------~~i~~~~~~d~d 186 (314)
T 1pjx_A 118 GCNDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP----------NGIAVRHMNDGR 186 (314)
T ss_dssp CCCEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE----------EEEEEEECTTSC
T ss_pred CCcCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCc----------ceEEEecccCCC
Confidence 36678999999643 433211 0124577776335444433221112 478899 99
Q ss_pred CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-CCcee---eccCCCCC
Q 004149 164 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQ---AVKGIPKS 239 (771)
Q Consensus 164 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~---~l~~~~~~ 239 (771)
|+.|++... ....|+++|++ +++.. .+...+..
T Consensus 187 g~~l~v~~~-------------------------------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 187 PYQLIVAET-------------------------------------------PTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp EEEEEEEET-------------------------------------------TTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred CCEEEEEEC-------------------------------------------CCCeEEEEECCCCCccccceEEEECCCC
Confidence 987665422 12578888876 44421 11102222
Q ss_pred --CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC
Q 004149 240 --LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 316 (771)
Q Consensus 240 --~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~ 316 (771)
..+..+++++||+ |++... ....|+++|. ++++ ...+....
T Consensus 224 ~~~~p~~i~~d~~G~-----l~v~~~--------------~~~~i~~~d~-----------------~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 224 HEGGADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP-----------------DGGQPKMRIRCPF 267 (314)
T ss_dssp SSCEEEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT-----------------TCBSCSEEEECSS
T ss_pred CCCCCCceEECCCCC-----EEEEEc--------------CCCEEEEEcC-----------------CCCcEeEEEeCCC
Confidence 3466789999985 665542 2237888987 5333 33333333
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.......|+|||+.|++..... ..|+++++...+
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~----------~~l~~~~~~~~g 301 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHEN----------NAVWKFEWQRNG 301 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTT----------TEEEEEECSSCB
T ss_pred CCceeEEECCCCCEEEEEeCCC----------CeEEEEeCCCCC
Confidence 4577889999999877665442 358888876543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0043 Score=62.06 Aligned_cols=185 Identities=13% Similarity=0.102 Sum_probs=98.8
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
++.....|+++|.++|+...-...........+.++|||+ |++.. . ..|+.+|.
T Consensus 10 ~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-----ilvs~-~---------------~~V~~~d~----- 63 (276)
T 3no2_A 10 GGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-----ILFSY-S---------------KGAKMITR----- 63 (276)
T ss_dssp ECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-----EEEEC-B---------------SEEEEECT-----
T ss_pred eeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-----EEEeC-C---------------CCEEEECC-----
Confidence 3446689999999888865542122213567889999998 55432 1 14666664
Q ss_pred hhhhhhhhcCCCCCCcceecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCccceee
Q 004149 293 EASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVD 370 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~ 370 (771)
++....++... .....++.++|||+.|+-.... ...|+.+|.+ |+. ..+
T Consensus 64 ------------~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~----------~~~v~~vd~~-Gk~l~~~------ 114 (276)
T 3no2_A 64 ------------DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH----------PSTILEVNMK-GEVLSKT------ 114 (276)
T ss_dssp ------------TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST----------TEEEEEECTT-SCEEEEE------
T ss_pred ------------CCCEEEEEcCCCCccccccEECCCCCEEEEecCC----------CCEEEEEeCC-CCEEEEE------
Confidence 33333333332 2345678899999987654431 1346666643 221 110
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004149 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~ 450 (771)
.+ .. ..++-+ ......+.++||..|+ +.. ....++.+|.+ |++..-.............++|+.+++.
T Consensus 115 --~~---~~--~~~~~~-~~~~~v~~~~~G~~lv-~~~--~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~ 182 (276)
T 3no2_A 115 --EF---ET--GIERPH-AQFRQINKNKKGNYLV-PLF--ATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVAC 182 (276)
T ss_dssp --EE---CC--SCSSGG-GSCSCCEECTTSCEEE-EET--TTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEEC
T ss_pred --ec---cC--CCCccc-ccccCceECCCCCEEE-Eec--CCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEe
Confidence 00 00 000000 0123456788998654 332 33468888987 6654333222222234556677766543
Q ss_pred EeCCCCCCeEEEEEeccc
Q 004149 451 SSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 451 ~s~~~~p~~l~~~~~~~~ 468 (771)
.. ..+|+.++..++
T Consensus 183 ~~----~~~v~~~d~~tG 196 (276)
T 3no2_A 183 GD----AHCFVQLNLESN 196 (276)
T ss_dssp BT----TSEEEEECTTTC
T ss_pred CC----CCeEEEEeCcCC
Confidence 32 246777776544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.066 Score=54.18 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=24.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV 141 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 141 (771)
.....+++|||+ | |+.+......+++.++ .+++.+.+...
T Consensus 73 ~p~gia~~~dG~-l-~vad~~~~~~~v~~~d~~~g~~~~~~~~ 113 (306)
T 2p4o_A 73 KVSGLAFTSNGD-L-VATGWNADSIPVVSLVKSDGTVETLLTL 113 (306)
T ss_dssp EEEEEEECTTSC-E-EEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CceeEEEcCCCc-E-EEEeccCCcceEEEEcCCCCeEEEEEeC
Confidence 456688999998 4 4444322234577776 56665555544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0054 Score=63.53 Aligned_cols=68 Identities=9% Similarity=0.255 Sum_probs=37.0
Q ss_pred ccceEEEeCCCCCeEEEEecCC---CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPSGSKLLVVRNPE---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....++++|+|+ |.++ +.. .....++.++ .+++..+.+.++.... .....+..+.++|++..+ |+++
T Consensus 67 ~~p~gv~~d~~g~-L~v~-D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~vd~~~g~~-yvtd 138 (343)
T 2qe8_A 67 DTVLGIKSDGNGI-VWML-DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAVDLIHNFV-YISD 138 (343)
T ss_dssp SCEEEEEECSSSE-EEEE-ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEEETTTTEE-EEEE
T ss_pred eEeeEEEEcCCCc-EEEE-cCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---ccccccceEEEecCCCEE-EEEc
Confidence 4577889999986 4343 321 0134677777 5565455555432110 011123578899877655 4443
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00092 Score=68.54 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=60.3
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..+.++++||.++. ...|......| ++.|+.+++++.. . ...++++.+.+...+... ..
T Consensus 44 ~~~~~l~~~hg~~g~--~~~~~~~~~~l---~~~v~~~~~~~~~----------~----~~~~~~~a~~~~~~i~~~-~~ 103 (316)
T 2px6_A 44 SSERPLFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTRAA----------P----LDSIHSLAAYYIDCIRQV-QP 103 (316)
T ss_dssp CSSCCEEEECCTTCC--SGGGHHHHHHC---SSCEEEECCCTTS----------C----TTCHHHHHHHHHHHHTTT-CS
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhc---CCCEEEEECCCCC----------C----cCCHHHHHHHHHHHHHHh-CC
Confidence 345679999997654 34666666665 3999999998310 1 113444444433333321 12
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCC---Cc---eeEEEecCCc
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAP---DK---FVAAAARNPL 650 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p---~~---~~a~v~~~p~ 650 (771)
..++.++||||||.++..++.+.+ +. ++.+++.++.
T Consensus 104 ~~~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~~ 145 (316)
T 2px6_A 104 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 145 (316)
T ss_dssp SCCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESCS
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcCC
Confidence 367999999999999999887643 34 6777775553
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.089 Score=58.98 Aligned_cols=207 Identities=14% Similarity=0.084 Sum_probs=122.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.......|.+.+..|.+. +. ....|+.+. +++....++...... ..++++.+.++.|++. +.
T Consensus 349 ~~~~~ld~d~~~~~ly~s-D~--~~~~I~r~~~~g~~~~~v~~~~~~~---------p~GlAvD~~~~~lY~t-D~---- 411 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWT-DD--EVRAIRRSFIDGSGSQFVVTAQIAH---------PDGIAVDWVARNLYWT-DT---- 411 (619)
T ss_dssp SSEEEEEEETTTTEEEEE-ET--TTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTEEEEE-ET----
T ss_pred CccEEEEEEcCCCeEEEE-eC--CCCeEEEEEcCCCccEEEEECCCCC---------cCceEEecccCcEEEE-eC----
Confidence 345677888888888655 32 234677777 444444444322111 1477888777777664 21
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.+.++++...+.+. ...-..+..++..|....
T Consensus 412 --------------------------------------~~~~I~v~~~~G~~~~~l~-~~~l~~P~~iavdp~~G~---- 448 (619)
T 3s94_A 412 --------------------------------------GTDRIEVTRLNGTMRKILI-SEDLEEPRAIVLDPMVGY---- 448 (619)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEEE-CTTCCSEEEEEEETTTTE----
T ss_pred --------------------------------------CCCcEEEEeCCCCeEEEEE-ECCCCCeeeEEEEcCCCc----
Confidence 2368899999887666662 122235678889987554
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+|+-|. ....|++.++ ++...+.|.. ........++++++++|++...
T Consensus 449 ly~tD~g-------------~~~~I~r~~~-----------------dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 449 MYWTDWG-------------EIPKIERAAL-----------------DGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEecCC-------------CCCEEEEEcc-----------------CCCccEEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 7666432 1247999998 5544444433 3345667899999999999875
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
.. ..|.++++++...+.+.. ..+. .+..++. ++..||++- .....|+
T Consensus 499 ~~----------~~I~~~~~dG~~~~~~~~--------------~~l~-----~P~glav--~~~~ly~tD--~~~~~I~ 545 (619)
T 3s94_A 499 KT----------DKIEVMNTDGTGRRVLVE--------------DKIP-----HIFGFTL--LGDYVYWTD--WQRRSIE 545 (619)
T ss_dssp TT----------TEEEEEESSSCCCEEEEE--------------CCCC-----SSCCEEE--ETTEEEEEC--TTSSCEE
T ss_pred CC----------CEEEEEecCCCceEEEec--------------cCCC-----CcEEEEE--ECCEEEEee--cCCCeEE
Confidence 53 479999987654322210 0010 1223333 334666653 2345678
Q ss_pred EEECCCCcEEEe
Q 004149 417 SVNVSSGELLRI 428 (771)
Q Consensus 417 ~~d~~tg~~~~l 428 (771)
++|..+|+.+.+
T Consensus 546 ~~~k~~g~~~~~ 557 (619)
T 3s94_A 546 RVHKRSAEREVI 557 (619)
T ss_dssp EEESSSCCEEEE
T ss_pred EEEcCCCceEEE
Confidence 888877755444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.044 Score=52.73 Aligned_cols=205 Identities=10% Similarity=0.074 Sum_probs=114.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+...|++ .+| |.+....+.+.+..++ ..++..+.+.++.... +...+++|.+|+-+.
T Consensus 23 tqGL~~~~--~~L-yestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f----------geGi~~~~~~ly~lt-------- 81 (243)
T 3mbr_X 23 TEGLFYLR--GHL-YESTGETGRSSVRKVDLETGRILQRAEVPPPYF----------GAGIVAWRDRLIQLT-------- 81 (243)
T ss_dssp EEEEEEET--TEE-EEEECCTTSCEEEEEETTTCCEEEEEECCTTCC----------EEEEEEETTEEEEEE--------
T ss_pred cccEEEEC--CEE-EEECCCCCCceEEEEECCCCCEEEEEeCCCCcc----------eeEEEEeCCEEEEEE--------
Confidence 44567775 344 6666555677888888 7777777777655442 334555677765542
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
| ....++++|.++.++..- .+... .....++||+. |+
T Consensus 82 ----------------------------w-------~~~~v~v~D~~tl~~~~t--i~~~~--~Gwglt~dg~~----L~ 118 (243)
T 3mbr_X 82 ----------------------------W-------RNHEGFVYDLATLTPRAR--FRYPG--EGWALTSDDSH----LY 118 (243)
T ss_dssp ----------------------------S-------SSSEEEEEETTTTEEEEE--EECSS--CCCEEEECSSC----EE
T ss_pred ----------------------------e-------eCCEEEEEECCcCcEEEE--EeCCC--CceEEeeCCCE----EE
Confidence 1 237899999998876544 22221 23456788886 55
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC--CCcc---ccceeecCCCCEEEE
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE--SISS---AFFPRFSPDGKFLVF 333 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~--~~~~---~~~p~~SpDG~~l~f 333 (771)
. ++ +...|+.+|. ++.+. .++.- .... .....|. +|+ | |
T Consensus 119 v-Sd--------------gs~~l~~iDp-----------------~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-l-y 163 (243)
T 3mbr_X 119 M-SD--------------GTAVIRKLDP-----------------DTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-L-L 163 (243)
T ss_dssp E-EC--------------SSSEEEEECT-----------------TTCCEEEEEECEETTEECCCEEEEEEE-TTE-E-E
T ss_pred E-EC--------------CCCeEEEEeC-----------------CCCeEEEEEEEccCCcccccceeeEEe-CCE-E-E
Confidence 4 42 3347999997 55432 22321 1111 1223343 665 4 4
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
...-. ...|.++|.++++.... -++..+.........+ -...+..++|.|++++||++. ..+.
T Consensus 164 anvw~---------s~~I~vIDp~tG~V~~~----idl~~l~~~~~~~~~~--~~~vlNGIA~d~~~~~lfVTG--K~wp 226 (243)
T 3mbr_X 164 ANVWL---------TSRIARIDPASGKVVAW----IDLQALVPDADALTDS--TNDVLNGIAFDAEHDRLFVTG--KRWP 226 (243)
T ss_dssp EEETT---------TTEEEEECTTTCBEEEE----EECGGGSTTTTSCCCT--TSSCEEEEEEETTTTEEEEEE--TTCS
T ss_pred EEECC---------CCeEEEEECCCCCEEEE----EECCcCccccccccCC--cCCceEEEEEcCCCCEEEEEC--CCCC
Confidence 33321 35799999988774211 0000011000000000 001235789999999888764 5667
Q ss_pred EEEEEECC
Q 004149 414 VIISVNVS 421 (771)
Q Consensus 414 ~l~~~d~~ 421 (771)
.||.|.+.
T Consensus 227 ~~~~v~~~ 234 (243)
T 3mbr_X 227 MLYEIRLT 234 (243)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEe
Confidence 88887653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.02 Score=55.61 Aligned_cols=144 Identities=10% Similarity=-0.018 Sum_probs=76.5
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...++++|.++.++..- .+.. ......++||+. |+ +++ ....|+.+|.
T Consensus 115 ~~~v~V~D~~Tl~~~~t--i~~~--~eGwGLt~Dg~~----L~-vSd--------------Gs~~l~~iDp--------- 162 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERT--TRYS--GEGWGLCYWNGK----LV-RSD--------------GGTMLTFHEP--------- 162 (268)
T ss_dssp SCEEEEEETTTTEEEEE--EECS--SCCCCEEEETTE----EE-EEC--------------SSSEEEEECT---------
T ss_pred CCEEEEEECCcCcEEEE--EeCC--CceeEEecCCCE----EE-EEC--------------CCCEEEEEcC---------
Confidence 37899999998876544 2221 112345678875 44 442 3348999997
Q ss_pred hhhhcCCCCCCcc-eecC--CCCcc---ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004149 297 LELKESSSEDLPV-VNLT--ESISS---AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 297 ~~~~~~~~~~~~~-~~lt--~~~~~---~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
++.+. .++. ..... .....|. ||+ |+ ...-. ...|.++|.++++..... +
T Consensus 163 --------~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-ly-anvw~---------s~~I~vIDp~TG~V~~~I----d 218 (268)
T 3nok_A 163 --------DGFALVGAVQVKLRGQPVELINELECA-NGV-IY-ANIWH---------SSDVLEIDPATGTVVGVI----D 218 (268)
T ss_dssp --------TTCCEEEEEECEETTEECCCEEEEEEE-TTE-EE-EEETT---------CSEEEEECTTTCBEEEEE----E
T ss_pred --------CCCeEEEEEEeCCCCcccccccccEEe-CCE-EE-EEECC---------CCeEEEEeCCCCcEEEEE----E
Confidence 55443 2222 22111 2234555 774 54 43322 357999999887752110 0
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
+..+.........+ ....+..++|.|++++||++. ..+..||.|.+
T Consensus 219 l~~L~~~~~~~~~~--~~~vlNGIA~dp~~~rlfVTG--K~Wp~~~ev~~ 264 (268)
T 3nok_A 219 ASALTRAVAGQVTN--PEAVLNGIAVEPGSGRIFMTG--KLWPRLFEVRL 264 (268)
T ss_dssp CHHHHHHHTTTCCC--TTCCEEEEEECTTTCCEEEEE--TTCSEEEEEEE
T ss_pred CCCCcccccccccC--cCCceEEEEEcCCCCEEEEeC--CCCCceEEEEE
Confidence 00000000000000 001235789999999887754 56677887764
|
| >4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.017 Score=57.36 Aligned_cols=129 Identities=20% Similarity=0.242 Sum_probs=79.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC---------------------cEEEEECCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG---------------------YSLLIVNYR 575 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G---------------------~~V~~~d~r 575 (771)
++..+..|++.... .....|+|+++.|||+.... ...|.+.| ..++.+|.+
T Consensus 32 ~~~~lFywf~es~~--~p~~~Pl~lWlnGGPGcSS~------~g~~~E~GP~~~~~~~~~l~~N~~sW~~~an~lfiD~P 103 (300)
T 4az3_A 32 GSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL------DGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESP 103 (300)
T ss_dssp TTEEEEEEEECCSS--CTTTSCEEEEECCTTTBCTH------HHHHHTTSSEEECTTSSCEEECTTCGGGSSEEEEECCS
T ss_pred CCCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH------HHHHhcCCCceecCCCccccccCccHHhhhcchhhcCC
Confidence 35678888886543 34567999999999987531 12222222 567788877
Q ss_pred CCCCCChhhhhcCCCCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC----CCceeEEEecCCc
Q 004149 576 GSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPL 650 (771)
Q Consensus 576 G~~~~g~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~ 650 (771)
-..|+....... ..........|+..++. |+...+.....++.|.|.|+||..+-.+|..- .-.++++++.+|+
T Consensus 104 vGtGfSy~~~~~-~~~~~~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GESY~G~yvP~~a~~i~~~~~inLkG~~iGNg~ 182 (300)
T 4az3_A 104 AGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 182 (300)
T ss_dssp TTSTTCEETTCC-CCCBHHHHHHHHHHHHHHHHHHCGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred CcccccccCCCc-ccccchhhHHHHHHHHHHHHHhChhhcCCceEEEecCCceeeHHHHHHHHHhCCCcccccceecCCc
Confidence 545554332111 00111122455555554 44444445567899999999999998887531 2247999999999
Q ss_pred cchh
Q 004149 651 CNLA 654 (771)
Q Consensus 651 ~~~~ 654 (771)
++..
T Consensus 183 ~d~~ 186 (300)
T 4az3_A 183 SSYE 186 (300)
T ss_dssp SBHH
T ss_pred cCHH
Confidence 8753
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.019 Score=61.34 Aligned_cols=158 Identities=15% Similarity=0.260 Sum_probs=90.9
Q ss_pred cceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
....++++| ++..|. +.+.. ..++.++ .++....+....... ..++|++||++|+.. +....
T Consensus 138 ~P~~lavdp~~~g~Ly-v~d~~---~~I~~id~~~~~v~~~~~~~~~P----------~~ia~d~~G~~lyva-d~~~~- 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLY-LVGEQ---HPTRLIDFEKEYVSTVYSGLSKV----------RTICWTHEADSMIIT-NDQNN- 201 (430)
T ss_dssp CCCEEEEETTEEEEEE-EEEBT---EEEEEEETTTTEEEEEECCCSCE----------EEEEECTTSSEEEEE-ECCSC-
T ss_pred CCCEEEECCCCCCeEE-EEeCC---CcEEEEECCCCEEEEEecCCCCc----------ceEEEeCCCCEEEEE-eCCCC-
Confidence 456788999 566664 44432 4577777 444444443321112 489999999966554 32110
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.....+++++.+++-. +.+ ..-..+..++++|++..
T Consensus 202 -------------------------------------~~~~~v~~~~~~g~~~~~~~l---~~~~~p~giavdp~~g~-- 239 (430)
T 3tc9_A 202 -------------------------------------NDRPNNYILTRESGFKVITEL---TKGQNCNGAETHPINGE-- 239 (430)
T ss_dssp -------------------------------------TTSEEEEEEEGGGTSCSEEEE---EECSSCCCEEECTTTCC--
T ss_pred -------------------------------------cccceEEEEeCCCceeeeeee---ccCCCceEEEEeCCCCE--
Confidence 0123455566544322 222 11224567889996555
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC--CCccccceeecCCCCEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~--~~~~~~~p~~SpDG~~l~f 333 (771)
|+++.+ ...+|++++. +++....+.. ........+|+|||++|++
T Consensus 240 --lyv~d~--------------~~~~V~~~~~-----------------~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 240 --LYFNSW--------------NAGQVFRYDF-----------------TTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp --EEEEET--------------TTTEEEEEET-----------------TTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred --EEEEEC--------------CCCEEEEEEC-----------------CCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 777652 2347999997 5554423221 1223567899999998877
Q ss_pred EecCCCCCCCCccccccceeeecCC
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
..... .+|++++.+.
T Consensus 287 ~d~~~----------~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQ----------HYILRSDYDW 301 (430)
T ss_dssp EETTT----------TEEEEEEEET
T ss_pred EECCC----------CEEEEEeCCc
Confidence 76542 4688877654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.18 Score=51.86 Aligned_cols=109 Identities=15% Similarity=0.006 Sum_probs=63.6
Q ss_pred CceEEEEEccCCceeeccCCC--CCCccceEEEecCCCCCccEEEEEee--cCcceeeee-eeeccCCceeEEEeccccc
Q 004149 217 QPSLFVININSGEVQAVKGIP--KSLSVGQVVWAPLNEGLHQYLVFVGW--SSETRKLGI-KYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~--~~~~~~~~~wspDg~~~~~~l~~~~~--~~~~~~~g~-~~~~~~~~~l~~~d~~~~~ 291 (771)
...||.++.+++..+.+.... .-....+....+||+ +++... ..++..... .+.....+.||+++.
T Consensus 140 ~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-----fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~---- 210 (355)
T 3sre_A 140 TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-----FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP---- 210 (355)
T ss_dssp EEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-----EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT----
T ss_pred eEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-----EEecCCcEeCCcccccchhhccCCccEEEEEEC----
Confidence 356777777766554442111 122567888999987 555432 111100000 000012357999874
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
++.+.+.........++|||||++|++.... ..+|+++++...
T Consensus 211 ---------------~~~~~~~~~l~~pNGia~spDg~~lYvadt~----------~~~I~~~~~~~~ 253 (355)
T 3sre_A 211 ---------------NDVRVVAEGFDFANGINISPDGKYVYIAELL----------AHKIHVYEKHAN 253 (355)
T ss_dssp ---------------TCCEEEEEEESSEEEEEECTTSSEEEEEEGG----------GTEEEEEEECTT
T ss_pred ---------------CeEEEeecCCcccCcceECCCCCEEEEEeCC----------CCeEEEEEECCC
Confidence 3555555444556789999999999887754 357999998643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 771 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 9e-21 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 2e-18 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 5e-16 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 2e-15 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 8e-14 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 1e-12 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 1e-12 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 2e-12 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 3e-11 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 7e-11 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 1e-10 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 2e-10 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 5e-10 | |
| d1lzla_ | 317 | c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [Ta | 2e-08 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 7e-08 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 2e-07 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 1e-06 | |
| d1jkma_ | 358 | c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, | 2e-06 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 5e-06 | |
| d1u4na_ | 308 | c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus a | 6e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 2e-05 | |
| d1tqha_ | 242 | c.69.1.29 (A:) Carboxylesterase Est {Bacillus stea | 3e-05 | |
| d1tcaa_ | 317 | c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Cand | 3e-05 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 6e-05 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 8e-05 | |
| d2h1ia1 | 202 | c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cer | 2e-04 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 2e-04 | |
| d2r8ba1 | 203 | c.69.1.14 (A:44-246) Uncharacterized protein Atu24 | 3e-04 | |
| d1jfra_ | 260 | c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [Ta | 4e-04 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.6 bits (223), Expect = 9e-21
Identities = 32/237 (13%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 538 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 32 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 91
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+ D + A+ ++ + ++V V G +GG+L+T+++ + +
Sbjct: 92 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPI 151
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714
++ + ++ + +
Sbjct: 152 TDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPT-----------A 200
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
D ++ + + L + ++P++ H + +I +F + +
Sbjct: 201 DEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 257
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 84.8 bits (208), Expect = 2e-18
Identities = 34/253 (13%), Positives = 69/253 (27%), Gaps = 36/253 (14%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR---------------------G 576
P +V G + F S+GY +++ R
Sbjct: 83 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 139
Query: 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 140 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 199
Query: 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696
+ LC+ V D + + ++ +D +
Sbjct: 200 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVN--- 256
Query: 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756
++ K P +F +G D P S ++ ++P + H
Sbjct: 257 --FAARAKIPALFSVGLMDNICPPSTVFAAYNYY---AGPKEIRIYPYNNHEGGGSFQAV 311
Query: 757 ESFLNIGLWFKKY 769
E + KK
Sbjct: 312 EQV----KFLKKL 320
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 76.4 bits (186), Expect = 5e-16
Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 16/234 (6%)
Query: 538 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
PL++ ++ GP S + + S+ + + RGS G++ + ++ ++G+
Sbjct: 33 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 92
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+V D + A MG + ++ + G S+GG++T+ ++G F A P+
Sbjct: 93 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWE 152
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714
+ +S + + + + G
Sbjct: 153 YYDSVYTERYMGLPTPEDNLDH-------------YRNSTVMSRAENFKQVEYLLIHGTA 199
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
D V Q ++AL + GV+ + + + ++ HGI + + ++ + K+
Sbjct: 200 DDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 75.6 bits (184), Expect = 2e-15
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 27/248 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 594 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 703
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFD---IMNLADRV 257
Query: 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763
K P + +G D P S L + ++ V+ H
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHL---ETKKELKVYRYFGHEYIPAFQT-----EKL 309
Query: 764 LWFKKYCK 771
+FK+ K
Sbjct: 310 AFFKQILK 317
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 70.2 bits (170), Expect = 8e-14
Identities = 33/242 (13%), Positives = 57/242 (23%), Gaps = 11/242 (4%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P + +GG + +YS S +L V G E Q+
Sbjct: 37 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 96
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
D + K + G G L L
Sbjct: 97 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 156
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
I + S K F H+ + L D R
Sbjct: 157 HKYTIGHAWTTDYGCSDSKQHFEWLIKYSP---LHNVKLPEADDIQYPSMLLLTADHDDR 213
Query: 718 VPVSNGLQYARALREKGVETK-------VIVFPNDVHGIERPQSD-FESFLNIGLWFKKY 769
V + L++ L+ ++ + V HG +P + E ++ + +
Sbjct: 214 VVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARC 273
Query: 770 CK 771
Sbjct: 274 LN 275
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 66.8 bits (161), Expect = 1e-12
Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 14/234 (5%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 40 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 99
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
DV A + GLA+ + + P F A A + + M
Sbjct: 100 EDVSAAARWARESGLASELYIMGYSYGGYMT--LCALTMKPGLFKAGVAGASVVDWEEMY 157
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
+D ++E ++ S+SPI+H+ ++K P + D R
Sbjct: 158 ELSDAAFRNFIEQLTGGSRE------------IMRSRSPINHVDRIKEPLALIHPQNDSR 205
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
P+ L+ L +G + + P+ H I + + L + +
Sbjct: 206 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 259
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 66.2 bits (160), Expect = 1e-12
Identities = 26/231 (11%), Positives = 50/231 (21%), Gaps = 46/231 (19%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P++ +L G L ++ V Y+ +L F +
Sbjct: 44 PILYMLDGNAVMDRLDDELLKQ-LSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRK 102
Query: 598 ND--------------------VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 637
D V + + + G S+GG +
Sbjct: 103 TDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSS 162
Query: 638 PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697
+ + +P + + ++
Sbjct: 163 SYFR-SYYSASPSLGRGYDALLSRVTAVEPLQ------------------------FCTK 197
Query: 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
+ T +S L++KGV FPN HG
Sbjct: 198 HLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHG 248
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 66.6 bits (162), Expect = 2e-12
Identities = 20/150 (13%), Positives = 36/150 (24%), Gaps = 15/150 (10%)
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE--S 670
NP+ V+V G + GG++ L D F P C
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAG-----------GPYDCARNQYY 56
Query: 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 730
+ + ++ + S + + G+ D V + Q L
Sbjct: 57 TSCMYNGYPSITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQL 116
Query: 731 REK--GVETKVIVFPNDVHGIERPQSDFES 758
+ VH +
Sbjct: 117 GNFDNSANVSYVTTTGAVHTFPTDFNGAGD 146
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 62.1 bits (149), Expect = 3e-11
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 34/238 (14%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
L++ LHG S L + G+ LL + S + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 598 NDVLT----AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
L A + + + GGS G F+ L+ + A +
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPM 142
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
L G + + + P + L G+
Sbjct: 143 KLPQGQVVEDPGVL---------------------ALYQAPPATRGEAYGGVPLLHLHGS 181
Query: 714 QDLRVPVSNGLQYARALREKGVETKV--IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
+D VP++ + ALR E ++ V H + + + +
Sbjct: 182 RDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTP-----LMARVGLAFLEHW 234
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 61.9 bits (149), Expect = 7e-11
Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 22/233 (9%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
I++ G + ++ +LS+ G+ + + +G ++ G +
Sbjct: 33 NTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSL 90
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA---------RN 648
V + + ++ S + +I F+ A
Sbjct: 91 CTVYHWLQTK------GTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDTLEK 144
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
L L + ++P+ E + + + S + ++ P I
Sbjct: 145 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHH---WDTLDSTLDKVANTSVPLI 201
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLN 761
D V + + K+ H + +F
Sbjct: 202 AFTANNDDWVKQEEVYDMLAHI--RTGHCKLYSLLGSSHDLGENLVVLRNFYQ 252
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 61.9 bits (149), Expect = 1e-10
Identities = 33/277 (11%), Positives = 71/277 (25%), Gaps = 50/277 (18%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
+ ++ P+ + + + G++ + V G+ Q +
Sbjct: 108 KELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQI 162
Query: 598 NDVLTAIDHVIDMGLANPS--------------KVTVVGGSHGGFLTTHLIGQAPDKFVA 643
+ ID + A S KV + G S+ G + +
Sbjct: 163 YSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLEL 222
Query: 644 AAARNPLCNLALMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR---------- 690
A + + G P E +++ + D +
Sbjct: 223 ILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLA 282
Query: 691 ----------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734
+H ++ + + KVK + + G QD V + +AL +G
Sbjct: 283 EMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALP-EG 341
Query: 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
+ H + I +F
Sbjct: 342 HAKHAFLHRGA-HIYMNSWQSIDFSETINAYFVAKLL 377
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.5 bits (145), Expect = 2e-10
Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 16/217 (7%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
P++V HGG + +L + +++ V+YR + P V
Sbjct: 80 PVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH------KFPAAV--Y 131
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
D D + + +PSK+ V G S GG L + A D L +
Sbjct: 132 DCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVV 191
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTES----PSVEDLTRFHSKSPISHISKVKTPTIFLL 711
+ E + + S E+ S I + P + +
Sbjct: 192 NFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIIT 251
Query: 712 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
D G + + LR GVE ++ + +HG
Sbjct: 252 AEYD--PLRDEGEVFGQMLRRAGVEASIVRYRGVLHG 286
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.2 bits (142), Expect = 5e-10
Identities = 33/228 (14%), Positives = 58/228 (25%), Gaps = 22/228 (9%)
Query: 538 PLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPGK 591
P + +L G S + + + G S+++ S + + A +
Sbjct: 35 PALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQ 94
Query: 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651
+ + P+ VVG S L P +FV A A + L
Sbjct: 95 TYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLL 154
Query: 652 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 711
+ + +G T + G R + + T
Sbjct: 155 DPSQAMGPTL--IGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYC 212
Query: 712 GAQDLRVPVSNGL--------------QYARALREKGVETKVIVFPND 745
G N L ++ A G V FP+
Sbjct: 213 GNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDS 260
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Score = 54.5 bits (129), Expect = 2e-08
Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--------DIPD 664
+PS++ V G S GG L + +A D+ V A L L D P
Sbjct: 148 IDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNFVDTPL 207
Query: 665 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724
W + S ED +P P +L +L G+
Sbjct: 208 WHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTM-ELDPLRDEGI 266
Query: 725 QYARALREKGVETKVIVFPNDVHG 748
+YA L + GV ++ FP HG
Sbjct: 267 EYALRLLQAGVSVELHSFPGTFHG 290
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 7e-08
Identities = 21/229 (9%), Positives = 57/229 (24%), Gaps = 30/229 (13%)
Query: 537 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 589
++ +HGG + + ++ + + Y + P
Sbjct: 31 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEY-----------RLSP 79
Query: 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649
+++ D ++ I ++ + + +VG S G ++ D +
Sbjct: 80 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 137
Query: 650 LCNLALMVGTTDIPDWC----------YVESYGSKGKDSFTESPSVEDLTRFHSKSPISH 699
L + Y E E+
Sbjct: 138 QMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKA 197
Query: 700 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
+S+ + D + + L++ + K+ + +H
Sbjct: 198 LSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 246
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 27/207 (13%), Positives = 47/207 (22%), Gaps = 30/207 (14%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596
PL V+L G + S+ L L+ V LP
Sbjct: 45 PLAVLLDGEFWAQSMPV-WPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLA 103
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V L + VI + V G S GG + P++F +++
Sbjct: 104 VQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 163
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
G + + +S + G ++
Sbjct: 164 GGQQEGVLLEKL---------------------------KAGEVSAEGLRIVLEAGIREP 196
Query: 717 RVPVSNGLQYARALREKGVETKVIVFP 743
+ +N L
Sbjct: 197 MIMRAN-QALYAQLHPIKESIFWRQVD 222
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 11/140 (7%)
Query: 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL 578
+ + + + + GY + + RG
Sbjct: 52 RNAPILLTRTPYNAKGR------ANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKY 105
Query: 579 GFGEE-----ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 633
G + + + D +D ++ + +V + G S+ GF
Sbjct: 106 GSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMA 165
Query: 634 IGQAPDKFVAAAARNPLCNL 653
+ AA +P+ +
Sbjct: 166 LLDPHPALKVAAPESPMVDG 185
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} Length = 358 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 17/142 (11%)
Query: 622 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 681
G S GG L A + A ++ + G + S ++
Sbjct: 188 GESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSLVENDGYF 247
Query: 682 SPSV---------------EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726
+ + + P + + D G+ +
Sbjct: 248 IENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELD--PLRDEGIAF 305
Query: 727 ARALREKGVETKVIVFPNDVHG 748
AR L GV+ V VHG
Sbjct: 306 ARRLARAGVDVAARVNIGLVHG 327
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 14/130 (10%)
Query: 538 PLIVVLH----GGPHSVSLSSYSKSL-----AFLSSVGYSLLIVNYRGSLGFGEE----- 583
P+++ G S + K L GY + + RG G +
Sbjct: 51 PIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTR 110
Query: 584 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643
L+ D ID ++ + KV ++G S+ GF +
Sbjct: 111 PLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKV 170
Query: 644 AAARNPLCNL 653
A +P+ +
Sbjct: 171 AVPESPMIDG 180
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Score = 46.4 bits (108), Expect = 6e-06
Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 14/186 (7%)
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+D D L I +P+++ V G S GG L A ++ A A L +
Sbjct: 124 EDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS 183
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTES------PSVEDLTRFHSKSPISHISKVKTPTI 708
P + G + S+E+LT + P
Sbjct: 184 TGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAY 243
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-----PQSDFESFLNIG 763
D G YA AL + GV+ ++ F + +HG + P + ++ + I
Sbjct: 244 IATAQYD--PLRDVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGAT-KALVRIA 300
Query: 764 LWFKKY 769
+
Sbjct: 301 EKLRDA 306
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 20/223 (8%)
Query: 537 DPLIVVLHG---GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593
+ +L GP + + ++ L+ G S++ G+ Q +
Sbjct: 27 PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPA-GGAYSMYTNWEQDGSKQWD 85
Query: 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
+ ++ D + P VG + GG+ L PD+F A + +
Sbjct: 86 TFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYP 142
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
+ ++ +G + +P + S +++ T
Sbjct: 143 SNTTTNG--AIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPT 200
Query: 714 QDLRVPVSNGL-----------QYARALREKGVETKVIVFPND 745
+ + + R G FP
Sbjct: 201 NPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHNGHFDFPAS 243
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Score = 44.1 bits (102), Expect = 3e-05
Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 19/221 (8%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+ +++LHG + + FL S GY+ Y+G EE V +
Sbjct: 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHGVPPEE-------LVHTGP 61
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------FVAAAARN 648
+ ++ + K+ V G S GG + L P + +
Sbjct: 62 DDWWQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEET 121
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
+ + E + + + H+ + PT
Sbjct: 122 MYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTF 181
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749
+ D + + + + + + H I
Sbjct: 182 VVQARHDEMINPDSANIIYNEIESPVKQ--IKWYEQSGHVI 220
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Score = 44.3 bits (104), Expect = 3e-05
Identities = 27/203 (13%), Positives = 54/203 (26%), Gaps = 34/203 (16%)
Query: 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599
I+++ G + S S + + +GY+ ++ + +
Sbjct: 34 ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF-MLND----------TQVNTEY 82
Query: 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD------KFVAAAARNPLCNL 653
++ AI + N K+ V+ S GG + + P + +A A
Sbjct: 83 MVNAITALYAGSGNN--KLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY----- 135
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
GT + T S L + V T ++ A
Sbjct: 136 ---KGTVLAGPLDALAVSAPSVWQQTTGSALTTALRNAGGLTQ-----IVPTTNLY--SA 185
Query: 714 QDLRVPVSNGLQYARALREKGVE 736
D V + +
Sbjct: 186 TDEIVQPQVSNSPLDSSYLFNGK 208
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 6e-05
Identities = 28/229 (12%), Positives = 55/229 (24%), Gaps = 22/229 (9%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPG 590
+ +L G + + + G S+++ S + + + +
Sbjct: 29 PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQN 88
Query: 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650
+ + +P+ VG S G L P +F AA+ +
Sbjct: 89 YTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGF 148
Query: 651 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 710
N + T + G +S S R I + T
Sbjct: 149 LNPSESWWPT--LIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVY 206
Query: 711 LGAQDLRVPVSNGL--------------QYARALREKGVETKVIVFPND 745
G + + + G V FP +
Sbjct: 207 CGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPN 255
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 42.9 bits (99), Expect = 8e-05
Identities = 20/220 (9%), Positives = 48/220 (21%), Gaps = 29/220 (13%)
Query: 538 PLIVVLHGGPHSVS---------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588
+ ++HGG + + + ++ ++ + G + Q
Sbjct: 56 NIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEF 115
Query: 589 PGKVGS-QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 647
V + A A+ G + GG T +++ D
Sbjct: 116 RQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPL 175
Query: 648 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 707
+ G + + ++ SK + +
Sbjct: 176 SG----DYWYGNSPQDKANSIAEAINRSGL---------------SKREYFVFAATGSED 216
Query: 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747
I + + +V P H
Sbjct: 217 IAYANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATH 256
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 25/233 (10%), Positives = 60/233 (25%), Gaps = 49/233 (21%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ- 595
P++++LHG G + + L ++ + +SV V G F + + +
Sbjct: 15 PVLLLLHGTGGNELDLLPLAEIVDSEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIF 74
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
++ +D + + + +G S+G + L+ + A +P+
Sbjct: 75 RTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG 134
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715
M ++ + D
Sbjct: 135 MQLANLAGKSVFIAAG-----------------------------------------TND 153
Query: 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
+ + L + H + + E W+ K
Sbjct: 154 PICSSAESEELKVLLENANANVTMHWENRG-HQL--TMGEVEKAKE---WYDK 200
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 33/226 (14%), Positives = 58/226 (25%), Gaps = 46/226 (20%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNY-RGSLGFGEEALQSLPGKVGSQ 595
+ +LHG G +L ++ +A +++ + + G F K
Sbjct: 24 ECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILA 83
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ + N T +G S+G L + L+ P AA P+ L
Sbjct: 84 ETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH 143
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715
+ T + + GA D
Sbjct: 144 VPATDLAGIRTLI-----------------------------------------IAGAAD 162
Query: 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ-SDFESFL 760
L G E + P+ H I P + +L
Sbjct: 163 ETYG-PFVPALVTLLSRHGAEVDARIIPSG-HDIGDPDAAIVRQWL 206
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 33/235 (14%), Positives = 64/235 (27%), Gaps = 53/235 (22%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
PL V+LHG G + L +++ L V G ++ G D
Sbjct: 18 PLFVLLHGTGGDENQFFDFGARLLPQATI---LSPVGDVSEHGAARFFRRTGEGVYDMVD 74
Query: 597 VNDVLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+ + I V +G S+G + +++ + P+ F AA +PL
Sbjct: 75 LERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFE 134
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714
+ + + +
Sbjct: 135 PKISPAKPTRRVLITAG-----------------------------------------ER 153
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
D PV +L+ +G + + P H I + ++ + Y
Sbjct: 154 DPICPVQLTKALEESLKAQGGTVETVWHPGG-HEI--RSGEIDAVRG---FLAAY 202
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 26/237 (10%), Positives = 64/237 (27%), Gaps = 66/237 (27%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
+V+ G S S + L+S G+ + ++ +L +
Sbjct: 53 GAVVISPGFTAYQS--SIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRG 98
Query: 598 NDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
+L+A+D++ + +++ V+G S GG
Sbjct: 99 RQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGG------------------------GG 134
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
+L + + + +++TPT+ +
Sbjct: 135 SLEAAKSRTSLKAAI---------------------PLTGWNTDKTWPELRTPTLVVGAD 173
Query: 714 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL-WFKKY 769
D PV+ + ++ + H + + W K++
Sbjct: 174 GDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD--TTIAKYSISWLKRF 228
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.93 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.92 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.92 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.91 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.91 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.9 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.87 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.86 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.85 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.84 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.84 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.84 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.83 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.82 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.82 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.82 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.82 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.82 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.81 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.81 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.8 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.8 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.8 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.8 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.79 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.79 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.79 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.78 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.78 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.78 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.78 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.77 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.77 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.76 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.76 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.75 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.75 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.75 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.74 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.73 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.73 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.73 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.73 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.72 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.72 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.72 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.72 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.72 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.7 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.7 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.7 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.7 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.7 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.69 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.68 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.68 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.67 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.66 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.66 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.66 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.65 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.64 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.59 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.55 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.53 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.53 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.48 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.47 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.46 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.44 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.42 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.42 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.42 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.41 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.4 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.38 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.33 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.33 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.3 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.3 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.29 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.29 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.28 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.25 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.25 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.25 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.23 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.22 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.18 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.15 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.14 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.13 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.12 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.11 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.1 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.1 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 99.09 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.07 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.06 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.06 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 99.05 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.04 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.02 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.01 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.99 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.91 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.89 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.86 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.85 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.85 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.84 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.83 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.78 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.77 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.77 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.74 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.72 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.69 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.68 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.67 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.64 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.62 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.61 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.58 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.55 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.55 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.53 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.53 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.53 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.5 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.43 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.41 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.36 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.34 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.29 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.25 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.23 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.17 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.17 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.11 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 98.04 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.03 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.01 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.99 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.96 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.95 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.91 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 97.81 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.74 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.62 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.57 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.54 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.47 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.42 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.35 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.3 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.22 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.04 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 96.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.94 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 96.74 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.73 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.61 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.6 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.26 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.25 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.5 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 93.8 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 90.25 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 89.47 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 89.0 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 88.36 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 87.97 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 86.17 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 81.41 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=3.3e-32 Score=273.75 Aligned_cols=244 Identities=23% Similarity=0.360 Sum_probs=208.4
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+.+.||.+|+++++.|++ ..++.|+||++|||++......|...+..|+++||+|+++|+|+.+++|.++.......
T Consensus 16 ~~~s~dG~~i~~~l~~p~~--~~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g~~~~~~~~~~ 93 (260)
T d2hu7a2 16 WVESFDGSRVPTYVLESGR--APTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGD 93 (260)
T ss_dssp EEECTTSCEEEEEEEEETT--SCSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSCHHHHHTTTTC
T ss_pred EEECCCCCEEEEEEEeCCC--CCCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccccccccccccccc
Confidence 4567789999999999975 45678999999998877666778888999999999999999999999999988777777
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
++..+++|+.++++++.++. +.++++|+|+|+||.+++.++..+|+.+++++..+|+.++..+..........+....
T Consensus 94 ~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T d2hu7a2 94 PCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQL 171 (260)
T ss_dssp TTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCHHHHHHHHHH
T ss_pred cchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhcccccccccccccc
Confidence 77788999999999999874 6789999999999999999999999999999999999987766544322111111111
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.....+.+...+|...++++++|+|++||+.|.+||++++.+++++|+++|+++++++||+++|++..
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~~ 239 (260)
T d2hu7a2 172 ------------TGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINT 239 (260)
T ss_dssp ------------HCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEETTCCSSCCB
T ss_pred ------------cccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEECcCCCCCCC
Confidence 11234667788999999999999999999999999999999999999999999999999999999987
Q ss_pred CCChHHHHHHHHHHHHHHhC
Q 004149 752 PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ~~~~~~~~~~i~~wl~~~l~ 771 (771)
.++..+++..+++||.+|||
T Consensus 240 ~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 240 MEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHhc
Confidence 77778899999999999985
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-31 Score=267.81 Aligned_cols=241 Identities=17% Similarity=0.257 Sum_probs=189.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcc--hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~--~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
..+|.+|++++|.|++++.++++|+||++|||++... ...| ......|+++||+|+++||||++++|..+......+
T Consensus 9 ~~dg~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~ 88 (258)
T d1xfda2 9 EIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRR 88 (258)
T ss_dssp EETTEEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTC
T ss_pred eeCCeEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhcc
Confidence 4589999999999999888889999999999865432 2233 345667899999999999999999998888777777
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhhhhcCCCCCcchh
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCY 667 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~ 667 (771)
++..++.|+.++++++.+++.+|++||+++|+|+||+++++++...++ .+++.+..+|+....... ....
T Consensus 89 ~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 162 (258)
T d1xfda2 89 LGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYA------SAFS 162 (258)
T ss_dssp TTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB------HHHH
T ss_pred chhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeeccc------cccc
Confidence 888889999999999999999999999999999999999988776543 567777766654321110 0000
Q ss_pred hhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004149 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
...++. + ......+...++...+.++ ++|+|++||+.|.+||++++.+++++|++.|++++++++|+++
T Consensus 163 ~~~~~~---------~-~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~~ 232 (258)
T d1xfda2 163 ERYLGL---------H-GLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDES 232 (258)
T ss_dssp HHHHCC---------C-SSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCC
T ss_pred cccccc---------c-ccchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 011110 0 0111234445666666664 6899999999999999999999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 747 HGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|++........+++.+++||+++||
T Consensus 233 H~~~~~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 233 HYFTSSSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhC
Confidence 9998777777788999999999986
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=2.7e-30 Score=259.52 Aligned_cols=246 Identities=17% Similarity=0.297 Sum_probs=200.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~---~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~ 588 (771)
.+...+|.++.+++++|+++++.+++|+||++|||++.... ..+......++++||+|+.+||||+++++..+.+..
T Consensus 7 ~~~~~~~~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~~~~~~ 86 (258)
T d2bgra2 7 DFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAI 86 (258)
T ss_dssp EEEEETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGG
T ss_pred EEEEeCCcEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchHHHHhh
Confidence 34456789999999999999888999999999997544322 233345567789999999999999998998888888
Q ss_pred CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 589 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
..+++..+..++.++++++.++..+|+++|+++|+|+||.++++++..+|+++.+++..++......... ....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 160 (258)
T d2bgra2 87 NRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS------VYTE 160 (258)
T ss_dssp TTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH------HHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecccccccccc------cccc
Confidence 8888888899999999999999889999999999999999999999999999999988887654332210 0000
Q ss_pred hhccCCCCCcCCCCCChhhHHHHhhcCccccccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004149 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
...+. .......+.+...+++..+.+++ +|+|++||++|.+||+.++++++++|+++|+++++++||+++|
T Consensus 161 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~g~~H 232 (258)
T d2bgra2 161 RYMGL--------PTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 232 (258)
T ss_dssp HHHCC--------CSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCT
T ss_pred hhccc--------ccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 11110 11224456677788888888875 7999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhC
Q 004149 748 GIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
++........+++.+.+||+++|.
T Consensus 233 ~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 233 GIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHHHhc
Confidence 988777777889999999999974
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=2.9e-24 Score=217.84 Aligned_cols=250 Identities=20% Similarity=0.217 Sum_probs=186.6
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
+++..||.+|+++++.|++++++++.|+||++|||++......+.. ....++..++.++..++++...++.........
T Consensus 11 ~~~s~DG~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (280)
T d1qfma2 11 FYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGIL 90 (280)
T ss_dssp EEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSG
T ss_pred EEECCCCCEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccccchhhhhcccc
Confidence 5667789999999999998888899999999999988765554433 445667788999999998877666655544444
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
........+...+..+...+...+..+++++|+|.||.++...+...++.+++++...++.++...........+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (280)
T d1qfma2 91 ANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYG 170 (280)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHC
T ss_pred cccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccccccccceeccc
Confidence 44445566777777777777778889999999999999999999999999999999999887765544333222211111
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCc------cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh-------CCCCE
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSP------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE-------KGVET 737 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp------~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~-------~g~~~ 737 (771)
. .............+| +.......+|+||+||++|.+||+.++++++++|++ .|+++
T Consensus 171 ~----------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~ 240 (280)
T d1qfma2 171 C----------SDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPL 240 (280)
T ss_dssp C----------TTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCE
T ss_pred C----------CCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcE
Confidence 0 111233333333333 344444456899999999999999999999999965 47789
Q ss_pred EEEEeCCCCccCCCCCC-hHHHHHHHHHHHHHHhC
Q 004149 738 KVIVFPNDVHGIERPQS-DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~-~~~~~~~i~~wl~~~l~ 771 (771)
+++++|++||++..+.. ..+.+.++++||++|||
T Consensus 241 ~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~ 275 (280)
T d1qfma2 241 LIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 275 (280)
T ss_dssp EEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999875533 34666789999999997
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.3e-23 Score=208.57 Aligned_cols=263 Identities=16% Similarity=0.204 Sum_probs=197.6
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 004149 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 132 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~ 132 (771)
++|||...... ++...+||++++ ++.+.++|+..+ ..+..|+|||||++|||++... +..+++.+. .+
T Consensus 4 ~~iay~~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~sP~wSPDGk~IAf~~~~~-~~~~~~~~~~~~ 72 (269)
T d2hqsa1 4 TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLAN 72 (269)
T ss_dssp CEEEEEEECSS---SSCCEEEEEEET--TSCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTT
T ss_pred CeEEEEEEeCC---CCceEEEEEEcC--CCCCcEEEecCC-----CceeeeEECCCCCEEEEEEeec-cCcceeeeeccc
Confidence 58999876643 344568999775 566888888776 5678999999999999998876 666788888 55
Q ss_pred CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCccc
Q 004149 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 212 (771)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 212 (771)
+..++++...... ..+.|||||++|++.....
T Consensus 73 ~~~~~~~~~~~~~----------~~~~~spdg~~i~~~~~~~-------------------------------------- 104 (269)
T d2hqsa1 73 GAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT-------------------------------------- 104 (269)
T ss_dssp CCEEEEECCSSCE----------EEEEECTTSSEEEEEECTT--------------------------------------
T ss_pred CceeEEeeeeccc----------ccceecCCCCeeeEeeecC--------------------------------------
Confidence 5656666554333 4889999999999986543
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
....+............. .........+.|+++++. +++++... ...+|+..++
T Consensus 105 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~------------g~~~i~~~~~----- 158 (269)
T d2hqsa1 105 ---GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQA------------GRPQVYKVNI----- 158 (269)
T ss_dssp ---SSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE----EEEEECTT------------SSCEEEEEET-----
T ss_pred ---Cccceeecccccccceee--eecccccccccccccccc----ceeccccc------------CCceEeeeec-----
Confidence 224555555555555555 445555667899999998 88887432 2347999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004149 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
.++...+++........|.|||||+.|+|.+.+. +...|++++..++..+.+....
T Consensus 159 ------------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~---- 214 (269)
T d2hqsa1 159 ------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTF---- 214 (269)
T ss_dssp ------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCEEECCCSS----
T ss_pred ------------ccccceeeecccccccccccccccceeEEEeecC--------CceeeeEeecccccceEeecCc----
Confidence 7778888888888889999999999999999875 2467888887765543221111
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEee
Q 004149 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 442 (771)
....+.|||||+.|+|.+...+...||+++++++..++|+...+....+.|||
T Consensus 215 -----------------~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 215 -----------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp -----------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred -----------------cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 12356899999999999998888999999999999999998877666677876
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=3.8e-24 Score=221.32 Aligned_cols=241 Identities=18% Similarity=0.178 Sum_probs=170.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
++...+|.+|+++++.|+ ..++.|+||++||+++. ...+...+..|+++||+|+++|+||.+.++..........
T Consensus 60 ~~~~~dg~~i~~~l~~P~---~~~~~P~vv~~HG~~~~--~~~~~~~~~~la~~Gy~vi~~D~rG~G~s~~~~~~~~~~~ 134 (318)
T d1l7aa_ 60 TYKSFGNARITGWYAVPD---KEGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEEGGGEEEEEEEEEES---SCSCEEEEEEECCTTCC--SGGGHHHHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEECCCCcEEEEEEEecC---CCCCceEEEEecCCCCC--ccchHHHHHHHHHCCCEEEEEeeCCCCCCCCCcccchhhh
Confidence 455567899999999998 46789999999997665 4467778889999999999999999776654332111111
Q ss_pred cc--------------ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc-chhhh
Q 004149 592 VG--------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLALM 656 (771)
Q Consensus 592 ~~--------------~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~~~ 656 (771)
.. ...+.|...+++++..++.++.++++++|+|+||..++..+...++ ++++++..|.. +....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 213 (318)
T d1l7aa_ 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHHH
T ss_pred hcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEEeccccccHHHH
Confidence 10 1124678888899999988999999999999999999999998765 55566655543 32222
Q ss_pred hcCCCCCcchhhhhccCCCCCcCCCCC--ChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 657 VGTTDIPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
........+.....+.. ..... ...........++...++++++|+|++||++|.+||++++.++++++ +
T Consensus 214 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l---~ 285 (318)
T d1l7aa_ 214 IDVALEQPYLEINSFFR-----RNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHL---E 285 (318)
T ss_dssp HHHCCSTTTTHHHHHHH-----HSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHC---C
T ss_pred hhcccccccchhhhhhh-----ccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHHHc---C
Confidence 11111111111000000 00000 01122233455667778999999999999999999999999988776 4
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
.++++++|++++|.+. .+..+++++||++|||
T Consensus 286 ~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 286 TKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp SSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCC
Confidence 5789999999999764 4778899999999997
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=1.2e-23 Score=217.94 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=169.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC-
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG- 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~- 590 (771)
++.+.+|.+|+++++.|++ ..++.|+||++||++.... +......++++||.|+++|+||.+.++.........
T Consensus 59 ~~~s~dG~~l~~~l~~P~~--~~~~~P~Vv~~hG~~~~~~---~~~~~~~~a~~G~~v~~~D~rG~G~s~~~~~~~~~~~ 133 (322)
T d1vlqa_ 59 TFSGYRGQRIKGWLLVPKL--EEEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE 133 (322)
T ss_dssp EEECGGGCEEEEEEEEECC--SCSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCS
T ss_pred EEECCCCcEEEEEEEeccC--CCCCccEEEEecCCCCCcC---cHHHHHHHHhCCCEEEEeeccccCCCCCCcccccccc
Confidence 4556678999999999985 4567899999999776532 223345788999999999999977654432111000
Q ss_pred --------------------CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 591 --------------------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 591 --------------------~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
......+.|+.++++++..++.+|++|++++|+|+||++++.++...+ +++++++..|.
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~~~a~v~~~~~ 212 (322)
T d1vlqa_ 134 GPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPF 212 (322)
T ss_dssp SSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCC
T ss_pred ccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-CccEEEEeCCc
Confidence 000112568899999999998899999999999999999999888765 58888877775
Q ss_pred cch-hhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004149 651 CNL-ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 651 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~ 729 (771)
... ...........+.....+.. ............+...+|...+.++++|+|++||++|.++|++++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~~~~~~~ 287 (322)
T d1vlqa_ 213 LCHFRRAVQLVDTHPYAEITNFLK-----THRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 287 (322)
T ss_dssp SCCHHHHHHHCCCTTHHHHHHHHH-----HCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred cccHHHHHhhccccchhhHHhhhh-----cCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 532 22221111111111111000 000111233345556789999999999999999999999999998877765
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+ +.++++++||+++|.+. ........++||+++|+
T Consensus 288 ~---~~~~~l~~~p~~~H~~~----~~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 288 Y---AGPKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 322 (322)
T ss_dssp C---CSSEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred C---CCCeEEEEECCCCCCCc----cccCHHHHHHHHHHHhC
Confidence 5 56799999999999764 23344667899999985
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.91 E-value=2e-23 Score=218.43 Aligned_cols=229 Identities=15% Similarity=0.166 Sum_probs=162.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+|.++++.|+ ..++.|+||++||.... ...+....+.|+++||+|+++|+||. |.+.... ......
T Consensus 114 dg~~l~g~l~~P~---~~~~~P~Vi~~hG~~~~--~e~~~~~~~~l~~~G~~vl~~D~~G~---G~s~~~~---~~~~~~ 182 (360)
T d2jbwa1 114 DGIPMPVYVRIPE---GPGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPGQ---GEMFEYK---RIAGDY 182 (360)
T ss_dssp TTEEEEEEEECCS---SSCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTTS---GGGTTTC---CSCSCH
T ss_pred CCcccceEEEecC---CCCCceEEEEeCCCCcc--HHHHHHHHHHHHhcCCEEEEEccccc---cccCccc---cccccH
Confidence 5788999999997 46789999999996544 34566678889999999999999994 4442111 111112
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
..++..+++++.....+|.+||+|+|+||||++++.+|...| +++++|+.+|+.++....... ......+.
T Consensus 183 ~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~~~----~~~~~~~~---- 253 (360)
T d2jbwa1 183 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDLET----PLTKESWK---- 253 (360)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGGSC----HHHHHHHH----
T ss_pred HHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhhhh----hhhhHHHH----
Confidence 345667889999888899999999999999999999999877 589999999887653221110 00000000
Q ss_pred CcCCCCCChhh--HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC
Q 004149 677 DSFTESPSVED--LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 677 ~~~~~~~~~~~--~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
........+. .......+....+.++++|+|++||++|. +|++++..+++.+... +++++++++++|.... .
T Consensus 254 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~~--~~~l~~~~~g~H~~~~--~ 327 (360)
T d2jbwa1 254 -YVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE--HLNLVVEKDGDHCCHN--L 327 (360)
T ss_dssp -HHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG--GEEEEEETTCCGGGGG--G
T ss_pred -HhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcCCC--CeEEEEECCCCcCCCc--C
Confidence 0011111111 12233445556788999999999999998 6999999999887543 4788899999997542 2
Q ss_pred hHHHHHHHHHHHHHHhC
Q 004149 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~wl~~~l~ 771 (771)
..+....+.+||.++|.
T Consensus 328 ~~~~~~~i~dWl~~~L~ 344 (360)
T d2jbwa1 328 GIRPRLEMADWLYDVLV 344 (360)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 33567889999999873
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.1e-22 Score=220.35 Aligned_cols=341 Identities=14% Similarity=0.087 Sum_probs=207.7
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..||||++|+|..+...+-+......+|++++... ...+|+.... .......|.|||||++|||+++.+ +|
T Consensus 67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~--~~~~l~~~~~--~~~~l~~~~wSPDG~~iafv~~~n-----l~ 137 (465)
T d1xfda1 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPEV--SNAKLQYAGWGPKGQQLIFIFENN-----IY 137 (465)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTTC--CSCCCSBCCBCSSTTCEEEEETTE-----EE
T ss_pred EECCCCCeEEEEEcccceeEeeccccEEEEEccCC--ceeeccCccC--CccccceeeeccCCceEEEEecce-----EE
Confidence 45889999999876433333345678899888544 4445533221 113456799999999999998765 88
Q ss_pred EEe-cCCcceEEEecCC------cccccccCCCcc---cceeecCCCCeEEEEecCCCCCCCCccC-CCCCCCCCCccCC
Q 004149 128 ELW-SQSQLEKEFHVPQ------TVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSL-GSTKGGSSDKDCN 196 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~~~------~~~g~~~~~~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 196 (771)
.+. .++...++|.-.. +..+.+|.++.+ .++.|||||++|||...+..... .+.. .........
T Consensus 138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~-~~~~~~~~~~~~p~---- 212 (465)
T d1xfda1 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP-IMELPTYTGSIYPT---- 212 (465)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC-EEEECCCSSSSSCC----
T ss_pred EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccc-eeecccccccccce----
Confidence 888 6667777775321 112233433322 36789999999999875543321 1111 000000000
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-----CCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 197 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...+.| |..|+. .....|+++|++++..+.....+. +..+..+.|+||++. +++..++..
T Consensus 213 --~~~~~Y-p~~G~~---np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~----~~~~~nR~q----- 277 (465)
T d1xfda1 213 --VKPYHY-PKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV----AVTWLNRAQ----- 277 (465)
T ss_dssp --CEEEEC-CBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE----EEEEEETTS-----
T ss_pred --eeeeec-cccCCC---CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE----EEEEEcccc-----
Confidence 001111 111221 123579999999887654421111 223457899999985 555554333
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--C----ccccceeecCCCCEEEEEecCCCCCCCCc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--I----SSAFFPRFSPDGKFLVFLSAKSSVDSGAH 345 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~----~~~~~p~~SpDG~~l~f~~~~~~~~~g~~ 345 (771)
....|+.+|. .+++++.+... . .....|.|+|||+.++|+.....
T Consensus 278 ------~~~~i~~~d~-----------------~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~------ 328 (465)
T d1xfda1 278 ------NVSILTLCDA-----------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ------ 328 (465)
T ss_dssp ------CEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC------
T ss_pred ------ccceEEEEcC-----------------CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeee------
Confidence 2237888887 77776665422 1 12467999999999988754321
Q ss_pred cccccceeeec-------CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC--CeeEEE
Q 004149 346 SATDSLHRIDW-------PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVII 416 (771)
Q Consensus 346 ~~~~~l~~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~l~ 416 (771)
.+..+++.+.+ .++..+++|.+..+|..+ +.|.++++.|||++... ...+||
T Consensus 329 ~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i-------------------~~~d~~~~~vyF~a~~~~p~~~hly 389 (465)
T d1xfda1 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI-------------------LAYDEKGNKIYFLSTEDLPRRRQLY 389 (465)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE-------------------EEEETTTTEEEEEESSSCTTCCEEE
T ss_pred cccCceEEEEeccccccCCCceeEEeccCCceEEEE-------------------EEEcCCCCEEEEEEeCCCCCceEEE
Confidence 12345665543 333446777776655432 25888999999988754 466899
Q ss_pred EEECCCCcE-EEecCC---CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 417 SVNVSSGEL-LRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 417 ~~d~~tg~~-~~l~~~---~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+++++++.. ++|+.. .+.+....||+++++++..+++++.|++ .+.+..
T Consensus 390 ~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~-~~~~~~ 442 (465)
T d1xfda1 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMV-TVHNTT 442 (465)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCE-EEEETT
T ss_pred EEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeE-EEEECC
Confidence 999987654 344422 2244567899999999999999998874 444433
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.87 E-value=1.4e-21 Score=194.67 Aligned_cols=189 Identities=14% Similarity=0.111 Sum_probs=147.1
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
.+.+|.|.+ ..+++.|+||++||++.. ...+..++..|+++||.|+++|++|..... .....|+.
T Consensus 38 ~~~ly~P~~-~~~g~~P~Vv~~HG~~g~--~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~------------~~~~~d~~ 102 (260)
T d1jfra_ 38 GGTIYYPTS-TADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQP------------DSRGRQLL 102 (260)
T ss_dssp CEEEEEESC-CTTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCH------------HHHHHHHH
T ss_pred CEEEEEcCC-CCCCCccEEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeeCCCcCCc------------hhhHHHHH
Confidence 467888975 245678999999997655 345667889999999999999999843321 12357888
Q ss_pred HHHHHHHHc----CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 602 TAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 602 ~~i~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
++++++.+. +.+|.+||+++|||+||.+++.++...+ +++++|..+|...
T Consensus 103 ~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~------------------------- 156 (260)
T d1jfra_ 103 SALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNT------------------------- 156 (260)
T ss_dssp HHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCS-------------------------
T ss_pred HHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeecccc-------------------------
Confidence 889998874 4489999999999999999999998865 6788887776421
Q ss_pred cCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHH
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFE 757 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 757 (771)
.....++++|+|++||+.|.++|+++..+.+......+.+.+++.+++++|++....+ ..
T Consensus 157 -------------------~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~~-~~ 216 (260)
T d1jfra_ 157 -------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD-TT 216 (260)
T ss_dssp -------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSCC-HH
T ss_pred -------------------cccccccccceeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCCh-HH
Confidence 0112456799999999999999997755554445555778999999999998775555 46
Q ss_pred HHHHHHHHHHHHhC
Q 004149 758 SFLNIGLWFKKYCK 771 (771)
Q Consensus 758 ~~~~i~~wl~~~l~ 771 (771)
..+.+++||+.||+
T Consensus 217 ~~~~~~~wl~~~L~ 230 (260)
T d1jfra_ 217 IAKYSISWLKRFID 230 (260)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 77889999999985
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.86 E-value=6.3e-21 Score=181.90 Aligned_cols=195 Identities=11% Similarity=0.085 Sum_probs=142.9
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~---~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.++++.+..|... ...+.+++|++|+.+. ++....+...++.|+++||.|+.+||||.+.+...+ .....
T Consensus 18 G~l~~~~~~p~~~-~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~~------~~~~~ 90 (218)
T d2fuka1 18 GPLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGSF------DHGDG 90 (218)
T ss_dssp EEEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSCC------CTTTH
T ss_pred ccEEEEEEcCCCC-CCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCcc------CcCcc
Confidence 3799999988642 3345577888995332 211222445778899999999999999966543321 22334
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
..+|+.++++++.++. +.++++++|+||||.+++.++.+. .++++|+.+|..+... .
T Consensus 91 ~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~-----------------~-- 147 (218)
T d2fuka1 91 EQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD-----------------F-- 147 (218)
T ss_dssp HHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC-----------------C--
T ss_pred hHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchh-----------------h--
Confidence 5889999999999874 567999999999999999888763 3678888888642100 0
Q ss_pred CCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh
Q 004149 676 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 755 (771)
....+.+|+|++||++|.++|++++.++++++. .+.+++++|+++|.|.. ..
T Consensus 148 -----------------------~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~---~~~~l~~i~ga~H~f~~--~~ 199 (218)
T d2fuka1 148 -----------------------SDVQPPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFFHR--KL 199 (218)
T ss_dssp -----------------------TTCCCCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTCTT--CH
T ss_pred -----------------------hccccccceeeEecCCCcCcCHHHHHHHHHHcc---CCceEEEeCCCCCCCCC--CH
Confidence 001345799999999999999999888766554 35789999999998763 33
Q ss_pred HHHHHHHHHHHHHHhC
Q 004149 756 FESFLNIGLWFKKYCK 771 (771)
Q Consensus 756 ~~~~~~i~~wl~~~l~ 771 (771)
.+....+.+|++++|.
T Consensus 200 ~~l~~~~~~~v~~~l~ 215 (218)
T d2fuka1 200 IDLRGALQHGVRRWLP 215 (218)
T ss_dssp HHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4677889999999873
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.85 E-value=2.7e-21 Score=197.17 Aligned_cols=222 Identities=11% Similarity=0.117 Sum_probs=147.1
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...||..+++|.+.|++. ..++.++||++||.+.. ...|...+..|+++||.|+++|+||.+| .+... ......
T Consensus 10 ~~~dg~~l~~w~~~p~~~-~~~~~~~Vvi~HG~~~~--~~~~~~~a~~L~~~G~~Vi~~D~rGh~G--~S~g~-~~~~~~ 83 (302)
T d1thta_ 10 RVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHVG--LSSGS-IDEFTM 83 (302)
T ss_dssp EETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC-----------CCCH
T ss_pred EcCCCCEEEEEEecCcCC-CCCCCCEEEEeCCCcch--HHHHHHHHHHHHHCCCEEEEecCCCCCC--CCCCc-ccCCCH
Confidence 456789999999999864 33567899999997655 3468889999999999999999999532 22211 111112
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC---CCCcchhhhh
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVES 670 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~---~~~~~~~~~~ 670 (771)
....+|+.++++++..++ .++++|+||||||.+++.+|.. ..++++|+.+|+.+........ ..+... ...
T Consensus 84 ~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 157 (302)
T d1thta_ 84 TTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDYLSLP-IDE 157 (302)
T ss_dssp HHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCGGGSC-GGG
T ss_pred HHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhccchhh-hhh
Confidence 234788999999998763 5789999999999999888764 4588999999988764321100 000000 000
Q ss_pred ccCCCCCcCCCCCC-hhh-HHHHh--h----cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 671 YGSKGKDSFTESPS-VED-LTRFH--S----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 671 ~~~~~~~~~~~~~~-~~~-~~~~~--~----~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
... .. ....... ... ..... . .++...+.++++|+|++||++|.+||++.++++++.++. .+++++++
T Consensus 158 ~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~s--~~~kl~~~ 233 (302)
T d1thta_ 158 LPN-DL-DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLYSL 233 (302)
T ss_dssp CCS-EE-EETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT--CCEEEEEE
T ss_pred ccc-cc-cccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCCC--CCceEEEe
Confidence 000 00 0000000 000 00000 0 123456789999999999999999999999999887753 35899999
Q ss_pred CCCCccCCC
Q 004149 743 PNDVHGIER 751 (771)
Q Consensus 743 ~~~~H~~~~ 751 (771)
++++|.+..
T Consensus 234 ~g~~H~l~e 242 (302)
T d1thta_ 234 LGSSHDLGE 242 (302)
T ss_dssp TTCCSCTTS
T ss_pred cCCCccccc
Confidence 999998863
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.84 E-value=6.7e-20 Score=200.22 Aligned_cols=341 Identities=12% Similarity=0.019 Sum_probs=203.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
....||||++|+|..+...+-+......+|++++.+ ++..+++..+ ..+..++|||||++|||+++..
T Consensus 66 ~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~--~~~~~l~~~~-----~~~~~~~~SPDG~~ia~~~~~~----- 133 (470)
T d2bgra1 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERIP-----NNTQWVTWSPVGHKLAYVWNND----- 133 (470)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC-----TTEEEEEECSSTTCEEEEETTE-----
T ss_pred eeEECCCCCEEEEEECCcceeeeccCceEEEEECCC--CcccccccCC-----ccccccccccCcceeeEeeccc-----
Confidence 445688999999988755444455677889988743 3555565554 6688999999999999997654
Q ss_pred EEEEe-cCCcceEEEecCCc------ccccccC---CCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004149 126 QFELW-SQSQLEKEFHVPQT------VHGSVYA---DGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~------~~g~~~~---~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
++.++ .++...+++..... ..+.+|. .+....+.|||||++|||...+......................
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCee
Confidence 77777 56666665532111 1111111 12235688999999999987654422110000000000000000
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC----------CCCCCccceEEEecCCCCCccEEEEEeecC
Q 004149 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----------IPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~----------~~~~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
....+ +..|. ......++++++.++....+.. ...+..+..+.|+++++. +++...+.
T Consensus 214 ----~~~~~-~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~r~ 281 (470)
T d2bgra1 214 ----VRVPY-PKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI----SLQWLRRI 281 (470)
T ss_dssp ----EEEEC-CBTTS---CCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE----EEEEEESS
T ss_pred ----eeecc-ccccc---cCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCce----eEEEeecc
Confidence 00000 01111 1133578999998886544410 112234457899999986 66555433
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC------------CCccccceeecCCCCEE-E
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE------------SISSAFFPRFSPDGKFL-V 332 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~------------~~~~~~~p~~SpDG~~l-~ 332 (771)
.... ...++.+|. .++....+.. .......|.|+++++.. +
T Consensus 282 ~~~~---------~~~~~~~d~-----------------~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (470)
T d2bgra1 282 QNYS---------VMDICDYDE-----------------SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (470)
T ss_dssp TTEE---------EEEEEEEET-----------------TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCce---------EEEEEEecC-----------------CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEE
Confidence 3211 114555554 4444433321 11123578999988765 4
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC--
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-- 410 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~-- 410 (771)
+.+.++ | ..+||+++..++..++++.+...+.. .++.|++.|+|++...
T Consensus 336 ~~s~~d----g----~~~ly~~~~~g~~~~~lt~g~~~v~~---------------------~~~~d~~~iyf~a~~~~~ 386 (470)
T d2bgra1 336 IISNEE----G----YRHICYFQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEYKG 386 (470)
T ss_dssp EEECTT----S----CEEEEEEETTCSCCEESCCSSSCEEE---------------------EEEECSSEEEEEESCGGG
T ss_pred EEeccC----c----CceeEEEeccCCceeeeccCCeeEEE---------------------EEEECCCEEEEEEecCCC
Confidence 555443 2 56899999988888888766544322 2456778898887633
Q ss_pred --CeeEEEEEECCCC-cEEEecCC----CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 411 --SSQVIISVNVSSG-ELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 411 --~~~~l~~~d~~tg-~~~~l~~~----~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
...+||+++++++ +.++|+.. ...+....|||||++++..+++++.|+.. +.+..
T Consensus 387 ~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~-l~~~~ 448 (470)
T d2bgra1 387 MPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYT-LHSSV 448 (470)
T ss_dssp CTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEE-EEETT
T ss_pred CcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEE-EEECC
Confidence 3558999999864 56777642 22455678999999999999999999854 44433
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.84 E-value=2.1e-20 Score=192.62 Aligned_cols=243 Identities=19% Similarity=0.164 Sum_probs=149.7
Q ss_pred ccCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 514 TKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
...+| ..+.+++|+|++ ..++.|+||++|||++..... .+...+..++ +.||.|+.+|||.++++
T Consensus 56 ~~~~g~~~i~~~~~~P~~--~~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~pe~---------- 123 (317)
T d1lzla_ 56 PGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPET---------- 123 (317)
T ss_dssp CCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTS----------
T ss_pred ecCCCCceEEEEEECCCC--CCCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccccc----------
Confidence 34445 368999999985 456789999999998765433 4445566665 56999999999986553
Q ss_pred CccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccch----hhhhcC
Q 004149 591 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNL----ALMVGT 659 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~----~~~~~~ 659 (771)
.....++|+.+++.|+.++ ..+|++||+|+|+|+||++++.++.+.++ .....++..+..+. ..+...
T Consensus 124 -~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 202 (317)
T d1lzla_ 124 -TFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNF 202 (317)
T ss_dssp -CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTTCCSHHHHHC
T ss_pred -cccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccccccccccccccc
Confidence 2234578899999888764 34789999999999999999988865321 12233333332211 111111
Q ss_pred CCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCcccccc-CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 660 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS-KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.+...+.............................+|..... ...+|+||++|+.|..+ .+++.|+++|++.|++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l~--~~~~~~~~~L~~~G~~v~ 280 (317)
T d1lzla_ 203 VDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPLR--DEGIEYALRLLQAGVSVE 280 (317)
T ss_dssp SSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTTH--HHHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCCH--HHHHHHHHHHHHCCCCEE
Confidence 111100000000000000000000000001111112222211 22479999999999654 789999999999999999
Q ss_pred EEEeCCCCccCCCC---CChHHHHHHHHHHHHHHhC
Q 004149 739 VIVFPNDVHGIERP---QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 739 ~~~~~~~~H~~~~~---~~~~~~~~~i~~wl~~~l~ 771 (771)
+++|++++|++... ....+...++++||+++||
T Consensus 281 ~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 281 LHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp EEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 99999999987532 2234567889999999987
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.84 E-value=2.9e-20 Score=181.96 Aligned_cols=206 Identities=17% Similarity=0.146 Sum_probs=146.6
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh------
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL------ 585 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~------ 585 (771)
.+...||..+++++..|. ++++|+||++|++.+. .......++.|+++||.|++||+.+.++.+....
T Consensus 7 ~~~~~dg~~~~a~~~~P~----~~~~P~vl~~h~~~G~--~~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~~~~~~ 80 (233)
T d1dina_ 7 SIQSYDGHTFGALVGSPA----KAPAPVIVIAQEIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQ 80 (233)
T ss_dssp CEECTTSCEECEEEECCS----SSSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTSHHH
T ss_pred EEEcCCCCEEEEEEECCC----CCCceEEEEeCCCCCC--CHHHHHHHHHHHhcCCcceeeeeccCCCcCcccChHHHHH
Confidence 456678899999999996 3579999999975543 2344566889999999999999865443322110
Q ss_pred -h----cCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC
Q 004149 586 -Q----SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 660 (771)
Q Consensus 586 -~----~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 660 (771)
. ............|+.++++++.+.+ .+.+||+++|+|+||.+++.++.. +. +.++++..+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~-~~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~~-------- 149 (233)
T d1dina_ 81 REQAYKLWQAFDMEAGVGDLEAAIRYARHQP-YSNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVGL-------- 149 (233)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTST-TEEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSCG--------
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCC-CCCCceEEEEecccccceeecccc-cc-cceecccccccc--------
Confidence 0 0000111223578888999998776 456899999999999999998876 33 445554333110
Q ss_pred CCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004149 661 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
.++...+.++++|+|++||++|+.+|+++.+.+.+.++ .+.++++.
T Consensus 150 ---------------------------------~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~~~~~~~~ 195 (233)
T d1dina_ 150 ---------------------------------EKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFG-ANPLLQVH 195 (233)
T ss_dssp ---------------------------------GGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHT-TCTTEEEE
T ss_pred ---------------------------------ccchhhhhccCCcceeeecccccCCCHHHHHHHHHHHh-cCCCEEEE
Confidence 01223455788999999999999999998888877665 57889999
Q ss_pred EeCCCCccCCCCC-------ChHHHHHHHHHHHHH
Q 004149 741 VFPNDVHGIERPQ-------SDFESFLNIGLWFKK 768 (771)
Q Consensus 741 ~~~~~~H~~~~~~-------~~~~~~~~i~~wl~~ 768 (771)
+|||++|+|..+. ...+.++++++||.+
T Consensus 196 ~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 196 WYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 9999999986422 124568899999965
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=1.3e-20 Score=185.62 Aligned_cols=207 Identities=15% Similarity=0.046 Sum_probs=136.6
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH----HHHHHHHHc
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL----TAIDHVIDM 610 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~----~~i~~l~~~ 610 (771)
++.|+||++||.+.+ ...+...+..|+++||.|++||+||.+.+..................++. ++...+...
T Consensus 22 ~~~~~vl~lHG~~~~--~~~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
T d1ufoa_ 22 APKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEA 99 (238)
T ss_dssp SCCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhc
Confidence 356999999997655 34566677788999999999999995543222111111111111111222 222223333
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHH
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 690 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (771)
+.++.++++++|+|+||++++.++.++|+...++.+..+.. ..... .. ..........
T Consensus 100 ~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~~~~~~~~~-~~~~~-----------~~----------~~~~~~~~~~ 157 (238)
T d1ufoa_ 100 ERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGF-PMKLP-----------QG----------QVVEDPGVLA 157 (238)
T ss_dssp HHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSS-CCCCC-----------TT----------CCCCCHHHHH
T ss_pred cccCCceEEEEEecccHHHHHHHHhcCcchhheeeeeeecc-ccccc-----------cc----------cccccccccc
Confidence 34577899999999999999999999886554444333221 11000 00 0011223334
Q ss_pred HhhcCcccccc-CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC--CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 691 FHSKSPISHIS-KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 691 ~~~~sp~~~~~-~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
....++..... ..++|+|++||++|..+|++++.+++++|++.+. +++++.++|++|.+. .+.++.+.+||.
T Consensus 158 ~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g~gH~~~-----~~~~~~~~~f~~ 232 (238)
T d1ufoa_ 158 LYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-----PLMARVGLAFLE 232 (238)
T ss_dssp HHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECCCCCccC-----HHHHHHHHHHHH
Confidence 45556665544 3568999999999999999999999999998876 478899999999875 356788999999
Q ss_pred HHh
Q 004149 768 KYC 770 (771)
Q Consensus 768 ~~l 770 (771)
+||
T Consensus 233 ~~l 235 (238)
T d1ufoa_ 233 HWL 235 (238)
T ss_dssp HHH
T ss_pred HHh
Confidence 987
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.82 E-value=1.7e-19 Score=191.44 Aligned_cols=208 Identities=14% Similarity=0.089 Sum_probs=147.6
Q ss_pred HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC--------------CCCCeEEEEE
Q 004149 557 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL--------------ANPSKVTVVG 622 (771)
Q Consensus 557 ~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--------------~d~~ri~l~G 622 (771)
...++|+++||+|+.+|.||.++++..+ ...+..+.+|..++|+|+..+.. ....||+++|
T Consensus 127 ~~~~~~~~~GYavv~~D~RG~g~S~G~~-----~~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G 201 (405)
T d1lnsa3 127 SLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTG 201 (405)
T ss_dssp HHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEE
T ss_pred cchHHHHhCCCEEEEECCCCCCCCCCcc-----ccCChhhhhhHHHHHHHHHhcccccccccccccccccccCCeeEEEe
Confidence 4567899999999999999988776643 23445678899999999976432 2236899999
Q ss_pred cChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCc-----ch--hh---hhccCCCC----------------
Q 004149 623 GSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-----WC--YV---ESYGSKGK---------------- 676 (771)
Q Consensus 623 ~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-----~~--~~---~~~~~~~~---------------- 676 (771)
+|+||++++.+|...|+.++|+|..+++.++........... +. .. ........
T Consensus 202 ~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (405)
T d1lnsa3 202 KSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRL 281 (405)
T ss_dssp ETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhccccccccccchhhhchhhhhhcc
Confidence 999999999999998999999999999998754332111100 00 00 00000000
Q ss_pred ---CcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004149 677 ---DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 677 ---~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
............+.+.+.++..++++|++|+|+++|..|..+++.++.++++++++ +.+.++++.|. +|......
T Consensus 282 ~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~~~~~y~al~~-~~~~~Lilgpw-~H~~~~~~ 359 (405)
T d1lnsa3 282 AEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GHAKHAFLHRG-AHIYMNSW 359 (405)
T ss_dssp HHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TCCEEEEEESC-SSCCCTTB
T ss_pred chhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHHHHHHHHHHHh-CCCcEEEEeCC-CCCCCccc
Confidence 00000000111234667788889999999999999999999999999999999864 66788888875 78765443
Q ss_pred ChHHHHHHHHHHHHHHhC
Q 004149 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~wl~~~l~ 771 (771)
...++.+.+++||++|||
T Consensus 360 ~~~d~~~~~~~wFD~~Lk 377 (405)
T d1lnsa3 360 QSIDFSETINAYFVAKLL 377 (405)
T ss_dssp SSCCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhC
Confidence 344677889999999997
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.82 E-value=4.3e-20 Score=182.80 Aligned_cols=190 Identities=16% Similarity=0.211 Sum_probs=144.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+++...+. +|.|++ ++.|+|||+|||++.... ..+...+..|+++||+|+++|||.+++. ..
T Consensus 46 ~~~~~~lD--iy~P~~----~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~-----------~~ 108 (261)
T d2pbla1 46 EGDRHKFD--LFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEV-----------RI 108 (261)
T ss_dssp SSTTCEEE--EECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTS-----------CH
T ss_pred CCcCeEEE--EeccCC----CCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccc-----------cC
Confidence 33444454 788863 467999999999875433 3566678899999999999999986543 22
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC------CceeEEEecCCccchhhhhcCCCCCcchh
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDWCY 667 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p------~~~~a~v~~~p~~~~~~~~~~~~~~~~~~ 667 (771)
...++|+.++++|+.++. ++||+|+|||+||+++++++.... ..+++++..+|+.++..+.... .
T Consensus 109 p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 179 (261)
T d2pbla1 109 SEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------M 179 (261)
T ss_dssp HHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------T
T ss_pred chhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhh------h
Confidence 345899999999999884 589999999999999988775432 3578889999987765432110 0
Q ss_pred hhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004149 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
...+. ...+.....||+.++.+..+|+||+||++|..++..++++++++++ ++.+.+++.+|
T Consensus 180 ~~~~~-------------~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~-----~~~~~~~~~~H 241 (261)
T d2pbla1 180 NEKFK-------------MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHH 241 (261)
T ss_dssp HHHHC-------------CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCT
T ss_pred ccccc-------------CCHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhC-----CCceEeCCCCc
Confidence 01111 1235567789999999999999999999999999999999999885 57788999999
Q ss_pred c
Q 004149 748 G 748 (771)
Q Consensus 748 ~ 748 (771)
.
T Consensus 242 F 242 (261)
T d2pbla1 242 F 242 (261)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.82 E-value=1.8e-20 Score=195.72 Aligned_cols=241 Identities=17% Similarity=0.131 Sum_probs=157.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~ 588 (771)
++...+|.+|.+.+|.|++ ..++.|+||++|||++..... .+...+..++++||.|+++|||.+++..
T Consensus 83 ~i~~~dg~~i~~~iy~P~~--~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~------- 153 (358)
T d1jkma_ 83 TILGVDGNEITLHVFRPAG--VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAE------- 153 (358)
T ss_dssp EEECTTSCEEEEEEEEETT--CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETT-------
T ss_pred EEeCCCCCEEEEEEEecCC--CCCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccccccc-------
Confidence 4445678999999999985 456789999999998765432 2345778889999999999999863321
Q ss_pred CCCccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHHh-----CCCceeEEEecCCccchhhhhcCCCC
Q 004149 589 PGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNLALMVGTTDI 662 (771)
Q Consensus 589 ~~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~-----~p~~~~a~v~~~p~~~~~~~~~~~~~ 662 (771)
+.......++|+.++++|+.++. .+|.+||+|+|.|.||++++.++.. ....+.+.++..|+.+.....
T Consensus 154 pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~----- 228 (358)
T d1jkma_ 154 GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAW----- 228 (358)
T ss_dssp EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTS-----
T ss_pred ccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceeccccCc-----
Confidence 11223456999999999998752 3578999999999999999877653 134578888888876532110
Q ss_pred CcchhhhhccCCCCCcCCCCCChhhHHH----H-----hhcCcccc-------ccCCCCcEEEEeeCCCCccCcHHHHHH
Q 004149 663 PDWCYVESYGSKGKDSFTESPSVEDLTR----F-----HSKSPISH-------ISKVKTPTIFLLGAQDLRVPVSNGLQY 726 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~sp~~~-------~~~i~~P~Lii~G~~D~~vp~~~~~~~ 726 (771)
..+........ ................ + ...+|... ..+--+|+||++|+.|.++ ++++.|
T Consensus 229 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~--~e~~~~ 305 (358)
T d1jkma_ 229 DHERRLTELPS-LVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLR--DEGIAF 305 (358)
T ss_dssp CHHHHHHHCTH-HHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTH--HHHHHH
T ss_pred cchhhcccccc-hhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCCH--HHHHHH
Confidence 00000000000 0000000000000000 0 00111110 0112369999999999776 789999
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCC------CCChHHHHHHHHHHHHHH
Q 004149 727 ARALREKGVETKVIVFPNDVHGIER------PQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~------~~~~~~~~~~i~~wl~~~ 769 (771)
+++|+++|+++++++|++++|++.. ++...+..+.|..|+..+
T Consensus 306 ~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 306 ARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998631 233445677888888765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.1e-18 Score=172.81 Aligned_cols=242 Identities=17% Similarity=0.159 Sum_probs=180.8
Q ss_pred CeEEEEecCCCCC--CeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC
Q 004149 111 SKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 187 (771)
++|||+++..++. .+||+++ ++++.++++...... ..++|||||++|||++...
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~sP~wSPDGk~IAf~~~~~------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 60 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT-------------
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCce----------eeeEECCCCCEEEEEEeec-------------
Confidence 7899999876322 3688888 777888888765554 4899999999999987543
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004149 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
....+++++..++..+.+ +........+.|||||+. |++.....+
T Consensus 61 ----------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~----i~~~~~~~~- 105 (269)
T d2hqsa1 61 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKTG- 105 (269)
T ss_dssp ----------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECTTS-
T ss_pred ----------------------------cCcceeeeecccCceeEE--eeeecccccceecCCCCe----eeEeeecCC-
Confidence 336789999999998888 566666778999999999 999874332
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
...++.... .................|.++++++.+++.+... |
T Consensus 106 -----------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g---- 149 (269)
T d2hqsa1 106 -----------SLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----G---- 149 (269)
T ss_dssp -----------SCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----S----
T ss_pred -----------ccceeeccc-----------------ccccceeeeeccccccccccccccccceeccccc----C----
Confidence 224555554 4445555666666677899999999999998764 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
..+|++.++.++...+++.... ....+.|||||+.+++.....+...++.++..++..+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (269)
T d2hqsa1 150 RPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 209 (269)
T ss_dssp SCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred CceEeeeecccccceeeecccc--------------------cccccccccccceeEEEeecCCceeeeEeecccccceE
Confidence 4579999988876544432221 12356799999999999988888999999998887655
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 428 l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+. .......+.|||||++|+|+... .....||+.++..+
T Consensus 210 ~~-~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 210 LS-STFLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGR 248 (269)
T ss_dssp CC-CSSSCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSC
T ss_pred ee-cCccccceEECCCCCEEEEEEcC-CCCcEEEEEECCCC
Confidence 54 44445678999999999998754 45567888887644
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.82 E-value=4.4e-19 Score=169.57 Aligned_cols=192 Identities=11% Similarity=0.110 Sum_probs=141.1
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc-c----ccchhh
Q 004149 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV-G----SQDVND 599 (771)
Q Consensus 525 ~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~-~----~~~~~D 599 (771)
+|.|. .++++|+||++||.+.+ ...+...+..++ .++.|++|+.+.....+..+........ . ....++
T Consensus 5 i~~~~---~~~~~P~vi~lHG~g~~--~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (202)
T d2h1ia1 5 VFQKG---KDTSKPVLLLLHGTGGN--ELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKE 78 (202)
T ss_dssp EEECC---SCTTSCEEEEECCTTCC--TTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHH
T ss_pred cCCCC---CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHH
Confidence 56675 45678999999997654 345666777665 5899999876432221111111111000 0 112445
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcC
Q 004149 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 679 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (771)
+...++++.++..+|++||+++|+|+||.+++.++..+|+.++++++.+|.....
T Consensus 79 ~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~------------------------- 133 (202)
T d2h1ia1 79 LNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR------------------------- 133 (202)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS-------------------------
T ss_pred HHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc-------------------------
Confidence 6677777777778999999999999999999999999999999999888764210
Q ss_pred CCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHH
Q 004149 680 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 759 (771)
Q Consensus 680 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 759 (771)
+........+|++++||++|++||+++++++++.|++.|.+++++.||+ +|.+. .+.+
T Consensus 134 ----------------~~~~~~~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~~ 191 (202)
T d2h1ia1 134 ----------------GMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGEV 191 (202)
T ss_dssp ----------------SCCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHHH
T ss_pred ----------------cccccccccchhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHH
Confidence 0111223457999999999999999999999999999999999999986 89875 4678
Q ss_pred HHHHHHHHHH
Q 004149 760 LNIGLWFKKY 769 (771)
Q Consensus 760 ~~i~~wl~~~ 769 (771)
+.+.+||++.
T Consensus 192 ~~~~~wl~k~ 201 (202)
T d2h1ia1 192 EKAKEWYDKA 201 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8999999874
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=6.2e-20 Score=175.81 Aligned_cols=192 Identities=16% Similarity=0.214 Sum_probs=133.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH--HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
-+|..+++....|. .....|+||++||.+.+ ...|.. .+..|+++||.|+++|+|| +|.+..........
T Consensus 13 v~G~~i~y~~~~~~---~~~~~~~vvllHG~~~~--~~~w~~~~~~~~la~~gy~via~D~~G---~G~S~~~~~~~~~~ 84 (208)
T d1imja_ 13 VQGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPIG 84 (208)
T ss_dssp ETTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCTT
T ss_pred ECCEEEEEEEecCC---CCCCCCeEEEECCCCCC--hhHHhhhHHHHHHHHcCCeEEEeeccc---ccCCCCCCcccccc
Confidence 36788888777775 44567889999997755 234544 4678999999999999999 66654322222222
Q ss_pred ccc-hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004149 594 SQD-VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 594 ~~~-~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
... .+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|+.+|...- .+
T Consensus 85 ~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~----------------~~- 141 (208)
T d1imja_ 85 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTD----------------KI- 141 (208)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGG----------------GS-
T ss_pred hhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccccc----------------cc-
Confidence 222 23333433332 3578899999999999999999999999999998885310 00
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....+.++++|+|+++|++|.++|.+. +. + +.-...++.++++++|... .
T Consensus 142 -----------------------~~~~~~~i~~P~Lii~G~~D~~~~~~~--~~---~-~~~~~~~~~~i~~~gH~~~-~ 191 (208)
T d1imja_ 142 -----------------------NAANYASVKTPALIVYGDQDPMGQTSF--EH---L-KQLPNHRVLIMKGAGHPCY-L 191 (208)
T ss_dssp -----------------------CHHHHHTCCSCEEEEEETTCHHHHHHH--HH---H-TTSSSEEEEEETTCCTTHH-H
T ss_pred -----------------------ccccccccccccccccCCcCcCCcHHH--HH---H-HhCCCCeEEEECCCCCchh-h
Confidence 012245688999999999999886432 22 2 2234589999999999754 3
Q ss_pred CChHHHHHHHHHHHHH
Q 004149 753 QSDFESFLNIGLWFKK 768 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~ 768 (771)
+...++.+.+.+||++
T Consensus 192 ~~p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 192 DKPEEWHTGLLDFLQG 207 (208)
T ss_dssp HCHHHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHhc
Confidence 4456788999999974
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=1.9e-20 Score=191.80 Aligned_cols=224 Identities=18% Similarity=0.183 Sum_probs=150.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+.++.+.+|.|+. +.|+||++|||++..... .+...+..+ ++.||.|+.+|||.++++ ....
T Consensus 65 ~g~i~~~iy~P~~-----~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~-----------~~p~ 128 (311)
T d1jjia_ 65 NGDIRVRVYQQKP-----DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH-----------KFPA 128 (311)
T ss_dssp TEEEEEEEEESSS-----SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTS-----------CTTH
T ss_pred CCcEEEEEEcCCC-----CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEecccccccc-----------ccch
Confidence 3378899999962 459999999998765433 444555555 456999999999997654 2334
Q ss_pred chhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC----CCceeEEEecCCccchhhhh----cCCC-CC
Q 004149 596 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMV----GTTD-IP 663 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~~~~~~~~----~~~~-~~ 663 (771)
.++|+.++++|+.++ ..+|++||+|+|+|+||++++.++... .....+.++.+|+++..... .... ..
T Consensus 129 ~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~ 208 (311)
T d1jjia_ 129 AVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLW 208 (311)
T ss_dssp HHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCHHHHHTSSSCS
T ss_pred hhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeeccCcccccccccccc
Confidence 588999999999875 347899999999999999988776532 34578888999987643110 0000 00
Q ss_pred cc-h-hhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 664 DW-C-YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 664 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.+ . ....... .+ .. ..........+|+....+..+|+||++|+.|.++ .++.+|+++|+++|+++++++
T Consensus 209 ~~~~~~~~~~~~----~~--~~-~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l~--d~~~~~~~~L~~~Gv~v~~~~ 279 (311)
T d1jjia_ 209 ILDQKIMSWFSE----QY--FS-REEDKFNPLASVIFADLENLPPALIITAEYDPLR--DEGEVFGQMLRRAGVEASIVR 279 (311)
T ss_dssp SCCHHHHHHHHH----HH--CS-SGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTTH--HHHHHHHHHHHHTTCCEEEEE
T ss_pred cccHHHhhhhhh----hc--cc-ccccccccccchhhcccccCCCEEEEEcCCCCCh--HHHHHHHHHHHHCCCCEEEEE
Confidence 00 0 0000000 00 00 0000111234666555555689999999999776 688999999999999999999
Q ss_pred eCCCCccCCC--C--CChHHHHHHHHHHH
Q 004149 742 FPNDVHGIER--P--QSDFESFLNIGLWF 766 (771)
Q Consensus 742 ~~~~~H~~~~--~--~~~~~~~~~i~~wl 766 (771)
|++++|+|.. + +...++++++.+||
T Consensus 280 ~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 280 YRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp EEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred ECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 9999998653 1 22346677777776
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.80 E-value=1.6e-19 Score=185.20 Aligned_cols=233 Identities=18% Similarity=0.157 Sum_probs=153.2
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCC-cEEEEECCCCCCCCChhhhhcCCCC
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVG-YSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G-~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
...+|.++.+.+|+|++ ..++.|+||++|||++.... ..+...+..++.+| +.|+.+|||..++.
T Consensus 51 ~~~~g~~i~~~~y~P~~--~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~----------- 117 (308)
T d1u4na_ 51 MDLPGRTLKVRMYRPEG--VEPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH----------- 117 (308)
T ss_dssp EEETTEEEEEEEEECTT--CCSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS-----------
T ss_pred EecCCceEEEEEEeccc--cCCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc-----------
Confidence 34578889999999985 34578999999999865433 34555666666555 67889999986543
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhCC----CceeEEEecCCccchhhhhcCCCCCc
Q 004149 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNPLCNLALMVGTTDIPD 664 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~p~~~~~~~~~~~~~~~ 664 (771)
......+|+..+++|+.++. .+|++||+++|+|+||++++.++.... ..+.+..+.++..+...... .
T Consensus 118 ~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 192 (308)
T d1u4na_ 118 KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHP-----P 192 (308)
T ss_dssp CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTTSC-----C
T ss_pred ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccccccccc-----c
Confidence 33345889999999998753 478999999999999999998876532 23455555666543211100 0
Q ss_pred chhhhhccCCCC----------CcCCCCCChhhHHHHhhcCccccccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 665 WCYVESYGSKGK----------DSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 665 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
. .......... ..+. .. .........++........ +|+||++|+.|.++ .+++.|+++|+++
T Consensus 193 ~-~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~~~~~L~~~ 266 (308)
T d1u4na_ 193 A-SIEENAEGYLLTGGMSLWFLDQYL--NS-LEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLYAEALNKA 266 (308)
T ss_dssp H-HHHHTSSSSSSCHHHHHHHHHHHC--SS-GGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHHHHHHHHT
T ss_pred c-hhhhccccccccchhhhhhhhccc--Cc-cccccchhhhhhhchhhcCCCCeeEEecCcCCch--HHHHHHHHHHHHC
Confidence 0 0000000000 0000 00 0001111222322222222 58999999999776 6889999999999
Q ss_pred CCCEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHHh
Q 004149 734 GVETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l 770 (771)
|+++++++|++++|++... ....+.++.+.+||++.|
T Consensus 267 G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 267 GVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp TCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999986531 223478889999999886
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=1.2e-18 Score=175.80 Aligned_cols=261 Identities=9% Similarity=0.021 Sum_probs=173.2
Q ss_pred CCC--cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC--CCe
Q 004149 50 NGN--GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--SPI 125 (771)
Q Consensus 50 s~d--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--~~~ 125 (771)
||| |++|+|+.. .+||++++ .++++++||..+ +.+..|+|||||++|||++...+. ..+
T Consensus 7 sPdi~G~~v~f~~~----------~dl~~~d~--~~g~~~~Lt~~~-----~~~~~p~~SPDG~~iaf~~~~~~~~~~~~ 69 (281)
T d1k32a2 7 NPDIHGDRIIFVCC----------DDLWEHDL--KSGSTRKIVSNL-----GVINNARFFPDGRKIAIRVMRGSSLNTAD 69 (281)
T ss_dssp EEEEETTEEEEEET----------TEEEEEET--TTCCEEEEECSS-----SEEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred CCCCCCCEEEEEeC----------CcEEEEEC--CCCCEEEEecCC-----CcccCEEECCCCCEEEEEEeeCCCCCceE
Confidence 467 999999853 37999776 455788998876 668899999999999999876532 246
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+|.+. .+++.++++.......+.. .....+.|||||+.|+|.......
T Consensus 70 i~~~~~~~g~~~~lt~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~---------------------------- 118 (281)
T d1k32a2 70 LYFYNGENGEIKRITYFSGKSTGRR---MFTDVAGFDPDGNLIISTDAMQPF---------------------------- 118 (281)
T ss_dssp EEEEETTTTEEEECCCCCEEEETTE---ECSEEEEECTTCCEEEEECTTSSS----------------------------
T ss_pred EEEEEecCCceEEeeecCCCccCcc---ccccccccCCCCCEEEEEEccCCC----------------------------
Confidence 88888 6777777765432211000 011477899999999997543211
Q ss_pred cCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 205 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
.....++.++.+++..+.. ... .....|++|++. +++............ .. .......
T Consensus 119 ----------~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~-~~~~~~~ 176 (281)
T d1k32a2 119 ----------SSMTCLYRVENDGINFVPL--NLG---PATHILFADGRR----VIGRNTFELPHWKGY--RG-GTRGKIW 176 (281)
T ss_dssp ----------TTCCEEEEEEGGGTEEEEC--CSC---SCSEEEEETTEE----EEEESCSCCTTSTTC--CS-TTCCEEE
T ss_pred ----------ccceeeeeecCCCceeEEe--cCC---ccceeeecCCCe----EEEeeccccceeeee--cc-CCcceee
Confidence 1235678889888887776 222 234678889888 777664333211111 01 1112222
Q ss_pred EecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC
Q 004149 285 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
... .......++........|.++++ .+++..... +..+||++|+++++.+++
T Consensus 177 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~l~~~d~~g~~~~~l 229 (281)
T d1k32a2 177 IEV-----------------NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDID--------GFGQIYSTDLDGKDLRKH 229 (281)
T ss_dssp EEE-----------------ETTEEEEEECCSSCCEEEEEETT--EEEEEECTT--------SSCEEEEEETTSCSCEEC
T ss_pred eec-----------------cccceeeccCCccccceeeeecc--ccceecccc--------cccceEEEeCCCCceEEe
Confidence 222 33455556666666778888876 466766553 256899999999888777
Q ss_pred ccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004149 365 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
+.... .....|||||++|+|... ..||.+|+++|+.++|+...
T Consensus 230 t~~~~---------------------~~~~~~SpDG~~I~f~~~----~~l~~~d~~~g~~~~i~~~~ 272 (281)
T d1k32a2 230 TSFTD---------------------YYPRHLNTDGRRILFSKG----GSIYIFNPDTEKIEKIEIGD 272 (281)
T ss_dssp CCCCS---------------------SCEEEEEESSSCEEEEET----TEEEEECTTTCCEEECCCCC
T ss_pred ecCCC---------------------cccccCcCCCCEEEEEeC----CEEEEEECCCCCEEEeccCC
Confidence 54321 122369999999999753 36999999999999997654
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.5e-19 Score=179.19 Aligned_cols=198 Identities=12% Similarity=0.125 Sum_probs=131.1
Q ss_pred CCCCCcEEEEEcCCCCCCCC---CcchHHH----HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHH
Q 004149 533 DCSCDPLIVVLHGGPHSVSL---SSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 605 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~---~~~~~~~----~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~ 605 (771)
..+++|+||++|||++.... ..+...+ ..++++||.|+++|||.+++. .....++|+.++++
T Consensus 27 ~~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~-----------~~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 27 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 95 (263)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch-----------hhhHHHHhhhhhhh
Confidence 45677999999998764322 2333333 444688999999999986653 12345899999999
Q ss_pred HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-----------------ceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 606 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----------------KFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 606 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----------------~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
|+.++. +.++|+|+|+|+||.+++.++...++ .+.+.+...+..++..+........+...
T Consensus 96 ~l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred cccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 999874 67899999999999999998875432 34555555565554433221111111111
Q ss_pred hhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
..+.. ....... .. ..........+.++.+|+|++||++|++||++++.+|+++|++.|++++++++++++|.
T Consensus 174 ~~~~~-~~~~~~~----~~--~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~ 246 (263)
T d1vkha_ 174 LAFPD-GIQMYEE----EP--SRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 246 (263)
T ss_dssp HHCTT-CGGGCCC----CH--HHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGG
T ss_pred ccccc-ccccccc----cc--cccCccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCch
Confidence 11111 0000000 00 00000112234566799999999999999999999999999999999999999999997
Q ss_pred CC
Q 004149 749 IE 750 (771)
Q Consensus 749 ~~ 750 (771)
..
T Consensus 247 ~~ 248 (263)
T d1vkha_ 247 DV 248 (263)
T ss_dssp GG
T ss_pred hh
Confidence 53
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.80 E-value=3.9e-18 Score=173.45 Aligned_cols=232 Identities=15% Similarity=0.159 Sum_probs=141.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+|..+++..+-+ ...|+||++||.+.+ ...|. ..+..|+++||.|+++|+||. |.+.... ......
T Consensus 8 g~~~i~y~~~G~------~~~p~vvl~HG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G~---G~S~~~~--~~~~~~ 74 (297)
T d1q0ra_ 8 GDVELWSDDFGD------PADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRDT---GRSTTRD--FAAHPY 74 (297)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTTS---TTSCCCC--TTTSCC
T ss_pred CCEEEEEEEecC------CCCCEEEEECCCCcC--hhHHHHHHHHHHHhCCCEEEEEeCCCC---ccccccc--cccccc
Confidence 456677666533 245889999998665 33554 457788899999999999994 4432111 111123
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh--------hcC---CCCC-
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--------VGT---TDIP- 663 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~--------~~~---~~~~- 663 (771)
.++|+.+.+..+.+. ++.+++.++|||+||.+++.+|.++|++++++|+.++....... ... ...+
T Consensus 75 ~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
T d1q0ra_ 75 GFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLPG 152 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSCC
T ss_pred ccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhhhhhh
Confidence 466666655555555 34578999999999999999999999999999988775422100 000 0000
Q ss_pred -cchhhhhc---cCCCC---------------CcCCCCC-ChhhHHHH-----------------------hhcCccccc
Q 004149 664 -DWCYVESY---GSKGK---------------DSFTESP-SVEDLTRF-----------------------HSKSPISHI 700 (771)
Q Consensus 664 -~~~~~~~~---~~~~~---------------~~~~~~~-~~~~~~~~-----------------------~~~sp~~~~ 700 (771)
........ ..... ......+ .......+ ...+....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (297)
T d1q0ra_ 153 PQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAEL 232 (297)
T ss_dssp CCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGGG
T ss_pred hhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccchhhh
Confidence 00000000 00000 0000000 00000000 011122346
Q ss_pred cCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 701 SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 701 ~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++++|+|+++|++|..+|++.++.+.+.+. +.++++++++||.+. .+...++.+.|++||+.
T Consensus 233 ~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~~l~~ 295 (297)
T d1q0ra_ 233 REVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHALP-SSVHGPLAEVILAHTRS 295 (297)
T ss_dssp GGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSSCC-GGGHHHHHHHHHHHHHH
T ss_pred hccCCceEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCcch-hhCHHHHHHHHHHHHHh
Confidence 7889999999999999999998888776664 479999999999876 34445667777777764
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=1.9e-19 Score=182.02 Aligned_cols=236 Identities=16% Similarity=0.129 Sum_probs=141.3
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+.+-+|.+++...+..+ +..|+||++||+++. ...|...+..++++||.|+++|+|| +|.+... ..
T Consensus 6 ~~~~~g~~i~y~~~g~~-----~~~~~iv~lHG~~g~--~~~~~~~~~~~~~~~~~vi~~D~~G---~G~S~~~----~~ 71 (290)
T d1mtza_ 6 YAKVNGIYIYYKLCKAP-----EEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFG---CGRSEEP----DQ 71 (290)
T ss_dssp EEEETTEEEEEEEECCS-----SCSEEEEEECCTTTC--CSGGGGGGGGGGGGTEEEEEECCTT---STTSCCC----CG
T ss_pred eEEECCEEEEEEEcCCC-----CCCCeEEEECCCCCc--hHHHHHHHHHHHHCCCEEEEEeCCC---Ccccccc----cc
Confidence 34457888876666432 235889999998755 3355556667778899999999999 4443211 11
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh-------cC------
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-------GT------ 659 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-------~~------ 659 (771)
....+++..+.+..++++- ...+++.|+||||||.+++.++.++|++++++++.++........ ..
T Consensus 72 ~~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (290)
T d1mtza_ 72 SKFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYR 150 (290)
T ss_dssp GGCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHH
T ss_pred ccccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhhhhhhhhhhhHHHH
Confidence 1122333333333333321 124689999999999999999999999999999988865431110 00
Q ss_pred ---------CCCCcchhh---hhccCCCCCcCCCCCChhhHH---H---------------------HhhcCccccccCC
Q 004149 660 ---------TDIPDWCYV---ESYGSKGKDSFTESPSVEDLT---R---------------------FHSKSPISHISKV 703 (771)
Q Consensus 660 ---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~---------------------~~~~sp~~~~~~i 703 (771)
.......+. ............. ....... . ....+....+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (290)
T d1mtza_ 151 DAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSED-WPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAI 229 (290)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSC-CCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGC
T ss_pred HHHHHhhhhccccchhHHHHHHHHhhhhhccccc-chHHHHHHHHHHhhhhhhhhhcchhHHhHhhhhhcccHHHHhhcc
Confidence 000000000 0000000000000 0000000 0 0011222345678
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
++|+|+++|++|.++| +.+..+.+.+. ++++++++++||.+.. +...++.+.|.+||.+||
T Consensus 230 ~~P~l~i~G~~D~~~~-~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~FL~~h~ 290 (290)
T d1mtza_ 230 KIPTLITVGEYDEVTP-NVARVIHEKIA----GSELHVFRDCSHLTMW-EDREGYNKLLSDFILKHL 290 (290)
T ss_dssp CSCEEEEEETTCSSCH-HHHHHHHHHST----TCEEEEETTCCSCHHH-HSHHHHHHHHHHHHHTCC
T ss_pred cceEEEEEeCCCCCCH-HHHHHHHHHCC----CCEEEEECCCCCchHH-hCHHHHHHHHHHHHHHhC
Confidence 8999999999998765 56666666554 3789999999997653 345678899999999986
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.79 E-value=4.8e-19 Score=173.25 Aligned_cols=220 Identities=14% Similarity=0.107 Sum_probs=134.7
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.++||++||.+.+ ...|...++.|+++||.|+++|+||.+ .+...... ........++..++..+... +.+
T Consensus 11 ~~~vvliHG~~~~--~~~~~~l~~~L~~~G~~v~~~D~~G~G---~s~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHG---VPPEELVH-TGPDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTTSS---SCHHHHTT-CCHHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCCCc---cccccccc-cchhHHHHHHHHHHhhhhhc---ccC
Confidence 4678899997655 456888899999999999999999954 33222111 11112244555555555444 357
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcc--hhhhhccCC------CC-CcCCCCCChhh
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW--CYVESYGSK------GK-DSFTESPSVED 687 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~------~~-~~~~~~~~~~~ 687 (771)
+++|+|||+||.+++.++.++|.....++.............. ....+ ......... .. ...........
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYE-GVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLK 160 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHH-HHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhh
Confidence 8999999999999999999988765444332222111000000 00000 000000000 00 00000000011
Q ss_pred HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
............+..+++|+|+++|++|..+|++.++.+++.+. +.++++++++++||.+...+...++.+.+.+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~ 238 (242)
T d1tqha_ 161 ALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLE 238 (242)
T ss_dssp HHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCC--CSSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHH
T ss_pred cccccccccccccceeccccceeecccCCccCHHHHHHHHHHcC--CCCcEEEEECCCCCcCccccCHHHHHHHHHHHHH
Confidence 11111122334567889999999999999999999999888774 3458999999999987766667788999999998
Q ss_pred H
Q 004149 768 K 768 (771)
Q Consensus 768 ~ 768 (771)
+
T Consensus 239 ~ 239 (242)
T d1tqha_ 239 S 239 (242)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.79 E-value=4.5e-19 Score=185.06 Aligned_cols=242 Identities=15% Similarity=0.126 Sum_probs=163.8
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC--CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV--SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~--~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.||.+|.+.+|+|+ ..++.|+||+.||.+... ....+...++.|+++||+|+++|.||.++++..+ ...
T Consensus 13 rDGv~L~~~vy~P~---~~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G~~------~~~ 83 (347)
T d1ju3a2 13 RDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEF------VPH 83 (347)
T ss_dssp TTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCSCC------CTT
T ss_pred CCCCEEEEEEEEcC---CCCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCCcc------ccc
Confidence 47899999999998 467899999999833211 1112233467899999999999999988776543 223
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC--CCCCc------c
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--TDIPD------W 665 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--~~~~~------~ 665 (771)
.....|..++++|+.+++..| .||+++|+|+||++++++|+..|..++|++..++..++...... ..... |
T Consensus 84 ~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~~~~~~~~~~ 162 (347)
T d1ju3a2 84 VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGW 162 (347)
T ss_dssp TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCccchhhHHHH
Confidence 345678899999999998876 79999999999999999999889999999999888764211000 00000 0
Q ss_pred hhhh---hccC-------------------------CCCCcCCCCC---------------ChhhHHHHhhcCccccccC
Q 004149 666 CYVE---SYGS-------------------------KGKDSFTESP---------------SVEDLTRFHSKSPISHISK 702 (771)
Q Consensus 666 ~~~~---~~~~-------------------------~~~~~~~~~~---------------~~~~~~~~~~~sp~~~~~~ 702 (771)
.... .... .......... .......+...++...+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 242 (347)
T d1ju3a2 163 SALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQSISLFERLGG 242 (347)
T ss_dssp HHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHHTTCCHHHHTT
T ss_pred HHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhhcCCHHHHhhc
Confidence 0000 0000 0000000000 0011234556678888999
Q ss_pred CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC------------CCCChHHHHHHHHHHHHHHh
Q 004149 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE------------RPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 703 i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~------------~~~~~~~~~~~i~~wl~~~l 770 (771)
+++|+|+++|..|..+ ..+.+++++++. +.+.++++.|. +|... ......+....+++||++||
T Consensus 243 i~vP~L~i~G~~D~~~--~~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~~~~~~~~~~~~l~wfD~~L 318 (347)
T d1ju3a2 243 LATPALITAGWYDGFV--GESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEATTMHKAFFDRHL 318 (347)
T ss_dssp CCCCEEEEEEEECTTH--HHHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGGSCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeccccCCCc--chhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999876 456777887764 56778887765 45432 12234567788999999999
Q ss_pred C
Q 004149 771 K 771 (771)
Q Consensus 771 ~ 771 (771)
|
T Consensus 319 K 319 (347)
T d1ju3a2 319 R 319 (347)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.78 E-value=1.5e-18 Score=175.16 Aligned_cols=233 Identities=17% Similarity=0.175 Sum_probs=137.2
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+..++++..-+ ...|+||++||.+.... ...|...+..|+ +||.|+++|+|| +|.+.............
T Consensus 13 ~~~~h~~~~G~------~~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~ 82 (281)
T d1c4xa_ 13 TLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIG---FGQSEYPETYPGHIMSW 82 (281)
T ss_dssp TSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTT---STTSCCCSSCCSSHHHH
T ss_pred CEEEEEEEEec------CCCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCC---Cccccccccccccchhh
Confidence 46677665433 34589999999664422 123556677775 489999999999 55443211111111112
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch--------hhhhcCCCCCcchhh
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALMVGTTDIPDWCYV 668 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~--------~~~~~~~~~~~~~~~ 668 (771)
.++....+..+++. ...+++.++||||||.+++.+|.++|++++++|+.++.... ..+......+.....
T Consensus 83 ~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (281)
T d1c4xa_ 83 VGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTPY 160 (281)
T ss_dssp HHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHHHH
T ss_pred HHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhcccchh
Confidence 33333333333333 13468999999999999999999999999999998875321 001000000000000
Q ss_pred hhccCCCCCcCCCCCChh-hHH----------------HH---------hhcCccccccCCCCcEEEEeeCCCCccCcHH
Q 004149 669 ESYGSKGKDSFTESPSVE-DLT----------------RF---------HSKSPISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~-~~~----------------~~---------~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~ 722 (771)
..............+... ... .. ....+...+.++++|+|+++|++|..+|++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~ 240 (281)
T d1c4xa_ 161 RELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDT 240 (281)
T ss_dssp HHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCSSSCTHH
T ss_pred hhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccceEEEEeCCCCCcCHHH
Confidence 000000000000000000 000 00 0112223467889999999999999999998
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 723 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
++.+.+.++ ++++.+++++||.... +...++.+.+.+||+
T Consensus 241 ~~~~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 241 SLYLTKHLK----HAELVVLDRCGHWAQL-ERWDAMGPMLMEHFR 280 (281)
T ss_dssp HHHHHHHCS----SEEEEEESSCCSCHHH-HSHHHHHHHHHHHHH
T ss_pred HHHHHHHCC----CCEEEEECCCCCchHH-hCHHHHHHHHHHHhC
Confidence 888877664 3789999999997653 445678888999986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=5.1e-18 Score=177.25 Aligned_cols=197 Identities=11% Similarity=0.049 Sum_probs=139.4
Q ss_pred CccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEE
Q 004149 37 ISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 116 (771)
Q Consensus 37 ~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~ 116 (771)
+|+....-+.|. ||++|||..+ +.++++++ .++..+++... ..+..++|||||++|++.
T Consensus 2 ~~~~~~~~fSP~---dG~~~a~~~~----------g~v~v~d~--~~~~~~~~~~~------~~v~~~~~spDg~~l~~~ 60 (360)
T d1k32a3 2 IPSKFAEDFSPL---DGDLIAFVSR----------GQAFIQDV--SGTYVLKVPEP------LRIRYVRRGGDTKVAFIH 60 (360)
T ss_dssp CGGGGEEEEEEC---GGGCEEEEET----------TEEEEECT--TSSBEEECSCC------SCEEEEEECSSSEEEEEE
T ss_pred CchhhcccccCC---CCCEEEEEEC----------CeEEEEEC--CCCcEEEccCC------CCEEEEEECCCCCEEEEE
Confidence 566666565553 9999999742 36788765 34455665422 568899999999999998
Q ss_pred ecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCcc
Q 004149 117 RNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 194 (771)
Q Consensus 117 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (771)
+..++ ..+.+| .++..+++......+ ..++|||||++|++...
T Consensus 61 ~~~~g---~~v~v~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~~---------------------- 105 (360)
T d1k32a3 61 GTREG---DFLGIYDYRTGKAEKFEENLGNV----------FAMGVDRNGKFAVVAND---------------------- 105 (360)
T ss_dssp EETTE---EEEEEEETTTCCEEECCCCCCSE----------EEEEECTTSSEEEEEET----------------------
T ss_pred EcCCC---CEEEEEECCCCcEEEeeCCCceE----------Eeeeecccccccceecc----------------------
Confidence 76541 234455 444444443333333 58999999999999743
Q ss_pred CCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004149 195 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 195 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
...+++|++++++...+. .........++|||||+. |+|.........
T Consensus 106 ----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~----la~~~~~~~~~~----- 153 (360)
T d1k32a3 106 ----------------------RFEIMTVDLETGKPTVIE-RSREAMITDFTISDNSRF----IAYGFPLKHGET----- 153 (360)
T ss_dssp ----------------------TSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTTSCE----EEEEEEECSSTT-----
T ss_pred ----------------------ccccccccccccceeeee-ecccccccchhhccceee----eeeeccccccce-----
Confidence 357899999998877663 234446778999999999 999874433111
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.......++++++ .+++...++........+.|||||++|+|.+.+.
T Consensus 154 ~~~~~~~~~v~d~-----------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~ 200 (360)
T d1k32a3 154 DGYVMQAIHVYDM-----------------EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 200 (360)
T ss_dssp CSCCEEEEEEEET-----------------TTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred eeccccceeeecc-----------------ccCceeeecccccccccccccCCCCEEEEEeCCC
Confidence 1122346888898 7788888888888888999999999999998764
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.78 E-value=1.8e-17 Score=159.68 Aligned_cols=198 Identities=17% Similarity=0.233 Sum_probs=147.8
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~---~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|++++..|+ ....|++|++||.+. ++........++.|+++||.|+.+||||.+.+... ...+..
T Consensus 10 G~Le~~~~~~~----~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~------~~~~~~ 79 (218)
T d2i3da1 10 GRLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE------FDHGAG 79 (218)
T ss_dssp EEEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------CCSSHH
T ss_pred ccEEEEEeCCC----CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCccc------cccchh
Confidence 38999876443 445699999998542 21122234567789999999999999996655332 234556
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
+.+|..++++|+..+.. ...++.++|+|+||.+++.++.+.+. ..++++..|.....
T Consensus 80 e~~d~~aa~~~~~~~~~-~~~~~~~~g~S~G~~~a~~~a~~~~~-~~~~~~~~~~~~~~--------------------- 136 (218)
T d2i3da1 80 ELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTY--------------------- 136 (218)
T ss_dssp HHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTS---------------------
T ss_pred HHHHHHHHHhhhhcccc-cccceeEEeeehHHHHHHHHHHhhcc-ccceeecccccccc---------------------
Confidence 78999999999998764 34578999999999999999888654 55666665543210
Q ss_pred CCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC-CCCEEEEEeCCCCccCCCCCC
Q 004149 676 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~~~ 754 (771)
....+....+|+|+++|+.|.+++..+..++.+.++.. +..++++++++++|.|. ..
T Consensus 137 --------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~--g~ 194 (218)
T d2i3da1 137 --------------------DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN--GK 194 (218)
T ss_dssp --------------------CCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--TC
T ss_pred --------------------chhhccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCc--CC
Confidence 01122335689999999999999999999999998864 56789999999999876 34
Q ss_pred hHHHHHHHHHHHHHHhC
Q 004149 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~wl~~~l~ 771 (771)
..++.+.+.+||+++|.
T Consensus 195 ~~~l~~~v~~~l~~~l~ 211 (218)
T d2i3da1 195 VDELMGECEDYLDRRLN 211 (218)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 46788999999999873
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.78 E-value=2.9e-18 Score=180.11 Aligned_cols=253 Identities=13% Similarity=0.122 Sum_probs=158.9
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCC----CCCCC-----cchHHHHHHHHCCcEEEEECCCCCCCCChhh
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH----SVSLS-----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~----~~~~~-----~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~ 584 (771)
+-.||.+|.+.+|+|+ ..++.|+||+.|+-+. ..... .+....+.|+++||+|+.+|.||.++++..+
T Consensus 30 ~~rDG~~L~~~v~~P~---~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~ 106 (381)
T d1mpxa2 30 PMRDGVKLHTVIVLPK---GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDY 106 (381)
T ss_dssp ECTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred ECCCCCEEEEEEEEeC---CCCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEecCccCCCCCce
Confidence 3457899999999998 4678999999986211 11111 1123457899999999999999987776654
Q ss_pred hhc-----CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC
Q 004149 585 LQS-----LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659 (771)
Q Consensus 585 ~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 659 (771)
... ........+++|+.++++|+.++..++.+||+++|+|+||++++++|...|+.++|+|..+|+.+.......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~~~~d~~~~~~~ 186 (381)
T d1mpxa2 107 VMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDW 186 (381)
T ss_dssp CTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTTSSS
T ss_pred eccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeecccccccccccc
Confidence 321 112233456899999999999997788899999999999999999999999999999999998875321110
Q ss_pred CC--CCcchhhh----hccCCCCCcC--CCCCC----------h---------------h-------hHHHHhhcCccc-
Q 004149 660 TD--IPDWCYVE----SYGSKGKDSF--TESPS----------V---------------E-------DLTRFHSKSPIS- 698 (771)
Q Consensus 660 ~~--~~~~~~~~----~~~~~~~~~~--~~~~~----------~---------------~-------~~~~~~~~sp~~- 698 (771)
.. ........ .......... ..... . . ....+...++..
T Consensus 187 ~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~ 266 (381)
T d1mpxa2 187 FNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQALDKV 266 (381)
T ss_dssp EETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCHHHH
T ss_pred ccCchhhhccHHHHHhhhhhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCccchhhhcCchhh
Confidence 00 00000000 0000000000 00000 0 0 001222333433
Q ss_pred -cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh---CCCCEEEEEeCCCCccCC------------CCCC-hHHHHHH
Q 004149 699 -HISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVHGIE------------RPQS-DFESFLN 761 (771)
Q Consensus 699 -~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~------------~~~~-~~~~~~~ 761 (771)
...++++|+|+++|..|..+... +...++.++. .+.+.++++-|. +|.-. ..+. .......
T Consensus 267 ~~~~~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (381)
T d1mpxa2 267 MARTPLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTARQFRHDV 344 (381)
T ss_dssp HHTSCCCSCEEEEEETTCSSCSSH-HHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHT
T ss_pred hhhccccCceEEEeccccCCcccc-HHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCccccccchhhhhHHHH
Confidence 34568899999999999876544 4455555543 356788988876 67421 1121 2223455
Q ss_pred HHHHHHHHhC
Q 004149 762 IGLWFKKYCK 771 (771)
Q Consensus 762 i~~wl~~~l~ 771 (771)
+++||++|||
T Consensus 345 ~l~wFD~~LK 354 (381)
T d1mpxa2 345 LRPFFDQYLV 354 (381)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 7899999997
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.77 E-value=4.2e-19 Score=187.41 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=146.4
Q ss_pred ccCCCceEEEEEEe--cCCCCCCCCCcEEEEEcCCCCCCCCCcc------hHHHHHHHHCCcEEEEECCCCCCCCChhhh
Q 004149 514 TKGAQKPFEAIFVS--SSHKKDCSCDPLIVVLHGGPHSVSLSSY------SKSLAFLSSVGYSLLIVNYRGSLGFGEEAL 585 (771)
Q Consensus 514 ~~~~g~~l~~~~~~--P~~~~~~~~~p~vv~~HGg~~~~~~~~~------~~~~~~la~~G~~V~~~d~rG~~~~g~~~~ 585 (771)
...||..|..+.+. +.+....+++|+||++||.+.+. ..| ...+..|+++||.|+++|+||.|.+.....
T Consensus 33 ~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~--~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~G~S~~~~~ 110 (377)
T d1k8qa_ 33 VTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA--TNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLY 110 (377)
T ss_dssp ECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG--GGGSSSCTTTCHHHHHHHTTCEEEECCCTTSTTSCEESS
T ss_pred EcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccch--hHHhhcCccchHHHHHHHCCCEEEEEcCCCCCCCCCCCC
Confidence 34567666655443 33334556789999999976553 233 236789999999999999999554432110
Q ss_pred hc-CCCC-----ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEe---cCCccchhhh
Q 004149 586 QS-LPGK-----VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA---RNPLCNLALM 656 (771)
Q Consensus 586 ~~-~~~~-----~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~---~~p~~~~~~~ 656 (771)
.. .... +......|+.++++++.+.. ..+++.|+||||||.+++.++..+|+.++.+++ .+|.......
T Consensus 111 ~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~ 188 (377)
T d1k8qa_ 111 YSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYT 188 (377)
T ss_dssp SCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCSCCSSC
T ss_pred CCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhceeEeeccccccccch
Confidence 00 0001 11123568889999988763 357899999999999999999999876544433 3332211000
Q ss_pred ----hcCCCC---------------Ccchhhh----------------------hccC--CCC-----CcC-CCCCC---
Q 004149 657 ----VGTTDI---------------PDWCYVE----------------------SYGS--KGK-----DSF-TESPS--- 684 (771)
Q Consensus 657 ----~~~~~~---------------~~~~~~~----------------------~~~~--~~~-----~~~-~~~~~--- 684 (771)
...... +...... ..+. ... ..+ ...+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (377)
T d1k8qa_ 189 ETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTS 268 (377)
T ss_dssp CSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHHTTCCCCEE
T ss_pred hhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcccccHHHhhhhhhcccccch
Confidence 000000 0000000 0000 000 000 00000
Q ss_pred ------------------------hhhHHHHh-hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004149 685 ------------------------VEDLTRFH-SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 685 ------------------------~~~~~~~~-~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
......+. ...+...+.++++|+|+++|++|.+++++..+.+.+.+.+ .+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~~~~~~~l~~~lp~---~~~~ 345 (377)
T d1k8qa_ 269 VQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPN---LIYH 345 (377)
T ss_dssp HHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCTT---EEEE
T ss_pred HHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccCHHHHHHHHHHCCC---CeEE
Confidence 00000000 1122234678899999999999999999988887776654 2678
Q ss_pred EEeCCCCcc--CCCCCChHHHHHHHHHHHHH
Q 004149 740 IVFPNDVHG--IERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~ 768 (771)
++++++||. +...+...+++..|++||++
T Consensus 346 ~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 346 RKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp EEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred EEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 899999996 23456677889999999974
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.7e-18 Score=166.14 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=128.9
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC------CCCChhhhhcCCCCc-cccc---hhhHHHH
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS------LGFGEEALQSLPGKV-GSQD---VNDVLTA 603 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~------~~~g~~~~~~~~~~~-~~~~---~~D~~~~ 603 (771)
.+..++||++||.+.+ ...|......+...++.+++|+-+.. ...+..|........ ...+ +++..+.
T Consensus 18 ~~~~~~VI~lHG~G~~--~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~~ 95 (229)
T d1fj2a_ 18 RKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAEN 95 (229)
T ss_dssp SCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCC--HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHHH
Confidence 4456799999996554 23454555556677899999874311 001112211110000 1111 2222223
Q ss_pred HHHHHH---cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCC
Q 004149 604 IDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFT 680 (771)
Q Consensus 604 i~~l~~---~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (771)
++.+++ +..++.+||+|+|+|+||.+++.++.++|+.++++++.++........ ..
T Consensus 96 l~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~--------------~~------- 154 (229)
T d1fj2a_ 96 IKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF--------------PQ------- 154 (229)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS--------------CS-------
T ss_pred HHHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCccccccccccccccc--------------cc-------
Confidence 332222 234899999999999999999999999999999999988753211100 00
Q ss_pred CCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC--CCCEEEEEeCCCCccCCCCCChHHH
Q 004149 681 ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK--GVETKVIVFPNDVHGIERPQSDFES 758 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~--g~~~~~~~~~~~~H~~~~~~~~~~~ 758 (771)
.+ ......++|+|++||++|.+||++.+++.++.|++. +.++++..|++.+|.+. .+.
T Consensus 155 --------------~~-~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~~ 214 (229)
T d1fj2a_ 155 --------------GP-IGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQE 214 (229)
T ss_dssp --------------SC-CCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHH
T ss_pred --------------cc-cccccccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HHH
Confidence 00 011123579999999999999999999999999873 56899999999999875 456
Q ss_pred HHHHHHHHHHHh
Q 004149 759 FLNIGLWFKKYC 770 (771)
Q Consensus 759 ~~~i~~wl~~~l 770 (771)
+..+.+||+++|
T Consensus 215 ~~~~~~wL~~~L 226 (229)
T d1fj2a_ 215 MMDVKQFIDKLL 226 (229)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhHC
Confidence 789999999987
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.76 E-value=6.7e-18 Score=169.31 Aligned_cols=228 Identities=16% Similarity=0.199 Sum_probs=136.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..||.++++..+ + ..|+||++||.+.+ ...|...+..|+++||.|+++|+||. |.+... ...
T Consensus 5 t~dG~~l~y~~~------G--~g~~ivlvHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~---G~S~~~-----~~~ 66 (274)
T d1a8qa_ 5 TRDGVEIFYKDW------G--QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRGH---GHSTPV-----WDG 66 (274)
T ss_dssp CTTSCEEEEEEE------C--SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC-----SSC
T ss_pred CcCCCEEEEEEE------C--CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCCC---cccccc-----ccc
Confidence 346777775543 1 23678999997655 45788888899999999999999994 443211 111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh-CCCceeEEEecCCccchhhhhcCCCCCcch-------
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWC------- 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~------- 666 (771)
....+....+..+++. +..+++.++|||+||.+++.++++ .|++++++++.++.................
T Consensus 67 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (274)
T d1a8qa_ 67 YDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFDALK 144 (274)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred ccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHHHHHHH
Confidence 2334444444444443 245789999999999998886654 588999998887643221110000000000
Q ss_pred ---------h----hhhccCCCCCcCCCCCChhh-------------------HHHHhhcCccccccCCCCcEEEEeeCC
Q 004149 667 ---------Y----VESYGSKGKDSFTESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 667 ---------~----~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~ 714 (771)
+ ...+.. ............ ...+...+....+.++++|+|+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~ 222 (274)
T d1a8qa_ 145 NGVLTERSQFWKDTAEGFFS--ANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDD 222 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETT
T ss_pred hhhhhhhHHHhhhhhhhhhh--ccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccceeeeeccCC
Confidence 0 000000 000000000000 011112223345778999999999999
Q ss_pred CCccCcHHHHH-HHHHHHhCCCCEEEEEeCCCCccCCC-CCChHHHHHHHHHHHHH
Q 004149 715 DLRVPVSNGLQ-YARALREKGVETKVIVFPNDVHGIER-PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 715 D~~vp~~~~~~-~~~~l~~~g~~~~~~~~~~~~H~~~~-~~~~~~~~~~i~~wl~~ 768 (771)
|..+|++...+ +.+.++ ++++++++++||.... .+...++.+.+.+||++
T Consensus 223 D~~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 223 DQVVPIDATGRKSAQIIP----NAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp CSSSCGGGTHHHHHHHST----TCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHhCC----CCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 99999876544 333332 4789999999998654 34455777889999864
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.76 E-value=4.8e-18 Score=162.93 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=132.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-CCCcc----ccchhhHHHHHHHH
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGKVG----SQDVNDVLTAIDHV 607 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~-~~~~~----~~~~~D~~~~i~~l 607 (771)
+.+++|+||++||.+.+ ...|...++.|+ .++.+++++.+.....+..+.... .+... ....+++.+.|+.+
T Consensus 19 ~~~~~p~vv~lHG~g~~--~~~~~~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 95 (209)
T d3b5ea1 19 GKESRECLFLLHGSGVD--ETTLVPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEA 95 (209)
T ss_dssp TSSCCCEEEEECCTTBC--TTTTHHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCC--HHHHHHHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHH
Confidence 45678999999997654 345666777775 479999998753222222211110 11000 11245566667777
Q ss_pred HHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhh
Q 004149 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 608 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
.++..+|.+||+|+|+|+||++++.++.++|++++++++.+|.....
T Consensus 96 ~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~--------------------------------- 142 (209)
T d3b5ea1 96 AKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD--------------------------------- 142 (209)
T ss_dssp HHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS---------------------------------
T ss_pred HHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc---------------------------------
Confidence 77767899999999999999999999999999999999988853210
Q ss_pred HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.......++|++++||++|++++ +.+.++.+.|++.|.++++.++++ +|.+. .+..+.+.+||.
T Consensus 143 --------~~~~~~~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~-----~~~~~~~~~wl~ 207 (209)
T d3b5ea1 143 --------HVPATDLAGIRTLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIPS-GHDIG-----DPDAAIVRQWLA 207 (209)
T ss_dssp --------SCCCCCCTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEESC-CSCCC-----HHHHHHHHHHHH
T ss_pred --------cccccccccchheeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEECC-CCCCC-----HHHHHHHHHHhC
Confidence 000112345899999999999997 677889999999999999999987 79885 345677888884
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.75 E-value=3e-18 Score=172.98 Aligned_cols=216 Identities=16% Similarity=0.203 Sum_probs=129.1
Q ss_pred CcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.|+||++||.+.+. ..|.. .+..+.+.||.|+++|+|| +|.+.... .......+..+.+..+++. +
T Consensus 30 G~~ivllHG~~~~~--~~~~~~~~~l~~~~~~g~~v~~~D~~G---~G~S~~~~----~~~~~~~~~~~~i~~li~~--l 98 (283)
T d2rhwa1 30 GETVIMLHGGGPGA--GGWSNYYRNVGPFVDAGYRVILKDSPG---FNKSDAVV----MDEQRGLVNARAVKGLMDA--L 98 (283)
T ss_dssp SSEEEEECCCSTTC--CHHHHHTTTHHHHHHTTCEEEEECCTT---STTSCCCC----CSSCHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCCCCCh--hHHHHHHHHHHHHHHCCCEEEEEeCCC---Cccccccc----ccccccchhhhhccccccc--c
Confidence 37899999976553 23333 3445678999999999999 44432111 1111122222333333333 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcch-hhhhccCC-------C---CCcCCCC
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC-YVESYGSK-------G---KDSFTES 682 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~-------~---~~~~~~~ 682 (771)
+.+++.++|||+||.+++.++.++|++++++|+.+|..-.............. ........ . .......
T Consensus 99 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (283)
T d2rhwa1 99 DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSL 178 (283)
T ss_dssp TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGG
T ss_pred cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhccccc
Confidence 34689999999999999999999999999999988753211100000000000 00000000 0 0000000
Q ss_pred CChhhH--------------HH---------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004149 683 PSVEDL--------------TR---------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 683 ~~~~~~--------------~~---------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
...+.. .. ....+....+.++++|+|+++|++|.++|++.++.+.+.+. ++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~ 254 (283)
T d2rhwa1 179 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARL 254 (283)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEE
T ss_pred CcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhCC----CCEE
Confidence 000000 00 01112334567889999999999999999999988887764 3899
Q ss_pred EEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 740 IVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++++++||.+.. +...++.+.|.+||++
T Consensus 255 ~~i~~~gH~~~~-e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 255 HVFSKCGHWAQW-EHADEFNRLVIDFLRH 282 (283)
T ss_dssp EEESSCCSCHHH-HTHHHHHHHHHHHHHH
T ss_pred EEECCCCCchHH-hCHHHHHHHHHHHHhC
Confidence 999999997653 4456788899999976
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.75 E-value=4e-17 Score=163.56 Aligned_cols=232 Identities=14% Similarity=0.177 Sum_probs=139.6
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...||.+|++..+.|+ ..|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ..
T Consensus 4 ~~~dG~~l~y~~~G~~------~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~~-----~~ 67 (275)
T d1a88a_ 4 TTSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRG---HGRSDQP-----ST 67 (275)
T ss_dssp ECTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SS
T ss_pred EecCCCEEEEEEecCC------CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---ccccccc-----cc
Confidence 4567899988888664 23678999997765 4568888899999999999999999 4444211 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcCh-hHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC--CCCcch----
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH-GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--DIPDWC---- 666 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~-GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~--~~~~~~---- 666 (771)
....+++.+.+..+++. ++.+++.++|||+ ||.++..++.++|++++++++.++........... ......
T Consensus 68 ~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (275)
T d1a88a_ 68 GHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEF 145 (275)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHHHH
T ss_pred ccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhhhhhhhhh
Confidence 22344444444444443 2346788899887 66666777888999999999887643211000000 000000
Q ss_pred ----------h-hhhccCCCCCc--CCCCCChhhHH-------------------HHhhcCccccccCCCCcEEEEeeCC
Q 004149 667 ----------Y-VESYGSKGKDS--FTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 667 ----------~-~~~~~~~~~~~--~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~P~Lii~G~~ 714 (771)
+ ........... ........... .+...+....+.++++|+|+++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~ 225 (275)
T d1a88a_ 146 RAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTD 225 (275)
T ss_dssp HHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETT
T ss_pred hhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccccceeecCC
Confidence 0 00000000000 00000000000 0111222234667899999999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
|..+|.....+....+ ..++++++++++||.+.. +...++.+.|.+||+
T Consensus 226 D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 226 DQVVPYADAAPKSAEL---LANATLKSYEGLPHGMLS-THPEVLNPDLLAFVK 274 (275)
T ss_dssp CSSSCSTTTHHHHHHH---STTEEEEEETTCCTTHHH-HCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHh---CCCCEEEEECCCCCchHH-hCHHHHHHHHHHHHc
Confidence 9999987655443332 234899999999997654 355688899999986
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.1e-17 Score=172.12 Aligned_cols=232 Identities=17% Similarity=0.202 Sum_probs=144.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.++++... + ..|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.. +......
T Consensus 19 ~~g~~i~y~~~------G--~gp~vlllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~---~~~~~~~ 82 (322)
T d1zd3a2 19 KPRVRLHFVEL------G--SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKG---YGESSA---PPEIEEY 82 (322)
T ss_dssp ETTEEEEEEEE------C--CSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEEECTT---STTSCC---CSCGGGG
T ss_pred CCCCEEEEEEE------c--CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEecccc---cccccc---ccccccc
Confidence 35777775543 2 23889999997765 4578888999999999999999999 554421 1122223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-------------------hh
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------------------LM 656 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-------------------~~ 656 (771)
..++....+..+++. ++.+++.++||||||.+++.+|.++|++++++|+.++..... ..
T Consensus 83 ~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (322)
T d1zd3a2 83 CMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLY 160 (322)
T ss_dssp SHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSSSCHHHHHHTCGGGHHHHH
T ss_pred cccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcccccccccccchhhhhhccchhhhHHh
Confidence 456666666666655 345789999999999999999999999999999876432100 00
Q ss_pred hc----------------------CCCCC---cchhhhhccC--CC--CCcCCCCCChhhHHHH----------------
Q 004149 657 VG----------------------TTDIP---DWCYVESYGS--KG--KDSFTESPSVEDLTRF---------------- 691 (771)
Q Consensus 657 ~~----------------------~~~~~---~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~---------------- 691 (771)
.. ..... .......... .. ...............+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (322)
T d1zd3a2 161 FQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 240 (322)
T ss_dssp TTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHHHHHTTHHHHHTT
T ss_pred hhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHHHHHHHHhhcccccccccc
Confidence 00 00000 0000000000 00 0000000011110000
Q ss_pred ------hhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHH
Q 004149 692 ------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765 (771)
Q Consensus 692 ------~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~w 765 (771)
....+.....++++|+|+++|++|..++++..+.+.+.+. +.++++++++||... .+...++.+.|.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~-~e~p~~v~~~i~~F 315 (322)
T d1zd3a2 241 RNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWTQ-MDKPTEVNQILIKW 315 (322)
T ss_dssp SCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCHH-HHSHHHHHHHHHHH
T ss_pred cccccccccchhhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHH
Confidence 0111223356789999999999999999887766655443 478899999999765 34456788899999
Q ss_pred HHHHh
Q 004149 766 FKKYC 770 (771)
Q Consensus 766 l~~~l 770 (771)
|+.+-
T Consensus 316 L~~~~ 320 (322)
T d1zd3a2 316 LDSDA 320 (322)
T ss_dssp HHHHT
T ss_pred HhhcC
Confidence 99874
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.74 E-value=1.5e-17 Score=166.52 Aligned_cols=230 Identities=16% Similarity=0.140 Sum_probs=141.4
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
-+|..+++..+ ++ .|+||++||.+..... ..|...+..| +.||.|+++|+||. |.+... ....
T Consensus 10 ~~G~~~~Y~~~------G~--G~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G~---G~S~~~----~~~~ 73 (271)
T d1uk8a_ 10 AAGVLTNYHDV------GE--GQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVGF---GFTDRP----ENYN 73 (271)
T ss_dssp ETTEEEEEEEE------CC--SSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTS---TTSCCC----TTCC
T ss_pred ECCEEEEEEEE------ee--CCeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCCC---CCcccc----cccc
Confidence 36777775543 22 3678999997654221 2244455666 46999999999994 443211 1122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-------hhhcCCCCCcc--
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------LMVGTTDIPDW-- 665 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-------~~~~~~~~~~~-- 665 (771)
...++....+..+.+. .+.+++.|+||||||.+++.++.++|+.++++|+.++..... ...........
T Consensus 74 ~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (271)
T d1uk8a_ 74 YSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIENMR 151 (271)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHHHH
T ss_pred ccccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHHHH
Confidence 2456666677777666 345789999999999999999999999999999887754210 00000000000
Q ss_pred hhhhhccCCC----------------C----CcCC-CCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHH
Q 004149 666 CYVESYGSKG----------------K----DSFT-ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 666 ~~~~~~~~~~----------------~----~~~~-~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~ 724 (771)
.....+.... . ..+. ...................+.++++|+|+++|++|..+|++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~ 231 (271)
T d1uk8a_ 152 NLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSL 231 (271)
T ss_dssp HHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHHH
T ss_pred HHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCcCHHHHH
Confidence 0000000000 0 0000 00000000001112223456789999999999999999999888
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
.+.+.+.+ +++++++++||.+. .+...++.+.|.+||++
T Consensus 232 ~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 232 RLGELIDR----AQLHVFGRCGHWTQ-IEQTDRFNRLVVEFFNE 270 (271)
T ss_dssp HHHHHCTT----EEEEEESSCCSCHH-HHTHHHHHHHHHHHHHT
T ss_pred HHHHhCCC----CEEEEECCCCCchH-HHCHHHHHHHHHHHHhc
Confidence 88777643 78999999999765 34556888999999985
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.73 E-value=1.2e-17 Score=166.84 Aligned_cols=232 Identities=16% Similarity=0.186 Sum_probs=140.8
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
|...||.+|++..+ + ..|+||++||++.+ ...|...+..|+++||.|+++|+||. |.+.. ..
T Consensus 3 f~~~dG~~l~y~~~------G--~g~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~---G~S~~-----~~ 64 (271)
T d1va4a_ 3 FVAKDGTQIYFKDW------G--SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRGF---GRSDQ-----PW 64 (271)
T ss_dssp EECTTSCEEEEEEE------S--SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTTS---TTSCC-----CS
T ss_pred EEeECCeEEEEEEE------c--CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEecccc---ccccc-----cc
Confidence 44567888865443 1 23568899997765 45688888999999999999999994 44321 11
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH-HHHhCCCceeEEEecCCccchhhhhcCCC--CCcch---
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH-LIGQAPDKFVAAAARNPLCNLALMVGTTD--IPDWC--- 666 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~-~a~~~p~~~~a~v~~~p~~~~~~~~~~~~--~~~~~--- 666 (771)
.....+++...+..+.+. ++.+++.++|||+||.+++. ++.++|++++++++.++............ .....
T Consensus 65 ~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (271)
T d1va4a_ 65 TGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFAR 142 (271)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHHHHH
T ss_pred cccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhHHHH
Confidence 223455555555555544 34578999999998876654 56678999999998876543211000000 00000
Q ss_pred -----------hhhhccCCCCCc-CCCCCCh-------------------hhHHHHhhcCccccccCCCCcEEEEeeCCC
Q 004149 667 -----------YVESYGSKGKDS-FTESPSV-------------------EDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 667 -----------~~~~~~~~~~~~-~~~~~~~-------------------~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
....+....... ....... .....+...+....+.++++|+|+++|++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~g~~D 222 (271)
T d1va4a_ 143 FKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGD 222 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhcccceeecccCCC
Confidence 000000000000 0000000 000111122333456788999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
..+|++.+.++.+.+. ..+++++++++||.+.. ++..++.+.|.+||++
T Consensus 223 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 223 QIVPFETTGKVAAELI---KGAELKVYKDAPHGFAV-THAQQLNEDLLAFLKR 271 (271)
T ss_dssp SSSCGGGTHHHHHHHS---TTCEEEEETTCCTTHHH-HTHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHhC---CCCEEEEECCCCCchHH-hCHHHHHHHHHHHHCc
Confidence 9999988877766553 23788999999997653 3456788888999864
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.73 E-value=1.6e-16 Score=158.90 Aligned_cols=232 Identities=16% Similarity=0.190 Sum_probs=140.0
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
+|...||..+++... + ..|.||++||.+.+ ...|...+..|.++||.|+++|+||. |.+...
T Consensus 2 ~f~~~dG~~i~y~~~------G--~g~pvvllHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~---G~S~~~----- 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW------G--SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRGH---GRSSQP----- 63 (273)
T ss_dssp EEECTTSCEEEEEEE------S--CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC-----
T ss_pred EEEeeCCcEEEEEEE------C--CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEechhc---Cccccc-----
Confidence 345668888876543 2 23568899997765 45688888999999999999999994 443211
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH-HHHhCCCceeEEEecCCccchhhhhcCCCCCcch----
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH-LIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC---- 666 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~-~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~---- 666 (771)
......+++.+.+..+++. ++.++..++|||+||.+++. ++..+|++++.+++.++.................
T Consensus 64 ~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 141 (273)
T d1a8sa_ 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhhhh
Confidence 1123455555555555544 24467889999998865555 5556799999988887654221110000000000
Q ss_pred ------------hhhhcc-CCC--CCcCCCCCChhhH-------------------HHHhhcCccccccCCCCcEEEEee
Q 004149 667 ------------YVESYG-SKG--KDSFTESPSVEDL-------------------TRFHSKSPISHISKVKTPTIFLLG 712 (771)
Q Consensus 667 ------------~~~~~~-~~~--~~~~~~~~~~~~~-------------------~~~~~~sp~~~~~~i~~P~Lii~G 712 (771)
....+. ... ............. ..+...+....+.++++|+|+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~g 221 (273)
T d1a8sa_ 142 GIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHG 221 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccceEEEec
Confidence 000000 000 0000000000000 011122333456789999999999
Q ss_pred CCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 713 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 713 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
++|..+|.+.+..+.+.+. ..++++++|++||.+.. ++..++.+.|.+||+
T Consensus 222 ~~D~~~~~~~~~~~~~~~~---~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 222 DADQVVPIEASGIASAALV---KGSTLKIYSGAPHGLTD-THKDQLNADLLAFIK 272 (273)
T ss_dssp TTCSSSCSTTTHHHHHHHS---TTCEEEEETTCCSCHHH-HTHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhC---CCCEEEEECCCCCchHH-hCHHHHHHHHHHHcC
Confidence 9999999888777766552 23788999999997653 445678889999986
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.73 E-value=2.4e-17 Score=164.67 Aligned_cols=228 Identities=14% Similarity=0.150 Sum_probs=137.8
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+-+|.++++.. . ++ .|.||++||.+.... ...|...+..| +.||.|+++|+||. |.+.. ...
T Consensus 8 ~~dg~~l~y~~---~---G~--g~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G~---G~S~~-----~~~ 70 (268)
T d1j1ia_ 8 NAGGVETRYLE---A---GK--GQPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLGF---GKTAK-----PDI 70 (268)
T ss_dssp EETTEEEEEEE---E---CC--SSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTTS---TTSCC-----CSS
T ss_pred EECCEEEEEEE---E---cC--CCeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEccccc---ccccC-----Ccc
Confidence 34688886443 2 22 366899999765421 12355566666 56999999999994 44321 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-C---C--CCcchh
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-T---D--IPDWCY 667 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~---~--~~~~~~ 667 (771)
....++....+..+++.-.+ .+++.++|||+||.+++.++.++|++++++|+.+|.......... . . ......
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 149 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhhh
Confidence 22345555555444444222 257899999999999999999999999999998875321111000 0 0 000000
Q ss_pred ---hhhccCCCCCcCCCCCCh-----------hh-------HHHHh----hcCccccccCCCCcEEEEeeCCCCccCcHH
Q 004149 668 ---VESYGSKGKDSFTESPSV-----------ED-------LTRFH----SKSPISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 668 ---~~~~~~~~~~~~~~~~~~-----------~~-------~~~~~----~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~ 722 (771)
...... ..+...... .. ...+. .......+.++++|+|+++|++|..+|++.
T Consensus 150 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~ 226 (268)
T d1j1ia_ 150 VHLVKALTN---DGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVET 226 (268)
T ss_dssp HHHHHHHSC---TTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHH
T ss_pred HHHHHHHhh---hhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCCCHHH
Confidence 000000 000000000 00 00000 111123467889999999999999999988
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 723 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+..+.+.+. ++++++++++||.+. .++..++.+.+.+||++
T Consensus 227 ~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 227 AYKFLDLID----DSWGYIIPHCGHWAM-IEHPEDFANATLSFLSL 267 (268)
T ss_dssp HHHHHHHCT----TEEEEEESSCCSCHH-HHSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCEEEEECCCCCchH-HhCHHHHHHHHHHHHcC
Confidence 888777664 389999999999865 34556888999999975
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.73 E-value=3.4e-18 Score=173.12 Aligned_cols=227 Identities=14% Similarity=0.208 Sum_probs=142.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+-+|.++++..+-|+ ..|+||++||.+.+ ...|...+..|+ .||.|+++|+|| +|.+.. + ...
T Consensus 13 ~~~g~~i~y~~~G~~------~~p~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~d~~G---~G~S~~---~--~~~ 75 (291)
T d1bn7a_ 13 EVLGERMHYVDVGPR------DGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIG---MGKSDK---P--DLD 75 (291)
T ss_dssp EETTEEEEEEEESCS------SSSCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTT---STTSCC---C--SCC
T ss_pred EECCEEEEEEEeCCC------CCCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCC---Cccccc---c--ccc
Confidence 346888887766543 34679999997765 346777777874 599999999999 444421 1 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-------------CCC
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------------TTD 661 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------------~~~ 661 (771)
...+++.+.+..+++. ++.+++.|+||||||.+++.++.++|+.++++++.++......... ...
T Consensus 76 ~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (291)
T d1bn7a_ 76 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTAD 153 (291)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHHHTSTT
T ss_pred cchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHHHhhhh
Confidence 3456666666666665 3457899999999999999999999999999988765432110000 000
Q ss_pred CC------cchhhhhccCCCCCcCCCCCChhhHHHHh-----------------hc--------------CccccccCCC
Q 004149 662 IP------DWCYVESYGSKGKDSFTESPSVEDLTRFH-----------------SK--------------SPISHISKVK 704 (771)
Q Consensus 662 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------sp~~~~~~i~ 704 (771)
.. ...+...... ..............+. .. .....+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 230 (291)
T d1bn7a_ 154 VGRELIIDQNAFIEGVLP---KCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQSP 230 (291)
T ss_dssp HHHHHHTTSCHHHHTHHH---HTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCC
T ss_pred hHHHhhhhhhhhHHhhhh---hhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhcCC
Confidence 00 0000000000 0000000000000000 00 0112246789
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 705 ~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+|+|+++|++|..+|++.+..+.+.+.+ +++++++++||.+. .+...++.+.+.+||+.
T Consensus 231 ~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~~i~~~gH~~~-~e~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 231 VPKLLFWGTPGVLIPPAEAARLAESLPN----CKTVDIGPGLHYLQ-EDNPDLIGSEIARWLPG 289 (291)
T ss_dssp SCEEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCGG-GTCHHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHCCC----CEEEEECCCCCchH-HhCHHHHHHHHHHHHHh
Confidence 9999999999999999988888777643 78999999999765 34456788888888864
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.73 E-value=2e-17 Score=163.22 Aligned_cols=217 Identities=18% Similarity=0.163 Sum_probs=135.2
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|+++||.|+++|+||. |.+... .......++....+..+.... ....+
T Consensus 3 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~Dl~G~---G~S~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAAS---GTDLRK----IEELRTLYDYTLPLMELMESL-SADEK 72 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTTS---TTCCCC----GGGCCSHHHHHHHHHHHHHTS-CSSSC
T ss_pred CcEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEecCCCC---CCCCCC----CCCCcchHHHHHHHhhhhhcc-ccccc
Confidence 678999997665 45688899999999999999999994 443211 011123444444444444432 23467
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh---------hcCCCCCcchhhhh--ccCCC--C--------
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------VGTTDIPDWCYVES--YGSKG--K-------- 676 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------~~~~~~~~~~~~~~--~~~~~--~-------- 676 (771)
+.++|||+||.+++.++.++|++++.+|+.++....... .............. ..... .
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPK 152 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCHH
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccHH
Confidence 899999999999999999999999999988875421100 00000000000000 00000 0
Q ss_pred ---CcCCCCCChhhH--------------HHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004149 677 ---DSFTESPSVEDL--------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 677 ---~~~~~~~~~~~~--------------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
............ ..+...........+++|+++++|++|..+|++.++.+.+.+.. +++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~ 228 (258)
T d1xkla_ 153 FLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGV----TEA 228 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCC----SEE
T ss_pred HHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHCCC----CEE
Confidence 000000001110 01112222334556779999999999999999988888877643 688
Q ss_pred EEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 740 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++++++||.... +...++.+.|.+|+++|
T Consensus 229 ~~i~~~gH~~~~-e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 229 IEIKGADHMAML-CEPQKLCASLLEIAHKY 257 (258)
T ss_dssp EEETTCCSCHHH-HSHHHHHHHHHHHHHHC
T ss_pred EEECCCCCchHH-hCHHHHHHHHHHHHHhc
Confidence 999999997653 44568889999999886
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.72 E-value=1.4e-16 Score=160.33 Aligned_cols=249 Identities=14% Similarity=0.113 Sum_probs=160.6
Q ss_pred EeCCC--CCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 105 VPSPS--GSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 105 ~~SPd--G~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.+||| |++|||+++.+ +|+++ ++++.++++...... ..++|||||++|||........
T Consensus 5 ~~sPdi~G~~v~f~~~~d-----l~~~d~~~g~~~~Lt~~~~~~----------~~p~~SPDG~~iaf~~~~~~~~---- 65 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDD-----LWEHDLKSGSTRKIVSNLGVI----------NNARFFPDGRKIAIRVMRGSSL---- 65 (281)
T ss_dssp CEEEEEETTEEEEEETTE-----EEEEETTTCCEEEEECSSSEE----------EEEEECTTSSEEEEEEEESTTC----
T ss_pred ccCCCCCCCEEEEEeCCc-----EEEEECCCCCEEEEecCCCcc----------cCEEECCCCCEEEEEEeeCCCC----
Confidence 56899 99999997754 99999 778888887764444 5899999999999987543110
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-------CccceEEEecCCCCC
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-------LSVGQVVWAPLNEGL 254 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-------~~~~~~~wspDg~~~ 254 (771)
...+||++++.+++.++|+ ... .....+.|||||+.
T Consensus 66 ----------------------------------~~~~i~~~~~~~g~~~~lt--~~~~~~~~~~~~~~~~~~spdg~~- 108 (281)
T d1k32a2 66 ----------------------------------NTADLYFYNGENGEIKRIT--YFSGKSTGRRMFTDVAGFDPDGNL- 108 (281)
T ss_dssp ----------------------------------CEEEEEEEETTTTEEEECC--CCCEEEETTEECSEEEEECTTCCE-
T ss_pred ----------------------------------CceEEEEEEecCCceEEee--ecCCCccCccccccccccCCCCCE-
Confidence 2368999999999999994 322 23457899999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+|+...... .....++.++. +++..+..... ...+.|++||+.+++.
T Consensus 109 ---l~~~~~~~~~---------~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 156 (281)
T d1k32a2 109 ---IISTDAMQPF---------SSMTCLYRVEN-----------------DGINFVPLNLG---PATHILFADGRRVIGR 156 (281)
T ss_dssp ---EEEECTTSSS---------TTCCEEEEEEG-----------------GGTEEEECCSC---SCSEEEEETTEEEEEE
T ss_pred ---EEEEEccCCC---------ccceeeeeecC-----------------CCceeEEecCC---ccceeeecCCCeEEEe
Confidence 9987643321 12235667776 55555554433 3457788888888887
Q ss_pred ecCCCCCC-CCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 335 SAKSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 335 ~~~~~~~~-g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
........ .................. ........ .....+.|+++ .+++.....+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~----------~~~~~~~~~~~--~~~~~~~~~~~~ 214 (281)
T d1k32a2 157 NTFELPHWKGYRGGTRGKIWIEVNSGA----------FKKIVDMS----------THVSSPVIVGH--RIYFITDIDGFG 214 (281)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTE----------EEEEECCS----------SCCEEEEEETT--EEEEEECTTSSC
T ss_pred eccccceeeeeccCCcceeeeeccccc----------eeeccCCc----------cccceeeeecc--ccceeccccccc
Confidence 66542100 000000011111111111 00000000 01123345544 577777777888
Q ss_pred EEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 414 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
+||.+|+++++.++|+.... .....+|+||+.|+|... .+||++++.+++
T Consensus 215 ~l~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~ 264 (281)
T d1k32a2 215 QIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG-----GSIYIFNPDTEK 264 (281)
T ss_dssp EEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEET-----TEEEEECTTTCC
T ss_pred ceEEEeCCCCceEEeecCCC-cccccCcCCCCEEEEEeC-----CEEEEEECCCCC
Confidence 99999999999999987654 344679999999998764 369999887654
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=1.8e-17 Score=155.89 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=118.8
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
.||++||...+.....+...++.|+++||.|+++|++|.+. + ..++....++.+... ...++
T Consensus 3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~---~------------~~~~~~~~l~~~~~~---~~~~~ 64 (186)
T d1uxoa_ 3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ---P------------RLEDWLDTLSLYQHT---LHENT 64 (186)
T ss_dssp EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTS---C------------CHHHHHHHHHTTGGG---CCTTE
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCc---c------------hHHHHHHHHHHHHhc---cCCCc
Confidence 58999997655333335667889999999999999998332 1 245555555544433 45789
Q ss_pred EEEEcChhHHHHHHHHHhCCCce--eEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCc
Q 004149 619 TVVGGSHGGFLTTHLIGQAPDKF--VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a~~~p~~~--~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 696 (771)
+|+||||||.+++.++.+++... .+++..++..... ..+.....+ .... .+
T Consensus 65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~--------~~~~-----------~~ 117 (186)
T d1uxoa_ 65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSL--------PTLQMLDEF--------TQGS-----------FD 117 (186)
T ss_dssp EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCC--------TTCGGGGGG--------TCSC-----------CC
T ss_pred EEEEechhhHHHHHHHHhCCccceeeEEeecccccccc--------hhhhhhhhh--------hccc-----------cc
Confidence 99999999999999999988643 4444444432211 000000000 0000 01
Q ss_pred cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC--CChHHHHHHHHHHHHH
Q 004149 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKK 768 (771)
Q Consensus 697 ~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~wl~~ 768 (771)
.....++.+|+|++||++|++||+++++.+++.+. +++++++++||.+... ....+..+.+.+||.+
T Consensus 118 ~~~~~~~~~p~lvi~g~~D~~vp~~~~~~l~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 118 HQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQID-----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp HHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHTT-----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred ccccccCCCCEEEEecCCCCCCCHHHHHHHHHHcC-----CEEEEeCCCCCcCccccCcccHHHHHHHHHHHcC
Confidence 11122345799999999999999999999988772 6899999999976432 2334677788888763
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.72 E-value=1.1e-16 Score=160.51 Aligned_cols=216 Identities=17% Similarity=0.216 Sum_probs=127.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.+ ...|...+..|+++||.|+++|+||. |.+... ......+++.+.+..+++. ++.+
T Consensus 23 G~~ivllHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~---G~S~~~-----~~~~~~~~~~~dl~~~l~~--l~~~ 90 (277)
T d1brta_ 23 GQPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGF---GQSSQP-----TTGYDYDTFAADLNTVLET--LDLQ 90 (277)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC-----SSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeCCCC---Cccccc-----ccccchhhhhhhhhhhhhc--cCcc
Confidence 4679999997765 45688888899999999999999994 444211 1112344444444444443 2346
Q ss_pred eEEEEEcChhH-HHHHHHHHhCCCceeEEEecCCccchhhhhcCCCC---Ccch--------------hhhhccCC---C
Q 004149 617 KVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI---PDWC--------------YVESYGSK---G 675 (771)
Q Consensus 617 ri~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~---~~~~--------------~~~~~~~~---~ 675 (771)
++.|+|||||| .++..++..+|++++++|+.+++............ +... +...+... .
T Consensus 91 ~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (277)
T d1brta_ 91 DAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNL 170 (277)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTH
T ss_pred cccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhcccccccc
Confidence 89999999996 45556677789999999998765422111000000 0000 00000000 0
Q ss_pred CCcCCCCCChhhHH-------------HH-----hhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCE
Q 004149 676 KDSFTESPSVEDLT-------------RF-----HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 737 (771)
Q Consensus 676 ~~~~~~~~~~~~~~-------------~~-----~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 737 (771)
.............. .+ ...+....+.++++|+|+++|++|..++++...+.+... ..++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~---~~~~ 247 (277)
T d1brta_ 171 DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKA---LPSA 247 (277)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHH---CTTS
T ss_pred chhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcCHHHHHHHHHHh---CCCC
Confidence 00000000000000 00 011122346678999999999999999987654433322 2347
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 738 KVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++++++++||.+.. +...++.+.|.+||++
T Consensus 248 ~~~~i~~~gH~~~~-e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 248 EYVEVEGAPHGLLW-THAEEVNTALLAFLAK 277 (277)
T ss_dssp EEEEETTCCTTHHH-HTHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCchHH-hCHHHHHHHHHHHHCc
Confidence 89999999997653 4556788999999874
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.72 E-value=5.3e-18 Score=173.81 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=143.3
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|.++++.-.-++ ...|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+.. +....
T Consensus 29 ~~~~g~~~~y~~~G~~-----~~~p~llllHG~~~~--~~~~~~~~~~l~~~~~~vi~~Dl~G---~G~S~~---~~~~~ 95 (310)
T d1b6ga_ 29 PGYPGLRAHYLDEGNS-----DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDK---PVDEE 95 (310)
T ss_dssp TTCTTCEEEEEEEECT-----TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCE---ESCGG
T ss_pred cCCCCEEEEEEEecCC-----CCCCEEEEECCCCCc--hHHHHHHHHHhhccCceEEEeeecC---cccccc---ccccc
Confidence 3457888876655443 245899999997765 4567788899999999999999999 444421 11112
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-----hhcCCC---CCcc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVGTTD---IPDW 665 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----~~~~~~---~~~~ 665 (771)
....+++.+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|+.++..-... +..... ...+
T Consensus 96 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFT 173 (310)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHH
T ss_pred cccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCccCCCcccchhHHHHhhcchhhhh
Confidence 23456666666666654 2457899999999999999999999999999999877532110 000000 0000
Q ss_pred --hhhhhccCCC-----CCcCCCCCChhhHHHHh-------------------h-c----------CccccccCCCCcEE
Q 004149 666 --CYVESYGSKG-----KDSFTESPSVEDLTRFH-------------------S-K----------SPISHISKVKTPTI 708 (771)
Q Consensus 666 --~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------------------~-~----------sp~~~~~~i~~P~L 708 (771)
.......... ...............+. . . .......++++|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 253 (310)
T d1b6ga_ 174 AWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTF 253 (310)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred hhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhhhhHHhhcccCCCeE
Confidence 0000000000 00000000000000000 0 0 00012357889999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++|++|..++++....+.+.+... .+++.++++||.+. .+....+.+.|..|++.
T Consensus 254 ~i~G~~D~~~~~~~~~~~~~~~~~~---~~~~~i~~~GH~~~-~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 254 MAIGMKDKLLGPDVMYPMKALINGC---PEPLEIADAGHFVQ-EFGEQVAREALKHFAET 309 (310)
T ss_dssp EEEETTCSSSSHHHHHHHHHHSTTC---CCCEEETTCCSCGG-GGHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCC---ccEEEECCCcCchh-hhCHHHHHHHHHHHHhC
Confidence 9999999999988877777665442 36778999999654 44455666777778763
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.72 E-value=1.1e-17 Score=159.74 Aligned_cols=185 Identities=20% Similarity=0.192 Sum_probs=129.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH---
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--- 609 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--- 609 (771)
+.+..|+||++||++.. ...|...++.++ .++.|+.++.+...+ +.... .........+.+++...++.+..
T Consensus 13 ~~~~~P~vi~lHG~G~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T d2r8ba1 13 GVAGAPLFVLLHGTGGD--ENQFFDFGARLL-PQATILSPVGDVSEH-GAARF-FRRTGEGVYDMVDLERATGKMADFIK 87 (203)
T ss_dssp CCTTSCEEEEECCTTCC--HHHHHHHHHHHS-TTSEEEEECCSEEET-TEEES-SCBCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCeEEEeccccccc-ccccc-ccccCccccchhHHHHHHHHHHHHHH
Confidence 45668999999996654 334556666664 578899997653211 11110 00111122223343333333221
Q ss_pred --cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhh
Q 004149 610 --MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 610 --~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
...++.++++++|+|+||.+++.++..+|+.+.++++.++......
T Consensus 88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~-------------------------------- 135 (203)
T d2r8ba1 88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------------- 135 (203)
T ss_dssp HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC--------------------------------
T ss_pred HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc--------------------------------
Confidence 1226789999999999999999999999999999999888642100
Q ss_pred HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
........+|++++||++|++||+++++++++.|++.|+++++.++++ +|.+. .+.++.+.+||.
T Consensus 136 ---------~~~~~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~ 200 (203)
T d2r8ba1 136 ---------KISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLA 200 (203)
T ss_dssp ---------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHG
T ss_pred ---------ccccccccchhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHH
Confidence 001123357999999999999999999999999999999999999986 79975 356788999998
Q ss_pred HH
Q 004149 768 KY 769 (771)
Q Consensus 768 ~~ 769 (771)
+|
T Consensus 201 ~~ 202 (203)
T d2r8ba1 201 AY 202 (203)
T ss_dssp GG
T ss_pred hc
Confidence 75
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.70 E-value=2.1e-17 Score=163.22 Aligned_cols=215 Identities=16% Similarity=0.106 Sum_probs=130.1
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEE
Q 004149 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 619 (771)
.|++||.+++ ...|...+..|+++||.|+++|+||. |.+.... ......++..+.+..+.... ...+++.
T Consensus 5 ~vliHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G~---G~S~~~~----~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAAS---GVDPRQI----EEIGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTTS---TTCSCCG----GGCCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEcCCCC---CCCCCCC----CCCCCHHHHHHHhhhhhhhh-cccccee
Confidence 5889997765 45788899999999999999999994 4432110 11123455555554443332 2357899
Q ss_pred EEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh----------hcCCCCCcch---hhhh--------ccCCC-CC
Q 004149 620 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----------VGTTDIPDWC---YVES--------YGSKG-KD 677 (771)
Q Consensus 620 l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~----------~~~~~~~~~~---~~~~--------~~~~~-~~ 677 (771)
|+||||||.+++.++.++|++++++|+.++....... .......... .... ..... ..
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRE 154 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHH
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhh
Confidence 9999999999999999999999999988765321100 0000000000 0000 00000 00
Q ss_pred cCCCCCChhhHH--------------HHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 678 SFTESPSVEDLT--------------RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 678 ~~~~~~~~~~~~--------------~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
............ .............+++|+++++|++|..+|++..+.+.+.+. +.++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~ 230 (256)
T d3c70a1 155 NLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVYKVE 230 (256)
T ss_dssp HTSTTSCHHHHHHHHHHCCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEEECC
T ss_pred hhhhhcchhhHHHhhhhhhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCCHHHHHHHHHHCC----CCEEEEEC
Confidence 000000000000 000111122334457899999999999999888777766543 47899999
Q ss_pred CCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 744 NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++||... .+...++.+.+.+|+++|
T Consensus 231 ~agH~~~-~e~P~~~~~~l~~~~~~~ 255 (256)
T d3c70a1 231 GGDHKLQ-LTKTKEIAEILQEVADTY 255 (256)
T ss_dssp SCCSCHH-HHSHHHHHHHHHHHHHHC
T ss_pred CCCCchH-HhCHHHHHHHHHHHHHhc
Confidence 9999765 334567888888888775
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.70 E-value=1.4e-16 Score=161.09 Aligned_cols=228 Identities=16% Similarity=0.214 Sum_probs=133.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++++... + ..|+||++||.+.+ ...|...+..|++ +|.|+++|+||. |.+.... ........
T Consensus 16 ~~~~l~y~~~------G--~gp~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~---G~s~~~~-~~~~~~~~ 80 (293)
T d1ehya_ 16 PDVKIHYVRE------G--AGPTLLLLHGWPGF--WWEWSKVIGPLAE-HYDVIVPDLRGF---GDSEKPD-LNDLSKYS 80 (293)
T ss_dssp SSCEEEEEEE------E--CSSEEEEECCSSCC--GGGGHHHHHHHHT-TSEEEEECCTTS---TTSCCCC-TTCGGGGC
T ss_pred CCEEEEEEEE------C--CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCcc---cCCcccc-cccccccc
Confidence 4667765442 1 24789999997765 4578888888855 899999999994 4332211 11122234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh--hcCCCC-Ccch-------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--VGTTDI-PDWC------- 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~--~~~~~~-~~~~------- 666 (771)
.+++...+..+++. ++.+++.++||||||.+++.++.++|+++.++++.+|....... ...... ..+.
T Consensus 81 ~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (293)
T d1ehya_ 81 LDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQLD 158 (293)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHHTTCH
T ss_pred chhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccCccccchhhhhhhhhhhhhhhhhccc
Confidence 56666666666555 34578999999999999999999999999999998875421000 000000 0000
Q ss_pred ---------------hhhhccCCCCCcCCCCCChhhHH-----------------HHhh---cCc----cccccCCCCcE
Q 004149 667 ---------------YVESYGSKGKDSFTESPSVEDLT-----------------RFHS---KSP----ISHISKVKTPT 707 (771)
Q Consensus 667 ---------------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~---~sp----~~~~~~i~~P~ 707 (771)
+...+... .............. .+.. ... ......+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 237 (293)
T d1ehya_ 159 MAVEVVGSSREVCKKYFKHFFDH-WSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLPV 237 (293)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH-TSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBCSCE
T ss_pred hhhhhhccchhHHHHHHHHhhhh-cccccccccHHHHHhhhhccccchhhhhhhhhhhhccccchhhhhhhhhhccCCce
Confidence 00000000 00000000001100 0000 000 01124567899
Q ss_pred EEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 708 Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
|+++|++|..+|++...++.+.+ ..++++.+++++||.+.. +...++.+.|.+||
T Consensus 238 lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~-e~Pe~~~~~I~~Ff 292 (293)
T d1ehya_ 238 TMIWGLGDTCVPYAPLIEFVPKY---YSNYTMETIEDCGHFLMV-EKPEIAIDRIKTAF 292 (293)
T ss_dssp EEEEECCSSCCTTHHHHHHHHHH---BSSEEEEEETTCCSCHHH-HCHHHHHHHHHHHC
T ss_pred EEEEeCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCchHH-HCHHHHHHHHHHhh
Confidence 99999999999988766655544 345899999999997653 33445666666665
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.70 E-value=9.3e-17 Score=164.70 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=84.9
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
..+||.++++..+-.+ +.|.||++||++++.. .|... ..+...||.|+++|.|| +|.+... ....
T Consensus 17 ~~~dg~~i~y~~~G~~------~g~pvvllHG~~g~~~--~~~~~-~~~l~~~~~Vi~~D~rG---~G~S~~~---~~~~ 81 (313)
T d1azwa_ 17 KVDDRHTLYFEQCGNP------HGKPVVMLHGGPGGGC--NDKMR-RFHDPAKYRIVLFDQRG---SGRSTPH---ADLV 81 (313)
T ss_dssp ECSSSCEEEEEEEECT------TSEEEEEECSTTTTCC--CGGGG-GGSCTTTEEEEEECCTT---STTSBST---TCCT
T ss_pred EeCCCcEEEEEEecCC------CCCEEEEECCCCCCcc--chHHH-hHHhhcCCEEEEEeccc---cCCCCcc---cccc
Confidence 3456778877766432 3467899999876532 33322 23346799999999999 5555321 1222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
....+++.+.+..++++ ++.+++.|+||||||.+++.++.++|++++++++.++..
T Consensus 82 ~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 82 DNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp TCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred chhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 23456666666666665 345789999999999999999999999999999888754
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.70 E-value=2.5e-16 Score=165.78 Aligned_cols=252 Identities=12% Similarity=0.118 Sum_probs=157.6
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCC----CCCCCC------cchHHHHHHHHCCcEEEEECCCCCCCCChhh
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP----HSVSLS------SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~----~~~~~~------~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~ 584 (771)
-.||.+|.+.+|+|+ ..++.|+||+.|+-. ...... ......+.|+++||+|+.+|+||.++++..+
T Consensus 35 mrDG~~L~~~v~~P~---~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~ 111 (385)
T d2b9va2 35 MRDGVKLYTVIVIPK---NARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDY 111 (385)
T ss_dssp CTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred CCCCCEEEEEEEEcC---CCCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEEcCCcccCCCCce
Confidence 457899999999998 467899999987521 000000 1223457899999999999999988887665
Q ss_pred hhcC-----CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC
Q 004149 585 LQSL-----PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659 (771)
Q Consensus 585 ~~~~-----~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~ 659 (771)
.... ....+..+.+|..++++|+.+++..+.+||+++|+|+||++++.+|...|+.+++++..++..+.......
T Consensus 112 ~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~~ 191 (385)
T d2b9va2 112 VMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDW 191 (385)
T ss_dssp CTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTTBSSS
T ss_pred eeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEecccccccccccc
Confidence 4322 22344567899999999999997678899999999999999999999989999999988877664321100
Q ss_pred C--CCC-----cchhhhhccC-CCCCcCCCCCC-h------------------------h-------hHHHHhhcCcccc
Q 004149 660 T--DIP-----DWCYVESYGS-KGKDSFTESPS-V------------------------E-------DLTRFHSKSPISH 699 (771)
Q Consensus 660 ~--~~~-----~~~~~~~~~~-~~~~~~~~~~~-~------------------------~-------~~~~~~~~sp~~~ 699 (771)
. ... .|........ ........... . . ....+...++...
T Consensus 192 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~~ 271 (385)
T d2b9va2 192 FHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFWQGQALDKI 271 (385)
T ss_dssp EETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHHHTTCHHHH
T ss_pred cCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhccCcccchhhhhcChhHH
Confidence 0 000 0000000000 00000000000 0 0 0012223344333
Q ss_pred --ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC--CCEEEEEeCCCCccCCC------------CC-ChHHHHHHH
Q 004149 700 --ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--VETKVIVFPNDVHGIER------------PQ-SDFESFLNI 762 (771)
Q Consensus 700 --~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~------------~~-~~~~~~~~i 762 (771)
..++.+|+|++.|..|... ...+.+.++.++... .+.++++-|. +|+... .+ ......+.+
T Consensus 272 ~~~~~i~vP~l~~~g~~dd~~-~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 349 (385)
T d2b9va2 272 LAQRKPTVPMLWEQGLWDQED-MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYRRDVF 349 (385)
T ss_dssp HHHHCCCSCEEEEEETTCSSC-SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHTH
T ss_pred HhhccccCceEEEEecccCCc-ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccccccccccCcccchhhHHHHH
Confidence 3356789999999887654 355667777777654 4678887765 564221 11 122344567
Q ss_pred HHHHHHHhC
Q 004149 763 GLWFKKYCK 771 (771)
Q Consensus 763 ~~wl~~~l~ 771 (771)
++||++|||
T Consensus 350 l~WFD~~LK 358 (385)
T d2b9va2 350 RPFFDEYLK 358 (385)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 899999997
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.9e-16 Score=166.21 Aligned_cols=297 Identities=11% Similarity=0.031 Sum_probs=175.4
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcc
Q 004149 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTV 145 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~ 145 (771)
+.++++++..... ...++...+. .-......|||||++|+|..+... ....+++.+ ..+..+.+..... .
T Consensus 37 g~i~~~~~~~~~~-~~l~~~~~~~--~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~-~ 112 (465)
T d1xfda1 37 GTVRLWNVETNTS-TVLIEGKKIE--SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-S 112 (465)
T ss_dssp SCEEEBCGGGCCC-EEEECTTTTT--TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-C
T ss_pred CcEEEEECCCCCE-EEEEcCcccc--ccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC-C
Confidence 3577766643322 1222222222 124567889999999999876432 234566666 5555555543321 1
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004149 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
.+ .+..+.|||||++|||+. ..+||+.+.
T Consensus 113 ~~------~l~~~~wSPDG~~iafv~---------------------------------------------~~nl~~~~~ 141 (465)
T d1xfda1 113 NA------KLQYAGWGPKGQQLIFIF---------------------------------------------ENNIYYCAH 141 (465)
T ss_dssp SC------CCSBCCBCSSTTCEEEEE---------------------------------------------TTEEEEESS
T ss_pred cc------ccceeeeccCCceEEEEe---------------------------------------------cceEEEEec
Confidence 11 124689999999999983 357888888
Q ss_pred cCCceeeccCCCCCC------------------ccceEEEecCCCCCccEEEEEeecCcce-e--------------eee
Q 004149 226 NSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVFVGWSSETR-K--------------LGI 272 (771)
Q Consensus 226 ~~~~~~~l~~~~~~~------------------~~~~~~wspDg~~~~~~l~~~~~~~~~~-~--------------~g~ 272 (771)
.++...+++ ..+.. ....+.|||||++ |+|.......- . ...
T Consensus 142 ~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~----iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~ 216 (465)
T d1xfda1 142 VGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----LAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (465)
T ss_dssp SSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----EEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred CCCceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCe----EEEEEecccccceeecccccccccceeeee
Confidence 888777773 11110 1235679999999 99986432210 0 001
Q ss_pred eee----ccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC--C-----CccccceeecCCCCEEEEEecCCCCC
Q 004149 273 KYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE--S-----ISSAFFPRFSPDGKFLVFLSAKSSVD 341 (771)
Q Consensus 273 ~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~--~-----~~~~~~p~~SpDG~~l~f~~~~~~~~ 341 (771)
.|. .+....|+++|+ +++..+.+.. . ......+.|+||++.+++..++.
T Consensus 217 ~Yp~~G~~np~~~l~v~d~-----------------~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~--- 276 (465)
T d1xfda1 217 HYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA--- 276 (465)
T ss_dssp ECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---
T ss_pred eccccCCCCCceeEEEEec-----------------CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc---
Confidence 111 122236888887 4444332221 1 12346689999998666666654
Q ss_pred CCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe--eeCCeeEEEEEE
Q 004149 342 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS--IWGSSQVIISVN 419 (771)
Q Consensus 342 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~--~~~~~~~l~~~d 419 (771)
.....|+++|..+++.+.+..... +.. .......+.|++||+.++|.. ...+..++|.+.
T Consensus 277 ----q~~~~i~~~d~~tg~~~~~~~e~~-----------~~w---v~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~ 338 (465)
T d1xfda1 277 ----QNVSILTLCDATTGVCTKKHEDES-----------EAW---LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT 338 (465)
T ss_dssp ----SCEEEEEEEETTTCCEEEEEEEEC-----------SSC---CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred ----cccceEEEEcCCCCcEEEEEEEcC-----------Cce---EeccCCceeEccCCCeeEEEEeeeecccCceEEEE
Confidence 345679999998887644322210 100 001124678999999877653 345666777764
Q ss_pred C-------CCCcEEEecCCCCCcee-eEEeecCCEEEEEEeCCCCCC--eEEEEEecc
Q 004149 420 V-------SSGELLRITPAESNFSW-SLLTLDGDNIIAVSSSPVDVP--QVKYGYFVD 467 (771)
Q Consensus 420 ~-------~tg~~~~l~~~~~~~~~-~~~s~d~~~l~~~~s~~~~p~--~l~~~~~~~ 467 (771)
+ .++..++||.+...+.. ..++.+++.|+|++.. ..|. .||.+++..
T Consensus 339 ~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~-~~p~~~hly~v~l~g 395 (465)
T d1xfda1 339 VSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-DLPRRRQLYSANTVG 395 (465)
T ss_dssp EECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-SCTTCCEEEEECSST
T ss_pred eccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC-CCCCceEEEEEECCC
Confidence 3 34556788877654433 3578899999998853 3444 467766654
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.69 E-value=5.4e-16 Score=153.69 Aligned_cols=190 Identities=11% Similarity=-0.061 Sum_probs=126.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC----cch-HHHHHHHHCC----cEEEEECCCCCCCCChhhhhc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS----SYS-KSLAFLSSVG----YSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~----~~~-~~~~~la~~G----~~V~~~d~rG~~~~g~~~~~~ 587 (771)
+|.++++++|.|+++++++++|+||++||++...... ... .....+...+ +.+...........
T Consensus 32 ~g~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 104 (255)
T d1jjfa_ 32 TNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPG------- 104 (255)
T ss_dssp TTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTT-------
T ss_pred CCCEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeeccccccccc-------
Confidence 5788999999999998889999999999976543211 111 1223333333 44444444332111
Q ss_pred CCCCccc-cchhhHHHHHHHHHHc--CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCc
Q 004149 588 LPGKVGS-QDVNDVLTAIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 664 (771)
Q Consensus 588 ~~~~~~~-~~~~D~~~~i~~l~~~--~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~ 664 (771)
...... .....+.+.+.++.++ ..+++++++++|+|+||++++.++.++|++|+++++.+|..+.....
T Consensus 105 -~~~~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~~~~~~------- 176 (255)
T d1jjfa_ 105 -IADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPNE------- 176 (255)
T ss_dssp -CSCHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCCHH-------
T ss_pred -ccccccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcCCcccc-------
Confidence 000001 1112233344455443 33788999999999999999999999999999999988865321100
Q ss_pred chhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 665 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.....+.........|++|.||++|..++ ..++++++|+++|+++++..+++
T Consensus 177 --------------------------~~~~~~~~~~~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~~~~~~~ 228 (255)
T d1jjfa_ 177 --------------------------RLFPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQG 228 (255)
T ss_dssp --------------------------HHCTTTTHHHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEETT
T ss_pred --------------------------cccccHHHHhhccCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEEEEEECC
Confidence 00001111222345799999999999985 56789999999999999999999
Q ss_pred CCccC
Q 004149 745 DVHGI 749 (771)
Q Consensus 745 ~~H~~ 749 (771)
++|.+
T Consensus 229 ggH~~ 233 (255)
T d1jjfa_ 229 GGHDF 233 (255)
T ss_dssp CCSSH
T ss_pred CCcCH
Confidence 99965
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.69 E-value=1.5e-15 Score=165.25 Aligned_cols=304 Identities=13% Similarity=0.063 Sum_probs=175.8
Q ss_pred EEEEEEeecCCCCcccee-ecCCccccccceEEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcc
Q 004149 73 FMLSTVISKENENSVTFQ-WAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTV 145 (771)
Q Consensus 73 ~~~~~~~~~~~~~~~~lt-~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~ 145 (771)
.++++++.+. +..++. ...|......+..++|||||++|||.++... ....+++.+ .+++..+++..+...
T Consensus 37 ~~~~~~~~t~--~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~ 114 (470)
T d2bgra1 37 NILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNT 114 (470)
T ss_dssp CEEEEETTTC--CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTE
T ss_pred cEEEEECCCC--CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccc
Confidence 4667665333 333332 2233333345789999999999999876321 123455555 455444333333333
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004149 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
..++|||||++|||+. ...||++++
T Consensus 115 ----------~~~~~SPDG~~ia~~~---------------------------------------------~~~l~~~~~ 139 (470)
T d2bgra1 115 ----------QWVTWSPVGHKLAYVW---------------------------------------------NNDIYVKIE 139 (470)
T ss_dssp ----------EEEEECSSTTCEEEEE---------------------------------------------TTEEEEESS
T ss_pred ----------cccccccCcceeeEee---------------------------------------------cccceEEEC
Confidence 5899999999999973 357899998
Q ss_pred cCCceeeccCCCC-----------------CCccceEEEecCCCCCccEEEEEeecCccee-----------------ee
Q 004149 226 NSGEVQAVKGIPK-----------------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-----------------LG 271 (771)
Q Consensus 226 ~~~~~~~l~~~~~-----------------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~-----------------~g 271 (771)
.+++..+++.... ......+.|||||+. |+|.......-+ ..
T Consensus 140 ~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~----ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (470)
T d2bgra1 140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (470)
T ss_dssp TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred CCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCc----cceeEecCCcCceEEEEeeccCCCCCCeeee
Confidence 8888777631000 012345789999999 999865332100 00
Q ss_pred eee----eccCCceeEEEecccccchhhhhhhhcCCCCCCcceec------------CCCCccccceeecCCCCEEEEEe
Q 004149 272 IKY----CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------------TESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 272 ~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l------------t~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
..+ ..+....++++++ .++....+ .........+.|+++++.+++..
T Consensus 216 ~~~~~~g~~~~~~~~~v~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 278 (470)
T d2bgra1 216 VPYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL 278 (470)
T ss_dssp EECCBTTSCCCEEEEEEEEG-----------------GGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred eccccccccCCcceEEEEEC-----------------CCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEe
Confidence 011 1112235666776 33322211 11223356789999998777666
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE-EEEEeeeCCeeE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT-MLLSSIWGSSQV 414 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~ 414 (771)
++.. ......++.+|..++....+......... .... +.......+.|+++++. +++.+..++..+
T Consensus 279 ~r~~-----~~~~~~~~~~d~~tg~~~~~~~~~~~~~~------~~~~--i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ 345 (470)
T d2bgra1 279 RRIQ-----NYSVMDICDYDESSGRWNCLVARQHIEMS------TTGW--VGRFRPSEPHFTLDGNSFYKIISNEEGYRH 345 (470)
T ss_dssp ESST-----TEEEEEEEEEETTTTEEEECGGGCEEEEC------SSSC--SSSSSCCCCEECTTSSEEEEEEECTTSCEE
T ss_pred eccC-----CceEEEEEEecCCCCcEEEEEEEeeeeee------ccce--eecccCCCceeeecCCCcEEEEeccCcCce
Confidence 5541 12234566677666655443322111000 0000 00001234566666654 556677788899
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC-CCC--eEEEEEeccc
Q 004149 415 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV-DVP--QVKYGYFVDK 468 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~-~p~--~l~~~~~~~~ 468 (771)
||.++.+++..++++.+...+. ..++.+++.++|++.... .|. .||.+++..+
T Consensus 346 ly~~~~~g~~~~~lt~g~~~v~-~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~ 401 (470)
T d2bgra1 346 ICYFQIDKKDCTFITKGTWEVI-GIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDY 401 (470)
T ss_dssp EEEEETTCSCCEESCCSSSCEE-EEEEECSSEEEEEESCGGGCTTCBEEEEEETTCT
T ss_pred eEEEeccCCceeeeccCCeeEE-EEEEECCCEEEEEEecCCCCcceEEEEEEECCCC
Confidence 9999999999999997765443 357888999999876543 343 4888776543
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=2.1e-17 Score=163.94 Aligned_cols=209 Identities=18% Similarity=0.195 Sum_probs=127.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|+ .||.|+++|+|| +|.+. ......+.|+.+ .+... ..+
T Consensus 11 ~~~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~------~~~~~~~~d~~~---~~~~~---~~~ 72 (256)
T d1m33a_ 11 NVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPG---FGRSR------GFGALSLADMAE---AVLQQ---APD 72 (256)
T ss_dssp SSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTT---STTCC------SCCCCCHHHHHH---HHHTT---SCS
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEeCCC---CCCcc------cccccccccccc---ccccc---ccc
Confidence 4678899997654 446777888886 589999999999 55442 112223444433 33333 246
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcch--------------hhhhc-cCCCCCc---
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--------------YVESY-GSKGKDS--- 678 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~--- 678 (771)
++.++||||||.+++.++.++|+.++++++.++................. ....+ .......
T Consensus 73 ~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
T d1m33a_ 73 KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETA 152 (256)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTH
T ss_pred ceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccch
Confidence 89999999999999999999999999988876532211000000000000 00000 0000000
Q ss_pred ------------CCCCCChh----hHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 679 ------------FTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 679 ------------~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
........ ....+...+....++++++|+|+++|++|..+|++.+..+.+.+. +.++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~~~----~~~~~~i 228 (256)
T d1m33a_ 153 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIF 228 (256)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCT----TCEEEEE
T ss_pred hhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHHCC----CCEEEEE
Confidence 00000000 011122233345667899999999999999999888777655443 4789999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 743 PNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++||.+. .+...++.+.|.+|+++
T Consensus 229 ~~~gH~~~-~e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 229 AKAAHAPF-ISHPAEFCHLLVALKQR 253 (256)
T ss_dssp TTCCSCHH-HHSHHHHHHHHHHHHTT
T ss_pred CCCCCchH-HHCHHHHHHHHHHHHHH
Confidence 99999755 34466888889998864
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=7.1e-17 Score=161.23 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=135.8
Q ss_pred cccCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC-
Q 004149 513 LTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG- 590 (771)
Q Consensus 513 ~~~~~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~- 590 (771)
+.+.+| .++.+++++|.++++.+++|+|+++||++...... .....+..+.+|+.|+++++++...++...+.....
T Consensus 18 ~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~-~~~~~~~~~~~~~~vV~v~~~~~~~~~~~~r~~d~~~ 96 (265)
T d2gzsa1 18 FDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLD-DELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTP 96 (265)
T ss_dssp EECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCC-HHHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTCC
T ss_pred EEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHH-HHHHHHHHhcCCCeEEEecCCCCCcCccccccccccc
Confidence 334454 57999999999998889999999999965332111 112233446789999999999877655432211000
Q ss_pred ----------------Cccc-cchh--hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 591 ----------------KVGS-QDVN--DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 591 ----------------~~~~-~~~~--D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
..+. .... .....+.++.++..+|+++++|+|+|+||++++.++.+ ++.|.++++.+|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~~~a~s~~~ 175 (265)
T d2gzsa1 97 AAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPSL 175 (265)
T ss_dssp GGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGGG
T ss_pred ccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCEEEEECCcc
Confidence 0000 0111 11234455656666889999999999999999987775 56788888888764
Q ss_pred chhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCC--------CCccCcHHH
Q 004149 652 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ--------DLRVPVSNG 723 (771)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~--------D~~vp~~~~ 723 (771)
.+. ....+...++.........|+++.+|+. |..+++.++
T Consensus 176 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~ 223 (265)
T d2gzsa1 176 GRG--------------------------------YDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKI 223 (265)
T ss_dssp STT--------------------------------HHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHH
T ss_pred ccc--------------------------------chhhhhccccccccccCCCcEEEEcCCcccccccccccchhHHHH
Confidence 211 1112222233344455567888888876 667788999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
++++++|+++|+++++.+||+++|+.
T Consensus 224 ~~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 224 HTTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHHHCCCCEEEEEcCCCCcch
Confidence 99999999999999999999999963
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.67 E-value=5.7e-17 Score=162.86 Aligned_cols=214 Identities=17% Similarity=0.274 Sum_probs=125.0
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.+ ...|...+..|.+.||.|+++|+||. |.+... .....++++...+..+++. ++.+
T Consensus 23 g~~illlHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~---G~S~~~-----~~~~~~~~~~~di~~~i~~--l~~~ 90 (279)
T d1hkha_ 23 GQPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRGF---GGSSKV-----NTGYDYDTFAADLHTVLET--LDLR 90 (279)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTS---TTSCCC-----SSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEechhh---CCcccc-----ccccchhhhhhhhhhhhhh--cCcC
Confidence 4779999997765 45678888888899999999999994 443211 1122345544444444443 2456
Q ss_pred eEEEEEcChhH-HHHHHHHHhCCCceeEEEecCCccchhhhhcCC--CCCc----------------ch--hhhhccCCC
Q 004149 617 KVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--DIPD----------------WC--YVESYGSKG 675 (771)
Q Consensus 617 ri~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~--~~~~----------------~~--~~~~~~~~~ 675 (771)
++.|+|||||| .++..++..+|+++.++++.++........... .... +. ....+.. .
T Consensus 91 ~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 169 (279)
T d1hkha_ 91 DVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYN-L 169 (279)
T ss_dssp SEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHT-H
T ss_pred ccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcc-c
Confidence 89999999996 556666777899999999887643211100000 0000 00 0000000 0
Q ss_pred CCcCCCCCChhhH----HHHhhc-----------------CccccccCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhC
Q 004149 676 KDSFTESPSVEDL----TRFHSK-----------------SPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK 733 (771)
Q Consensus 676 ~~~~~~~~~~~~~----~~~~~~-----------------sp~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~ 733 (771)
............. ...... +....+..+++|+|+++|++|..+|.+. .+.+.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~p-- 247 (279)
T d1hkha_ 170 DENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP-- 247 (279)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT--
T ss_pred chhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccCHHHHHHHHHHhCC--
Confidence 0000000000000 000000 0112345568999999999999998754 344444433
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++++++++++||.+.. +...++.+.|.+||++
T Consensus 248 --~~~~~~i~~~gH~~~~-e~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 248 --EADYVEVEGAPHGLLW-THADEVNAALKTFLAK 279 (279)
T ss_dssp --TSEEEEETTCCTTHHH-HTHHHHHHHHHHHHHC
T ss_pred --CCEEEEECCCCCchHH-hCHHHHHHHHHHHHCc
Confidence 3688999999997653 3456788899999874
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.66 E-value=1.2e-15 Score=146.96 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=123.7
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCC-----CCC-ChhhhhcCCC-CccccchhhHH---H
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGS-----LGF-GEEALQSLPG-KVGSQDVNDVL---T 602 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~V~~~d~rG~-----~~~-g~~~~~~~~~-~~~~~~~~D~~---~ 602 (771)
...++||++||.+.+ ...+...+..|.+. ++.+++++-+.. +++ +..|...... .......+++. .
T Consensus 12 ~~~~~Vi~lHG~G~~--~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (218)
T d1auoa_ 12 PADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCC--hhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHH
Confidence 356799999996554 34566677777554 456666653210 001 1112111000 11112223332 2
Q ss_pred HHHHHH---HcCCCCCCeEEEEEcChhHHHHHHHHHh-CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCc
Q 004149 603 AIDHVI---DMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 678 (771)
Q Consensus 603 ~i~~l~---~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (771)
.+..++ .+..+|++|++++|+|+||.+++.++.. .+..++++++.++..... ..
T Consensus 90 ~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~-----------------~~----- 147 (218)
T d1auoa_ 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF-----------------GD----- 147 (218)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC-----------------CT-----
T ss_pred HHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccc-----------------cc-----
Confidence 233322 2345899999999999999999988754 466789999887743110 00
Q ss_pred CCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHH
Q 004149 679 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 758 (771)
Q Consensus 679 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 758 (771)
... ......++|+|++||++|.+||++.++++++.|++.|.++++..|+ .+|.+. .+.
T Consensus 148 ---~~~-------------~~~~~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~ 205 (218)
T d1auoa_ 148 ---ELE-------------LSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQE 205 (218)
T ss_dssp ---TCC-------------CCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHH
T ss_pred ---ccc-------------cchhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHH
Confidence 000 0001125799999999999999999999999999999999999997 689875 466
Q ss_pred HHHHHHHHHHHhC
Q 004149 759 FLNIGLWFKKYCK 771 (771)
Q Consensus 759 ~~~i~~wl~~~l~ 771 (771)
+..+.+||.+.|+
T Consensus 206 ~~~i~~wl~~~lg 218 (218)
T d1auoa_ 206 IHDIGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 8899999999874
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=2.7e-16 Score=158.98 Aligned_cols=242 Identities=15% Similarity=0.120 Sum_probs=152.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC-c
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK-V 592 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~-~ 592 (771)
.|.++...++.| .+++|+|+++||++.......|.. ..+.+.+.|+.|++++..+...++.......... .
T Consensus 19 ~~r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
T d1sfra_ 19 MGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGC 93 (288)
T ss_dssp TTEEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCBCSSCEEETTEE
T ss_pred CCcEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCCCccccCcccccccc
Confidence 466777666655 468999999999665433333332 4567788999999999877544433221111000 0
Q ss_pred cccchh--hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 593 GSQDVN--DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 593 ~~~~~~--D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.....+ -+.+.+.+|.++..+|++|++|+|+|+||++|+.++.++|++|+++++.+|.++.......... ......
T Consensus 94 ~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~~~~~~~--~~~~~~ 171 (288)
T d1sfra_ 94 QTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLI--GLAMGD 171 (288)
T ss_dssp ECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHH--HHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCcccccccccchhh--hhhhhh
Confidence 011122 2446677888887799999999999999999999999999999999999998764321100000 000000
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccC---CCCcEEEEeeCCCCccCc--------------HHHHHHHHHHHhC
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISK---VKTPTIFLLGAQDLRVPV--------------SNGLQYARALREK 733 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i~~P~Lii~G~~D~~vp~--------------~~~~~~~~~l~~~ 733 (771)
........+.+. .+...+...+|...+.+ -+.++++.+|..|..++. .+++++.++|++.
T Consensus 172 ~~~~~~~~~~g~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~~~l~~~l~~~ 248 (288)
T d1sfra_ 172 AGGYKASDMWGP---KEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAG 248 (288)
T ss_dssp TTSCCHHHHHCS---TTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHhhhcCC---cchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHC
Confidence 000000000000 11123445566555433 246899999999987764 5678899999999
Q ss_pred CCCEEEEEeCCC-CccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 734 GVETKVIVFPND-VHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|+++.+..+++. +|.+. .....+.+.+.||.+.|.
T Consensus 249 g~~~~~~~~~~~G~H~w~---~w~~~l~~~l~~l~~alg 284 (288)
T d1sfra_ 249 GGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALG 284 (288)
T ss_dssp TCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHT
T ss_pred CCCeEEEEECCCCccChh---HHHHHHHHHHHHHHHhcC
Confidence 999999988865 59753 123445566777777663
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.66 E-value=5.5e-17 Score=159.89 Aligned_cols=214 Identities=11% Similarity=0.038 Sum_probs=133.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCC-
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGK- 591 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~V~~~d~rG~~~~g~~~~~~~~~~- 591 (771)
.|.+++.++|.|++++ .+++|+||++||+++.... .....+..+.++| +.++.++... +..........
T Consensus 25 lg~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~-~~~~~l~~l~~~~~~~~~i~v~~~~~~----~~~~~~~~~~~~ 98 (246)
T d3c8da2 25 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLIDAID----TTHRAHELPCNA 98 (246)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEECCCS----HHHHHHHSSSCH
T ss_pred CCCEEEEEEEECCCCC-CCCCCEEEEeCCcchhccC-cHHHHHHHHHHhCCCCceEEeeccccc----ccccccccCccH
Confidence 4678899999999875 4679999999997643322 3344566666666 3455554322 11111111111
Q ss_pred -ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 592 -VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 592 -~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
+.....+++...++... ...+|+++++++|+|+||+++++++.++|++|+++++.+|..++.....
T Consensus 99 ~~~~~~~~el~~~v~~~~-~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~~------------ 165 (246)
T d3c8da2 99 DFWLAVQQELLPLVKVIA-PFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGG------------ 165 (246)
T ss_dssp HHHHHHHHTHHHHHHHHS-CCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTTS------------
T ss_pred HHHHHHHHHhhhHHHHhc-ccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCCc------------
Confidence 00111223333222211 2336889999999999999999999999999999999999764321100
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
.....+...++.....+...|+++.+|+.|..+ ..++++|+++|+++|+++++.++++ ||.+.
T Consensus 166 ---------------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~G-gH~~~ 228 (246)
T d3c8da2 166 ---------------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG-GHDAL 228 (246)
T ss_dssp ---------------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-CSCHH
T ss_pred ---------------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeCC-CCChH
Confidence 001122223345566677889999999999877 4788999999999999999999997 79653
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 004149 751 RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 751 ~~~~~~~~~~~i~~wl~~~ 769 (771)
.....+...+.||-+.
T Consensus 229 ---~W~~~l~~~l~~l~~~ 244 (246)
T d3c8da2 229 ---CWRGGLMQGLIDLWQP 244 (246)
T ss_dssp ---HHHHHHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHHHHHh
Confidence 2233444455555443
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.65 E-value=5.2e-16 Score=157.89 Aligned_cols=231 Identities=15% Similarity=0.193 Sum_probs=137.8
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+||.+|++..+-++ ..|.||++||++.+. ..|......| .+||.|+++|+||. |.+... .....
T Consensus 18 ~~dG~~i~y~~~G~~------~g~pvvllHG~~~~~--~~w~~~~~~l-~~~~~vi~~D~rG~---G~S~~~---~~~~~ 82 (313)
T d1wm1a_ 18 TGDGHRIYWELSGNP------NGKPAVFIHGGPGGG--ISPHHRQLFD-PERYKVLLFDQRGC---GRSRPH---ASLDN 82 (313)
T ss_dssp CSSSCEEEEEEEECT------TSEEEEEECCTTTCC--CCGGGGGGSC-TTTEEEEEECCTTS---TTCBST---TCCTT
T ss_pred eCCCcEEEEEEecCC------CCCeEEEECCCCCcc--cchHHHHHHh-hcCCEEEEEeCCCc---cccccc---ccccc
Confidence 457889987776543 236789999987663 4565555444 56999999999994 444221 11122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh------------------
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM------------------ 656 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~------------------ 656 (771)
....++.+.+..+.+. .+..++.++|||+||.++..++..+|++++.+++.++.......
T Consensus 83 ~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (313)
T d1wm1a_ 83 NTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWE 160 (313)
T ss_dssp CSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTSSGGGTSHHHHH
T ss_pred cchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeecccccccccccccccccccchhhhhhhh
Confidence 2344555555555554 34578999999999999999999999999999887765432100
Q ss_pred --hcCCCCCc---ch---hhhhcc----------------CCCCCcCCCCCChh-----hHH--------HHhhc-----
Q 004149 657 --VGTTDIPD---WC---YVESYG----------------SKGKDSFTESPSVE-----DLT--------RFHSK----- 694 (771)
Q Consensus 657 --~~~~~~~~---~~---~~~~~~----------------~~~~~~~~~~~~~~-----~~~--------~~~~~----- 694 (771)
........ +. ...... .............. ... .....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (313)
T d1wm1a_ 161 RVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIENHYFTHLGFLE 240 (313)
T ss_dssp HHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHHHHHHHTGGGCS
T ss_pred hhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhHHhhhhhhhhhhhhhhcccc
Confidence 00000000 00 000000 00000000000000 000 00000
Q ss_pred ----CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 695 ----SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 695 ----sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
........+++|+|+++|++|.++|++.++.+.+.+.+ +++++++++||.+.. .+...++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~Pvlii~G~~D~~~p~~~~~~l~~~~p~----a~~~~i~~aGH~~~e----P~~~~~lv~a~~~f~ 312 (313)
T d1wm1a_ 241 SDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPE----AELHIVEGAGHSYDE----PGILHQLMIATDRFA 312 (313)
T ss_dssp STTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCTT----SEEEEETTCCSSTTS----HHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhCCCCEEEEEECCCCccCHHHHHHHHHHCCC----CEEEEECCCCCCcCC----chHHHHHHHHHHHhc
Confidence 00122345789999999999999999999988887754 789999999996532 355667777777764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=2.1e-15 Score=157.08 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=131.0
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
.+||+||+.++.++++ .....+..++|||||+. |++++...+ ..|+++|+
T Consensus 24 g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~----l~~~~~~~g-------------~~v~v~d~---------- 73 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKV----AFIHGTREG-------------DFLGIYDY---------- 73 (360)
T ss_dssp TEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEE----EEEEEETTE-------------EEEEEEET----------
T ss_pred CeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCE----EEEEEcCCC-------------CEEEEEEC----------
Confidence 5899999999999887 24456889999999999 999874322 26889998
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004149 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
.+++.+++..+...+...+|||||++|++...+. .++++++.++....+....
T Consensus 74 -------~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--------- 126 (360)
T d1k32a3 74 -------RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF-----------EIMTVDLETGKPTVIERSR--------- 126 (360)
T ss_dssp -------TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS-----------EEEEEETTTCCEEEEEECS---------
T ss_pred -------CCCcEEEeeCCCceEEeeeecccccccceecccc-----------ccccccccccceeeeeecc---------
Confidence 8888999998888899999999999999887653 5888998776643221111
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004149 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~ 450 (771)
......++|+|||++|++..... ....++.+++.+++...++..........+++||+.|++.
T Consensus 127 ----------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 127 ----------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp ----------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred ----------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEE
Confidence 01345788999999998876532 2446888899999998888776666667899999999887
Q ss_pred EeC
Q 004149 451 SSS 453 (771)
Q Consensus 451 ~s~ 453 (771)
...
T Consensus 197 s~~ 199 (360)
T d1k32a3 197 SYR 199 (360)
T ss_dssp ESC
T ss_pred eCC
Confidence 643
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.59 E-value=1.7e-15 Score=149.58 Aligned_cols=212 Identities=15% Similarity=0.156 Sum_probs=120.2
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
+.+.|+||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+..... . .......+...+......
T Consensus 13 ~~~~P~ivllHG~~~~--~~~~~~~~~~L~~~g~~vi~~Dl~G---~G~s~~~~~---~---~~~~~~~~~~~~~~~~~~ 81 (264)
T d1r3da_ 13 TARTPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPG---HGTNPERHC---D---NFAEAVEMIEQTVQAHVT 81 (264)
T ss_dssp BTTBCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTT---CSSCC-------------CHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---ccccccccc---c---ccchhhhhhhhccccccc
Confidence 3456899999997765 4578889999999999999999999 444321111 1 111222222222223234
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh------h----------h-cCCCCCcchhhhhccCCCC
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------M----------V-GTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------~----------~-~~~~~~~~~~~~~~~~~~~ 676 (771)
..+++.++|||+||.+++.++.++|+.+..++...+...... . . ................
T Consensus 82 ~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 158 (264)
T d1r3da_ 82 SEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQ--- 158 (264)
T ss_dssp TTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTT---
T ss_pred ccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---
Confidence 567899999999999999999999988776665432211000 0 0 0000000000000000
Q ss_pred CcCCCCCChhh---------------HHHH-h------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 677 DSFTESPSVED---------------LTRF-H------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 677 ~~~~~~~~~~~---------------~~~~-~------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
........... .... . .......+..+++|+++++|++|..+ ..+.+. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~-----~~~~~~-~--- 229 (264)
T d1r3da_ 159 QAVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAES-S--- 229 (264)
T ss_dssp SGGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHH-H---
T ss_pred hhhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHH-----HHHHhc-C---
Confidence 00000000000 0000 0 00112345678999999999999654 222221 1
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
++++++++++||.+.. +...++.+.|.+||+..+
T Consensus 230 -~~~~~~i~~~gH~~~~-e~P~~~~~~i~~fl~~l~ 263 (264)
T d1r3da_ 230 -GLSYSQVAQAGHNVHH-EQPQAFAKIVQAMIHSII 263 (264)
T ss_dssp -CSEEEEETTCCSCHHH-HCHHHHHHHHHHHHHHHC
T ss_pred -CCeEEEECCCCCchHH-HCHHHHHHHHHHHHHhcc
Confidence 3688999999998664 445688899999998753
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.55 E-value=1e-14 Score=147.07 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=81.1
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+.+-+|.++++... + ..|+||++||.+.+ ...|...+..|+ .+|.|+++|+||. |.+....... .
T Consensus 12 fi~~~g~~i~y~~~------G--~g~~vvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~Dl~G~---G~S~~~~~~~-~ 76 (298)
T d1mj5a_ 12 FIEIKGRRMAYIDE------G--TGDPILFQHGNPTS--SYLWRNIMPHCA-GLGRLIACDLIGM---GDSDKLDPSG-P 76 (298)
T ss_dssp EEEETTEEEEEEEE------S--CSSEEEEECCTTCC--GGGGTTTGGGGT-TSSEEEEECCTTS---TTSCCCSSCS-T
T ss_pred EEEECCEEEEEEEE------c--CCCcEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCCC---CCCCCCcccc-c
Confidence 33446788875543 1 24789999997765 446777777775 5699999999994 4432211111 1
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
......+..+.+..+.... ...+++.++|||+||.+++.++.++|+++.++++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~ 134 (298)
T d1mj5a_ 77 ERYAYAEHRDYLDALWEAL-DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134 (298)
T ss_dssp TSSCHHHHHHHHHHHHHHT-TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred cccccchhhhhhccccccc-cccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence 1122334443333333222 245789999999999999999999999999988876543
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.53 E-value=1.5e-16 Score=163.27 Aligned_cols=237 Identities=11% Similarity=0.029 Sum_probs=129.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-----CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-----~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+.+.++.|. ..++.| |||+||++.+... ..+...++.|+++||.|+++|+||.+.++...........
T Consensus 46 ~~v~~~~p~---~~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~~~--- 118 (318)
T d1qlwa_ 46 MYVRYQIPQ---RAKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL--- 118 (318)
T ss_dssp EEEEEEEET---TCCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHT---
T ss_pred EEEEEECCC---CCCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHHHH---
Confidence 444566776 345556 6779998876421 1233468899999999999999996665433211000000
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCce-eEEEecCCccchhhhhcCCCCC-c--chhhhhc
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCNLALMVGTTDIP-D--WCYVESY 671 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~-~a~v~~~p~~~~~~~~~~~~~~-~--~~~~~~~ 671 (771)
..++.+.+ +.......++.++|||+||.++..++....... ...++.++.............. . .......
T Consensus 119 -~~~~~~~l----~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (318)
T d1qlwa_ 119 -GKAPASSL----PDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL 193 (318)
T ss_dssp -TSSCGGGS----CCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHH----HHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHHhhh
Confidence 01111111 111123456778899999988877665443221 1111111111100000000000 0 0000000
Q ss_pred cCCCCCcCCCCCChhhH---------------HHHhhcCccccccCCCCcEEEEeeCCCCccCc-----HHHHHHHHHHH
Q 004149 672 GSKGKDSFTESPSVEDL---------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPV-----SNGLQYARALR 731 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~---------------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~-----~~~~~~~~~l~ 731 (771)
................. +......+...+..+++|+|+++|++|.++|+ ..+..+++.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~~l~ 273 (318)
T d1qlwa_ 194 DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALN 273 (318)
T ss_dssp TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccChhhhHHHHHHHHHHHHH
Confidence 00000000000000000 00112245556777899999999999999985 45667888899
Q ss_pred hCCCCEEEEEeC-----CCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 732 EKGVETKVIVFP-----NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~-----~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++|.+++++.+| |++|++..+.+..++.+.|.+||+++
T Consensus 274 ~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 274 AAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 999999999977 56699877777779999999999986
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.53 E-value=2.1e-12 Score=131.39 Aligned_cols=285 Identities=13% Similarity=0.152 Sum_probs=163.7
Q ss_pred hcCccccceE-EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeE
Q 004149 35 TNISSIDKAW-TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKL 113 (771)
Q Consensus 35 ~~~~~~~~~~-~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~l 113 (771)
+.+|+...+. +.-+.+|+|+.++|... ..+.++++.... ....++.. ...+...+|||||++|
T Consensus 10 ~~~p~~~r~~~~~~a~~~~g~~l~~~~~----------~~v~i~~~~~~~-~~~~~~~H-----~~~v~~~~~sp~g~~l 73 (311)
T d1nr0a1 10 PSLPRTARGTAVVLGNTPAGDKIQYCNG----------TSVYTVPVGSLT-DTEIYTEH-----SHQTTVAKTSPSGYYC 73 (311)
T ss_dssp CCCCCCCTTCCCCCEECTTSSEEEEEET----------TEEEEEETTCSS-CCEEECCC-----SSCEEEEEECTTSSEE
T ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEEeC----------CEEEEEECCCCc-eeEEEcCC-----CCCEEEEEEeCCCCeE
Confidence 3455544432 12234689999999632 245566663321 22233322 2568899999999999
Q ss_pred EEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004149 114 LVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 114 a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
|.....+ .+.+|+ .+.......+.. ..+ .+.++.|+|||+.|+..+...
T Consensus 74 atg~~dg-----~i~iwd~~~~~~~~~~~~~~-~~~------~v~~v~~s~d~~~l~~~~~~~----------------- 124 (311)
T d1nr0a1 74 ASGDVHG-----NVRIWDTTQTTHILKTTIPV-FSG------PVKDISWDSESKRIAAVGEGR----------------- 124 (311)
T ss_dssp EEEETTS-----EEEEEESSSTTCCEEEEEEC-SSS------CEEEEEECTTSCEEEEEECCS-----------------
T ss_pred eccccCc-----eEeeeeeecccccccccccc-ccC------ccccccccccccccccccccc-----------------
Confidence 8765543 455662 222221121111 111 126899999999998875432
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...+.+|++++++..... ......+..+.|+|||+. ++.++.
T Consensus 125 -------------------------~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~----~l~sgs-------- 166 (311)
T d1nr0a1 125 -------------------------ERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPF----RIISGS-------- 166 (311)
T ss_dssp -------------------------SCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSC----EEEEEE--------
T ss_pred -------------------------cccccccccccccccccc-ccccccccccccccccee----eecccc--------
Confidence 234677888877654431 233445778899999997 665542
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS 350 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~ 350 (771)
....|.++|+ .+++ ...+..+...+....|+|||+.|+..+.+. .
T Consensus 167 ------~d~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~-----------~ 212 (311)
T d1nr0a1 167 ------DDNTVAIFEG-----------------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG-----------T 212 (311)
T ss_dssp ------TTSCEEEEET-----------------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------C
T ss_pred ------cccccccccc-----------------cccccccccccccccccccccCccccccccccccc-----------c
Confidence 2236888887 4444 344445566788999999999988777653 4
Q ss_pred ceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 351 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 351 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+.+||+.++..... +... .....| +...+..++|+|||+.|+ +...++. |..+|+.++++.+...
T Consensus 213 v~~~d~~~~~~~~~----------~~~~-~~~~~~-h~~~V~~~~~s~~~~~l~-tgs~Dg~--v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 213 IVLYNGVDGTKTGV----------FEDD-SLKNVA-HSGSVFGLTWSPDGTKIA-SASADKT--IKIWNVATLKVEKTIP 277 (311)
T ss_dssp EEEEETTTCCEEEE----------CBCT-TSSSCS-SSSCEEEEEECTTSSEEE-EEETTSE--EEEEETTTTEEEEEEE
T ss_pred cccccccccccccc----------cccc-cccccc-ccccccccccCCCCCEEE-EEeCCCe--EEEEECCCCcEEEEEE
Confidence 78888876543211 0000 000110 112345678999998665 4444554 5555888888665333
Q ss_pred CCC--CceeeEEeecCCEEEEEE
Q 004149 431 AES--NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 431 ~~~--~~~~~~~s~d~~~l~~~~ 451 (771)
... ......+.++++.|+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~s~s 300 (311)
T d1nr0a1 278 VGTRIEDQQLGIIWTKQALVSIS 300 (311)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEE
T ss_pred CCCCccceEEEEEecCCEEEEEE
Confidence 222 122234555566555443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.48 E-value=6.5e-12 Score=126.41 Aligned_cols=243 Identities=15% Similarity=0.107 Sum_probs=154.2
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....+|||||++|+.....+ ..+..++ ..++..+.+...... ..+.|++||+.++.....
T Consensus 33 ~p~~va~spdG~~l~v~~~~~---~~i~v~d~~t~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----- 94 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHS---NDVSIIDTATNNVIATVPAGSSP----------QGVAVSPDGKQVYVTNMA----- 94 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT-----
T ss_pred CceEEEEeCCCCEEEEEECCC---CEEEEEECCCCceeeeeeccccc----------cccccccccccccccccc-----
Confidence 356789999999996544322 2354444 344444444443333 488999999988775432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...+.+++..+++.... ...........|+|||+. +
T Consensus 95 --------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~----~ 130 (301)
T d1l0qa2 95 --------------------------------------SSTLSVIDTTSNTVAGT--VKTGKSPLGLALSPDGKK----L 130 (301)
T ss_dssp --------------------------------------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----E
T ss_pred --------------------------------------cceeeecccccceeeee--ccccccceEEEeecCCCe----e
Confidence 25788899988876555 344445677899999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++... ....++.++. .+.................++||++.++......
T Consensus 131 ~~~~~--------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 131 YVTNN--------------GDKTVSVINT-----------------VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp EEEET--------------TTTEEEEEET-----------------TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred eeeec--------------cccceeeeec-----------------cccceeeecccCCCceEEEeeccccceeeecccc
Confidence 76652 2235777776 4554444434444567789999999887766542
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..+.+++......... ... . .......|++|++.+++.........|+.+
T Consensus 180 ----------~~~~~~~~~~~~~~~~----------~~~---~-------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~ 229 (301)
T d1l0qa2 180 ----------MSISVIDTVTNSVIDT----------VKV---E-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (301)
T ss_dssp ----------TEEEEEETTTTEEEEE----------EEC---S-------SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ----------cccccccccceeeeec----------ccc---c-------CCcceeeccccccccccccccceeeeeeee
Confidence 2344555443322110 000 0 012356789999998877665556678999
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|+.+++...............|+|||++|+.+.... ..|.+.++.++
T Consensus 230 D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~---~~i~v~D~~t~ 276 (301)
T d1l0qa2 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFC---NTVSVIDTATN 276 (301)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred ecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCC---CeEEEEECCCC
Confidence 999988765433333456678999999887765433 35777776554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.9e-12 Score=131.00 Aligned_cols=264 Identities=11% Similarity=0.051 Sum_probs=161.6
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
|+||++|+-. . ++.+.+|++........ +.........+.+...+|||||++|+.....+ .+.+
T Consensus 60 s~~g~~latg---------~-dg~V~iWd~~~~~~~~~-~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg-----~i~i 123 (337)
T d1gxra_ 60 SNPTRHVYTG---------G-KGCVKVWDISHPGNKSP-VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLSI 123 (337)
T ss_dssp CSSSSEEEEE---------C-BSEEEEEETTSTTCCSC-SEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEEE
T ss_pred CCCCCEEEEE---------E-CCEEEEEEccCCcccce-eEEeeecCCCCcEEEEEEcCCCCEEEEeeccc-----cccc
Confidence 5677766542 1 24577777754432211 11111111224578899999999998765543 4556
Q ss_pred ec-C-CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004149 130 WS-Q-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 130 ~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
|+ . ...+....+.... .......|+||+..|+..+.
T Consensus 124 wd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~----------------------------------- 161 (337)
T d1gxra_ 124 WDLAAPTPRIKAELTSSA-------PACYALAISPDSKVCFSCCS----------------------------------- 161 (337)
T ss_dssp EECCCC--EEEEEEECSS-------SCEEEEEECTTSSEEEEEET-----------------------------------
T ss_pred cccccccccccccccccc-------cccccccccccccccccccc-----------------------------------
Confidence 63 2 2222222221111 01247889999998877533
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 208 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
...+.++++.+++..... ......+..++|+|+++. ++..+ .+..|.++|+
T Consensus 162 ---------d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~----~~~~~---------------~d~~v~i~d~ 212 (337)
T d1gxra_ 162 ---------DGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTK----LWTGG---------------LDNTVRSWDL 212 (337)
T ss_dssp ---------TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET
T ss_pred ---------cccccccccccccccccc-cccccccccccccccccc----ccccc---------------cccccccccc
Confidence 257889999888766552 233446778899999997 77665 2346888887
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004149 288 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+++..........+.+..|+|+|+.|+....+ ..+.++|+.+++......
T Consensus 213 -----------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~- 263 (337)
T d1gxra_ 213 -----------------REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES-----------SNVEVLHVNKPDKYQLHL- 263 (337)
T ss_dssp -----------------TTTEEEEEEECSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTSSCEEEECC-
T ss_pred -----------------ccceeecccccccceEEEEEcccccccceeccc-----------cccccccccccccccccc-
Confidence 555544333445567889999999998876654 348888887655321110
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEE
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNI 447 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l 447 (771)
+...+..++|+|||+.|+ +...++. |..+|..+++..........+....|+++++.|
T Consensus 264 -------------------~~~~i~~v~~s~~g~~l~-s~s~Dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l 321 (337)
T d1gxra_ 264 -------------------HESCVLSLKFAYCGKWFV-STGKDNL--LNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321 (337)
T ss_dssp -------------------CSSCEEEEEECTTSSEEE-EEETTSE--EEEEETTTCCEEEEEECSSCEEEEEECTTSCEE
T ss_pred -------------------cccccceEEECCCCCEEE-EEeCCCe--EEEEECCCCCEEEEccCCCCEEEEEEeCCCCEE
Confidence 111345678999999664 4444554 555588888776655555555667889998877
Q ss_pred EEEE
Q 004149 448 IAVS 451 (771)
Q Consensus 448 ~~~~ 451 (771)
+...
T Consensus 322 ~t~s 325 (337)
T d1gxra_ 322 VTGS 325 (337)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=4.5e-13 Score=132.92 Aligned_cols=215 Identities=15% Similarity=0.149 Sum_probs=129.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.|..+...++.|. .|+|+++||.........|.. ..+.++..++.|++||--... +...+.. .+
T Consensus 14 ~~r~~~~~v~~~~-------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~~~-~y~~~~~-----~~ 80 (267)
T d1r88a_ 14 MGRDIPVAFLAGG-------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYS-MYTNWEQ-----DG 80 (267)
T ss_dssp TTEEEEEEEECCS-------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTS-TTSBCSS-----CT
T ss_pred CCceeeEEEECCC-------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCCCc-CCccccc-----cc
Confidence 3566777776543 399999999544322233433 566778899999999842211 2222111 11
Q ss_pred ccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 594 SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 594 ~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
....++.+ +.+.++.++..++++|++|.|+||||+.|+.++.++|++|+++++.+|.++.......... .......
T Consensus 81 ~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~~~--~~~~~~~ 158 (267)
T d1r88a_ 81 SKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAI--AAGMQQF 158 (267)
T ss_dssp TCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHH--HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchhhh--hhHHhhh
Confidence 12233332 3566777777789999999999999999999999999999999999998754321100000 0000000
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCC---CCcEEEEeeCCCCccCc-----------HHHHHHHHHHHhCC-CC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDLRVPV-----------SNGLQYARALREKG-VE 736 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~vp~-----------~~~~~~~~~l~~~g-~~ 736 (771)
+........+. .....+.+.+|...++++ ..++++.+|..|..+.+ .....+.++|++.+ .+
T Consensus 159 ~~~~~~~~~g~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 235 (267)
T d1r88a_ 159 GGVDTNGMWGA---PQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHN 235 (267)
T ss_dssp HCCCTHHHHCC---GGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cCCcHhhccCC---cchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHHHHHHHcCCCc
Confidence 00000000000 111233445665544432 46789999999876543 24556777887764 57
Q ss_pred EEEEEeCCCCccC
Q 004149 737 TKVIVFPNDVHGI 749 (771)
Q Consensus 737 ~~~~~~~~~~H~~ 749 (771)
+.+...++++|.+
T Consensus 236 ~~~~~~~~G~H~W 248 (267)
T d1r88a_ 236 GHFDFPASGDNGW 248 (267)
T ss_dssp EEEECCSSCCSSH
T ss_pred EEEEEcCCCeECh
Confidence 8888888889965
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=9.1e-13 Score=131.71 Aligned_cols=208 Identities=14% Similarity=0.093 Sum_probs=122.1
Q ss_pred CCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC--ccccchhh--HHHHHHHHH
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--VGSQDVND--VLTAIDHVI 608 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~--~~~~~~~D--~~~~i~~l~ 608 (771)
+.|+|+++||.+.......|.. ..+.+++.|++||+||-.... +...+....... .+....++ +.+.+.+|.
T Consensus 28 ~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~ 106 (280)
T d1dqza_ 28 GPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS-FYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQ 106 (280)
T ss_dssp SSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC-TTSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHH
T ss_pred CCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCCC-cCccccCCcccccCCcchhHHHHHHHHHHHHHH
Confidence 5699999999654332334443 456788999999999953322 222221111111 11112222 235566676
Q ss_pred HcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhH
Q 004149 609 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDL 688 (771)
Q Consensus 609 ~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (771)
++..+|++|++|+|+||||++|+.++.++|++|+++++.+|.++........ .... .....+......+.+.+ ..
T Consensus 107 ~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~---~~ 181 (280)
T d1dqza_ 107 ANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPT-LIGL-AMNDSGGYNANSMWGPS---SD 181 (280)
T ss_dssp HHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHH-HHHH-HHHHTTSCCHHHHHCST---TS
T ss_pred HhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccCcchh-hhhh-hHhhccCCCHhhccCCc---ch
Confidence 7766899999999999999999999999999999999999987532110000 0000 00000100000000001 11
Q ss_pred HHHhhcCccccccCC---CCcEEEEeeCCCCccC--------------cHHHHHHHHHHHhCCCCEEEEE-eCCCCccC
Q 004149 689 TRFHSKSPISHISKV---KTPTIFLLGAQDLRVP--------------VSNGLQYARALREKGVETKVIV-FPNDVHGI 749 (771)
Q Consensus 689 ~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~vp--------------~~~~~~~~~~l~~~g~~~~~~~-~~~~~H~~ 749 (771)
..+...+|...++++ ..++++.+|..|...+ ......+.+.|++++.....+. .++++|.+
T Consensus 182 ~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~g~~~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 182 PAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSW 260 (280)
T ss_dssp HHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSH
T ss_pred hhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHHHHHHHHHHHHHcCCCeEEEEEcCCCccCc
Confidence 234456666655543 3678999998886543 2446778888988887644444 45678965
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.7e-11 Score=125.26 Aligned_cols=292 Identities=10% Similarity=0.020 Sum_probs=146.3
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCC-CccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC
Q 004149 54 TQAMFSISQPNLLANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 132 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~ 132 (771)
++++|..+..+ ..|.+|+++..+. ...+....+ +.+...+|||||++|++. ...++.-++|.+...
T Consensus 3 ~~~v~v~~~~~-------~~I~v~~~~~~~~l~~~~~~~~~-----~~v~~la~spDG~~L~v~-~~~d~~i~~~~i~~~ 69 (333)
T d1ri6a_ 3 KQTVYIASPES-------QQIHVWNLNHEGALTLTQVVDVP-----GQVQPMVVSPDKRYLYVG-VRPEFRVLAYRIAPD 69 (333)
T ss_dssp EEEEEEEEGGG-------TEEEEEEECTTSCEEEEEEEECS-----SCCCCEEECTTSSEEEEE-ETTTTEEEEEEECTT
T ss_pred ceEEEEECCCC-------CcEEEEEEcCCCCeEEEEEEcCC-----CCEeEEEEeCCCCEEEEE-ECCCCeEEEEEEeCC
Confidence 45667665433 4666666754432 222322333 557789999999999544 433344455666533
Q ss_pred Ccc-eEEEec--CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC--CCCCccCCCCCCcccccCC
Q 004149 133 SQL-EKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG--GSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 133 ~~~-~~~~~~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d 207 (771)
+.. +..... .... ..++|||||++|+........ ...+....... .........+.....+++|
T Consensus 70 ~~~~~~~~~~~~~~~p----------~~l~~spDg~~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d 138 (333)
T d1ri6a_ 70 DGALTFAAESALPGSL----------THISTDHQGQFVFVGSYNAGN-VSVTRLEDGLPVGVVDVVEGLDGCHSANISPD 138 (333)
T ss_dssp TCCEEEEEEEECSSCC----------SEEEECTTSSEEEEEETTTTE-EEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred CCcEEEeeecccCCCc----------eEEEEcCCCCEEeecccCCCc-eeeeccccccceecccccCCCccceEEEeeec
Confidence 322 222222 1222 478999999998776543211 00111000000 0000112223334556666
Q ss_pred cCcccCCc-cCceEEEEEccCCceeec-----cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 208 WGETYAGK-RQPSLFVININSGEVQAV-----KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 208 ~g~~~~~~-~~~~l~v~d~~~~~~~~l-----~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
....+... ....|.+++......... ........+..++|+++++. ++... .... .
T Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~----~~~~~-~~~~-------------~ 200 (333)
T d1ri6a_ 139 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY----AYCVN-ELNS-------------S 200 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE----EEEEE-TTTT-------------E
T ss_pred ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee----EEeec-cccC-------------c
Confidence 43322222 235677777655432211 01222334567899999985 55443 2211 2
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCc------ceecC---CCCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLP------VVNLT---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~lt---~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
....+... .... ...+. ........+.+||||++++...... ..+.
T Consensus 201 ~~v~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~----------~~~~ 255 (333)
T d1ri6a_ 201 VDVWELKD---------------PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA----------SLIT 255 (333)
T ss_dssp EEEEESSC---------------TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT----------TEEE
T ss_pred eEEEeecc---------------cccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC----------CeEE
Confidence 22222200 1111 11111 1122345678999999876655432 2344
Q ss_pred eeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 353 RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 353 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
++++........ +..... ....+..++|||||++|+++....+...+|.+|.++|+++++
T Consensus 256 ~~~~~~~~~~~~------~~~~~~----------~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 256 VFSVSEDGSVLS------KEGFQP----------TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp EEEECTTSCCEE------EEEEEE----------CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEE------EEEEeC----------CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence 444433322111 000000 001245788999999987776666778899999999988765
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=1.2e-12 Score=130.59 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=136.1
Q ss_pred CCceEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCC----------
Q 004149 517 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSL---------- 578 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~-----~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~---------- 578 (771)
-|.++...+|.|+++. .++++|+|+++||.+.. ...|.. ....+.+.|++|++++.....
T Consensus 24 l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~~~~~~~~~~ 101 (299)
T d1pv1a_ 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp SSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEECCSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC--HHHHHHhhhHHHHHHHcCCceecCCCcccccccCCccccc
Confidence 3677888999998762 35679999999996543 223322 345566789999998742210
Q ss_pred ---CCChhhhhcCCC-Cc-cccchhhHH--HHHHHHHHcCCC-------CCCeEEEEEcChhHHHHHHHHHh--CCCcee
Q 004149 579 ---GFGEEALQSLPG-KV-GSQDVNDVL--TAIDHVIDMGLA-------NPSKVTVVGGSHGGFLTTHLIGQ--APDKFV 642 (771)
Q Consensus 579 ---~~g~~~~~~~~~-~~-~~~~~~D~~--~~i~~l~~~~~~-------d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~ 642 (771)
+....+...... .+ +....++.+ +.+.++.++..+ +.++.+|.|+||||+.|+.++.+ +|++|.
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al~~~~p~~f~ 181 (299)
T d1pv1a_ 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYK 181 (299)
T ss_dssp SSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHHHTGGGTCCS
T ss_pred ccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHHHhcCCCceE
Confidence 001111110000 00 001122221 233344443222 33679999999999999999976 489999
Q ss_pred EEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccc---cCC-CCcEEEEeeCCCCcc
Q 004149 643 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---SKV-KTPTIFLLGAQDLRV 718 (771)
Q Consensus 643 a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---~~i-~~P~Lii~G~~D~~v 718 (771)
++++.+|..+....... .......++. ....+...++...+ .+. ..++++.+|++|...
T Consensus 182 ~~~s~s~~~~~~~~~~~----~~~~~~~~g~-------------~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~ 244 (299)
T d1pv1a_ 182 SCSAFAPIVNPSNVPWG----QKAFKGYLGE-------------EKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp EEEEESCCCCSTTSHHH----HHHHHHHSCC-----------------CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTT
T ss_pred EEeeccCcCCcccccch----hhhhhhhccc-------------chhhhhhcCHHHHHHHhhccCCcceeEecCCCCcch
Confidence 99999998653211000 0000011111 01122233333322 222 356888899999987
Q ss_pred CcH-HHHHHHHHHHhCCCC--EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 719 PVS-NGLQYARALREKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 719 p~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+.. ..+.|.+++++++.+ +++...||.+|.+. -....+...+.|+.++|+
T Consensus 245 ~~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~---yW~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 245 EEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TTTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred hhhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 643 346788999888865 67777888789752 123556677899999875
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.42 E-value=8.1e-14 Score=139.25 Aligned_cols=192 Identities=12% Similarity=-0.003 Sum_probs=115.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----cchHHHHHHH----HCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLS----SVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----~~~~~~~~la----~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
+..+++|.|+++++.+++|+|+++||+++..... ........+. ..++.|+.+++++....+..+...
T Consensus 38 ~r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--- 114 (273)
T d1wb4a1 38 TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQE--- 114 (273)
T ss_dssp EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSCSTTCCTTTHHHH---
T ss_pred eEEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccCCCCCccccchhc---
Confidence 5689999999998889999999999987543211 1112222222 346899999988755443332111
Q ss_pred CccccchhhHHHHHH---------HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCC
Q 004149 591 KVGSQDVNDVLTAID---------HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD 661 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~---------~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~ 661 (771)
...++...++ .+..+..+|+++++|+|+|+||++++.++.++|++|+++++.+|.........
T Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~~~~~~--- 186 (273)
T d1wb4a1 115 -----FRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQ--- 186 (273)
T ss_dssp -----HHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBSSSHH---
T ss_pred -----ccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccccCCCcc---
Confidence 1112221111 11122236889999999999999999999999999999999998753211000
Q ss_pred CCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHH----------
Q 004149 662 IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR---------- 731 (771)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~---------- 731 (771)
... ........ .........++++..|+.|..+ .....+.+.+.
T Consensus 187 -------~~~-------------~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 240 (273)
T d1wb4a1 187 -------DKA-------------NSIAEAIN----RSGLSKREYFVFAATGSEDIAY--ANMNPQIEAMKALPHFDYTSD 240 (273)
T ss_dssp -------HHH-------------HHHHHHHH----HHTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHHTSTTCCBBSC
T ss_pred -------ccc-------------ccchhhhh----hhhhcccceEEEEecCCCCccc--ccchhHHHHHHHHHHHHHHHH
Confidence 000 00000000 0112223355777788877654 33444444433
Q ss_pred hCCCCEEEEEeCCCCcc
Q 004149 732 EKGVETKVIVFPNDVHG 748 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~ 748 (771)
..+..+.+..+++++|.
T Consensus 241 ~~~~~~~~~~~~~ggH~ 257 (273)
T d1wb4a1 241 FSKGNFYFLVAPGATHW 257 (273)
T ss_dssp TTTCCEEEEEETTCCSS
T ss_pred hcCCCEEEEEECCCccC
Confidence 33557889999999995
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=5.2e-13 Score=131.93 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
|.||++||.+.+ ...|...+..|.+. ||.|+++|+|| +|.+... ....++++...+..+.+.. +
T Consensus 3 ~PvvllHG~~~~--~~~~~~~~~~l~~~~~~~~v~~~d~~G---~g~S~~~------~~~~~~~~~~~l~~~l~~l--~- 68 (268)
T d1pjaa_ 3 KPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAKA--P- 68 (268)
T ss_dssp CCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHHC--T-
T ss_pred CCEEEECCCCCC--HHHHHHHHHHHHhhCCCeEEEEeCCCC---CCCCCCc------cccCHHHHHHHHHHHHhcc--C-
Confidence 336789997665 45888899999764 89999999999 6665421 1233555555565555553 3
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCC-ceeEEEecCC
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 649 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p 649 (771)
+++.|+||||||.+++.+|.++|+ +++.+|+.++
T Consensus 69 ~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 69 QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 789999999999999999999998 5999888776
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.40 E-value=8.4e-13 Score=139.17 Aligned_cols=120 Identities=16% Similarity=0.128 Sum_probs=90.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC------cEEEEECCCCCCCCChhhhhcCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG------YSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G------~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
+|.+||.+.+... .+..+.||++||.|.+ ...|...+..|++.| |.||+||+|| ||.+.. +.
T Consensus 90 ~G~~iHf~h~~~~----~~~~~pLlLlHG~P~s--~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG---~G~S~~---P~ 157 (394)
T d1qo7a_ 90 EGLTIHFAALFSE----REDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSG---PP 157 (394)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCC---CC
T ss_pred CCEEEEEEEEecc----CCCCCEEEEecccccc--HHHHHHHHHhhccccCCcccceeeecccccc---cCCCCC---CC
Confidence 6889987766543 3456789999998887 568999999999988 9999999999 655532 22
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
........++...+..+.... ..++..++|||+||.++..++..+|+.+.++++....
T Consensus 158 ~~~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~ 215 (394)
T d1qo7a_ 158 LDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCA 215 (394)
T ss_dssp SSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeeec
Confidence 222334566666666666652 3467899999999999999999999988888776543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.38 E-value=4.8e-11 Score=123.28 Aligned_cols=308 Identities=9% Similarity=-0.031 Sum_probs=171.9
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC-----
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN----- 121 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~----- 121 (771)
...+|||++++ ..+.. .+.....+|++|.. .++....... +....++|||||++|++......
T Consensus 7 ~a~spdg~~~~-v~~~~---~~~~~~~v~v~D~~--tg~~~~~~~~------g~~~~~a~SpDg~~l~v~~~~~~~~~~g 74 (355)
T d2bbkh_ 7 EAPAPDARRVY-VNDPA---HFAAVTQQFVIDGE--AGRVIGMIDG------GFLPNPVVADDGSFIAHASTVFSRIARG 74 (355)
T ss_dssp CCCCCCTTEEE-EEECG---GGCSSEEEEEEETT--TTEEEEEEEE------CSSCEEEECTTSSCEEEEEEEEEETTEE
T ss_pred EeeCCCCCEEE-EEecc---cCCCcCeEEEEECC--CCcEEEEEEC------CCCCceEEcCCCCEEEEEeCCCcccccc
Confidence 34578999984 44332 22345688997753 3333222111 33457899999999987654211
Q ss_pred CCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004149 122 ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
.....+.+| ..++....+.........+ ......+.|||||+++++....
T Consensus 75 ~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~-------------------------- 126 (355)
T d2bbkh_ 75 ERTDYVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDGKTLLFYQFS-------------------------- 126 (355)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCB--SCCGGGEEECTTSSEEEEEECS--------------------------
T ss_pred CCCCEEEEEECCCCCEEEEEecCCcceeec--CCCCceEEEecCCCeeEEecCC--------------------------
Confidence 112244455 3455555444322211111 0112468899999998775322
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC------CccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS------LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~------~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
....+++++..+++.......+.. .....+.+++||+. +++....
T Consensus 127 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~----~~v~~~~--------- 177 (355)
T d2bbkh_ 127 ----------------PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL----AKVAFGT--------- 177 (355)
T ss_dssp ----------------SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCE----EEEECCS---------
T ss_pred ----------------CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCE----EEEEecC---------
Confidence 225678888888776543111211 12335678889886 6554421
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004149 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
...+...+. ..... ........+.+++++..+++.+.. ..+++
T Consensus 178 -----~~~~~~~~~-----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v 220 (355)
T d2bbkh_ 178 -----EGTPEITHT-----------------EVFHP----EDEFLINHPAYSQKAGRLVWPTYT-----------GKIHQ 220 (355)
T ss_dssp -----SSCCEEEEC-----------------CCCSC----TTSCBCSCCEEETTTTEEEEEBTT-----------SEEEE
T ss_pred -----CCeEEEEec-----------------ccccc----eecceeeeccccCCCCeEEEecCC-----------CeEEE
Confidence 123444443 11111 112234557788899999888754 25888
Q ss_pred eecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEE
Q 004149 354 IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELL 426 (771)
Q Consensus 354 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~ 426 (771)
+++.++....+............. . ........+.+++|++.+++..... ....|+.+|..+++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~----~---~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~ 293 (355)
T d2bbkh_ 221 IDLSSGDAKFLPAVEALTEAERAD----G---WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 293 (355)
T ss_dssp EECTTSSCEECCCEESSCHHHHHT----T---EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred EecCCCcEEEEeccCCcccceEee----e---eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE
Confidence 888876653332111100000000 0 0011234578999999888776543 2457999999988866
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
.............|+|||+.++++....+ ..|++.+..+++
T Consensus 294 ~~~~~~~~~~~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 294 AKFEMGHEIDSINVSQDEKPLLYALSTGD--KTLYIHDAESGE 334 (355)
T ss_dssp EEEEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEETTTCC
T ss_pred EEecCCCCEEEEEEcCCCCeEEEEEECCC--CEEEEEECCCCC
Confidence 44332223455789999997766665443 568888876553
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.33 E-value=7.8e-11 Score=119.53 Aligned_cols=238 Identities=13% Similarity=0.077 Sum_probs=143.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....+++|+|+.|||.... .+++.+ ......++... ... +.+++|||||++||..+.
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~-----~v~i~~~~~~~~~~~~~~H~~~----------v~~~~~sp~g~~latg~~----- 78 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGT-----SVYTVPVGSLTDTEIYTEHSHQ----------TTVAKTSPSGYYCASGDV----- 78 (311)
T ss_dssp CCCCCEECTTSSEEEEEETT-----EEEEEETTCSSCCEEECCCSSC----------EEEEEECTTSSEEEEEET-----
T ss_pred CeEEEEEcCCCCEEEEEeCC-----EEEEEECCCCceeEEEcCCCCC----------EEEEEEeCCCCeEecccc-----
Confidence 34567899999999997532 244444 44444444432 222 269999999999987643
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCCccceEEEecCCCCC
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
+..|.+||+.+++.. .+ ......+..+.|+|||+.
T Consensus 79 ---------------------------------------dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v~~s~d~~~- 116 (311)
T d1nr0a1 79 ---------------------------------------HGNVRIWDTTQTTHILKTTI--PVFSGPVKDISWDSESKR- 116 (311)
T ss_dssp ---------------------------------------TSEEEEEESSSTTCCEEEEE--ECSSSCEEEEEECTTSCE-
T ss_pred ---------------------------------------CceEeeeeeecccccccccc--ccccCccccccccccccc-
Confidence 257899999877532 23 223446788999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+.. ....+.+++++ .+.....+..+...+....|+|||+.++..
T Consensus 117 ---l~~~~~~-------------~~~~~~v~~~~----------------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 117 ---IAAVGEG-------------RERFGHVFLFD----------------TGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp ---EEEEECC-------------SSCSEEEEETT----------------TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred ---ccccccc-------------ccccccccccc----------------cccccccccccccccccccccccceeeecc
Confidence 7776521 11234555651 223345666666778889999999975443
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
...+ ..|.+||+.+++....... +...+..+.|+||++.|+ +...++...
T Consensus 165 gs~d----------~~i~i~d~~~~~~~~~~~~-------------------~~~~i~~v~~~p~~~~l~-~~~~d~~v~ 214 (311)
T d1nr0a1 165 GSDD----------NTVAIFEGPPFKFKSTFGE-------------------HTKFVHSVRYNPDGSLFA-STGGDGTIV 214 (311)
T ss_dssp EETT----------SCEEEEETTTBEEEEEECC-------------------CSSCEEEEEECTTSSEEE-EEETTSCEE
T ss_pred cccc----------ccccccccccccccccccc-------------------ccccccccccCccccccc-ccccccccc
Confidence 3322 3588889876543211100 011234678999998664 444455544
Q ss_pred EEEEECCCCcEEEecCCC--------CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 415 IISVNVSSGELLRITPAE--------SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~--------~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
+ +|+.+++........ ..+....|+++++.|+....+ ..|++.++.+
T Consensus 215 ~--~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D----g~v~iwd~~t 269 (311)
T d1nr0a1 215 L--YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----KTIKIWNVAT 269 (311)
T ss_dssp E--EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT----SEEEEEETTT
T ss_pred c--cccccccccccccccccccccccccccccccCCCCCEEEEEeCC----CeEEEEECCC
Confidence 4 477676654433211 134456788999877754432 2466666543
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.33 E-value=4.8e-12 Score=116.90 Aligned_cols=168 Identities=16% Similarity=0.039 Sum_probs=114.2
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEE
Q 004149 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 619 (771)
|||+||.+.+ ...|...++.|+++||.|+.+++++.+.... ......+++.+.++.+.++ .+.+++.
T Consensus 5 Vv~vHG~~~~--~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~i~~~~~~--~~~~~v~ 71 (179)
T d1ispa_ 5 VVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTG---------TNYNNGPVLSRFVQKVLDE--TGAKKVD 71 (179)
T ss_dssp EEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTC---------CHHHHHHHHHHHHHHHHHH--HCCSCEE
T ss_pred EEEECCCCCC--HHHHHHHHHHHHHcCCeEEEEecCCcccccc---------ccchhhhhHHHHHHHHHHh--cCCceEE
Confidence 6789997654 4578889999999999999999887432211 1112355666677776665 2457899
Q ss_pred EEEcChhHHHHHHHHHhC--CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCcc
Q 004149 620 VVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 620 l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
|+||||||.++..++.++ +++++.+|++++........ ..+
T Consensus 72 lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~~-----------------------~l~-------------- 114 (179)
T d1ispa_ 72 IVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK-----------------------ALP-------------- 114 (179)
T ss_dssp EEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB-----------------------CCC--------------
T ss_pred EEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchhh-----------------------hcC--------------
Confidence 999999999999998876 57899999887643211000 000
Q ss_pred ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 698 ~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
........|++.++|..|.+|++..+. +. ..+.+.+++.+|... ..+ .+.++.+.+||+.
T Consensus 115 ~~~~~~~~~~~~i~~~~D~~v~~~~~~-----l~----~~~~~~~~~~~H~~l-~~~-~~v~~~i~~~L~~ 174 (179)
T d1ispa_ 115 GTDPNQKILYTSIYSSADMIVMNYLSR-----LD----GARNVQIHGVGHIGL-LYS-SQVNSLIKEGLNG 174 (179)
T ss_dssp CSCTTCCCEEEEEEETTCSSSCHHHHC-----CB----TSEEEEESSCCTGGG-GGC-HHHHHHHHHHHTT
T ss_pred CcccccCceEEEEEecCCcccCchhhc-----CC----CceEEEECCCCchhh-ccC-HHHHHHHHHHHhc
Confidence 001123578999999999999876531 21 246678889999643 222 3678888888763
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.30 E-value=1.6e-10 Score=115.96 Aligned_cols=242 Identities=11% Similarity=0.106 Sum_probs=147.2
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..||||++|+.+... ...|.++++... +..+..... ......+|++||+.+++....+ ..+.
T Consensus 38 a~spdG~~l~v~~~~--------~~~i~v~d~~t~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~ 99 (301)
T d1l0qa2 38 VISPDGTKVYVANAH--------SNDVSIIDTATN--NVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS---STLS 99 (301)
T ss_dssp EECTTSSEEEEEEGG--------GTEEEEEETTTT--EEEEEEECS-----SSEEEEEECTTSSEEEEEETTT---TEEE
T ss_pred EEeCCCCEEEEEECC--------CCEEEEEECCCC--ceeeeeecc-----cccccccccccccccccccccc---ceee
Confidence 357899988654322 246777776322 222111111 2356789999999987765432 2333
Q ss_pred EEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004149 128 ELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
..+ ..++....+...... ....|+|||+.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~dg~~~~~~~~~--------------------------------- 136 (301)
T d1l0qa2 100 VIDTTSNTVAGTVKTGKSP----------LGLALSPDGKKLYVTNNG--------------------------------- 136 (301)
T ss_dssp EEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT---------------------------------
T ss_pred ecccccceeeeeccccccc----------eEEEeecCCCeeeeeecc---------------------------------
Confidence 333 344444444433333 478999999998876432
Q ss_pred CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004149 207 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
...+.+++..+++.... ......+..+.|+||++. ++.... ....++..+
T Consensus 137 ----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~ 186 (301)
T d1l0qa2 137 ----------DKTVSVINTVTKAVINT--VSVGRSPKGIAVTPDGTK----VYVANF--------------DSMSISVID 186 (301)
T ss_dssp ----------TTEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSE----EEEEET--------------TTTEEEEEE
T ss_pred ----------ccceeeeeccccceeee--cccCCCceEEEeeccccc----eeeecc--------------ccccccccc
Confidence 25788889888876665 344445678899999997 666542 112445555
Q ss_pred cccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcc
Q 004149 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 366 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 366 (771)
. ...+...............|++||+.++...... ....|+++|+.+++....
T Consensus 187 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~--------~~~~v~v~D~~t~~~~~~-- 239 (301)
T d1l0qa2 187 T-----------------VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------YFNTVSMIDTGTNKITAR-- 239 (301)
T ss_dssp T-----------------TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS--------SCCEEEEEETTTTEEEEE--
T ss_pred c-----------------cceeeeecccccCCcceeeccccccccccccccc--------eeeeeeeeecCCCeEEEE--
Confidence 4 3344333333344567789999999987765442 135699999887653210
Q ss_pred ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 367 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 367 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
+.. . ..+..++|||||++|+++...++ .|..+|++++++..
T Consensus 240 --------~~~---~-------~~~~~va~spdg~~l~va~~~~~--~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 240 --------IPV---G-------PDPAGIAVTPDGKKVYVALSFCN--TVSVIDTATNTITA 280 (301)
T ss_dssp --------EEC---C-------SSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEE
T ss_pred --------EcC---C-------CCEEEEEEeCCCCEEEEEECCCC--eEEEEECCCCeEEE
Confidence 000 0 02346789999998877655444 56667999998653
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.30 E-value=2.6e-11 Score=122.83 Aligned_cols=230 Identities=14% Similarity=0.164 Sum_probs=135.0
Q ss_pred CCCCcEEEEEcCCCCCCCC------Ccc-hHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcCCC--------Ccccc
Q 004149 534 CSCDPLIVVLHGGPHSVSL------SSY-SKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQ 595 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~------~~~-~~~~---~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~--------~~~~~ 595 (771)
..+.++||++|+..++... ..| ..++ ..+--..|.||++|+.|.+. |.+....... .+...
T Consensus 36 ~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~-gSs~p~s~~p~tg~~~g~~FP~i 114 (357)
T d2b61a1 36 DEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCK-GTTGPSSINPQTGKPYGSQFPNI 114 (357)
T ss_dssp TTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSS-SSSCTTSBCTTTSSBCGGGCCCC
T ss_pred CCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCcc-ccCCcCCCCCCCCCCCCcccccc
Confidence 3456899999984433211 112 1111 12323459999999998542 2222211111 12234
Q ss_pred chhhHHHHHHHHHHcCCCCCCeE-EEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh--h-------hcCCCCCcc
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--M-------VGTTDIPDW 665 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--~-------~~~~~~~~~ 665 (771)
.+.|+.++-..|+++- .-+|+ +|+|.||||+.|+..+.++|+++..+|++++...... . .....-+.|
T Consensus 115 ti~D~v~aq~~Ll~~L--GI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~ 192 (357)
T d2b61a1 115 VVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNF 192 (357)
T ss_dssp CHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTC
T ss_pred hhHHHHHHHHHHHHHh--CcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCC
Confidence 6889999888888774 44667 7889999999999999999999999888776431100 0 000000111
Q ss_pred h------------------------------hhhhccCCCC---CcCCCCC-----------------ChhhHH----HH
Q 004149 666 C------------------------------YVESYGSKGK---DSFTESP-----------------SVEDLT----RF 691 (771)
Q Consensus 666 ~------------------------------~~~~~~~~~~---~~~~~~~-----------------~~~~~~----~~ 691 (771)
. +...++.... ..+.... +...+. .+
T Consensus 193 ~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~ 272 (357)
T d2b61a1 193 NGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRAL 272 (357)
T ss_dssp GGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHh
Confidence 0 0111111000 0000000 000000 00
Q ss_pred hhcCc-------cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC-CccCCCCCChHHHHHHHH
Q 004149 692 HSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND-VHGIERPQSDFESFLNIG 763 (771)
Q Consensus 692 ~~~sp-------~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~ 763 (771)
...++ ...+++|++|+|+|..+.|..+|+++.+++++.|+..++++++++++.. ||.-...+ ..++-+.|.
T Consensus 273 ~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~S~~GHdafL~e-~~~~~~~I~ 351 (357)
T d2b61a1 273 DMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAFLVD-YDQFEKRIR 351 (357)
T ss_dssp HHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGGGHHHHC-HHHHHHHHH
T ss_pred hhcccccccccHHHHHhhcCCCEEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCcC-HHHHHHHHH
Confidence 01111 1236889999999999999999999999999999999999999999875 77532222 234556677
Q ss_pred HHHH
Q 004149 764 LWFK 767 (771)
Q Consensus 764 ~wl~ 767 (771)
+||+
T Consensus 352 ~fL~ 355 (357)
T d2b61a1 352 DGLA 355 (357)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.29 E-value=1.7e-09 Score=112.24 Aligned_cols=301 Identities=8% Similarity=-0.017 Sum_probs=161.9
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCC-----
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN----- 121 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~----- 121 (771)
..+|||+++++..... ......+|++|..+ ++.. ++. . +....++|||||++|++......
T Consensus 27 a~spdg~~~~~~~~~~----~~~~~~v~v~D~~t--g~~~~~~~-~------~~~~~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 27 APGADGRRSYINLPAH----HSAIIQQWVLDAGS--GSILGHVN-G------GFLPNPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred ccCCCCCEEEEEcccc----cCCCceEEEEECCC--CCEEEEEe-C------CCCccEEEcCCCCEEEEEeecCCccccc
Confidence 3578999997764321 23446788877532 2332 221 1 23446899999999988765431
Q ss_pred CCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004149 122 ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
.....+.+| ..++....+..+......+ ...-..+.|||||+.+++.....
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~------------------------- 146 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDV--GPYSWMNANTPNNADLLFFQFAA------------------------- 146 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEe--ccCCCcEEEEeCCCcEEEEEEcC-------------------------
Confidence 112334445 3444444443322110000 00113678999999887764322
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
...+.+++..++++... .. ....+.++|||+. ++++.. ..
T Consensus 147 -----------------~~~~~~~~~~~~~~~~~--~~---~~~~~~~s~~g~~----~~v~~~--------------~d 186 (373)
T d2madh_ 147 -----------------GPAVGLVVQGGSSDDQL--LS---SPTCYHIHPGAPS----TFYLLC--------------AQ 186 (373)
T ss_pred -----------------CCceEEeeccCCeEEEE--ec---cceeEEEecCCCc----EEEEEc--------------CC
Confidence 24566777777665444 11 2446789999997 665542 22
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCC-------CCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-------~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
..+++++. .+++...... .........+++++..+ +.+.. ..++
T Consensus 187 g~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~v~ 237 (373)
T d2madh_ 187 GGLAKTDH-----------------AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYS-----------GKIL 237 (373)
T ss_pred CeEEEEEc-----------------CCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCC-----------ceEE
Confidence 36777776 3333322111 11123345566666544 33322 2355
Q ss_pred eeecCCCCCCCCcccee---eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCC
Q 004149 353 RIDWPTNGNFSSLEKIV---DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSS 422 (771)
Q Consensus 353 ~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~-------~~~~l~~~d~~t 422 (771)
+++..++....+..... ...... ..+ ......++++|++.+++..... ....++.+|..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t 307 (373)
T d2madh_ 238 QADISAAGATNKAPIDALSGGRKADT------WRP----GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred EEEcCCCeEEEEEeeccccCcEEeee------ecc----CcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC
Confidence 66655543221110000 000000 000 1224567899999877654422 234688889989
Q ss_pred CcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 423 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 423 g~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
++...............|++||+.++++..+.+ ..|++.|..+++
T Consensus 308 ~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~ 352 (373)
T d2madh_ 308 GQTSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGD 352 (373)
T ss_pred CcEEEEecCCCCeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCC
Confidence 886655544444566789999998776655444 357888876653
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.1e-10 Score=119.97 Aligned_cols=228 Identities=13% Similarity=0.047 Sum_probs=142.6
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
+|||+.|+.. ...+.|.+|++........ .+.. ....+....|+|++..++...... .+..
T Consensus 106 s~dg~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~----~i~~ 167 (337)
T d1gxra_ 106 LPDGCTLIVG---------GEASTLSIWDLAAPTPRIKAELTS-----SAPACYALAISPDSKVCFSCCSDG----NIAV 167 (337)
T ss_dssp CTTSSEEEEE---------ESSSEEEEEECCCC--EEEEEEEC-----SSSCEEEEEECTTSSEEEEEETTS----CEEE
T ss_pred cCCCCEEEEe---------eccccccccccccccccccccccc-----cccccccccccccccccccccccc----cccc
Confidence 4566665543 2335677776643322211 1111 124467788999999988765433 2333
Q ss_pred Ee-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004149 129 LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
.+ ..++......... + ...+++|+|+|+.+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~---~------~v~~l~~s~~~~~~~~~~~----------------------------------- 203 (337)
T d1gxra_ 168 WDLHNQTLVRQFQGHT---D------GASCIDISNDGTKLWTGGL----------------------------------- 203 (337)
T ss_dssp EETTTTEEEEEECCCS---S------CEEEEEECTTSSEEEEEET-----------------------------------
T ss_pred cccccccccccccccc---c------ccccccccccccccccccc-----------------------------------
Confidence 33 3333322222111 1 1258899999999888643
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 208 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
...+.+||+.+++.... ......+..++|+|+++. |+..+ ....|.++|+
T Consensus 204 ---------d~~v~i~d~~~~~~~~~--~~~~~~i~~l~~~~~~~~----l~~~~---------------~d~~i~i~d~ 253 (337)
T d1gxra_ 204 ---------DNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGEW----LAVGM---------------ESSNVEVLHV 253 (337)
T ss_dssp ---------TSEEEEEETTTTEEEEE--EECSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET
T ss_pred ---------cccccccccccceeecc--cccccceEEEEEcccccc----cceec---------------cccccccccc
Confidence 25788999988876554 334456778999999987 76554 2347888888
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004149 288 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+++......+...+....|||||+.|+..+.+ ..|.+||+.+++.......
T Consensus 254 -----------------~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D-----------g~i~iwd~~~~~~~~~~~~ 305 (337)
T d1gxra_ 254 -----------------NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQSKE 305 (337)
T ss_dssp -----------------TSSCEEEECCCSSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEEC
T ss_pred -----------------cccccccccccccccceEEECCCCCEEEEEeCC-----------CeEEEEECCCCCEEEEccC
Confidence 666666666667778999999999988876654 3588899887654221100
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
...+..++|+|||+.| ++...++...||.+
T Consensus 306 --------------------~~~v~~~~~s~d~~~l-~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 306 --------------------SSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp --------------------SSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred --------------------CCCEEEEEEeCCCCEE-EEEeCCCeEEEEEE
Confidence 1134567899999866 45566777777754
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.28 E-value=1.1e-10 Score=118.30 Aligned_cols=242 Identities=13% Similarity=0.127 Sum_probs=140.1
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC----------Ccch-H---HHHHHHHCCcEEEEECCCCCCCCChhh
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----------SSYS-K---SLAFLSSVGYSLLIVNYRGSLGFGEEA 584 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~----------~~~~-~---~~~~la~~G~~V~~~d~rG~~~~g~~~ 584 (771)
.+|.+..|--. ...+.++||++|+..++... ..|. . .-..+--.-|.||++|..|.+ +|.+.
T Consensus 27 ~~l~Y~t~G~l---n~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~-~~ss~ 102 (362)
T d2pl5a1 27 VVIAYETYGTL---SSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGC-KGSSG 102 (362)
T ss_dssp EEEEEEEEECC---CTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCS-SSSSS
T ss_pred ceEEEEeeecc---CCCCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCc-ccccC
Confidence 34444444322 33456999999984433211 1121 1 111233345999999999854 33222
Q ss_pred hhcCCC--------CccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh
Q 004149 585 LQSLPG--------KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 585 ~~~~~~--------~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 655 (771)
.+.... ......+.|+.++-+.|.++-.| +++. |+|.||||+.|+..|.+||+.++.+|.+++......
T Consensus 103 ~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~ 180 (362)
T d2pl5a1 103 PLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSA 180 (362)
T ss_dssp TTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCH
T ss_pred ccccccccccccCcCCccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCH
Confidence 221111 12234588988888888877444 4554 889999999999999999999999998876432100
Q ss_pred h---------hcCCCCCcch-----------------------------hhhhccCCC-----------CC--------c
Q 004149 656 M---------VGTTDIPDWC-----------------------------YVESYGSKG-----------KD--------S 678 (771)
Q Consensus 656 ~---------~~~~~~~~~~-----------------------------~~~~~~~~~-----------~~--------~ 678 (771)
. .....-+.|. +...+.... .. .
T Consensus 181 ~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k 260 (362)
T d2pl5a1 181 MQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGES 260 (362)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 0 0000000000 001111100 00 0
Q ss_pred CCCCCChhhHH----HHhhcCcc------ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC-CCc
Q 004149 679 FTESPSVEDLT----RFHSKSPI------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVH 747 (771)
Q Consensus 679 ~~~~~~~~~~~----~~~~~sp~------~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~~H 747 (771)
+....+...+. .+...++. ..+.+|++|+|+|..+.|..+|+++.+++++.|++++++++++.++. .||
T Consensus 261 ~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI~S~~GH 340 (362)
T d2pl5a1 261 FVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEGH 340 (362)
T ss_dssp SSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBSS
T ss_pred HHhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc
Confidence 00001111111 11111111 23789999999999999999999999999999999999999988865 477
Q ss_pred cCCCCCChHHHHHHHHHHHH
Q 004149 748 GIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~wl~ 767 (771)
.-...+. .++.+.|.+||+
T Consensus 341 daFL~e~-~~~~~~I~~FL~ 359 (362)
T d2pl5a1 341 DSFLLKN-PKQIEILKGFLE 359 (362)
T ss_dssp GGGGSCC-HHHHHHHHHHHH
T ss_pred chhccCH-HHHHHHHHHHHc
Confidence 5333333 356777878876
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=7.2e-10 Score=115.14 Aligned_cols=279 Identities=6% Similarity=-0.040 Sum_probs=147.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-----CCCC
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-----NESP 124 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-----~~~~ 124 (771)
++||++....... .......+|+++. ..++..+.+... ....++|||||+.|++..... +...
T Consensus 28 ~~~~~~~~v~~~~----~~~g~~~~~~~d~--~~~~~~~~~~~~------~~~~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 28 GAISRRSHITLPA----YFAGTTENWVSCA--GCGVTLGHSLGA------FLSLAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCTTEEEEEECT----TTCSSEEEEEEET--TTTEEEEEEEEC------TTCEEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCCCcceeEEeec----cCCCcceEEEEeC--CCCcEEEEEeCC------CCCcceECCCCCEEEEEcccCccccccccC
Confidence 5677765544321 1124467888663 444444444333 234689999999999876431 1222
Q ss_pred eEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004149 125 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
..+.+| ..++....+..+.... ......-..+.|||||++|++....
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~--~~~g~~p~~~a~SpDGk~l~va~~~----------------------------- 144 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPR--FSVGPRVHIIGNCASSACLLFFLFG----------------------------- 144 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCS--CCBSCCTTSEEECTTSSCEEEEECS-----------------------------
T ss_pred CeEEEEECCCCcEeeeecCCccce--ecccCCccceEECCCCCEEEEEeCC-----------------------------
Confidence 334455 3444444444332211 0001111478999999999876432
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC------ccceEEEecCCCCCccEEEEEeecCccee-------
Q 004149 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------SVGQVVWAPLNEGLHQYLVFVGWSSETRK------- 269 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~------~~~~~~wspDg~~~~~~l~~~~~~~~~~~------- 269 (771)
...+++||+.++++......+... ....+++++||+. +++.........
T Consensus 145 --------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~----~~~~~~~~~~~~~~~~~~~ 206 (368)
T d1mdah_ 145 --------------SSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASL----AASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp --------------SSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSC----EEEECCSSCCCCEECCCCS
T ss_pred --------------CCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCE----EEEEecCCceeeeeeeccc
Confidence 246777888777755442122111 2233566777775 555433222100
Q ss_pred ---------------eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC-------------Cccccc
Q 004149 270 ---------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------------ISSAFF 321 (771)
Q Consensus 270 ---------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------------~~~~~~ 321 (771)
.+.. .......++.+++ ..+....+... ......
T Consensus 207 ~~~~~~~~~~~~~~~~g~~-~~~~~~~v~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 268 (368)
T d1mdah_ 207 TGAQNCSSQAAQANYPGML-VWAVASSILQGDI-----------------PAAGATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp CTTSCBCSCCEEETTTTEE-EECBSSCCEEEEC-----------------CSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred ccccccceeecccccCcEE-EEecCCCEEEEee-----------------cCCceEEEeecccccceeeeeeecCCCcee
Confidence 0000 1122335666665 33332222111 112345
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004149 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~ 401 (771)
.+++||++.++......... ......+|+++|..+++......... ....+.|||||+
T Consensus 269 ~a~~~~~~~~~v~~~~~~~~--~~~~~~~v~v~D~~t~~~~~~~~~~~--------------------~~~~~a~spDG~ 326 (368)
T d1mdah_ 269 VAKLKNTDGIMILTVEHSRS--CLAAAENTSSVTASVGQTSGPISNGH--------------------DSDAIIAAQDGA 326 (368)
T ss_dssp EEEETTTTEEEEEEEECSSC--TTSCEEEEEEEESSSCCEEECCEEEE--------------------EECEEEECCSSS
T ss_pred EEEcCCCCEEEEEecCCCce--eecCCceEEEEECCCCcEeEEecCCC--------------------ceeEEEECCCCC
Confidence 78999999887765543211 11234579999998876422111110 134678999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 402 TMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
.++|.+.. +...|+.+|..+|+......
T Consensus 327 ~~ly~s~~-~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 327 SDNYANSA-GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CEEEEEET-TTTEEEEEESSSCEEEEECC
T ss_pred EEEEEEeC-CCCeEEEEECCCCCEEEEEE
Confidence 76655543 33468888999998775544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.25 E-value=2.3e-10 Score=114.96 Aligned_cols=265 Identities=14% Similarity=0.146 Sum_probs=142.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++||..+.++ .+.+|+ .++..+. ......+ .+.++.|+|||+.++. +.+...
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg-----~v~vWd~~~~~~~~~--~~~~h~~------~v~~v~~~~~g~~~~~-~~d~~v 78 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEG-----HINSWDISTGISNRV--FPDVHAT------MITGIKTTSKGDLFTV-SWDDHL 78 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEC--SSCSCSS------CEEEEEECTTSCEEEE-ETTTEE
T ss_pred CCcEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEE--EcCCCCC------cEEEEEeeccceeecc-cceeeE
Confidence 4588899999999998765433 456663 3332222 2111111 2368999999975543 333221
Q ss_pred CCCCccCCCCCCC---CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 177 SKPTFSLGSTKGG---SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 177 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
+ .|........ ..............++++ |..++......+.+|+.. +...+ ........++|+||++.
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~~~~~i~~~~~~--~~~~~---~~~~~~~~~~~s~~~~~ 150 (299)
T d1nr0a2 79 K--VVPAGGSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVAACYKHIAIYSHG--KLTEV---PISYNSSCVALSNDKQF 150 (299)
T ss_dssp E--EECSSSSSSCTTSCCEEECSSCEEEEEECTT-SSCEEEEESSEEEEEETT--EEEEE---ECSSCEEEEEECTTSCE
T ss_pred E--EeccCCccccccccccccccccccccccccc-cccccccccccccccccc--ccccc---ccccccccccccccccc
Confidence 1 2221111100 000111122223456666 444445556678888743 33333 22334567899999986
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee--cCCCCccccceeecCCCCEE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--lt~~~~~~~~p~~SpDG~~l 331 (771)
|+..+ .+..|.++|+ .+++... ...+...+....|+|+|+.|
T Consensus 151 ----l~~g~---------------~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 194 (299)
T d1nr0a2 151 ----VAVGG---------------QDSKVHVYKL-----------------SGASVSEVKTIVHPAEITSVAFSNNGAFL 194 (299)
T ss_dssp ----EEEEE---------------TTSEEEEEEE-----------------ETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ----ccccc---------------cccccccccc-----------------ccccccccccccccccccccccccccccc
Confidence 66554 2346888887 4444332 23345567889999999998
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+..+.+. .|++||+.++........ +.+ +...+..++|+|||+.|+ +...++
T Consensus 195 ~~~~~d~-----------~i~~~~~~~~~~~~~~~~---------------~~~-h~~~v~~l~~s~~~~~l~-sgs~dg 246 (299)
T d1nr0a2 195 VATDQSR-----------KVIPYSVANNFELAHTNS---------------WTF-HTAKVACVSWSPDNVRLA-TGSLDN 246 (299)
T ss_dssp EEEETTS-----------CEEEEEGGGTTEESCCCC---------------CCC-CSSCEEEEEECTTSSEEE-EEETTS
T ss_pred ccccccc-----------cccccccccccccccccc---------------ccc-cccccccccccccccceE-EEcCCC
Confidence 8766542 488888876543211110 000 111244678999998664 444555
Q ss_pred eeEEEEEECCCCcEE--EecCCC-CCceeeEEeecCCEEEEEE
Q 004149 412 SQVIISVNVSSGELL--RITPAE-SNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~--~l~~~~-~~~~~~~~s~d~~~l~~~~ 451 (771)
...|| |+.+++.. ...... .......++++++.|+...
T Consensus 247 ~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s 287 (299)
T d1nr0a2 247 SVIVW--NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287 (299)
T ss_dssp CEEEE--ETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEE
T ss_pred EEEEE--ECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEe
Confidence 55555 66665432 222221 2222345667777766544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.25 E-value=3e-10 Score=120.74 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=48.2
Q ss_pred CCCCCccccCCCEEEEEeeeC----CeeEEEEEECCCCcEE-Eec---------CCCCCceeeEEeecCCEEEEEEe-CC
Q 004149 390 SILSNPWLSDGCTMLLSSIWG----SSQVIISVNVSSGELL-RIT---------PAESNFSWSLLTLDGDNIIAVSS-SP 454 (771)
Q Consensus 390 ~~~~~~~s~dg~~l~~~~~~~----~~~~l~~~d~~tg~~~-~l~---------~~~~~~~~~~~s~d~~~l~~~~s-~~ 454 (771)
.+..++|||||++|++..... ....|..+|+++++.. ++. .....+....|||||++++++.. +.
T Consensus 305 ~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~ 384 (426)
T d1hzua2 305 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 384 (426)
T ss_dssp CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT
T ss_pred ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCC
Confidence 356788999999887643211 1124666788887632 221 11222344679999999987763 34
Q ss_pred CCCCeEEEEEecc
Q 004149 455 VDVPQVKYGYFVD 467 (771)
Q Consensus 455 ~~p~~l~~~~~~~ 467 (771)
.....|.+.|..+
T Consensus 385 ~~~~~i~v~D~~T 397 (426)
T d1hzua2 385 NDSSALVVVDDKT 397 (426)
T ss_dssp TSCCEEEEEETTT
T ss_pred CCCCeEEEEECCC
Confidence 5566677777544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.25 E-value=4.2e-10 Score=117.17 Aligned_cols=253 Identities=9% Similarity=0.046 Sum_probs=141.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+...+|||||+.||+..... .+.+| .+++...+..+. +..+. +.+++|||||++|+..+.+
T Consensus 9 pIt~~~~s~dg~~la~~~~~~-----~i~iw~~~~~~~~~~~~l~-gH~~~------V~~l~fsp~~~~l~s~s~D---- 72 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELK-EHNGQ------VTGVDWAPDSNRIVTCGTD---- 72 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEE-CCSSC------EEEEEEETTTTEEEEEETT----
T ss_pred CeEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCEEEEEEec-CCCCC------EEEEEECCCCCEEEEEECC----
Confidence 377889999999998875432 45556 334433333332 11122 3799999999998876432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|++||+.+++.+... -......+..+.|+||++.
T Consensus 73 ----------------------------------------~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~--- 109 (371)
T d1k8kc_ 73 ----------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK--- 109 (371)
T ss_dssp ----------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE---
T ss_pred ----------------------------------------CeEEEEeeccccccccccccccccccccccccccccc---
Confidence 57899999887654331 0223446788999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCCCEEEE
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
|+..+. ++...+|.++. .... ..........+.+..|+|||+.|+.
T Consensus 110 -l~~~s~-------------d~~i~i~~~~~-----------------~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s 158 (371)
T d1k8kc_ 110 -FAVGSG-------------SRVISICYFEQ-----------------ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 158 (371)
T ss_dssp -EEEEET-------------TSSEEEEEEET-----------------TTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred -ceeecc-------------cCcceeeeeec-----------------ccccccccccccccccccccccccccccceec
Confidence 776651 22224555543 1111 1122233456788999999999987
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccC-CCC--Ccc-cccCCCCCCccccCCCEEEEEeee
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE-GDC--FPG-LYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~--f~g-~~~~~~~~~~~s~dg~~l~~~~~~ 409 (771)
.+.+. .+.+|+.............. +.... ... +.. .....+..++|+|||+.|+. ...
T Consensus 159 ~s~D~-----------~v~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s-~~~ 221 (371)
T d1k8kc_ 159 GSCDF-----------KCRIFSAYIKEVEERPAPTP-----WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW-VSH 221 (371)
T ss_dssp EETTS-----------CEEEEECCCTTTSCCCCCBT-----TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE-EET
T ss_pred cccCc-----------EEEEEeeccCcccccccccc-----ccccccceeeeeeccCccCcEEEEEeecccccccc-ccc
Confidence 76553 36667765443221110000 00000 000 000 01112446789999997654 444
Q ss_pred CCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 410 GSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
++. |..+|+.+++.. .+......+....|++|++.| ++.+ +....++..+
T Consensus 222 d~~--i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~l-a~g~--d~~~~~~~~~ 272 (371)
T d1k8kc_ 222 DST--VCLADADKKMAVATLASETLPLLAVTFITESSLV-AAGH--DCFPVLFTYD 272 (371)
T ss_dssp TTE--EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE-EEET--TSSCEEEEEE
T ss_pred CCc--ceEEeeecccceeeeecccccceeeeecCCCCEE-EEEc--CCceEEEEee
Confidence 554 445577666644 344333445567889988644 3332 3444455544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.23 E-value=2.5e-10 Score=118.84 Aligned_cols=259 Identities=12% Similarity=0.073 Sum_probs=138.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
++||+.|++.. ..+.|.+|++... +..++. .+....+.+...+|||||++|+..+.+ +.-.+|.+
T Consensus 16 s~dg~~la~~~---------~~~~i~iw~~~~~--~~~~~~--~l~gH~~~V~~l~fsp~~~~l~s~s~D--~~i~vWd~ 80 (371)
T d1k8kc_ 16 NKDRTQIAICP---------NNHEVHIYEKSGN--KWVQVH--ELKEHNGQVTGVDWAPDSNRIVTCGTD--RNAYVWTL 80 (371)
T ss_dssp CTTSSEEEEEC---------SSSEEEEEEEETT--EEEEEE--EEECCSSCEEEEEEETTTTEEEEEETT--SCEEEEEE
T ss_pred CCCCCEEEEEe---------CCCEEEEEECCCC--CEEEEE--EecCCCCCEEEEEECCCCCEEEEEECC--CeEEEEee
Confidence 67999888753 2245666666432 222111 111122568899999999999876543 22333333
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcC
Q 004149 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 209 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 209 (771)
. .+......... ...+ .+.++.|+|||+.|+..+.+
T Consensus 81 ~-~~~~~~~~~~~-~~~~------~v~~i~~~p~~~~l~~~s~d------------------------------------ 116 (371)
T d1k8kc_ 81 K-GRTWKPTLVIL-RINR------AARCVRWAPNEKKFAVGSGS------------------------------------ 116 (371)
T ss_dssp E-TTEEEEEEECC-CCSS------CEEEEEECTTSSEEEEEETT------------------------------------
T ss_pred c-ccccccccccc-cccc------cccccccccccccceeeccc------------------------------------
Confidence 2 33333333321 1111 12689999999999886533
Q ss_pred cccCCccCceEEEEEccCCceeec---cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004149 210 ETYAGKRQPSLFVININSGEVQAV---KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l---~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
..|.+|+++....... ........+..+.|+|||+. |+..+. +..|.+++
T Consensus 117 --------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~----l~s~s~---------------D~~v~v~~ 169 (371)
T d1k8kc_ 117 --------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL----LAAGSC---------------DFKCRIFS 169 (371)
T ss_dssp --------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE----EEEEET---------------TSCEEEEE
T ss_pred --------Ccceeeeeecccccccccccccccccccccccccccccc----eecccc---------------CcEEEEEe
Confidence 3455555544332111 00223345678899999997 776552 22455555
Q ss_pred cccccch-hhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC
Q 004149 287 VSLYKSE-ASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 287 ~~~~~~~-~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
+...... .............+. ......+...+...+|||||+.|+..+.+. .|.+||+.++.....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-----------~i~iwd~~~~~~~~~ 238 (371)
T d1k8kc_ 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-----------TVCLADADKKMAVAT 238 (371)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-----------EEEEEEGGGTTEEEE
T ss_pred eccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC-----------cceEEeeecccceee
Confidence 4211000 000000000001111 122334455678899999999998877652 488899876543111
Q ss_pred ccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 365 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+.. ....+..++|+|||+.| .+ ..++...+|.++..++...
T Consensus 239 ----------~~~---------~~~~v~s~~fs~d~~~l-a~-g~d~~~~~~~~~~~~~~~~ 279 (371)
T d1k8kc_ 239 ----------LAS---------ETLPLLAVTFITESSLV-AA-GHDCFPVLFTYDSAAGKLS 279 (371)
T ss_dssp ----------EEC---------SSCCEEEEEEEETTEEE-EE-ETTSSCEEEEEETTTTEEE
T ss_pred ----------eec---------ccccceeeeecCCCCEE-EE-EcCCceEEEEeeCCCceEE
Confidence 000 00123467899999744 33 3356677888887665554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=4.9e-10 Score=116.48 Aligned_cols=279 Identities=13% Similarity=-0.007 Sum_probs=157.6
Q ss_pred ceEEEeCCCCCeEEEEe-cCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVR-NPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+.+|||+...+.. ....+..++|.++ ..++....+..... ..+.|||||+.|++......
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-----------~~~a~spDg~~i~~~~~~~~--- 87 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-----------SLAVAGHSGSDFALASTSFA--- 87 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-----------CEEEECTTSSCEEEEEEEET---
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-----------CcceECCCCCEEEEEcccCc---
Confidence 44556789999865443 2233566788888 66666665554332 37899999999999754321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC------CCccceEEEecCCC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK------SLSVGQVVWAPLNE 252 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~------~~~~~~~~wspDg~ 252 (771)
....+.....|.+||..++++......+. ......++|||||+
T Consensus 88 -------------------------------~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk 136 (368)
T d1mdah_ 88 -------------------------------RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp -------------------------------TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred -------------------------------cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence 11123345789999999988654311111 12345789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--------Cccccceee
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--------ISSAFFPRF 324 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--------~~~~~~p~~ 324 (771)
+ |++... ....|+++|+ .+++....... .+......+
T Consensus 137 ~----l~va~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 181 (368)
T d1mdah_ 137 C----LLFFLF--------------GSSAAAGLSV-----------------PGASDDQLTKSASCFHIHPGAAATHYLG 181 (368)
T ss_dssp C----EEEEEC--------------SSSCEEEEEE-----------------TTTEEEEEEECSSCCCCEEEETTEEECC
T ss_pred E----EEEEeC--------------CCCeEEEEEC-----------------CCCcEeEEeeccCcceEccCCCceEEEE
Confidence 9 887642 2237888887 55543222111 112344678
Q ss_pred cCCCCEEEEEecCCCCCCC--------Cc-----------------cccccceeeecCCCCCCCCccceeeEEecccccC
Q 004149 325 SPDGKFLVFLSAKSSVDSG--------AH-----------------SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 379 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g--------~~-----------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 379 (771)
++||+.+++.......... .+ ....+++++++..+....+ .......
T Consensus 182 ~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~ 253 (368)
T d1mdah_ 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMK--------AAIDGNE 253 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEE--------CCCCSSC
T ss_pred cCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEE--------eeccccc
Confidence 8999877765543311000 00 0011234444433322111 0000000
Q ss_pred CCCC-cccccCCCCCCccccCCCEEEEEeeeC------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 380 GDCF-PGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 380 ~~~f-~g~~~~~~~~~~~s~dg~~l~~~~~~~------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
.... .+........++++++++.+++..... ....|+.+|..+++...............|++||+.++++..
T Consensus 254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~ 333 (368)
T d1mdah_ 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEe
Confidence 0000 000112334678899999887766543 235799999999986654433333445789999987766665
Q ss_pred CCCCCCeEEEEEecccC
Q 004149 453 SPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 453 ~~~~p~~l~~~~~~~~~ 469 (771)
..+ ..|+++|..+++
T Consensus 334 ~~~--~~v~v~D~~tgk 348 (368)
T d1mdah_ 334 AGT--EVLDIYDAASDQ 348 (368)
T ss_dssp TTT--TEEEEEESSSCE
T ss_pred CCC--CeEEEEECCCCC
Confidence 443 368888876553
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.18 E-value=7.4e-10 Score=117.62 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=68.0
Q ss_pred eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC
Q 004149 310 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 310 ~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
..|..+...+.+.+|||||++|+...... ........|.+||+++++.... +.++-.... .+ ....
T Consensus 297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~----~s~~~~~tv~vwd~~t~~~~~~------~~~~~~~~~---~~-~~~~ 362 (426)
T d1hzua2 297 AELQGQGGGSLFIKTHPKSSHLYVDTTFN----PDARISQSVAVFDLKNLDAKYQ------VLPIAEWAD---LG-EGAK 362 (426)
T ss_dssp EEEECSSSCCCCEECCTTCSEEEECCTTC----SSHHHHTCEEEEETTCTTSCCE------EECHHHHHC---CC-SSCC
T ss_pred EEEecCCCceeEEEcCCCCceEEEeecCC----CCcccCCEEEEEECCCCCcCeE------Eeccchhcc---cC-CCCc
Confidence 34444555678899999999998643221 1112235689999988764221 111000000 00 0011
Q ss_pred CCCCCccccCCCEEEEEeee--CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCE
Q 004149 390 SILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 446 (771)
Q Consensus 390 ~~~~~~~s~dg~~l~~~~~~--~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~ 446 (771)
.+..++|||||++|+++... .....|..+|.+|+++........ .++|+|++
T Consensus 363 rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~-----~~tp~Gk~ 416 (426)
T d1hzua2 363 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR-----LITPTGKF 416 (426)
T ss_dssp CEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEEEE
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC-----ccCCCceE
Confidence 23356799999999887532 234457778999999877655432 34566654
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.15 E-value=1.2e-11 Score=119.44 Aligned_cols=201 Identities=10% Similarity=0.015 Sum_probs=109.6
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.++.++||++||.+++ ...|..++..|. +|.|+++|++|. +. .++++.+.+..+ .
T Consensus 14 ~~~~~~l~~lhg~~g~--~~~~~~la~~L~--~~~v~~~~~~g~---~~-------------~a~~~~~~i~~~-----~ 68 (230)
T d1jmkc_ 14 QDQEQIIFAFPPVLGY--GLMYQNLSSRLP--SYKLCAFDFIEE---ED-------------RLDRYADLIQKL-----Q 68 (230)
T ss_dssp TTCSEEEEEECCTTCC--GGGGHHHHHHCT--TEEEEEECCCCS---TT-------------HHHHHHHHHHHH-----C
T ss_pred CCCCCeEEEEcCCCCC--HHHHHHHHHHCC--CCEEeccCcCCH---HH-------------HHHHHHHHHHHh-----C
Confidence 3456899999997766 457888888883 799999999983 21 245555554433 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCc---eeEEEecCCccchhh--hhcCCCCCcchhhhhccCCCCCcCCCCCChhhH
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDK---FVAAAARNPLCNLAL--MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDL 688 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~---~~a~v~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (771)
...++.|+||||||.+++.+|.++|++ +..++...+...... .................. ...........
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 144 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNR----DNEALNSEAVK 144 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTT----TCSGGGSHHHH
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhccc----cccccccHHHH
Confidence 346799999999999999999876543 444444333211100 000000000000000000 00000011110
Q ss_pred HH--------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC-CChHHHH
Q 004149 689 TR--------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP-QSDFESF 759 (771)
Q Consensus 689 ~~--------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~-~~~~~~~ 759 (771)
.. +...........+++|+++++|++|..++... ..+.+ ....+++++.+++ +|..... +...++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~~~~-~~w~~---~~~~~~~~~~i~g-~H~~ml~~~~~~~va 219 (230)
T d1jmkc_ 145 HGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWL-ASWEE---ATTGAYRMKRGFG-THAEMLQGETLDRNA 219 (230)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTTE-ECSGG---GBSSCEEEEECSS-CGGGTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccchhH-HHHHH---hccCCcEEEEEcC-CChhhcCCccHHHHH
Confidence 00 01111123456788999999999999987542 11111 1223588888975 8975433 2224455
Q ss_pred HHHHHHHHH
Q 004149 760 LNIGLWFKK 768 (771)
Q Consensus 760 ~~i~~wl~~ 768 (771)
+.|.+||++
T Consensus 220 ~~I~~~L~~ 228 (230)
T d1jmkc_ 220 GILLEFLNT 228 (230)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 566666653
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.14 E-value=1.6e-11 Score=122.54 Aligned_cols=218 Identities=12% Similarity=0.072 Sum_probs=121.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcC
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~ 611 (771)
.....|.+|++||.........|..++..|.. ++.|+++|++| +|.+... ........++++.+. ++.+...
T Consensus 56 ~~~~~~~l~c~~~~~~~g~~~~y~~la~~L~~-~~~V~al~~pG---~~~~~~~--~~~~~~~s~~~~a~~~~~~i~~~- 128 (283)
T d2h7xa1 56 RAEGRAVLVGCTGTAANGGPHEFLRLSTSFQE-ERDFLAVPLPG---YGTGTGT--GTALLPADLDTALDAQARAILRA- 128 (283)
T ss_dssp --CCCCEEEEECCCCTTCSTTTTHHHHHTTTT-TCCEEEECCTT---CCBC-----CBCCEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCC---CCCCCCC--ccccccCCHHHHHHHHHHHHHHh-
Confidence 34567889999984322224567778888754 69999999999 4432110 111222345555543 3444443
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhC----CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhh
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
....++.|+||||||.+++.+|.+. +..+.++++..+.......... .. .......... ...... ....
T Consensus 129 -~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~-~~-~~~~~~~~~~---~~~~~~-~~~~ 201 (283)
T d2h7xa1 129 -AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIE-VW-SRQLGEGLFA---GELEPM-SDAR 201 (283)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHH-HT-HHHHHHHHHH---TCSSCC-CHHH
T ss_pred -cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchh-hh-hhhhHHHhhc---cccccc-ccHH
Confidence 2346799999999999999988764 4568888887664321100000 00 0000000000 000000 1111
Q ss_pred H---HHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004149 688 L---TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 688 ~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
. ..+...........+++|+++++|++|..++.+....+.+.+ ...++++.+++ +|.....++...+.+.|.+
T Consensus 202 l~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w~~~~---~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~ 277 (283)
T d2h7xa1 202 LLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHW---DLPHTVADVPG-DHFTMMRDHAPAVAEAVLS 277 (283)
T ss_dssp HHHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCCSCCC---SSCSEEEEESS-CTTHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEEcC-CCcccccCCHHHHHHHHHH
Confidence 1 111111111234678899999999999999877655433222 23468888987 7864333556677788999
Q ss_pred HHHH
Q 004149 765 WFKK 768 (771)
Q Consensus 765 wl~~ 768 (771)
||+.
T Consensus 278 ~L~~ 281 (283)
T d2h7xa1 278 WLDA 281 (283)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9975
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=9.1e-10 Score=114.85 Aligned_cols=261 Identities=15% Similarity=0.063 Sum_probs=134.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcc---------cccccCCCcccceeecCCCCeE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTV---------HGSVYADGWFEGISWNSDETLI 167 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~wSpDg~~l 167 (771)
+.+...+|||||++||...+ + ...+| ..++........... ......+..+.+++|||||+.|
T Consensus 63 ~~V~~l~fs~dg~~lasg~d---~---~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGCN---K---TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp SCCCEEEECTTSSEEEEECB---S---CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCEEEEEeC---C---eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 45888999999999886432 2 24555 223222222110000 0000112334689999999999
Q ss_pred EEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEE
Q 004149 168 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 247 (771)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~w 247 (771)
+..+.+...+ .|+............+........+.++....+.+.....+.+||..+...... ...........|
T Consensus 137 ~s~~~dg~v~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~ 212 (388)
T d1erja_ 137 ATGAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAV 212 (388)
T ss_dssp EEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEE
T ss_pred eecccccccc--cccccccccccccccccccccccccccccccccccccceeeeeeeccccccccc--cccccccccccc
Confidence 9887665432 222111111111111222223344566655555566678899999988776555 233333444555
Q ss_pred ec-CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-cee-------cCCCCcc
Q 004149 248 AP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN-------LTESISS 318 (771)
Q Consensus 248 sp-Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-------lt~~~~~ 318 (771)
+| |++. |+..+ .+..|+++++ .++. ... +..+...
T Consensus 213 ~~~~~~~----l~~~~---------------~d~~i~i~~~-----------------~~~~~~~~~~~~~~~~~~h~~~ 256 (388)
T d1erja_ 213 SPGDGKY----IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDS 256 (388)
T ss_dssp CSTTCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSSC
T ss_pred cCCCCCe----EEEEc---------------CCCeEEEeec-----------------ccCccceeeccccccccCCCCC
Confidence 55 6664 55444 2235777776 3332 122 2233456
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee--EEecccccCCCCCcccccCCCCCCcc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD--VIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
+....|+|||+.|+..+.+ ..|.+||+.++........... ...... .+...+..++|
T Consensus 257 v~~l~~s~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~ 316 (388)
T d1erja_ 257 VYSVVFTRDGQSVVSGSLD-----------RSVKLWNLQNANNKSDSKTPNSGTCEVTYI---------GHKDFVLSVAT 316 (388)
T ss_dssp EEEEEECTTSSEEEEEETT-----------SEEEEEEC---------------CEEEEEE---------CCSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECC-----------CcEEEEeccCCccccccccccccceeeecc---------cccceEEEEEE
Confidence 7889999999998876654 2588888876554322111100 000000 01113456789
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 397 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 397 s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
+|||+.|+ +...++. |+.+|+.+++....
T Consensus 317 s~~~~~l~-sg~~dg~--i~vwd~~~~~~~~~ 345 (388)
T d1erja_ 317 TQNDEYIL-SGSKDRG--VLFWDKKSGNPLLM 345 (388)
T ss_dssp CGGGCEEE-EEETTSE--EEEEETTTCCEEEE
T ss_pred CCCCCEEE-EEeCCCE--EEEEECCCCcEEEE
Confidence 99998664 4444554 55568888876544
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.12 E-value=2.8e-11 Score=120.57 Aligned_cols=129 Identities=15% Similarity=0.099 Sum_probs=82.9
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEE-ecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhh-H
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-L 688 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 688 (771)
..+|++||+|+|+|+||++|+.++..+|+.|++++ ..++.... ...+ ......... .......... .
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~----ca~~---~~~~~~~~~----~~~~~~~~~~~~ 74 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYD----CARN---QYYTSCMYN----GYPSITTPTANM 74 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTT----TTSS---SCGGGGSTT----CCCCCHHHHHHH
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchh----hhcc---cchHHHhhc----CCCCCcChhHHH
Confidence 34899999999999999999999999999996433 33332100 0000 000000000 0000001111 2
Q ss_pred HHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC--CEEEEEeCCCCccCC
Q 004149 689 TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIE 750 (771)
Q Consensus 689 ~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~ 750 (771)
..+...++.......+.|+||+||++|.+||+.+++.++++|++.+. +++++.+++++|.+.
T Consensus 75 ~~~~~~~i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 75 KSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp HHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEE
T ss_pred HHHhhcCCcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCC
Confidence 22223333333444568999999999999999999999999988644 689999999999874
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.11 E-value=5.7e-09 Score=107.16 Aligned_cols=271 Identities=11% Similarity=0.019 Sum_probs=143.4
Q ss_pred ecCCCCcceEEEEEeech-hhcccceeEEEEEEeecCCCCccceeecCC-c--cccccceEEEeCCCCCeEEEEecCCCC
Q 004149 47 NSGNGNGTQAMFSISQPN-LLANKRKKFMLSTVISKENENSVTFQWAPF-P--VEMTGASAVVPSPSGSKLLVVRNPENE 122 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-~--~~~~~~~~~~~SPdG~~la~~~~~~~~ 122 (771)
...||||++|++...... .........++++|+... +.+.....+. . .........+|||||+++++.....
T Consensus 52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-- 127 (355)
T d2bbkh_ 52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-- 127 (355)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--
T ss_pred eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC--CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC--
Confidence 356899999987654322 222334567777765332 3222111110 0 0011234578999999997765432
Q ss_pred CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004149 123 SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 123 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
...+...+ ..+...+.+...... .++..+....+.+++||+.+++.....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~~~~v~~~~~--------------------------- 178 (355)
T d2bbkh_ 128 APAVGVVDLEGKAFKRMLDVPDCY--HIFPTAPDTFFMHCRDGSLAKVAFGTE--------------------------- 178 (355)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEE--EEEEEETTEEEEEETTSCEEEEECCSS---------------------------
T ss_pred CceeeeeecCCCcEeeEEecCCcc--eEeecCCcceEEEcCCCCEEEEEecCC---------------------------
Confidence 22333333 344444444332211 111222224678999998877653221
Q ss_pred ccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 202 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
..+.+++..+... ..........+++++.. +++.+ ....
T Consensus 179 ----------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~---------------~~~~ 217 (355)
T d2bbkh_ 179 ----------------GTPEITHTEVFHP------EDEFLINHPAYSQKAGR----LVWPT---------------YTGK 217 (355)
T ss_dssp ----------------SCCEEEECCCCSC------TTSCBCSCCEEETTTTE----EEEEB---------------TTSE
T ss_pred ----------------CeEEEEecccccc------eecceeeeccccCCCCe----EEEec---------------CCCe
Confidence 2233344333221 11122344577888887 88775 2236
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCC-------------CccccceeecCCCCEEEEEecCCCCCCCCcccc
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
++++++ .++....+... ........++|||+.+++......... .....
T Consensus 218 ~~v~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~ 279 (355)
T d2bbkh_ 218 IHQIDL-----------------SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR-HKTAS 279 (355)
T ss_dssp EEEEEC-----------------TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC-TTSCE
T ss_pred EEEEec-----------------CCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee-ecCCC
Confidence 777776 33433222110 112345789999999887766542110 01223
Q ss_pred ccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 349 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
..|+++|..+++........ ..+..++|||||+.+++.+.. ....|+.+|+.+|++.+-
T Consensus 280 ~~v~v~d~~t~~~~~~~~~~--------------------~~~~~~a~spDG~~~l~v~~~-~d~~i~v~D~~tg~~~~~ 338 (355)
T d2bbkh_ 280 RFVVVLDAKTGERLAKFEMG--------------------HEIDSINVSQDEKPLLYALST-GDKTLYIHDAESGEELRS 338 (355)
T ss_dssp EEEEEEETTTCCEEEEEEEE--------------------EEECEEEECCSSSCEEEEEET-TTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeCCCCcEEEEecCC--------------------CCEEEEEEcCCCCeEEEEEEC-CCCEEEEEECCCCCEEEE
Confidence 57899998876642111000 013467899999976665542 335688889999987654
Q ss_pred cC
Q 004149 429 TP 430 (771)
Q Consensus 429 ~~ 430 (771)
..
T Consensus 339 i~ 340 (355)
T d2bbkh_ 339 VN 340 (355)
T ss_dssp EC
T ss_pred Ee
Confidence 33
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=1.9e-09 Score=108.06 Aligned_cols=278 Identities=10% Similarity=0.060 Sum_probs=150.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||+.||..+.++ .+.+| ..++..+.+.... + .+..+.|+|++..++........
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~h~---~------~V~~~~~~~~~~~~~~~~~~~~~ 83 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKGHT---D------SVQDISFDHSGKLLASCSADMTI 83 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECCCS---S------CEEEEEECTTSSEEEEEETTSCC
T ss_pred CCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCEEEEEeCCC---C------cEEEEeeeccccccccccccccc
Confidence 5688999999999998766543 45666 3444444433211 1 22689999999999887655433
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.. +......................+.++....++......+.+||+.+++..... ......+..+.|+||++.
T Consensus 84 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 157 (317)
T d1vyhc1 84 KL--WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL--- 157 (317)
T ss_dssp CE--EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE---
T ss_pred cc--ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCE---
Confidence 21 111111111111112222234446666555556666789999999988764441 233445678899999986
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+ .+..|..+++ ..++ ...+......+....|+|++..+....
T Consensus 158 -l~~~~---------------~d~~v~~~~~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 204 (317)
T d1vyhc1 158 -IASCS---------------NDQTVRVWVV-----------------ATKECKAELREHRHVVECISWAPESSYSSISE 204 (317)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred -EEEEe---------------CCCeEEEEee-----------------ccceeeEEEecCCCCceEEEEeeccccceeec
Confidence 66554 2235667776 3332 333444444455556666554321111
Q ss_pred cCCCCCC-----CC----ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEE
Q 004149 336 AKSSVDS-----GA----HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 336 ~~~~~~~-----g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~ 406 (771)
....... +. ......|.++|+.++..... +.. +...+..++|+|+++.|+ +
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~----------~~~---------~~~~v~~~~~~~~~~~l~-s 264 (317)
T d1vyhc1 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----------LVG---------HDNWVRGVLFHSGGKFIL-S 264 (317)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE----------EEC---------CSSCEEEEEECSSSSCEE-E
T ss_pred cccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE----------EeC---------CCCCEEEEEECCCCCEEE-E
Confidence 1000000 00 00113467777766543111 000 011234678999998664 4
Q ss_pred eeeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEE
Q 004149 407 SIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
...++. |..+|+.+++.. .+......+....|+++++.|+...
T Consensus 265 ~~~dg~--i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 265 CADDKT--LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308 (317)
T ss_dssp EETTTE--EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred EECCCe--EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 444555 445577777644 3433344455567888888776544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.10 E-value=7.2e-09 Score=105.14 Aligned_cols=263 Identities=10% Similarity=0.007 Sum_probs=139.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+++||||++++.....+ ..+..++ ..++............ .......++|||||++++..........
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~---~~v~v~D~~t~~~~~~~~~~~~~~----~~~~~~~v~~s~dg~~l~~~~~~~~~~~ 107 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKS---ESLVKIDLVTGETLGRIDLSTPEE----RVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTT---TEEEEEETTTCCEEEEEECCBTTE----EEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccEEEECCCCCEEEEEECCC---CeEEEEECCCCcEEEEEecCCCcc----cccceeeEEEcCCCcEEEEeecCCccee
Confidence 356789999999886543322 2455555 4555554444322110 0011247899999999987754332110
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.........+.++|..+++.... .+....+..++|+|||+. +
T Consensus 108 --------------------------------~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 149 (337)
T d1pbyb_ 108 --------------------------------THFEVQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSK----L 149 (337)
T ss_dssp --------------------------------SCEEECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSC----E
T ss_pred --------------------------------eeccccccceeeccccCCeEEEe--ccccCCceEEEEcCCCCE----E
Confidence 00011346889999999887666 444455778899999998 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC-
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK- 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~- 337 (771)
+..+. .++.+|. .+++...............++|++..+......
T Consensus 150 ~~~~~-----------------~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
T d1pbyb_ 150 YGLGR-----------------DLHVMDP-----------------EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEESS-----------------SEEEEET-----------------TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred EEEcC-----------------Ccceeee-----------------ecCcEEEEeecCCccccceecCCcceeecccccc
Confidence 76541 3455565 333322211112222333445555433211110
Q ss_pred ------------CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 338 ------------SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 338 ------------~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
.............+.++++.++......... . ........+++++..++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--------~~~~~~~~~~~~~~~~~~ 257 (337)
T d1pbyb_ 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----------M--------DVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----------C--------SSCEEEEEECTTSSEEEE
T ss_pred ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----------C--------CcceEEEEecccceEEEE
Confidence 0000000111223555555544321100000 0 001224467888886654
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 406 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
.. ..|..+|+.+++...............|++||+.|+.... -..|.+.+..+.
T Consensus 258 ~~-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~----~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 258 AY-----NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA----LGDLAAYDAETL 311 (337)
T ss_dssp EE-----SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB----SSEEEEEETTTC
T ss_pred cc-----ccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeC----CCcEEEEECCCC
Confidence 32 3577789999886655444444556789999998876532 245888886544
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=99.09 E-value=6.3e-11 Score=120.83 Aligned_cols=116 Identities=23% Similarity=0.283 Sum_probs=76.8
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcch-HH---HHHHHHCCcEEEEECCCCCCCCChhhhhcCC----------CCccccchh
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYS-KS---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLP----------GKVGSQDVN 598 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~-~~---~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~----------~~~~~~~~~ 598 (771)
...+.++||++|+..++.....|. .+ -..+--..|-||++|..|++ +|.+...... ..+....+.
T Consensus 40 n~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~-~gst~p~s~~p~~~~~~~yg~~FP~~ti~ 118 (376)
T d2vata1 40 NVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGPCSPDPDAEGQRPYGAKFPRTTIR 118 (376)
T ss_dssp CTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSSTTSBCTTTC--CBCGGGCCCCCHH
T ss_pred CCCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCC-cCCCCCCCCCcccccCCcccccCCcchhH
Confidence 345679999999955443322331 11 12233356999999999864 3332221111 112234678
Q ss_pred hHHHHHHHHHHcCCCCCCeE-EEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 599 DVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
|+.++-..|.+.- .-+++ +|+|.||||+.|+..|.++|+++..+|.++...
T Consensus 119 D~v~aq~~ll~~L--GI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~ 170 (376)
T d2vata1 119 DDVRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSC 170 (376)
T ss_dssp HHHHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCS
T ss_pred HHHHHHHHHHHHh--CcceEEEeecccHHHHHHHHHHHhchHHHhhhccccccc
Confidence 9998877777763 34565 699999999999999999999998888777643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.2e-09 Score=111.14 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=40.6
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec--CCCCCceeeEEeecCCEEEEEE
Q 004149 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 393 ~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~--~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
...+++|++++++.....+...+|.++.+++..+... ..........|+|||++|+.+.
T Consensus 234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~ 294 (333)
T d1ri6a_ 234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 294 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred eEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence 3568999998887777777888998887665544332 2222234568999999987553
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=2.3e-09 Score=111.74 Aligned_cols=256 Identities=10% Similarity=0.008 Sum_probs=132.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+|||||++|+.....+ .+.+|+......+.... ...+ .+..+.|++++..++..+......
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~~~~~~~~~~i~- 188 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAEDR-----LIRIWDIENRKIVMILQ-GHEQ------DIYSLDYFPSGDKLVSGSGDRTVR- 188 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC-CCSS------CEEEEEECTTSSEEEEEETTSEEE-
T ss_pred CCEEEEEECCCCCcceeccccc-----ccccccccccccccccc-cccc------cccccccccccccccccccceeee-
Confidence 3477899999999998766543 45566322222222221 1111 125889999999888876544221
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceeec-c-----CCCCCCccceEEEecCC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQAV-K-----GIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l-~-----~~~~~~~~~~~~wspDg 251 (771)
.|+......... ...........+.+ +....+++.....|+++|+.++..... . .......+..+.|+|||
T Consensus 189 -~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 189 -IWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp -EEETTTTEEEEE-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred -eeeccccccccc-cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence 121110000000 00001111112222 322233345567899999988765332 1 01123357789999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCE
Q 004149 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
+. |+..+ ....|.++|+....... .......+ .......+...+....|||||+.
T Consensus 267 ~~----l~s~~---------------~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 322 (388)
T d1erja_ 267 QS----VVSGS---------------LDRSVKLWNLQNANNKS-----DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322 (388)
T ss_dssp SE----EEEEE---------------TTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCE
T ss_pred CE----EEEEE---------------CCCcEEEEeccCCcccc-----ccccccccceeeecccccceEEEEEECCCCCE
Confidence 97 77655 22356677762110000 00000011 11222334456788999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee-eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV-DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~ 409 (771)
|+..+.+ ..|++||+.+++......+.. .+..+. ......|+||++. +++...
T Consensus 323 l~sg~~d-----------g~i~vwd~~~~~~~~~l~~H~~~V~~~~--------------~~~~~~~spd~~~-l~s~s~ 376 (388)
T d1erja_ 323 ILSGSKD-----------RGVLFWDKKSGNPLLMLQGHRNSVISVA--------------VANGSSLGPEYNV-FATGSG 376 (388)
T ss_dssp EEEEETT-----------SEEEEEETTTCCEEEEEECCSSCEEEEE--------------ECSSCTTCTTCEE-EEEEET
T ss_pred EEEEeCC-----------CEEEEEECCCCcEEEEEeCCCCCEEEEE--------------EecCcccCCCCCE-EEEEeC
Confidence 8876654 258999998776432111110 111000 1134579999974 466677
Q ss_pred CCeeEEEEEE
Q 004149 410 GSSQVIISVN 419 (771)
Q Consensus 410 ~~~~~l~~~d 419 (771)
++...||.+.
T Consensus 377 Dg~I~iW~~~ 386 (388)
T d1erja_ 377 DCKARIWKYK 386 (388)
T ss_dssp TSEEEEEEEE
T ss_pred CCEEEEEeee
Confidence 7888888653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.06 E-value=1.2e-08 Score=105.72 Aligned_cols=169 Identities=14% Similarity=0.047 Sum_probs=102.2
Q ss_pred ceEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....++||||+++++..... ....++|.++ ..++....+..... ..+.|||||++|++.......
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~-----------~~~a~SpDG~~l~va~~~~~~-- 89 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-----------PNPVAAHSGSEFALASTSFSR-- 89 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC-----------ccEEEcCCCCEEEEEeecCCc--
Confidence 56678999999996653322 1345688887 55554444332211 378999999999987544311
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC------CccceEEEecCCC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS------LSVGQVVWAPLNE 252 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~------~~~~~~~wspDg~ 252 (771)
...+.....|.+||+.++++......+.. .......|+|||+
T Consensus 90 --------------------------------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 137 (373)
T d2madh_ 90 --------------------------------IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred --------------------------------ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence 11122456899999999987654212211 1235678999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. +++..+.. ...+..++. .+.+... .........++|||+.++
T Consensus 138 ~----~~v~~~~~-------------~~~~~~~~~-----------------~~~~~~~---~~~~~~~~~~s~~g~~~~ 180 (373)
T d2madh_ 138 D----LLFFQFAA-------------GPAVGLVVQ-----------------GGSSDDQ---LLSSPTCYHIHPGAPSTF 180 (373)
T ss_pred c----EEEEEEcC-------------CCceEEeec-----------------cCCeEEE---EeccceeEEEecCCCcEE
Confidence 8 87765322 224555554 3333221 122345678999999876
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+....+ ..+.+++..++..
T Consensus 181 v~~~~d----------g~~~~~~~~~~~~ 199 (373)
T d2madh_ 181 YLLCAQ----------GGLAKTDHAGGAA 199 (373)
T ss_pred EEEcCC----------CeEEEEEcCCcee
Confidence 554443 3577888776554
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=99.05 E-value=5.2e-10 Score=111.08 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.+.| ||++||.+.......|......|+++||.|+.+|++|. |... .....+++.++++++.+.. .
T Consensus 30 ~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~---g~~d--------~~~sae~la~~i~~v~~~~--g 95 (317)
T d1tcaa_ 30 VSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF---MLND--------TQVNTEYMVNAITALYAGS--G 95 (317)
T ss_dssp CSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTT---TCSC--------HHHHHHHHHHHHHHHHHHT--T
T ss_pred CCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCC---CCCc--------hHhHHHHHHHHHHHHHHhc--c
Confidence 3445 78899965443222345678899999999999999983 2211 1223677888889888763 3
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCcc
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 651 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~ 651 (771)
.++|.|+||||||.++.+++..+| ++++.+|.+++..
T Consensus 96 ~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~ 135 (317)
T d1tcaa_ 96 NNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY 135 (317)
T ss_dssp SCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCT
T ss_pred CCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCC
Confidence 578999999999999999999887 4688888888754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.04 E-value=6.9e-09 Score=105.73 Aligned_cols=305 Identities=8% Similarity=-0.012 Sum_probs=155.5
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
|+.+++|++++.... .+.|.++|+.+. +...-. .++. .......+|||||++++.....+ ..+
T Consensus 2 ~a~~~~~~~l~~~~~---------~~~v~v~D~~t~--~~~~t~--~~~~-~~~p~~l~~spDG~~l~v~~~~~---~~v 64 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNY---------PNNLHVVDVASD--TVYKSC--VMPD-KFGPGTAMMAPDNRTAYVLNNHY---GDI 64 (346)
T ss_dssp CCCCTTCEEEEEEET---------TTEEEEEETTTT--EEEEEE--ECSS-CCSSCEEEECTTSSEEEEEETTT---TEE
T ss_pred ccCCCCCcEEEEEcC---------CCEEEEEECCCC--CEEEEE--EcCC-CCCcceEEECCCCCEEEEEECCC---CcE
Confidence 456789988887542 247788777433 222111 1111 12356899999999886543322 345
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
..++ ..++............+.. .....+.|||||++|+..........
T Consensus 65 ~~~d~~t~~~~~~~~~~~~~~~~~---~~~~~v~~s~DG~~l~v~~~~~~~~~--------------------------- 114 (346)
T d1jmxb_ 65 YGIDLDTCKNTFHANLSSVPGEVG---RSMYSFAISPDGKEVYATVNPTQRLN--------------------------- 114 (346)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEE---ECSSCEEECTTSSEEEEEEEEEEECS---------------------------
T ss_pred EEEeCccCeeeeeecccccccccC---CceEEEEEecCCCEEEEEecCCccee---------------------------
Confidence 5544 4444444443322111000 01147899999998876654321100
Q ss_pred CCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 206 EDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
.........+.++|..+++..... ............+++|++ ++..+ ..+..
T Consensus 115 -----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------------~~~~~ 167 (346)
T d1jmxb_ 115 -----DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-----LYVAG-----------------PDIYK 167 (346)
T ss_dssp -----SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-----EEEES-----------------SSEEE
T ss_pred -----eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE-----EEEeC-----------------CcceE
Confidence 000113467888998877643321 011122344456677765 43332 14666
Q ss_pred EecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCC---------------CCccccc
Q 004149 285 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDS---------------GAHSATD 349 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~---------------g~~~~~~ 349 (771)
+++ .+++...............++|+|+.++.......... -......
T Consensus 168 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 168 MDV-----------------KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp ECT-----------------TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred EEc-----------------cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 666 44443332223334566778888887643332210000 0000112
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.+.++|+.++........ + .........+++++..+++... ..+..+|..+++..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~----~~v~v~d~~~~~~~~~~ 288 (346)
T d1jmxb_ 231 GYLSVDLKTGKTHTQEFA----------D--------LTELYFTGLRSPKDPNQIYGVL----NRLAKYDLKQRKLIKAA 288 (346)
T ss_dssp EEEEEETTTCCEEEEEEE----------E--------CSSCEEEEEECSSCTTEEEEEE----SEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCceEEEEee----------c--------ccceeEEEEEeCCCCEEEEecC----CeEEEEECCCCcEEEEE
Confidence 234444443332110000 0 0011234567788877765443 25777899998876554
Q ss_pred CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 430 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 430 ~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
..........|++||++|+....+ ..|.+.+..+.
T Consensus 289 ~~~~~~~~va~s~DG~~l~v~~~d----~~v~v~D~~t~ 323 (346)
T d1jmxb_ 289 NLDHTYYCVAFDKKGDKLYLGGTF----NDLAVFNPDTL 323 (346)
T ss_dssp ECSSCCCEEEECSSSSCEEEESBS----SEEEEEETTTT
T ss_pred cCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECccC
Confidence 433345668999999988765432 36888886544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.02 E-value=9.2e-09 Score=102.81 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=102.5
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
......|||||+.++..... ...+|+.++...+. ..... ..++|+||++.|+....
T Consensus 101 ~~~~~~~s~~g~~~~~~~~~------~i~~~~~~~~~~~~-~~~~~----------~~~~~s~~~~~l~~g~~------- 156 (299)
T d1nr0a2 101 QPLGLAVSADGDIAVAACYK------HIAIYSHGKLTEVP-ISYNS----------SCVALSNDKQFVAVGGQ------- 156 (299)
T ss_dssp CEEEEEECTTSSCEEEEESS------EEEEEETTEEEEEE-CSSCE----------EEEEECTTSCEEEEEET-------
T ss_pred cccccccccccccccccccc------cccccccccccccc-ccccc----------ccccccccccccccccc-------
Confidence 45678899999987665432 34555443332222 12222 47899999998887532
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
...|.+||+.+++...+........+..++|+||++. |+
T Consensus 157 -------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~ 195 (299)
T d1nr0a2 157 -------------------------------------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF----LV 195 (299)
T ss_dssp -------------------------------------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE----EE
T ss_pred -------------------------------------ccccccccccccccccccccccccccccccccccccc----cc
Confidence 3678999999887655421334456788999999987 76
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceecCCCCccccceeecCCCCEEEEEe
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
..+ ....|+++|+ .++. ...+..+...+....|+|||+.|+..+
T Consensus 196 ~~~---------------~d~~i~~~~~-----------------~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs 243 (299)
T d1nr0a2 196 ATD---------------QSRKVIPYSV-----------------ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243 (299)
T ss_dssp EEE---------------TTSCEEEEEG-----------------GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccc---------------cccccccccc-----------------cccccccccccccccccccccccccccccceEEEc
Confidence 654 2346888887 3322 223344455678899999999998777
Q ss_pred cCCCCCCCCccccccceeeecCCCCC
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.+. .|++||+.++..
T Consensus 244 ~dg-----------~i~iwd~~~~~~ 258 (299)
T d1nr0a2 244 LDN-----------SVIVWNMNKPSD 258 (299)
T ss_dssp TTS-----------CEEEEETTCTTS
T ss_pred CCC-----------EEEEEECCCCCc
Confidence 653 488999887654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.01 E-value=1.1e-08 Score=103.67 Aligned_cols=268 Identities=12% Similarity=0.095 Sum_probs=139.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++||..+..+ .+.+|+ .++....+..... .+..++|+|||+.|+..+.+...
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg-----~v~iWd~~~~~~~~~~~~~~~---------~v~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPLRSS---------WVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTTEEEEEEECSCS---------CEEEEEECTTSSEEEEEETTCCE
T ss_pred CCEEEEEECCCCCEEEEEECCC-----ceeeeecccceeEEEEecccc---------cEEeeEeeccceeeeeeccccee
Confidence 4588999999999998776544 577773 3333333332111 22689999999999988766532
Q ss_pred CCCCccCCCCCCCCC----CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 177 SKPTFSLGSTKGGSS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.. +.......... ...+...........+ ..............+........... ......+....+.+++.
T Consensus 122 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 197 (340)
T d1tbga_ 122 SI--YNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EE--EESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSS
T ss_pred ec--ccccccccccccceecccccccccccccccc-cccccccccccccccccccccccccc-cccceeEeeeccccccc
Confidence 21 11000000000 0000000000000000 00001111222333333332222211 12222344556666665
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
. ++... ....|.++|+ ..++ ...+..+...+.+.+|+|||+.|
T Consensus 198 ~----~~~~~---------------~d~~v~i~d~-----------------~~~~~~~~~~~h~~~i~~v~~~p~~~~l 241 (340)
T d1tbga_ 198 L----FVSGA---------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp E----EEEEE---------------TTTEEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred e----eEEee---------------cCceEEEEEC-----------------CCCcEEEEEeCCCCCeEEEEECCCCCEE
Confidence 3 33322 3347888887 4444 45566667778899999999998
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+..+.+. .|.++|+.......... . .. ....+..++|+||++.|+ +...++
T Consensus 242 ~s~s~d~-----------~i~~~~~~~~~~~~~~~----------~--~~-----~~~~i~~~~~s~~~~~l~-~g~~dg 292 (340)
T d1tbga_ 242 ATGSDDA-----------TCRLFDLRADQELMTYS----------H--DN-----IICGITSVSFSKSGRLLL-AGYDDF 292 (340)
T ss_dssp EEEETTS-----------CEEEEETTTTEEEEEEC----------C--TT-----CCSCEEEEEECSSSCEEE-EEETTS
T ss_pred EEEeCCC-----------eEEEEeecccccccccc----------c--cc-----ccCceEEEEECCCCCEEE-EEECCC
Confidence 8776553 47888876644311100 0 00 001244678999998664 445455
Q ss_pred eeEEEEEECCCCcEEEecCC-CCCceeeEEeecCCEEEEEE
Q 004149 412 SQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~d~~~l~~~~ 451 (771)
. |..+|+.+++....... ...+....|+++++.|+...
T Consensus 293 ~--i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s 331 (340)
T d1tbga_ 293 N--CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp C--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred E--EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc
Confidence 5 44558888876655443 34455667888888766543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.00 E-value=4.4e-08 Score=103.63 Aligned_cols=198 Identities=9% Similarity=-0.049 Sum_probs=112.2
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe
Q 004149 51 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW 130 (771)
Q Consensus 51 ~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~ 130 (771)
.|...+.+..... .+.+.++|..+. +...-...+ ......+|||||++++..+.. + .+.+++
T Consensus 28 ~~~~~~~~v~~~d-------~g~v~v~D~~t~--~v~~~~~~g-----~~~~~v~fSpDG~~l~~~s~d--g--~v~~~d 89 (432)
T d1qksa2 28 WDLENLFSVTLRD-------AGQIALIDGSTY--EIKTVLDTG-----YAVHISRLSASGRYLFVIGRD--G--KVNMID 89 (432)
T ss_dssp CCGGGEEEEEETT-------TTEEEEEETTTC--CEEEEEECS-----SCEEEEEECTTSCEEEEEETT--S--EEEEEE
T ss_pred CCCCcEEEEEEcC-------CCEEEEEECCCC--cEEEEEeCC-----CCeeEEEECCCCCEEEEEcCC--C--CEEEEE
Confidence 3555565544332 356777765322 332211122 346788999999999765432 2 233333
Q ss_pred -cCCcceEEEec--CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004149 131 -SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 131 -~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
..++...+..+ .....+.+ .++.|||||++|+..+..
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~------~s~~~SpDG~~l~vs~~~---------------------------------- 129 (432)
T d1qksa2 90 LWMKEPTTVAEIKIGSEARSIE------TSKMEGWEDKYAIAGAYW---------------------------------- 129 (432)
T ss_dssp TTSSSCCEEEEEECCSEEEEEE------ECCSTTCTTTEEEEEEEE----------------------------------
T ss_pred eeCCCceEEEEEecCCCCCCeE------EecccCCCCCEEEEEcCC----------------------------------
Confidence 33443333322 22222111 366799999988765432
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCC----------CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeecc
Q 004149 208 WGETYAGKRQPSLFVININSGEVQAVKGIP----------KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~----------~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
...+.+||.+++++....... .......+.+||||+. +++...
T Consensus 130 ---------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~----~~vs~~-------------- 182 (432)
T d1qksa2 130 ---------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE----FIVNVK-------------- 182 (432)
T ss_dssp ---------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE----EEEEET--------------
T ss_pred ---------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE----EEEEEc--------------
Confidence 367899999998876652010 0112234577888886 665542
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
....|+.++. .+.+...+. ..........|||||++++..+... ..+.++|
T Consensus 183 ~~~~i~~~d~-----------------~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~----------~~v~v~d 235 (432)
T d1qksa2 183 ETGKILLVDY-----------------TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR----------NKLVVID 235 (432)
T ss_dssp TTTEEEEEET-----------------TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG----------TEEEEEE
T ss_pred cCCeEEEEEc-----------------cCCCcceEEEEcccCccccceECCCCCEEEEecccc----------ceEEEee
Confidence 2347888887 443322221 1223456789999999988777553 4677888
Q ss_pred cCCCC
Q 004149 356 WPTNG 360 (771)
Q Consensus 356 ~~~~~ 360 (771)
..++.
T Consensus 236 ~~~~~ 240 (432)
T d1qksa2 236 TKEGK 240 (432)
T ss_dssp TTTTE
T ss_pred cccce
Confidence 76644
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=4.4e-09 Score=105.29 Aligned_cols=285 Identities=11% Similarity=0.024 Sum_probs=154.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+|||..|+-. ..++.+.+|++.... ....+.. ....+....|+|+|..++...... ...+
T Consensus 26 sp~~~~l~s~---------s~Dg~i~iWd~~~~~-~~~~~~~-----h~~~V~~~~~~~~~~~~~~~~~~~-----~~~~ 85 (317)
T d1vyhc1 26 HPVFSVMVSA---------SEDATIKVWDYETGD-FERTLKG-----HTDSVQDISFDHSGKLLASCSADM-----TIKL 85 (317)
T ss_dssp CSSSSEEEEE---------ESSSCEEEEETTTCC-CCEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----CCCE
T ss_pred cCCCCEEEEE---------eCCCeEEEEECCCCC-EEEEEeC-----CCCcEEEEeeeccccccccccccc-----cccc
Confidence 4566655532 234567777764332 2222221 225688899999999998765543 1222
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcC
Q 004149 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 209 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 209 (771)
+............ ... .......|+|+++.|+....+.... .|+............+........|.++..
T Consensus 86 ~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (317)
T d1vyhc1 86 WDFQGFECIRTMH-GHD------HNVSSVSIMPNGDHIVSASRDKTIK--MWEVQTGYCVKTFTGHREWVRMVRPNQDGT 156 (317)
T ss_dssp EETTSSCEEECCC-CCS------SCEEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred ccccccccccccc-ccc------ccceeeeccCCCceEEeeccCccee--EeecccceeeeEEccCCCcceeeecccCCC
Confidence 2111111111111 111 1125788999999998876654321 222111111111112222333455677755
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc----ee-eeeeeeccCCceeEE
Q 004149 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET----RK-LGIKYCYNRPCALYA 284 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~----~~-~g~~~~~~~~~~l~~ 284 (771)
..+++.....+.++++.+++..... ......+..+.|+|++.. +......... .. .........+..|..
T Consensus 157 ~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 231 (317)
T d1vyhc1 157 LIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSY----SSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231 (317)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGG----GGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred EEEEEeCCCeEEEEeeccceeeEEE-ecCCCCceEEEEeecccc----ceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence 5555666788999999887765431 233445667788887653 2211100000 00 000111123457888
Q ss_pred EecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 285 VRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+++ .+++ ...+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++...
T Consensus 232 ~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~ 283 (317)
T d1vyhc1 232 WDV-----------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-----------KTLRVWDYKNKRCMK 283 (317)
T ss_dssp EET-----------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-----------TEEEEECCTTSCCCE
T ss_pred EEC-----------------CCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCcEEE
Confidence 887 4444 35555666778899999999998877654 358899988765432
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
.... +...+..++|+||++.| ++...++...||
T Consensus 284 ~~~~-------------------h~~~V~~~~~s~~~~~l-~s~s~Dg~i~iW 316 (317)
T d1vyhc1 284 TLNA-------------------HEHFVTSLDFHKTAPYV-VTGSVDQTVKVW 316 (317)
T ss_dssp EEEC-------------------CSSCEEEEEECSSSSCE-EEEETTSEEEEE
T ss_pred EEcC-------------------CCCCEEEEEEcCCCCEE-EEEeCCCeEEEe
Confidence 1111 01134567899999865 455666666665
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.96 E-value=1.2e-06 Score=92.15 Aligned_cols=282 Identities=12% Similarity=0.099 Sum_probs=156.3
Q ss_pred eEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
...++||||+++||..+.++ +...+.+++ .+++..... +.... ++++.|++|++.|+|...+......
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~---------~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVK---------FSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEEC---------SCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-ccccc---------ccceEEcCCCCEEEEEEeccccCcc
Confidence 34578999999999877654 345566666 555433211 11111 1588999999999998755422110
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee--eccCCC-CCCccceEEEecCCCCCcc
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIP-KSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~--~l~~~~-~~~~~~~~~wspDg~~~~~ 256 (771)
. +..-.......++...+.++... .+-... .......+..|+||+.
T Consensus 198 ~----------------------------~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~--- 246 (430)
T d1qfma1 198 D----------------------------GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--- 246 (430)
T ss_dssp S----------------------------SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE---
T ss_pred c----------------------------ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce---
Confidence 0 00000112357888888775432 221111 1222345567889987
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++....... .....+|.+|+...+ .. .........+.......... ...+|..+++.++
T Consensus 247 -l~i~~~~~~----------~~~~~~~~~d~~~~~---~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn 305 (430)
T d1qfma1 247 -VLLSIREGC----------DPVNRLWYCDLQQES---NG------ITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTN 305 (430)
T ss_dssp -EEEEEECSS----------SSCCEEEEEEGGGSS---SS------SCSSCCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred -eeEEeeccC----------CccEEEEEeeCCCcc---cc------cccccceeEeecccccceEE-EecCCceeecccC
Confidence 766543221 123478899873100 00 00000112222221111222 3346777888887
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
.. .....|..+++....... ...+++ . .+.. ......+-.+..|++....++...|.
T Consensus 306 ~~-------a~~~~L~~~~~~~~~~~~----w~~vi~---~-~~~~--------~~~~~~~~~~~~lvl~~~~~~~~~l~ 362 (430)
T d1qfma1 306 RH-------SPNYRLINIDFTDPEESK----WKVLVP---E-HEKD--------VLEWVACVRSNFLVLCYLHDVKNTLQ 362 (430)
T ss_dssp TT-------CTTCEEEEEETTBCCGGG----CEEEEC---C-CSSC--------EEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred cc-------cccceeEEecCCCCcccc----ceEEec---c-cCcc--------eeeeEEEEECCEEEEEEEcCCEeEEE
Confidence 65 234679988886543211 111111 0 0000 00112233445788887788899999
Q ss_pred EEECCCCcEEEecCCCCCceeeEEe--ecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 417 SVNVSSGELLRITPAESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s--~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
.+++.+++...+..... .+...++ .+.+.+++..+++.+|+.+|.+++.+++
T Consensus 363 v~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 363 LHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCCCcEEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 99999999888865543 2223333 4677899999999999999999987664
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.92 E-value=2.7e-09 Score=113.20 Aligned_cols=189 Identities=11% Similarity=-0.045 Sum_probs=116.2
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.+||.+++++... ++....+..++|||||++ |+..+ +...|.++|+
T Consensus 41 ~g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~----l~~~s---------------~dg~v~~~d~--------- 90 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRY----LFVIG---------------RDGKVNMIDL--------- 90 (432)
T ss_dssp TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCE----EEEEc---------------CCCCEEEEEe---------
Confidence 47899999999988776 444456889999999997 76544 3347888887
Q ss_pred hhhhcCCCCCCcce---ec---CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004149 297 LELKESSSEDLPVV---NL---TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 297 ~~~~~~~~~~~~~~---~l---t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
.+++.. .+ ..+.+.+.+|.|||||++|+...... ..+.+||..+++..........
T Consensus 91 --------~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~----------~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 91 --------WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP----------PQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp --------TSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET----------TEEEEEETTTCCEEEEEECCEE
T ss_pred --------eCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC----------CeEEEEeCccccceeeeccCCc
Confidence 444422 22 22334577899999999986555432 4588999988775433221111
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC--CCCCceeeEEeecCCEEE
Q 004149 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNII 448 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~d~~~l~ 448 (771)
... ...+. .......+.+|+||+.++++... ...++.++..+++..++.. .........++|||++++
T Consensus 153 ~~~------~~~~~--~~~~~~~v~~s~dg~~~~vs~~~--~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~ 222 (432)
T d1qksa2 153 TYD------EQEYH--PEPRVAAILASHYRPEFIVNVKE--TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 222 (432)
T ss_dssp CTT------TCCEE--SCCCEEEEEECSSSSEEEEEETT--TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred ccc------ceecc--CCCceeEEEECCCCCEEEEEEcc--CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEE
Confidence 000 00000 00111234678999987776543 3457778887776444322 222345578999999888
Q ss_pred EEEeCCCCCCeEEEEEec
Q 004149 449 AVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 449 ~~~s~~~~p~~l~~~~~~ 466 (771)
......+ .+.+.+..
T Consensus 223 va~~~~~---~v~v~d~~ 237 (432)
T d1qksa2 223 TAANARN---KLVVIDTK 237 (432)
T ss_dssp EEEGGGT---EEEEEETT
T ss_pred Eeccccc---eEEEeecc
Confidence 8775432 35555543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=1.7e-07 Score=94.77 Aligned_cols=210 Identities=13% Similarity=0.051 Sum_probs=116.3
Q ss_pred cceEEEeCC--CCCeEEEEecCCCCCCeEEEEecCCcceEEEe-cC---CcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 100 GASAVVPSP--SGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VP---QTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 100 ~~~~~~~SP--dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
.+...+||| ||+.||-.+.. +.-.+|.+..+.....+.. .. ....+ .+..+.|||||++|+.++..
T Consensus 65 ~v~~v~fsP~~~g~~lasgs~D--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~------~v~~v~~s~~~~~l~~~~~~ 136 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGDES--GKVIVWGWTFDKESNSVEVNVKSEFQVLAG------PISDISWDFEGRRLCVVGEG 136 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEETT--SEEEEEEEEEEGGGTEEEEEEEEEEECCSS------CEEEEEECTTSSEEEEEECC
T ss_pred CEEEEEEeeCCCCCEEEEEeCC--CCEEEeeecCCcceeeeecccccccccccC------cEEEEEECCCCCccceeecc
Confidence 478899998 56677654433 3333444332222211111 00 01111 23689999999999887643
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
. ...+.+++.++++..... ......+..+.|+|+++.
T Consensus 137 ~------------------------------------------~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~ 173 (325)
T d1pgua1 137 R------------------------------------------DNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPM 173 (325)
T ss_dssp S------------------------------------------SCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSC
T ss_pred c------------------------------------------cceEEEEeecccccceee-eecccccccccccccccc
Confidence 2 235667777777654331 234456788999999987
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-ee---cCCCCccccceeecCCCC
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN---LTESISSAFFPRFSPDGK 329 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~---lt~~~~~~~~p~~SpDG~ 329 (771)
++.++. .+..|.++++ ...+. .. .......+....|+||+.
T Consensus 174 ----~~~~~~--------------~d~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~v~~v~~~pd~~ 218 (325)
T d1pgua1 174 ----RSMTVG--------------DDGSVVFYQG-----------------PPFKFSASDRTHHKQGSFVRDVEFSPDSG 218 (325)
T ss_dssp ----EEEEEE--------------TTTEEEEEET-----------------TTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred ----eEEEee--------------cccccccccc-----------------cccccceecccccCCCCccEEeeeccccc
Confidence 776552 2235677776 33221 11 223344578899999864
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc---cCCCEEEEE
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL---SDGCTMLLS 406 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s---~dg~~l~~~ 406 (771)
.++.....+ ..|.+||+.+++........ . ..+....|+ +||++|+ +
T Consensus 219 ~~l~s~~~d----------~~i~iwd~~~~~~~~~l~~~----------~---------~~v~~~~~s~~~~dg~~l~-s 268 (325)
T d1pgua1 219 EFVITVGSD----------RKISCFDGKSGEFLKYIEDD----------Q---------EPVQGGIFALSWLDSQKFA-T 268 (325)
T ss_dssp CEEEEEETT----------CCEEEEETTTCCEEEECCBT----------T---------BCCCSCEEEEEESSSSEEE-E
T ss_pred eeccccccc----------cceeeeeecccccccccccc----------c---------cccccceeeeeccCCCEEE-E
Confidence 444433322 35888998776542111100 0 012233454 6888664 4
Q ss_pred eeeCCeeEEEEEECCCCcEEE
Q 004149 407 SIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~~~~ 427 (771)
...++...|| |+.+++..+
T Consensus 269 ~s~D~~i~iw--d~~~~~~~~ 287 (325)
T d1pgua1 269 VGADATIRVW--DVTTSKCVQ 287 (325)
T ss_dssp EETTSEEEEE--ETTTTEEEE
T ss_pred EeCCCeEEEE--ECCCCCEEE
Confidence 5556655555 888887554
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=9.2e-10 Score=120.51 Aligned_cols=132 Identities=23% Similarity=0.229 Sum_probs=93.2
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~-~~~g~~~~~~~~~~~~~ 594 (771)
.|.+.| -+|.|+......+.|+||++|||++.............++..+.+||.++||-. -|+-.......+++
T Consensus 94 EDCL~L--nI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~gN--- 168 (532)
T d2h7ca1 94 EDCLYL--NIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSRGN--- 168 (532)
T ss_dssp SCCCEE--EEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCCCC---
T ss_pred CcCCEE--EEEECCCCCCCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeeccCCCccccccccccccc---
Confidence 455555 477897666677899999999988765444332334456788999999999941 11211101112223
Q ss_pred cchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCccc
Q 004149 595 QDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 652 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~ 652 (771)
.-+.|...|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++...
T Consensus 169 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~~ 231 (532)
T d2h7ca1 169 WGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 231 (532)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhccccc
Confidence 3489999999999885 23699999999999999999887763 2458999999987543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=3.9e-08 Score=99.69 Aligned_cols=248 Identities=8% Similarity=0.023 Sum_probs=136.9
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC--cceEEEecCCcccccccCCCcccceeecC--CCCeEEEEecCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPS 175 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSp--Dg~~la~~~~~~~ 175 (771)
.....+|+|+|+.||+..... .++..++.. ....+......... ....++||| ||+.|+..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~----~~i~~~~~~~~~~~~~~~~~gh~~~------~v~~v~fsP~~~g~~lasgs~--- 85 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKS----AFVRCLDDGDSKVPPVVQFTGHGSS------VVTTVKFSPIKGSQYLCSGDE--- 85 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTE----EEEEECCSSCCSSCSEEEECTTTTS------CEEEEEECSSTTCCEEEEEET---
T ss_pred CeEEEEECCCCCEEEEEeCCC----EEEEEEeCCCCCccceEEEeCCCCC------CEEEEEEeeCCCCCEEEEEeC---
Confidence 345678999999999975322 223333322 11112222111111 126899998 5677766433
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee-ccC------CCCCCccceEEEe
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKG------IPKSLSVGQVVWA 248 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~------~~~~~~~~~~~ws 248 (771)
+..|.+||+..++... +.. ......+..+.|+
T Consensus 86 -----------------------------------------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 124 (325)
T d1pgua1 86 -----------------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124 (325)
T ss_dssp -----------------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC
T ss_pred -----------------------------------------CCCEEEeeecCCcceeeeecccccccccccCcEEEEEEC
Confidence 2567788876543211 100 1123356788999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCC
Q 004149 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpD 327 (771)
|||+. |+.++... ...+..++. +++ ....+..+...+.+..|+|+
T Consensus 125 ~~~~~----l~~~~~~~-------------~~~~~~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~ 170 (325)
T d1pgua1 125 FEGRR----LCVVGEGR-------------DNFGVFISW-----------------DSGNSLGEVSGHSQRINACHLKQS 170 (325)
T ss_dssp TTSSE----EEEEECCS-------------SCSEEEEET-----------------TTCCEEEECCSCSSCEEEEEECSS
T ss_pred CCCCc----cceeeccc-------------cceEEEEee-----------------cccccceeeeeccccccccccccc
Confidence 99998 88776321 224555565 333 34566666777888999999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
++.++.....+ ..+.++|..+.+.... ... +.+ ....+..++|+||+..++++.
T Consensus 171 ~~~~~~~~~~d----------~~v~~~d~~~~~~~~~---------~~~------~~~-~~~~v~~v~~~pd~~~~l~s~ 224 (325)
T d1pgua1 171 RPMRSMTVGDD----------GSVVFYQGPPFKFSAS---------DRT------HHK-QGSFVRDVEFSPDSGEFVITV 224 (325)
T ss_dssp SSCEEEEEETT----------TEEEEEETTTBEEEEE---------ECS------SSC-TTCCEEEEEECSTTCCEEEEE
T ss_pred ccceEEEeecc----------ccccccccccccccee---------ccc------ccC-CCCccEEeeeccccceecccc
Confidence 98866555433 2477777655332110 000 000 001234678999876677777
Q ss_pred eeCCeeEEEEEECCCCcEEEecCC-CCCceeeEEe---ecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 408 IWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLT---LDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s---~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
..++...+| |+.+++....... ...+....++ +|++.|+....+ ..+.+.++.+
T Consensus 225 ~~d~~i~iw--d~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D----~~i~iwd~~~ 282 (325)
T d1pgua1 225 GSDRKISCF--DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD----ATIRVWDVTT 282 (325)
T ss_dssp ETTCCEEEE--ETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT----SEEEEEETTT
T ss_pred ccccceeee--eeccccccccccccccccccceeeeeccCCCEEEEEeCC----CeEEEEECCC
Confidence 766665555 8888876654432 2222223444 577776654422 2355555543
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.85 E-value=3.9e-09 Score=104.22 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCCCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004149 534 CSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
..++| ||++||...... ...|......|.++||.|+++|++| ++... ...+++.+.|+.+.+.
T Consensus 5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~---~~~~~----------~~a~~l~~~i~~~~~~ 70 (285)
T d1ex9a_ 5 QTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSE----------VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCC---CCCcH----------HHHHHHHHHHHHHHHH
Confidence 45678 799999544321 1246678889999999999999998 43322 1244555666655554
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
.+.+++.|+||||||.++..++.++|++++.++.++..
T Consensus 71 --~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 24578999999999999999999999999999887654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.85 E-value=1.3e-08 Score=103.24 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=88.9
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
+.+.....|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|..+++
T Consensus 200 ~~~~~d~~v~i~d~~~~~~~~~~-~~h~~~i~~v~~~p~~~~----l~s~s---------------~d~~i~~~~~---- 255 (340)
T d1tbga_ 200 VSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRLFDL---- 255 (340)
T ss_dssp EEEETTTEEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET----
T ss_pred EEeecCceEEEEECCCCcEEEEE-eCCCCCeEEEEECCCCCE----EEEEe---------------CCCeEEEEee----
Confidence 34455688999999988765541 334456788999999987 76655 2336778887
Q ss_pred chhhhhhhhcCCCCCCcc-eec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 292 SEASELELKESSSEDLPV-VNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~-~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
..... ..+ ......+....|+|||+.|+..+.+ ..|++||+.+++......+
T Consensus 256 -------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~- 310 (340)
T d1tbga_ 256 -------------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADRAGVLAG- 310 (340)
T ss_dssp -------------TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT-----------SCEEEEETTTCCEEEEECC-
T ss_pred -------------cccccccccccccccCceEEEEECCCCCEEEEEECC-----------CEEEEEECCCCcEEEEEcC-
Confidence 33332 222 2334457889999999988776654 3488999877654221111
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+...+..++|+||++.| ++.+.++...||
T Consensus 311 ------------------H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iW 339 (340)
T d1tbga_ 311 ------------------HDNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp ------------------CSSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred ------------------CCCCEEEEEEeCCCCEE-EEEccCCEEEEe
Confidence 11134567899999865 556666766666
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.84 E-value=2.9e-09 Score=107.58 Aligned_cols=104 Identities=18% Similarity=0.317 Sum_probs=76.6
Q ss_pred CCCCcEEEEEcCCCCCCC----CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH
Q 004149 534 CSCDPLIVVLHGGPHSVS----LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~----~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 609 (771)
..++| ||++||..+... ...|......|+++||.|+++|+|| +|.+. ......+++.+.++.+.+
T Consensus 6 ~~k~P-vvlvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g---~g~s~-------~~~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 6 ATRYP-VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSG---FQSDD-------GPNGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CCSSC-EEEECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBC---SSCTT-------STTSHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCC---CCCCC-------CCcccHHHHHHHHHHHHH
Confidence 34567 567899654321 1236678889999999999999998 44321 111235666666766665
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
. .+.++|.|+||||||.++..++.++|++++.+|.+++.
T Consensus 75 ~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p 113 (319)
T d1cvla_ 75 A--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 113 (319)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred H--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECCC
Confidence 5 24689999999999999999999999999999988764
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=8.3e-10 Score=109.31 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH-HHHHHHHcCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGL 612 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~ 612 (771)
+.+.| ||++||++++ ...|..++..| ++.|+++|++|.+.+ . ..+++.+ .++.+.+.
T Consensus 23 ~~~~P-l~l~Hg~~gs--~~~~~~l~~~L---~~~v~~~d~~g~~~~---~-----------~~~~~a~~~~~~~~~~-- 80 (286)
T d1xkta_ 23 SSERP-LFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTRAAPL---D-----------SIHSLAAYYIDCIRQV-- 80 (286)
T ss_dssp CCSCC-EEEECCTTCC--CGGGHHHHHTC---SSCEEEECCCTTSCC---S-----------CHHHHHHHHHHHHHHH--
T ss_pred CCCCe-EEEECCCCcc--HHHHHHHHHHc---CCeEEEEeCCCCCCC---C-----------CHHHHHHHHHHHHHHh--
Confidence 34445 7899998876 45676666555 789999999984322 1 1222222 22233333
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCC
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p 649 (771)
...+++.|+||||||.+|+.+|.++|++...++....
T Consensus 81 ~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~~ 117 (286)
T d1xkta_ 81 QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 117 (286)
T ss_dssp CCSSCCEEEEETHHHHHHHHHHHHHHHC------CCE
T ss_pred cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEEE
Confidence 2357899999999999999999999988777655443
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.78 E-value=2.7e-09 Score=115.01 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=88.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-h-HHHHHHHHCCcEEEEECCCCC-CCCC--hhhhhcCCC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-S-KSLAFLSSVGYSLLIVNYRGS-LGFG--EEALQSLPG 590 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~-~~~~~la~~G~~V~~~d~rG~-~~~g--~~~~~~~~~ 590 (771)
.|.+ ..-+|.|+. ..++.|+||++|||++....... . .....+++.+++||.++||-. -|+- .+.....++
T Consensus 79 EDCL--~lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~g 154 (483)
T d1qe3a_ 79 EDCL--YVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSD 154 (483)
T ss_dssp SCCC--EEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSCS
T ss_pred CcCC--EEEEEECCC--CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccchhhcccccccccccc
Confidence 3554 445778874 56789999999998866543322 1 123445566899999999941 1121 011111223
Q ss_pred CccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCcc
Q 004149 591 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 651 (771)
+ .-+.|++.|++|+.++ ...|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 155 N---~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 155 N---LGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp C---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred c---cccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 3 3489999999999886 236999999999999999998887632 35899999998854
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.77 E-value=1.2e-07 Score=95.85 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=64.0
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....+++++..++........+.........++|+++. ++... ..|.++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------------~~i~v~d~-------- 267 (337)
T d1pbyb_ 217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR----AFGAY-----------------NVLESFDL-------- 267 (337)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE----EEEEE-----------------SEEEEEET--------
T ss_pred cCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceE----EEEcc-----------------ccEEEEEC--------
Confidence 34578888988887655421333445556778888875 43322 26888898
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.+++............+++|||||++|+..... .+|.+||..+.+.
T Consensus 268 ---------~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~-----------~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 268 ---------EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL-----------GDLAAYDAETLEK 313 (337)
T ss_dssp ---------TTTEEEEEEECSSCCCEEEECTTSCEEEEESBS-----------SEEEEEETTTCCE
T ss_pred ---------CCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC-----------CcEEEEECCCCcE
Confidence 666544433445567889999999988654332 3599999988654
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.77 E-value=4.3e-09 Score=114.86 Aligned_cols=131 Identities=20% Similarity=0.231 Sum_probs=88.8
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-c--hHHH--HHHHHCCcEEEEECCCCC-CCCC--hhhhh
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-Y--SKSL--AFLSSVGYSLLIVNYRGS-LGFG--EEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~--~~~~--~~la~~G~~V~~~d~rG~-~~~g--~~~~~ 586 (771)
+.|.+.+ -++.|+.....++.|+||++|||++...... + .... ..++.++++||.++||.. -|+- .....
T Consensus 94 sEDCL~L--nI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~ 171 (534)
T d1llfa_ 94 SEDCLTI--NVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA 171 (534)
T ss_dssp CSCCCEE--EEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCcCCEE--EEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCccccc
Confidence 3455455 5788976666788999999999887544332 2 1222 245678999999999942 1111 11111
Q ss_pred cCCCCccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHh-----CC---CceeEEEecCCc
Q 004149 587 SLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ-----AP---DKFVAAAARNPL 650 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~-----~p---~~~~a~v~~~p~ 650 (771)
..+++ .-+.|++.|++|+.++- ..|+++|.|+|+|.||..+..++.. .| .+|+.+|+.++.
T Consensus 172 ~~~gN---~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 172 EGSGN---AGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HTCTT---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred ccccc---cchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 22333 34789999999999862 3699999999999999988655531 11 369999998874
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.75 E-value=4.2e-09 Score=115.06 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=90.8
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc---hHHH--HHHHHCCcEEEEECCCC-CCCCC--hhhhh
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY---SKSL--AFLSSVGYSLLIVNYRG-SLGFG--EEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~---~~~~--~~la~~G~~V~~~d~rG-~~~~g--~~~~~ 586 (771)
+.|.+.| -+|.|++....++.|+||++|||++....... .... ...+..+.+||.++||- .-|+- .+...
T Consensus 102 sEDCL~L--nI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~ 179 (544)
T d1thga_ 102 NEDCLYL--NVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CSCCCEE--EEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCcCCEE--EEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc
Confidence 4456555 57789876667889999999998876543221 2222 23357889999999993 11121 11112
Q ss_pred cCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCcc
Q 004149 587 SLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 651 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~ 651 (771)
..++++ -+.|.+.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.++..
T Consensus 180 ~~~gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~~ 252 (544)
T d1thga_ 180 EGNTNA---GLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGP 252 (544)
T ss_dssp HTCTTH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCC
T ss_pred cccccH---HHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhcccccccccc
Confidence 223443 488999999999886 236999999999999999888776531 24899999988753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.74 E-value=3e-07 Score=93.08 Aligned_cols=100 Identities=8% Similarity=0.030 Sum_probs=64.4
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004149 104 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
|++|++|+++++....+ .+.+++ ..++..+.+.++... ...++.|||||++|+....
T Consensus 2 ~a~~~~~~~l~~~~~~~----~v~v~D~~t~~~~~t~~~~~~~--------~p~~l~~spDG~~l~v~~~---------- 59 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPN----NLHVVDVASDTVYKSCVMPDKF--------GPGTAMMAPDNRTAYVLNN---------- 59 (346)
T ss_dssp CCCCTTCEEEEEEETTT----EEEEEETTTTEEEEEEECSSCC--------SSCEEEECTTSSEEEEEET----------
T ss_pred ccCCCCCcEEEEEcCCC----EEEEEECCCCCEEEEEEcCCCC--------CcceEEECCCCCEEEEEEC----------
Confidence 68999999998865443 455555 444544444443221 0148999999998765432
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-----CccceEEEecCCCCCccE
Q 004149 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-----LSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-----~~~~~~~wspDg~~~~~~ 257 (771)
....|++||+.+++.......... ..+..++|||||+.
T Consensus 60 ---------------------------------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~---- 102 (346)
T d1jmxb_ 60 ---------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE---- 102 (346)
T ss_dssp ---------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE----
T ss_pred ---------------------------------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCE----
Confidence 236899999999876543101111 13567899999997
Q ss_pred EEEEe
Q 004149 258 LVFVG 262 (771)
Q Consensus 258 l~~~~ 262 (771)
++...
T Consensus 103 l~v~~ 107 (346)
T d1jmxb_ 103 VYATV 107 (346)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=6.5e-07 Score=89.84 Aligned_cols=59 Identities=7% Similarity=-0.088 Sum_probs=38.4
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC
Q 004149 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 392 ~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~ 453 (771)
..++|+|+++.| ++...++...+| |+.+++...-...........++++++.++...++
T Consensus 255 ~~l~~sp~~~~l-asg~~Dg~v~vW--D~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 255 NSIEFSPRHKFL-YTAGSDGIISCW--NLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp EEEEECTTTCCE-EEEETTSCEEEE--ETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred eeEEecCCccEE-EEECCCCEEEEE--ECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence 357899999855 566556655555 88887654433322334567889999887766543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.69 E-value=2.2e-06 Score=87.77 Aligned_cols=31 Identities=6% Similarity=-0.273 Sum_probs=23.8
Q ss_pred CCCcccc-CCCEEEEEeeeCCeeEEEEEECCC
Q 004149 392 LSNPWLS-DGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 392 ~~~~~s~-dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
..++++| ||++|+++....+...+|+++-++
T Consensus 312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 4567887 899888877777788888887654
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.68 E-value=9e-09 Score=111.73 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=87.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHH-HHHCCcEEEEECCCCC-CCCC--hhhhhcCCC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAF-LSSVGYSLLIVNYRGS-LGFG--EEALQSLPG 590 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~-la~~G~~V~~~d~rG~-~~~g--~~~~~~~~~ 590 (771)
.|.+.| -+|.|+.....++.|+||++|||.+..... .+...... ....+.+||.++||-. -||- .+......+
T Consensus 78 EDCL~L--nI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~~~ 155 (517)
T d1ukca_ 78 EDCLFI--NVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDL 155 (517)
T ss_dssp SCCCEE--EEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSSCT
T ss_pred CcCCEE--EEEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCcccccccccc
Confidence 455555 477887655567889999999988765433 23222222 3356789999999941 1111 111111122
Q ss_pred CccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHh----CCCceeEEEecCCcc
Q 004149 591 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLC 651 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~----~p~~~~a~v~~~p~~ 651 (771)
+ .-+.|...|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|..+|+.++..
T Consensus 156 N---~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 156 N---AGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp T---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred c---hhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 3 3488999999999986 23699999999999999988766543 224899999998854
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.67 E-value=2.5e-05 Score=68.79 Aligned_cols=291 Identities=10% Similarity=0.133 Sum_probs=170.5
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEE-eechhhcccceeEEEEEEeecCCCCccceeecCCccccccceE
Q 004149 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI-SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA 103 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~ 103 (771)
.++++.++++..+|-..---.. ++..+.|.. ++ ..-++.. + .+++.++||..|.. ....
T Consensus 2 seivk~lE~lv~ip~Y~v~Gkl-----~~d~ll~~~~se-------G~vni~~--l--~g~~~vkLtkePI~----~~~~ 61 (313)
T d2hu7a1 2 SRIVRDVERLIAVEKYSLQGVV-----DGDKLLVVGFSE-------GSVNAYL--Y--DGGETVKLNREPIN----SVLD 61 (313)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEE-----TTTEEEEEEEET-------TEEEEEE--E--SSSSCEECCSSCCS----EECE
T ss_pred hhHHHHHHHHhcccceeEEEEe-----cCCcEEEEEecc-------ceEEEEE--E--eCCEEEEEeccccc----CcCC
Confidence 4677888999988877543332 445455543 33 2234444 2 45577888888732 2333
Q ss_pred EEeCCCCCeEEEEecCCCCC--CeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 104 VVPSPSGSKLLVVRNPENES--PIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
| -+.=.++.|+++...+. ..++..... |+..++ ..+..+ .-.+..-|++.|+|+....
T Consensus 62 P--k~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i-~spk~v----------RI~S~~yddk~vvF~Gase----- 123 (313)
T d2hu7a1 62 P--HYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL-EAVKPM----------RILSGVDTGEAVVFTGATE----- 123 (313)
T ss_dssp E--CTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC-TTSCSB----------EEEEEEECSSCEEEEEECS-----
T ss_pred C--ccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe-cCCceE----------EEEEeeecCceEEEecccC-----
Confidence 3 34445899999886443 346666632 433222 222222 3456667899999985432
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....||+ +++|+.+.|...| ..++.-.-.|+. |+
T Consensus 124 ------------------------------------d~~~LYv--iegGklrkL~~vP----pFsFVtDI~~d~----I~ 157 (313)
T d2hu7a1 124 ------------------------------------DRVALYA--LDGGGLRELARLP----GFGFVSDIRGDL----IA 157 (313)
T ss_dssp ------------------------------------SCEEEEE--EETTEEEEEEEES----SCEEEEEEETTE----EE
T ss_pred ------------------------------------CceEEEE--EeCCceeeeccCC----CcceEEeccCCe----EE
Confidence 1245555 5588888883112 222322234555 65
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCC
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
-.+.-.+ ++..+|+.|+ .+|..+.++...++..++..+|+.|-+ ...+..
T Consensus 158 G~g~~~g-----------~~~sfF~adl-----------------~SG~lri~tpkeGS~~~ay~~~gnKV~--sdyEt~ 207 (313)
T d2hu7a1 158 GLGFFGG-----------GRVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKVT--AGLETA 207 (313)
T ss_dssp EEEEEET-----------TEEEEEEEET-----------------TTEEEEEECCSSEEEEEEEECTTSCEE--EEEEES
T ss_pred EEeeecC-----------CcceEEEEec-----------------ccCCEEEecCCCCcccceeEccCceee--eccCCC
Confidence 5543222 2336999998 789999999999999999999987752 222221
Q ss_pred CCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc--cccCCCCCCc---cccCCCEEEEEeeeCCeeE
Q 004149 340 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG--LYSSSILSNP---WLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g--~~~~~~~~~~---~s~dg~~l~~~~~~~~~~~ 414 (771)
| ...+..+|++++....+ .||+ +|.-...... +.||++ |++.+..++...
T Consensus 208 ---g----Esywit~D~~s~~yerv-----------------e~P~kd~~sy~p~~I~~~~Y~Pdd~-L~iiakrdG~s~ 262 (313)
T d2hu7a1 208 ---R----EARLVTVDPRDGSVEDL-----------------ELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSA 262 (313)
T ss_dssp ---S----CEEEEEECTTTCCEEEC-----------------CCSSCHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEE
T ss_pred ---C----ceEEEEEecccCceeee-----------------ecCcccceeecceEEEeeeeCCCCc-EEEEEecCCchh
Confidence 1 23344668776654222 2222 1111122233 579998 545556788888
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004149 415 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~ 462 (771)
||. .|+. +....+ .......-++.++|+.++..+|+.+.-
T Consensus 263 lF~----nGk~--in~p~G--~~~gat~i~~~iyfshsSL~tP~kI~~ 302 (313)
T d2hu7a1 263 VFI----DGER--VEAPQG--NHGRVVLWRGKLVTSHTSLSTPPRIVS 302 (313)
T ss_dssp EEE----TTEE--ECCCSS--EEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred eee----cceE--ecCCCC--cccceEEECCEEEEeecccCCCceeEE
Confidence 885 4543 333344 223455668899999999999998764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.64 E-value=5.3e-06 Score=84.92 Aligned_cols=175 Identities=10% Similarity=0.039 Sum_probs=86.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-----cCCC
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTES 315 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----lt~~ 315 (771)
.+.++.|+|||+. |+... . ....|++++.+ ..+.... ....
T Consensus 146 h~h~v~~sPdG~~----l~v~d-~-------------g~d~v~~~~~~----------------~~g~~~~~~~~~~~~~ 191 (365)
T d1jofa_ 146 GIHGMVFDPTETY----LYSAD-L-------------TANKLWTHRKL----------------ASGEVELVGSVDAPDP 191 (365)
T ss_dssp CEEEEEECTTSSE----EEEEE-T-------------TTTEEEEEEEC----------------TTSCEEEEEEEECSST
T ss_pred cceEEEECCCCCE----EEEee-C-------------CCCEEEEEEcc----------------CCCceeeccceeecCC
Confidence 4568899999996 65543 2 12257776652 2232211 1222
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc--cCCCCC
Q 004149 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY--SSSILS 393 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~--~~~~~~ 393 (771)
....+..+|+|||+.+ |+.++. ..+|.++++++++...+... ...+++........+..+ ......
T Consensus 192 g~gPr~i~f~pdg~~~-yv~~e~---------~~~V~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYL-YALMEA---------GNRICEYVIDPATHMPVYTH--HSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp TCCEEEEEECTTSSEE-EEEETT---------TTEEEEEEECTTTCCEEEEE--EEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred CCceEEEEECCCCceE-EEeccC---------CCEEEEEEecCCCceEEEEe--eeeccccccccccccccccccCCccc
Confidence 3357788999999965 555543 35688888766544222111 111222111100000000 001224
Q ss_pred CccccCCCEEEEEeeeCCe-----eEEEEEECCCCcEEEec-----C-CCCCceeeEEee-cCCEEEEEEeCCCCCCeEE
Q 004149 394 NPWLSDGCTMLLSSIWGSS-----QVIISVNVSSGELLRIT-----P-AESNFSWSLLTL-DGDNIIAVSSSPVDVPQVK 461 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~-----~~l~~~d~~tg~~~~l~-----~-~~~~~~~~~~s~-d~~~l~~~~s~~~~p~~l~ 461 (771)
+.++|||++||.+...... ...|.++. .+.+.+.. . .........+++ +|++|+.+.... ..|.
T Consensus 260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s---~~v~ 335 (365)
T d1jofa_ 260 CALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE---GWLE 335 (365)
T ss_dssp EEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS---CEEE
T ss_pred eEECCCCCEEEEEcccCCCccceEEEEEEecC-CCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC---CeEE
Confidence 6789999988776543322 34455553 34443321 1 111223356777 677776664332 3344
Q ss_pred EEEe
Q 004149 462 YGYF 465 (771)
Q Consensus 462 ~~~~ 465 (771)
++++
T Consensus 336 v~~~ 339 (365)
T d1jofa_ 336 IYRW 339 (365)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.62 E-value=8e-08 Score=93.35 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=110.8
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~ 613 (771)
...|.+|++||.........|..++..|.. .+.|+.++++| ++.. .....+++++.+.+ +.+.+. .
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~La~~L~~-~~~V~al~~pG---~~~~-------e~~~~s~~~~a~~~~~~i~~~--~ 106 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTRLAGALRG-IAPVRAVPQPG---YEEG-------EPLPSSMAAVAAVQADAVIRT--Q 106 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHHHHHHHTT-TCCEEEECCTT---SSTT-------CCEESSHHHHHHHHHHHHHHT--T
T ss_pred CCCCeEEEECCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCC---cCCC-------CCCCCCHHHHHHHHHHHHHHh--C
Confidence 346889999973222224567778888855 48999999998 4322 11122355555543 344443 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhC---CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhH--
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDL-- 688 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 688 (771)
...++.|+|||+||.+|..+|.+. ...+..+++..+..-...... ..+ .....................
T Consensus 107 ~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~~~p~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~l~a 180 (255)
T d1mo2a_ 107 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAM----NAW--LEELTATLFDRETVRMDDTRLTA 180 (255)
T ss_dssp SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEECSCSSHHHHH----HHH--HHHHHTTCC----CCCCHHHHHH
T ss_pred CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECCCCCCCccch----hhH--HHHHHHHhhccccccCCHHHHHH
Confidence 346799999999999999988754 345777776665321100000 000 000000000000000111111
Q ss_pred -HHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 689 -TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 689 -~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+.+.-.......+.+|++++.+++|....... .+ .......++++.+++ +|.....+........|.+||.
T Consensus 181 ~~~~~~~~~~~~~~~~~~p~l~v~a~~~~~~~~~~--~w---~~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 181 LGAYDRLTGQWRPRETGLPTLLVSAGEPMGPWPDD--SW---KPTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp HHHHHHHHHHCCCCCCCCCEEEEECCSSSSCCTTC--CC---CCCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccccceEEEeecCCCCCcchhh--HH---HHhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 1111111112235678999999998876543221 11 011234578889986 7763333555567778888874
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.61 E-value=4.8e-06 Score=83.42 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=142.7
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
..|+|.++|+ |.|+ +.. ...|+.++ +++...... ...... .+++++|||+.++. ....
T Consensus 43 EG~~~D~~G~-Ly~~-D~~--~g~I~ri~p~g~~~~~~~~~~~~~p----------~gla~~~dG~l~va-~~~~----- 102 (319)
T d2dg1a1 43 EGLNFDRQGQ-LFLL-DVF--EGNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGRLFVC-YLGD----- 102 (319)
T ss_dssp EEEEECTTSC-EEEE-ETT--TCEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSCEEEE-ECTT-----
T ss_pred EeCEECCCCC-EEEE-ECC--CCEEEEEECCCCeEEEEEeCCCCCe----------eEEEECCCCCEEEE-ecCC-----
Confidence 4699999997 6555 332 34688887 444333322 222222 48899999974432 1110
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
......++.++..++....+. ...........++.|||+ |
T Consensus 103 ----------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-----l 143 (319)
T d2dg1a1 103 ----------------------------------FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-----F 143 (319)
T ss_dssp ----------------------------------SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-----E
T ss_pred ----------------------------------CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-----e
Confidence 002356777777777665542 112233566789999996 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++....... ......+|+++. +++..+.+.........++|||||++|++....
T Consensus 144 ~vtd~~~~~--------~~~~g~v~~~~~-----------------dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~- 197 (319)
T d2dg1a1 144 YFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTETT- 197 (319)
T ss_dssp EEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG-
T ss_pred eeccccccc--------ccCcceeEEEec-----------------ccceeEEEeeccceeeeeeeccccceEEEeccc-
Confidence 776532211 123346899986 566666665544455678999999998877654
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..+|++++++........... .... . ...+. ....+++.+||+ |+++.. +...|.++
T Consensus 198 ---------~~~I~~~d~~~~g~~~~~~~~-~~~~-~----~~~~~-----~PdGl~vD~~G~-l~Va~~--~~g~V~~~ 254 (319)
T d2dg1a1 198 ---------ANRLHRIALEDDGVTIQPFGA-TIPY-Y----FTGHE-----GPDSCCIDSDDN-LYVAMY--GQGRVLVF 254 (319)
T ss_dssp ---------GTEEEEEEECTTSSSEEEEEE-EEEE-E----CCSSS-----EEEEEEEBTTCC-EEEEEE--TTTEEEEE
T ss_pred ---------CCceEEEEEcCCCceeccccc-eeee-c----cCCcc-----ceeeeeEcCCCC-EEEEEc--CCCEEEEE
Confidence 357999998754431110000 0000 0 00000 122456777886 655543 23467888
Q ss_pred ECCCCcEEEecCCCC------CceeeEEeecCCEEEEEEeCCCCCCe--EEEEE
Q 004149 419 NVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPVDVPQ--VKYGY 464 (771)
Q Consensus 419 d~~tg~~~~l~~~~~------~~~~~~~s~d~~~l~~~~s~~~~p~~--l~~~~ 464 (771)
+.++..+.++..+.. ......+.++++.++.+..+...+.. ||.++
T Consensus 255 ~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~ 308 (319)
T d2dg1a1 255 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 308 (319)
T ss_dssp CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred CCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEe
Confidence 875444555543221 22345677777777777665544443 45444
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.58 E-value=1.2e-08 Score=112.43 Aligned_cols=132 Identities=19% Similarity=0.177 Sum_probs=85.9
Q ss_pred cCCCceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCCc-------chHHHHHH-HHCCcEEEEECCCC-CCCCChhh
Q 004149 515 KGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS-------YSKSLAFL-SSVGYSLLIVNYRG-SLGFGEEA 584 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~-~~~~~~p~vv~~HGg~~~~~~~~-------~~~~~~~l-a~~G~~V~~~d~rG-~~~~g~~~ 584 (771)
+.|.+-| -+|.|... ...++.|+|||+|||++...... +......| +..+.+||.++||- .-|+-...
T Consensus 77 sEDCL~L--NI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~ 154 (579)
T d2bcea_ 77 NEDCLYL--NIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTG 154 (579)
T ss_dssp CSCCCEE--EEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CCcCCEE--EEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeeccccccccccccc
Confidence 3455445 47778643 23467999999999875432211 11112334 34569999999993 11111111
Q ss_pred hhcCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCcc
Q 004149 585 LQSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 585 ~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 651 (771)
....+++ .-+.|...|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 155 ~~~~~gN---~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 155 DSNLPGN---YGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp STTCCCC---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred ccCCCcc---chhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 1122333 3489999999999986 23699999999999999999877653 246899999998753
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.55 E-value=5.1e-08 Score=107.10 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=79.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCc-chHHHHHHH-HCCcEEEEECCCCC-CCCC-------hhhhhcCCCCccccchhhHHH
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLS-SVGYSLLIVNYRGS-LGFG-------EEALQSLPGKVGSQDVNDVLT 602 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~-~~~~~~~la-~~G~~V~~~d~rG~-~~~g-------~~~~~~~~~~~~~~~~~D~~~ 602 (771)
..++.|+|||+|||++...... .......|+ +.+.+||.++||-. -|+- ........++ .-+.|.+.
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN---~Gl~Dq~~ 211 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGN---VGLWDQAL 211 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSC---HHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeecceeccccccccccccccccccCCCCc---ccchHHHH
Confidence 4578899999999886543322 111223343 45699999999942 1111 1111122233 34899999
Q ss_pred HHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCccc
Q 004149 603 AIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 603 ~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~ 652 (771)
|++|+.++- .-|+++|.|+|+|.||..+.+++... ..+|+.+|+.++...
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 999999862 36999999999999999998776542 357899998887543
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=3.5e-08 Score=107.78 Aligned_cols=131 Identities=19% Similarity=0.139 Sum_probs=87.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc--chHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCCc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS--YSKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKV 592 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~--~~~~~~~la~~G~~V~~~d~rG-~~~~g~~~~~~~~~~~ 592 (771)
.|.+.| -+|.|.. ...++.||||++|||++...... ........++.+.+||.++||- .-|+-... ......
T Consensus 94 EDCL~L--nI~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYRlg~~Gfl~~~--~~~~~~ 168 (542)
T d2ha2a1 94 EDCLYL--NVWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSREAP 168 (542)
T ss_dssp SCCCEE--EEEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSSCC
T ss_pred CcCCEE--EEEecCC-CCCCCCcEEEEEEECccccccCcccccCchhhhhhccceeEeeeeeccceeeeccc--ccccCC
Confidence 355445 4777864 24578899999999876533221 1112233456799999999993 11111000 011122
Q ss_pred cccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCcc
Q 004149 593 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 651 (771)
+..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 169 gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 169 GNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 333488999999999986 236999999999999999999877642 25899999888743
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=7.6e-06 Score=82.31 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=97.7
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
+.+.....+.+||+.+++..... ...........|+|+++. ++..+ .+..|.++|+
T Consensus 175 ~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~---------------~d~~i~i~d~---- 230 (355)
T d1nexb2 175 VSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS---------------MDTTIRIWDL---- 230 (355)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE---------------TTSCEEEEET----
T ss_pred eeecccceeeeeecccccceeee-ecccccccccccccccee----eeccc---------------ccceEEeeec----
Confidence 34445678999999888765542 233445678899999987 76655 2346888887
Q ss_pred chhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004149 292 SEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
.++. ...+..+...+....|+ ++.|+..+.+ ..|.+||+.+.... +...
T Consensus 231 -------------~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~d-----------g~i~iwd~~~~~~~-~~~~--- 280 (355)
T d1nexb2 231 -------------ENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD-----------GSIRGWDANDYSRK-FSYH--- 280 (355)
T ss_dssp -------------TTCCEEEEECCCSSCCCEEEEC--SSEEEEECTT-----------SEEEEEETTTCCEE-EEEE---
T ss_pred -------------cccccccccccccccccccccc--cceeeeeecc-----------ccccccccccccee-cccc---
Confidence 4443 45555556667777775 4677665544 35888898764321 1000
Q ss_pred EEecccccCCCCCcccccCCCCC-CccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCC-CCCceeeEEeecCCEE
Q 004149 371 VIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPA-ESNFSWSLLTLDGDNI 447 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~-~~~~~~~~~s~d~~~l 447 (771)
...... ..++++++ ++++.. ++ .|..+|+.+|+.... ... ...+....| +++.+
T Consensus 281 -----------------~~~~~~~~~~~~~~~-~l~~g~-d~--~i~vwd~~tg~~~~~~~~~~~~~V~~v~~--~~~~~ 337 (355)
T d1nexb2 281 -----------------HTNLSAITTFYVSDN-ILVSGS-EN--QFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTL 337 (355)
T ss_dssp -----------------CTTCCCCCEEEECSS-EEEEEE-TT--EEEEEETTTCCBCCSCTTTTCSEEEEEEE--ETTEE
T ss_pred -----------------cCCceEEEEEcCCCC-EEEEEe-CC--EEEEEECCCCCEEEEEecCCCCCEEEEEE--cCCeE
Confidence 011222 34677776 444443 44 456668888886532 222 222222333 44566
Q ss_pred EEEEeCCCCCCeEEEEE
Q 004149 448 IAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 448 ~~~~s~~~~p~~l~~~~ 464 (771)
+++.+. +..-.|++.+
T Consensus 338 ~~~~s~-dg~~~l~~~d 353 (355)
T d1nexb2 338 VAAVEK-DGQSFLEILD 353 (355)
T ss_dssp EEEEES-SSCEEEEEEE
T ss_pred EEEEEC-CCcEEEEEEe
Confidence 554443 3323344443
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.53 E-value=3.8e-08 Score=107.25 Aligned_cols=131 Identities=20% Similarity=0.132 Sum_probs=88.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc--hHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY--SKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~--~~~~~~la~~G~~V~~~d~rG-~~~~g~~~~~~~~~~ 591 (771)
+.|.+.| -++.|.. ..++.|+|||+|||++....... ......+++.+.+||.++||- .-|+-... .....
T Consensus 88 sEDCL~L--nI~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~~GFl~~~--~~~~~ 161 (532)
T d1ea5a_ 88 SEDCLYL--NIWVPSP--RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEA 161 (532)
T ss_dssp CSCCCEE--EEEECSS--CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSS
T ss_pred CccCCEE--EEEeCCC--CCCCCcEEEEEEcCCcccccCCccccCcchhhcccCccEEEEeeccccccccccc--cccCC
Confidence 3456555 4678874 45679999999998764432221 122334567899999999994 11111100 00111
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCcc
Q 004149 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~ 651 (771)
.+..-+.|...|++|+.++ ..-|+++|.|+|+|.||..+.+++... ..+|..+|+.++..
T Consensus 162 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 162 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred CCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 2233489999999999986 236999999999999999988877631 25799999887654
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=4.1e-08 Score=82.10 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=63.2
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
-+|..++.... +..|.||++||.+.. |. +.| ..+|.|+++|+|| +|.+.. + ..
T Consensus 8 ~~G~~l~y~~~--------G~G~pvlllHG~~~~-----w~---~~L-~~~yrvi~~DlpG---~G~S~~---p----~~ 60 (122)
T d2dsta1 8 LYGLNLVFDRV--------GKGPPVLLVAEEASR-----WP---EAL-PEGYAFYLLDLPG---YGRTEG---P----RM 60 (122)
T ss_dssp ETTEEEEEEEE--------CCSSEEEEESSSGGG-----CC---SCC-CTTSEEEEECCTT---STTCCC---C----CC
T ss_pred ECCEEEEEEEE--------cCCCcEEEEeccccc-----cc---ccc-cCCeEEEEEeccc---cCCCCC---c----cc
Confidence 35666654443 234789999994322 21 223 5699999999999 555421 1 22
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
..+++.+.+..+.+. .+.++..|+||||||.+++++++..+.
T Consensus 61 s~~~~a~~i~~ll~~--L~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 61 APEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccchhHHHHHHHHHH--hCCCCcEEEEeCccHHHHHHHHhhccc
Confidence 355666666666655 345788999999999999999987554
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.5e-08 Score=105.19 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=86.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-h-HHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-S-KSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~-~~~~~la~~G~~V~~~d~rG-~~~~g~~~~~~~~~~ 591 (771)
+.|.+.| -+|.|.. ..++.|+||++|||++....... . ......++.+.+||.++||- .-|+-... .....
T Consensus 86 sEDCL~l--nI~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~~Gfl~~~--~~~~~ 159 (526)
T d1p0ia_ 86 SEDCLYL--NVWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPEA 159 (526)
T ss_dssp CSCCCEE--EEEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTS
T ss_pred CCcCCEE--EEEeCCC--CCCCCceEEEEECCCcccccCcccccCccccccccceeEEecccccccccccCCC--Ccccc
Confidence 3455555 4778874 45678999999998876533321 1 12223456799999999993 11111000 00111
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCcc
Q 004149 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~ 651 (771)
.+..-+.|...|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|..+|+.++..
T Consensus 160 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 160 PGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred cccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 2333489999999999886 23699999999999999999876653 234788888877643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.43 E-value=3.8e-05 Score=76.03 Aligned_cols=228 Identities=13% Similarity=0.128 Sum_probs=123.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...++++|||+ |++. +. ...+|+.+..++....+....... .+++|+|||+ |+.....
T Consensus 30 ~e~iAv~pdG~-l~vt-~~--~~~~I~~i~p~g~~~~~~~~~~~~----------~gla~~~dG~-l~v~~~~------- 87 (302)
T d2p4oa1 30 LENLASAPDGT-IFVT-NH--EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-LVATGWN------- 87 (302)
T ss_dssp EEEEEECTTSC-EEEE-ET--TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-EEEEEEC-------
T ss_pred cCCEEECCCCC-EEEE-eC--CCCEEEEEeCCCCEEEEEcCCCCc----------ceEEEcCCCC-eEEEecC-------
Confidence 45789999998 4333 33 235788888666656555555444 5899999998 3332211
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc--CCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...+++++.. .+....+...+........++.+||+ +
T Consensus 88 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-----~ 126 (302)
T d2p4oa1 88 ------------------------------------ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-----Y 126 (302)
T ss_dssp ------------------------------------TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-----E
T ss_pred ------------------------------------CceEEEEEecccccceeeccccCCccccceeEEccCCC-----E
Confidence 1234444443 33444442133334456778889885 4
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec---------CCCCccccceeecCCCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL---------TESISSAFFPRFSPDGK 329 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l---------t~~~~~~~~p~~SpDG~ 329 (771)
++.. . ....+|.++. .++..... .........-.+++|+.
T Consensus 127 ~v~~-~-------------~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~ 175 (302)
T d2p4oa1 127 LTAD-S-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN 175 (302)
T ss_dssp EEEE-T-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred Eeec-c-------------ccccceeeec-----------------cCCcceeEecCCccceeeccCcccccccccccCC
Confidence 4432 1 2236777765 33221110 00111111123455778
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~ 409 (771)
.+++..... ..|++++............ .. .. .....+++.+||+ |+++...
T Consensus 176 ~l~~~~~~~----------~~i~~~~~~~~~~~~~~~~---~~-------~~-------~~pdgia~d~dG~-l~va~~~ 227 (302)
T d2p4oa1 176 FLYVSNTEK----------MLLLRIPVDSTDKPGEPEI---FV-------EQ-------TNIDDFAFDVEGN-LYGATHI 227 (302)
T ss_dssp EEEEEETTT----------TEEEEEEBCTTSCBCCCEE---EE-------ES-------CCCSSEEEBTTCC-EEEECBT
T ss_pred ceeeecCCC----------CeEEecccccccccccccc---cc-------CC-------CCCcceEECCCCC-EEEEEcC
Confidence 887776543 5789998776543211000 00 01 1245788999997 6666543
Q ss_pred CCeeEEEEEECCCCcEEEecC-C--CCCceeeEE---eecCCEEEEEEeC
Q 004149 410 GSSQVIISVNVSSGELLRITP-A--ESNFSWSLL---TLDGDNIIAVSSS 453 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~~l~~-~--~~~~~~~~~---s~d~~~l~~~~s~ 453 (771)
. ..|++++.+ |+...+.. . ........| ++|++.||++.+.
T Consensus 228 ~--~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 Y--NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp T--CCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C--CcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 3 358888875 55544432 2 122344567 5677888776543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.41 E-value=2.9e-05 Score=76.44 Aligned_cols=238 Identities=14% Similarity=0.113 Sum_probs=137.9
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
..|.|.+....|.|+-- ....|+.++..+....+..++... .++.+.+||+.++- .
T Consensus 21 Egp~wd~~~~~l~wvDi---~~~~I~r~d~~~g~~~~~~~~~~~----------~~i~~~~dg~l~va-~---------- 76 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI---LERELHELHLASGRKTVHALPFMG----------SALAKISDSKQLIA-S---------- 76 (295)
T ss_dssp EEEEEETTTTEEEEEEG---GGTEEEEEETTTTEEEEEECSSCE----------EEEEEEETTEEEEE-E----------
T ss_pred eCCeEECCCCEEEEEEC---CCCEEEEEECCCCeEEEEECCCCc----------EEEEEecCCCEEEE-E----------
Confidence 36999998888988743 234588888444444555655444 57888899865543 1
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC---CccceEEEecCCCCCccEE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS---LSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~---~~~~~~~wspDg~~~~~~l 258 (771)
...|+++|.++++.+.+...... .........|+|+ |
T Consensus 77 -----------------------------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-----i 116 (295)
T d2ghsa1 77 -----------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-----L 116 (295)
T ss_dssp -----------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-----E
T ss_pred -----------------------------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-----E
Confidence 14689999999998877322221 2456778899997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+|....... ......+|.++ .++.+.+.........+.||||++.+++.....
T Consensus 117 w~~~~~~~~--------~~~~g~l~~~~-------------------~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 117 WIGTMGRKA--------ETGAGSIYHVA-------------------KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp EEEEEETTC--------CTTCEEEEEEE-------------------TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EEEeccccc--------cccceeEeeec-------------------CCcEEEEeeccCCcceeeecCCCceEEEeeccc
Confidence 776643221 11223556554 244555544444456789999999998887653
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|++++++........ ....... ...... ....++.-.+|. |+++.- . ...|+++
T Consensus 170 ----------~~I~~~~~d~~~~~~~~-~~~~~~~---~~~~~g-------~pdG~~vD~~Gn-lWva~~-~-~g~V~~~ 225 (295)
T d2ghsa1 170 ----------NRLMRVPLDARTGLPTG-KAEVFID---STGIKG-------GMDGSVCDAEGH-IWNARW-G-EGAVDRY 225 (295)
T ss_dssp ----------CEEEEEEBCTTTCCBSS-CCEEEEE---CTTSSS-------EEEEEEECTTSC-EEEEEE-T-TTEEEEE
T ss_pred ----------ceeeEeeeccccccccc-ceEEEec---cCcccc-------cccceEEcCCCC-EEeeee-C-CCceEEe
Confidence 46888887543321111 1100111 000011 122445666775 544332 2 2368888
Q ss_pred ECCCCcEEEecCCCCCceeeEEe-ecCCEEEEEEeCC
Q 004149 419 NVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSP 454 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s-~d~~~l~~~~s~~ 454 (771)
+.++..+..+..+........|- +|.+.||.+..+.
T Consensus 226 dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 226 DTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp CTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred cCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence 88665566665443334445564 5777777766543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.36 E-value=3.8e-05 Score=80.26 Aligned_cols=230 Identities=11% Similarity=0.128 Sum_probs=130.3
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+.++||||++|||..... |.....|+++|+++|+.....
T Consensus 128 ~~~~~Spd~~~la~s~d~~---------------------------------------G~e~~~l~v~Dl~tg~~~~~~- 167 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSAS---------------------------------------GSDWVTIKFMKVDGAKELPDV- 167 (430)
T ss_dssp EEEEECTTSSEEEEEEEET---------------------------------------TCSCEEEEEEETTTTEEEEEE-
T ss_pred cceEecCCCCEEEEEeccc---------------------------------------cCchheeEEeccCcceecccc-
Confidence 4678999999999986543 224579999999999865441
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcc-eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceec
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET-RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNL 312 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~-~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~l 312 (771)
+ .....+.++|++|++. |+|+...... ...+..-..+++..+|+..+ .+.. -+.+
T Consensus 168 i-~~~~~~~~~W~~D~~~----~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~l-----------------gt~~~~d~~v 225 (430)
T d1qfma1 168 L-ERVKFSCMAWTHDGKG----MFYNAYPQQDGKSDGTETSTNLHQKLYYHVL-----------------GTDQSEDILC 225 (430)
T ss_dssp E-EEECSCCEEECTTSSE----EEEEECCCCSSCCSSSCCCCCCCCEEEEEET-----------------TSCGGGCEEE
T ss_pred c-ccccccceEEcCCCCE----EEEEEeccccCcccccccccCCcceEEEEEC-----------------CCCccccccc
Confidence 1 1223467899999999 9998754321 11112223456678999998 3322 2223
Q ss_pred CCC---CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC
Q 004149 313 TES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 313 t~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
... .........|+||++|+....... .....+|..|+............ ...++.. .
T Consensus 226 ~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~-----~------ 286 (430)
T d1qfma1 226 AEFPDEPKWMGGAELSDDGRYVLLSIREGC------DPVNRLWYCDLQQESNGITGILK--WVKLIDN-----F------ 286 (430)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECSS------SSCCEEEEEEGGGSSSSSCSSCC--CEEEECS-----S------
T ss_pred cccccCCceEEeeeccCCcceeeEEeeccC------CccEEEEEeeCCCcccccccccc--eeEeecc-----c------
Confidence 222 223445678999999877665431 22456888887653321111000 0011100 0
Q ss_pred CCCCCc-cccCCCEEEEEeeeCC-eeEEEEEECCCCc---EEEecCC-CCCceeeEEeecCCEEEEEEeCCCCCCeEEEE
Q 004149 390 SILSNP-WLSDGCTMLLSSIWGS-SQVIISVNVSSGE---LLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 390 ~~~~~~-~s~dg~~l~~~~~~~~-~~~l~~~d~~tg~---~~~l~~~-~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~ 463 (771)
..... ...+|..+++.++.++ ...|+.++++... .+.+... ........++..++.|++.... +.-++|.+.
T Consensus 287 -~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~-~~~~~l~v~ 364 (430)
T d1qfma1 287 -EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLH 364 (430)
T ss_dssp -SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEE
T ss_pred -ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc-CCEeEEEEE
Confidence 00111 1235556777666443 4679999887643 3444433 3333334556667777666543 455668887
Q ss_pred Eeccc
Q 004149 464 YFVDK 468 (771)
Q Consensus 464 ~~~~~ 468 (771)
++.++
T Consensus 365 ~~~~~ 369 (430)
T d1qfma1 365 DLATG 369 (430)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 76544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=1.5e-05 Score=82.24 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=87.6
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-------eecC
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-------VNLT 313 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~lt 313 (771)
.+..++||||| . |+..+ .+..|.++|+ .+++. ..+.
T Consensus 186 ~~~~v~~s~dg-~----lasgs---------------~Dg~i~iwd~-----------------~~~~~~~~~~~~~~l~ 228 (393)
T d1sq9a_ 186 FATSVDISERG-L----IATGF---------------NNGTVQISEL-----------------STLRPLYNFESQHSMI 228 (393)
T ss_dssp CCCEEEECTTS-E----EEEEC---------------TTSEEEEEET-----------------TTTEEEEEEECCC---
T ss_pred cEEEEEECCCC-E----EEEEe---------------CCCcEEEEee-----------------cccccccccccccccc
Confidence 35678999997 3 65433 3346888887 44332 2234
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+...+.+.+|||||+.|+..+.+.. ...|.+||++++............... ...+.| +...+..
T Consensus 229 ~h~~~V~~l~~spdg~~l~sgs~D~t--------~~~i~lwd~~~g~~~~~l~~~~~~~~~-----~~~~~g-H~~~V~~ 294 (393)
T d1sq9a_ 229 NNSNSIRSVKFSPQGSLLAIAHDSNS--------FGCITLYETEFGERIGSLSVPTHSSQA-----SLGEFA-HSSWVMS 294 (393)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETT--------EEEEEEEETTTCCEEEEECBC-------------CCBS-BSSCEEE
T ss_pred cccceEEEcccccccceeeeecCCCC--------cceeeecccccceeeeeeccccccccc-----eeeeec-ccCceee
Confidence 45667889999999999988876631 245778898887643211110000000 001111 2223567
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-Cc----eeeEEeecCCEE
Q 004149 394 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NF----SWSLLTLDGDNI 447 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~----~~~~~s~d~~~l 447 (771)
++|+|||+.| ++...++...|| |+++|+......... .+ ....++++++.+
T Consensus 295 l~fspd~~~l-~S~s~D~~v~vW--d~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 295 LSFNDSGETL-CSAGWDGKLRFW--DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp EEECSSSSEE-EEEETTSEEEEE--ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred eccCCCCCee-EEECCCCEEEEE--ECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence 8999999854 676667766666 888887665443322 11 124577777654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.29 E-value=2.5e-05 Score=77.71 Aligned_cols=267 Identities=11% Similarity=0.037 Sum_probs=140.0
Q ss_pred cceEEEeCCCCCeEEEEecCCC----CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPEN----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
....|+|.|||+ |.|+..... ...+++.++..+.....+..+.... ..+.-.++.|+|||..|+.. ..
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~----~~g~P~Gl~~~~dg~~l~va-d~-- 90 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG----YGGIPAGCQCDRDANQLFVA-DM-- 90 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT----EECCEEEEEECSSSSEEEEE-ET--
T ss_pred CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCcccc----CCCcceeEEEeCCCCEEEEE-EC--
Confidence 356799999997 445543321 1235777773333333332211100 00011478999999866543 21
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC---ccceEEEecCCC
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL---SVGQVVWAPLNE 252 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~---~~~~~~wspDg~ 252 (771)
...|++++.+++....+....... ....+++.|||.
T Consensus 91 -----------------------------------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~ 129 (314)
T d1pjxa_ 91 -----------------------------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN 129 (314)
T ss_dssp -----------------------------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC
T ss_pred -----------------------------------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC
Confidence 245888898877655442111111 356789999996
Q ss_pred CCccEEEEEeecCcce-eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC--
Q 004149 253 GLHQYLVFVGWSSETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK-- 329 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~-~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~-- 329 (771)
|+|+....... .............||+++. + ++...+...........|+||++
T Consensus 130 -----lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-----------------d-g~~~~~~~~~~~pNGi~~~~d~d~~ 186 (314)
T d1pjxa_ 130 -----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----------------D-GQMIQVDTAFQFPNGIAVRHMNDGR 186 (314)
T ss_dssp -----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----------------T-SCEEEEEEEESSEEEEEEEECTTSC
T ss_pred -----EEEecCccCcccccccceeccCCceEEEEee-----------------c-CceeEeeCCcceeeeeEECCCCCcc
Confidence 77764211100 0000000123347888885 3 33444433333345678999875
Q ss_pred --EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 330 --FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 330 --~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
+|++.... ...|+++|+...+.. . ...+...+ ..... .....+++-++|+ |+++.
T Consensus 187 ~~~lyv~d~~----------~~~i~~~d~~~~g~~--~--~~~~~~~~----~~~~~----~~pdGiavD~~Gn-lyVa~ 243 (314)
T d1pjxa_ 187 PYQLIVAETP----------TKKLWSYDIKGPAKI--E--NKKVWGHI----PGTHE----GGADGMDFDEDNN-LLVAN 243 (314)
T ss_dssp EEEEEEEETT----------TTEEEEEEEEETTEE--E--EEEEEEEC----CCCSS----CEEEEEEEBTTCC-EEEEE
T ss_pred eeEEEEEeec----------ccceEEeeccCcccc--c--eeeEEEEc----ccccc----ccceeeEEecCCc-EEEEE
Confidence 45554432 357999887654321 0 00010000 00000 0122456777886 65543
Q ss_pred eeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 408 IWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
. +...|++++.+++++. .+...........|.+|++.|+.+.+.. .+|+++++.
T Consensus 244 ~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~---g~i~~~~~~ 298 (314)
T d1pjxa_ 244 W--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp E--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECS
T ss_pred c--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC---CcEEEEECC
Confidence 2 3356888999888754 3443333345578888998887766432 467877754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.25 E-value=3.9e-06 Score=86.40 Aligned_cols=196 Identities=8% Similarity=-0.018 Sum_probs=94.8
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC----
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 121 (771)
+...++||++|... +. ....+.++++ ...+..++..-+. ..+....++||||+++.+......
T Consensus 76 ~t~gtpDGr~lfV~-d~-------~~~rVavIDl--~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~~~v~~ 142 (441)
T d1qnia2 76 MTDGRYDGKYLFIN-DK-------ANTRVARIRL--DIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAEFVIPQ 142 (441)
T ss_dssp EETTEEEEEEEEEE-ET-------TTTEEEEEET--TTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred eecccCCCCEEEEE-cC-------CCCEEEEEEC--CCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccCCcccc
Confidence 34446799887554 32 2346777665 3334444433221 134667899999998755432211
Q ss_pred ----------CCCeEEE-Ee-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004149 122 ----------ESPIQFE-LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 122 ----------~~~~~~~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
.....+. ++ ........+.+.... ..+.|||||++++..+....... .+.......
T Consensus 143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p----------~~v~~spdGk~a~vt~~nse~~~-~id~~t~~~- 210 (441)
T d1qnia2 143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNL----------DNTDADYTGKYATSTCYNSERAV-DLAGTMRND- 210 (441)
T ss_dssp SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCC----------CCEEECSSSSEEEEEESCTTCCS-SHHHHTCSS-
T ss_pred cCcccccccccccceEEeecCccceeeEEEecCCCc----------cceEECCCCCEEEEEecCCCceE-EEeccCcce-
Confidence 0011222 22 111222222333333 58999999998876654432211 110000000
Q ss_pred CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee
Q 004149 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 269 (771)
Q Consensus 190 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~ 269 (771)
........|.....+.+|.+.... .....+.+.+..+.++... ++....+..+..||||++ ++... .
T Consensus 211 ~d~i~v~n~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~--IPvgksPhGv~vSPDGky----l~~~~-~----- 277 (441)
T d1qnia2 211 RDWVVVFNVERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRY--IPVPKNPHGLNTSPDGKY----FIANG-K----- 277 (441)
T ss_dssp BCEEEEEEHHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEE--ECCBSSCCCEEECTTSCE----EEEEC-T-----
T ss_pred EEEEEeCCccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEE--EeCCCCccCceECCCCCE----EEEeC-C-----
Confidence 000001111112234555332222 2234445555555555544 455556778999999996 65554 2
Q ss_pred eeeeeeccCCceeEEEec
Q 004149 270 LGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 270 ~g~~~~~~~~~~l~~~d~ 287 (771)
....+-++|+
T Consensus 278 --------~~~tvsv~d~ 287 (441)
T d1qnia2 278 --------LSPTVSVIAI 287 (441)
T ss_dssp --------TSSBEEEEEG
T ss_pred --------cCCcEEEEEe
Confidence 2236888887
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=3.1e-05 Score=75.72 Aligned_cols=143 Identities=10% Similarity=-0.000 Sum_probs=77.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.+|++...+.......+....+..++|||||+. |+..+ ....|.++|+
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~g~---------------~dg~i~i~d~---------- 191 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY----IAAGD---------------VMGKILLYDL---------- 191 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET----------
T ss_pred ceeeeeeccccceeeeeeeccCCceeEEEeccCccc----ccccc---------------ccccccceee----------
Confidence 457788876554333211334446788999999997 76654 2336888887
Q ss_pred hhhcCCCCCCcc--eecCCCCccccceeecCCCCEEEEEecCCCCC-CCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 298 ELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLVFLSAKSSVD-SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 298 ~~~~~~~~~~~~--~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~-~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+.. ..+..+...+....|+|+++.......+.... .| .....|++||+..+.... ..
T Consensus 192 -------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg--s~D~~i~iw~~~~~~~~~---------~~ 253 (287)
T d1pgua2 192 -------QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG--SLDTNIFIYSVKRPMKII---------KA 253 (287)
T ss_dssp -------TTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE--ETTSCEEEEESSCTTCCE---------EE
T ss_pred -------cccccccccccccccccceeeecccccccccccCCCCeeEee--cCCCeEEEEECCCCCeEE---------EE
Confidence 44432 23444555677888988775433322221100 00 112468889986533210 00
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.. .+...+..+.|++|++ | ++...++...||.|
T Consensus 254 ~~---------~h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW~i 286 (287)
T d1pgua2 254 LN---------AHKDGVNNLLWETPST-L-VSSGADACIKRWNV 286 (287)
T ss_dssp TT---------SSTTCEEEEEEEETTE-E-EEEETTSCEEEEEE
T ss_pred eC---------CCCCCeEEEEECCCCE-E-EEEECCCeEEEEEE
Confidence 00 0112355778999874 4 56666778888864
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.17 E-value=1.8e-06 Score=88.91 Aligned_cols=190 Identities=12% Similarity=0.047 Sum_probs=98.6
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceee---eeeeeccC-CceeEEEeccccc
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL---GIKYCYNR-PCALYAVRVSLYK 291 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~---g~~~~~~~-~~~l~~~d~~~~~ 291 (771)
..+.|.++|+++.++..+..++....+...+++|||+. +++..+....-.+ |.....+. ...+-.+|.
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t----~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~---- 163 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT----NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA---- 163 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC----CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET----
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE----EEEEeccCCcccccCcccccccccccceEEeecC----
Confidence 34789999999998776532455567788999999998 6554432211000 00000001 112233554
Q ss_pred chhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004149 292 SEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
.+.+. .++. -.+......|||||+++++.+... ..+..++..+.....
T Consensus 164 -------------~t~~v~~qI~-v~~~p~~v~~spdGk~a~vt~~ns----------e~~~~id~~t~~~~d------- 212 (441)
T d1qnia2 164 -------------ETMDVAWQVI-VDGNLDNTDADYTGKYATSTCYNS----------ERAVDLAGTMRNDRD------- 212 (441)
T ss_dssp -------------TTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCT----------TCCSSHHHHTCSSBC-------
T ss_pred -------------ccceeeEEEe-cCCCccceEECCCCCEEEEEecCC----------CceEEEeccCcceEE-------
Confidence 33332 2222 223467899999999887666543 123333433333211
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE-CCCCc-EEEecCCCCCceeeEEeecCCEEE
Q 004149 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN-VSSGE-LLRITPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d-~~tg~-~~~l~~~~~~~~~~~~s~d~~~l~ 448 (771)
.+.+... .....+++||+.++. .+.. ...++ ..+.+ +..|..+.. .....+||||++++
T Consensus 213 ~i~v~n~-------------p~~~~~~~dGk~~~v----~~~~-v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~ 273 (441)
T d1qnia2 213 WVVVFNV-------------ERIAAAVKAGNFKTI----GDSK-VPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFI 273 (441)
T ss_dssp EEEEEEH-------------HHHHHHHHTTCCBCC----TTCC-CCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEE
T ss_pred EEEeCCc-------------cceEEEecCCCEEEe----CCCC-cEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEE
Confidence 1111110 123356889985533 1112 22333 33333 444444333 44578999999887
Q ss_pred EEEeCCCCCCeEEEEEec
Q 004149 449 AVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 449 ~~~s~~~~p~~l~~~~~~ 466 (771)
++.. .-..+.++++.
T Consensus 274 ~~~~---~~~tvsv~d~~ 288 (441)
T d1qnia2 274 ANGK---LSPTVSVIAID 288 (441)
T ss_dssp EECT---TSSBEEEEEGG
T ss_pred EeCC---cCCcEEEEEee
Confidence 6642 23346676654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=3.4e-05 Score=77.34 Aligned_cols=271 Identities=7% Similarity=-0.015 Sum_probs=131.3
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
.+++||++||..+..+ .+.+|+ .++..+.+.. ..+ .+.+++||||+ .|+..+.+...+ .|.
T Consensus 18 c~~~~~~~l~tgs~Dg-----~i~vWd~~~~~~~~~l~~---H~~------~V~~l~~s~~~-~l~s~s~D~~i~--iw~ 80 (355)
T d1nexb2 18 CLQFEDNYVITGADDK-----MIRVYDSINKKFLLQLSG---HDG------GVWALKYAHGG-ILVSGSTDRTVR--VWD 80 (355)
T ss_dssp EEEEETTEEEEEETTT-----EEEEEETTTTEEEEEEEC---CSS------CEEEEEEETTT-EEEEEETTCCEE--EEE
T ss_pred EEEECCCEEEEEeCCC-----eEEEEECCCCcEEEEEEC---CCC------CEEEEEEcCCC-EEEEEecccccc--ccc
Confidence 5678899888765443 567773 3333332221 111 23689999976 576666554322 222
Q ss_pred CCCCCCCCCCcc--CCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC----------CCCC----------
Q 004149 183 LGSTKGGSSDKD--CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----------PKSL---------- 240 (771)
Q Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~----------~~~~---------- 240 (771)
............ .........+.++....+.+.....|.+||+.++........ +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence 111100000000 000001122344444444555678899999877653322100 0000
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 319 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~ 319 (771)
...-..+.++++. ++... ....|..+|+ .+++ ...........
T Consensus 161 ~~~v~~~~~~~~~----~~~~~---------------~d~~i~~~d~-----------------~~~~~~~~~~~~~~~~ 204 (355)
T d1nexb2 161 MASVRTVSGHGNI----VVSGS---------------YDNTLIVWDV-----------------AQMKCLYILSGHTDRI 204 (355)
T ss_dssp SSCEEEEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCE
T ss_pred cccccccccccce----eeeec---------------ccceeeeeec-----------------ccccceeeeecccccc
Confidence 0011234445543 33322 3346788887 4443 33444455567
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccC
Q 004149 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 399 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~d 399 (771)
....|+|+++.++..+.+. .|.++|+.++........ +...+..+.| +
T Consensus 205 ~~~~~~~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~~~-------------------h~~~v~~~~~--~ 252 (355)
T d1nexb2 205 YSTIYDHERKRCISASMDT-----------TIRIWDLENGELMYTLQG-------------------HTALVGLLRL--S 252 (355)
T ss_dssp EEEEEETTTTEEEEEETTS-----------CEEEEETTTCCEEEEECC-------------------CSSCCCEEEE--C
T ss_pred ccccccccceeeecccccc-----------eEEeeecccccccccccc-------------------cccccccccc--c
Confidence 7889999999988777553 488888877553211100 0012333444 4
Q ss_pred CCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 400 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 400 g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
++.| ++...++... .+|+.++................++++++ ++++.+. ..|.+.++.++
T Consensus 253 ~~~l-~~~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~d----~~i~vwd~~tg 313 (355)
T d1nexb2 253 DKFL-VSAAADGSIR--GWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGSE----NQFNIYNLRSG 313 (355)
T ss_dssp SSEE-EEECTTSEEE--EEETTTCCEEEEEECTTCCCCCEEEECSS-EEEEEET----TEEEEEETTTC
T ss_pred ccee-eeeecccccc--cccccccceecccccCCceEEEEEcCCCC-EEEEEeC----CEEEEEECCCC
Confidence 5544 5555555544 45777765443332222223345566665 4444442 35777776554
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=9.5e-06 Score=83.93 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=87.9
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+||||| .||..+.++ .+.+|+ .++............+ -...+.+++|||||+.|+..+.+.
T Consensus 187 ~~~v~~s~dg-~lasgs~Dg-----~i~iwd~~~~~~~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~sgs~D~---- 253 (393)
T d1sq9a_ 187 ATSVDISERG-LIATGFNNG-----TVQISELSTLRPLYNFESQHSMIN---NSNSIRSVKFSPQGSLLAIAHDSN---- 253 (393)
T ss_dssp CCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEEEEEECCC---C---CCCCEEEEEECSSTTEEEEEEEET----
T ss_pred EEEEEECCCC-EEEEEeCCC-----cEEEEeeccccccccccccccccc---ccceEEEcccccccceeeeecCCC----
Confidence 5678999998 555433322 456663 3333332222111100 012336899999999998876553
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC------------CCCCCccceEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG------------IPKSLSVGQVV 246 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~------------~~~~~~~~~~~ 246 (771)
....|.+||+++++...... ......+..++
T Consensus 254 -------------------------------------t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~ 296 (393)
T d1sq9a_ 254 -------------------------------------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296 (393)
T ss_dssp -------------------------------------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred -------------------------------------CcceeeecccccceeeeeeccccccccceeeeecccCceeeec
Confidence 12467888888876543210 01233577899
Q ss_pred EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCcc----ccc
Q 004149 247 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISS----AFF 321 (771)
Q Consensus 247 wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~----~~~ 321 (771)
|||||+. |+-.+ .+..|.++|+ .++++ ..|..+... ...
T Consensus 297 fspd~~~----l~S~s---------------~D~~v~vWd~-----------------~~g~~~~~l~gH~~~v~~~~~~ 340 (393)
T d1sq9a_ 297 FNDSGET----LCSAG---------------WDGKLRFWDV-----------------KTKERITTLNMHCDDIEIEEDI 340 (393)
T ss_dssp ECSSSSE----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECCGGGCSSGGGC
T ss_pred cCCCCCe----eEEEC---------------CCCEEEEEEC-----------------CCCCEEEEECCcCCcccCCccE
Confidence 9999997 76655 3447889998 55654 445554433 346
Q ss_pred eeecCCCCEEE
Q 004149 322 PRFSPDGKFLV 332 (771)
Q Consensus 322 p~~SpDG~~l~ 332 (771)
+.|+|+|+.++
T Consensus 341 ~~~~~~~~~~~ 351 (393)
T d1sq9a_ 341 LAVDEHGDSLA 351 (393)
T ss_dssp CCBCTTSCBCS
T ss_pred EEECCCCCEEE
Confidence 88999998764
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=98.04 E-value=1.8e-06 Score=85.07 Aligned_cols=112 Identities=11% Similarity=0.035 Sum_probs=71.0
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..+|++|++||...+........... +|....+.|+++|++..... .+.... .......+.+...|++|.+...+
T Consensus 68 ~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~--~n~~~Vg~~ia~~i~~l~~~~g~ 143 (337)
T d1rp1a2 68 TDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAA--NNVRVVGAQVAQMLSMLSANYSY 143 (337)
T ss_dssp TTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHH--HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHH--HHHHHHHHHHHHHHHHHHHhcCC
Confidence 46799999999765543323333333 45556699999999641110 000000 00011134556677777776568
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
+.+++.|+|||+||++|..+.. +...+..++...|..
T Consensus 144 ~~~~vhlIGhSLGAhvAG~aG~-~~~~l~rItgLDPA~ 180 (337)
T d1rp1a2 144 SPSQVQLIGHSLGAHVAGEAGS-RTPGLGRITGLDPVE 180 (337)
T ss_dssp CGGGEEEEEETHHHHHHHHHHH-TSTTCCEEEEESCCC
T ss_pred ChhheEEEeecHHHhhhHHHHH-hhccccceeccCCCc
Confidence 8999999999999999986655 455677888777754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.03 E-value=0.00014 Score=72.35 Aligned_cols=216 Identities=9% Similarity=0.031 Sum_probs=112.1
Q ss_pred cceEEEeCCCCCeEEEEecC-CCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNP-ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....+++|||+.++ +... ......++.++ .++....+........ ....+.+.|||+ |++.......
T Consensus 83 ~p~gla~~~dG~l~v-a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~nd~~~d~~G~-l~vtd~~~~~- 152 (319)
T d2dg1a1 83 NPAAIKIHKDGRLFV-CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY-------CIDDMVFDSKGG-FYFTDFRGYS- 152 (319)
T ss_dssp SEEEEEECTTSCEEE-EECTTSSSCCEEEEECTTSCSCEEEECSSSSCC-------CEEEEEECTTSC-EEEEECCCBT-
T ss_pred CeeEEEECCCCCEEE-EecCCCccceeEEEEcCCCceeeeeccCCCccc-------CCcceeEEeccc-eeeccccccc-
Confidence 356788999997543 3221 11334566666 4444444433211110 124678999996 5554221100
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
......++.++.+++.++.+ ...-.....++|+|||+.
T Consensus 153 ------------------------------------~~~~g~v~~~~~dg~~~~~~--~~~~~~pnGia~s~dg~~---- 190 (319)
T d2dg1a1 153 ------------------------------------TNPLGGVYYVSPDFRTVTPI--IQNISVANGIALSTDEKV---- 190 (319)
T ss_dssp ------------------------------------TBCCEEEEEECTTSCCEEEE--EEEESSEEEEEECTTSSE----
T ss_pred ------------------------------------ccCcceeEEEecccceeEEE--eeccceeeeeeeccccce----
Confidence 01235788899888877766 233234567899999997
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-------CCCCccccceeecCCCCE
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPDGKF 330 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-------t~~~~~~~~p~~SpDG~~ 330 (771)
|+++.. ....|+.++++. ++...... ..........++.+||+
T Consensus 191 lyvad~--------------~~~~I~~~d~~~---------------~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~- 240 (319)
T d2dg1a1 191 LWVTET--------------TANRLHRIALED---------------DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN- 240 (319)
T ss_dssp EEEEEG--------------GGTEEEEEEECT---------------TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-
T ss_pred EEEecc--------------cCCceEEEEEcC---------------CCceeccccceeeeccCCccceeeeeEcCCCC-
Confidence 766531 223788888731 11111111 11112234567778887
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 409 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~- 409 (771)
|+..... ...|.++|-+ |+. +..+..+... ++ .+.....++|.+++..++.++..
T Consensus 241 l~Va~~~----------~g~V~~~~p~-G~~----------l~~i~~P~~~--~~-~~~~~~~~~~~~~~~~~~~t~~~~ 296 (319)
T d2dg1a1 241 LYVAMYG----------QGRVLVFNKR-GYP----------IGQILIPGRD--EG-HMLRSTHPQFIPGTNQLIICSNDI 296 (319)
T ss_dssp EEEEEET----------TTEEEEECTT-SCE----------EEEEECTTGG--GT-CSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEEcC----------CCEEEEECCC-CcE----------EEEEeCCCcC--CC-cCceeeeEEEeCCCCEEEEEcCCC
Confidence 4333322 2468888743 332 1111111100 00 01123456788888777766542
Q ss_pred --CCeeEEEEEECC
Q 004149 410 --GSSQVIISVNVS 421 (771)
Q Consensus 410 --~~~~~l~~~d~~ 421 (771)
.+...||+++..
T Consensus 297 ~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 297 EMGGGSMLYTVNGF 310 (319)
T ss_dssp GGTCCEEEEEEECS
T ss_pred CcCCceeEEEEeCC
Confidence 345678888764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.01 E-value=0.00038 Score=68.44 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=47.7
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
.++++||+ |.+ .+.. .+.||.++ .++ ....+...+ +.....+++|||+.+ ++.... +....
T Consensus 33 iAv~pdG~-l~v-t~~~-------~~~I~~i~--p~g-~~~~~~~~~-----~~~~gla~~~dG~l~-v~~~~~-~~~~~ 93 (302)
T d2p4oa1 33 LASAPDGT-IFV-TNHE-------VGEIVSIT--PDG-NQQIHATVE-----GKVSGLAFTSNGDLV-ATGWNA-DSIPV 93 (302)
T ss_dssp EEECTTSC-EEE-EETT-------TTEEEEEC--TTC-CEEEEEECS-----SEEEEEEECTTSCEE-EEEECT-TSCEE
T ss_pred EEECCCCC-EEE-EeCC-------CCEEEEEe--CCC-CEEEEEcCC-----CCcceEEEcCCCCeE-EEecCC-ceEEE
Confidence 35578996 433 3332 24677754 333 333333332 456788999999843 332222 22223
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe
Q 004149 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL 166 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~ 166 (771)
+... ..+....+....... ....+.+.+||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~--------~~n~i~~~~~g~~ 126 (302)
T d2p4oa1 94 VSLVKSDGTVETLLTLPDAI--------FLNGITPLSDTQY 126 (302)
T ss_dssp EEEECTTSCEEEEEECTTCS--------CEEEEEESSSSEE
T ss_pred EEecccccceeeccccCCcc--------ccceeEEccCCCE
Confidence 3333 334444554443221 1247889999953
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.99 E-value=9.6e-05 Score=72.00 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=84.1
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004149 104 VVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
.+++|+++.+++....+ + ...+|+-..............+ ....++|||||++|+....
T Consensus 124 ~~~~~~~~~~~v~~~~~-~---~v~~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~g~~----------- 182 (287)
T d1pgua2 124 SAVSLSQNYVAVGLEEG-N---TIQVFKLSDLEVSFDLKTPLRA------KPSYISISPSETYIAAGDV----------- 182 (287)
T ss_dssp EEEEECSSEEEEEETTT-S---CEEEEETTEEEEEEECSSCCSS------CEEEEEECTTSSEEEEEET-----------
T ss_pred eeeeccCcceeeecccc-c---eeeeeeccccceeeeeeeccCC------ceeEEEeccCccccccccc-----------
Confidence 45677787777654432 1 2334422222222222211111 2268889999998877532
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004149 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
...|.+||+.+++.....-......+..++|+|+++. ......
T Consensus 183 ---------------------------------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~~~~~~ 225 (287)
T d1pgua2 183 ---------------------------------MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG----ANEEEI 225 (287)
T ss_dssp ---------------------------------TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----------CC
T ss_pred ---------------------------------cccccceeecccccccccccccccccceeeecccccc----cccccC
Confidence 3578999998887544311333456788999998764 332221
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecC
Q 004149 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
... +......+..|+++|+. ..++ ...+..+...+....|+||++ |+..+.+
T Consensus 226 ~~~-----~l~sgs~D~~i~iw~~~----------------~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D 278 (287)
T d1pgua2 226 EED-----LVATGSLDTNIFIYSVK----------------RPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 278 (287)
T ss_dssp SCC-----EEEEEETTSCEEEEESS----------------CTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred CCC-----eeEeecCCCeEEEEECC----------------CCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECC
Confidence 110 00111234478888872 2233 445556677789999999975 6655544
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=1.2e-05 Score=76.92 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=63.3
Q ss_pred CCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004149 534 CSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~--G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
..+.| ||++||-+.+. ....+......+.++ |+.|+++++..... ....... ...+++..+.+...++.
T Consensus 3 ~~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~--~~~~~~~-----~~~~~~~~e~v~~~I~~ 74 (279)
T d1ei9a_ 3 PAPLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLR--EDVENSF-----FLNVNSQVTTVCQILAK 74 (279)
T ss_dssp TSSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHH--HHHHHHH-----HSCHHHHHHHHHHHHHS
T ss_pred CCCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCcc--cccccch-----hhhHHHHHHHHHHHHHh
Confidence 34556 77899965432 233566666677655 99999999754110 1000110 01233333333333332
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCC-ceeEEEecCC
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 649 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p 649 (771)
.....++|-++||||||.++-.++.+++. .+..+|..++
T Consensus 75 ~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 75 DPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp CGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred ccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 21234689999999999999999998865 4666665554
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.95 E-value=4e-06 Score=82.29 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=73.3
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+..+|++|++||............... +|....+.|+++|+...... .+..... + ....-+.+...|+.|.....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~-n-~~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASY-N-TRVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHH-H-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHH-h-HHHHHHHHHHHHHHHHHhcC
Confidence 356799999999655443333333443 45556699999998641110 0000000 0 00112344456666665555
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.+++.|+|||+||++|..+..+.+.++..++...|..
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 889999999999999999999887777788888877764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.001 Score=65.48 Aligned_cols=182 Identities=11% Similarity=-0.038 Sum_probs=99.0
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
+.+.....+.++|+..++.... .... ......+++|++. |+..+ ....|.++|+
T Consensus 151 ~~~~~d~~i~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~----l~s~~---------------~dg~i~~~d~---- 204 (342)
T d2ovrb2 151 VSGAYDFMVKVWDPETETCLHT--LQGH-TNRVYSLQFDGIH----VVSGS---------------LDTSIRVWDV---- 204 (342)
T ss_dssp EEEETTSCEEEEEGGGTEEEEE--ECCC-SSCEEEEEECSSE----EEEEE---------------TTSCEEEEET----
T ss_pred eeecCCCeEEEeecccceeeEE--EcCc-ccccccccCCCCE----EEEEe---------------CCCeEEEeec----
Confidence 3344567889999887765444 2222 3345577889886 77655 3346888887
Q ss_pred chhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004149 292 SEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
..++ ...+..+...+.. ++++++.|+..+.+ ..|.+||+...+.......
T Consensus 205 -------------~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~~~~~~~--- 255 (342)
T d2ovrb2 205 -------------ETGNCIHTLTGHQSLTSG--MELKDNILVSGNAD-----------STVKIWDIKTGQCLQTLQG--- 255 (342)
T ss_dssp -------------TTCCEEEEECCCCSCEEE--EEEETTEEEEEETT-----------SCEEEEETTTCCEEEEECS---
T ss_pred -------------ccceeeeEecccccceeE--EecCCCEEEEEcCC-----------CEEEEEecccccccccccc---
Confidence 4444 3444444444444 45566777766654 3588888776543211000
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCC-----CCceeeEEeecC
Q 004149 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAE-----SNFSWSLLTLDG 444 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~-----~~~~~~~~s~d~ 444 (771)
. ........+++.+++.+ ++...++. |..+|+.+|+.. .+.... ..+....+++++
T Consensus 256 -------~--------~~~~~~~~~~~~~~~~~-~s~s~Dg~--i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~ 317 (342)
T d2ovrb2 256 -------P--------NKHQSAVTCLQFNKNFV-ITSSDDGT--VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 317 (342)
T ss_dssp -------T--------TSCSSCEEEEEECSSEE-EEEETTSE--EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred -------c--------ceeeeceeecccCCCee-EEEcCCCE--EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC
Confidence 0 00011223345566644 55555555 445588888764 332211 123445677776
Q ss_pred CEEEEEEeCCCCCCeEEEEEec
Q 004149 445 DNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 445 ~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
..++....+.+.-..|++.|+.
T Consensus 318 ~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 318 LVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEEECSSSSSCCEEEEEECC
T ss_pred CEEEEEeCCCCCeeEEEEEeCC
Confidence 5444444444455667777654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.91 E-value=2.9e-05 Score=77.24 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=38.8
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+...+|||+|++|+..+.+. .|.+||+.+++........ ......+|+
T Consensus 253 ~v~~l~~sp~~~~lasg~~Dg-----------~v~vWD~~~~~~l~~~~~~--------------------~~~~~~~~s 301 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAGSDG-----------IISCWNLQTRKKIKNFAKF--------------------NEDSVVKIA 301 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTS-----------CEEEEETTTTEEEEECCCC--------------------SSSEEEEEE
T ss_pred cceeEEecCCccEEEEECCCC-----------EEEEEECCCCcEEEEecCC--------------------CCCEEEEEE
Confidence 456789999999988777653 5899998876532110000 012245789
Q ss_pred cCCCEEEEEee
Q 004149 398 SDGCTMLLSSI 408 (771)
Q Consensus 398 ~dg~~l~~~~~ 408 (771)
++|+.|++.+.
T Consensus 302 ~~~~~l~~a~s 312 (342)
T d1yfqa_ 302 CSDNILCLATS 312 (342)
T ss_dssp ECSSEEEEEEE
T ss_pred eCCCEEEEEEc
Confidence 99997766554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.005 Score=58.67 Aligned_cols=182 Identities=8% Similarity=-0.033 Sum_probs=108.4
Q ss_pred ceEEEEEccCC----ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 218 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~----~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|+..++++. ..+.+. ......+..++.-+-++. |+++- .....|.++++
T Consensus 52 ~~I~~~~l~~~~~~~~~~~~~-~~~~~~p~glAvD~~~~~----lY~~d--------------~~~~~I~v~~~------ 106 (266)
T d1ijqa1 52 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTD--------------SVLGTVSVADT------ 106 (266)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEE--------------TTTTEEEEEET------
T ss_pred CEEEEEEecCCCCCcceEEEE-eCCCCCcceEEEeeccce----EEEEe--------------cCCCEEEeEec------
Confidence 46777776542 122221 223334567788777887 77753 12347899998
Q ss_pred hhhhhhhcCCCCCCccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004149 294 ASELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++...+. +..........++.|...+|+|..... ...|++.++++...+.+....
T Consensus 107 -----------~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~---------~~~I~r~~~dGs~~~~l~~~~---- 162 (266)
T d1ijqa1 107 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTEN---- 162 (266)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECSS----
T ss_pred -----------CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC---------CcceeEeccCCCceecccccc----
Confidence 5555444 333344567788899888888876432 246999998765432221100
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc-eeeEEeecCCEEEEEE
Q 004149 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVS 451 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~-~~~~~s~d~~~l~~~~ 451 (771)
-. .+..+++.+.+++||+... ....|.++++++...+.+....... .-..++.+++.|+++.
T Consensus 163 --------~~-------~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td 225 (266)
T d1ijqa1 163 --------IQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225 (266)
T ss_dssp --------CS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred --------cc-------eeeEEEeeccccEEEEecC--CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence 01 1234567777888988743 3457899999877666554433322 2336778889988876
Q ss_pred eCCCCCCeEEEEEeccc
Q 004149 452 SSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 452 s~~~~p~~l~~~~~~~~ 468 (771)
.. ...|++++..++
T Consensus 226 ~~---~~~I~~~~~~~g 239 (266)
T d1ijqa1 226 II---NEAIFSANRLTG 239 (266)
T ss_dssp TT---TTEEEEEETTTC
T ss_pred CC---CCeEEEEECCCC
Confidence 43 357888775444
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=0.011 Score=56.11 Aligned_cols=206 Identities=10% Similarity=0.089 Sum_probs=120.5
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
+....+-+..++|.+. +. ....++.+. +++..+.+....... ..++++..-+..|++...
T Consensus 38 ~~~ld~D~~~~~iyws-d~--~~~~I~~~~l~g~~~~~v~~~~~~~---------p~~iAvD~~~~~lY~~d~------- 98 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWT-DI--SEPSIGRASLHGGEPTTIIRQDLGS---------PEGIALDHLGRTIFWTDS------- 98 (263)
T ss_dssp EEEEEEETTTTEEEEE-ET--TTTEEEEEESSSCCCEEEECTTCCC---------EEEEEEETTTTEEEEEET-------
T ss_pred EEEEEEEeCCCEEEEE-EC--CCCeEEEEEcccCCcEEEEEecccc---------ccEEEEeccCCeEEEecc-------
Confidence 4456677778888554 32 234577777 454444444321111 136666666777776521
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....|.++++++...+.+. ...-..+..++..|.+.. |+
T Consensus 99 ------------------------------------~~~~I~~~~~dg~~~~~l~-~~~l~~p~~l~vdp~~g~----ly 137 (263)
T d1npea_ 99 ------------------------------------QLDRIEVAKMDGTQRRVLF-DTGLVNPRGIVTDPVRGN----LY 137 (263)
T ss_dssp ------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEETTTTE----EE
T ss_pred ------------------------------------CCCEEEEEecCCceEEEEe-cccccCCcEEEEecccCc----EE
Confidence 2368899999887766552 122235677888887775 66
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCC
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++.+.. ....|++.++ ++...+.+. .........++.+.+++|+|.....
T Consensus 138 ~t~~~~------------~~~~I~r~~~-----------------dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~ 188 (263)
T d1npea_ 138 WTDWNR------------DNPKIETSHM-----------------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (263)
T ss_dssp EEECCS------------SSCEEEEEET-----------------TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EeecCC------------CCcEEEEecC-----------------CCCCceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence 654211 1236999998 555544443 3334456788899999999987542
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|...++.+...+.+..+ ...| .. .+-++.+||++.. +...|+++
T Consensus 189 ----------~~I~~~~~~g~~~~~v~~~-------------~~~P-------~~--lav~~~~lYwtd~--~~~~I~~~ 234 (263)
T d1npea_ 189 ----------HRAECLNPAQPGRRKVLEG-------------LQYP-------FA--VTSYGKNLYYTDW--KTNSVIAM 234 (263)
T ss_dssp ----------TEEEEEETTEEEEEEEEEC-------------CCSE-------EE--EEEETTEEEEEET--TTTEEEEE
T ss_pred ----------CEEEEEECCCCCeEEEECC-------------CCCc-------EE--EEEECCEEEEEEC--CCCEEEEE
Confidence 4688888876443211100 0111 12 2335667877643 34569999
Q ss_pred ECCCCcEEEec
Q 004149 419 NVSSGELLRIT 429 (771)
Q Consensus 419 d~~tg~~~~l~ 429 (771)
|..+|+...+.
T Consensus 235 ~~~~g~~~~~~ 245 (263)
T d1npea_ 235 DLAISKEMDTF 245 (263)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCccceEE
Confidence 99888766554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.57 E-value=0.0051 Score=58.50 Aligned_cols=179 Identities=8% Similarity=-0.041 Sum_probs=110.9
Q ss_pred ceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|+..+++++..+.+ .... ..+..++...-++. |+++.. ....|..+++
T Consensus 58 ~~I~~~~l~g~~~~~v--~~~~~~~p~~iAvD~~~~~----lY~~d~--------------~~~~I~~~~~--------- 108 (263)
T d1npea_ 58 PSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM--------- 108 (263)
T ss_dssp TEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CeEEEEEcccCCcEEE--EEeccccccEEEEeccCCe----EEEecc--------------CCCEEEEEec---------
Confidence 6799999988877666 2222 34566677665666 776641 2347889998
Q ss_pred hhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++...+.|.. ........++.|...+|+|..... ....|++.++++.....+....
T Consensus 109 --------dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--------~~~~I~r~~~dG~~~~~i~~~~------- 165 (263)
T d1npea_ 109 --------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRILAQDN------- 165 (263)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEEECTT-------
T ss_pred --------CCceEEEEecccccCCcEEEEecccCcEEEeecCC--------CCcEEEEecCCCCCceeeeeec-------
Confidence 5555444433 334577888999999998877432 1346999988765542221100
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
-. .+..+++.+.+++||+.. .+...|.+++++++..+.+..... .-..++.++++||.+...
T Consensus 166 -----~~-------~P~glaiD~~~~~lYw~d--~~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~~~~lYwtd~~-- 227 (263)
T d1npea_ 166 -----LG-------LPNGLTFDAFSSQLCWVD--AGTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSYGKNLYYTDWK-- 227 (263)
T ss_dssp -----CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTEEEEEEEEECCC--SEEEEEEETTEEEEEETT--
T ss_pred -----cc-------ccceEEEeecCcEEEEEe--CCCCEEEEEECCCCCeEEEECCCC--CcEEEEEECCEEEEEECC--
Confidence 00 112455666777888864 344578889997776666654322 123566678888877743
Q ss_pred CCCeEEEEEecc
Q 004149 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
...|++++..+
T Consensus 228 -~~~I~~~~~~~ 238 (263)
T d1npea_ 228 -TNSVIAMDLAI 238 (263)
T ss_dssp -TTEEEEEETTT
T ss_pred -CCEEEEEECCC
Confidence 34577777543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.0021 Score=63.13 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=59.4
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|++||+...+..............-..++++++. ++..+ .+..|.++|+
T Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~s---------------~Dg~i~iwd~---------- 287 (342)
T d2ovrb2 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF----VITSS---------------DDGTVKLWDL---------- 287 (342)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSE----EEEEE---------------TTSEEEEEET----------
T ss_pred CEEEEEecccccccccccccceeeeceeecccCCCe----eEEEc---------------CCCEEEEEEC----------
Confidence 578999988776544411122222233455666665 66554 2347888898
Q ss_pred hhhcCCCCCCcc-eecC-----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 298 ELKESSSEDLPV-VNLT-----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 298 ~~~~~~~~~~~~-~~lt-----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
.+++. +.+. .+...+.+.+|||||..|+..+.+. .....|+++|++.
T Consensus 288 -------~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG-------t~~~~l~~~Df~~ 340 (342)
T d2ovrb2 288 -------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG-------TEETKLLVLDFDV 340 (342)
T ss_dssp -------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS-------SSCCEEEEEECCC
T ss_pred -------CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC-------CCeeEEEEEeCCC
Confidence 66554 3332 1233578899999998777766552 2235688888763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.0087 Score=56.94 Aligned_cols=226 Identities=10% Similarity=0.080 Sum_probs=125.9
Q ss_pred EEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCc--ceEEEecCCcccccc
Q 004149 73 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQ--LEKEFHVPQTVHGSV 149 (771)
Q Consensus 73 ~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~ 149 (771)
.|+.++++ +.+...+... ........|.+..++|.++-. ....++... ++.. ....+-...+..
T Consensus 11 ~I~~~~l~--~~~~~~~~~~-----~~~~~~id~d~~~~~lYw~D~---~~~~I~~~~l~~~~~~~~~~~~~~~~~~--- 77 (266)
T d1ijqa1 11 EVRKMTLD--RSEYTSLIPN-----LRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQ--- 77 (266)
T ss_dssp SEEEEETT--SCCCEEEECS-----CSSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSSCS---
T ss_pred eEEEEECC--CCcceeeeCC-----CCceEEEEEEeCCCEEEEEEC---CCCEEEEEEecCCCCCcceEEEEeCCCC---
Confidence 46665553 3344444322 244567788888888866532 233566555 2211 111111111111
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc
Q 004149 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 229 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~ 229 (771)
...++++.+-++.|++... ....|.++++++..
T Consensus 78 ----~p~glAvD~~~~~lY~~d~-------------------------------------------~~~~I~v~~~~g~~ 110 (266)
T d1ijqa1 78 ----APDGLAVDWIHSNIYWTDS-------------------------------------------VLGTVSVADTKGVK 110 (266)
T ss_dssp ----CCCEEEEETTTTEEEEEET-------------------------------------------TTTEEEEEETTSSS
T ss_pred ----CcceEEEeeccceEEEEec-------------------------------------------CCCEEEeEecCCce
Confidence 1146777777887776421 23579999998887
Q ss_pred eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc
Q 004149 230 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 309 (771)
Q Consensus 230 ~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 309 (771)
.+.+. ......+..++..|.... |+++.+ .....|++.++ ++...
T Consensus 111 ~~~~~-~~~~~~P~~l~vd~~~g~----ly~~~~-------------~~~~~I~r~~~-----------------dGs~~ 155 (266)
T d1ijqa1 111 RKTLF-RENGSKPRAIVVDPVHGF----MYWTDW-------------GTPAKIKKGGL-----------------NGVDI 155 (266)
T ss_dssp EEEEE-ECTTCCEEEEEEETTTTE----EEEEEC-------------SSSCEEEEEET-----------------TSCCE
T ss_pred EEEEE-cCCCCCcceEEEEcccCe----EEEecc-------------CCCcceeEecc-----------------CCCce
Confidence 66652 222335677888886664 665542 12347999998 55555
Q ss_pred eecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004149 310 VNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 310 ~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
+.+.. ........++.+.+++|+|..... ..|..+++.+.....+.... ..++
T Consensus 156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~----------~~I~~~~~dG~~~~~~~~~~------------~~~~---- 209 (266)
T d1ijqa1 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKL----------HSISSIDVNGGNRKTILEDE------------KRLA---- 209 (266)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTT----------TEEEEEETTSCSCEEEEECT------------TTTS----
T ss_pred ecccccccceeeEEEeeccccEEEEecCCc----------CEEEEEECCCCCEEEEEeCC------------Cccc----
Confidence 55543 334567789999999999987543 46999998765432211100 0000
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 389 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 389 ~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
.....+-++..||++.. ....|++++..+|+
T Consensus 210 ---~p~~lav~~~~ly~td~--~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 210 ---HPFSLAVFEDKVFWTDI--INEAIFSANRLTGS 240 (266)
T ss_dssp ---SEEEEEEETTEEEEEET--TTTEEEEEETTTCC
T ss_pred ---ccEEEEEECCEEEEEEC--CCCeEEEEECCCCc
Confidence 01123445567776542 33568888877664
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=97.42 E-value=0.0015 Score=68.45 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=74.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC--------------------cEEEEECCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--------------------YSLLIVNYRG 576 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G--------------------~~V~~~d~rG 576 (771)
.+..+.-|++...........|+||++-|||+++.. ...|.+.| ..++-+|.+-
T Consensus 47 ~~~~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcSS~------~g~f~E~GP~~v~~~~~l~~Np~SWn~~an~lfIDqPv 120 (483)
T d1ac5a_ 47 SDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSM------DGALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPT 120 (483)
T ss_dssp CCCEEEEEEEECSCSGGGSSCCEEEEECCTTTBCTH------HHHHHSSSSEEECTTSCEEECTTCGGGTSEEEEECCST
T ss_pred CcceEEEEEEEecCCCCCCCCCEEEEECCCCcHHHH------HHHHHccCCeEECCCCceeeCCCcccccCCEEEEeCCC
Confidence 345566677755432222346999999999987531 12222222 6788899775
Q ss_pred CCCCChhhhhc---CCCCccccc----hhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-----------
Q 004149 577 SLGFGEEALQS---LPGKVGSQD----VNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----------- 637 (771)
Q Consensus 577 ~~~~g~~~~~~---~~~~~~~~~----~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----------- 637 (771)
..|+..+.... ........+ ..++..+++ |+...+.....++.|.|-|+||..+-.+|..-
T Consensus 121 GvGfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~ 200 (483)
T d1ac5a_ 121 GTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDG 200 (483)
T ss_dssp TSTTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred CcCeeecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCC
Confidence 44554321100 000011111 333444443 33334444567899999999999888777531
Q ss_pred -CCceeEEEecCCccch
Q 004149 638 -PDKFVAAAARNPLCNL 653 (771)
Q Consensus 638 -p~~~~a~v~~~p~~~~ 653 (771)
.-.++++++.+|.++.
T Consensus 201 ~~inLkGi~IGNg~~d~ 217 (483)
T d1ac5a_ 201 DTYDLKALLIGNGWIDP 217 (483)
T ss_dssp SCCEEEEEEEEEECCCH
T ss_pred CcccceeeeecCCccCh
Confidence 1247888888887764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.35 E-value=0.015 Score=56.77 Aligned_cols=98 Identities=13% Similarity=0.274 Sum_probs=59.1
Q ss_pred ceEEEEEccCC-cee---eccCCCC--CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 218 PSLFVININSG-EVQ---AVKGIPK--SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 218 ~~l~v~d~~~~-~~~---~l~~~~~--~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
..|+.+|+... .+. .....+. ......+++.+||+ |+.+.+ ....|+++|.
T Consensus 198 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-----lyVa~~--------------~~g~I~~~dp---- 254 (314)
T d1pjxa_ 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP---- 254 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT----
T ss_pred cceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-----EEEEEc--------------CCCEEEEEeC----
Confidence 57888776533 221 1100111 22345678888886 655442 2347999997
Q ss_pred chhhhhhhhcCCCCCCcce-ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 292 SEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+++... .+........+.+|.||+++|+..... ...|+++++...+.
T Consensus 255 -------------~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~----------~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 255 -------------DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE----------NNAVWKFEWQRNGK 302 (314)
T ss_dssp -------------TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT----------TTEEEEEECSSCBC
T ss_pred -------------CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC----------CCcEEEEECCCCCh
Confidence 656543 343333456789999999998666544 25799999876554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.35 E-value=0.0022 Score=62.42 Aligned_cols=134 Identities=12% Similarity=0.066 Sum_probs=80.3
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|+.+|+++++.+... . ...+..+++.+||+ |++.+. ..|+++|.
T Consensus 39 ~~~I~r~d~~~g~~~~~~-~--~~~~~~i~~~~dg~-----l~va~~----------------~gl~~~d~--------- 85 (295)
T d2ghsa1 39 ERELHELHLASGRKTVHA-L--PFMGSALAKISDSK-----QLIASD----------------DGLFLRDT--------- 85 (295)
T ss_dssp GTEEEEEETTTTEEEEEE-C--SSCEEEEEEEETTE-----EEEEET----------------TEEEEEET---------
T ss_pred CCEEEEEECCCCeEEEEE-C--CCCcEEEEEecCCC-----EEEEEe----------------CccEEeec---------
Confidence 368999999999877652 2 23466788888886 555431 16889997
Q ss_pred hhhhcCCCCCCcceecCCCC-----ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 297 LELKESSSEDLPVVNLTESI-----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~-----~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++++.+.+.... .......+.|+|+ |+|.+...... .....+|.++ .++...+..+.
T Consensus 86 --------~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~----~~~g~l~~~~--~g~~~~~~~~~--- 147 (295)
T d2ghsa1 86 --------ATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE----TGAGSIYHVA--KGKVTKLFADI--- 147 (295)
T ss_dssp --------TTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCC----TTCEEEEEEE--TTEEEEEEEEE---
T ss_pred --------ccceeeEEeeeecCCCcccceeeEECCCCC-EEEEecccccc----ccceeEeeec--CCcEEEEeecc---
Confidence 777766664321 1356778899998 56665443111 1123455443 34322211110
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
. ....++|++|++.++++.+.. ..||++++
T Consensus 148 ----------~-------~~Ng~~~s~d~~~l~~~dt~~--~~I~~~~~ 177 (295)
T d2ghsa1 148 ----------S-------IPNSICFSPDGTTGYFVDTKV--NRLMRVPL 177 (295)
T ss_dssp ----------S-------SEEEEEECTTSCEEEEEETTT--CEEEEEEB
T ss_pred ----------C-------CcceeeecCCCceEEEeeccc--ceeeEeee
Confidence 0 123578999999998876544 44666654
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=0.0038 Score=64.14 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=76.9
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC--------------------cEEEEECCCCC
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--------------------YSLLIVNYRGS 577 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G--------------------~~V~~~d~rG~ 577 (771)
+..+..|++.... ...+.|+|+++-|||+++.. ...|.+.| ..++-+|.+-.
T Consensus 27 ~~~lfyw~~~s~~--~~~~~Pl~~WlnGGPG~SS~------~g~~~e~GP~~i~~~~~~~~N~~sW~~~anllfiD~PvG 98 (421)
T d1wpxa1 27 DKHFFFWTFESRN--DPAKDPVILWLNGGPGCSSL------TGLFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVN 98 (421)
T ss_dssp CCEEEEEEECCSS--CTTTSCEEEEECCTTTBCTH------HHHHHTTSSEEECTTSCEEECTTCGGGSSEEEEECCSTT
T ss_pred CceEEEEEEEeCC--CCCCCCEEEEECCCCcHHHH------HHHHHhcCCcEECCCCccccCCcccccccCEEEEecCCC
Confidence 3468877776542 33567999999999987531 12222222 67888896644
Q ss_pred CCCChhhhhcCCCCccccchhhHHHHHHHHHHc-CCC--CCCeEEEEEcChhHHHHHHHHHh---CC---CceeEEEecC
Q 004149 578 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARN 648 (771)
Q Consensus 578 ~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~ri~l~G~S~GG~~a~~~a~~---~p---~~~~a~v~~~ 648 (771)
.|+...... .........+|+.++++...+. +.. ...++.|.|-|+||..+-.+|.+ .. -.++++++.+
T Consensus 99 tGfSy~~~~--~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGn 176 (421)
T d1wpxa1 99 VGFSYSGSS--GVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGN 176 (421)
T ss_dssp STTCBCSSC--CCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEES
T ss_pred CCceecCCc--cccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecC
Confidence 445432111 1111112245666666544443 222 24579999999999998887743 12 2478999999
Q ss_pred Cccch
Q 004149 649 PLCNL 653 (771)
Q Consensus 649 p~~~~ 653 (771)
|+.+.
T Consensus 177 g~~dp 181 (421)
T d1wpxa1 177 GLTDP 181 (421)
T ss_dssp CCCCH
T ss_pred Ccccc
Confidence 98875
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.22 E-value=0.018 Score=54.48 Aligned_cols=137 Identities=4% Similarity=-0.052 Sum_probs=70.5
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCcc
Q 004149 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISS 318 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~ 318 (771)
..+..+++.++|+ |++... ....++.++. .+....... .....
T Consensus 98 ~~p~~iavd~~g~-----i~v~d~--------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 141 (260)
T d1rwia_ 98 NYPEGLAVDTQGA-----VYVADR--------------GNNRVVKLAA-----------------GSKTQTVLPFTGLND 141 (260)
T ss_dssp CSEEEEEECTTCC-----EEEEEG--------------GGTEEEEECT-----------------TCSSCEECCCCSCCS
T ss_pred eecccccccccce-----eEeecc--------------cccccccccc-----------------ccceeeeeeecccCC
Confidence 3456788999886 655431 2225777775 333322222 22233
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
....+++|+|+ |++.... ...|++++.++.....+.. ..+. .+..+++.+
T Consensus 142 p~~i~~~~~g~-~~v~~~~----------~~~i~~~d~~~~~~~~~~~--------------~~~~-----~p~gi~~d~ 191 (260)
T d1rwia_ 142 PDGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPF--------------TDIT-----APWGIAVDE 191 (260)
T ss_dssp CCEEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCC--------------SSCC-----SEEEEEECT
T ss_pred cceeeecCCCC-Eeeeccc----------cccccccccccceeeeeec--------------cccC-----CCccceeee
Confidence 56678899998 5444432 3468888876543221110 0010 123456777
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCC
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGD 445 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~ 445 (771)
+|+ |+++. .....|++++.+++..+.+..... ......++++|+
T Consensus 192 ~g~-l~vsd--~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~ 236 (260)
T d1rwia_ 192 AGT-VYVTE--HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT 236 (260)
T ss_dssp TCC-EEEEE--TTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC
T ss_pred eee-eeeee--cCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC
Confidence 886 55543 234467778776555444433221 223344555554
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.04 E-value=0.018 Score=50.36 Aligned_cols=176 Identities=17% Similarity=0.190 Sum_probs=105.4
Q ss_pred chhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC
Q 004149 63 PNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP 142 (771)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (771)
+|.++++..-.++...+...+ +..++. ++ ..+.-.+..-|++.++|+...+ +...+|.+ ++|..+++++++
T Consensus 73 RDV~kGkE~Hai~~~Nlk~~G-EE~~i~-sp-----k~vRI~S~~yddk~vvF~Gase-d~~~LYvi-egGklrkL~~vP 143 (313)
T d2hu7a1 73 RDVSKGAEQHALFKVNTSRPG-EEQRLE-AV-----KPMRILSGVDTGEAVVFTGATE-DRVALYAL-DGGGLRELARLP 143 (313)
T ss_dssp EECSTTSCCEEEEEEETTSTT-CEEECT-TS-----CSBEEEEEEECSSCEEEEEECS-SCEEEEEE-ETTEEEEEEEES
T ss_pred eehhcCcceeeEEEEccCCCC-eeeEec-CC-----ceEEEEEeeecCceEEEecccC-CceEEEEE-eCCceeeeccCC
Confidence 355556555566665553223 222332 11 1134445556899999997655 44556655 467788888874
Q ss_pred CcccccccCCCcccceeecC--CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceE
Q 004149 143 QTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSL 220 (771)
Q Consensus 143 ~~~~g~~~~~~~~~~~~wSp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l 220 (771)
.++|=- .|++|+=..--+ .....+
T Consensus 144 --------------pFsFVtDI~~d~I~G~g~~~----------------------------------------g~~~sf 169 (313)
T d2hu7a1 144 --------------GFGFVSDIRGDLIAGLGFFG----------------------------------------GGRVSL 169 (313)
T ss_dssp --------------SCEEEEEEETTEEEEEEEEE----------------------------------------TTEEEE
T ss_pred --------------CcceEEeccCCeEEEEeeec----------------------------------------CCcceE
Confidence 222322 266665543221 123569
Q ss_pred EEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhh
Q 004149 221 FVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 221 ~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
|+.|+.+|..+.+ ++.+.+..++..+|+.| + ++.- ..-+.+.+..+|+
T Consensus 170 F~adl~SG~lri~--tpkeGS~~~ay~~~gnK-----V--~sdy----------Et~gEsywit~D~------------- 217 (313)
T d2hu7a1 170 FTSNLSSGGLRVF--DSGEGSFSSASISPGMK-----V--TAGL----------ETAREARLVTVDP------------- 217 (313)
T ss_dssp EEEETTTEEEEEE--CCSSEEEEEEEECTTSC-----E--EEEE----------EESSCEEEEEECT-------------
T ss_pred EEEecccCCEEEe--cCCCCcccceeEccCce-----e--eecc----------CCCCceEEEEEec-------------
Confidence 9999999999999 89999999999999887 6 3311 1123334447787
Q ss_pred cCCCCCCcceecCCCCcc--------ccceeecCCCCEEEEEecC
Q 004149 301 ESSSEDLPVVNLTESISS--------AFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 301 ~~~~~~~~~~~lt~~~~~--------~~~p~~SpDG~~l~f~~~~ 337 (771)
.+++..++.-.... +...-+.||++-++....+
T Consensus 218 ----~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrd 258 (313)
T d2hu7a1 218 ----RDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE 258 (313)
T ss_dssp ----TTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred ----ccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecC
Confidence 77777776544332 2223378999854444433
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.092 Score=49.12 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=34.2
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 396 ~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
+++++..| ++...++...+ +|+.+++.......... ....++.++..|+..... ..+.+.++..
T Consensus 184 ~~~~~~~l-~~~~~dg~i~i--~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~d----g~i~iwd~~~ 247 (293)
T d1p22a2 184 LQYRDRLV-VSGSSDNTIRL--WDIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAYD----GKIKVWDLVA 247 (293)
T ss_dssp EEEETTEE-EEEETTSCEEE--EETTTCCEEEEECCCSS-CEEEEECCSSEEEEEETT----SCEEEEEHHH
T ss_pred ccCCCCeE-EEecCCCEEEE--Eecccceeeeeecccce-eeeeccccceEEEEEcCC----CEEEEEECCC
Confidence 34456554 44444555444 57877776665544332 234566777766554432 2366666543
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.74 E-value=0.0015 Score=65.27 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.7
Q ss_pred CeEEEEEcChhHHHHHHHHHh
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~ 636 (771)
++|-|+||||||..+-+++..
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~ 125 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSL 125 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHH
T ss_pred CceeEeecccccHHHHHHHHH
Confidence 589999999999999888764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.73 E-value=0.038 Score=52.01 Aligned_cols=94 Identities=11% Similarity=-0.053 Sum_probs=53.0
Q ss_pred ccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 215 KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 215 ~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.....+.+||+.+++..... ......+. ..++++.. |+... ....|.++|+
T Consensus 155 s~d~~i~~~d~~~~~~~~~~-~~~~~~v~--~~~~~~~~----l~~~~---------------~dg~i~i~d~------- 205 (293)
T d1p22a2 155 SGDRTIKVWNTSTCEFVRTL-NGHKRGIA--CLQYRDRL----VVSGS---------------SDNTIRLWDI------- 205 (293)
T ss_dssp ETTSEEEEEETTTCCEEEEE-ECCSSCEE--EEEEETTE----EEEEE---------------TTSCEEEEET-------
T ss_pred cCCCceeeecCCCCcEEEEE-cccccccc--cccCCCCe----EEEec---------------CCCEEEEEec-------
Confidence 34578999999888754431 11222233 34455665 65544 2336778887
Q ss_pred hhhhhhcCCCCCCccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 295 SELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+..... .......+ -.++++++.|+..+.+ ..|.+||+.++.
T Consensus 206 ----------~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~d-----------g~i~iwd~~~~~ 249 (293)
T d1p22a2 206 ----------ECGACLRVLEGHEELV--RCIRFDNKRIVSGAYD-----------GKIKVWDLVAAL 249 (293)
T ss_dssp ----------TTCCEEEEECCCSSCE--EEEECCSSEEEEEETT-----------SCEEEEEHHHHT
T ss_pred ----------ccceeeeeecccceee--eeccccceEEEEEcCC-----------CEEEEEECCCCc
Confidence 4444332 22222222 3578889988766654 348888876543
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0069 Score=62.88 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC---------------------CcEEEEECCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---------------------GYSLLIVNYR 575 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~---------------------G~~V~~~d~r 575 (771)
.+..+..|++.... .....|+++++-|||+++.. + ..|.+. -..+|-+|.+
T Consensus 30 ~~~~lffw~~~s~~--~~~~~Pl~~wlnGGPG~SS~--~----g~~~e~GP~~v~~~~~~~~~N~~SW~~~anllfIDqP 101 (452)
T d1ivya_ 30 GSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL--D----GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESP 101 (452)
T ss_dssp TTEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTH--H----HHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCS
T ss_pred CCceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--H----HHHHccCCcEEcCCCCeeccCCcchhcccCEEEEecC
Confidence 35568888886543 23467999999999987531 1 111111 2678888976
Q ss_pred CCCCCChhhhhcCCCCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHh----CCCceeEEEecCCc
Q 004149 576 GSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPL 650 (771)
Q Consensus 576 G~~~~g~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~p~~~~a~v~~~p~ 650 (771)
-..|+....... ..........|+.+++. ++...+.....++.|+|-|+||..+-.+|.. ..-.++++++.+|+
T Consensus 102 vGtGfS~~~~~~-~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~ 180 (452)
T d1ivya_ 102 AGVGFSYSDDKF-YATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 180 (452)
T ss_dssp TTSTTCEESSCC-CCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred CCcccccCCCCC-CCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCc
Confidence 444454332111 11111122455555554 4444444556789999999999998888753 22358999999998
Q ss_pred cch
Q 004149 651 CNL 653 (771)
Q Consensus 651 ~~~ 653 (771)
++.
T Consensus 181 ~d~ 183 (452)
T d1ivya_ 181 SSY 183 (452)
T ss_dssp SBH
T ss_pred cCc
Confidence 874
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.60 E-value=0.92 Score=42.37 Aligned_cols=162 Identities=7% Similarity=0.010 Sum_probs=79.1
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.+++..+.....+. ...-..+...+..++|+ +++... ....++.++.
T Consensus 93 ~~i~~~~~~g~~~~~~~-~~~~~~p~~~avd~~G~-----i~v~~~--------------~~~~~~~~~~---------- 142 (279)
T d1q7fa_ 93 HQIQIYNQYGQFVRKFG-ATILQHPRGVTVDNKGR-----IIVVEC--------------KVMRVIIFDQ---------- 142 (279)
T ss_dssp CEEEEECTTSCEEEEEC-TTTCSCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred cccccccccccceeecC-CCcccccceeccccCCc-----EEEEee--------------ccceeeEecc----------
Confidence 46677776555444441 22222445667777776 444431 2235777764
Q ss_pred hhhcCCCCCCcceec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 298 ELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.....+ ...........+.++|+ |++.... ...|+++|..+.-...+
T Consensus 143 -------~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~----------~~~V~~~d~~G~~~~~~----------- 193 (279)
T d1q7fa_ 143 -------NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR----------AHCVKVFNYEGQYLRQI----------- 193 (279)
T ss_dssp -------TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG----------GTEEEEEETTCCEEEEE-----------
T ss_pred -------CCceeecccccccccccceeeecccee-EEeeecc----------ccceeeeecCCceeeee-----------
Confidence 33322322 12223355667888886 5444433 34688888654221111
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCC--CCceeeEEeecCCEEEE
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAE--SNFSWSLLTLDGDNIIA 449 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~--~~~~~~~~s~d~~~l~~ 449 (771)
. ..+.+. .+..++..++|+ |+++.. .+...|..++. +|+.. .+.... .......+++||. |+.
T Consensus 194 g--~~g~~~-----~P~giavD~~G~-i~Vad~-~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V 259 (279)
T d1q7fa_ 194 G--GEGITN-----YPIGVGINSNGE-ILIADN-HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVL 259 (279)
T ss_dssp S--CTTTSC-----SEEEEEECTTCC-EEEEEC-SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEE
T ss_pred c--cccccc-----CCcccccccCCe-EEEEEC-CCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc-EEE
Confidence 0 011111 123567888997 655432 33345666675 56643 332221 1233345667764 443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.26 E-value=0.043 Score=54.31 Aligned_cols=113 Identities=10% Similarity=0.058 Sum_probs=61.9
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC--cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 108 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 108 PdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
+|||+| |+.+. .+..+-+|+ +.-+..+++..+. ..| +++.+++++..+..+... ...|.
T Consensus 97 yDGryl-FVNDk--an~RVAvIdl~~fkt~kIi~iPn~~~~H----------G~r~~~~p~T~YV~~~~e-~~vP~---- 158 (459)
T d1fwxa2 97 YDGRFL-FMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIH----------GLRPQKWPRSNYVFCNGE-DETPL---- 158 (459)
T ss_dssp EEEEEE-EEEET--TTTEEEEEETTTTEEEEEEECSSCCSEE----------EEEECCSSBCSEEEEEEC-SCEES----
T ss_pred cceeEE-EEEcC--CCceEEEEECcceeeeEEEecCCCCCCc----------eeecccCCCeEEEEccCc-ccccc----
Confidence 489988 55443 456788888 6667777777643 444 566666665543332211 10000
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
...+....+ ..+....+.++|.++.++..- ..-........++|||++ +++++.
T Consensus 159 -pndg~~l~d------------------~~~y~~~~t~ID~~tm~V~~Q--V~V~g~ld~~~~s~dGK~----af~Tsy 212 (459)
T d1fwxa2 159 -VNDGTNMED------------------VANYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDADYEGKW----AFSTSY 212 (459)
T ss_dssp -SCSSSSTTC------------------GG-EEEEEEEEETTTTEEEEE--EEESSCCCCEEECSSSSE----EEEEES
T ss_pred -CCCCccccc------------------hhhcceEEEEEecCCceEEEE--eeeCCChhccccCCCCCE----EEEEec
Confidence 000000000 011235667889988876443 222234567899999997 666653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.25 E-value=0.38 Score=44.63 Aligned_cols=110 Identities=5% Similarity=-0.041 Sum_probs=56.3
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.....++.++|+ |++.... ..++++++..+......... .+. ....+++.
T Consensus 99 ~p~~iavd~~g~-i~v~d~~----------~~~~~~~~~~~~~~~~~~~~--------------~~~-----~p~~i~~~ 148 (260)
T d1rwia_ 99 YPEGLAVDTQGA-VYVADRG----------NNRVVKLAAGSKTQTVLPFT--------------GLN-----DPDGVAVD 148 (260)
T ss_dssp SEEEEEECTTCC-EEEEEGG----------GTEEEEECTTCSSCEECCCC--------------SCC-----SCCEEEEC
T ss_pred ecccccccccce-eEeeccc----------cccccccccccceeeeeeec--------------ccC-----Ccceeeec
Confidence 456788999997 4444332 24566666544332111000 010 12355677
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
++|+ ++++.. ....|++++.++.....+..... ......++++|+ |+++.. ...+++.++
T Consensus 149 ~~g~-~~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~---~~~~i~~~~ 209 (260)
T d1rwia_ 149 NSGN-VYVTDT--DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEH---NTNQVVKLL 209 (260)
T ss_dssp TTCC-EEEEEG--GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEET---TTTEEEEEC
T ss_pred CCCC-Eeeecc--ccccccccccccceeeeeeccccCCCccceeeeeee-eeeeec---CCCEEEEEe
Confidence 8887 555433 33468888987665555443322 223345566654 444443 234466554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.50 E-value=1.5 Score=43.10 Aligned_cols=20 Identities=5% Similarity=-0.082 Sum_probs=15.5
Q ss_pred cceEEEeCCCCCeEEEEecC
Q 004149 100 GASAVVPSPSGSKLLVVRNP 119 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~ 119 (771)
......+||||+++++.+.+
T Consensus 194 ~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 194 NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp CCCCEEECSSSSEEEEEESC
T ss_pred ChhccccCCCCCEEEEEecc
Confidence 34578999999998877644
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.80 E-value=2.6 Score=39.04 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=16.3
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 392 LSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 392 ~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
..++..+||. |+++ +......+|++.
T Consensus 247 ~~vav~~dG~-l~V~-~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 247 FDVALMDDGS-VVLA-SKDYRLYIYRYV 272 (279)
T ss_dssp EEEEEETTTE-EEEE-ETTTEEEEEECS
T ss_pred eEEEEeCCCc-EEEE-eCCCeEEEEEee
Confidence 3556788985 6554 445666777653
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=90.25 E-value=0.22 Score=46.45 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh----CC----CceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----AP----DKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~p----~~~~a~v~~~p~~ 651 (771)
.+++...++.+.+.. ...+|.+.|||+||.+|..++.. .| ..+......+|-+
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~l~~~~~~~~~~~i~~~tFG~Prv 176 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRV 176 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHHHHHHCTTCSTTTEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHHHHHHhCcccCCCcceEEEecCccc
Confidence 445666666665543 24689999999999999988753 22 2455666666644
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=89.47 E-value=0.35 Score=44.87 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh---CCCceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~p~~ 651 (771)
.+++...++.+.++. ...+|.+.|||+||.+|..++.. ....+......+|-+
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Prv 163 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRS 163 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCccc
Confidence 345666666666653 24589999999999999987753 223456666666644
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=89.00 E-value=0.39 Score=44.66 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh----C----CCceeEEEecCCc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A----PDKFVAAAARNPL 650 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~----p~~~~a~v~~~p~ 650 (771)
..++...+..+.++. ...+|.+.|||+||.+|..++.. . ...+......+|-
T Consensus 115 ~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~l~~~~~~~~~~~i~~~TFG~Pr 174 (265)
T d3tgla_ 115 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCALDLYQREEGLSSSNLFLYTQGQPR 174 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHHHTCSSCCTTTEEEEEESCCC
T ss_pred HHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHHHHHHhccccCccccceeecCCCc
Confidence 345555565555543 34689999999999999987753 1 1234555555564
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=88.36 E-value=0.21 Score=46.80 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 345666666665543 24689999999999999988764
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=87.97 E-value=0.26 Score=46.00 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC---CCceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~ 651 (771)
.+++...++.+.++. ..-+|.+.|||+||.+|..++... ...+......+|-+
T Consensus 121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~l~~~~~~i~~~tFG~Prv 176 (269)
T d1tiba_ 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRV 176 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHHHHHhccCcceEEEecCCCc
Confidence 345666666666553 245899999999999999888632 22345555555533
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=86.17 E-value=2.2 Score=37.19 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC----CceeEEEecC
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARN 648 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~ 648 (771)
+.++...+....++ ....|++|+|+|.|+.++..++..-+ ++++++++..
T Consensus 79 ~~~~~~~i~~~a~~--CP~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfG 132 (197)
T d1cexa_ 79 IREMLGLFQQANTK--CPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFG 132 (197)
T ss_dssp HHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHHHhh--CCCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEe
Confidence 45666666666655 34579999999999999988876542 4677776654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=81.41 E-value=20 Score=33.80 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=28.9
Q ss_pred EEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 221 FVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 221 ~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
+++..++++.+.+ ...-.....+++|||++. |++... ...+|+++++
T Consensus 189 ~v~~~~~~~~~~~--~~~l~~pNGI~~s~d~~~----lyVa~t--------------~~~~i~~y~~ 235 (340)
T d1v04a_ 189 FVTYYSPNDVRVV--AEGFDFANGINISPDGKY----VYIAEL--------------LAHKIHVYEK 235 (340)
T ss_dssp EEEEECSSCEEEE--EEEESSEEEEEECTTSSE----EEEEEG--------------GGTEEEEEEE
T ss_pred eEEEEcCCceEEE--cCCCCccceeEECCCCCE----EEEEeC--------------CCCeEEEEEe
Confidence 3344445566555 333345778999999996 555442 2336888877
|