Citrus Sinensis ID: 004160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-
Protein Sequence
MAFSARFSSNHLHLNPNPKVHWKHKLPGRYVTSGKRRVRSLGLVRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAGIVDGQIS
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEcccccEEEccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mafsarfssnhlhlnpnpkvhwkhklpgryvtsgkrRVRSLGLVravlpdgkkssvngyglgePARILLERLFAQTQKLEERmsrdsgvgkdvqfGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELgrkntefgetenllrvKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNEldgtklkvsEAETVVEQIVDLTHKLVIsnkndesstsmptddMGLELMQQGLdkgndnfrLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKASlsietdtdntifpesrfdprisvienneclteVGSEVARLSVLTEQLVKEagivdgqis
Flexible Loop (DISEMBL)
mafsarfssnhlhlnpnpkvhwkhklpgryvtsgkrrvrslglvravlpdgkkssvngyglGEPARILLERLFAQTQKLEermsrdsgvgkDVQFGLNLEILESDLQAVLAALKKKEEDLEDAErrvclehselnrakeellrrEREIDVACSRHEKLeeelgqsnlklvsqARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASvalrkveeekLKVVEAnlekrtmewllSQDALKKLAEEASRrmeetndtledfRRVKKLLSDVRSELVSsqkslassrKQMEEQEHLLGKQLVELEEQKKSLTSYMTSlkdaqveveservklrvtearnkelerdlsmEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGrkntefgetenllrvKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHklvisnkndesstsmpTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAkraltvkdeelktvlgrldakekelkkleetvedanDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVlteqlvkeagivdgqis
Low Complexity Region (SEG)
MAFSARFSSNHLHLNPNPKVHWKHKLPGRYVTSGKRRVRSLGLVRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESdlqavlaalkkkeedledaeRRVCLEHSelnrakeellrrereIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQsalslkelelekmrsellkkseeAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASvalrkveeeklkvveanlekRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAkekelkkleeTVEDANDLRKLYALAQERFGEKSVGDlaierlqleaaqleveaaTSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAGIVDGQIS
Disordered region (IsUnstruct)
*******************VHWKHKLPGRYVTSGKRRVRSLGLVRAVLPDGKKSSVNGYGLGEPARILLERLFAQ**************GKDVQFGLNLEILESDLQAVLAAL******************************************************************************************************************************************************************VV***L**RTMEWLL****************************************************************************************************************************************************************************************LI************************************************HVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVI*************************************QLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLG********************DLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVE******************************TIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAGI******
Disordered Region (DISOPRED)
***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
********SNHLHLNPNPKVHWKHKLPGRYVTSGKRRVRSLGLVRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAE***********TLEDFRRVKKLLSDV********************QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNK********PTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAGIVDGQIS
Disordered Region (DISPRO)
************HLNPNPKVHWKHKLPGRYVTSGKRRVRSLGLVRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAG*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
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
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	771
225430316	774	PREDICTED: uncharacterized protein LOC10	0.987	0.983	0.648	0.0
255548884	776	Ubiquitin-protein ligase BRE1A, putative	0.994	0.988	0.634	0.0
224092500	716	predicted protein [Populus trichocarpa]	0.922	0.993	0.687	0.0
356562046	764	PREDICTED: uncharacterized protein LOC10	0.977	0.986	0.570	0.0
449525716	769	PREDICTED: uncharacterized LOC101208859	0.949	0.951	0.586	0.0
449437152	777	PREDICTED: uncharacterized protein LOC10	0.949	0.942	0.586	0.0
357437005	755	hypothetical protein MTR_1g012620 [Medic	0.950	0.970	0.528	0.0
18417960	783	Myosin heavy chain-related protein [Arab	0.980	0.965	0.531	0.0
13430502	783	unknown protein [Arabidopsis thaliana]	0.980	0.965	0.531	0.0
2864624	764	putative protein [Arabidopsis thaliana]	0.946	0.955	0.552	0.0

>gi|225430316|ref|XP_002282750.1| PREDICTED: uncharacterized protein LOC100262916 [Vitis vinifera] gi|296082052|emb|CBI21057.3| unnamed protein product [Vitis vinifera]

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/779 (64%), Positives = 628/779 (80%), Gaps = 18/779 (2%)

Query: 1   MAFSARFSSNHLHLNPNPKVHW----------KHKLPGRYVTSGKRRVRSLGLVRAVLPD 50
           MAF+A F     H+ P    H+          K K     +T+ KR+  S  +V++VL +
Sbjct: 1   MAFAAVF-----HVPPTSSHHYSQLCSLGLNRKQKRLA-VMTTSKRKGHSRRIVKSVL-N 53

Query: 51  GKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVL 110
            +KSS+N  G  EPAR+LLERLFAQTQKLEE MSRD G+  D+Q GLNLE LESDLQA L
Sbjct: 54  NRKSSINDNGSTEPARVLLERLFAQTQKLEEHMSRDPGLPLDIQLGLNLETLESDLQAAL 113

Query: 111 AALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLV 170
            ALKKKEEDL+DA   V +EH+ELNRAKEEL R   EI VACS+HEKLEEEL Q+NL L 
Sbjct: 114 VALKKKEEDLQDAAGMVLMEHTELNRAKEELKRHAEEIAVACSKHEKLEEELKQANLNLA 173

Query: 171 SQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQ 230
           S+AR IEDLKL+LK+RDQEI A +SALS K+ E++KMR+EL+KK+EEAAK +SEL+S A+
Sbjct: 174 SRARQIEDLKLQLKDRDQEIFAARSALSSKQDEMDKMRNELMKKTEEAAKKESELQSMAK 233

Query: 231 MLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLL 290
           +L+EANEVVKKQE E+Q L+K IQEKEEELE S+ LRK+EE+KLKV EANLEK+TM+WLL
Sbjct: 234 LLDEANEVVKKQEIELQELQKSIQEKEEELEESMMLRKLEEKKLKVAEANLEKKTMDWLL 293

Query: 291 SQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHL 350
           +++ LKKLAE+A++ M E+N T+++FRR K+LL DVRSELVSSQKSLASSR++M+EQE L
Sbjct: 294 AKEELKKLAEDAAKHMGESNKTMKEFRRAKRLLHDVRSELVSSQKSLASSRQKMQEQEKL 353

Query: 351 LGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEEL 410
           L KQL ELEEQK S+  YMTSLKDAQ+EVESERVKLRV E+RNKELE DLS++KEL+EEL
Sbjct: 354 LEKQLAELEEQKTSINHYMTSLKDAQIEVESERVKLRVAESRNKELEWDLSVKKELMEEL 413

Query: 411 QNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQ 470
           Q EL KEK SLQQ I E S LQ+EL +K TEFGE  NLL+VKES+LVEA+LEIQ+LKS+Q
Sbjct: 414 QEELRKEKSSLQQVIQETSFLQKELDQKTTEFGELHNLLQVKESELVEARLEIQHLKSEQ 473

Query: 471 ASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ 530
            SLQLIL+E+D EL NA++ LEE+N EV ELKM+M++RE+QL+QA   L+EK+EH+LI+Q
Sbjct: 474 VSLQLILKERDLELFNAQKKLEEVNQEVSELKMLMNNREDQLMQATTLLKEKEEHLLIMQ 533

Query: 531 NELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDN 590
           +EL+ TKLK SEAE+VVE+IVDLT+KLVI  K++E + + P DDMG  L+ Q  +K  D+
Sbjct: 534 HELNDTKLKFSEAESVVERIVDLTNKLVICTKDEECTATSPFDDMGQNLLHQLFEKPTDD 593

Query: 591 FRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL-EE 649
           F+ Q K+LE EL+  RE+LR KE+EVLAA+RALT+KDEELK  L RLDA+EKEL+++ EE
Sbjct: 594 FKRQEKRLETELELTRESLRTKELEVLAAQRALTIKDEELKIALERLDAREKELRRMKEE 653

Query: 650 TVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLN 709
           T+EDAN L+ LYALAQER GEKSVGDLAIE+LQLEAAQLEVEAATSAL KL EMS ELL+
Sbjct: 654 TMEDANHLKNLYALAQERIGEKSVGDLAIEKLQLEAAQLEVEAATSALHKLAEMSCELLH 713

Query: 710 KASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAGIVDG 768
             SLS++++TD  IF  + FDP +S+ ENNE  T+V +EVARLS +T+QLV+EAG+V  
Sbjct: 714 NVSLSVDSETDTAIFLPNGFDPWLSMHENNEHFTKVKTEVARLSAITDQLVQEAGVVGA 772

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548884|ref|XP_002515498.1| Ubiquitin-protein ligase BRE1A, putative [Ricinus communis] gi|223545442|gb|EEF46947.1| Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/775 (63%), Positives = 623/775 (80%), Gaps = 8/775 (1%)

Query: 1   MAFSARF-SSNHLHLNPNPKVHWKHKLPGRYVTSGKRRVRS-LGLVRAVLPDGKKSSVNG 58
           M FS    SS  L+   +P+++ +        T  KRR  S L +V++VL +   SS++ 
Sbjct: 1   MGFSVSVRSSLPLYKLFSPRLNSRQNRVDCITTISKRRKSSPLQIVKSVL-NSSNSSIDD 59

Query: 59  YGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEE 118
            G  EPARILLERLFAQTQKLE++M   S +  DV  G NLEILESDL AVL AL+KKEE
Sbjct: 60  NGATEPARILLERLFAQTQKLEKQMGPHSHLPADVYPGFNLEILESDLLAVLEALRKKEE 119

Query: 119 DLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIED 178
           DL+DAER+V  EHS+LN AKE L  RE EI +A S+HEKLE EL  +N+ L SQ+R IED
Sbjct: 120 DLQDAERQVLSEHSDLNHAKEMLELRENEIAIAYSKHEKLEGELKLANVYLASQSRQIED 179

Query: 179 LKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEV 238
           L+L++KER+  I A +SALSLKE E+EKM+S+L+KKSEEA K+D+ELK K+Q+L EANEV
Sbjct: 180 LRLQVKEREDVIFAAKSALSLKEDEIEKMKSKLIKKSEEAEKMDTELKCKSQLLEEANEV 239

Query: 239 VKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKL 298
           VKKQE E+Q L+  I++K+E+LE S  LRK+EEEKLKV EANLEK+TMEWL++Q+ LKKL
Sbjct: 240 VKKQEIELQQLKNAIRDKQEKLEVSKTLRKLEEEKLKVAEANLEKQTMEWLIAQEELKKL 299

Query: 299 AEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVEL 358
           A+ AS+++ ET +T+E+FRRVKKLL DVRSELVSSQKSLASSRK+MEEQE LL +QL  L
Sbjct: 300 ADNASKQIVETKETMENFRRVKKLLIDVRSELVSSQKSLASSRKRMEEQEKLLKQQLAHL 359

Query: 359 EEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEK 418
           EE++KS+ SYMTSLKDAQ+EVESER KLR++EARNKELERDLS+EKEL+EEL  EL KEK
Sbjct: 360 EEERKSVLSYMTSLKDAQIEVESERAKLRISEARNKELERDLSIEKELIEELHEELKKEK 419

Query: 419 YSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILE 478
            SL+QA++E+SSL+EEL +KNTEFGE   L++ KES+LVEAKLEIQ+LKS+QASLQL+LE
Sbjct: 420 SSLKQAMEEMSSLREELEQKNTEFGEIHGLIQDKESELVEAKLEIQHLKSEQASLQLVLE 479

Query: 479 EKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKL 538
            KD +L +A++ LEE++ E+ ELKM++SS+E+QL+QA + L+EK+EHV ++Q+EL+ TK+
Sbjct: 480 GKDRQLLSAKKKLEEVDQEIAELKMLLSSKEDQLIQATNMLKEKEEHVQVMQDELNETKM 539

Query: 539 KVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQL 598
           K+SEAETVVE+IV+LT+KLVIS K+++ +   P+D   L+L+QQ LD+  D FRLQ +QL
Sbjct: 540 KISEAETVVERIVELTNKLVISIKDEDHNAFAPSDSTSLDLVQQPLDRPGDYFRLQKEQL 599

Query: 599 EIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL-EETVEDANDL 657
           E EL   RE LRMKEMEVLA+++ALT+KDEELK VLG+LDA+EKELK L +E +EDANDL
Sbjct: 600 ENELSLTRERLRMKEMEVLASQKALTIKDEELKAVLGKLDAREKELKGLKDEMIEDANDL 659

Query: 658 RKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKASLSIET 717
           +KLY LAQER GEKS+G+LAIE+LQLEAAQLEVEAATSAL KL EMS ELLNKA+LSI  
Sbjct: 660 KKLYTLAQERIGEKSIGELAIEKLQLEAAQLEVEAATSALLKLVEMSRELLNKANLSIMA 719

Query: 718 D----TDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAGIVDG 768
           D    TD ++F ++  DP IS+  NNECL EV + V RLS +TEQLVKEAG+  G
Sbjct: 720 DADAETDISMFLQNYSDPGISMFGNNECLKEVKTGVVRLSAMTEQLVKEAGVAAG 774

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092500|ref|XP_002309636.1| predicted protein [Populus trichocarpa] gi|222855612|gb|EEE93159.1| predicted protein [Populus trichocarpa]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/716 (68%), Positives = 597/716 (83%), Gaps = 5/716 (0%)

Query: 54  SSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAAL 113
           SS+N  G  EPAR+LLERLFAQT KLEE+MSR S + +DVQ  +NLEILESDL A+L AL
Sbjct: 3   SSINENGATEPARVLLERLFAQTLKLEEQMSRSSRLPEDVQPVVNLEILESDLLALLKAL 62

Query: 114 KKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQA 173
           KKKEE+L+DAER V LEHS LN+AKEEL +RE  I  A S+HEKLE EL Q+NL L SQA
Sbjct: 63  KKKEEELQDAERNVFLEHSRLNQAKEELKKRENVITAAFSKHEKLEGELKQANLNLASQA 122

Query: 174 RHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLN 233
           R IE+LKL+LKE++Q+IA+  SALSLKE E++KM+++LLKKSEE A+IDSELK KAQ+LN
Sbjct: 123 REIEELKLQLKEKEQDIASACSALSLKEDEMDKMKTDLLKKSEEVARIDSELKYKAQLLN 182

Query: 234 EANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQD 293
           +A+EVVK+QE E+Q L+ +I+EKEEELE S  LRK EEEKLKVVE+NLE RT EWLL Q+
Sbjct: 183 QASEVVKRQEIELQGLQMLIREKEEELEVSTNLRKFEEEKLKVVESNLEDRTREWLLIQE 242

Query: 294 ALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGK 353
            L KLA+EAS+++ +TN+ LEDF RV KLL DVRSEL+SSQKSLA SRKQMEEQE LL  
Sbjct: 243 GLNKLAKEASKQVRDTNEALEDFGRVYKLLEDVRSELISSQKSLAFSRKQMEEQEQLLKT 302

Query: 354 QLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNE 413
           QL ELEEQ+KS+ SY+ SLK+A++EVESERVKLR  EARNKELERDLSMEKELVEELQ E
Sbjct: 303 QLAELEEQRKSVMSYLNSLKNAKIEVESERVKLRTAEARNKELERDLSMEKELVEELQKE 362

Query: 414 LNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASL 473
           L KEK SLQQ I++ S LQ+EL +KN EFGE ++LL+ KESDLVEAKL+IQNLKS+QASL
Sbjct: 363 LEKEKSSLQQEIEKTSFLQQELLQKNIEFGEMQHLLQAKESDLVEAKLDIQNLKSEQASL 422

Query: 474 QLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNEL 533
           QLILE+KD +L +AR+ L+E+N EV EL+M+MSS+E+QLVQA   ++EK+EHV ++Q+EL
Sbjct: 423 QLILEDKDLQLFDARKNLDEVNQEVAELRMLMSSKEQQLVQATTMIKEKEEHVQVMQDEL 482

Query: 534 DGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRL 593
           + T++KVSEAE+VVE+IV+LT++LVIS K+   +    +++M LE  QQ LD+ +D+FRL
Sbjct: 483 NNTRVKVSEAESVVERIVELTNELVISIKD--QNELRQSNNMTLEFFQQPLDELSDDFRL 540

Query: 594 QTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL-EETVE 652
           Q KQ E ELKF+RE+LR+KEMEVLAAKRAL +KDEELKTVL RLD KEKEL+KL EE VE
Sbjct: 541 QKKQYETELKFSRESLRVKEMEVLAAKRALAIKDEELKTVLERLDTKEKELRKLKEEAVE 600

Query: 653 DANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKAS 712
           DANDLRKLY+LAQER GE SVGDLAIE+L+LEAAQLEVEAATSALQKL EMS ELLNKAS
Sbjct: 601 DANDLRKLYSLAQERIGESSVGDLAIEKLKLEAAQLEVEAATSALQKLAEMSRELLNKAS 660

Query: 713 LSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAGIVDG 768
           LSIE D D  IF  +   P + ++ENNEC  EV +EVARLS LTEQL+++AGI  G
Sbjct: 661 LSIEADAD--IFMPNGSGPGLVLLENNECFKEVKTEVARLSSLTEQLLQDAGITVG 714

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562046|ref|XP_003549286.1| PREDICTED: uncharacterized protein LOC100789623 [Glycine max]

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/777 (57%), Positives = 583/777 (75%), Gaps = 23/777 (2%)

Query: 1   MAFSA--RFSSNHLHLNPNPKVHWKHKLPGR--YVTSGKRRVRSL-GLVRAVLPDGKKS- 54
           MAFSA  R +S+H  L  + + + +H    R  + ++G RR R L   VR+VL D + S 
Sbjct: 1   MAFSASIRPTSSHSQLFCSVRFNRRHHSSSRIGFSSNGGRRCRRLRNSVRSVLNDNRPSA 60

Query: 55  SVNG-YGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAAL 113
           SVN  YG  E AR+L ERLF      E R++ D           +L ILESDL+A LAAL
Sbjct: 61  SVNDDYGAAESARVLFERLFT-----ENRITGDEP---------DLRILESDLEAALAAL 106

Query: 114 KKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQA 173
           K KE+ L +AER V LE+S+L   KEEL R+E EI+ A  R+EKLEEE+ ++ +KLVSQA
Sbjct: 107 KMKEDHLMEAERTVLLENSKLKLTKEELERQESEIEAARIRYEKLEEEMKETMVKLVSQA 166

Query: 174 RHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLN 233
             IE+LKLR++ RD EI A++ AL LKE E+EK+R EL ++S EAA  DSEL+ K ++L+
Sbjct: 167 GEIEELKLRVRGRDSEIDAVKYALGLKEGEVEKIRVELEERSREAANFDSELREKGRILD 226

Query: 234 EANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQD 293
           EANEV+KKQE E++ L++V++EKEEE+E  +  R+VE EKL+V EANLEK+ M+W+L+Q+
Sbjct: 227 EANEVMKKQEAELEELKRVVREKEEEIEVLLVQREVEREKLRVAEANLEKQAMDWMLAQE 286

Query: 294 ALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGK 353
            LK+L E+A+R  EE+++TLEDFRRVKKLL+DVRSELVSSQ++LASSR +MEEQE LL  
Sbjct: 287 ELKRLGEDAARHAEESSETLEDFRRVKKLLNDVRSELVSSQQALASSRSKMEEQERLLEL 346

Query: 354 QLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNE 413
           QL EL EQ+ S+ SYM +LKDAQ+EVESER KLRV E+RN+ELERDL MEKEL+ EL+ E
Sbjct: 347 QLSELGEQRASVMSYMENLKDAQIEVESERTKLRVAESRNRELERDLKMEKELISELEEE 406

Query: 414 LNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASL 473
           L KE+ SL+QA+ EV+ LQEEL +K  EF ET  +L+VKES+LV+AKLEIQ LKS++ASL
Sbjct: 407 LKKERTSLEQAVKEVALLQEELEKKTAEFRETSAVLQVKESELVDAKLEIQRLKSEKASL 466

Query: 474 QLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNEL 533
           Q ILEEKD ELS+AR+ML ++N E+ +LKM+M S+E QL++A   L++KDEHV ++QN+L
Sbjct: 467 QGILEEKDLELSSARKMLGDVNQEIYDLKMLMHSKETQLIEANSMLRDKDEHVKVIQNKL 526

Query: 534 DGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMP-TDDMGLELMQQGLDKGNDNFR 592
           + T  K  EAETVVE+I+DLT++LV S K+++ ++S P  D+MG +L+ Q L+K  +  +
Sbjct: 527 NNTNQKAFEAETVVERILDLTNRLVASIKDEDMNSSKPLLDEMGNQLLDQLLEKPANELK 586

Query: 593 LQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL-EETV 651
            Q K LE EL+ A+  L+ KEMEVLAA+RALT+KDEELK  L RLD+KE+ELKK+ EE  
Sbjct: 587 WQQKSLENELELAKVTLKEKEMEVLAAQRALTIKDEELKMTLSRLDSKEEELKKVREEVT 646

Query: 652 EDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKA 711
           ED+NDL++LYA AQER GEKS+GDLAIE+LQLEAAQLEVEAAT+ALQKL EMS +LLNKA
Sbjct: 647 EDSNDLKRLYAWAQERIGEKSLGDLAIEKLQLEAAQLEVEAATNALQKLAEMSRQLLNKA 706

Query: 712 SLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEAGIVDG 768
            +S+E D   ++   ++    I    N EC  EV + VARLS L+EQLV +AGIV  
Sbjct: 707 IMSVEADNYISVPDGNKAPDLIPDTNNPECFEEVKARVARLSSLSEQLVMQAGIVPA 763

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525716|ref|XP_004169862.1| PREDICTED: uncharacterized LOC101208859 [Cucumis sativus]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/743 (58%), Positives = 554/743 (74%), Gaps = 11/743 (1%)

Query: 30  YVTSGKRRVRSLGLVRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGV 89
           Y T+ KRR  SL +V++VL + K S++N  G  E A++LLERL+AQTQ+LEE +S+D   
Sbjct: 28  YSTNQKRRSHSLKVVQSVLNNCK-SNLNDNGANEEAKLLLERLYAQTQRLEEHVSKDPHF 86

Query: 90  GKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREID 149
            +DV  GL+LE LESDLQA LA LKKKEEDL+DAER + LE S+LN A+E+L ++E EI 
Sbjct: 87  PQDVWLGLSLENLESDLQAALAVLKKKEEDLQDAERTILLERSQLNNAREKLEKQEEEIT 146

Query: 150 VACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRS 209
           VA  + ++LE+EL ++NL LVSQ R I++LKL++ E+D+ IAA++SAL+LKE EL++MR+
Sbjct: 147 VAYRKQQELEDELKEANLNLVSQTRLIDELKLQIMEKDEGIAAVESALALKEDELKRMRA 206

Query: 210 ELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKV 269
           +L  KSEEA K + ELKSK+Q+L EANEVVK+QE E+Q L+K + EKE+E E SV L+K+
Sbjct: 207 DLAMKSEEAFKTNCELKSKSQLLTEANEVVKRQEVELQMLKKTVVEKEKEFELSVKLQKL 266

Query: 270 EEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSE 329
           E E+L+VVE NLEKRTMEWLL+Q+ LKK  +EAS++  E N T+ DF RVKKLL+DV+SE
Sbjct: 267 EVERLEVVEKNLEKRTMEWLLAQEELKKTKKEASKKTVEMNKTVNDFNRVKKLLADVKSE 326

Query: 330 LVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVT 389
           LVSSQKSL SSRK++EEQE +L +Q+ ELEEQKK + +YM+SLKDAQ+EVESERVKLR  
Sbjct: 327 LVSSQKSLVSSRKKIEEQEDILERQMAELEEQKKGINAYMSSLKDAQIEVESERVKLRFI 386

Query: 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL 449
           EA NKELE DL  EKEL +ELQ +L +EK  LQQA +E S LQ EL  K  EF +T  LL
Sbjct: 387 EAHNKELEGDLVKEKELTDELQQQLEREKSFLQQATEEKSLLQNELEHKRIEFEKTHKLL 446

Query: 450 RVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509
           + K S LVEAKLEIQ+LKSKQ SLQL+LEEKD E+ +A++ ++ LN E+ EL+ +MSS+E
Sbjct: 447 QDKASALVEAKLEIQHLKSKQVSLQLLLEEKDLEILDAQKKIQNLNQEIIELQTLMSSKE 506

Query: 510 EQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKN-DESST 568
            QL Q    L+EKDE V  +QNEL+ TKLK+SEAE  VE IVDLT+KLVIS K+ DE   
Sbjct: 507 AQLDQTTAMLKEKDERVETMQNELNDTKLKISEAEAAVEHIVDLTNKLVISIKDGDEYDV 566

Query: 569 SMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDE 628
               +++ L L QQ   K  DN RLQ KQLE EL+  +E+LR KEME+LAA+RALTVKDE
Sbjct: 567 LKLNENLSLNLQQQLFKKPTDNIRLQKKQLETELELTKESLRRKEMEILAAERALTVKDE 626

Query: 629 ELKTVLGRLDA-KEKELKKLEETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQ 687
           ELKTV  RLD  +++  K  EE  E+   LR+ Y LAQ+  G    GDLAIERLQ EAAQ
Sbjct: 627 ELKTVQERLDGKEKEFEKMKEEMDEEGKHLREQYTLAQDNVG----GDLAIERLQFEAAQ 682

Query: 688 LEVEAATSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPR---ISVIENNEC-LT 743
           LEVEAATSALQKLT+MS +LLNKA  S+E D  +      + D     ++ I+NN     
Sbjct: 683 LEVEAATSALQKLTDMSRDLLNKAGRSLEADIGSRSIRIQQHDDDNNGVNGIDNNNSRFN 742

Query: 744 EVGSEVARLSVLTEQLVKEAGIV 766
           EV  EV+RLS LTEQL+KEAGI 
Sbjct: 743 EVKVEVSRLSSLTEQLLKEAGIF 765

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437152|ref|XP_004136356.1| PREDICTED: uncharacterized protein LOC101208859 [Cucumis sativus]

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/743 (58%), Positives = 554/743 (74%), Gaps = 11/743 (1%)

Query: 30  YVTSGKRRVRSLGLVRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGV 89
           Y T+ KRR  SL +V++VL + K S++N  G  E A++LLERL+AQTQ+LEE +S+D   
Sbjct: 36  YSTNQKRRSHSLKVVQSVLNNCK-SNLNDNGANEEAKLLLERLYAQTQRLEEHVSKDPHF 94

Query: 90  GKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREID 149
            +DV  GL+LE LESDLQA LA LKKKEEDL+DAER + LE S+LN A+E+L ++E EI 
Sbjct: 95  PQDVWLGLSLENLESDLQAALAVLKKKEEDLQDAERTILLERSQLNNAREKLEKQEEEIT 154

Query: 150 VACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRS 209
           VA  + ++LE+EL ++NL LVSQ R I++LKL++ E+D+ IAA++SAL+LKE EL++MR+
Sbjct: 155 VAYRKQQELEDELKEANLNLVSQTRLIDELKLQIMEKDEGIAAVESALALKEDELKRMRA 214

Query: 210 ELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKV 269
           +L  KSEEA K + ELKSK+Q+L EANEVVK+QE E+Q L+K + EKE+E E SV L+K+
Sbjct: 215 DLAMKSEEAFKTNCELKSKSQLLTEANEVVKRQEVELQMLKKTVVEKEKEFELSVKLQKL 274

Query: 270 EEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSE 329
           E E+L+VVE NLEKRTMEWLL+Q+ LKK  +EAS++  E N T+ DF RVKKLL+DV+SE
Sbjct: 275 EVERLEVVEKNLEKRTMEWLLAQEELKKTKKEASKKTVEMNKTVNDFNRVKKLLADVKSE 334

Query: 330 LVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVT 389
           LVSSQKSL SSRK++EEQE +L +Q+ ELEEQKK + +YM+SLKDAQ+EVESERVKLR  
Sbjct: 335 LVSSQKSLVSSRKKIEEQEDILERQMAELEEQKKGINAYMSSLKDAQIEVESERVKLRFI 394

Query: 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL 449
           EA NKELE DL  EKEL +ELQ +L +EK  LQQA +E S LQ EL  K  EF +T  LL
Sbjct: 395 EAHNKELEGDLVKEKELTDELQQQLEREKSFLQQATEEKSLLQNELEHKRIEFEKTHKLL 454

Query: 450 RVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509
           + K S LVEAKLEIQ+LKSKQ SLQL+LEEKD E+ +A++ ++ LN E+ EL+ +MSS+E
Sbjct: 455 QDKASALVEAKLEIQHLKSKQVSLQLLLEEKDLEILDAQKKIQNLNQEIIELQTLMSSKE 514

Query: 510 EQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKN-DESST 568
            QL Q    L+EKDE V  +QNEL+ TKLK+SEAE  VE IVDLT+KLVIS K+ DE   
Sbjct: 515 AQLDQTTAMLKEKDERVETMQNELNDTKLKISEAEAAVEHIVDLTNKLVISIKDGDEYDV 574

Query: 569 SMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDE 628
               +++ L L QQ   K  DN RLQ KQLE EL+  +E+LR KEME+LAA+RALTVKDE
Sbjct: 575 LKLNENLSLNLQQQLFKKPTDNIRLQKKQLETELELTKESLRRKEMEILAAERALTVKDE 634

Query: 629 ELKTVLGRLDA-KEKELKKLEETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQ 687
           ELKTV  RLD  +++  K  EE  E+   LR+ Y LAQ+  G    GDLAIERLQ EAAQ
Sbjct: 635 ELKTVQERLDGKEKEFEKMKEEMDEEGKHLREQYTLAQDNVG----GDLAIERLQFEAAQ 690

Query: 688 LEVEAATSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPR---ISVIENNEC-LT 743
           LEVEAATSALQKLT+MS +LLNKA  S+E D  +      + D     ++ I+NN     
Sbjct: 691 LEVEAATSALQKLTDMSRDLLNKAGRSLEADIGSRSIRIQQHDDDNNGVNGIDNNNSRFN 750

Query: 744 EVGSEVARLSVLTEQLVKEAGIV 766
           EV  EV+RLS LTEQL+KEAGI 
Sbjct: 751 EVKVEVSRLSSLTEQLLKEAGIF 773

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437005|ref|XP_003588778.1| hypothetical protein MTR_1g012620 [Medicago truncatula] gi|355477826|gb|AES59029.1| hypothetical protein MTR_1g012620 [Medicago truncatula]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/777 (52%), Positives = 548/777 (70%), Gaps = 44/777 (5%)

Query: 7   FSSNHLHLNPNPK-------VHWKHKLPGRY---VTSGKR--RVRSLGLVRAVLPDGKKS 54
           FS++ L    +P        + +  KL  +    VT G++   +R+   V++VL D +  
Sbjct: 3   FSASSLRPTSSPSYSQLLCSLRYNRKLRSQINFVVTQGRKGCWLRNGVTVKSVLNDNR-P 61

Query: 55  SVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALK 114
           S N YG  E AR LLERLF QTQKL+ RM     +G++     +L   ESDL + L  LK
Sbjct: 62  SFNNYGAPESAR-LLERLFEQTQKLDNRM-----IGEEP----DLRDFESDLLSALMELK 111

Query: 115 KKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQAR 174
           +KE+ L++ ER V LE+ +L  AKEEL R+E EI  A  ++E+LE+E+ ++   LVSQA 
Sbjct: 112 EKEDHLQEVERTVLLENGKLKDAKEELERQEGEIKAAREKYERLEDEMKEAMASLVSQAG 171

Query: 175 HIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNE 234
            +E+LKLRL++RD E   ++ ALSLKE E+EKM+  L KKSEEAA +DSEL+ K Q+L+E
Sbjct: 172 QVEELKLRLRDRDSETDGLRDALSLKEEEMEKMKIGLAKKSEEAAYVDSELRQKVQLLSE 231

Query: 235 ANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDA 294
           ANEVVKKQE E+Q LR V+Q++EEEL  SVA R VE EKLKV EA+LEK+ MEWLL+Q+ 
Sbjct: 232 ANEVVKKQEIELQELRSVVQQREEELRLSVAARDVEGEKLKVAEASLEKQAMEWLLTQEE 291

Query: 295 LKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQ 354
           LK+L EEAS+  +E ++TLEDFRRVKKLLSDVRSELVSSQ+SLASSR +M+ QE LL +Q
Sbjct: 292 LKRLEEEASKHAQERSETLEDFRRVKKLLSDVRSELVSSQQSLASSRYKMQVQEGLLEQQ 351

Query: 355 LVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNEL 414
           L EL +Q++S+  YM +LKDAQ+EVE+ER KL V EA NKELE+DLS+EKEL+++LQ EL
Sbjct: 352 LAELADQRESVMLYMENLKDAQIEVENERTKLSVAEALNKELEQDLSVEKELMKKLQEEL 411

Query: 415 NKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQ 474
            KEK SL+QA+ E++ LQEEL  K+ EF E   LL VKES+LV+AKL+IQ LK+++ASLQ
Sbjct: 412 KKEKASLEQAVQEMALLQEELDIKSAEFKEKSALLDVKESELVDAKLQIQELKTEKASLQ 471

Query: 475 LILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELD 534
            +LEEKD ELS+AR+ML ELN E+ +LKM+M+ +E QL++A + L+EKDEHV ++QN+L+
Sbjct: 472 ALLEEKDLELSSARKMLVELNQEISDLKMLMNDKETQLIEATNMLREKDEHVKVIQNKLN 531

Query: 535 GTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQ 594
            T LK  EAETVV +++DLT+KLV S KN++ ++S P +++G +LM    +        Q
Sbjct: 532 NTSLKAFEAETVVGRVLDLTNKLVASIKNEDINSSRPLNELGDQLMMPLSEDPTSELSWQ 591

Query: 595 TKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEE-TVED 653
            KQLE  L+                 RALT+KDEELK  L RLDAKE+EL+K ++   ED
Sbjct: 592 QKQLENVLEL----------------RALTIKDEELKMTLARLDAKEEELRKAKDMATED 635

Query: 654 ANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQL--EVEAATSALQKLTEMSGELLNKA 711
           AND + +YA+ QER  EK++ DLAIE+LQLEAAQL  EVEAATS LQKL EMS +LLNKA
Sbjct: 636 ANDHKMVYAMTQERIAEKTMDDLAIEKLQLEAAQLEDEVEAATSTLQKLAEMSQQLLNKA 695

Query: 712 SLSIETDTDNTIFPESRFDPRISVIENN--ECLTEVGSEVARLSVLTEQLVKEAGIV 766
             S+E D+  ++   +       +   N  +CL  V + VARLS LTEQLV +AG+ 
Sbjct: 696 MPSVEADSYTSLMQNNNDINLNLITNINCIDCLAVVKAGVARLSALTEQLVMDAGLA 752

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417960|ref|NP_567889.1| Myosin heavy chain-related protein [Arabidopsis thaliana] gi|23297608|gb|AAN12990.1| unknown protein [Arabidopsis thaliana] gi|332660618|gb|AEE86018.1| Myosin heavy chain-related protein [Arabidopsis thaliana]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/785 (53%), Positives = 578/785 (73%), Gaps = 29/785 (3%)

Query: 1   MAFS-------ARFSSNHLHLNPNPK-------VHWKHKLPGRYVTSGKRRVRSLGLVRA 46
           M FS       A FSS      P+P        V+ K K    + +  +R+   L  V++
Sbjct: 1   MGFSQAIRLNLASFSS------PSPCDYCLTRVVNHKQKSLVAFPSITRRKRHLLLSVQS 54

Query: 47  VLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGL-NLEILESD 105
           VL + +  ++N  G  E A +L ++LFA+T +LE + ++ S    D      NL +LESD
Sbjct: 55  VLHNTR-PNINDNGSAESANVLFDKLFARTHRLERQTNQHSVYPDDDDLPYSNLGVLESD 113

Query: 106 LQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQS 165
           L+A L AL K+EEDL DAER++  + ++LNRAKEEL +RE+ I  A  +HE L+EEL ++
Sbjct: 114 LEAALVALLKREEDLHDAERKLLSDKNKLNRAKEELEKREKTISEASLKHESLQEELKRA 173

Query: 166 NLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSEL 225
           N++L SQAR IE+LK +L+ERD+E AA+QS+L+LKE ELEKMR E+  +S+E +   SE 
Sbjct: 174 NVELASQAREIEELKHKLRERDEERAALQSSLTLKEEELEKMRQEIANRSKEVSMAISEF 233

Query: 226 KSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRT 285
           +SK+Q+L++ANEVVK+QE EI +L++ ++EKEEELE S A +K+E+EKL+  EANL+K+T
Sbjct: 234 ESKSQLLSKANEVVKRQEGEIYALQRALEEKEEELEISKATKKLEQEKLRETEANLKKQT 293

Query: 286 MEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQME 345
            EWL++QD + KL EE  +R+ E N+T+EDF +VKKLL+DVR EL+SS+++L  SR+QME
Sbjct: 294 EEWLIAQDEVNKLKEETVKRLGEANETMEDFMKVKKLLTDVRFELISSREALVFSREQME 353

Query: 346 EQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKE 405
           E+E LL KQL ELEEQ+KS+ SYM SL+DA  EVESERVKLRV EA+N  LER++S++KE
Sbjct: 354 EKELLLEKQLEELEEQRKSVLSYMQSLRDAHTEVESERVKLRVVEAKNFALEREISVQKE 413

Query: 406 LVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQN 465
           L+E+L+ EL KEK  L+ A+ ++S +Q+EL +K   F  ++NLL+ KES LVEAKLEIQ+
Sbjct: 414 LLEDLREELQKEKPLLELAMHDISVIQDELYKKANAFQVSQNLLQEKESSLVEAKLEIQH 473

Query: 466 LKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEH 525
           LKS+QASL+L+L+EKD EL+ AR  L E+N EV ELK +M SRE+QL++A + L+EKD H
Sbjct: 474 LKSEQASLELLLQEKDEELAEARNKLGEVNQEVTELKALMISREDQLMEATEMLKEKDVH 533

Query: 526 VLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDD-MGLELMQQGL 584
           +  ++ EL  +KLKV+EAE VVE+I +LT++L++S  N ++  +M  ++ + ++ MQQ L
Sbjct: 534 LHRIEGELGSSKLKVTEAEMVVERIAELTNRLLMSTTNGQNQNAMRINNEISIDSMQQPL 593

Query: 585 DKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKEL 644
           +K +D++ ++ K+L +EL F RENLRMKEMEVLA +RALT KDEE+  V+GRL+AKE+EL
Sbjct: 594 EKPHDDYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRLEAKEQEL 653

Query: 645 KKL-EETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEM 703
           KKL EET+ D+ DL+ LYALAQER GEK++GDLAIE LQLEAA LEVEAATSALQKL +M
Sbjct: 654 KKLKEETINDSEDLKVLYALAQERVGEKTMGDLAIEMLQLEAANLEVEAATSALQKLAKM 713

Query: 704 SGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEA 763
           S ELL +A +SIE DT +T+ PE  +        +NECL EV +EV RL  LTE+L++ A
Sbjct: 714 STELLTQADMSIEADTTHTVMPERGYSEG-----SNECLGEVKTEVVRLWSLTEKLLENA 768

Query: 764 GIVDG 768
           GIV G
Sbjct: 769 GIVAG 773

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13430502|gb|AAK25873.1|AF360163_1 unknown protein [Arabidopsis thaliana]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/785 (53%), Positives = 578/785 (73%), Gaps = 29/785 (3%)

Query: 1   MAFS-------ARFSSNHLHLNPNPK-------VHWKHKLPGRYVTSGKRRVRSLGLVRA 46
           M FS       A FSS      P+P        V+ K K    + +  +R+   L  V++
Sbjct: 1   MGFSQAIRLNLASFSS------PSPCDYCLTRVVNHKQKSLVAFPSITRRKRHLLLSVQS 54

Query: 47  VLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGL-NLEILESD 105
           VL + +  ++N  G  E A +L ++LFA+T +LE + ++ S    D      NL +LESD
Sbjct: 55  VLHNTR-PNINDNGSAESANVLFDKLFARTHRLERQTNQHSVYPGDDDLPYSNLGVLESD 113

Query: 106 LQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQS 165
           L+A L AL K+EEDL DAER++  + ++LNRAKEEL +RE+ I  A  +HE L+EEL ++
Sbjct: 114 LEAALVALLKREEDLHDAERKLLSDKNKLNRAKEELEKREKTISEASLKHESLQEELKRA 173

Query: 166 NLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSEL 225
           N++L SQAR IE+LK +L+ERD+E AA+QS+L+LKE ELEKMR E+  +S+E +   SE 
Sbjct: 174 NVELASQAREIEELKHKLRERDEERAALQSSLTLKEEELEKMRQEIANRSKEVSMAISEF 233

Query: 226 KSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRT 285
           +SK+Q+L++ANEVVK+QE EI +L++ ++EKEEELE S A +K+E+EKL+  EANL+K+T
Sbjct: 234 ESKSQLLSKANEVVKRQEGEIYALQRALEEKEEELEISKATKKLEQEKLRETEANLKKQT 293

Query: 286 MEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQME 345
            EWL++QD + KL EE  +R+ E N+T+EDF +VKKLL+DVR EL+SS+++L  SR+QME
Sbjct: 294 EEWLIAQDEVNKLKEETVKRLGEANETMEDFMKVKKLLTDVRFELISSREALVFSREQME 353

Query: 346 EQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKE 405
           E+E LL KQL ELEEQ+KS+ SYM SL+DA  EVESERVKLRV EA+N  LER++S++KE
Sbjct: 354 EKELLLEKQLEELEEQRKSVLSYMQSLRDAHTEVESERVKLRVVEAKNFALEREISVQKE 413

Query: 406 LVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQN 465
           L+E+L+ EL KEK  L+ A+ ++S +Q+EL +K   F  ++NLL+ KES LVEAKLEIQ+
Sbjct: 414 LLEDLREELQKEKPLLELAMHDISVIQDELYKKANAFQVSQNLLQEKESSLVEAKLEIQH 473

Query: 466 LKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEH 525
           LKS+QASL+L+L+EKD EL+ AR  L E+N EV ELK +M SRE+QL++A + L+EKD H
Sbjct: 474 LKSEQASLELLLQEKDEELAEARNKLGEVNQEVTELKALMISREDQLMEATEMLKEKDVH 533

Query: 526 VLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDD-MGLELMQQGL 584
           +  ++ EL  +KLKV+EAE VVE+I +LT++L++S  N ++  +M  ++ + ++ MQQ L
Sbjct: 534 LHRIEGELGSSKLKVTEAEMVVERIAELTNRLLMSTTNGQNQNAMRINNEISIDSMQQPL 593

Query: 585 DKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKEL 644
           +K +D++ ++ K+L +EL F RENLRMKEMEVLA +RALT KDEE+  V+GRL+AKE+EL
Sbjct: 594 EKPHDDYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRLEAKEQEL 653

Query: 645 KKL-EETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEM 703
           KKL EET+ D+ DL+ LYALAQER GEK++GDLAIE LQLEAA LEVEAATSALQKL +M
Sbjct: 654 KKLKEETINDSEDLKVLYALAQERVGEKTMGDLAIEMLQLEAANLEVEAATSALQKLAKM 713

Query: 704 SGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVARLSVLTEQLVKEA 763
           S ELL +A +SIE DT +T+ PE  +        +NECL EV +EV RL  LTE+L++ A
Sbjct: 714 STELLTQADMSIEADTTHTVMPERGYSEG-----SNECLGEVKTEVVRLWSLTEKLLENA 768

Query: 764 GIVDG 768
           GIV G
Sbjct: 769 GIVAG 773

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2864624|emb|CAA16971.1| putative protein [Arabidopsis thaliana] gi|7270123|emb|CAB79937.1| putative protein [Arabidopsis thaliana]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/740 (55%), Positives = 564/740 (76%), Gaps = 10/740 (1%)

Query: 33  SGKRRVRSLGL-VRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGK 91
           S  RR R L L V++VL + +  ++N  G  E A +L ++LFA+T +LE + ++ S    
Sbjct: 21  SITRRKRHLLLSVQSVLHNTR-PNINDNGSAESANVLFDKLFARTHRLERQTNQHSVYPD 79

Query: 92  DVQFGL-NLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDV 150
           D      NL +LESDL+A L AL K+EEDL DAER++  + ++LNRAKEEL +RE+ I  
Sbjct: 80  DDDLPYSNLGVLESDLEAALVALLKREEDLHDAERKLLSDKNKLNRAKEELEKREKTISE 139

Query: 151 ACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSE 210
           A  +HE L+EEL ++N++L SQAR IE+LK +L+ERD+E AA+QS+L+LKE ELEKMR E
Sbjct: 140 ASLKHESLQEELKRANVELASQAREIEELKHKLRERDEERAALQSSLTLKEEELEKMRQE 199

Query: 211 LLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVE 270
           +  +S+E +   SE +SK+Q+L++ANEVVK+QE EI +L++ ++EKEEELE S A +K+E
Sbjct: 200 IANRSKEVSMAISEFESKSQLLSKANEVVKRQEGEIYALQRALEEKEEELEISKATKKLE 259

Query: 271 EEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSEL 330
           +EKL+  EANL+K+T EWL++QD + KL EE  +R+ E N+T+EDF +VKKLL+DVR EL
Sbjct: 260 QEKLRETEANLKKQTEEWLIAQDEVNKLKEETVKRLGEANETMEDFMKVKKLLTDVRFEL 319

Query: 331 VSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTE 390
           +SS+++L  SR+QMEE+E LL KQL ELEEQ+KS+ SYM SL+DA  EVESERVKLRV E
Sbjct: 320 ISSREALVFSREQMEEKELLLEKQLEELEEQRKSVLSYMQSLRDAHTEVESERVKLRVVE 379

Query: 391 ARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLR 450
           A+N  LER++S++KEL+E+L+ EL KEK  L+ A+ ++S +Q+EL +K   F  ++NLL+
Sbjct: 380 AKNFALEREISVQKELLEDLREELQKEKPLLELAMHDISVIQDELYKKANAFQVSQNLLQ 439

Query: 451 VKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREE 510
            KES LVEAKLEIQ+LKS+QASL+L+L+EKD EL+ AR  L E+N EV ELK +M SRE+
Sbjct: 440 EKESSLVEAKLEIQHLKSEQASLELLLQEKDEELAEARNKLGEVNQEVTELKALMISRED 499

Query: 511 QLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSM 570
           QL++A + L+EKD H+  ++ EL  +KLKV+EAE VVE+I +LT++L++S  N ++  +M
Sbjct: 500 QLMEATEMLKEKDVHLHRIEGELGSSKLKVTEAEMVVERIAELTNRLLMSTTNGQNQNAM 559

Query: 571 PTDD-MGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEE 629
             ++ + ++ MQQ L+K +D++ ++ K+L +EL F RENLRMKEMEVLA +RALT KDEE
Sbjct: 560 RINNEISIDSMQQPLEKPHDDYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEE 619

Query: 630 LKTVLGRLDAKEKELKKL-EETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQL 688
           +  V+GRL+AKE+ELKKL EET+ D+ DL+ LYALAQER GEK++GDLAIE LQLEAA L
Sbjct: 620 INVVMGRLEAKEQELKKLKEETINDSEDLKVLYALAQERVGEKTMGDLAIEMLQLEAANL 679

Query: 689 EVEAATSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSE 748
           EVEAATSALQKL +MS ELL +A +SIE DT +T+ PE  +        +NECL EV +E
Sbjct: 680 EVEAATSALQKLAKMSTELLTQADMSIEADTTHTVMPERGYSEG-----SNECLGEVKTE 734

Query: 749 VARLSVLTEQLVKEAGIVDG 768
           V RL  LTE+L++ AGIV G
Sbjct: 735 VVRLWSLTEKLLENAGIVAG 754

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	771
TAIR|locus:2116500	783	AT4G32190 "AT4G32190" [Arabido	0.942	0.928	0.453	2e-152
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.599	0.451	0.212	7.9e-19
ZFIN|ZDB-GENE-030131-731	904	hmmr "hyaluronan-mediated moti	0.630	0.537	0.227	2.1e-16
UNIPROTKB|P93203	697	MFP1 "MAR-binding filament-lik	0.605	0.670	0.215	7.7e-16
TAIR|locus:2181241	1181	AT5G27220 "AT5G27220" [Arabido	0.609	0.397	0.221	1.6e-14
WB|WBGene00010306	1133	F59A2.6 [Caenorhabditis elegan	0.647	0.440	0.212	4.2e-14
UNIPROTKB|E2R200	2684	CENPE "Uncharacterized protein	0.608	0.174	0.209	4.5e-14
UNIPROTKB|E1BRE5	1411	EEA1 "Uncharacterized protein"	0.609	0.333	0.209	5.6e-14
SGD|S000002216	1790	USO1 "Protein involved in the	0.651	0.280	0.204	7.5e-14
UNIPROTKB|F1SQ11	1411	EEA1 "Uncharacterized protein"	0.526	0.287	0.216	2.5e-13

TAIR|locus:2116500 AT4G32190 "AT4G32190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
 Identities = 334/737 (45%), Positives = 473/737 (64%)

Query:    36 RRVRSLGL-VRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQ 94
             RR R L L V++VL +  + ++N  G  E A +L ++LFA+T +LE + ++ S    D  
Sbjct:    43 RRKRHLLLSVQSVLHN-TRPNINDNGSAESANVLFDKLFARTHRLERQTNQHSVYPDDDD 101

Query:    95 FGL-NLEILESXXXXXXXXXXXXXXXXXXXXRRVCLEHSXXXXXXXXXXXXXXXIDVACS 153
                 NL +LES                    R++  + +               I  A  
Sbjct:   102 LPYSNLGVLESDLEAALVALLKREEDLHDAERKLLSDKNKLNRAKEELEKREKTISEASL 161

Query:   154 RHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXXXXX 213
             +HE L+EEL ++N++L SQAR IE+LK +L+ERD+E AA+Q                   
Sbjct:   162 KHESLQEELKRANVELASQAREIEELKHKLRERDEERAALQSSLTLKEEELEKMRQEIAN 221

Query:   214 XXXXAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASXXXXXXXXXX 273
                  +   SE +SK+Q+L++ANEVVK+QE EI +L++ ++EKEEELE S          
Sbjct:   222 RSKEVSMAISEFESKSQLLSKANEVVKRQEGEIYALQRALEEKEEELEISKATKKLEQEK 281

Query:   274 XXXXXXXXXXRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSS 333
                       +T EWL++QD + KL EE  +R+ E N+T+EDF +VKKLL+DVR EL+SS
Sbjct:   282 LRETEANLKKQTEEWLIAQDEVNKLKEETVKRLGEANETMEDFMKVKKLLTDVRFELISS 341

Query:   334 QKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARN 393
             +++L  SR+QMEE+E LL KQL ELEEQ+KS+ SYM SL+DA  EVESERVKLRV EA+N
Sbjct:   342 REALVFSREQMEEKELLLEKQLEELEEQRKSVLSYMQSLRDAHTEVESERVKLRVVEAKN 401

Query:   394 KELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKE 453
               LER++S++KEL+E+L+ EL KEK  L+ A+ ++S +Q+EL +K   F  ++NLL+ KE
Sbjct:   402 FALEREISVQKELLEDLREELQKEKPLLELAMHDISVIQDELYKKANAFQVSQNLLQEKE 461

Query:   454 SDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLV 513
             S LVEAKLEIQ+LKS+QASL+L+L+EKD EL+ AR  L E+N EV ELK +M SRE+QL+
Sbjct:   462 SSLVEAKLEIQHLKSEQASLELLLQEKDEELAEARNKLGEVNQEVTELKALMISREDQLM 521

Query:   514 QAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMP-T 572
             +A + L+EKD H+  ++ EL  +KLKV+EAE VVE+I +LT++L++S  N ++  +M   
Sbjct:   522 EATEMLKEKDVHLHRIEGELGSSKLKVTEAEMVVERIAELTNRLLMSTTNGQNQNAMRIN 581

Query:   573 DDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKT 632
             +++ ++ MQQ L+K +D++ ++ K+L +EL F RENLRMKEMEVLA +RALT KDEE+  
Sbjct:   582 NEISIDSMQQPLEKPHDDYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINV 641

Query:   633 VLGRLDAXXXXXXXXXX-TVEDANDLRKLYALAQERFGEKSVGDXXXXXXXXXXXXXXXX 691
             V+GRL+A           T+ D+ DL+ LYALAQER GEK++GD                
Sbjct:   642 VMGRLEAKEQELKKLKEETINDSEDLKVLYALAQERVGEKTMGDLAIEMLQLEAANLEVE 701

Query:   692 XXTSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFDPRISVIENNECLTEVGSEVAR 751
               TSALQKL +MS ELL +A +SIE DT +T+ PE  +        +NECL EV +EV R
Sbjct:   702 AATSALQKLAKMSTELLTQADMSIEADTTHTVMPERGYSEG-----SNECLGEVKTEVVR 756

Query:   752 LSVLTEQLVKEAGIVDG 768
             L  LTE+L++ AGIV G
Sbjct:   757 LWSLTEKLLENAGIVAG 773

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 262 (97.3 bits), Expect = 7.9e-19, P = 7.9e-19
 Identities = 104/490 (21%), Positives = 217/490 (44%)

Query:   157 KLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXXXXXXXX 216
             ++E+ + Q   K   Q     +L+  + +  Q++A+ Q                      
Sbjct:   419 QIEKLVDQLEAKQSEQQTTTNNLQNEISQLKQQLASNQSTESQALQSKITELSQLQSEFE 478

Query:   217 XAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASXXXXXXXXXXXXX 276
                K+ ++L+SK   L E +   KKQ   ++   +  Q K+E+L+ S             
Sbjct:   479 ---KLQNQLQSKDSELLETS---KKQSALLEQQSEDSQSKDEKLK-SVELNLQQTLQQLQ 531

Query:   277 XXXXXXXRTMEWLLSQDALKKLAEEASRRMEET-NDTLEDFRRVKKLLSDVRSELVSSQK 335
                         L  Q    +  ++  + +E T   TL+  + VK  L        S  +
Sbjct:   532 SKDQELQNVKSQLEQQSEDSESKDQKLKSVELTLQQTLQQLQDVKSQLEQQSEHNESKDE 591

Query:   336 SLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKE 395
              L S    +++Q      +L   +EQ K L S ++S+K+ Q+  +S      ++  +++ 
Sbjct:   592 KLKSIELNLQQQLQSKDSELSSKDEQLKCLESELSSVKE-QLSSQSSNTDSELSSVKDQL 650

Query:   396 LERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESD 455
             L +D  + K   E+L N+ ++ K S++    ++ S++++L  K+ E   T++ L  K+  
Sbjct:   651 LSKDSEL-KSKDEQLSNKDSQIK-SIES---DLQSVKDQLSSKDQELQSTKDQLSSKDEQ 705

Query:   456 LVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQA 515
             L     +I++++S   S++  L  KD EL + +  L   + E++  K  +S+++++L  A
Sbjct:   706 LSNKDTQIKSIESDLQSVKDQLSSKDQELQSTKDQLSSKDQELQSTKDQLSTKDQELQSA 765

Query:   516 MDTLQ---EKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTS--- 569
              D L       + +     EL  TK ++S  ++ ++ I D      +S K+ E  +S   
Sbjct:   766 KDQLSCQSSTTDQLSAKDTELQSTKDQLSSKDSELQSIKDQ-----LSTKDSELQSSKDQ 820

Query:   570 MPTDDMGLELMQQGLDKGNDNFRLQTKQL---EIELKFARENLRMKEMEVLAAKRALTVK 626
             + + D  L+ ++  L   + + +    QL   + +L+  ++ L  K+ E+ + K  LT K
Sbjct:   821 LSSKDSELQSIKDQLSSKDSDLQSVKDQLSSKDSDLQSTKDQLSSKDQELQSVKDELTSK 880

Query:   627 DEELKTVLGR 636
             D+EL+ +  +
Sbjct:   881 DQELQQITSK 890

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-030131-731 hmmr "hyaluronan-mediated motility receptor (RHAMM)" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 2.1e-16, P = 2.1e-16
 Identities = 119/524 (22%), Positives = 222/524 (42%)

Query:   168 KLVSQARHIEDLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXXXXXXXXXAAKIDSELKS 227
             K+ + +  + + K +L  +D+E++ +Q                           + +L+ 
Sbjct:   172 KINALSMELIEAKNKLDAKDKELSFLQISSEGKVKVLETDLETAKTTFRVLQDRNKDLED 231

Query:   228 KAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASXXXXXXXXXXXXXXXXXXXXR-TM 286
               Q     NE++   E E+  L  +IQE  EE++A                     + TM
Sbjct:   232 LHQETRAQNELL---ENEMDKLHNIIQELREEIKALQSYLDSANEEIQDLRIKLQDKSTM 288

Query:   287 EWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEE 346
             E  +S DA + L+E   +++E+    L++ +   K+  D   E+  S++ L  S+  +EE
Sbjct:   289 ERRVS-DAQENLSE-VEQKLEKCTAELQECQEALKVKED---EVQRSKQELRDSQNALEE 343

Query:   347 QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTE---ARNKEL----ERD 399
             +E  + +   +L+E + SL      +K    ++E     +R  E   AR KE+    E +
Sbjct:   344 KEKEIEQHAQDLQESQSSLKELEERMKQGDRDLEESWSLVRQQEQELARVKEVLRRTEEE 403

Query:   400 LSMEKELVEELQNELNKEKYSLQQ-AIDEVSSLQEEL-GRKNTEFGETENLLRVKESDLV 457
             L     L+ E  + L  E+  +Q+  + +V  L+ EL   + +   ETE   ++KE    
Sbjct:   404 LDQRVALMGERCSLLEDERAKMQEEGLRQVEELKAELCSLEESRKTETEAYEKLKEEHCA 463

Query:   458 EAKLEIQNLKSKQASLQLILEE-KDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAM 516
               K +++  K+   SL  +LE  +D   +  RQ+ EEL + + EL  +   ++EQ  +  
Sbjct:   464 VTK-QLEEEKTHSGSLASLLERLRDDTEAERRQLGEELEDALEEL--VELEKQEQCSE-- 518

Query:   517 DTLQEKDEHVLILQNELDGTKLKVSEAE---TVVE-QIVDLTHKLVISN-KNDESSTSMP 571
             + +Q+     L L N+    +LK S AE   T  E Q ++  H   I   + D +S    
Sbjct:   519 EAIQQ-----LTLNNQTLEQELKKSCAELQKTCAEMQALEEAHVRAIKKLEEDHTSCLAK 573

Query:   572 TDDM--GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEE 629
               D+    E  +Q L    D+   Q  QL  E+   ++ L+  + ++L+ +     K EE
Sbjct:   574 LGDVTTDFERTRQALGNQKDHAEAQVHQLVEEINQLKQQLQQDQQKLLSQQEIQDQKQEE 633

Query:   630 LKTVLGRLDAXXXXXXXXXXTVEDAN--DLRKLYALAQERFGEK 671
                +L  +               + +  +LR L    ++  GEK
Sbjct:   634 QARMLLEVQTKLAQREEELKRAAETHSEELRCLQMDVEQERGEK 677

GO:0005540 "hyaluronic acid binding" evidence=IEA

UNIPROTKB|P93203 MFP1 "MAR-binding filament-like protein 1" [Solanum lycopersicum (taxid:4081)]

 Score = 232 (86.7 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 106/491 (21%), Positives = 216/491 (43%)

Query:   156 EKLEEEL-GQSNLKLVSQARHIEDLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXXXXXX 214
             E L+ E+ G  N  L++     + L+  LKE+   I  ++                    
Sbjct:   211 EDLKFEIKGLQN-DLMNTKEDKKKLQEELKEKLDLIQVLEEKITLLTTEIKDKEVSLRSN 269

Query:   215 XXXAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASXXXXXXXXXXX 274
                 A+ +SE+ S + M  ++ + +    +EI+ L+  IQ++E ELE             
Sbjct:   270 TSKLAEKESEVNSLSDMYQQSQDQLMNLTSEIKELKDEIQKRERELELKCVSEDNLNVQL 329

Query:   275 XXXXXXXXXRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKL---LSDVRSELV 331
                         E    Q    +    +  ++       E  +R+ +L   L    SE  
Sbjct:   330 NSLLLERDESKKELHAIQKEYSEFKSNSDEKVASDATLGEQEKRLHQLEEQLGTALSEAS 389

Query:   332 SSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEA 391
              ++  +A   ++ E    ++  +L  + + K+ +     SL++++ EV    V+L     
Sbjct:   390 KNEVLIADLTREKENLRRMVDAELDNVNKLKQEIEVTQESLENSRSEVSDITVQLEQLRD 449

Query:   392 RNKELERDLS-MEKELVE---ELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE-TE 446
              + +LER++S ++ EL E    LQ  +++ K+S +    E+++ +E L + N E    ++
Sbjct:   450 LSSKLEREVSKLQMELEETRASLQRNIDETKHSSELLAAELTTTKELLKKTNEEMHTMSD 509

Query:   447 NLLRVKES-DLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIM 505
              L+ V E+ D ++ +L +   K ++ +   + +EK   +    + L+ L +++   K + 
Sbjct:   510 ELVAVSENRDSLQTEL-VNVYKKREHTRNELKQEKTI-VRTLEEELKFLESQITREKELR 567

Query:   506 SSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDE 565
              S E++L +A ++L E + +VL L  EL+    + S  E   E      H+  +S +   
Sbjct:   568 KSLEDELEKATESLDEINRNVLALAEELELATSRNSSLEDERE-----VHRQSVSEQKQI 622

Query:   566 SSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFAR-ENLRMKEMEVLAAKRALT 624
             S  +    +    L+ + L K  ++   + K+LE E+  A+ E LR++  ++ + K    
Sbjct:   623 SQEAQENLEDAHSLVMK-LGKERESLEKRAKKLEDEMAAAKGEILRLRS-QINSVKAP-- 678

Query:   625 VKDEELKTVLG 635
             V+DEE K V G
Sbjct:   679 VEDEE-KVVAG 688

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2181241 AT5G27220 "AT5G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 109/493 (22%), Positives = 213/493 (43%)

Query:   152 CSRHEKLEEELGQSNLKLVSQARHIE-DLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXX 210
             CS  E+ +   GQ + ++V   R  + DL L+ +E  Q +  ++                
Sbjct:   121 CSVEERSKR--GQLS-EIVELLRKSQVDLDLKGEELRQMVTHLERYRVEVKEEKEHLRRT 177

Query:   211 XXXXXXXAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASXXXXXXX 270
                      +I+ + K    ++N+  +  K+ ET  +SL  +  + E EL+         
Sbjct:   178 DNGRRELEEEIERKTKDLTLVMNKIVDCDKRIET--RSLELIKTQGEVELKEKQLDQMKI 235

Query:   271 XXXXXXXXXXXXXRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSEL 330
                          + +    +Q   +KL EE  R+ ++    ++     +KL      EL
Sbjct:   236 DLEKYCVDVNAEKKNLG--RTQTHRRKLEEEIERKTKDLTLVMDKIAECEKLFERRSLEL 293

Query:   331 VSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTE 390
             + +Q  +    KQ+E+ +  L +   E+    + L    T  ++   E+E +R +L    
Sbjct:   294 IKTQGEVELKGKQLEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERKRKELTAVL 353

Query:   391 ARNKELERDLSM-EKELV--EELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETEN 447
              +  E  + + + E+EL   ++L +  + E  S ++ +D +S   E +   N E  ET  
Sbjct:   354 DKTAEYGKTIELVEEELALQQKLLDIRSSELVSKKKELDGLSLDLELVNSLNNELKETVQ 413

Query:   448 LLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS 507
              +  K  +L + +  IQ       S++L+LEE   EL+   +   E+   VR+L + + S
Sbjct:   414 RIESKGKELEDMERLIQERSGHNESIKLLLEEHSEELAIKEERHNEIAEAVRKLSLEIVS 473

Query:   508 REEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESS 567
             +E+ + Q    L EK +H    Q +LD T+ K  E ET  E +        + +   E  
Sbjct:   474 KEKTIQQ----LSEK-QHSK--QTKLDSTE-KCLE-ETTAELVSKENELCSVKDTYRECL 524

Query:   568 TSMPTDDMGLELMQQGLDKGNDNFR-LQTKQLEIELKFARENLRMKEMEVLAAKRALTVK 626
              +    +  L+  Q+ + K  D+ +  Q+K+ E+ +K  +E+L   E E+   K+ + V+
Sbjct:   525 QNWEIKEKELKSFQEEVKKIQDSLKDFQSKEAEL-VKL-KESLTEHEKELGLKKKQIHVR 582

Query:   627 DEELKTVLGRLDA 639
              E+++    +LDA
Sbjct:   583 SEKIELKDKKLDA 595

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

WB|WBGene00010306 F59A2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 219 (82.2 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 116/545 (21%), Positives = 229/545 (42%)

Query:   154 RHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXXXXX 213
             + ++ EE+L ++  KL S+   ++++  +L++ ++E+ A +                   
Sbjct:   110 KEQEREEQLAKAMEKLNSEQNILDEVTKKLEQSEEEVLAARGAIQELTEKLEESEKETST 169

Query:   214 XXXXAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRK-------VIQEKEEELEASXXX 266
                    +  +L S    L E +++++  + ++ +  K       ++++K EE+E +   
Sbjct:   170 AKTELEAVSKKLDSSETSLKEFSDMIEAMKIQLINCEKQKDEAVELLKQKLEEVEKNMSD 229

Query:   267 XXXXXXXXXXXXXXXXXRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLL-SD 325
                              +  E   + + +KK  EEA   +E      E+ R +K  L SD
Sbjct:   230 VEVQKQLLLESTTSEMKQHAE---AAEIVKKQLEEAQSSIENLKKDAENERNLKTALESD 286

Query:   326 VRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVK 385
               S +    K + +++K++E  E    +   +++  +K   +    ++  Q   E E  K
Sbjct:   287 ESSAISEITKQMEAAKKELEASEKEKSELREQMDRLQKVHNAGQEDIQKLQKTWELEMAK 346

Query:   386 L-RVTE----ARNK---ELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGR 437
             + + TE    AR +   ELE      K + EE    + + + +L  A  EV  L+E+L R
Sbjct:   347 IAKSTEDEKLAREQLAGELENAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLER 406

Query:   438 KNTEFGETENLLRVKESDLV-EAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNN 496
               +    ++ L   +++D + E + E+QN + K++S +L  E  +  + +    LE  N+
Sbjct:   407 AQSALESSQELASSQKADKIQELEKELQNAQ-KRSSEEL--ETANEMVRSLTATLENSNS 463

Query:   497 EVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHK 556
             E   LK  + + +++L     T +   E + +L   L       +E E    QI +L  +
Sbjct:   464 ETEILKQKLETLDKELQARQQTEKALTEEINVLTTSL-------AEKEQQTAQIQNLQTQ 516

Query:   557 LVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARE------NLR 610
             +       E    +    + L+   Q      +  R + +QLE +LK   +      N  
Sbjct:   517 IYQMEVEKEEKVELVK--VQLQQAAQSSSSAEEALRAEIEQLEAKLKAVEQAKAEALNSL 574

Query:   611 MKEMEVLAAK-RALTV-KDEELKTVLGRLDAXXXXXXXXXXTVEDA--NDLRKLYALAQE 666
             + E E L A+   L V K+E+L+ V  +L            +VE A   ++ KL A  QE
Sbjct:   575 LAEKEHLQAQLHQLGVEKEEKLEMVKVQLQQAAQSSS----SVEQALRAEIEKLEAKLQE 630

Query:   667 RFGEK 671
                EK
Sbjct:   631 IEEEK 635

GO:0000042 "protein targeting to Golgi" evidence=IEA

UNIPROTKB|E2R200 CENPE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 223 (83.6 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 103/491 (20%), Positives = 223/491 (45%)

Query:   154 RHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXXXXX 213
             +H + EEEL  +   L  Q   I+ L++ L ER+ E++++Q                   
Sbjct:  1458 KHLETEEELKVARCHLKEQEETIDKLRVNLSERETELSSLQKELEITNNELQKKIQELHE 1517

Query:   214 XXXX-AAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASXXXXXXXXX 272
                  + K  +E + K   L +  E ++ +++ +Q++     +  E+L+ S         
Sbjct:  1518 KQQFMSTKEITETQEKMSELEQLKEQLRVKDSSLQNIESEKLKLTEKLQESQDKIKIVIK 1577

Query:   273 XXXXXXXXXXXRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDV-RSELV 331
                          ME    +  +K++  E     E+ +  L+  + V +    +   E +
Sbjct:  1578 ERDELKRVQELLQMERDQLKANIKEIVAEIQELQEKEHQLLK-MKTVSETQEKICEMEHL 1636

Query:   332 SSQ-KSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQ--VEVESERVK--L 386
              +Q ++  S+ + +E +   L ++L E  E+ +S+T     L+  +  ++VE +++K  L
Sbjct:  1637 KNQFEAQKSTLENIEMENARLTQRLHENLEEMRSVTKERDDLRSIEETLKVERDQLKENL 1696

Query:   387 RVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETE 446
             R T  R+ E + +L + +  V+E Q  ++K +  + +  DE+S++Q +L   N    +T+
Sbjct:  1697 RETVIRDLEKQEELRIARMHVKEHQETIDKLRGLVSEKTDELSNMQIDLENTNDAL-KTQ 1755

Query:   447 NLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMS 506
             +L + +E  +V   + ++  +     L+ ++ EK  E++N +  LE  N +++E    + 
Sbjct:  1756 DLEKQEELRIV--CMHVKEHQETIDKLRGLVSEKTDEIANMQMDLENSNAKLQEKIQQLK 1813

Query:   507 SREEQLVQAMDTL---QEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKN 563
             + E QL +  + +   Q+K   +  L+ +L G  L + + E  +E + +L  KL   N  
Sbjct:  1814 ANEHQLFKLKEDVSETQKKTSEIERLKKQLKGQSLTLDKIE--MENL-NLAQKLH-ENLE 1869

Query:   564 DESSTSMPTDDMGLELMQQGLDKGNDNFR-LQTKQLEIELKFARENLRMKEMEVLAAKRA 622
             +  S     D++ LE  Q   +      R L+T+Q   ELK A  +L+  +  +   +  
Sbjct:  1870 EMKSVMQERDNLKLERDQLKTNLQETIARDLETQQ---ELKIALLHLKEHQETIDKFRER 1926

Query:   623 LTVKDEELKTV 633
             ++ K  ++  +
Sbjct:  1927 VSEKTTQISNI 1937

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E1BRE5 EEA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 5.6e-14, P = 5.6e-14
 Identities = 108/516 (20%), Positives = 218/516 (42%)

Query:   154 RHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXXXXX 213
             +H  LE++  +   +L      + D K   ++  QE+   +                   
Sbjct:   717 QHLYLEQKTEELEGQLKKLEADVLDAKASKEQALQELQQQRQQSTELDLRIAELSKQLEA 776

Query:   214 XXXXAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVI----QEKEEELEASXXXXXX 269
                  +   S+L+ K++ L +A + + KQE E  SL+K +    Q+  ++L+        
Sbjct:   777 EREAMSSAKSDLQKKSEALEQAKQQISKQEEENASLKKNLEKSSQDTSKQLKDLDCKMQA 836

Query:   270 XXXXXXXXXXXXXXRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFR----RVKKLLSD 325
                              +   +++ L K +E   +R EE    +E  +     ++K   +
Sbjct:   837 ATSELQQVKLEKDTLLKDLTSTKEKLSKSSESFKKRKEELEKEIEKGKAAVAEMEKSYQE 896

Query:   326 VRSELVSSQKSLASSRKQME---EQEHLLGKQL-VELEEQKKSLTSYMTSLKDAQVEVES 381
             V+ +L    +S+A  R +++   E++  + KQL +EL+  +  +      LK+ +   + 
Sbjct:   897 VKQQLQVQTESVAKERNELKNSLEKKEGISKQLSIELDSTRAQVLEIQGLLKEKENSEQH 956

Query:   382 ERVKLR-VTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGR--- 437
              + KLR + E+  ++ +   +++ EL   L  +   E    QQ I     L+ E G+   
Sbjct:   957 LQGKLREMKESFEQKKKHSETLQTELKTALLEKAELENKLQQQTILSAQELKAEKGKLAD 1016

Query:   438 -KNTEFGETENLLRV------KESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQM 490
              + T     EN+ ++      KES+L+  +   Q+LKS +  L L  EE    L ++R  
Sbjct:  1017 LQKTHEKNKENMEKLQLDLYGKESELLATR---QDLKSTEEKLALAQEE----LVSSRNR 1069

Query:   491 LEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQI 550
             +   N +++ELK   S+ E+   +    L EK + +  LQNE      ++ + + +  + 
Sbjct:  1070 IASSNQQIQELKKAKSTLEQDASKKEQQLGEKAKMLQDLQNE------RILKEKDLANEK 1123

Query:   551 VDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFR-----LQTKQLEIELKFA 605
                T    I ++ ++ S  +  +   L + +Q  +K   N +     L  ++LE++ K  
Sbjct:  1124 CKTTELQEIRSRLEKESAKLSEE---LRICKQEFEKEVANLKDAKQLLIQQKLELQGKID 1180

Query:   606 REN--LRMKEMEVLAAKRALTVKDEELKTVLGRLDA 639
               N  L  ++    A K  L  ++EELK     ++A
Sbjct:  1181 NMNSTLEQEKKNQQAVKDQLKKREEELKKECAEIEA 1216

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 219 (82.2 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 111/544 (20%), Positives = 236/544 (43%)

Query:   155 HEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQXXXXXXXXXXXXXXXXXXXX 214
             HE L  +L +   ++ ++ R   +    + + + EI + Q                    
Sbjct:  1154 HEDLAAQLKKYEEQIANKERQYNE---EISQLNDEITSTQQENESIKKKNDELEGEVKAM 1210

Query:   215 XXXAAKIDSELKSKAQMLN-EANEVVKKQETE----IQSLRKVIQE--KEEELEASXXXX 267
                + +  +  KS+   LN +  E+ KK ET     ++S++ V  E  K +EL+      
Sbjct:  1211 KSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFK 1270

Query:   268 XXXXXXXXXXXXXXXXRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVR 327
                             +  ++L  Q   +K+ EE   +  E    LE    + K      
Sbjct:  1271 EKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAKTTELKIQLEKITNLSKAKEKSE 1330

Query:   328 SELVSSQKSLASSRKQMEEQ-EHLLGKQLVE---LEEQKKSLTSYMTSLKDAQVE----V 379
             SEL   +K+ +  RK  EEQ E L  +  ++    E+++K L    +++     E    +
Sbjct:  1331 SELSRLKKTSSEERKNAEEQLEKLKNEIQIKNQAFEKERKLLNEGSSTITQEYSEKINTL 1390

Query:   380 ESERVKLR-VTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAI-DEVSSLQEELGR 437
             E E ++L+   E + KE++   S E E V    +EL +EK +  +++ DE+ S ++++ R
Sbjct:  1391 EDELIRLQNENELKAKEIDNTRS-ELEKVSLSNDELLEEKQNTIKSLQDEILSYKDKITR 1449

Query:   438 KNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNE 497
              + +    E   R  + DL   K +++  +  +A ++  L++ + E S  +  LE+    
Sbjct:  1450 NDEKLLSIE---RDNKRDLESLKEQLRAAQESKAKVEEGLKKLEEESSKEKAELEKSKEM 1506

Query:   498 VRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSE-AETVVEQIVDLTHK 556
             +++L+  + S E +L  +M+T+++ DE       +L+ +K    E  + +  +  DL  +
Sbjct:  1507 MKKLESTIESNETELKSSMETIRKSDE-------KLEQSKKSAEEDIKNLQHEKSDLISR 1559

Query:   557 LVISNKN-DESSTSMPTDDMG---LELMQQGLDKGNDNFRLQTKQ---LEIELKFARENL 609
             +  S K+ +E  + +  +      LE ++Q L+   +  R+  ++   L+ +L+     L
Sbjct:  1560 INESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRINAEENTVLKSKLEDIEREL 1619

Query:   610 RMKEMEVLAAKRALTVKDEELKTVLGRLDAXXXXXXXXXXTVEDANDLRKLYALAQERFG 669
             + K+ E+ + +    +    LK +   LD+            E   ++RK + + + +  
Sbjct:  1620 KDKQAEIKSNQEEKELLTSRLKELEQELDSTQQKAQKSEE--ERRAEVRK-FQVEKSQLD 1676

Query:   670 EKSV 673
             EK++
Sbjct:  1677 EKAM 1680

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA;IDA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IDA

GO:0048211 "Golgi vesicle docking" evidence=IDA

GO:0035493 "SNARE complex assembly" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1SQ11 EEA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 213 (80.0 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 94/434 (21%), Positives = 191/434 (44%)

Query:   220 KIDSELKSKAQMLNEANEVVK--KQETEIQSLRKVIQEKE--EELEASXXXXXXXXXXXX 275
             K    L++  QML +  E  K  KQE E  S    +Q+KE   +++A+            
Sbjct:   790 KKSEALENIKQMLTKQEEEKKILKQEVENLSQNAKMQQKELNNKIQAAVTELQKVKMEKE 849

Query:   276 XXXXXXXXRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRV-KKLLSDVRSELVSSQ 334
                        +     D+LK    E  +  ++    + D  +  K L   ++ ++ S+ 
Sbjct:   850 TLVTELSAAKEKLSKVSDSLKNSKSEFEKESQKGKAAILDLEKTCKDLKHQLQVQIESAH 909

Query:   335 KSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKL----RVTE 390
             K     +  +E+++    +  +E+   +  LT    SLK  + E +  +  +    ++TE
Sbjct:   910 KEQNELKNSLEKEKETSHQLKLEINSMQGQLTQAQNSLKQKEKEEQQLQGNINELKQLTE 969

Query:   391 ARNKELERDLSMEKELVEELQNEL-NKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL 449
              + K++E  L  E ++    + EL NK +    QA  E+++ +E++      + + +  L
Sbjct:   970 QKKKQIEA-LQGEVKIAVSQKTELENKLQQQSTQAAQELAAEKEKISVLQNAYEKNQENL 1028

Query:   450 RVKESDLVEAKLEI----QNLKSKQASLQLILEE---KDFELSNARQMLEELNNEVRELK 502
             +  +SD    + E+    Q+LKS +  L L  E+      ++ N  ++++EL      L+
Sbjct:  1029 KQLQSDFYGKESELLATRQDLKSVEEKLSLAQEDLISNRNQIGNQNKLIQELKTARTTLE 1088

Query:   503 MIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVV----EQIVDLTHKLV 558
                + +EEQL +    LQ+  +   + + EL   K K++E E +     ++I  L+ +L 
Sbjct:  1089 QDSAKKEEQLKEQCKALQDVQKEKSLKEKELVNEKSKLAEIEEIKCRQEKEIAKLSEELK 1148

Query:   559 ISNKNDESSTSMPTDDMGLELMQQGLD-KGN-DNFRLQTKQLEIELKFARENLRMKEMEV 616
              S+K +         D    L+QQ L+ +G  D+ +   +Q +   +  +E ++ +E E+
Sbjct:  1149 -SHKQESIKEVTNLKDARQLLIQQKLELQGKVDSLKATLEQEKKNQQMLKEQMKKEEDEL 1207

Query:   617 LAAKRALTVKDEEL 630
                KR    K+ +L
Sbjct:  1208 ---KREFMEKETKL 1218

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	771
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-12
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	6e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	3e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	4e-05
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	8e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-04
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	1e-04
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-04
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	6e-04
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	0.002
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 71.2 bits (175), Expect = 1e-12
 Identities = 68/301 (22%), Positives = 131/301 (43%), Gaps = 4/301 (1%)

Query: 154 RHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLK 213
           + E  E EL    L+L      +E+L+  LKE ++E+  + + L   E +LE++R E+ +
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278

Query: 214 KSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEK 273
             EE  ++  EL + A  ++   +  +     + +L + ++E E +LE   +      E+
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

Query: 274 LKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLED-FRRVKKLLSDVRSELVS 332
           L  +E  LE    E L S +A  +  E     +E   + LE+    ++  ++ +  ++ S
Sbjct: 339 LAELEEKLE-ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397

Query: 333 SQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEAR 392
               +     ++E  E    +   E+EE  K L      LK+ Q E+E    +L   +  
Sbjct: 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEE 455

Query: 393 NKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVK 452
            + LE  L   +E +EE +  L+  +  L Q    + SL+             + LL+ +
Sbjct: 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ 515

Query: 453 E 453
            
Sbjct: 516 S 516

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.9 bits (174), Expect = 2e-12
 Identities = 57/319 (17%), Positives = 145/319 (45%), Gaps = 1/319 (0%)

Query: 233 NEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQ 292
            + N  + ++  EI+ L + I+E EE++           ++L+ +E  LE+   E     
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 293 DALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLG 352
             +  L ++ +R   E     E   ++ K L+++ +E+   ++ L  + +++ E E  + 
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785

Query: 353 KQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN 412
           +   ++E+ K+ L +   +L + + E+     +      R + LER ++  +  +E+L+ 
Sbjct: 786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845

Query: 413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQAS 472
           ++ +    ++    E+  L+E +    +E     N     E  L   + E++ L  +   
Sbjct: 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

Query: 473 LQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQL-VQAMDTLQEKDEHVLILQN 531
           L+    E   EL   R+ L +L   +  L++ + + +E+L  +   TL+E +     +++
Sbjct: 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED 965

Query: 532 ELDGTKLKVSEAETVVEQI 550
           + +  + ++   E  ++++
Sbjct: 966 DEEEARRRLKRLENKIKEL 984

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 70.9 bits (174), Expect = 2e-12
 Identities = 76/351 (21%), Positives = 161/351 (45%), Gaps = 18/351 (5%)

Query: 182  RLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKK 241
             ++E +++I  ++  ++  E  L ++R EL +  EE  ++  EL+  ++ ++   + + +
Sbjct: 678  EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737

Query: 242  QETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEE 301
             E E++ L + I +  +EL    A  +  EE+L+  E  L +   E     + L+   E+
Sbjct: 738  LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI----EELEAQIEQ 793

Query: 302  ASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQ 361
                ++   + L++ R    LL++  + L    +SL       E +   L +Q+ EL E 
Sbjct: 794  LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853

Query: 362  KKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSL 421
             +SL + +  L++   E+ESE   L         LE  L++ +  +EEL  EL + +   
Sbjct: 854  IESLAAEIEELEELIEELESELEAL---LNERASLEEALALLRSELEELSEELRELESKR 910

Query: 422  QQAIDEVSSLQEELGRKNTEFGETE-NLLRVKESDLVEAKLEIQNLKSKQASLQLILEEK 480
             +   E+  L+E+L +        E  +  ++E    E  L ++  ++ +  ++   EE 
Sbjct: 911  SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970

Query: 481  DFELSNARQMLEELNN----------EVRELKMIMSSREEQLVQAMDTLQE 521
               L      ++EL            E++E    +++++E L +A +TL+E
Sbjct: 971  RRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 70.5 bits (173), Expect = 2e-12
 Identities = 78/303 (25%), Positives = 140/303 (46%), Gaps = 14/303 (4%)

Query: 198 SLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKE 257
           S  +      + EL +  EE A+++++L+   + L      ++  E  ++ LR+ ++E E
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 258 EELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFR 317
            +LE         EE+L+ +++ LE            L++  EE    +EE  + LE+  
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLE-----------ELEEELEELEEELEELQERLEELE 764

Query: 318 RVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQV 377
              + L +  ++L    + L   R+ ++E+   L ++L E E +  +L      L+  + 
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALER---ELESLEQ 821

Query: 378 EVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGR 437
             E    ++   E   +ELE  L   +E +EEL+ EL + K  L++   E   L++EL  
Sbjct: 822 RRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881

Query: 438 KNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNE 497
              E  E E  LR  ES+L E K EI+ L+ +   L+  LE  + EL    + LEE   +
Sbjct: 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED 941

Query: 498 VRE 500
             E
Sbjct: 942 TLE 944

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 69.4 bits (170), Expect = 4e-12
 Identities = 103/461 (22%), Positives = 205/461 (44%), Gaps = 13/461 (2%)

Query: 106 LQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKL---EEEL 162
            +  L  L++  E+LE+   R+     E+   +EEL      ++      EKL   EE L
Sbjct: 272 REEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERL 331

Query: 163 GQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKID 222
            +   KL      +E+L     E  + +      L  +  ELEK   + L++ ++  +  
Sbjct: 332 EKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAI 391

Query: 223 SELKSK----AQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVE 278
            ELK +    +  L E  E +++ E E++ L + ++E EEE++         E K  ++ 
Sbjct: 392 QELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIA 451

Query: 279 ANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLA 338
                     +  Q+  ++  +E     E   + LE+    +K  +++R E+   +K L 
Sbjct: 452 ELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELR 511

Query: 339 SSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDA--QVEVESERVKLRVTEARNKEL 396
              +++ E   L      ELEE+ + L + +  L++   +++++  + +LR  E R +EL
Sbjct: 512 ELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQEL 571

Query: 397 ERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDL 456
           +  L  E  L+   + EL + +  L++   ++  L+E L +           L   E++L
Sbjct: 572 KELLE-ELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEEL--LQSLELSEAENEL 628

Query: 457 VEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAM 516
            EA+ E+++   K      + E     L    + +EEL  E+R         EEQL + +
Sbjct: 629 EEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQR-IENEEQLEEKL 687

Query: 517 DTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKL 557
           + L++ +E +  L+ EL+    K+ E E ++E++     +L
Sbjct: 688 EELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.4 bits (170), Expect = 5e-12
 Identities = 90/356 (25%), Positives = 167/356 (46%), Gaps = 34/356 (9%)

Query: 98  NLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEK 157
           NLE LE  L+ +   L+K E   E AER   L        K EL   E  + +A  + ++
Sbjct: 187 NLERLEDLLEELEKQLEKLERQAEKAERYQEL--------KAELRELELALLLA--KLKE 236

Query: 158 LEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEE 217
           L +EL +   +L      +E+L+  L+E ++EI  ++S L     ELE+++ ELL+  EE
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296

Query: 218 AAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVV 277
             +++ E+    + L E    +++ E  ++ L++ I+  +EELE    L +  E+ L  +
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356

Query: 278 EANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSL 337
           E                 +   E   +      +  E F  +++ L+++ +EL   +  L
Sbjct: 357 E-----------------EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 338 ASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELE 397
              ++++E  E  L +    LE+ K+        LK+ + E+E  + +L       +ELE
Sbjct: 400 EELKREIESLEERLERLSERLEDLKE-------ELKELEAELEELQTELEELNEELEELE 452

Query: 398 RDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKE 453
             L   ++ ++EL+ EL + +  LQ+   E+SSL+  L R   E   ++ +  V E
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.0 bits (169), Expect = 7e-12
 Identities = 83/354 (23%), Positives = 159/354 (44%), Gaps = 23/354 (6%)

Query: 113 LKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQ 172
           LK+ EE+L + E ++     EL   K EL   E  ++    + E+LE +L +   +L + 
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728

Query: 173 ARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQML 232
              +E L+ RL+E ++E+  ++  L   +  LE++  EL    E  AK+  E++   +  
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788

Query: 233 NEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQ 292
               E +++ E E++   + +   E ELE+    R+  E+++      LE+   E     
Sbjct: 789 QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI----EELEEEIEELEEKL 844

Query: 293 DALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLG 352
           D L++  EE  + +EE  + LE+    K+ L D   EL   ++      +++ E E    
Sbjct: 845 DELEEELEELEKELEELKEELEELEAEKEELED---ELKELEEEKEELEEELRELES--- 898

Query: 353 KQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN 412
            +L EL+E+ + L   +  L+     +E E  +L        E   +  +E+E+ E L+ 
Sbjct: 899 -ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI-ERLEE 956

Query: 413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNL 466
           E+        +AI+E   ++E      ++             DL EAK ++  +
Sbjct: 957 EIEALGPVNLRAIEEYEEVEERYEELKSQR-----------EDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.2 bits (167), Expect = 1e-11
 Identities = 73/361 (20%), Positives = 147/361 (40%), Gaps = 20/361 (5%)

Query: 141  LLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLK 200
            +L R REI+    + E+LEE++ +    L    + +E+L+  L++  +E+  +   +S  
Sbjct: 672  ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731

Query: 201  ELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEEL 260
              +L ++ +E+ +  E  A++  EL      + E  E +++ E E+      I+E E ++
Sbjct: 732  RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 261  EASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVK 320
            E      K   E L  + A L        L  +    L E           T      ++
Sbjct: 792  EQLKEELKALREALDELRAELT-------LLNEEAANLRERLESLERRIAATERRLEDLE 844

Query: 321  KLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVE 380
            + + ++  ++ S    +    + +EE E     +L  L  ++ SL   +  L+    E+ 
Sbjct: 845  EQIEELSEDIESLAAEIEELEELIEELE----SELEALLNERASLEEALALLRSELEELS 900

Query: 381  SERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNT 440
             E   LR  E++  EL R+L   +E + +L+  L   +  +    + +S           
Sbjct: 901  EE---LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS------L 951

Query: 441  EFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRE 500
               E E L    E D  EA+  ++ L++K   L  +      E    ++  + L  +  +
Sbjct: 952  TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKED 1011

Query: 501  L 501
            L
Sbjct: 1012 L 1012

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 119/609 (19%), Positives = 241/609 (39%), Gaps = 52/609 (8%)

Query: 104 SDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRR----EREIDVACSRHEKLE 159
           ++L+  L  L+ + E+++        E  +     E+L R     +RE+D      ++L 
Sbjct: 360 AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS 419

Query: 160 EELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAA 219
           EEL   N  +      I +L+   +++  EI   +  L     +L K   EL    EE  
Sbjct: 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479

Query: 220 KIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVA----LRKVEEEKLK 275
           +++ EL    + L EA    +  E  ++  R V +  +  ++        L  V E    
Sbjct: 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYAT 539

Query: 276 VVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRS------- 328
            +E     R    ++  DA+ K A E  +R +    T     +++    D+         
Sbjct: 540 AIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVI 599

Query: 329 ----ELVSSQKSLASSRKQ----------MEEQEHLLGK-QLVELE----EQKKSLTSYM 369
               +LV        + K           +E    L+GK ++V LE    E+  ++T   
Sbjct: 600 GFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGS 659

Query: 370 TSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVS 429
            + +   +   SE  +L+    R + L+R+LS  +  +  ++N L++    L  A  ++ 
Sbjct: 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG 719

Query: 430 SLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQ 489
            +++E+ +   E  + +  L   E DL   + EI+N+KS+   L+  +EE + +L    +
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779

Query: 490 MLEEL------------NNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTK 537
            L +L              E+ +L+  +S  E +L +    L         L+ E+   +
Sbjct: 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 538 LKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQ 597
            +  + +   EQI  +  ++   N   E    +  +   LE   + L+    + + +  +
Sbjct: 840 EQRIDLK---EQIKSIEKEIENLNGKKE---ELEEELEELEAALRDLESRLGDLKKERDE 893

Query: 598 LEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDL 657
           LE +L+     +   E ++   ++ L+    +L+ +   L   E    + EE  E+   L
Sbjct: 894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL 953

Query: 658 RKLYALAQE 666
             + A  Q 
Sbjct: 954 EDVQAELQR 962

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 67.0 bits (164), Expect = 3e-11
 Identities = 64/308 (20%), Positives = 138/308 (44%), Gaps = 5/308 (1%)

Query: 133 ELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAA 192
           ++   +E++   E+ +       E+LEEEL Q   +L   +R I  L+  L   + E+  
Sbjct: 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744

Query: 193 MQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKV 252
           ++  ++    EL ++ +E+ +  E   + + EL      + E    +++ + E+++LR+ 
Sbjct: 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804

Query: 253 IQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDT 312
           + E   EL         E   L+    +LE+R        + L++  EE S  +E     
Sbjct: 805 LDELRAELTLL----NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860

Query: 313 LEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSL 372
           +E+   + + L      L++ + SL  +   +  +   L ++L ELE ++  L   +  L
Sbjct: 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920

Query: 373 KDAQVEVESERVKLRVTEARNKE-LERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSL 431
           ++   ++E     L V     +E L  + S+  E  E L+N++  ++   ++ +  + + 
Sbjct: 921 REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980

Query: 432 QEELGRKN 439
            +ELG  N
Sbjct: 981 IKELGPVN 988

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 97/369 (26%), Positives = 158/369 (42%), Gaps = 37/369 (10%)

Query: 132 SELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIA 191
           S+    KEE  R+    +    R E L EEL +   KL  QA   E  +  LK       
Sbjct: 168 SKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ-ELKAE----- 221

Query: 192 AMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRK 251
                  L+ELEL  + ++L +  +E  +++ EL    + L E  E +++ E EI+ L+ 
Sbjct: 222 -------LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274

Query: 252 VIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETND 311
            ++E  EELE         +E+L  ++  +E+   E  L ++ L++L  E     E   +
Sbjct: 275 ELEELREELEE-------LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEE 327

Query: 312 TLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTS 371
             E    +K+ L +  + L   ++ LA   +  EE E  L   L ELEE  ++L   +  
Sbjct: 328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387

Query: 372 LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSL 431
           L                 EA   E+  +L   K  +E L+  L +    L+   +E+  L
Sbjct: 388 L-----------------EAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430

Query: 432 QEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQML 491
           + EL    TE  E    L   E  L E +  ++ L+ + A LQ  L+  + ELS+    L
Sbjct: 431 EAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Query: 492 EELNNEVRE 500
           + L  E R 
Sbjct: 491 DRLEAEQRA 499

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 64.3 bits (157), Expect = 2e-10
 Identities = 132/576 (22%), Positives = 248/576 (43%), Gaps = 71/576 (12%)

Query: 113 LKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQ 172
           +K+KE++LE+  R +    SEL   +EEL + E+E+       E+L+EE+ +   +L S 
Sbjct: 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESL 250

Query: 173 ARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQML 232
                 L+ +++E ++ I   +    ++ELE +    + LK+  E     SE   +    
Sbjct: 251 EGSKRKLEEKIRELEERIE--ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEE---Y 305

Query: 233 NEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQ 292
            +    ++K+ + ++     I+E+ +ELE      +  ++KLK +E  LE+      L +
Sbjct: 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE 365

Query: 293 DALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLG 352
           +A  K  E    +   T  T E   +  + L   + E+      + +   +++++   L 
Sbjct: 366 EAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELK 425

Query: 353 KQLVEL----------------EEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKEL 396
           K + EL                E +K+ L  Y   LK  + E++    K R      +EL
Sbjct: 426 KAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485

Query: 397 ERDLSMEKEL---------VEELQNELNK-EKYSLQQAIDEVSSLQEELGRKNTEFGETE 446
           E+ L  E EL         ++EL+ +L K     L++  +E   L+E+L +   E    +
Sbjct: 486 EKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLK 545

Query: 447 NLLRVK---ESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKM 503
             L      +  L E + ++  L+ + A L   LEE  FE       +EEL   ++EL+ 
Sbjct: 546 KELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE------SVEELEERLKELEP 599

Query: 504 IMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKN 563
              +   +L  A   L+ +++ +  L+ ELD    +++E E  +E++             
Sbjct: 600 FY-NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE-------- 650

Query: 564 DESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL 623
                         EL ++  ++  +  R +  +L  EL   R  L   E      K+ L
Sbjct: 651 --------------ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696

Query: 624 TVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRK 659
               E+LK  L   +  +KEL+KLE+ +E   +LR+
Sbjct: 697 ----EKLKEELEEREKAKKELEKLEKALERVEELRE 728

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 76/322 (23%), Positives = 152/322 (47%), Gaps = 22/322 (6%)

Query: 188 QEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQ 247
           +   A +  L   E EL ++ ++L K  EE   + +EL+S   +L E    +++ E +++
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719

Query: 248 SLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRME 307
            L++ +   EEELE   +  +  EE+L+ +E  LE+        ++ L+ L E  ++  E
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKE 779

Query: 308 ETNDTLEDFRRVKKLLSDVRSELVSSQK---SLASSRKQMEEQEHLLGKQLVELEEQKKS 364
           E  +  E  + +++ L ++  EL  +++   +L    + +E++   L +++ ELEE+ + 
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 365 LTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA 424
           L   +  L++   E+E E  +L                 KE +EEL+ E  + +  L++ 
Sbjct: 840 LEEKLDELEEELEELEKELEEL-----------------KEELEELEAEKEELEDELKEL 882

Query: 425 IDEVSSLQEELGRKNTEFGETENLLRVKESDLV--EAKLEIQNLKSKQASLQLILEEKDF 482
            +E   L+EEL    +E  E +  +      L   EAKLE   ++  +   +L  E +D 
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT 942

Query: 483 ELSNARQMLEELNNEVRELKMI 504
             +   + +E L  E+  L  +
Sbjct: 943 LETELEREIERLEEEIEALGPV 964

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 70/336 (20%), Positives = 153/336 (45%), Gaps = 6/336 (1%)

Query: 98   NLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEK 157
             +  LE  L  +   L++ EE+LE   + +     +++  +++L R E E++    R  +
Sbjct: 692  KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751

Query: 158  LEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEE 217
            L +EL +   ++      +E+ +  L E + EI  +++ +   + EL+ +R  L +   E
Sbjct: 752  LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811

Query: 218  AAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVV 277
               ++ E  +  + L      +   E  ++ L + I+E  E++E+  A  +  EE ++ +
Sbjct: 812  LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871

Query: 278  EANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSL 337
            E+ LE    E    ++AL  L  E     EE  +       +++ L ++R +L   +  L
Sbjct: 872  ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931

Query: 338  ASSRKQMEE-QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKL----RVTEAR 392
                 +++  QE L  +  + LEE +          ++A+  ++    K+     V  A 
Sbjct: 932  EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAA 991

Query: 393  NKELERDLSMEKELVEELQNELNKEKYSLQQAIDEV 428
             +E E +L    + +   + +L + K +L++AI+E+
Sbjct: 992  IEEYE-ELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 83/339 (24%), Positives = 159/339 (46%), Gaps = 6/339 (1%)

Query: 98   NLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEK 157
             LE LE +L+++   L+  E+ LE+  R++     +L   K EL   E E++   SR E+
Sbjct: 682  QLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEE 741

Query: 158  LEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEE 217
            LEEEL +   +L      +E+L+  L+  ++ +A ++  +   E + + ++ EL +  EE
Sbjct: 742  LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEE 801

Query: 218  AAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVV 277
              + +  L +  + L    +  ++ E EI+ L + I+E EE+L+      +  E++L+ +
Sbjct: 802  LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861

Query: 278  EANLEKRTMEWLLSQDALKKL---AEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQ 334
            +  LE+   E    +D LK+L    EE    + E    L + +   + L +   EL +  
Sbjct: 862  KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921

Query: 335  KSLASSRKQMEE--QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEAR 392
            + L     ++EE  +E        ELE + + L   + +L    +    E  ++      
Sbjct: 922  ERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEE 981

Query: 393  NKELERDLSMEKELVEELQNELNKEKYS-LQQAIDEVSS 430
             K    DL   KE + E+  EL+KEK    ++  D+++ 
Sbjct: 982  LKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINE 1020

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 5e-10
 Identities = 84/387 (21%), Positives = 162/387 (41%), Gaps = 20/387 (5%)

Query: 167 LKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELK 226
            KL+ +A  +   K R +E ++++   +  L   E  LE++  +L K   +A K +   +
Sbjct: 158 RKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE 217

Query: 227 SKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTM 286
            KA+           +E E+  L   ++E  +ELE         EE+L+ ++  LE+   
Sbjct: 218 LKAE----------LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEK 267

Query: 287 EWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEE 346
           E    +  L++L EE     EE          +K+ + ++  E+   ++ L     ++EE
Sbjct: 268 EIEELKSELEELREELEELQEE-------LLELKEEIEELEGEISLLRERLEELENELEE 320

Query: 347 QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKEL 406
            E  L +   ++E  K+ L    T L++ +  +          E +   L  +L   +EL
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL---EEL 377

Query: 407 VEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNL 466
            E L+ EL + +  L +  +E+  L+ E+             L   + +L E + E++ L
Sbjct: 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL 437

Query: 467 KSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHV 526
           +++   L   LEE + +L   R  L+EL  E+ EL+  +   E++L      L   +   
Sbjct: 438 QTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQ 497

Query: 527 LILQNELDGTKLKVSEAETVVEQIVDL 553
              Q      +   S    V   + +L
Sbjct: 498 RASQGVRAVLEALESGLPGVYGPVAEL 524

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 62.0 bits (151), Expect = 9e-10
 Identities = 68/350 (19%), Positives = 139/350 (39%), Gaps = 20/350 (5%)

Query: 99   LEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKL 158
            L+ L   L+ +   L   + +L   E R+     EL+ A  ++   E+EI+      EKL
Sbjct: 676  LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735

Query: 159  EEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEA 218
            +E L +    L S  + IE++K  LKE +  I  ++  L   E  L  + + L       
Sbjct: 736  KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS------ 789

Query: 219  AKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVE 278
                S +      L++  E V + E  ++ + + +     E E      +  +E+   ++
Sbjct: 790  ---HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846

Query: 279  ANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLA 338
              ++    E        ++L EE         D       +KK   ++ ++L   ++ + 
Sbjct: 847  EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906

Query: 339  SSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELER 398
                Q+E++   L +   +LE  ++ L+      K    E+  E + L   +A  + +E 
Sbjct: 907  ELEAQIEKKRKRLSELKAKLEALEEELSEI-EDPKGEDEEIPEEELSLEDVQAELQRVEE 965

Query: 399  DLSM----------EKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRK 438
            ++            E E V +  +EL +++  L++    +    EE  +K
Sbjct: 966  EIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 66/287 (22%), Positives = 133/287 (46%), Gaps = 12/287 (4%)

Query: 243 ETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDA---LKKLA 299
           E E+  L   ++E  EELE      K  EE+L+ + A L++   +    +     L++  
Sbjct: 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283

Query: 300 EEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELE 359
           EE  + +    + +    + K++L +  + L    + L +  +++E +   L ++L ELE
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343

Query: 360 EQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKY 419
           E+ + L   + SL+    E+E    +L   E+R +ELE  L   +  V +L+ ++     
Sbjct: 344 EKLEELKEELESLEA---ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400

Query: 420 SLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEE 479
            +++    +  L++   R   E    E L +++E++L E + E++ L+ +   LQ  LE 
Sbjct: 401 EIERLEARLERLEDRRERLQQE--IEELLKKLEEAELKELQAELEELEEELEELQEELER 458

Query: 480 KDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHV 526
            +  L   R+ LEE    +   +        QL   +D+L+   E++
Sbjct: 459 LEEALEELREELEEAEQALDAAE----RELAQLQARLDSLERLQENL 501

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 59.8 bits (144), Expect = 5e-09
 Identities = 88/447 (19%), Positives = 186/447 (41%), Gaps = 35/447 (7%)

Query: 111  AALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLV 170
            A   KK ++ + AE +   + ++  +  EEL + E   +   +   K  EE     L+  
Sbjct: 1530 AEEAKKADEAKKAEEK---KKADELKKAEELKKAE---EKKKAEEAKKAEEDKNMALRKA 1583

Query: 171  SQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSK-A 229
             +A+  E+ ++    +  E      A   K+ E  K+++E LKK+EE  K   +LK K A
Sbjct: 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643

Query: 230  QMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWL 289
            +   +A E+ K +E       +  ++ EE+ + +   +K EE++ K  EA   K+  E  
Sbjct: 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA--LKKEAEEA 1701

Query: 290  LSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEH 349
               + LKK   E  ++ EE     E+  ++K                 A   K+  E++ 
Sbjct: 1702 KKAEELKKKEAEEKKKAEELKKA-EEENKIK-----------------AEEAKKEAEEDK 1743

Query: 350  LLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEE 409
               ++  + EE+KK +       +    E+  E+  +   E   ++ +R + ++K++ + 
Sbjct: 1744 KKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803

Query: 410  LQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK 469
              N  N     + +   E + +  +   K  E    + +   K   L EA    +  K  
Sbjct: 1804 FDNFAN-----IIEGGKEGNLVIND--SKEMEDSAIKEVADSKNMQLEEAD-AFEKHKFN 1855

Query: 470  QASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLIL 529
            + +       K+ + +  + + E+   E+ E   I    ++ + + +       ++  I+
Sbjct: 1856 KNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDII 1915

Query: 530  QNELDGTKLKVSEAETVVEQIVDLTHK 556
             ++LD  +    +AE   E+I+ ++ K
Sbjct: 1916 DDKLDKDEYIKRDAEETREEIIKISKK 1942

Length = 2084

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 59.3 bits (144), Expect = 6e-09
 Identities = 71/361 (19%), Positives = 146/361 (40%), Gaps = 37/361 (10%)

Query: 174 RHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLN 233
           R  E     L+E ++ I  +   +  K  +LE++R E  K  E    +  E +       
Sbjct: 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-ERYQALLKEKREYEGYEL 228

Query: 234 EANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQD 293
                 +  E + +++ + +   EEELE           KL    + LEKR  E      
Sbjct: 229 LKE--KEALERQKEAIERQLASLEEELE-----------KLTEEISELEKRLEE------ 269

Query: 294 ALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGK 353
             + L E   +  +      E+  RVK+ + ++ +E+ S ++S+A   +++E+ E  L K
Sbjct: 270 IEQLLEELNKKIKDLGE---EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326

Query: 354 QLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNE 413
              E+++    +      +++ +   +    +    +   ++L  +L    +   E ++E
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 414 LNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASL 473
           L   +  L++   E++ L+ EL R   E       L+    +L +    I  +++K   L
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEE-------LQRLSEELADLNAAIAGIEAKINEL 439

Query: 474 QLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNEL 533
           +   E+K  E+      LE       +L   +S  E++L    +     ++ +  LQ EL
Sbjct: 440 EEEKEDKALEIKKQEWKLE-------QLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492

Query: 534 D 534
            
Sbjct: 493 A 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 132/573 (23%), Positives = 243/573 (42%), Gaps = 29/573 (5%)

Query: 98  NLEILESDLQAVLAALKKKEEDLEDAERRVCL-EHSELNRAKEELLRREREIDVACSRHE 156
           ++E L   L+  L  LKK EE  E+ E      E   L     EL   +  ++   +R  
Sbjct: 200 DIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLL 259

Query: 157 KLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSE 216
           ++E    ++      + R +E L   L+E+ + +  ++  +     ELE+    L    E
Sbjct: 260 EIESLELEALKIREEELRELERLLEELEEKIERLEELEREIE----ELEEELEGLRALLE 315

Query: 217 EAAKIDSELKSKAQMLNEANEVVKKQETEIQSLR-------KVIQEKEEELEASVALRKV 269
           E  ++  +LKS  + L +  E ++K E+E++ L        K+++E+ +ELE  +   + 
Sbjct: 316 ELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEK 375

Query: 270 EEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSE 329
           E EK       LE+   E       L    EE    +EE    LE+  R  + L +   +
Sbjct: 376 ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKK 435

Query: 330 LVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVT 389
           L      L S    + E      K  V  +E  +     +  L + ++E   E +     
Sbjct: 436 LEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKE 495

Query: 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDE-VSSLQEELGRKNTEFGETENL 448
           EA  +E   +L  E   +EE   EL + + +L++ ++E +  L+  L        + +  
Sbjct: 496 EAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ-- 553

Query: 449 LRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSR 508
           L+  + +L + +  +Q LK     L+L+   K+ EL   R+ L+EL  +++EL+  +S  
Sbjct: 554 LQQLKEELRQLEDRLQELKELLEELRLLRTRKE-ELEELRERLKELKKKLKELEERLSQL 612

Query: 509 EEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESST 568
           EE L     +  E +        EL+    K++    + E +     +L    +  E+  
Sbjct: 613 EELLQSLELSEAENELEEAE--EELESELEKLNLQAELEELLQAALEELEEKVEELEAEI 670

Query: 569 SMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDE 628
                    EL +   ++  +    + +QLE EL+  RE L     E+L     +    E
Sbjct: 671 RR-------ELQRIENEEQLEEKLEELEQLEEELEQLREELE----ELLKKLGEIEQLIE 719

Query: 629 ELKTVLGRLDAKEKELKKLEETVEDANDLRKLY 661
           EL++    L+  +KEL+KLE+ +E   +LR+  
Sbjct: 720 ELESRKAELEELKKELEKLEKALELLEELREKL 752

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 2e-08
 Identities = 82/372 (22%), Positives = 170/372 (45%), Gaps = 29/372 (7%)

Query: 300 EEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELE 359
           +E  R++E T + L+        L D+ +EL    KSL    ++ E        +  EL+
Sbjct: 175 KETERKLERTRENLDR-------LEDILNELERQLKSLERQAEKAE--------RYKELK 219

Query: 360 EQKKSL--TSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKE 417
            + + L     +  L++ + E+E  + +L+  E   +EL  +L   +E +EEL+ E+++ 
Sbjct: 220 AELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL 279

Query: 418 KYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLIL 477
           +  +++   E+ +L  E+ R   +       L   E  L E + +++ L+SK   L   L
Sbjct: 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339

Query: 478 EEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTK 537
            E + +L   ++ LE L  E+ EL+  +   E +L +  + L+     V  L+ ++    
Sbjct: 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN 399

Query: 538 LKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQ 597
            ++   E  +E++ D   +L    + +        ++  L+ +Q  L++  +    + ++
Sbjct: 400 NEIERLEARLERLEDRRERL----QQEIEELLKKLEEAELKELQAELEELEE----ELEE 451

Query: 598 LEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDL 657
           L+ EL+   E L     E+  A++AL   + EL  +  RLD+    L++L+E +E  ++ 
Sbjct: 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS----LERLQENLEGFSEG 507

Query: 658 RKLYALAQERFG 669
            K     Q    
Sbjct: 508 VKALLKNQSGLS 519

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 74/347 (21%), Positives = 142/347 (40%), Gaps = 32/347 (9%)

Query: 96  GLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRH 155
             N+E L+  +      L++   + E AER     +  L + K     RE E        
Sbjct: 183 EENIERLDLIIDEKRQQLERLRREREKAER-----YQALLKEK-----REYEGYELLKEK 232

Query: 156 EKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKM-------- 207
           E LE +      +L S    +E L   + E ++ +  ++  L     +++ +        
Sbjct: 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV 292

Query: 208 RSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALR 267
           + ++ +   E A ++  +  K + L +A E + K E EI  L   I+E E E+E      
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE----E 348

Query: 268 KVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVR 327
           +   +KL    A L++   +       L+   EE  +   ET D L+D+R   + L    
Sbjct: 349 RKRRDKLTEEYAELKEELED-------LRAELEEVDKEFAETRDELKDYREKLEKLKREI 401

Query: 328 SELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLR 387
           +EL      L    +++ E+   L   +  +E +   L       +D  +E++ +  KL 
Sbjct: 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE---EEKEDKALEIKKQEWKLE 458

Query: 388 VTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE 434
              A   + E++L   KE  + ++ EL+K +  L +A  +  + +E 
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.9 bits (135), Expect = 8e-08
 Identities = 139/623 (22%), Positives = 255/623 (40%), Gaps = 40/623 (6%)

Query: 102 LESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEE 161
           LE  L A+L  L++  E L +    +  E +E+    EEL   +REI+    R E+L E 
Sbjct: 363 LEEKLSALLEELEELFEALREELAELEAELAEIRNELEEL---KREIESLEERLERLSER 419

Query: 162 LGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKI 221
           L     +L      +E+L+  L+E ++E+  ++  L      L+++  EL +  EE  ++
Sbjct: 420 LEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479

Query: 222 DSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVA----LRKVEEEKLKVV 277
           + EL S    L+      + ++   Q +R V++  E  L         L KV+E+    +
Sbjct: 480 EKELSSLEARLDRL----EAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETAL 535

Query: 278 EANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSL 337
           EA L  R    ++  + + K A E  +             R   L  D         K L
Sbjct: 536 EAALGNRLQAVVVENEEVAKKAIEFLKEN--------KAGRATFLPLDR-------IKPL 580

Query: 338 ASSRKQMEEQEHLLGKQLVELEEQKKSLTSYM-------TSLKDAQVEVESERVKLRVTE 390
            S +         L   L++ + + +    ++         L+ A+      R+K R+  
Sbjct: 581 RSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRIVT 640

Query: 391 ARNKELERDLSM-----EKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGET 445
                +E   S+      K      + EL + +  L +   ++  L+EEL     E    
Sbjct: 641 LDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSL 700

Query: 446 ENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIM 505
           E+LL      L E + +++ LK + A+L+  LE+    L    + LEEL  E+ EL+  +
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 506 SSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDE 565
              EE+L    + L +  E +  L+ +    + ++ E E  +E+       L    ++ E
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 566 SSTSMPTDDMG-LELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALT 624
                   ++  LE   + L++  D    + ++LE EL+  +E L   E E    +  L 
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 625 VKDEELKTVLGRLDAKEKELKKLEETVEDAND-LRKLYALAQERFGEKSVGDLAIERLQL 683
             +EE + +   L   E EL +L+E +E   + L +L A  +    E    +  +E    
Sbjct: 881 ELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYE 940

Query: 684 EAAQLEVEAATSALQKLTEMSGE 706
           +  + E+E     L++  E  G 
Sbjct: 941 DTLETELEREIERLEEEIEALGP 963

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 1e-07
 Identities = 70/302 (23%), Positives = 140/302 (46%), Gaps = 6/302 (1%)

Query: 351 LGKQLVELEEQKKSLTSYMTSLKDAQ-VEVESERVKLRVTEARNKELERDLSMEKELVEE 409
           L KQL +LE Q +    Y     + + +E+     KL+      +ELE +LS  +E +EE
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 410 LQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK 469
           LQ EL + +  +++   E+  L+EEL     E  E +  +   E ++   +  ++ L+++
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 470 QASLQLILEEKDFELSNARQMLEELNNEVRELKM---IMSSREEQLVQAMDTL-QEKDEH 525
              L+  LEE   ++   ++ LEE    + EL+     +   +E+L + +  L +E +E 
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377

Query: 526 VLILQNELDGTKLKVSEAETVVEQIVD-LTHKLVISNKNDESSTSMPTDDMGLELMQQGL 584
              L+ EL   + +++E    +E++   +        +  E    +  +   LE   + L
Sbjct: 378 FEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEEL 437

Query: 585 DKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKEL 644
               +    + ++LE +L+  R+ L+  E E+   +  L   ++EL ++  RLD  E E 
Sbjct: 438 QTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQ 497

Query: 645 KK 646
           + 
Sbjct: 498 RA 499

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 55.1 bits (132), Expect = 1e-07
 Identities = 114/567 (20%), Positives = 214/567 (37%), Gaps = 41/567 (7%)

Query: 112  ALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVS 171
            A+KK EE  +DAE     E    N    +                K EE      LK   
Sbjct: 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE 1287

Query: 172  QARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQM 231
            + +  ++ K   +++  + A        K+ E  K   E  KK+EEA K     K KA+ 
Sbjct: 1288 EKKKADEAKKAEEKKKADEAK-------KKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340

Query: 232  LNEANEVVKKQETEIQSLRKVIQEKEE--ELEASVALRKVEEEKLKVVEA----NLEKRT 285
              +A E  K +        +  +EK E  E +   A +K +  K K  E       +K+ 
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400

Query: 286  MEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQME 345
             E     D LKK A  A ++ +E     E+ ++  +          + +    +   +  
Sbjct: 1401 EEDKKKADELKK-AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Query: 346  EQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKE 405
            E+     ++  + +E KK       + K  + + ++E  K +  EA+     +  + E +
Sbjct: 1460 EEAKKKAEEAKKADEAKKKAEE---AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516

Query: 406  LVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKL---E 462
              EE +     +K    +  DE    +E+  +K  E  + E L + +E    E      E
Sbjct: 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEK--KKADELKKAEELKKAEEKKKAEEAKKAEE 1574

Query: 463  IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEK 522
             +N+  ++A      EE   E    +   EE   +  E K      EE  ++A +  + +
Sbjct: 1575 DKNMALRKAEEAKKAEEARIE-EVMKLYEEEKKMKAEEAK----KAEEAKIKAEELKKAE 1629

Query: 523  DEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQ 582
            +E   + Q +    + K    E    +  +       + K +E                +
Sbjct: 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK-----------AE 1678

Query: 583  GLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAK-- 640
               K  ++ +   + L+ E + A++   +K+ E    K+A  +K  E +  +   +AK  
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738

Query: 641  -EKELKKLEETVEDANDLRKLYALAQE 666
             E++ KK EE  +D  + +K+  L +E
Sbjct: 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKE 1765

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 48/208 (23%), Positives = 103/208 (49%), Gaps = 5/208 (2%)

Query: 102 LESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEE 161
           LE +++ +   L     ++   E++  +    L   + +L   E +++   S+ ++L EE
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338

Query: 162 LGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKI 221
           L +   KL      +E L+  L+E + E+  ++S L   E +LE +RS++ +   + A +
Sbjct: 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398

Query: 222 DSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKE-EELEASVALRKVEEEKLK----V 276
           ++E++     L    +  ++ + EI+ L K ++E E +EL+A +   + E E+L+     
Sbjct: 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER 458

Query: 277 VEANLEKRTMEWLLSQDALKKLAEEASR 304
           +E  LE+   E   ++ AL     E ++
Sbjct: 459 LEEALEELREELEEAEQALDAAERELAQ 486

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 40/219 (18%), Positives = 85/219 (38%), Gaps = 21/219 (9%)

Query: 220 KIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEA 279
           +I  E+ +  + + E  +   K E +++SL   I   E +L  +    K   +++  + A
Sbjct: 42  QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101

Query: 280 NLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLAS 339
            L             L+    E  RR+ E    L+   R           LVS + +  S
Sbjct: 102 RLNA-----------LEVQEREQRRRLAEQLAALQRSGRNPPPA-----LLVSPEDAQRS 145

Query: 340 SRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERD 399
            R  +       G       E+  +L + +  L   + E+ +E+ +L    +  +  +  
Sbjct: 146 VRLAI-----YYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAK 200

Query: 400 LSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRK 438
           L+   E  ++   +LN E  + Q+ ++E+ + +  L  +
Sbjct: 201 LAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNE 239

Length = 420

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 5e-07
 Identities = 54/241 (22%), Positives = 113/241 (46%), Gaps = 4/241 (1%)

Query: 85  RDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRR 144
           +D G  + ++    +  LE+++ ++  ++ +KE +LEDAE R+    +E+++   E+   
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341

Query: 145 EREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELEL 204
           EREI+    R +KL EE  +   +L      +E++     E   E+   +  L   + E+
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401

Query: 205 EKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASV 264
            +++ EL +  EE  ++  EL      +      + + E E +     I+++E +LE   
Sbjct: 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461

Query: 265 ALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLS 324
           A     E++L  ++   ++  +E  LS+   +    EA  R  E  + +   R V+++L 
Sbjct: 462 ADLSKYEQELYDLKEEYDR--VEKELSKLQRELAEAEAQARASE--ERVRGGRAVEEVLK 517

Query: 325 D 325
            
Sbjct: 518 A 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 77/345 (22%), Positives = 152/345 (44%), Gaps = 7/345 (2%)

Query: 318 RVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQV 377
           R K+     + EL   ++ LA    Q+E+ E  L     EL   +  L      L++ + 
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 378 EVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGR 437
           ++E  + +L   E   ++L+  L   +E +EEL+ EL + +  L++  +E+ SL+E L +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 438 KNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNE 497
              E  E E   +  + +L E + E++  + +  +L+  LE  +       Q +EEL  E
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEE 836

Query: 498 VRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKL 557
           + EL+  +   EE+L +    L+E  E +  L+ E +  + ++ E E   E++ +   +L
Sbjct: 837 IEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL 896

Query: 558 VISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVL 617
                  +       +   LE ++  L++         ++LE E +   E    +E+E L
Sbjct: 897 ESELAELKEEIEKLRER--LEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954

Query: 618 AAKRALTVK-----DEELKTVLGRLDAKEKELKKLEETVEDANDL 657
             +            EE + V  R +  + + + LEE  E   ++
Sbjct: 955 EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 114/505 (22%), Positives = 224/505 (44%), Gaps = 58/505 (11%)

Query: 168 KLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKS 227
           K + +  +IE+L    ++  +E+    + +S +  EL +   +L K+ +E  ++  E++ 
Sbjct: 183 KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE 242

Query: 228 KAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTME 287
             + L       +K E +I+ L + I+E ++E+           E+L+     L++    
Sbjct: 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEI-----------EELEEKVKELKE---- 287

Query: 288 WLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQ 347
                  LK+ AEE  +  E   + L++ R ++K LS +  E+   ++ +    ++ E  
Sbjct: 288 -------LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Query: 348 EHLLGKQLVELEEQKKSLTSYMTSLKDA-QVEVESERVKLRVTEARNKELERDL---SME 403
           E L  K L ELE++ + L       ++A   + E ER+K R+T    ++LE++L      
Sbjct: 341 EELKKK-LKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKA 399

Query: 404 KELVEELQNELNKEKYSLQQAIDEVSSLQEEL----------GRKNTEFGETENLLRVKE 453
           KE +EE  +++      L++ I E+    EEL          GR+ TE    + LL    
Sbjct: 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE-EHRKELLEEYT 458

Query: 454 SDLVEAKLEIQNLKSKQASLQLILEE------KDFELSNARQMLEELNNEVRELKMIMSS 507
           ++L   + E++ ++ K+  L+  L E      K+ EL   +++ E+L     +LK     
Sbjct: 459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE 518

Query: 508 REEQLVQAMDTLQEK----DEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKN 563
             E+  +  + L+EK       +  L+ EL+  +    +   + +++ +L  +L  +   
Sbjct: 519 ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL--AELL 576

Query: 564 DESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL 623
            E           LE   + L+   + +        +ELK A + L  +E E+   +  L
Sbjct: 577 KELEELGFESVEELEERLKELEPFYNEY--------LELKDAEKELEREEKELKKLEEEL 628

Query: 624 TVKDEELKTVLGRLDAKEKELKKLE 648
               EEL     RL+   KEL++LE
Sbjct: 629 DKAFEELAETEKRLEELRKELEELE 653

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 53.2 bits (127), Expect = 6e-07
 Identities = 110/550 (20%), Positives = 220/550 (40%), Gaps = 20/550 (3%)

Query: 133  ELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAA 192
            E  +A++   ++   +  A    +  EE       +   + R  E+ ++    R Q    
Sbjct: 1216 EARKAEDA--KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273

Query: 193  MQSALSLKELEL--EKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLR 250
             + A    EL+   EK +++  KK+EE  K D E K KA+   +A+E  KK E   +   
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKKAD 1332

Query: 251  KVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETN 310
               ++ EE  +A+ A +   E      EA  EK        ++A KK A+ A ++ EE  
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK-ADAAKKKAEEKK 1391

Query: 311  DTLEDFRRVK--KLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSY 368
               E  ++ +  K  +D   +  +++K    ++K+ EE+     K+  E +++ +     
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK-----KKADEAKKKAEEAKKA 1446

Query: 369  MTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN---ELNKEKYSLQQAI 425
              + K A+   ++E  K +  EA+  +  +  + E +  +E +    E  K+    ++A 
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506

Query: 426  DEVSSLQE----ELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKD 481
            +      E    E  +K  E  + E   +  E+   E K +   LK  +   +   ++K 
Sbjct: 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566

Query: 482  FELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS 541
             E   A +       +  E K    +R E++++  +  ++          E      ++ 
Sbjct: 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626

Query: 542  EAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIE 601
            +AE   +++  L  K     K  E       ++      +    + +     + K+ E +
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686

Query: 602  LKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLY 661
             K A E L+ +  E   A+     + EE K       A+E+   K EE  ++A + +K  
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746

Query: 662  ALAQERFGEK 671
              A++   EK
Sbjct: 1747 EEAKKDEEEK 1756

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 60/282 (21%), Positives = 123/282 (43%), Gaps = 6/282 (2%)

Query: 65   ARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAE 124
            A++  E    + +  E     +    +  +    +E LE+ ++ +   LK   E L++  
Sbjct: 750  AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809

Query: 125  RRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLK 184
              + L + E    +E L   ER I     R E LEE++ + +  + S A  IE+L+  ++
Sbjct: 810  AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

Query: 185  ERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQET 244
            E + E+ A+ +  +  E  L  +RSEL + SEE  +++S+     + L E  E + + E 
Sbjct: 870  ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

Query: 245  EIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASR 304
             ++ L   I   +E L    +L       L+  EA   K   +   ++  LK+L  +   
Sbjct: 930  RLEGLEVRIDNLQERLSEEYSL------TLEEAEALENKIEDDEEEARRRLKRLENKIKE 983

Query: 305  RMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEE 346
                    +E++  +K+    + ++     ++  +  + +EE
Sbjct: 984  LGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 50.4 bits (120), Expect = 3e-06
 Identities = 40/210 (19%), Positives = 87/210 (41%), Gaps = 10/210 (4%)

Query: 273 KLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVS 332
           +L  +   L     E   +Q   +    E      E     ++   V++ L+  R  L  
Sbjct: 75  QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134

Query: 333 SQKSLASSRKQMEEQEHLLGK---QLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVT 389
           +Q+ LA   KQ ++ +  L     Q  +LE Q +SL +    L+ +  +++S+ + L++ 
Sbjct: 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194

Query: 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL 449
            A+ ++  ++L+      +    EL +   + QQ    +     ++ +K  +       +
Sbjct: 195 SAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQI 254

Query: 450 RVKESDLVEAKLEIQNLKSKQASLQLILEE 479
           R +E  L       Q L++ QA L+  + +
Sbjct: 255 RERERQL-------QRLETAQARLEQEVAQ 277

Length = 499

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 102/473 (21%), Positives = 192/473 (40%), Gaps = 36/473 (7%)

Query: 205 EKMRSELLKKSEEAAKIDSEL---KSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELE 261
            +  + L  K +E  +I  EL   +   ++     EV+K+ + +I+ L   + E  E++E
Sbjct: 143 GEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIE 202

Query: 262 ASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKK 321
             +   + E ++LK +E   E+        ++ L++  E    R+ E  +  E    +K 
Sbjct: 203 DLLEALEEELKELKKLEEIQEE------QEEEELEQEIEALEERLAELEEEKERLEELKA 256

Query: 322 LLSDVRSELVSSQKSLASSRKQME---EQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE 378
            L ++ S  + + K      +++E   E+     ++L ELE + + L   +  L+    E
Sbjct: 257 RLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEE 316

Query: 379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRK 438
           +E    KL+  E R ++LE  L   +  +EEL  E N+              L+E L   
Sbjct: 317 LEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELA----------KLLEERLKEL 366

Query: 439 NTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEV 498
                E E  L      L + +  IQ LK + A L   LEE   EL    + LEEL  E+
Sbjct: 367 EERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELEREL 426

Query: 499 RELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELD-----GTKLKVSEAETVVEQIVDL 553
            EL+  +   EEQ+ Q    L+ K+  +  L    +     G +L     + ++E     
Sbjct: 427 EELEEEIKKLEEQINQ----LESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELE 482

Query: 554 THKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKE 613
             +L      ++    +  +   LE   + L++      L+ ++   E    +       
Sbjct: 483 LEELEEELSREKEEAELREEIEELEKELRELEEELIE-LLELEEALKEELEEKLEKLENL 541

Query: 614 MEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQE 666
           +E    +     +  +L+ +   L   E  L++L+E +E+   LR      +E
Sbjct: 542 LE----ELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEE 590

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 55/252 (21%), Positives = 120/252 (47%), Gaps = 3/252 (1%)

Query: 99  LEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKL 158
           LE  E +++ + + L++  E+LE+ +  +     E+   + E+      ++   +  E+L
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321

Query: 159 EEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEA 218
           EE L +   K+ +    +E+ +  L+E +Q +A ++ A    E +L  +  EL +  E  
Sbjct: 322 EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL 381

Query: 219 AKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVE 278
            +  +EL+++   L E    +++ + EI+SL + ++   E LE      K  E +L+ ++
Sbjct: 382 REELAELEAE---LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438

Query: 279 ANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLA 338
             LE+   E    ++ L++L +       E  +  E+ +R++K LS + + L   +    
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498

Query: 339 SSRKQMEEQEHL 350
           +S+      E L
Sbjct: 499 ASQGVRAVLEAL 510

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 106/436 (24%), Positives = 198/436 (45%), Gaps = 43/436 (9%)

Query: 98  NLEILESDLQAVLAALKKKEEDLEDAERRV---CLEHSELNRAKEELLRREREIDVACSR 154
            +E   S L+  +  ++++ ++LE+ E R+     +  EL +  EEL  R    + A ++
Sbjct: 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK 370

Query: 155 HEKLE----EELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSE 210
            E+LE       G +  KL  +   +E  K  ++E   +I A    L  +  EL+K   E
Sbjct: 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430

Query: 211 LLK----------------KSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQ 254
           L K                + E   +  +ELK   + L E  E  +K   E++ L KV++
Sbjct: 431 LKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK 490

Query: 255 EKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLE 314
           ++ E ++      +++E + K+ + NLE+   +    +  LK+   +    ++     LE
Sbjct: 491 KESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK-LKEKLIKLKGEIKSLKKELE 549

Query: 315 DFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSY---MTS 371
               +KK L+++  +L   ++ LA   K++EE   L  + + ELEE+ K L  +      
Sbjct: 550 KLEELKKKLAELEKKLDELEEELAELLKELEE---LGFESVEELEERLKELEPFYNEYLE 606

Query: 372 LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELN--KEKYS---LQQAID 426
           LKDA+ E+E E  +L+  E    +   +L+  ++ +EEL+ EL   ++KYS    ++  +
Sbjct: 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE 666

Query: 427 EVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSN 486
           E   L  EL     E  E E      +  L + K E++  +  +  L+         L  
Sbjct: 667 EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK--------LEK 718

Query: 487 ARQMLEELNNEVRELK 502
           A + +EEL  +V++ K
Sbjct: 719 ALERVEELREKVKKYK 734

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 62/319 (19%), Positives = 130/319 (40%), Gaps = 27/319 (8%)

Query: 372 LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSL 431
           +++ + ++      L       +ELE +L   ++ +EEL  +++  +  L +   EV  L
Sbjct: 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745

Query: 432 QEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQML 491
           +E + + + E  E E  +   E  L EA+ E+   +++   L+  +E+   EL   R+ L
Sbjct: 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805

Query: 492 EELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIV 551
           +EL  E+  L               +      E +  L+  +  T+      E + EQI 
Sbjct: 806 DELRAELTLLN--------------EEAANLRERLESLERRIAATE---RRLEDLEEQIE 848

Query: 552 DLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRM 611
           +L+  +       E           +E ++  L+    N R   ++    L+   E L  
Sbjct: 849 ELSEDIESLAAEIEELEE------LIEELESELEA-LLNERASLEEALALLRSELEELSE 901

Query: 612 KEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQERFGEK 671
           +  E+ + +  L  + EEL+  L +L+ + + L+   + +++   L + Y+L  E     
Sbjct: 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER--LSEEYSLTLEEAEAL 959

Query: 672 SVG-DLAIERLQLEAAQLE 689
               +   E  +    +LE
Sbjct: 960 ENKIEDDEEEARRRLKRLE 978

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 51/285 (17%), Positives = 98/285 (34%), Gaps = 28/285 (9%)

Query: 293 DALKKLAEEASRRMEETNDTL-----EDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQ 347
             L +L +     +E+  +        +  +V ++     S L+S       S K +E +
Sbjct: 20  PVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGR 79

Query: 348 EHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELV 407
             +L +++ +LE + KSL   +   +    EVE      R  E R  EL+ +L   ++L+
Sbjct: 80  LFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELT---RKLEERLSELDEELEDLEDLL 136

Query: 408 EELQN------ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESD----LV 457
           EEL+       +L+  +      +      +E+L        +   L           +V
Sbjct: 137 EELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVV 196

Query: 458 EAKLEI-QNLKSKQASLQL-ILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQA 515
               E    +      L   + E  +F+   +  + E    EV           E L   
Sbjct: 197 AHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISE--LEEVIAEI---QDELESLRSE 251

Query: 516 MDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVIS 560
           ++ L EK    L+   E             V+ ++    + L I 
Sbjct: 252 LEALAEKIAEELLAVRE---ILEIEKALGDVLSKLARTEYTLAIE 293

Length = 660

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 56/287 (19%), Positives = 116/287 (40%), Gaps = 15/287 (5%)

Query: 161 ELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAK 220
           E+ QS LKLV +   I ++   L++ + E+ +++ + +  +   E      L +      
Sbjct: 437 EVLQSVLKLVMEKHIISEISEILEDIEAELDSLERSSNGDDENEEVAMVGSLVE------ 490

Query: 221 IDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVE-- 278
              E  +  +   E    V +       L   +   ++ L+    L K  +E    +E  
Sbjct: 491 ---ESSAVIERSQELEGAVSRISEFTSVLEHEVTVCQDLLDGKADLEKFIQEFSLTLEWV 547

Query: 279 ANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLA 338
            N EK   +  +    +KK         +E N   E    V     +    L S +++L 
Sbjct: 548 VNQEKSLQDVSVEASEIKKNFLGLKSSEKEINSPDEVKGAVCISTLEELETLKSEKENLD 607

Query: 339 SSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKD----AQVEVESERVKLRVTEARNK 394
               + ++       +L E E++ + L S + + ++    A+ +++         E R K
Sbjct: 608 GELSKCKDDLEESKNKLQETEKKLEELKSELDASQESNSLAETQLKCMVESYESLELRAK 667

Query: 395 ELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTE 441
           +LE +    +E +  L++EL KE+ + Q+ I +   L+E++ R   E
Sbjct: 668 DLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQE 714

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.8 bits (109), Expect = 8e-05
 Identities = 52/258 (20%), Positives = 110/258 (42%), Gaps = 17/258 (6%)

Query: 300 EEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELE 359
           EE   ++EE  + + +  +    L     EL    + L    +++  Q   L K L  LE
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 360 EQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKY 419
            + + L   +  L     E+E+E  +L   E R +E E +L+  +  +EEL+ ++ + K 
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEEL---EERLEEAEEELAEAEAEIEELEAQIEQLKE 796

Query: 420 SLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEE 479
            L+   + +  L+ EL   N E       L   E  +   +  +++L+            
Sbjct: 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE----------- 845

Query: 480 KDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLK 539
              ++    + +E L  E+ EL+ ++   E +L   ++     +E + +L++EL+    +
Sbjct: 846 ---QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902

Query: 540 VSEAETVVEQIVDLTHKL 557
           + E E+   ++     +L
Sbjct: 903 LRELESKRSELRRELEEL 920

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.8 bits (109), Expect = 8e-05
 Identities = 101/467 (21%), Positives = 182/467 (38%), Gaps = 50/467 (10%)

Query: 117 EEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHI 176
           E ++ED    +     E     EE+      ++      + L  E G  +    +     
Sbjct: 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316

Query: 177 EDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEAN 236
           E+L+ R +E    +   + A      E E +R +     E A ++  E       L EA 
Sbjct: 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376

Query: 237 EVVKKQETEIQSLRKVIQEKEEELE-ASVALRKVEEEKLKVVEANLEKRTMEWLLSQD-- 293
           E V+ +  EI+ L + I+E  E    A V L   E+   ++ E   E R  E  L     
Sbjct: 377 EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR 436

Query: 294 ALKKLAEEASRRMEETN--------------DTLEDFRRVKKLLSDVRSELVSSQKSLAS 339
             ++  EEA   +E                 +T+E+ R   + L     +L    + +  
Sbjct: 437 TARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV-- 494

Query: 340 SRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERD 399
                 E+     + LVE E++ + L            E   E ++  + E R    E+ 
Sbjct: 495 ------EERLERAEDLVEAEDRIERL------------EERREDLEELIAERRETIEEKR 536

Query: 400 LSME--KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGET----ENLLRVKE 453
              E  +E   EL+ E  +++ +  +A +E    +EE+   N++  E     E+L R++ 
Sbjct: 537 ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRT 596

Query: 454 S--DLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNE-----VRELKMIMS 506
               + +A+ EI+ L+ K+ +L  + +E+   L+  R+   EL  E     + E +    
Sbjct: 597 LLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKE 656

Query: 507 SREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDL 553
             EE L Q  + L E  E    LQ E+   + ++ E E + E+   L
Sbjct: 657 RAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREAL 703

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 96/461 (20%), Positives = 196/461 (42%), Gaps = 37/461 (8%)

Query: 97  LNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHE 156
           L +E + SD +  L  LK + E+ E+ +      H  LN  + EL   + EI+    + E
Sbjct: 176 LGVERVLSDQRGSLDQLKAQIEEKEEKDL-----HERLNGLESELAELDEEIERYEEQRE 230

Query: 157 KLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSE 216
           +  E   +++  L     H E  +  L+  + EI  ++  ++  E E E++  E+    E
Sbjct: 231 QARETRDEADEVL---EEHEERRE-ELETLEAEIEDLRETIAETEREREELAEEVRDLRE 286

Query: 217 EAAKIDSE---LKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEK 273
              +++ E   L ++A + +   E V+ +  E++   + ++++ EE   +      E E 
Sbjct: 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAES 346

Query: 274 LKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSS 333
           L+    +LE+R  E       L++ A E    +EE  + +ED R   + + ++  E+   
Sbjct: 347 LREDADDLEERAEE-------LREEAAELESELEEAREAVEDRR---EEIEELEEEIEEL 396

Query: 334 QKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARN 393
           ++    +   +   E  L +   E +E ++       +L+ A+  VE     L   +   
Sbjct: 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456

Query: 394 KELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKE 453
                + S   E +EE +  + + +  L+   +EV  ++E L R                
Sbjct: 457 CGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA--------------- 501

Query: 454 SDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLV 513
            DLVEA+  I+ L+ ++  L+ ++ E+   +   R+  EEL     EL+     + E   
Sbjct: 502 EDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561

Query: 514 QAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLT 554
           +A +  +E  E V  L ++L   K ++   E +   +  + 
Sbjct: 562 EAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIA 602

Length = 880

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 61/317 (19%), Positives = 131/317 (41%), Gaps = 33/317 (10%)

Query: 213 KKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEE 272
           KKSE  + I SE+++    L E +E  +    EI  LR  ++E +  LE+    +K   E
Sbjct: 199 KKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES--LEKKFRSE 256

Query: 273 KLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVS 332
              + E        +       ++   +    ++ E          +  LL   +++L  
Sbjct: 257 GGDLFE-----EREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQK 311

Query: 333 SQKSLASS--RKQMEEQEHLLGKQLVEL---EEQKKSLTSYM-TSLKDAQVEVESERVKL 386
            ++S  +   ++++EE++  L + L +L    E  K + + +    K A  + E   +  
Sbjct: 312 EEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSE---IPH 368

Query: 387 RVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETE 446
           R++ +   +LE        L+++++ EL   K  L + + E+     E+ +K +     E
Sbjct: 369 RLSGSELTQLEV-------LIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEE 421

Query: 447 NLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVREL--KMI 504
            +     + L+E   E QN   +    +  +EE   +L   ++ +E L   + E   + I
Sbjct: 422 QI-----AQLLEELGEAQN---ELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKI 473

Query: 505 MSSREEQLVQAMDTLQE 521
            +   E+ +   D  ++
Sbjct: 474 NAFELERAITIADKAKK 490

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 44/221 (19%), Positives = 105/221 (47%), Gaps = 13/221 (5%)

Query: 131 HSELNRAKEELLRREREIDVACSRHEKLEE--ELGQSNLKLVSQARHIEDLKLRLKE-RD 187
            ++   A E+LL  E+++ +A + H + E+  +L  +    ++++   +  +  L+E  D
Sbjct: 448 QAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPD 507

Query: 188 QEIAAMQSA-LSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEI 246
           Q   A Q   L ++  ELE+     L++ + A ++ ++   +     +A E+    +   
Sbjct: 508 QRHLAEQVQPLRMRLSELEQR----LRQQQSAERLLADFCKRQGKNLDAEELEALHQELE 563

Query: 247 QSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRM 306
             +  +        E  +ALR+ E+E+L+    +L +R   WL +Q+AL++L+E++    
Sbjct: 564 ALIESLSDSVSNAREQRMALRQ-EQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEF 622

Query: 307 EETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQ 347
            ++ D  E  +++ +       E    +  L + +  ++E+
Sbjct: 623 TDSQDVTEYMQQLLER----EREATVERDELGARKNALDEE 659

Length = 1480

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 59/306 (19%), Positives = 139/306 (45%), Gaps = 9/306 (2%)

Query: 99   LEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKL 158
            +E LE + + +   L++ EEDL   E+ +    SEL   +  +   E ++         L
Sbjct: 725  IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL 784

Query: 159  EEELGQSNLK-LVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEE 217
            E  L  S +  + ++   +E+   R++ R +EI    + L+L++  LEK   EL ++   
Sbjct: 785  EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI- 843

Query: 218  AAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVV 277
                  +LK + + + +  E +  ++ E++   + ++    +LE+ +   K E ++L+  
Sbjct: 844  ------DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897

Query: 278  EANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSL 337
               LE++  E     +  +K   E   ++E   + L +    K    ++  E +S +  +
Sbjct: 898  LRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED-V 956

Query: 338  ASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELE 397
             +  +++EE+   L    +   ++ + +   +  LK+ + ++E ER  +       ++ +
Sbjct: 957  QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016

Query: 398  RDLSME 403
            R++ ME
Sbjct: 1017 REVFME 1022

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 45.1 bits (107), Expect = 2e-04
 Identities = 69/330 (20%), Positives = 124/330 (37%), Gaps = 53/330 (16%)

Query: 113 LKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQ 172
           L++  E L   E R+   H EL  A EE L             E+ EE     N      
Sbjct: 251 LQEDFEQLLSLELRLQHLHGEL-VADEERLA------------EEQEERQEAKNRLRQQL 297

Query: 173 ARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSEL---LKKSEEAAKIDSE-LKSK 228
               + LK    E +QE++A  + L+    ELE +  +         E  + D + L S 
Sbjct: 298 RTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSI 357

Query: 229 AQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEW 288
              L E    +     + Q     +Q K E L+      K++E+  + +E N        
Sbjct: 358 RSELEEVEARLDALTGKHQD----VQRKYERLKQ-----KIKEQLERDLEKN-------- 400

Query: 289 LLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQE 348
               + L  + EE  R+     + L+       L S +R +L + +           E+E
Sbjct: 401 ---NERLAAIREEKDRQKAAIEEDLQ------ALESQLRQQLEAGKLEF-------NEEE 444

Query: 349 HLLGKQLVELEEQKKSLT---SYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKE 405
           + L  +L  L+++  S T     +  L+     +E  + +    EA  ++L+ +L   ++
Sbjct: 445 YELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRK 504

Query: 406 LVEELQNELNKEKYSLQQAIDEVSSLQEEL 435
             +E    L + +  L Q    +  L+ +L
Sbjct: 505 RRDEALEALQRAERRLLQLRQALDELELQL 534

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 95/595 (15%), Positives = 209/595 (35%), Gaps = 20/595 (3%)

Query: 77  QKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNR 136
           + +EE  +    +    +  L    L+   +  L   + KE+   + E  + L++ +LN 
Sbjct: 178 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNE 237

Query: 137 AKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSA 196
            + +LL+     +       K E E  +  L  V +    E+ + +L+E + ++ A +  
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297

Query: 197 LSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEK 256
               EL   + R    ++  + ++ + +   K   L +  E +++ E E++ L    + +
Sbjct: 298 ELKSELLKLERRKVDDEEKLKESEKELKKLEKE--LKKEKEEIEELEKELKELEIKREAE 355

Query: 257 EEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDF 316
           EEE E    L++  E+  + + A  +  +          ++L+  A  + EE     E+ 
Sbjct: 356 EEEEEQLEKLQEKLEQLEEELLAKKKLES----------ERLSSAAKLKEEELELKNEEE 405

Query: 317 RRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQ 376
           +  K LL     E    ++      K +EE E  L  +  +L E+K+ L      LK  +
Sbjct: 406 KEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQA--LKLLK 463

Query: 377 VEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELG 436
            ++E ++ +  + E +  +L   L +     +  +    + K     A+           
Sbjct: 464 DKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGL 523

Query: 437 RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNN 496
           R  +  G   +L     +  V   + +    S  A      ++    L+           
Sbjct: 524 RIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVL 583

Query: 497 EVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHK 556
               LK+ + S     +     L + ++  L    +    K+     +           K
Sbjct: 584 LDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELT------K 637

Query: 557 LVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEV 616
           L+ S K  ES              +  L         +    +   + A   L   E+  
Sbjct: 638 LLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILR 697

Query: 617 LAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQERFGEK 671
              +     +  + +    +L+ +E    K++E  +  N+  KL     +   E+
Sbjct: 698 RQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEE 752

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 90/568 (15%), Positives = 186/568 (32%), Gaps = 32/568 (5%)

Query: 111 AALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLV 170
           AA  K++  +E+  R +   HS+     E  +R   E+  +       +  L Q    L 
Sbjct: 331 AAHVKQQSSIEEQRRLLQTLHSQ-----EIHIRDAHEVATSIREISCQQHTLTQHIHTLQ 385

Query: 171 SQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQ 230
            Q   +      L +    +   Q+ +  +      ++ +L    ++        +  A 
Sbjct: 386 QQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAA 445

Query: 231 MLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLL 290
            +    +  K ++  +Q   + ++E+E++L+    +   E  K  VV A L +   E   
Sbjct: 446 AITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCP 505

Query: 291 SQDALKKLAEEASRRMEETNDT------LEDFRRVKKLLSDVRSELVSSQKSLASSRKQM 344
              +                 T       + + +++    DV  +L S +K  AS ++QM
Sbjct: 506 LCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565

Query: 345 EEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEK 404
           +E +             K+ + +        Q   E       +       L R L  E+
Sbjct: 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625

Query: 405 ELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDL-----VEA 459
           +L +   +     +  L   +  + +LQ  L ++       E+ L ++          + 
Sbjct: 626 DLQDVRLHLQQCSQ-ELALKLTALHALQLTLTQER----VREHALSIRVLPKELLASRQL 680

Query: 460 KL-EIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDT 518
            L ++Q+ K +    + +L +    L      +EE + E  E++   SS    L    D 
Sbjct: 681 ALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDA 740

Query: 519 LQEKDEHVLILQN----ELDGTKLKVSEAETVVEQIVDLTHKLV--ISNKNDESSTSMPT 572
           L +  + ++                 +E  T   Q       L   I   N         
Sbjct: 741 LNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHL 800

Query: 573 DDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKT 632
                  + Q +    D   LQ + L  E +     L  K   +      L   +E  K 
Sbjct: 801 LKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSK- 859

Query: 633 VLGRLDAKEKELKKLEETVEDANDLRKL 660
              +L    +E  K+ +  +  N + ++
Sbjct: 860 ---QLAQLTQEQAKIIQLSDKLNGINQI 884

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 16/169 (9%)

Query: 68  LLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRV 127
           L+  L  + +  +E         K+ +  L   +LE+    +    ++++E   + E   
Sbjct: 21  LVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRERE--- 77

Query: 128 CLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERD 187
                EL R +E L+++E ++D    + + LE +L +    L ++   +E+L+ +L    
Sbjct: 78  -----ELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNEL 132

Query: 188 QEIAAMQSALSLKEL------ELEKMRSELLKKSEEAAKIDSELKSKAQ 230
             +A +    + K L      ELE+ +++ +KK EE  + D E + KAQ
Sbjct: 133 YRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEE--EADLEAERKAQ 179

Length = 508

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 61/298 (20%), Positives = 114/298 (38%), Gaps = 24/298 (8%)

Query: 99  LEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKL 158
           LE  + +   ++      E D+ D   R+    + L  + E+    E +   A S  E +
Sbjct: 145 LEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESM 204

Query: 159 EEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEA 218
             E    N  L  +A + +    R+ E +Q+I  +       +  LE  +    +     
Sbjct: 205 SAER---NALLAQRAENQQ----RILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMK 257

Query: 219 AKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVE 278
            ++   LK       +        + E + L + ++  +E LE+S     +  E+L  + 
Sbjct: 258 GELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLG 317

Query: 279 A------------NLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDV 326
           +             LE   M   LSQ  L  L E  S+  +E     +     K  +  +
Sbjct: 318 SLRDHTIAELHQSRLESAQMSLQLSQLNL-ALKEGQSQWAQERETLRQSAEADKDRIQKL 376

Query: 327 RSELVSSQKSLASSRKQMEEQEHLLGKQ----LVELEEQKKSLTSYMTSLKDAQVEVE 380
            +EL+  ++ L   R Q E+ E  LG +     V+L E ++ L+   ++L+  Q E E
Sbjct: 377 SAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKE 434

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.9 bits (97), Expect = 0.002
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 14/135 (10%)

Query: 177 EDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEAN 236
            + +  L+ER  E+  ++  L  KE  L++ + ELL+K EE      EL+ K + L +  
Sbjct: 71  NEFEKELRERRNELQKLEKRLLQKEENLDR-KLELLEKREE------ELEKKEKELEQKQ 123

Query: 237 EVVKKQETEIQSLRKVIQEKEEELEASVALRKVE--EEKLKVVEANLEKRTMEWLLSQDA 294
           + ++K+E E++ L   I+E+ +ELE    L   E  E  L+ VE           L ++ 
Sbjct: 124 QELEKKEEELEEL---IEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAV--LIKEI 178

Query: 295 LKKLAEEASRRMEET 309
            ++  EEA ++ +E 
Sbjct: 179 EEEAKEEADKKAKEI 193

Length = 520

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 56/285 (19%), Positives = 119/285 (41%), Gaps = 2/285 (0%)

Query: 378 EVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSL-QEELG 436
           E E+   +    E +   LE +L    E + EL+  L + +  L++   ++  L +EE  
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQL 290

Query: 437 RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNN 496
           R   + GE E  +   E  + E + E+++ + + A L+  +++   E+    + +EE   
Sbjct: 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350

Query: 497 EVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLTH 555
              +L    +  +E+L      L+E D+     ++EL   + K+ +    + E   +L  
Sbjct: 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410

Query: 556 KLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEME 615
                 +  E    +     G+E     L++  ++  L+ K+ E +L+    +L   E E
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470

Query: 616 VLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKL 660
           +   K      ++EL  +   L   E + +  EE V     + ++
Sbjct: 471 LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEV 515

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 75/449 (16%), Positives = 152/449 (33%), Gaps = 10/449 (2%)

Query: 41   LGLVRAVLPDGKKSSVNGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLE 100
            L     VL D                  L         LE           +        
Sbjct: 576  LPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTEL 635

Query: 101  ILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEE 160
                +      +  +K   LE+         + L+   +ELL  +   + A S   K E 
Sbjct: 636  TKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEI 695

Query: 161  ELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAK 220
               Q  +K   Q    E  KL+L++ +     +Q A      EL+ +  ++ +K EE  K
Sbjct: 696  LRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEK 755

Query: 221  IDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEAN 280
               + + + +  +E +   K+   E +   K+  E+E+E +      ++   + ++ E  
Sbjct: 756  SRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 815

Query: 281  LEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKS-LAS 339
                  + L+ Q+   K  E     +E   +   +    ++L               L  
Sbjct: 816  ELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLL 875

Query: 340  SRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERD 399
              +++EEQ+     +  E +E+++       S KD  +E +   ++ R+ E     L+ +
Sbjct: 876  KEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYE 935

Query: 400  LSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEA 459
                    EEL  E   EK   +   +E     + L     E G    +   +  +  E 
Sbjct: 936  -----SEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEER 990

Query: 460  ----KLEIQNLKSKQASLQLILEEKDFEL 484
                +L+ + L+ ++  L   + E+  + 
Sbjct: 991  YNKDELKKERLEEEKKELLREIIEETCQR 1019

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	771
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.65
PRK02224	880	chromosome segregation protein; Provisional	99.64
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.61
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.56
PRK02224	880	chromosome segregation protein; Provisional	99.54
PRK03918	880	chromosome segregation protein; Provisional	99.52
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.45
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.45
PRK03918	880	chromosome segregation protein; Provisional	99.45
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.4
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.39
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.37
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.34
PRK01156	895	chromosome segregation protein; Provisional	99.3
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.28
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.16
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.0
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.85
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.83
PRK01156	895	chromosome segregation protein; Provisional	98.71
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.59
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.45
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.39
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.32
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.31
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.3
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.26
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.25
PRK04863	1486	mukB cell division protein MukB; Provisional	98.23
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.22
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.13
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.11
PRK04863	1486	mukB cell division protein MukB; Provisional	98.11
PHA02562	562	46 endonuclease subunit; Provisional	98.08
PHA02562	562	46 endonuclease subunit; Provisional	98.02
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.97
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.91
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.9
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.88
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.88
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.88
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.81
PRK04778	569	septation ring formation regulator EzrA; Provision	97.77
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.76
PRK04778	569	septation ring formation regulator EzrA; Provision	97.75
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.74
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.72
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.71
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.7
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.67
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.67
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.63
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.54
PRK11637	428	AmiB activator; Provisional	97.5
PRK11637	428	AmiB activator; Provisional	97.44
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.37
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.37
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.35
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.26
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.26
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.23
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.15
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.14
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.1
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.03
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.03
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.95
PRK11281	1113	hypothetical protein; Provisional	96.92
PRK09039	343	hypothetical protein; Validated	96.91
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.9
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.89
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.85
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.79
PRK09039	343	hypothetical protein; Validated	96.75
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.72
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.69
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.61
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.61
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.59
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.49
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.47
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.41
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.4
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.34
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.27
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.23
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.02
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.96
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.92
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.87
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.71
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.69
PRK10246	1047	exonuclease subunit SbcC; Provisional	95.67
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.66
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.59
KOG4673	961	consensus Transcription factor TMF, TATA element m	95.53
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.51
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.45
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.44
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.41
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	95.39
KOG1003	205	consensus Actin filament-coating protein tropomyos	95.38
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.38
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	95.34
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.26
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.22
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.22
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.12
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.88
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.85
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.85
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.69
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.67
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.62
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.53
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.49
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	94.46
PRK10246	1047	exonuclease subunit SbcC; Provisional	94.34
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.15
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	94.14
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.12
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.1
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.02
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.01
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.01
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.9
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	93.9
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.85
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.78
PRK11281	1113	hypothetical protein; Provisional	93.53
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.51
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.22
KOG0018	1141	consensus Structural maintenance of chromosome pro	93.21
COG4372	499	Uncharacterized protein conserved in bacteria with	93.13
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	93.02
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.0
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.99
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.76
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.54
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.41
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.34
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	92.32
PRK10929	1109	putative mechanosensitive channel protein; Provisi	92.13
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	92.09
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	91.97
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	91.42
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	91.32
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	91.29
COG4372	499	Uncharacterized protein conserved in bacteria with	91.21
KOG0964	1200	consensus Structural maintenance of chromosome pro	91.15
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.98
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.85
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	90.6
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.6
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	90.6
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.53
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	90.36
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.93
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.77
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	89.62
KOG4677	554	consensus Golgi integral membrane protein [Intrace	89.6
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.49
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	89.34
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	89.33
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	88.82
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	88.79
KOG4673	961	consensus Transcription factor TMF, TATA element m	88.44
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	87.92
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	87.71
PRK10869	553	recombination and repair protein; Provisional	87.41
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	87.31
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	87.26
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	87.21
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	87.07
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.81
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	86.52
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	86.32
COG5185	622	HEC1 Protein involved in chromosome segregation, i	85.96
KOG1003	205	consensus Actin filament-coating protein tropomyos	85.57
KOG0933	1174	consensus Structural maintenance of chromosome pro	85.54
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.49
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	85.28
PF13514	1111	AAA_27: AAA domain	85.24
PF13166	712	AAA_13: AAA domain	85.13
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	85.02
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	85.0
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	84.13
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	84.0
KOG2196	254	consensus Nuclear porin [Nuclear structure]	83.85
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	83.62
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	83.56
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	83.33
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	83.0
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	82.74
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	82.66
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.14
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	81.64
COG2433	652	Uncharacterized conserved protein [Function unknow	81.47
COG4026	290	Uncharacterized protein containing TOPRIM domain,	81.39
COG4477	570	EzrA Negative regulator of septation ring formatio	81.38
COG2433	652	Uncharacterized conserved protein [Function unknow	81.23
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	81.19
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	80.37

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.65  E-value=3.3e-08  Score=118.52  Aligned_cols=112  Identities=21%  Similarity=0.275  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160          386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQN  465 (771)
Q Consensus       386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEq  465 (771)
                      +..+..++..++..+..+...+..++..+......+..+...+..++.++..+...+..+...+......+..+...+..
T Consensus       672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~  751 (1179)
T TIGR02168       672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ  751 (1179)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666666666666666666666666655555555555544445555555554444444444444444


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160          466 LKSKQASLQLILEEKDFELSNARQMLEELNNE  497 (771)
Q Consensus       466 LKsEIesLq~ELEEIdeELeeiqrrLeeLr~E  497 (771)
                      +...+..+...+..+..++..+...+..+...
T Consensus       752 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  783 (1179)
T TIGR02168       752 LSKELTELEAEIEELEERLEEAEEELAEAEAE  783 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444443333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.64  E-value=4.4e-08  Score=116.66  Aligned_cols=104  Identities=15%  Similarity=0.185  Sum_probs=41.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160          453 ESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNE  532 (771)
Q Consensus       453 EnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~E  532 (771)
                      ...+..+..+++.+...+.......+.+...+..+..++.++..+++.+...+..++ ++.++...+..+...+......
T Consensus       536 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~  614 (880)
T PRK02224        536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREK  614 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333334444444444444444444444444444 3444444444333333333333


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 004160          533 LDGTKLKVSEAETVVEQIVDLTHKLVIS  560 (771)
Q Consensus       533 LNe~nIe~sQqEtl~eRIeeLt~eLe~s  560 (771)
                      +..+....   +.+.+++..+..++...
T Consensus       615 ~~~l~~~~---~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        615 REALAELN---DERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            32222221   24455555555555543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.61  E-value=3.6e-08  Score=118.19  Aligned_cols=139  Identities=25%  Similarity=0.318  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          398 RDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLIL  477 (771)
Q Consensus       398 rqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~EL  477 (771)
                      ..+..+...+..++..+......+..+...+..+..++..+...+......+......+..+..+++.+..++..+...+
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~  756 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL  756 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004160          478 EEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGT  536 (771)
Q Consensus       478 EEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~  536 (771)
                      ..+..++......+..+..++..+...+..+...+..+...+......+..++.++...
T Consensus       757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  815 (1179)
T TIGR02168       757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL  815 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444344444444444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.56  E-value=2.8e-07  Score=111.33  Aligned_cols=110  Identities=19%  Similarity=0.256  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160          391 ARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQ  470 (771)
Q Consensus       391 sE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEI  470 (771)
                      .++..+...+-.+..++..+...+...+..+..+..++..+...+..+..++..+...+.....++..+...+..+...+
T Consensus       674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~  753 (1164)
T TIGR02169       674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI  753 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555554444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160          471 ASLQLILEEKDFELSNARQMLEELNNEVRE  500 (771)
Q Consensus       471 esLq~ELEEIdeELeeiqrrLeeLr~ELkE  500 (771)
                      ..+...+..+..++......+..+..++..
T Consensus       754 ~~~~~el~~l~~~i~~l~~~i~~l~~el~~  783 (1164)
T TIGR02169       754 ENVKSELKELEARIEELEEDLHKLEEALND  783 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.54  E-value=4.1e-07  Score=108.48  Aligned_cols=19  Identities=26%  Similarity=0.328  Sum_probs=8.3

Q ss_pred             HHhhhhhhHHHHHhHHhhh
Q 004160          633 VLGRLDAKEKELKKLEETV  651 (771)
Q Consensus       633 ~~~~~~~~~~el~~~~~~~  651 (771)
                      .++.++...++++.++..+
T Consensus       689 ~~e~~~~~~~~~~~~~~~~  707 (880)
T PRK02224        689 ELEELEELRERREALENRV  707 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444433

>PRK03918 chromosome segregation protein; Provisional

Probab=99.52  E-value=5.7e-07  Score=106.93  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004160          344 MEEQEHLLGKQLVELEEQKKSLTSYMTSLKDA  375 (771)
Q Consensus       344 ~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a  375 (771)
                      ++.+...+..++.++......+...+..|+..
T Consensus       396 l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~  427 (880)
T PRK03918        396 LEKAKEEIEEEISKITARIGELKKEIKELKKA  427 (880)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333445555555555555555555555544

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.45  E-value=2.1e-06  Score=103.75  Aligned_cols=19  Identities=11%  Similarity=-0.104  Sum_probs=11.1

Q ss_pred             CCCCCCCCchHHHHHHHHHH
Q 004160           55 SVNGYGLGEPARILLERLFA   74 (771)
Q Consensus        55 ~~~~~g~~e~ar~llerlf~   74 (771)
                      .+--||.+-|.+.+. .+|.
T Consensus       109 ~~~~n~~~~~~~~~~-~~l~  127 (1164)
T TIGR02169       109 YYYLNGQRVRLSEIH-DFLA  127 (1164)
T ss_pred             eEEECCccccHHHHH-HHHH
Confidence            345567666776554 4555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR00606 rad50 rad50

Probab=99.45  E-value=7e-07  Score=111.54  Aligned_cols=282  Identities=10%  Similarity=0.120  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 004160          346 EQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEEL---QNELNKEKYSLQ  422 (771)
Q Consensus       346 ~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeL---r~qLqkekqeLE  422 (771)
                      .+..-++.|+.+|+..=....+ ..++.+.+.++.....+++.+..++..+.........+|..|   ...+...+-.+.
T Consensus       799 ~ei~~l~~qie~l~~~l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~  877 (1311)
T TIGR00606       799 MELKDVERKIAQQAAKLQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG  877 (1311)
T ss_pred             HHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555544433222222 236677777777777777777666666666666666666666   233333333333


Q ss_pred             HHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          423 QAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELK  502 (771)
Q Consensus       423 elqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELK  502 (771)
                      +.......+..++..+..++.++...+..+..++..+...+..+......+....+....++...-..+...-..+..+.
T Consensus       878 ~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  957 (1311)
T TIGR00606       878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM  957 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334455555555555556666555555555555555555555555544443333222222222111111112222222


Q ss_pred             HHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH------HHHHhhhccCc
Q 004160          503 MIMS------------SREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDL------THKLVISNKND  564 (771)
Q Consensus       503 slIe------------sLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeL------t~eLe~s~~~~  564 (771)
                      ..+.            .++..+..+...+..+...+..+...++.++-.+..+....+.+.++      ..++....   
T Consensus       958 ~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~--- 1034 (1311)
T TIGR00606       958 KDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVE--- 1034 (1311)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            2222            12222222233333333333334444444444444442222222222      22223333   


Q ss_pred             ccCcCCcchHH-hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhh
Q 004160          565 ESSTSMPTDDM-GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGR  636 (771)
Q Consensus       565 ~~dI~qlkdEI-eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~  636 (771)
                       ..|..+...+ ....  ..+..++..+...++.+......+.+.++.++.+|..++.+++-  .+.+.+-.+
T Consensus      1035 -~eI~~l~~~~~~~~~--~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~r 1102 (1311)
T TIGR00606      1035 -EELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEK 1102 (1311)
T ss_pred             -HHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHH
Confidence             3344444444 4445  56677778888888888888888889999999999999998854  444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=99.45  E-value=7.1e-07  Score=106.16  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhh
Q 004160          601 ELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVE  652 (771)
Q Consensus       601 EleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~  652 (771)
                      ++..++..+..++..+..+...+......+...-..++..+.++.+++...+
T Consensus       660 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~  711 (880)
T PRK03918        660 EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK  711 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444443333333333333333333333444433333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.40  E-value=7.5e-06  Score=104.31  Aligned_cols=315  Identities=20%  Similarity=0.229  Sum_probs=157.2

Q ss_pred             HhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004160          219 AKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKL  298 (771)
Q Consensus       219 ~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l  298 (771)
                      +...+|+-.-..-+..=+..+.+-.-.+++|++.|.+..++++.....|.    |+..+-++|.   .++-.-+.+|...
T Consensus      1072 ~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~----K~ek~r~dL~---~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1072 KKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA----KAERQRRDLS---EELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHH
Confidence            33344444444444444455555566677777777777777765554443    3333333322   2233334444444


Q ss_pred             HHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----
Q 004160          299 AEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLK-----  373 (771)
Q Consensus       299 ~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~-----  373 (771)
                      ....+-...-.+.--.+|.+.++-|   +.+-.....-.+..|+.-.+.-..|..|+..+...+.-+..=-.+|.     
T Consensus      1145 ~~~t~~q~e~~~k~e~e~~~l~~~l---eee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~ 1221 (1930)
T KOG0161|consen 1145 GGTTAAQLELNKKREAEVQKLRRDL---EEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIAD 1221 (1930)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444443   33333334444444444444444444444444433333322211111     


Q ss_pred             ---------HHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 004160          374 ---------DAQVEVESER----VKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNT  440 (771)
Q Consensus       374 ---------~a~~e~~~~~----~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelek  440 (771)
                               -+....+..+    ..|..++..+.++.+.+..+..+...+.++.......+++....+..+......+..
T Consensus      1222 l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ 1301 (1930)
T KOG0161|consen 1222 LAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALES 1301 (1930)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence                     1111222222    223333333444444433344445555555555555555555555555555555555


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHH
Q 004160          441 EFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ-LVQAMDTL  519 (771)
Q Consensus       441 ELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq-LeEleeeL  519 (771)
                      .+..+...+..-......+...+.+++.+...+.+.+++-.+-...+.+.+..+..+...-+..++..-.+ .+++.+.-
T Consensus      1302 qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~k 1381 (1930)
T KOG0161|consen 1302 QLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELK 1381 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555566666666666666666666666666666666666666666666666655444 55666666


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHH
Q 004160          520 QEKDEHVLILQNELDGTKLKVSEA  543 (771)
Q Consensus       520 kEkEE~L~~~q~ELNe~nIe~sQq  543 (771)
                      +.+.+.++.++..+...+..+...
T Consensus      1382 k~l~~~lq~~qe~~e~~~~~~~~L 1405 (1930)
T KOG0161|consen 1382 KKLQQRLQELEEQIEAANAKNASL 1405 (1930)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH
Confidence            666666666666666655555555

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.39  E-value=2.9e-06  Score=100.97  Aligned_cols=325  Identities=21%  Similarity=0.270  Sum_probs=197.4

Q ss_pred             hhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHH---Hh-----------------hhhhHHHHHHhhhhHHHH
Q 004160          131 HSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLV---SQ-----------------ARHIEDLKLRLKERDQEI  190 (771)
Q Consensus       131 ~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~---~q-----------------~~~i~~lk~~~~~~~~~~  190 (771)
                      .+++..++..|..--.+...+..-.+.|+++| ++..++-   .+                 -+++.-|.---+....++
T Consensus        52 ~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El  130 (775)
T PF10174_consen   52 AAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQREL  130 (775)
T ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            34444555555444444445555555666666 5544422   11                 234444555555666777


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHH------HHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH-
Q 004160          191 AAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKA------QMLNEANEVVKKQETEIQSLRKVIQEKEEELEAS-  263 (771)
Q Consensus       191 ~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~------~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~-  263 (771)
                      +-+++.+-.-+..|+++++.+-+.++++..+-..|.+|+      ---..++..+.-.++.+..|++.+..++...... 
T Consensus       131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r  210 (775)
T PF10174_consen  131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAR  210 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            788888888888888888888888888888888885442      2224566678888999999999999998877322 


Q ss_pred             -------------------HHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHH
Q 004160          264 -------------------VALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLS  324 (771)
Q Consensus       264 -------------------~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~  324 (771)
                                         ..+-...+-|++..|-+|++       ++.|+-.|.....-...+...+++.       |.
T Consensus       211 ~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~-------le~Ei~~L~~~~~~~~~~r~~~~k~-------le  276 (775)
T PF10174_consen  211 EQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRD-------LEDEIYRLRSRGELSEADRDRLDKQ-------LE  276 (775)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcccccccchHHHHHH-------HH
Confidence                               11111133344444444433       4444444433322222222222111       12


Q ss_pred             HHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          325 DVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMT-SLKDAQVEVESERVKLRVTEARNKELERDLSME  403 (771)
Q Consensus       325 ~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~-~l~~a~~e~~~~~~~l~~aqsE~kELErqLlql  403 (771)
                      ..+|..                                    -+|. -+..+..++..+-.++-.++.++..+.+.....
T Consensus       277 ~~~s~~------------------------------------~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~  320 (775)
T PF10174_consen  277 VYKSHS------------------------------------LAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM  320 (775)
T ss_pred             HHHhhH------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            222222                                    1221 155666666666667777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160          404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE  483 (771)
Q Consensus       404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE  483 (771)
                      ...|..+...+..-++..+.++.++..|..++......+......+.....++..+..++..+++.+......+.-+..+
T Consensus       321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k  400 (775)
T PF10174_consen  321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK  400 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777776666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 004160          484 LSNARQMLEELNNEVRELKMIMS  506 (771)
Q Consensus       484 LeeiqrrLeeLr~ELkELKslIe  506 (771)
                      |..+...+.....++..++..+.
T Consensus       401 ie~Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  401 IENLEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666666666565555555555

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=99.37  E-value=1e-05  Score=101.37  Aligned_cols=197  Identities=14%  Similarity=0.105  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004160          445 TENLLRVKESDLVEAKLEIQNLKSKQASLQL---ILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQE  521 (771)
Q Consensus       445 lekeIeelEnELeeLq~eiEqLKsEIesLq~---ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkE  521 (771)
                      ....+..+..++..++...+.++.+|..++.   .+.....++...-.....+.+++..++..+..+...+.++...+..
T Consensus       834 ~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~  913 (1311)
T TIGR00606       834 KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP  913 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333333333333334444444444444422   2222233333333344444455555555555555555555555555


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHH---HHhhhccCcccCcCCcchHH-hhHhhhhhhhccchhHHHHHH
Q 004160          522 KDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLTH---KLVISNKNDESSTSMPTDDM-GLELMQQGLDKGNDNFRLQTK  596 (771)
Q Consensus       522 kEE~L~~~q~ELNe~nIe~sQq-Etl~eRIeeLt~---eLe~s~~~~~~dI~qlkdEI-eeeL~~qeLekereeLeeel~  596 (771)
                      ....+..++.++..++...... .....++..+..   .|....    ..|..+.+.- ...|  ..+......+...+.
T Consensus       914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~y~~~~~~~qL--~~~e~el~~~~~~ie  987 (1311)
T TIGR00606       914 LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM----KDIENKIQDGKDDYL--KQKETELNTVNAQLE  987 (1311)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHH--HHHHHHHHHHHHHHH
Confidence            5555555555555444333332 122222222221   111111    1221111111 2233  333333334444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH--HhhhhhhHHHHHhH
Q 004160          597 QLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTV--LGRLDAKEKELKKL  647 (771)
Q Consensus       597 eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~--~~~~~~~~~el~~~  647 (771)
                      .++.++..+...++.+..++...+.........|.-.  ...+...+.++..|
T Consensus       988 ~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l 1040 (1311)
T TIGR00606       988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQH 1040 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555554444444444  44445555555555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.34  E-value=1.2e-05  Score=99.61  Aligned_cols=110  Identities=23%  Similarity=0.269  Sum_probs=81.1

Q ss_pred             hHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 004160          232 LNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETND  311 (771)
Q Consensus       232 l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~  311 (771)
                      +...+..+..-..++..++..|...+..+.+...--.--..++...++.++..-..|-....++..|.+.-..-.+...+
T Consensus       385 ~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  464 (1163)
T COG1196         385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE  464 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445556777777777777777777776666777788888888877777778888888888887777777888


Q ss_pred             HHHhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004160          312 TLEDFRRVKKLLSDVRSELVSSQKSLASSR  341 (771)
Q Consensus       312 ~~~df~rv~~ll~~vr~el~~s~~~~~~sr  341 (771)
                      +-.++.++...+.+++.++.+.+..+....
T Consensus       465 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  494 (1163)
T COG1196         465 LERELAELQEELQRLEKELSSLEARLDRLE  494 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888776655543

>PRK01156 chromosome segregation protein; Provisional

Probab=99.30  E-value=1.4e-05  Score=96.00  Aligned_cols=17  Identities=24%  Similarity=0.321  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004160          243 ETEIQSLRKVIQEKEEE  259 (771)
Q Consensus       243 e~~~~~l~~~~~~ke~~  259 (771)
                      +..+++|.+.+.+.+..
T Consensus       255 e~~i~ele~~l~el~~~  271 (895)
T PRK01156        255 ESEIKTAESDLSMELEK  271 (895)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44455555555544443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.28  E-value=3.6e-05  Score=98.39  Aligned_cols=148  Identities=22%  Similarity=0.265  Sum_probs=118.5

Q ss_pred             HHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHH
Q 004160           99 LEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIED  178 (771)
Q Consensus        99 ~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~  178 (771)
                      +..++..-+..-..|++||.+|.....++-..+.-++........-+..|..+....+.-+....++.+....-+.++++
T Consensus      1057 ~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666678999999999999999999999999998888888888888888888888888888888888999999


Q ss_pred             HHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHH----HhHHHhHHHHHhHHHH
Q 004160          179 LKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQ----MLNEANEVVKKQETEI  246 (771)
Q Consensus       179 lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~----~l~~an~~~~~qe~~~  246 (771)
                      |+..++++...+.+...+=+.++.|+.+|+.++-.....-...-.+++.+-+    -|....+-.++..+.+
T Consensus      1137 l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~l 1208 (1930)
T KOG0161|consen 1137 LKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKL 1208 (1930)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877666665566654432    3444444444444333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.16  E-value=9.6e-05  Score=91.86  Aligned_cols=255  Identities=24%  Similarity=0.273  Sum_probs=129.1

Q ss_pred             cCCCCccccccccCCcceeeccccc-cccc-cchhhhcCCCCCCCC---------------CC-----CCCCchHHHHHH
Q 004160           13 HLNPNPKVHWKHKLPGRYVTSGKRR-VRSL-GLVRAVLPDGKKSSV---------------NG-----YGLGEPARILLE   70 (771)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~sv~~~~~~~~~---------------~~-----~g~~e~ar~lle   70 (771)
                      +|.-+|..+.|.+..--+.|.+..- +++. ..|.=|+++..+...               |+     ||-+-+.+ =+.
T Consensus        47 VLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V~l~fdN~d~~~~~~~~ei~v~Rri~r~g~S~Y~INg~~~~~~-dI~  125 (1163)
T COG1196          47 VLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEVELTFDNSDNTLPLEYEEISVTRRIYRDGESEYYINGEKVRLK-DIQ  125 (1163)
T ss_pred             HhCcchhhhhhccCCcceeeCCCCCCCCCCceEEEEEEeCCCCcCCcccceEEEEEEEEEcCCcEEEECCcEeeHH-HHH
Confidence            4555556667777655555555444 3322 557666766620000               11     44444555 356


Q ss_pred             HHHHhhhhhhhhccCCCC--CCc-cc-----ccCchHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHH
Q 004160           71 RLFAQTQKLEERMSRDSG--VGK-DV-----QFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELL  142 (771)
Q Consensus        71 rlf~~t~~l~~~~~~~~~--l~~-~~-----~~~~~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~  142 (771)
                      -||+     +.|.+.++.  +|- +|     ..+.....|=.|.-..+..-+++++    |+       .+|.+|.+-|+
T Consensus       126 ~l~~-----~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~e----a~-------~~L~~~~~nl~  189 (1163)
T COG1196         126 DLLA-----DSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEE----AE-------RKLERTEENLE  189 (1163)
T ss_pred             HHHH-----hcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHH----HH-------HHHHHHHHHHH
Confidence            7888     666666555  221 22     1222233333333333333333332    22       23555555566


Q ss_pred             HhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhh----hhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHH
Q 004160          143 RREREIDVACSRHEKLEEELGQSNLKLVSQAR----HIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEA  218 (771)
Q Consensus       143 ~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~----~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~  218 (771)
                      +.+..+..-....++|+.+-..|.+.+-.++.    +..-+-..+..-..++......++..+.+++.+...+-....+.
T Consensus       190 ~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i  269 (1163)
T COG1196         190 RLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEI  269 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65555555555666666666666555444331    11222334455556677777777777777777777777777777


Q ss_pred             HhHHHHHhhHHHHhHHHhHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 004160          219 AKIDSELKSKAQMLNEANEV-------VKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKR  284 (771)
Q Consensus       219 ~~~~~e~~~k~~~l~~an~~-------~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~  284 (771)
                      ...+.++......+.....-       +...+.++.-++..+.....++.....-...-..++...++.++..
T Consensus       270 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (1163)
T COG1196         270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER  342 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776666655554444222       3333444444444444444443333333333344555555555554

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.00  E-value=0.00026  Score=84.68  Aligned_cols=242  Identities=20%  Similarity=0.291  Sum_probs=110.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hhh--HHhhhHHHhH
Q 004160          240 KKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEAS-RRM--EETNDTLEDF  316 (771)
Q Consensus       240 ~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~-k~~--~~~~~~~~df  316 (771)
                      -.....+..|+.+..+-.-++..+-       .++..++..++++-...-.++.++.+|.+..- +..  ....++-.-+
T Consensus       110 d~~~~q~~rl~~E~er~~~El~~lr-------~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~  182 (775)
T PF10174_consen  110 DKAQEQFERLQAERERLQRELERLR-------KTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEAL  182 (775)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHH
Confidence            3344445555555444444444432       57788899999999999999999999998541 100  0011111123


Q ss_pred             HHHHHH---HHHHHHHHhhhhhHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHH
Q 004160          317 RRVKKL---LSDVRSELVSSQKSLASSRKQMEEQ------EHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLR  387 (771)
Q Consensus       317 ~rv~~l---l~~vr~el~~s~~~~~~sr~~~e~q------~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~  387 (771)
                      +|+..+   +...++-|----+.....|.++.-.      ...-+.=..-|..-=..+.+|..+|.+++.||..=+..+.
T Consensus       183 ~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~  262 (775)
T PF10174_consen  183 RRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE  262 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            333322   1111111111111111112211111      0000011122233334567777777777777665544443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160          388 VTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLK  467 (771)
Q Consensus       388 ~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLK  467 (771)
                      .+...-..+...+......-.-+.+.++..+..|.....++..++..+..+.+...+...+|..+...+.....+-+.|+
T Consensus       263 ~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lq  342 (775)
T PF10174_consen  263 LSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQ  342 (775)
T ss_pred             ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333323333333333333333444444444444445555555555555555555555555555555444444444


Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 004160          468 SKQASLQLILEEKDFELSNAR  488 (771)
Q Consensus       468 sEIesLq~ELEEIdeELeeiq  488 (771)
                      +.+..+..++++....+....
T Consensus       343 sdve~Lr~rle~k~~~l~kk~  363 (775)
T PF10174_consen  343 SDVEALRFRLEEKNSQLEKKQ  363 (775)
T ss_pred             HhHHHHHHHHHHHHHHHHHHH
Confidence            444444444444443333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.85  E-value=0.0015  Score=83.29  Aligned_cols=494  Identities=20%  Similarity=0.235  Sum_probs=259.4

Q ss_pred             HHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHH-----------------------------HhHHHHHHHHHhhH
Q 004160          106 LQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELL-----------------------------RREREIDVACSRHE  156 (771)
Q Consensus       106 ~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~-----------------------------~re~~i~~a~~~~~  156 (771)
                      +++-+..||+--+=|..++.+...|...|-.-+..|-                             .-++++.++..+.+
T Consensus       743 le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq  822 (1822)
T KOG4674|consen  743 LEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQ  822 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566776666677777777766655544433332                             22233333333333


Q ss_pred             HHHHHHhhhhHHHHHhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHh
Q 004160          157 KLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEAN  236 (771)
Q Consensus       157 ~~e~~l~~~~~~l~~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an  236 (771)
                      ++...+.....++-   .++++++-+|++-...+.++...|+.+..++++|.+.+-.=++.+..+.....-..+=  .+|
T Consensus       823 ~~~~~~r~l~~~~~---~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~--~~~  897 (1822)
T KOG4674|consen  823 EKSSDLRELTNSLE---KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSK--SSN  897 (1822)
T ss_pred             HHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc--chh
Confidence            33333333333333   2344666677777777777777777777777776665544444333332222211110  224


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhH
Q 004160          237 EVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDF  316 (771)
Q Consensus       237 ~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df  316 (771)
                      +.+..-.-+++-....+..-              .++|+-+..+.+           +++....-.+..          .
T Consensus       898 ~d~~~~~~~Lr~~~eq~~~l--------------~~~L~~a~s~i~-----------~yqe~~~s~eqs----------l  942 (1822)
T KOG4674|consen  898 EDATILEDTLRKELEEITDL--------------KEELTDALSQIR-----------EYQEEYSSLEQS----------L  942 (1822)
T ss_pred             hhhhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHH-----------HHHHHHHHHHHH----------H
Confidence            44443333322111111111              122222222211           222222222222          2


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHH-------HHH
Q 004160          317 RRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKL-------RVT  389 (771)
Q Consensus       317 ~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l-------~~a  389 (771)
                      .+|++=|+.+|.++.+....+.-=.-..|+--..|+.+...|.++.             ...+.+++.++       ..+
T Consensus       943 ~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~-------------~~~~k~~e~~~~~~~~e~~sl 1009 (1822)
T KOG4674|consen  943 ESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREEL-------------ELSTKGKEDKLLDLSREISSL 1009 (1822)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccccchhhhHHHHHHHhHHH
Confidence            3455666666666666666655544455555556666666666654             22333333333       334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160          390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK  469 (771)
Q Consensus       390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE  469 (771)
                      +.++..+...+.++...+..+++.+.....-+...+.+..+---       .+......+..+..++..+......++..
T Consensus      1010 ~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~-------~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~ 1082 (1822)
T KOG4674|consen 1010 QNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELV-------QHADLTQKLIKLREEFAKCNDELLKLKKS 1082 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45555555555555555555555555544333333333222211       22222333333333333333333333333


Q ss_pred             HHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHH
Q 004160          470 QASLQ-----------LILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ------------LVQAMDTLQEKDEHV  526 (771)
Q Consensus       470 IesLq-----------~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq------------LeEleeeLkEkEE~L  526 (771)
                      .....           .....+..++.....++..+..+...+-.+++.+-..            ..++..=+..+....
T Consensus      1083 ~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ek 1162 (1822)
T KOG4674|consen 1083 RESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEK 1162 (1822)
T ss_pred             HHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHH
Confidence            33222           2333455555555666666666666666666555444            334555566666666


Q ss_pred             HHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhhhccCcccCcCCcc----hHH---hhHhhhhhhhccchhHHHHH
Q 004160          527 LILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVISNKNDESSTSMPT----DDM---GLELMQQGLDKGNDNFRLQT  595 (771)
Q Consensus       527 ~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~s~~~~~~dI~qlk----dEI---eeeL~~qeLekereeLeeel  595 (771)
                      ..+..+|+-++.....+    ..+..-|.++...|..+...  .+.+-..    ..+   ...+  ..|...--.+++..
T Consensus      1163 ei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~--~q~~a~s~~e~~~i~~~v~~v--Nll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1163 EIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS--SQKSAVSDDEHKEILEKVEEV--NLLRESNKVLREEN 1238 (1822)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccchhhhhhhhHHHHHHHHH--HHHHHhHHHHHHHH
Confidence            66666666665555544    56666777777777664411  1111111    122   4455  55666667788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH----Hhhh-----hChhhHHHHHHH
Q 004160          596 KQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL----EETV-----EDANDLRKLYAL  663 (771)
Q Consensus       596 ~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~----~~~~-----~d~~d~~~~~~~  663 (771)
                      ......+.+++..++.+++++.-++..++..+.++-++..-+...+.|-+..    ..++     -||+|+++|-+-
T Consensus      1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999888887777666665543    3333     268999988763

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.83  E-value=0.0007  Score=77.96  Aligned_cols=177  Identities=27%  Similarity=0.326  Sum_probs=90.4

Q ss_pred             HHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHH---Hhhhhh
Q 004160          100 EILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLV---SQARHI  176 (771)
Q Consensus       100 ~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~---~q~~~i  176 (771)
                      ...+.+|..+-..|.+=.++|..||+.=.-=...|..||.-.+.--..|..+...       -..|..+.-   .++.+.
T Consensus        30 ~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~-------~~~a~~~~e~~k~r~~e~  102 (522)
T PF05701_consen   30 KEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAE-------EKQAEEDSELAKFRAKEL  102 (522)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHhHHHHHHH
Confidence            3456677777778888888888888876666666666665554444444433322       222211111   122211


Q ss_pred             HHHHHHhhh-----hHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHH---HHhHHHHHH
Q 004160          177 EDLKLRLKE-----RDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVV---KKQETEIQS  248 (771)
Q Consensus       177 ~~lk~~~~~-----~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~---~~qe~~~~~  248 (771)
                      +.   -..+     -..++.+++.-...-..+++..|+++-+-..+.+....+   |..-+.+|=+++   .--...+.+
T Consensus       103 e~---~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~---k~~A~~~aeea~~~a~~~~~kve~  176 (522)
T PF05701_consen  103 EQ---GIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDA---KNAALKQAEEAVSAAEENEEKVEE  176 (522)
T ss_pred             hh---hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   1100     223344444444444455555555554444444443332   444444444433   334455677


Q ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhhHHHHHH
Q 004160          249 LRKVIQEKEEELEASVAL-RKVEEEKLKVVEANLEKRTMEWLL  290 (771)
Q Consensus       249 l~~~~~~ke~~~~~~~~~-~k~~~ekl~~~e~~le~~~~~wl~  290 (771)
                      |..+|..--+.|.-+... ..+++++..+. ...+.....|-.
T Consensus       177 L~~Ei~~lke~l~~~~~a~~eAeee~~~~~-~~~~~~~~~~~~  218 (522)
T PF05701_consen  177 LSKEIIALKESLESAKLAHIEAEEERIEIA-AEREQDAEEWEK  218 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            888887777777766443 33444444433 444455556654

Several sequences in this family are described as being myosin heavy chain-like.

>PRK01156 chromosome segregation protein; Provisional

Probab=98.71  E-value=0.0025  Score=77.14  Aligned_cols=32  Identities=9%  Similarity=0.166  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHH
Q 004160          347 QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE  378 (771)
Q Consensus       347 q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e  378 (771)
                      .-..|.+.+.+|......+.+.+..|+.|.-+
T Consensus       417 ~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~  448 (895)
T PRK01156        417 KLQDISSKVSSLNQRIRALRENLDELSRNMEM  448 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33456666667776666677666667766443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.59  E-value=0.0081  Score=76.95  Aligned_cols=454  Identities=22%  Similarity=0.235  Sum_probs=221.8

Q ss_pred             HHHhHhhHHHHHHHHH----hhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhH-------
Q 004160           99 LEILESDLQAVLAALK----KKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNL-------  167 (771)
Q Consensus        99 ~~~l~s~~~~~l~~l~----~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~-------  167 (771)
                      +..|+++|+.--.-+|    ....+|.+|=+.|-.-...+..++.+|.--..+|...-++-..|++.|+...-       
T Consensus       814 l~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~  893 (1822)
T KOG4674|consen  814 LQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDS  893 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Confidence            4444444444333332    34455666666777777777777777777777777777777777777654321       


Q ss_pred             -----HH---HHhh----hhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH-------hhHHHHhHHHHHhhH
Q 004160          168 -----KL---VSQA----RHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLK-------KSEEAAKIDSELKSK  228 (771)
Q Consensus       168 -----~l---~~q~----~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~-------k~~e~~~~~~e~~~k  228 (771)
                           +.   +...    -+|+.|+-.|...-.+|-..+...+.-+.=+..|+..+-.       +-+......+.+..+
T Consensus       894 ~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~  973 (1822)
T KOG4674|consen  894 KSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEE  973 (1822)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                 11   1111    2455666666666666666666655555555555544332       222222222222222


Q ss_pred             HHHhHHHhHHHH--------H-------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004160          229 AQMLNEANEVVK--------K-------QETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQD  293 (771)
Q Consensus       229 ~~~l~~an~~~~--------~-------qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~  293 (771)
                      -..|..=++...        -       .-.++.-|++..+...       ....--..++.....+|.+++.-|=.||.
T Consensus       974 ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~-------~~~s~~~~~~~~~k~dl~~~~~~~~~a~~ 1046 (1822)
T KOG4674|consen  974 LSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLL-------KAASQANEQIEDLQNDLKTETEQLRKAQS 1046 (1822)
T ss_pred             HHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111211111111        0       1112222222222211       11122223444555667777777777664


Q ss_pred             HHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHH
Q 004160          294 ALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVEL-------EEQKKSLT  366 (771)
Q Consensus       294 elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el-------~~q~~~~~  366 (771)
                      .--.=--.-+......-.+-++|-.+..=+...++..-+-+..+..--+.+.++..-|..++.++       ..|=+++.
T Consensus      1047 ~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh 1126 (1822)
T KOG4674|consen 1047 KYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLH 1126 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32221111122223334455666666666666666655555555544444444444444444433       33333333


Q ss_pred             HHHhhhHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          367 SYMTSLKDA-----------------------QVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQ  423 (771)
Q Consensus       367 s~~~~l~~a-----------------------~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEe  423 (771)
                      +-...+-+.                       +-|-+.=.+++..++.++..|.++..-....|.+++..+...+...+.
T Consensus      1127 ~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~ 1206 (1822)
T KOG4674|consen 1127 DQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQK 1206 (1822)
T ss_pred             HHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            332222222                       011122235566667777777777777777777777777666655511


Q ss_pred             ----------HH----------HHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160          424 ----------AI----------DEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE  483 (771)
Q Consensus       424 ----------lq----------eEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE  483 (771)
                                +.          +.=.-|+++.......+.++...++.++.++..++..+.+++.++......+..+...
T Consensus      1207 ~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e 1286 (1822)
T KOG4674|consen 1207 SAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEE 1286 (1822)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      11          1112233444444455555556666666666666666666666665555555555555


Q ss_pred             HHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhhHHHHHHHHHHHH
Q 004160          484 LSNARQMLEELNN--------EVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ----NELDGTKLKVSEAETVVEQIV  551 (771)
Q Consensus       484 LeeiqrrLeeLr~--------ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q----~ELNe~nIe~sQqEtl~eRIe  551 (771)
                      -..=..+-.++..        .+..|++.+..+++.+......+.+....+..++    ..++..+..........+++.
T Consensus      1287 ~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1287 NDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLE 1366 (1822)
T ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444432        2445555555555555555555555554444444    344444444444444555555


Q ss_pred             HHHHHHhh
Q 004160          552 DLTHKLVI  559 (771)
Q Consensus       552 eLt~eLe~  559 (771)
                      ++..+|..
T Consensus      1367 ~~~~rL~~ 1374 (1822)
T KOG4674|consen 1367 DLKTRLAA 1374 (1822)
T ss_pred             HHHHHHHH
Confidence            55555554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.45  E-value=0.00019  Score=74.59  Aligned_cols=18  Identities=33%  Similarity=0.381  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 004160          544 ETVVEQIVDLTHKLVISN  561 (771)
Q Consensus       544 Etl~eRIeeLt~eLe~s~  561 (771)
                      ..+..+|..++.+|..+.
T Consensus       172 ~~~e~~i~~L~~~lkeaE  189 (237)
T PF00261_consen  172 DEYEEKIRDLEEKLKEAE  189 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344455555555555433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.39  E-value=0.021  Score=71.99  Aligned_cols=23  Identities=22%  Similarity=0.172  Sum_probs=16.2

Q ss_pred             ceeeccccccccccchhhhcCCC
Q 004160           29 RYVTSGKRRVRSLGLVRAVLPDG   51 (771)
Q Consensus        29 ~~~~~~~~~~~~~~~v~sv~~~~   51 (771)
                      .++..+.+..|-|++|.+|+++.
T Consensus       172 SL~~s~~~~~hI~kli~~vln~~  194 (1201)
T PF12128_consen  172 SLCESSHQYQHIEKLINAVLNKK  194 (1201)
T ss_pred             CcCCCcccccChHHHHHHHHhcc
Confidence            33335567888889998887765

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.32  E-value=0.0013  Score=69.88  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHH
Q 004160          605 ARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKEL  644 (771)
Q Consensus       605 lReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el  644 (771)
                      +...|..++.+|..++..++..-.|....|.-.=+.+.|+
T Consensus       260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EI  299 (312)
T PF00038_consen  260 YQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEI  299 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3344444555555555555544444444444433333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.31  E-value=0.025  Score=69.50  Aligned_cols=203  Identities=21%  Similarity=0.348  Sum_probs=134.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160          192 AMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEE  271 (771)
Q Consensus       192 ~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~  271 (771)
                      ++++-|+-..   .+++=.+|=|.-.+..|+.=+-+=...+.+|++.|..-+.+|..+...|.+.++-+..++.+-...+
T Consensus       186 ~aR~FL~~~~---p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~  262 (1074)
T KOG0250|consen  186 AARSFLANSN---PKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKE  262 (1074)
T ss_pred             HHHHHHhcCC---hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555443   3567788999999999999999999999999999999999999999999999999998877766554


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Q 004160          272 EKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLL  351 (771)
Q Consensus       272 ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l  351 (771)
                      ....      =+--|.|..+=.          +.. +.++..+.|+....=.+.+...+-.-+......|..+-+-+.++
T Consensus       263 ~l~~------Lk~k~~W~~V~~----------~~~-ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i  325 (1074)
T KOG0250|consen  263 NLEQ------LKAKMAWAWVNE----------VER-QLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKI  325 (1074)
T ss_pred             HHHH------HHHHHHHHHHHH----------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            3321      133477765421          111 12233344444444455555666666777888898888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          352 GKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNEL  414 (771)
Q Consensus       352 ~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qL  414 (771)
                      ..-..|-..|..-++..-.++.++.-++.--..+.+.+...+..+...+-.+++.|+.++.+.
T Consensus       326 ~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~  388 (1074)
T KOG0250|consen  326 GELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT  388 (1074)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887788777877777776666666665544444444444444444444444444444443333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.30  E-value=0.003  Score=65.81  Aligned_cols=218  Identities=17%  Similarity=0.217  Sum_probs=104.1

Q ss_pred             HHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          324 SDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSME  403 (771)
Q Consensus       324 ~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlql  403 (771)
                      ..++.++--....+.....++.+....+..--+++..-..-+......|..+...+..-..+|..+.....+.++.+-.+
T Consensus         4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l   83 (237)
T PF00261_consen    4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL   83 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555666555555555555555555555556666666666655555556665555555555555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160          404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE  483 (771)
Q Consensus       404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE  483 (771)
                      ++........+..++..+.............+......+..++..+...+.....+..++..+..++..+.+.+..+...
T Consensus        84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~  163 (237)
T PF00261_consen   84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEAS  163 (237)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence            44444444444444444444433333333333333333333333333333333444444444444444444444443333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004160          484 LSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS  541 (771)
Q Consensus       484 LeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~s  541 (771)
                      -.....+.+.....+..|...+...+.....+...+..++..+..+.+.|...+-.+.
T Consensus       164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~  221 (237)
T PF00261_consen  164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK  221 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.26  E-value=0.011  Score=68.66  Aligned_cols=47  Identities=21%  Similarity=0.270  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH
Q 004160          601 ELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL  647 (771)
Q Consensus       601 EleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~  647 (771)
                      .+-+.+..|.++...++-+++++.-.-+|=..++.-.-..+..|+++
T Consensus       411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555555555555555555444333333333333334455555

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.25  E-value=0.022  Score=66.21  Aligned_cols=164  Identities=20%  Similarity=0.332  Sum_probs=92.0

Q ss_pred             HHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHH
Q 004160          179 LKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEE  258 (771)
Q Consensus       179 lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~  258 (771)
                      |+..+..-..++..++..|+....++++++...-........+..|...-..-+.++..-|.+.+.++..|.....+.+.
T Consensus       162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~  241 (546)
T PF07888_consen  162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEK  241 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566777788888888888888765443333333333333332222344555555555556555555544443


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHH
Q 004160          259 ELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLA  338 (771)
Q Consensus       259 ~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~  338 (771)
                      .+.....           ..+++|...       .+||   +....-+...+.....+.+...=++..+.+|...+..+.
T Consensus       242 ~~~~lk~-----------~~~elEq~~-------~eLk---~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lq  300 (546)
T PF07888_consen  242 ELDKLKE-----------LKAELEQLE-------AELK---QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQ  300 (546)
T ss_pred             HHHHHHH-----------HHHHHHHHH-------HHHH---HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3333222           222222211       1111   111122334444444555666667889999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          339 SSRKQMEEQEHLLGKQLVELEEQKKSLTS  367 (771)
Q Consensus       339 ~sr~~~e~q~~~l~~q~~el~~q~~~~~s  367 (771)
                      .|+.    +...|.+.+..+...|.--|+
T Consensus       301 aSqq----~~~~L~~EL~~~~~~RDrt~a  325 (546)
T PF07888_consen  301 ASQQ----EAELLRKELSDAVNVRDRTMA  325 (546)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            9974    566888888999888865554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.23  E-value=0.052  Score=69.75  Aligned_cols=46  Identities=15%  Similarity=0.153  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHH
Q 004160          285 TMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSEL  330 (771)
Q Consensus       285 ~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el  330 (771)
                      +-+|+....|.-.+-++|++......++...+..+..-|..|..++
T Consensus       271 aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL  316 (1486)
T PRK04863        271 AADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAREL  316 (1486)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999998877777777777666666666665555

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.22  E-value=0.031  Score=66.76  Aligned_cols=268  Identities=21%  Similarity=0.198  Sum_probs=150.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHH
Q 004160          238 VVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFR  317 (771)
Q Consensus       238 ~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~  317 (771)
                      ..+.-+..|..||....+.|-++-..-+.+-.-+..+|.++-+||--|.       +|-+|.+..|-+.++|--..+|++
T Consensus       100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s-------rlh~le~eLsAk~~eIf~~~~~L~  172 (1265)
T KOG0976|consen  100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS-------RLHKLEDELSAKAHDIFMIGEDLH  172 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHhhhhHHHHHHHHHHh
Confidence            4455667788999999999999999999999999999999999987654       577888888888888888888887


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH-------------HHHHHHHHH-------HHHHHHHHHHhhhHHHhH
Q 004160          318 RVKKLLSDVRSELVSSQKSLASSRKQMEEQEHL-------------LGKQLVELE-------EQKKSLTSYMTSLKDAQV  377 (771)
Q Consensus       318 rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~-------------l~~q~~el~-------~q~~~~~s~~~~l~~a~~  377 (771)
                      -----|++.++++.---.--+.-.++.++...+             +-.+.+++.       -|=.+-.-||+-|+-.=.
T Consensus       173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s  252 (1265)
T KOG0976|consen  173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCS  252 (1265)
T ss_pred             hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhH
Confidence            777778888888765444444444444433332             222333321       111222234444432222


Q ss_pred             HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 004160          378 EVES-----------ERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETE  446 (771)
Q Consensus       378 e~~~-----------~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqEle  446 (771)
                      -|+.           =..+.|+.+.-+..|...+++.+..+-.++..++.+++.......++..-.+   -+..+..+..
T Consensus       253 ~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatk---ylh~enmklt  329 (1265)
T KOG0976|consen  253 MIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATK---YLHLENMKLT  329 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH---HHHHHHHHHH
Confidence            2211           1234566666677777788888888888888888887776554443322111   1122233333


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160          447 NLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQA  515 (771)
Q Consensus       447 keIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEl  515 (771)
                      ..+..++..+-+.+.+.+-+-..++.+++...........++..+.....++..|..+...++.++.++
T Consensus       330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidel  398 (1265)
T KOG0976|consen  330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDEL  398 (1265)
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333433333333333333333333333333333333333333333333333333333333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.13  E-value=0.0076  Score=73.77  Aligned_cols=171  Identities=19%  Similarity=0.322  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Q 004160          362 KKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYS-----LQQAIDEVSSLQEELG  436 (771)
Q Consensus       362 ~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqe-----LEelqeEIesLQeELq  436 (771)
                      +.+..++|.++..|+..|.-....+-....++.+.+..+-.++. ++.+..++..++..     +.....+...+..++.
T Consensus       213 ~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~  291 (1074)
T KOG0250|consen  213 TESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-LEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIK  291 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777888888888887777777776666666666665554432 22333333333322     1233333333334444


Q ss_pred             HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160          437 RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAM  516 (771)
Q Consensus       437 elekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEle  516 (771)
                      .++..+..++..+........++..++...+..+..+..+...-+.++..+...++.++-++..++..+...+..+.+..
T Consensus       292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k  371 (1074)
T KOG0250|consen  292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLK  371 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444455555555555555555556666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 004160          517 DTLQEKDEHVLILQNEL  533 (771)
Q Consensus       517 eeLkEkEE~L~~~q~EL  533 (771)
                      ..+..++.+|..+..++
T Consensus       372 ~~~d~l~k~I~~~~~~~  388 (1074)
T KOG0250|consen  372 KEVDRLEKQIADLEKQT  388 (1074)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666555555555555

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.11  E-value=0.022  Score=60.70  Aligned_cols=51  Identities=24%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 004160          583 GLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTV  633 (771)
Q Consensus       583 eLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~  633 (771)
                      .+......+...+..++.++..++..+...-.+...+..-+-..|-|+.+-
T Consensus       252 ~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatY  302 (312)
T PF00038_consen  252 RLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATY  302 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            334444666677777777777777777777777777777777777777653

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.11  E-value=0.069  Score=68.68  Aligned_cols=173  Identities=16%  Similarity=0.164  Sum_probs=82.5

Q ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 004160          370 TSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL  449 (771)
Q Consensus       370 ~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeI  449 (771)
                      ...+.|.-.++....++..+.....++..++..+++++..+...+.-... ......++..+...+..+...+.+....+
T Consensus       293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l~~~LeELee~Lee~eeeL  371 (1486)
T PRK04863        293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERYQADLEELEERLEEQNEVV  371 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555566666666666666666666666666666655554443332 12223334444444444444444444444


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HhHHHHHHHHHHHH
Q 004160          450 RVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVREL---KMIM-------SSREEQLVQAMDTL  519 (771)
Q Consensus       450 eelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkEL---KslI-------esLEgqLeEleeeL  519 (771)
                      ......+..+..++..++.++..++..+.++...+...+.++......+..+   +...       +++++.+..+...+
T Consensus       372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~akl  451 (1486)
T PRK04863        372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKE  451 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444443333322222   2221       33555555555555


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHH
Q 004160          520 QEKDEHVLILQNELDGTKLKVSEA  543 (771)
Q Consensus       520 kEkEE~L~~~q~ELNe~nIe~sQq  543 (771)
                      .++...+..++.+++..+....+.
T Consensus       452 ee~e~qL~elE~kL~~lea~leql  475 (1486)
T PRK04863        452 QEATEELLSLEQKLSVAQAAHSQF  475 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555444

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.08  E-value=0.0054  Score=69.89  Aligned_cols=9  Identities=22%  Similarity=0.449  Sum_probs=5.9

Q ss_pred             CCCCCCchH
Q 004160           57 NGYGLGEPA   65 (771)
Q Consensus        57 ~~~g~~e~a   65 (771)
                      |+||++=+.
T Consensus        34 G~NG~GKSt   42 (562)
T PHA02562         34 GKNGAGKST   42 (562)
T ss_pred             CCCCCCHHH
Confidence            667777654

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.02  E-value=0.012  Score=67.19  Aligned_cols=16  Identities=19%  Similarity=0.401  Sum_probs=7.0

Q ss_pred             CcccCCCCc-ccccccc
Q 004160           10 NHLHLNPNP-KVHWKHK   25 (771)
Q Consensus        10 ~~~~~~~~~-~~~~~~~   25 (771)
                      |+..|...| .++|...
T Consensus        11 nf~s~~~~~~~i~f~~~   27 (562)
T PHA02562         11 NILSVGNQPIEIQLDKV   27 (562)
T ss_pred             cccccCCCceEEEEcCC
Confidence            333444333 3456543

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=0.04  Score=68.09  Aligned_cols=302  Identities=19%  Similarity=0.186  Sum_probs=190.2

Q ss_pred             hHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHH
Q 004160          311 DTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTE  390 (771)
Q Consensus       311 ~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aq  390 (771)
                      .-|+.|.+==..|+++|++-..+-+--              .+-...|+.-+...+.|+.-             +.....
T Consensus       267 ~~I~~~~~rv~~L~e~~sek~~~~k~~--------------e~ek~~lE~~k~~al~fL~k-------------enel~~  319 (1293)
T KOG0996|consen  267 EPIEELMRRVERLNEDRSEKENRVKLV--------------EKEKKALEGPKNEALEFLKK-------------ENELFR  319 (1293)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHH--------------HHHHHHHhhhHHHHHHHHHH-------------HHHHHH
Confidence            447778887888999999876543322              23334556666777777642             122233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160          391 ARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE-TENLLRVKESDLVEAKLEIQNLKSK  469 (771)
Q Consensus       391 sE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqE-lekeIeelEnELeeLq~eiEqLKsE  469 (771)
                      -..+-++..++....+|...+..+.+.+..+......+.....+..++...+.. +........+...+++.+...+..+
T Consensus       320 ~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~  399 (1293)
T KOG0996|consen  320 KKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLERE  399 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666777777777777777777777666666444444443333333 5555556666666777777777666


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHH
Q 004160          470 QASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVE  548 (771)
Q Consensus       470 IesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-Etl~e  548 (771)
                      -...+..+.....++..+...++....+...+....+.....+.+.++.+..+.+.+...+..|.+....+.+- +-...
T Consensus       400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~  479 (1293)
T KOG0996|consen  400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE  479 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            66666666666666666666666666666666666667777777777777777777777777777776666665 56666


Q ss_pred             HHHHHHHHHhhhccCcccCcCCcchHH---hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004160          549 QIVDLTHKLVISNKNDESSTSMPTDDM---GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTV  625 (771)
Q Consensus       549 RIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~  625 (771)
                      .|.++..+|....    .+++....++   +.+|  .-|..........+..+.+.+..+...+.+.-..|..+...+..
T Consensus       480 e~~~~ekel~~~~----~~~n~~~~e~~vaesel--~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~  553 (1293)
T KOG0996|consen  480 EIEKLEKELMPLL----KQVNEARSELDVAESEL--DILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPS  553 (1293)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            6777777776655    4455555444   5666  55555555555666666666666666666666666666666666


Q ss_pred             chHHHHHHHhhhhhhHHHHH
Q 004160          626 KDEELKTVLGRLDAKEKELK  645 (771)
Q Consensus       626 kd~elk~~~~~~~~~~~el~  645 (771)
                      .-.|++.+-.-++..-++.+
T Consensus       554 ~k~e~~~~~k~l~~~~~e~~  573 (1293)
T KOG0996|consen  554 LKQELKEKEKELPKLRKEER  573 (1293)
T ss_pred             HHHHHHHHHHhHHHHHHHHH
Confidence            66666655555544444443

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.91  E-value=0.092  Score=60.91  Aligned_cols=90  Identities=22%  Similarity=0.280  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160          390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK  469 (771)
Q Consensus       390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE  469 (771)
                      ..++.+....+-....++..++.....++.+|+....++..+++........+..+...+.....++..+.......+..
T Consensus       287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~  366 (522)
T PF05701_consen  287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA  366 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence            33333333333334444444444444444444444444444444433333334444444444444444443333333333


Q ss_pred             HHHHHHHHHh
Q 004160          470 QASLQLILEE  479 (771)
Q Consensus       470 IesLq~ELEE  479 (771)
                      ...+...++.
T Consensus       367 ~~~l~~~Lqq  376 (522)
T PF05701_consen  367 MSELPKALQQ  376 (522)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.03  Score=66.68  Aligned_cols=216  Identities=17%  Similarity=0.203  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160          383 RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE  462 (771)
Q Consensus       383 ~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e  462 (771)
                      +-.-+.+..+--+-++++--...++.++.++..+.+...-.+......|+.++..++..+.++..++...+-.+...+..
T Consensus       394 eie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~  473 (1118)
T KOG1029|consen  394 EIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTE  473 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence            33334444555566677777788888888888888888887777888888888888888888888888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 004160          463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREE-------QLVQAMDTLQEKDEHVLILQNELDG  535 (771)
Q Consensus       463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEg-------qLeEleeeLkEkEE~L~~~q~ELNe  535 (771)
                      ++.+..+++....++..+..+|.+.+.++..+-+|...|..++...+.       ...++...+..++...+.+.+++.+
T Consensus       474 ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqlde  553 (1118)
T KOG1029|consen  474 IEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDE  553 (1118)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777777777777777777777777777776766666666555432       2444444444444444333333322


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          536 TKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEME  615 (771)
Q Consensus       536 ~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~e  615 (771)
                                +...++.-.+++.++.               .++     .+-+..+..++-..+..|..-+..+.+.+..
T Consensus       554 ----------lskE~esk~~eidi~n---------------~ql-----kelk~~~~~q~lake~~yk~e~d~~ke~et~  603 (1118)
T KOG1029|consen  554 ----------LSKETESKLNEIDIFN---------------NQL-----KELKEDVNSQQLAKEELYKNERDKLKEAETK  603 (1118)
T ss_pred             ----------HHHHHHHHHHhhhhHH---------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1122222222222211               222     2223555566666777777788888888888


Q ss_pred             HHHHHHhcccchH
Q 004160          616 VLAAKRALTVKDE  628 (771)
Q Consensus       616 LrelrRaL~~kd~  628 (771)
                      ..++...+..++.
T Consensus       604 ~lel~~~ke~e~~  616 (1118)
T KOG1029|consen  604 ALELIGEKEAESA  616 (1118)
T ss_pred             HHHHHhhhhhccc
Confidence            8888777766553

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.88  E-value=0.15  Score=62.61  Aligned_cols=46  Identities=26%  Similarity=0.417  Sum_probs=23.5

Q ss_pred             HHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160          218 AAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEAS  263 (771)
Q Consensus       218 ~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~  263 (771)
                      .....+++......+..+++-+......+..+...+.+....+...
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~  436 (908)
T COG0419         391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKL  436 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555555555544444433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.88  E-value=0.15  Score=62.57  Aligned_cols=420  Identities=19%  Similarity=0.207  Sum_probs=210.2

Q ss_pred             hHHHHhHHHhHHHHHhHHHHHHHHHHHHH---------------HHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004160          227 SKAQMLNEANEVVKKQETEIQSLRKVIQE---------------KEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLS  291 (771)
Q Consensus       227 ~k~~~l~~an~~~~~qe~~~~~l~~~~~~---------------ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~  291 (771)
                      ++--.+.+||+-+.-+.-+.-.|-....+               -......++++..+ +.|++.-++.||-.+--.+--
T Consensus       125 ~~id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdl-e~kir~LrqElEEK~enll~l  203 (1195)
T KOG4643|consen  125 SVIDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADL-EKKIRTLRQELEEKFENLLRL  203 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            33444556666665555554444322211               12223333333333 457777777777777666777


Q ss_pred             HHHHHHHHHHHHHhhHHhhhHHHhHHHH---HHHHHHHHHHHhh--h-----hhHHHHHHHhHHHHH----------HHH
Q 004160          292 QDALKKLAEEASRRMEETNDTLEDFRRV---KKLLSDVRSELVS--S-----QKSLASSRKQMEEQE----------HLL  351 (771)
Q Consensus       292 q~elk~l~~~a~k~~~~~~~~~~df~rv---~~ll~~vr~el~~--s-----~~~~~~sr~~~e~q~----------~~l  351 (771)
                      ..||.-|..+.+|--.++-+-+.+-+|.   ++=|++.|.--..  +     =+-.-|++-++|+-.          ..|
T Consensus       204 r~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeML  283 (1195)
T KOG4643|consen  204 RNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEML  283 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            7777777777777777776666654443   3334443322111  0     012334455554432          235


Q ss_pred             HHHHHHHHHHH------HHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 004160          352 GKQLVELEEQK------KSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN-------ELNKEK  418 (771)
Q Consensus       352 ~~q~~el~~q~------~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~-------qLqkek  418 (771)
                      +.|++.+.-|=      +-++-|-+.|.+-+.+---.+.|+-.+..++..|+.+--++.-..+-+++       .-....
T Consensus       284 eeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~  363 (1195)
T KOG4643|consen  284 EEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQ  363 (1195)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHH
Confidence            55666665554      44667777777777777777778878888887777776666666666555       333333


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160          419 YSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEV  498 (771)
Q Consensus       419 qeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~EL  498 (771)
                      .+.++++.+ ..++..+..  ..+..  ..-+.....+.++..++-.++..-.++...++.+.++|...-..+..++..-
T Consensus       364 ~e~eqLts~-ralkllLEn--rrlt~--tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~  438 (1195)
T KOG4643|consen  364 VENEQLTSD-RALKLLLEN--RRLTG--TLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLE  438 (1195)
T ss_pred             HHHHHhhhH-HHHHHHHHh--HHHHH--HHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444331 112222211  00000  0001111133333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhhhhhHHHH-----------HHHHHHHHHHHHHH
Q 004160          499 RELKMIMSSREEQLVQAMDTLQE----------KDEHVLILQNELDGTKLKVSEA-----------ETVVEQIVDLTHKL  557 (771)
Q Consensus       499 kELKslIesLEgqLeEleeeLkE----------kEE~L~~~q~ELNe~nIe~sQq-----------Etl~eRIeeLt~eL  557 (771)
                      +.|....+.++......+..+..          .-.-+.+....++....+....           ..+...+..+++++
T Consensus       439 K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~  518 (1195)
T KOG4643|consen  439 KKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQY  518 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333322222222          1111222222222222221111           22222333333333


Q ss_pred             hhhccCcccCcCCcchHH-hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhh
Q 004160          558 VISNKNDESSTSMPTDDM-GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGR  636 (771)
Q Consensus       558 e~s~~~~~~dI~qlkdEI-eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~  636 (771)
                      ..+.         ...+. ...+  ..|......++.+-..|-.++..+... -+.-+-|..-+..++.-+.|++..+..
T Consensus       519 kt~~---------~qye~~~~k~--eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~ida  586 (1195)
T KOG4643|consen  519 KTCD---------IQYELLSNKL--EELEELLGNLEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDA  586 (1195)
T ss_pred             HHHH---------HHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            2211         00011 4445  555555566666666666666666665 566667777788888899999999999


Q ss_pred             hhhhHHHHHhHHhh------hhChhhHHHHHHHH
Q 004160          637 LDAKEKELKKLEET------VEDANDLRKLYALA  664 (771)
Q Consensus       637 ~~~~~~el~~~~~~------~~d~~d~~~~~~~~  664 (771)
                      |.+.....++||+-      .+||.++++-+.|-
T Consensus       587 L~alrrhke~LE~e~mnQql~~d~~~~kr~ie~L  620 (1195)
T KOG4643|consen  587 LNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWL  620 (1195)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHH
Confidence            99988888888433      47887777766654

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.88  E-value=0.15  Score=62.51  Aligned_cols=59  Identities=34%  Similarity=0.331  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhH
Q 004160          595 TKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDL  657 (771)
Q Consensus       595 l~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~  657 (771)
                      +..++.+|...+..+..+...+....    .--+.++.....+...-++++++.....++..+
T Consensus       690 ~~~~~~el~~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  748 (908)
T COG0419         690 LEQLEEELEQLREELEELLKKLGEIE----QLIEELESRKAELEELKKELEKLEKALELLEEL  748 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666555555555421    123344444555555555555554333333333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.81  E-value=0.17  Score=61.99  Aligned_cols=164  Identities=18%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          336 SLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELN  415 (771)
Q Consensus       336 ~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLq  415 (771)
                      ---..|++|.+--.-+...|.+|++-|.-+--|..      ++-+....+.-.-..++.       .+..++..+.....
T Consensus       181 ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqk------ldk~rr~lEYtiYdrEl~-------E~~~~l~~le~~r~  247 (1200)
T KOG0964|consen  181 ETKQKREKINELLKYIEERLRELEEEKEELEKYQK------LDKERRSLEYTIYDRELN-------EINGELERLEEDRS  247 (1200)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHhHhhhhhhhhhhHHH-------HHHHHHHHHHHHHh
Confidence            34467788888888888888888888887777753      111222211111122222       22223333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160          416 KEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELN  495 (771)
Q Consensus       416 kekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr  495 (771)
                      ..-.+.++....+..-..+...+..++.++...+..+..++..+..+...+-.+...++..+..++.+++..........
T Consensus       248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l  327 (1200)
T KOG0964|consen  248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLAL  327 (1200)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHH
Confidence            33333333444444445555555556666666666666666666666666666666666677777766666666555554


Q ss_pred             HHHHHHHHHHHhHHHHH
Q 004160          496 NEVRELKMIMSSREEQL  512 (771)
Q Consensus       496 ~ELkELKslIesLEgqL  512 (771)
                      ..+..+++.+...+..+
T Consensus       328 ~~l~~~~~ki~e~~~EL  344 (1200)
T KOG0964|consen  328 HVLQKVKDKIEEKKDEL  344 (1200)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            54444444444444333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.77  E-value=0.16  Score=59.45  Aligned_cols=103  Identities=24%  Similarity=0.206  Sum_probs=76.1

Q ss_pred             hHhhHHH-HHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHHHH
Q 004160          102 LESDLQA-VLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLK  180 (771)
Q Consensus       102 l~s~~~~-~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~lk  180 (771)
                      +..++.- .-..|-.=|+.|-+||.-  .|..++-.|+..+..-+..|..+-.....+.++|......=..+-.+|..|+
T Consensus        69 w~~~~~~i~~~~~~~ie~~l~~ae~~--~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~  146 (569)
T PRK04778         69 WRQKWDEIVTNSLPDIEEQLFEAEEL--NDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLK  146 (569)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444 444566668888888875  5788999999999999999999999999999888877666666667777777


Q ss_pred             HHhhhhHHHHHHHHHhhhhhHHHHHH
Q 004160          181 LRLKERDQEIAAMQSALSLKELELEK  206 (771)
Q Consensus       181 ~~~~~~~~~~~~~~~~ls~k~~e~~~  206 (771)
                      ...++--+.+.+-...++.-...+++
T Consensus       147 ~~y~~~rk~ll~~~~~~G~a~~~le~  172 (569)
T PRK04778        147 DLYRELRKSLLANRFSFGPALDELEK  172 (569)
T ss_pred             HHHHHHHHHHHhcCccccchHHHHHH
Confidence            77777666666666666655555544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.76  E-value=5.9e-06  Score=99.70  Aligned_cols=163  Identities=28%  Similarity=0.321  Sum_probs=0.0

Q ss_pred             HHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHh-------hhhHHHHHhhhhhHHHHHHhh
Q 004160          112 ALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELG-------QSNLKLVSQARHIEDLKLRLK  184 (771)
Q Consensus       112 ~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~-------~~~~~l~~q~~~i~~lk~~~~  184 (771)
                      .|+|||.+|..+-.++-.+.+.....-.       .|....++.+.|+++|-       +|.+.-..-.++++.|+-.|+
T Consensus        12 ~l~kke~El~~~~~~~e~e~~~~~~l~k-------~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Le   84 (859)
T PF01576_consen   12 QLKKKEEELSQLNSKLEDEQALRAQLQK-------KIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLE   84 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999888888777665544432       23333444445554442       233333333568889999999


Q ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHH--------HhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004160          185 ERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQ--------MLNEANEVVKKQETEIQSLRKVIQEK  256 (771)
Q Consensus       185 ~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~--------~l~~an~~~~~qe~~~~~l~~~~~~k  256 (771)
                      +.-....+-...-...+.|+.+||.+|-.-.-.-...-++++.|-+        -+..+.-+-.+-|.+-..|...+..-
T Consensus        85 e~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL  164 (859)
T PF01576_consen   85 EAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDL  164 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9999999888899999999999999994322222223344444431        12223333333344444555555555


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160          257 EEELEASVALRKVEEEKLKVVEANL  281 (771)
Q Consensus       257 e~~~~~~~~~~k~~~ekl~~~e~~l  281 (771)
                      ...+......+---+.+.|..|+.|
T Consensus       165 ~~~l~~~~k~k~~~Ek~~K~lE~qL  189 (859)
T PF01576_consen  165 QAQLDSLQKAKQEAEKKRKQLEAQL  189 (859)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHH
Confidence            5555544443333344455555444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.75  E-value=0.17  Score=59.18  Aligned_cols=92  Identities=18%  Similarity=0.382  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 004160          271 EEKLKVVEANLEK-----RTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQME  345 (771)
Q Consensus       271 ~ekl~~~e~~le~-----~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e  345 (771)
                      +.+|...|.+..+     .+-+++.|.+-|.++..    +++.....|+   +|-+|+..+..++-.-=.-|..-=++|.
T Consensus       171 e~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~----~~~~l~~~~~---~iP~l~~~~~~~~P~ql~el~~gy~~m~  243 (569)
T PRK04778        171 EKQLENLEEEFSQFVELTESGDYVEAREILDQLEE----ELAALEQIME---EIPELLKELQTELPDQLQELKAGYRELV  243 (569)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4566666666653     33457777777776654    3444444443   3455666666555433334444444454


Q ss_pred             HHH-----HHHHHHHHHHHHHHHHHHHHH
Q 004160          346 EQE-----HLLGKQLVELEEQKKSLTSYM  369 (771)
Q Consensus       346 ~q~-----~~l~~q~~el~~q~~~~~s~~  369 (771)
                      ++-     ..+.++++.|.++....+.-.
T Consensus       244 ~~gy~~~~~~i~~~i~~l~~~i~~~~~~l  272 (569)
T PRK04778        244 EEGYHLDHLDIEKEIQDLKEQIDENLALL  272 (569)
T ss_pred             HcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            431     245666666666655544433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.74  E-value=5.3e-05  Score=89.75  Aligned_cols=49  Identities=22%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004160          323 LSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSL  372 (771)
Q Consensus       323 l~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l  372 (771)
                      ..-|..|..+-+..+... ..++.+-.-++-|...|++.+.+..+|.++.
T Consensus       283 ~elLeEe~~sLq~kl~~~-E~~~~el~~lq~e~~~Le~el~sW~sl~~~~  331 (722)
T PF05557_consen  283 VELLEEEKRSLQRKLERL-EELEEELAELQLENEKLEDELNSWESLLQDI  331 (722)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344556666555554433 3445666677778999999999999998874

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.72  E-value=7.1e-06  Score=99.02  Aligned_cols=402  Identities=23%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             HHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHh
Q 004160          230 QMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEET  309 (771)
Q Consensus       230 ~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~  309 (771)
                      ..+...+....+-..++.+|...+...+..+..+.-.+.-=+..|.-+...|+--+-.-...+..|+.+..+    .+..
T Consensus       201 r~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e----~~~L  276 (859)
T PF01576_consen  201 RQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHE----LEQL  276 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHH----HHHH
Confidence            344455555556666666666666666665555544333333444444444444444444444444444332    2233


Q ss_pred             hhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHH
Q 004160          310 NDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEE-----------QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE  378 (771)
Q Consensus       310 ~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~-----------q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e  378 (771)
                      .+.+++.-.-+.-   +...|..++.-+++.|++++.           --..|..++.++.++-....++..+|+-++..
T Consensus       277 ~eqleeE~e~k~~---l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~r  353 (859)
T PF01576_consen  277 REQLEEEEEAKSE---LERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKR  353 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhhhhhHHH---HHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333222211   112222333334444444333           33344555555555555555555555555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160          379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE  458 (771)
Q Consensus       379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee  458 (771)
                      +.++...+.   .++.........++++.-.++..+...+..+..       +..++.....+...+...+-.+.+.+..
T Consensus       354 L~~EleDl~---~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~-------~~~e~d~~q~e~r~~~te~~~Lk~~lee  423 (859)
T PF01576_consen  354 LQGELEDLT---SELEKAQAAAAELEKKQRKFDKQLAEWKAKVEE-------LQAERDAAQREARELETELFKLKNELEE  423 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHhhhHH
Confidence            444433222   222222222223333333333333333333333       3333333334444455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004160          459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKL  538 (771)
Q Consensus       459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nI  538 (771)
                      +...++.+......++.+|.++...+......+.++......|...+..+...+.+++..+...+..+.-++..|+.++.
T Consensus       424 ~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~  503 (859)
T PF01576_consen  424 LQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ  503 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666677777777777777777777777777777778888888888888888888888888888888887


Q ss_pred             hHHHH------------HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 004160          539 KVSEA------------ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFAR  606 (771)
Q Consensus       539 e~sQq------------Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelR  606 (771)
                      .+-+-            .+....|..+...|+.=. -.-..+...+..+..+|  ..|....+........+...+..+.
T Consensus       504 e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~-k~r~~~~r~kkKLE~~l--~eLe~~ld~~n~~~~e~~k~~kk~q  580 (859)
T PF01576_consen  504 EIERELQEKEEEFEETRRNHQRQLESLEAELEEER-KERAEALREKKKLESDL--NELEIQLDHANRANEEAQKQLKKLQ  580 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            77554            356777778887776411 11223334444445555  5555444444444445555555555


Q ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhh
Q 004160          607 ENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETV  651 (771)
Q Consensus       607 eeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~  651 (771)
                      ..+.++-..+.+.++..+.--..+...-.++....-||..+....
T Consensus       581 ~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~  625 (859)
T PF01576_consen  581 AQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREAL  625 (859)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555444444444445555555555554333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.71  E-value=0.33  Score=61.48  Aligned_cols=70  Identities=20%  Similarity=0.170  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhHhhhhhhhcc-------chhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          544 ETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLELMQQGLDKG-------NDNFRLQTKQLEIELKFARENLRMKE  613 (771)
Q Consensus       544 Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~~qeLeke-------reeLeeel~eLEqEleelReeLrEkE  613 (771)
                      ..+.++|..+..+|....        .....+   ...+  ......       +..+..++..+++.+..++..+..+.
T Consensus       774 ~~l~~~i~~L~~~l~~ie--------~~r~~V~eY~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  843 (1201)
T PF12128_consen  774 QQLKQEIEQLEKELKRIE--------ERRAEVIEYEDWL--QEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQ  843 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHH--HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777777544        222222   3333  333333       44444444444444444444444444


Q ss_pred             HHHHHHHHhc
Q 004160          614 MEVLAAKRAL  623 (771)
Q Consensus       614 ~eLrelrRaL  623 (771)
                      .++...+..+
T Consensus       844 ~~~~~~~~~l  853 (1201)
T PF12128_consen  844 KEVKQRRKEL  853 (1201)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.70  E-value=0.029  Score=65.26  Aligned_cols=58  Identities=14%  Similarity=0.165  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhH
Q 004160          600 IELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDL  657 (771)
Q Consensus       600 qEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~  657 (771)
                      .+...+...|..++.+|..++.+++..--||-+.|.-.-....|+..--.+++-.++.
T Consensus       335 e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLegee~r  392 (546)
T KOG0977|consen  335 EDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGEEER  392 (546)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhccccCC
Confidence            3444555667777777777777777777777777776666666666555555444433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.67  E-value=0.34  Score=60.59  Aligned_cols=248  Identities=18%  Similarity=0.173  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          354 QLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQE  433 (771)
Q Consensus       354 q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQe  433 (771)
                      ...++++-...+..|+..|-.....+.++..+.+..+.+..+   .+..++++|..+++.+.....++...+.......+
T Consensus       582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e---~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e  658 (1317)
T KOG0612|consen  582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISE---IIAELKEEISSLEETLKAGKKELLKVEELKRENQE  658 (1317)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            333666666677777777766666666666555544443332   23334444444444444444444444332212222


Q ss_pred             HHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004160          434 ELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLV  513 (771)
Q Consensus       434 ELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLe  513 (771)
                      .+...+++     ..-...+.++..++.+.++...+...+         +|........++...+..=+.-...+++-..
T Consensus       659 ~~~~~ek~-----~~e~~~e~~lk~~q~~~eq~~~E~~~~---------~L~~~e~~~~e~~~~lseek~ar~k~e~~~~  724 (1317)
T KOG0612|consen  659 RISDSEKE-----ALEIKLERKLKMLQNELEQENAEHHRL---------RLQDKEAQMKEIESKLSEEKSAREKAENLLL  724 (1317)
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            22221111     111122223333333333333332222         2222233344444444444444455566666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhHhhhhhhhccchh
Q 004160          514 QAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLELMQQGLDKGNDN  590 (771)
Q Consensus       514 EleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~~qeLekeree  590 (771)
                      +++..+..+..-+...+..++..+-...+.   ......++..|+...    ..-..+.+++   +..+     ..  ..
T Consensus       725 ~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~---~~~vl~Lq~~LEqe~----~~r~~~~~eLssq~~~~-----~t--~~  790 (1317)
T KOG0612|consen  725 EIEAELEYLSNDYKQSQEKLNELRRSKDQL---ITEVLKLQSMLEQEI----SKRLSLQRELKSQEQEV-----NT--KM  790 (1317)
T ss_pred             HHHHHHHHHhhhhhhhccchhhhhhhHHHH---HHHHHHHHHHHHHHH----HHhhhhHHHhhhHHHhh-----cc--HH
Confidence            666666666666666555555544433333   333344455555433    2222233344   2222     11  44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 004160          591 FRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKT  632 (771)
Q Consensus       591 Leeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~  632 (771)
                      ++.+...+...+..++..+..-.++++..++....-+-+|..
T Consensus       791 ~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~~~k~lq~  832 (1317)
T KOG0612|consen  791 LEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWGQMKELQD  832 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence            556666666666666666666666666655544444444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.67  E-value=0.13  Score=60.13  Aligned_cols=87  Identities=18%  Similarity=0.306  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhhHHhhhHHH-hHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160          292 QDALKKLAEEASRRMEETNDTLE-DFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMT  370 (771)
Q Consensus       292 q~elk~l~~~a~k~~~~~~~~~~-df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~  370 (771)
                      +-++.-|-.-..++++.++...+ ....++++|++.-.+...-+.-+.-.+-++.+-...+.+...+...-|.-+-.|+.
T Consensus        69 ~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~  148 (546)
T KOG0977|consen   69 EHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLS  148 (546)
T ss_pred             HHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            34677777778888888877665 46678888888766666555555555555555555555555555555555555555


Q ss_pred             hhHHHhHH
Q 004160          371 SLKDAQVE  378 (771)
Q Consensus       371 ~l~~a~~e  378 (771)
                      -|-..+.+
T Consensus       149 ~l~~leAe  156 (546)
T KOG0977|consen  149 RLSELEAE  156 (546)
T ss_pred             hhhhhhhH
Confidence            55444443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.63  E-value=0.15  Score=55.40  Aligned_cols=72  Identities=17%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004160          544 ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL  623 (771)
Q Consensus       544 Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL  623 (771)
                      ++++++|+.+.++...+-               ..+  ..++..++.+++....+-.++......+.++-..+..++..+
T Consensus       175 ~e~~eki~~la~eaqe~h---------------e~m--~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el  237 (294)
T COG1340         175 REIHEKIQELANEAQEYH---------------EEM--IKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL  237 (294)
T ss_pred             HHHHHHHHHHHHHHHHHH---------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            566677777777666544               344  555566666666666666666666666666666666666655


Q ss_pred             ccchHHHHH
Q 004160          624 TVKDEELKT  632 (771)
Q Consensus       624 ~~kd~elk~  632 (771)
                      .--+..|++
T Consensus       238 re~~k~ik~  246 (294)
T COG1340         238 RELEKKIKA  246 (294)
T ss_pred             HHHHHHHHH
Confidence            555555543

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.54  E-value=0.51  Score=58.97  Aligned_cols=183  Identities=22%  Similarity=0.239  Sum_probs=124.9

Q ss_pred             HHhHHHhHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 004160          230 QMLNEANEVVKKQETEIQSLRKVI--------------QEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDAL  295 (771)
Q Consensus       230 ~~l~~an~~~~~qe~~~~~l~~~~--------------~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~el  295 (771)
                      +-|...+.-+++-+.++.+.++.+              ..-..++.-+..+-..++.+|..--..|.+.|.+.=.   |.
T Consensus       405 E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~---e~  481 (1293)
T KOG0996|consen  405 EKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE---EI  481 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH---HH
Confidence            334555555566555555544433              3334444555555555555565555566665555432   22


Q ss_pred             HHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004160          296 KKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDA  375 (771)
Q Consensus       296 k~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a  375 (771)
                      .++..       +......+|.++++=++.-+|||---...-..--+++++-...|..--..+.+-+..|.+....|.+-
T Consensus       482 ~~~ek-------el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~  554 (1293)
T KOG0996|consen  482 EKLEK-------ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL  554 (1293)
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            22222       22334566777888888888887655555556666777777777777777888888999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          376 QVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQ  422 (771)
Q Consensus       376 ~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLE  422 (771)
                      +.|+....+.|-.++.+..++..++..+..++..+...+....++-+
T Consensus       555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~k  601 (1293)
T KOG0996|consen  555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNK  601 (1293)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            99999999999999999999999999999999999988877766544

>PRK11637 AmiB activator; Provisional

Probab=97.50  E-value=0.19  Score=56.51  Aligned_cols=18  Identities=17%  Similarity=0.340  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 004160          398 RDLSMEKELVEELQNELN  415 (771)
Q Consensus       398 rqLlqlekeIeeLr~qLq  415 (771)
                      .++..++.+|..++.++.
T Consensus        96 ~~i~~~~~ei~~l~~eI~  113 (428)
T PRK11637         96 NTLNQLNKQIDELNASIA  113 (428)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>PRK11637 AmiB activator; Provisional

Probab=97.44  E-value=0.16  Score=57.06  Aligned_cols=49  Identities=12%  Similarity=0.213  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE  434 (771)
Q Consensus       386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE  434 (771)
                      ++.+...+..+..++...+.+|..++.++...+..+..++.++..++..
T Consensus        77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444444444443333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.37  E-value=0.052  Score=65.09  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHH-hhH
Q 004160          500 ELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDM-GLE  578 (771)
Q Consensus       500 ELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI-eee  578 (771)
                      .++.....+|..+..+..+++.+++.+..+..++.+++.-.   .+....++.|-..|..+.    ..-..+.+.+ .+.
T Consensus       542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~---~e~~~~~e~L~~aL~amq----dk~~~LE~sLsaEt  614 (697)
T PF09726_consen  542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE---KESEKDTEVLMSALSAMQ----DKNQHLENSLSAET  614 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHH----HHHHHHHHhhhHHH
Confidence            47778888888888888889988888888888886555431   111222233333333222    1111111222 111


Q ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004160          579 LMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL  623 (771)
Q Consensus       579 L~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL  623 (771)
                      -       =+.+|+..+-.+..+++-....++.+|.+|.+++..+
T Consensus       615 r-------iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki  652 (697)
T PF09726_consen  615 R-------IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI  652 (697)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1       1245566777777777777777777777777665443

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.2  Score=60.12  Aligned_cols=189  Identities=21%  Similarity=0.225  Sum_probs=116.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          336 SLASSRKQMEEQEHLLGKQLVELEEQKKSLTS-YMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNEL  414 (771)
Q Consensus       336 ~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s-~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qL  414 (771)
                      ..-.-||+-.|-+.+|++|- ||+-||.-=-- -..--++|+.|.+..| +|.==+.+..++..+-....+.|-.+...+
T Consensus       362 rqEqErk~qlElekqLerQR-eiE~qrEEerkkeie~rEaar~ElEkqR-qlewErar~qem~~Qk~reqe~iv~~nak~  439 (1118)
T KOG1029|consen  362 RQEQERKAQLELEKQLERQR-EIERQREEERKKEIERREAAREELEKQR-QLEWERARRQEMLNQKNREQEWIVYLNAKK  439 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34456777777777777764 55555432111 1223456666666544 233446778888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160          415 NKEKYSLQQAIDEVSSLQEELG-------RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNA  487 (771)
Q Consensus       415 qkekqeLEelqeEIesLQeELq-------elekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeei  487 (771)
                      ..+..+|+.+...+..|...+.       ....++..+.+..+.-..+...++.++.+++..+..+-.+.+.+..+|...
T Consensus       440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~  519 (1118)
T KOG1029|consen  440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK  519 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence            8888887777777776666643       334566666666666667777777777777777777777777777666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160          488 RQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHV  526 (771)
Q Consensus       488 qrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L  526 (771)
                      +.....-......|+......+.....+...+.+++...
T Consensus       520 q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~  558 (1118)
T KOG1029|consen  520 QSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET  558 (1118)
T ss_pred             hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444444445555544444444444444444444444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.35  E-value=0.049  Score=53.35  Aligned_cols=131  Identities=18%  Similarity=0.231  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160          379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE  458 (771)
Q Consensus       379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee  458 (771)
                      ...-..+...++..++.++....+.+.+|..|+..+..++..++.       +...+......+.+........+    .
T Consensus         9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~-------~~~~l~~~k~~lee~~~~~~~~E----~   77 (143)
T PF12718_consen    9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDK-------LEEQLKEAKEKLEESEKRKSNAE----Q   77 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHhHH----H
Confidence            333334444445555555555555554444444444444444333       33333333333333333222211    4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160          459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVL  527 (771)
Q Consensus       459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~  527 (771)
                      +..+++.|..++..       ....|..+..++.........+...+..++.........|.++...|.
T Consensus        78 l~rriq~LEeele~-------ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~  139 (143)
T PF12718_consen   78 LNRRIQLLEEELEE-------AEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK  139 (143)
T ss_pred             HHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44444444444444       444444444444444444444444455555544444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.26  E-value=0.068  Score=52.38  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160          409 ELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNAR  488 (771)
Q Consensus       409 eLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiq  488 (771)
                      .+...+..+++++..+..+|.+|+.....++.++..+...+......+........    ..+++..+|+.+..++....
T Consensus        18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~----~~E~l~rriq~LEeele~ae   93 (143)
T PF12718_consen   18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS----NAEQLNRRIQLLEEELEEAE   93 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hHHHHHhhHHHHHHHHHHHH
Confidence            33333333344444444444444444444444444444444444333333322221    22256666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004160          489 QMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGT  536 (771)
Q Consensus       489 rrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~  536 (771)
                      ..+......+..+....+.++..+..+.......+..+..+...|...
T Consensus        94 ~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   94 KKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            666666666666666666666666666666666666666666666543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.26  E-value=0.031  Score=59.19  Aligned_cols=52  Identities=21%  Similarity=0.334  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004160          490 MLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS  541 (771)
Q Consensus       490 rLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~s  541 (771)
                      .++++..++..++....+++..+.++...+..++..+...+..+-.+.-.+.
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~  141 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA  141 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444433333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.23  E-value=0.088  Score=55.83  Aligned_cols=7  Identities=57%  Similarity=0.729  Sum_probs=2.5

Q ss_pred             hHHHhHH
Q 004160          372 LKDAQVE  378 (771)
Q Consensus       372 l~~a~~e  378 (771)
                      |++|+.+
T Consensus        33 l~k~~~e   39 (239)
T COG1579          33 LKKAKAE   39 (239)
T ss_pred             HHHHHHH
Confidence            3333333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.15  E-value=0.61  Score=55.34  Aligned_cols=72  Identities=14%  Similarity=0.190  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHH
Q 004160          496 NEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDM  575 (771)
Q Consensus       496 ~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI  575 (771)
                      .+....-..+..+...+.++...++.+++.+..+..+|..+.-...+.        .++.++-..+    .+|.....+|
T Consensus       440 ~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs--------~Yt~RIlEIv----~NI~KQk~eI  507 (594)
T PF05667_consen  440 SESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS--------AYTRRILEIV----KNIRKQKEEI  507 (594)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHH----HhHHHHHHHH
Confidence            344444455555666666666667777776666666665554443332        3444454455    4444555555


Q ss_pred             hhHh
Q 004160          576 GLEL  579 (771)
Q Consensus       576 eeeL  579 (771)
                      ...|
T Consensus       508 ~KIl  511 (594)
T PF05667_consen  508 EKIL  511 (594)
T ss_pred             HHHH
Confidence            3333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.14  E-value=0.99  Score=55.30  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 004160          386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE  444 (771)
Q Consensus       386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqE  444 (771)
                      |...+=.+..+++=.+++..++..|+.++.+.+.+..+.+.=.+.+..++......+.-
T Consensus       257 lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm  315 (1243)
T KOG0971|consen  257 LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM  315 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344556667777788888889999999999999888888888888876655544433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.10  E-value=0.0013  Score=78.22  Aligned_cols=239  Identities=18%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160          379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE  458 (771)
Q Consensus       379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee  458 (771)
                      +..-+..+......+..|+++..=..+++.-|+.++.....+....... ......+..+..-...+......++..+..
T Consensus       387 ~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ele~~l~~  465 (722)
T PF05557_consen  387 IEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPS-EQDTQRIKEIEDLEQLVDEYKAELEAQLEE  465 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc-hhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344455566677888888888888888888888877664333221 011111111111111112212222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhh
Q 004160          459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLI--LQNELDGT  536 (771)
Q Consensus       459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~--~q~ELNe~  536 (771)
                      +...+...+.........+.............+.....++..|...+..++.....+...+..++..|..  ++..|+..
T Consensus       466 l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~  545 (722)
T PF05557_consen  466 LEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPS  545 (722)
T ss_dssp             ----------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTT
T ss_pred             HHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence            3322222232222223333333322222222111222333334444444444444444444444444432  23556655


Q ss_pred             hhhHHHH----------------HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHH
Q 004160          537 KLKVSEA----------------ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEI  600 (771)
Q Consensus       537 nIe~sQq----------------Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEq  600 (771)
                      +.++-.+                +.+....+.+..++..+.    ..-..+.+-+           +.    ........
T Consensus       546 ~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le----~~~~~~~~~~-----------p~----~~~~~~~~  606 (722)
T PF05557_consen  546 KTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLE----EGNSQPVDAV-----------PT----SSLESQEK  606 (722)
T ss_dssp             TEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TTT-------------------------------H
T ss_pred             CceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCCcccc-----------cc----hhhhhhHH
Confidence            5554444                455555556665554443    1111111111           00    11123344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhh
Q 004160          601 ELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRL  637 (771)
Q Consensus       601 EleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~  637 (771)
                      ++..++..+..++..+..++.-.+.|-.|+..|+--+
T Consensus       607 e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l  643 (722)
T PF05557_consen  607 EIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL  643 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666677777777777777777777777766544

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.03  E-value=1.2  Score=52.91  Aligned_cols=98  Identities=11%  Similarity=0.193  Sum_probs=45.4

Q ss_pred             HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Q 004160          235 ANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLE  314 (771)
Q Consensus       235 an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~  314 (771)
                      +..-+..-+.++..+...++....++.......+.-+.++..+++.+....-.|+.--++|+.--..+-....+....+.
T Consensus       207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~  286 (650)
T TIGR03185       207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR  286 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555555555555444444455555555555555555554444443333333333333333333


Q ss_pred             hHH-------HHHHHHHHHHHHHhh
Q 004160          315 DFR-------RVKKLLSDVRSELVS  332 (771)
Q Consensus       315 df~-------rv~~ll~~vr~el~~  332 (771)
                      +|-       =+..|+..++.-+..
T Consensus       287 ~l~~~~~p~~l~~~ll~~~~~q~~~  311 (650)
T TIGR03185       287 ELAADPLPLLLIPNLLDSTKAQLQK  311 (650)
T ss_pred             HHhcccCCHhhhHHHHHHHHHHHHH
Confidence            332       244455544444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.03  E-value=0.00038  Score=82.63  Aligned_cols=121  Identities=23%  Similarity=0.280  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHh---hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHH
Q 004160          316 FRRVKKLLSDVRSELV---SSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEAR  392 (771)
Q Consensus       316 f~rv~~ll~~vr~el~---~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE  392 (771)
                      |+..|+=||.+|..-.   --...+..||+++++- .-++.|+.+|+++-..++--...|++-.-.+..-+.++-..+..
T Consensus       293 a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~q  371 (713)
T PF05622_consen  293 ARALRDELDELREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQ  371 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4555555666665432   2345678999999984 56889999999987655444444444443344444555555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160          393 NKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGR  437 (771)
Q Consensus       393 ~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqe  437 (771)
                      +.+|+..+.....++..+..++..+...+..+..+...+..+...
T Consensus       372 i~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~  416 (713)
T PF05622_consen  372 IQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDS  416 (713)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665655555555555555555555555555444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.95  E-value=0.13  Score=50.66  Aligned_cols=97  Identities=21%  Similarity=0.224  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160          385 KLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQ  464 (771)
Q Consensus       385 ~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiE  464 (771)
                      +|..++.+...++..+..++.++...+..+.......++....+..|+.++..+..++..+...+..+..+...+....+
T Consensus        11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq   90 (140)
T PF10473_consen   11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ   90 (140)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666777777777777777777766666666666666666666666666555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHhHH
Q 004160          465 NLKSKQASLQLILEEKD  481 (771)
Q Consensus       465 qLKsEIesLq~ELEEId  481 (771)
                      ..+.+|..+.....++.
T Consensus        91 ~~q~kv~eLE~~~~~~~  107 (140)
T PF10473_consen   91 KKQEKVSELESLNSSLE  107 (140)
T ss_pred             HHHHHHHHHHHHhHHHH
Confidence            55555544444444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK11281 hypothetical protein; Provisional

Probab=96.92  E-value=0.46  Score=59.90  Aligned_cols=65  Identities=12%  Similarity=0.097  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160          479 EKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA  543 (771)
Q Consensus       479 EIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq  543 (771)
                      .++.++.-...++...+.++..-..+.+-+.-+..-+...+...+.++..+++.+|+.|.+.+++
T Consensus       196 ~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~  260 (1113)
T PRK11281        196 LLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEK  260 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555555555566666777778888888889999999999999988888777

>PRK09039 hypothetical protein; Validated

Probab=96.91  E-value=0.092  Score=58.01  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004160          465 NLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDG  535 (771)
Q Consensus       465 qLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe  535 (771)
                      .++.....+...+.......++....+.-++.++.-|+.++..++..+..++....+...+|..+...|+.
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~  183 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV  183 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.90  E-value=2  Score=53.53  Aligned_cols=104  Identities=20%  Similarity=0.217  Sum_probs=62.8

Q ss_pred             HHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160          432 QEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ  511 (771)
Q Consensus       432 QeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq  511 (771)
                      ..++..++......+..+....+...++..++..++..+..+...+..+...+....+...++...+..|...+.+....
T Consensus       380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~  459 (1141)
T KOG0018|consen  380 LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEE  459 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhh
Confidence            33445555555555555555555556666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh
Q 004160          512 LVQAMDTLQEKDEHVLILQNELDG  535 (771)
Q Consensus       512 LeEleeeLkEkEE~L~~~q~ELNe  535 (771)
                      +.+++..|.....++..++....+
T Consensus       460 ~~e~n~eL~~~~~ql~das~dr~e  483 (1141)
T KOG0018|consen  460 PYELNEELVEVLDQLLDASADRHE  483 (1141)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcc
Confidence            666666666666666665554443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.89  E-value=1.5  Score=51.63  Aligned_cols=192  Identities=16%  Similarity=0.188  Sum_probs=106.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcc---hHHh
Q 004160          500 ELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPT---DDMG  576 (771)
Q Consensus       500 ELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlk---dEIe  576 (771)
                      ........+.+++..+....+.....++-++..|.=..-.......+..+|..+........    ..+.+-.   ..+.
T Consensus       303 ~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~----~~i~~~~~~yS~i~  378 (560)
T PF06160_consen  303 YVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLE----ERIEEQQVPYSEIQ  378 (560)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCcCHHHHH
Confidence            34444455566666666666666666666666654444455555777777777777777655    2222211   1222


Q ss_pred             hHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhh
Q 004160          577 LELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDAND  656 (771)
Q Consensus       577 eeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d  656 (771)
                      ..+         ..+...+..++.+...+.+.+..+..+=..++..++--...|-.+-+++.-        --++.=|.+
T Consensus       379 ~~l---------~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek--------~nLPGlp~~  441 (560)
T PF06160_consen  379 EEL---------EEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK--------SNLPGLPED  441 (560)
T ss_pred             HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCCCCHH
Confidence            333         344455555666666666666666666666666665555555554444332        122333444


Q ss_pred             HHHHHHHHhhhhcccccchhHHHHHhHHHhhHHHHHhHHHHHHHHHHHHHHhhcccc
Q 004160          657 LRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKASL  713 (771)
Q Consensus       657 ~~~~~~~~~e~~~~~~~~~~~~~~l~~eaa~~e~~aat~~l~kl~~~s~~~l~~~~~  713 (771)
                      +...+..+...|... ...+.=-.+-..+..-.+.-|++.+..|-+.+.+++..|.|
T Consensus       442 y~~~~~~~~~~i~~l-~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L  497 (560)
T PF06160_consen  442 YLDYFFDVSDEIEEL-SDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATL  497 (560)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443332210 01111122334555567888999999999999999999987

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.85  E-value=1.3  Score=53.59  Aligned_cols=19  Identities=37%  Similarity=0.429  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004160          349 HLLGKQLVELEEQKKSLTS  367 (771)
Q Consensus       349 ~~l~~q~~el~~q~~~~~s  367 (771)
                      .+|++++.+...+|.++..
T Consensus       491 ~~LEkrL~eE~~~R~~lEk  509 (697)
T PF09726_consen  491 QQLEKRLAEERRQRASLEK  509 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444443333

; GO: 0016021 integral to membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.79  E-value=2.3  Score=52.37  Aligned_cols=248  Identities=20%  Similarity=0.200  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160          383 RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE  462 (771)
Q Consensus       383 ~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e  462 (771)
                      |.+|+.+.+.+..|.-+...=+.++-+++    +.+=.++++++-.+.+-       .....+++.+..-+.+..+++.-
T Consensus       230 r~QvrdLtEkLetlR~kR~EDk~Kl~Ele----kmkiqleqlqEfkSkim-------~qqa~Lqrel~raR~e~keaqe~  298 (1243)
T KOG0971|consen  230 RAQVRDLTEKLETLRLKRAEDKAKLKELE----KMKIQLEQLQEFKSKIM-------EQQADLQRELKRARKEAKEAQEA  298 (1243)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555554444444443333    23333333333222222       23344556666666677777777


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 004160          463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSE  542 (771)
Q Consensus       463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQ  542 (771)
                      .++++.++.....-++-+.-.-+-+..+-+.+++++..++..+++++-.++=+.++..++=      .+.-+.--.+|.|
T Consensus       299 ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG------~~~~~~ss~qfkq  372 (1243)
T KOG0971|consen  299 KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKG------SDGQAASSYQFKQ  372 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCcccchHHHHH
Confidence            7777778777777777766666666666777777777777777776666666655554431      1111122233333


Q ss_pred             HHHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160          543 AETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRA  622 (771)
Q Consensus       543 qEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRa  622 (771)
                      ++.--.|+.+--.+|-.           +..+-..+.  +-+.++.+-...++.++....+.+...+...|+.|.+++.+
T Consensus       373 lEqqN~rLKdalVrLRD-----------lsA~ek~d~--qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ  439 (1243)
T KOG0971|consen  373 LEQQNARLKDALVRLRD-----------LSASEKQDH--QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ  439 (1243)
T ss_pred             HHHHHHHHHHHHHHHHh-----------cchHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33222222222222221           111111111  22222223333444667777777777888888888888877


Q ss_pred             cccchHHHHHHHhhhhhh----HHHHHhHHhhhhChhhHHHHH
Q 004160          623 LTVKDEELKTVLGRLDAK----EKELKKLEETVEDANDLRKLY  661 (771)
Q Consensus       623 L~~kd~elk~~~~~~~~~----~~el~~~~~~~~d~~d~~~~~  661 (771)
                      .|+-=-- .+.+.-|++|    |.-++-|||++.|-..+..+-
T Consensus       440 VDAAlGA-E~MV~qLtdknlnlEekVklLeetv~dlEalee~~  481 (1243)
T KOG0971|consen  440 VDAALGA-EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMN  481 (1243)
T ss_pred             HHHhhcH-HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7653110 1222333333    455556677777666555443

>PRK09039 hypothetical protein; Validated

Probab=96.75  E-value=0.25  Score=54.72  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=47.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHH
Q 004160          472 SLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVEQI  550 (771)
Q Consensus       472 sLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-Etl~eRI  550 (771)
                      ..+.....+..+|........+..+++..|+.++..+..++..++..+...+......+..+..+...+..+ ..-+..+
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l  192 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL  192 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555556666666666666666666666666666666666666666665555555555555444444 1223344


Q ss_pred             HHHHHHH
Q 004160          551 VDLTHKL  557 (771)
Q Consensus       551 eeLt~eL  557 (771)
                      ..+..+.
T Consensus       193 ~~~~~~~  199 (343)
T PRK09039        193 NRYRSEF  199 (343)
T ss_pred             HHhHHHH
Confidence            4444444

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.72  E-value=0.63  Score=47.95  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=36.4

Q ss_pred             HHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160          434 ELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELN  495 (771)
Q Consensus       434 ELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr  495 (771)
                      .|..++..=.++-..|....+++-.|+..+..++.....+...+.+.+.++..+...+..+.
T Consensus        48 AL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~  109 (194)
T PF15619_consen   48 ALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLK  109 (194)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555566666666666666666666666666666666666665555555443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.69  E-value=1.3  Score=56.03  Aligned_cols=65  Identities=15%  Similarity=0.112  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160          479 EKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA  543 (771)
Q Consensus       479 EIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq  543 (771)
                      .++.+..-...++..++.+......+.+-..-+..-++..+...+.+++.+++.+|..|.+-+++
T Consensus       177 ~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~  241 (1109)
T PRK10929        177 ALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER  241 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555566666666666666666666777777788888888888888877776666

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.61  E-value=0.52  Score=46.52  Aligned_cols=81  Identities=17%  Similarity=0.121  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160          401 SMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEK  480 (771)
Q Consensus       401 lqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEI  480 (771)
                      +...+++...+...+.++.....+..++...+.+...+..+-......+..++.++..+......+...+.++..+...+
T Consensus         6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L   85 (140)
T PF10473_consen    6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL   85 (140)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444333333333333333333333333333333333333333333333333333333333333


Q ss_pred             H
Q 004160          481 D  481 (771)
Q Consensus       481 d  481 (771)
                      .
T Consensus        86 ~   86 (140)
T PF10473_consen   86 D   86 (140)
T ss_pred             H
Confidence            3

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.61  E-value=2.4  Score=50.29  Aligned_cols=66  Identities=24%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHH
Q 004160          314 EDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERV  384 (771)
Q Consensus       314 ~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~  384 (771)
                      .||.|..++|+++-.+|--=|+..--||+..-+...--+++.-|..     .-+...-|+.+|.||-+=..
T Consensus        15 ~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k-----~k~~~~llK~yQ~EiD~Ltk   80 (629)
T KOG0963|consen   15 FDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDK-----LKMVNPLLKSYQSEIDNLTK   80 (629)
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999888888888776643     23444567777888765443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.59  E-value=0.46  Score=48.91  Aligned_cols=139  Identities=24%  Similarity=0.284  Sum_probs=65.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----HHHHHHHHHHHH
Q 004160          477 LEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLK-----VSEAETVVEQIV  551 (771)
Q Consensus       477 LEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe-----~sQqEtl~eRIe  551 (771)
                      |..+...-+.+-+-+..-.+++..|+..+....+....++..+++.+.++.-..+.+..+.-=     +..-+.+..++.
T Consensus        49 L~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~  128 (194)
T PF15619_consen   49 LQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLS  128 (194)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence            333333334444444444555555555555555556666666666665555555555432211     111155666666


Q ss_pred             HHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 004160          552 DLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDE  628 (771)
Q Consensus       552 eLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~  628 (771)
                      .++..+....    ..|..+.-.++-.-         ..+..++..-......+...+..+.+++..++..+..||-
T Consensus       129 ~~~~~l~~~~----~ki~~Lek~leL~~---------k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer  192 (194)
T PF15619_consen  129 QLEQKLQEKE----KKIQELEKQLELEN---------KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER  192 (194)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666554    33333332221111         3333444444444444444455555555555544444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.49  E-value=1.3  Score=45.81  Aligned_cols=182  Identities=18%  Similarity=0.173  Sum_probs=112.2

Q ss_pred             HHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 004160          365 LTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE  444 (771)
Q Consensus       365 ~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqE  444 (771)
                      ++|-..+|....-...++-.+|-.   .+...+.--.++..+|..++.++...++.++..           +.++.++..
T Consensus         6 L~~~v~dL~~~n~~L~~en~kL~~---~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a-----------K~l~eEled   71 (193)
T PF14662_consen    6 LLSCVEDLQLNNQKLADENAKLQR---SVETAEEGNAQLAEEITDLRKQLKSLQQALQKA-----------KALEEELED   71 (193)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence            455555666655555555444432   223333333344445555555555444333222           223455555


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160          445 TENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDE  524 (771)
Q Consensus       445 lekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE  524 (771)
                      +...+..++.....|...-.+++.+...+...++.++++-..+....+.++-....|......+..++-+++.-+...+.
T Consensus        72 Lk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da  151 (193)
T PF14662_consen   72 LKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDA  151 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            55556666666666666667777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhhh
Q 004160          525 HVLILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVIS  560 (771)
Q Consensus       525 ~L~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~s  560 (771)
                      .+..-....+++..-+-.+    +++.-.|.++.++|..+
T Consensus       152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7777766667776555444    67777777777777543

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.47  E-value=2.3  Score=52.17  Aligned_cols=77  Identities=13%  Similarity=0.147  Sum_probs=37.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160          450 RVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHV  526 (771)
Q Consensus       450 eelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L  526 (771)
                      +..++.-...+++.+.++..++.+.....++-.+...+...++.-..-+...+....++.+.++++..+....+-..
T Consensus       413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~  489 (980)
T KOG0980|consen  413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT  489 (980)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55555555555555555555555555555555555555544444444444444444444444444444444433333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.41  E-value=3.2  Score=49.46  Aligned_cols=225  Identities=20%  Similarity=0.180  Sum_probs=125.4

Q ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 004160          335 KSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSM----EKELVEEL  410 (771)
Q Consensus       335 ~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlq----lekeIeeL  410 (771)
                      +.+..+.++|.+.....+....+++.+-..-..-+.-|.||..-|.-=..-+.....+..+|..+--.    +..++..+
T Consensus       352 ~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~l  431 (594)
T PF05667_consen  352 KMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRL  431 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            45666777888888888888888888877666666667776655522222222223333333333322    23333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160          411 QNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE--IQNLKSKQASLQLILEEKDFELSNAR  488 (771)
Q Consensus       411 r~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e--iEqLKsEIesLq~ELEEIdeELeeiq  488 (771)
                      +........+......++..++.+++.+..++...+..+..+..++..+-..  ...+..+|-..-..|..=+.+|..+-
T Consensus       432 k~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl  511 (594)
T PF05667_consen  432 KEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKIL  511 (594)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3333333334444444455555555555555555555555544444444433  33445555555555555555556666


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-------HHHHHHHHHHHHHHhh
Q 004160          489 QMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-------ETVVEQIVDLTHKLVI  559 (771)
Q Consensus       489 rrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-------Etl~eRIeeLt~eLe~  559 (771)
                      .....++.+++.+...++.--....++==.=-.+++....+.--|..++-.|.++       -++.+.|-++..+|..
T Consensus       512 ~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~  589 (594)
T PF05667_consen  512 SDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDT  589 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            6666666666666665555333322222222226677777777788888888887       3677788888888774

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.40  E-value=3  Score=49.06  Aligned_cols=362  Identities=19%  Similarity=0.230  Sum_probs=189.5

Q ss_pred             HHhHhhHHHHH-HHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHH
Q 004160          100 EILESDLQAVL-AALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIED  178 (771)
Q Consensus       100 ~~l~s~~~~~l-~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~  178 (771)
                      +-+..++.-.. ..+-.=|+.|-+||.-  .+..++..|+..+..-+..|..+-.....+..+|...-..=-.+-..|..
T Consensus        63 e~w~~~w~~i~~~~~~~ie~~L~~ae~~--~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~  140 (560)
T PF06160_consen   63 EEWRQKWDEIVTKQLPEIEEQLFEAEEY--ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEE  140 (560)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444554444 4566667888888876  68899999999999999999999999999999999887777778888999


Q ss_pred             HHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHH
Q 004160          179 LKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEE  258 (771)
Q Consensus       179 lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~  258 (771)
                      |+...+.--+.+.+-...++.-...+++.=.++-..-.+...+-    . ..=-.+|.+++..-+..+..|..-+..-=.
T Consensus       141 l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt----~-~GD~~~A~eil~~l~~~~~~l~~~~e~IP~  215 (560)
T PF06160_consen  141 LKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELT----E-NGDYLEAREILEKLKEETDELEEIMEDIPK  215 (560)
T ss_pred             HHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHH----H-CCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999998888888887766544433222221111    0 112346777777777777777666654332


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhH
Q 004160          259 ELEASVALRKVEEEKLKVVEANLEKRT--MEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKS  336 (771)
Q Consensus       259 ~~~~~~~~~k~~~ekl~~~e~~le~~~--~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~  336 (771)
                      =+......=--.=+.|+-.=..+..+.  ..-+-.-.+++.+.+........++..  ++..|...++.+-.++-.--..
T Consensus       216 l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~  293 (560)
T PF06160_consen  216 LYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDI  293 (560)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHH
Confidence            222211110000111111112222211  111223344444443333333333221  4445555555444444333222


Q ss_pred             H---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          337 L---ASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNE  413 (771)
Q Consensus       337 ~---~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~q  413 (771)
                      |   ..+|..++..-..+...+.++..+=.-++.=+..+...=.=-.++....       ..+..++..+.+....+...
T Consensus       294 le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~-------~~l~~~l~~l~~~~~~~~~~  366 (560)
T PF06160_consen  294 LEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV-------RELEKQLKELEKRYEDLEER  366 (560)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            2   2456666666666666666655554444332222222211112222222       33333333344444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          414 LNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLIL  477 (771)
Q Consensus       414 LqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~EL  477 (771)
                      +......+-.+...+..+...+..++.+...+...+..+...-..++..+..++..+......+
T Consensus       367 i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l  430 (560)
T PF06160_consen  367 IEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL  430 (560)
T ss_pred             HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444444444444444443333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.34  E-value=3.7  Score=50.47  Aligned_cols=16  Identities=31%  Similarity=0.326  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHhh
Q 004160          694 TSALQKLTEMSGELLN  709 (771)
Q Consensus       694 t~~l~kl~~~s~~~l~  709 (771)
                      +.|..-|+.-|+.|=+
T Consensus       797 m~aI~~Lv~as~~lQ~  812 (980)
T KOG0980|consen  797 MEAIMALVKASRELQT  812 (980)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3455556665655543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.27  E-value=5.4  Score=50.62  Aligned_cols=140  Identities=21%  Similarity=0.271  Sum_probs=67.5

Q ss_pred             HhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHH
Q 004160          231 MLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKV---EEEKLKVVEANLEKRTMEWLLSQDALK---KLAEEASR  304 (771)
Q Consensus       231 ~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~---~~ekl~~~e~~le~~~~~wl~~q~elk---~l~~~a~k  304 (771)
                      -..++++-+..-+++++.|...++.++++++....-..-   ..+|+-...+.|+.+..+.-+.=+..+   +..++.|+
T Consensus       495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~  574 (1317)
T KOG0612|consen  495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSK  574 (1317)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhH
Confidence            345556666666777777777777777777655322211   244555556666666665554333333   33445555


Q ss_pred             hhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhH
Q 004160          305 RMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQV  377 (771)
Q Consensus       305 ~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~  377 (771)
                      .+....+-..||       .+-.+.|..|...+.--.++...-......|.-++.+-+.-+-.=+.+|..++.
T Consensus       575 ~iq~~~e~~~~~-------~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~  640 (1317)
T KOG0612|consen  575 QIQQELEENRDL-------EDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLK  640 (1317)
T ss_pred             HHHHHhhccccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            555444422222       223333444444444333333333333333333444444444444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.23  E-value=0.71  Score=50.54  Aligned_cols=120  Identities=21%  Similarity=0.307  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHH-HHHHHHHHHHHHHHHHHH
Q 004160          320 KKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVE-SERVKLRVTEARNKELER  398 (771)
Q Consensus       320 ~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~-~~~~~l~~aqsE~kELEr  398 (771)
                      .++++.+...|...-..|..-...+.....++...+..+...+..|+.=..+|+.+..++. .-..+|+.++.++..+..
T Consensus       144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~  223 (325)
T PF08317_consen  144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKE  223 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHH
Confidence            5788889988888888888888888888888888888888888888888888888887766 345566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004160          399 DLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKN  439 (771)
Q Consensus       399 qLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqele  439 (771)
                      .+...+.++..++.++......++.+..++..+..++..++
T Consensus       224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666665555555555555555443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.02  E-value=5.1  Score=48.04  Aligned_cols=53  Identities=17%  Similarity=0.250  Sum_probs=27.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004160          323 LSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDA  375 (771)
Q Consensus       323 l~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a  375 (771)
                      |..+..|-----..+...+..+.+.-.+|..++..|..-+...++....|+.-
T Consensus         6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~s   58 (617)
T PF15070_consen    6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERS   58 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444555555555566666666666666665555555443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.96  E-value=5.2  Score=47.67  Aligned_cols=45  Identities=20%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          322 LLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLT  366 (771)
Q Consensus       322 ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~  366 (771)
                      =+++++.++.++-..++..|.+++.+-..++.++.+...+...+.
T Consensus       245 ~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~  289 (650)
T TIGR03185       245 SLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA  289 (650)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555556666677777788888888888888777777765444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.92  E-value=2.6  Score=46.18  Aligned_cols=12  Identities=33%  Similarity=0.390  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 004160          348 EHLLGKQLVELE  359 (771)
Q Consensus       348 ~~~l~~q~~el~  359 (771)
                      -..++.++.-+.
T Consensus        83 l~~l~~~~~~l~   94 (423)
T TIGR01843        83 AAELESQVLRLE   94 (423)
T ss_pred             HHHHHHHHHHHH
Confidence            333344433333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.87  E-value=3.4  Score=44.76  Aligned_cols=158  Identities=12%  Similarity=0.181  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160          386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQN  465 (771)
Q Consensus       386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEq  465 (771)
                      +....+.+.+++.....++++|..|.+++............++...+.++..++.+|..+...|...+..+..=-.....
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~  112 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV  112 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777777777777777777777777777777777777777777777777777777776655544332111110


Q ss_pred             HH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004160          466 LK------------SKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNEL  533 (771)
Q Consensus       466 LK------------sEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~EL  533 (771)
                      --            ..+..+-.++--+..=+.--..-+.........|+.....+++.+..+.....+.+..+..+.++.
T Consensus       113 nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk  192 (265)
T COG3883         113 NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQK  192 (265)
T ss_pred             cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00            011122222222222222223333334444445555555555555555555555555555555555


Q ss_pred             hhhhhhHHHH
Q 004160          534 DGTKLKVSEA  543 (771)
Q Consensus       534 Ne~nIe~sQq  543 (771)
                      ++.+.-+..+
T Consensus       193 ~e~~~l~~~~  202 (265)
T COG3883         193 AEKNALIAAL  202 (265)
T ss_pred             HHHHHHHHHH
Confidence            5555554444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.71  E-value=5.2  Score=48.97  Aligned_cols=101  Identities=19%  Similarity=0.263  Sum_probs=58.1

Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHH
Q 004160          314 EDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARN  393 (771)
Q Consensus       314 ~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~  393 (771)
                      +..+---+=|.--+.+|-+-=.-+.|+..||.+|--.|+.|+--..   ...-+|.+-.++    ....-..|+.++.++
T Consensus       674 e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~---~~~~~~~q~~e~----~~t~~eel~a~~~e~  746 (970)
T KOG0946|consen  674 ENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS---SKQRDLLQGAEA----SKTQNEELNAALSEN  746 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchhhHHhHHHh----ccCChHHHHHHHHHH
Confidence            3333344445556667776667777777777777777777765221   111122221111    233445677778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          394 KELERDLSMEKELVEELQNELNKEKYSL  421 (771)
Q Consensus       394 kELErqLlqlekeIeeLr~qLqkekqeL  421 (771)
                      +.+..+.--+.+++......+...+..-
T Consensus       747 k~l~~~q~~l~~~L~k~~~~~es~k~~~  774 (970)
T KOG0946|consen  747 KKLENDQELLTKELNKKNADIESFKATQ  774 (970)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            8887777777777765555555544443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.69  E-value=4  Score=44.72  Aligned_cols=27  Identities=11%  Similarity=0.225  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          407 VEELQNELNKEKYSLQQAIDEVSSLQE  433 (771)
Q Consensus       407 IeeLr~qLqkekqeLEelqeEIesLQe  433 (771)
                      +..++.++...+.++..+..++...+.
T Consensus       146 ~~~l~~~i~~~~~~i~~~~~~l~~~~~  172 (423)
T TIGR01843       146 LELILAQIKQLEAELAGLQAQLQALRQ  172 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=95.67  E-value=9.2  Score=48.31  Aligned_cols=12  Identities=25%  Similarity=0.271  Sum_probs=5.9

Q ss_pred             ChhhHHHHHHHH
Q 004160          653 DANDLRKLYALA  664 (771)
Q Consensus       653 d~~d~~~~~~~~  664 (771)
                      ....+..|+.+.
T Consensus       875 ~~~~~~~L~~l~  886 (1047)
T PRK10246        875 QVEDWGYLNSLI  886 (1047)
T ss_pred             HHHHHHHHHHHh
Confidence            334455555554

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.66  E-value=3  Score=45.21  Aligned_cols=59  Identities=15%  Similarity=0.119  Sum_probs=41.1

Q ss_pred             hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHH
Q 004160          582 QGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKEL  644 (771)
Q Consensus       582 qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el  644 (771)
                      ..+......++.....++..+..+-....++|..+..+...+    .|++.++.-+-+.+...
T Consensus       151 e~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk----~e~~~l~~~~aa~~a~~  209 (265)
T COG3883         151 EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQK----AEKNALIAALAAKEASA  209 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence            555566667777777777788887778887777776666554    56777777777755443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.59  E-value=2.3  Score=40.87  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160          463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEH  525 (771)
Q Consensus       463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~  525 (771)
                      +..++.++..++..+..+......+...+.....   ....+...++..+.++...+.++..+
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~Q  120 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNEQ  120 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444333333333333333   22233333444444444444444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=95.53  E-value=8.1  Score=46.69  Aligned_cols=35  Identities=40%  Similarity=0.426  Sum_probs=25.8

Q ss_pred             HhhhhChhhHHHHHHHHhhhhcccccchhHHHHHhHHHhhHHHHH
Q 004160          648 EETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEA  692 (771)
Q Consensus       648 ~~~~~d~~d~~~~~~~~~e~~~~~~~~~~~~~~l~~eaa~~e~~a  692 (771)
                      +..-+..++++.=|..+||          +|+.|+-++++++++-
T Consensus       721 e~e~nr~~~~~~e~~~~qe----------E~~~l~~r~~~le~e~  755 (961)
T KOG4673|consen  721 EKERNRAAENRQEYLAAQE----------EADTLEGRANQLEVEI  755 (961)
T ss_pred             HHHHHHHhhhHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence            5555677888888888875          4777888888877664

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.51  E-value=4.9  Score=44.13  Aligned_cols=205  Identities=21%  Similarity=0.287  Sum_probs=109.2

Q ss_pred             HHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 004160          326 VRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLS---M  402 (771)
Q Consensus       326 vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLl---q  402 (771)
                      -|-||+.-=.++++-|...-.+..-+-.+..++-.+|.-+.-=..-|++=+-++-++...|+   +.+..+.+...   .
T Consensus        28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~---~~~~~l~e~~~~~~~  104 (294)
T COG1340          28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR---KEYRELKEKRNEFNL  104 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhc
Confidence            34666666677888888888888888888888888888888877777777777766665543   33333333333   1


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160          403 EKELVEELQNELNKEKYSLQ----------QAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQAS  472 (771)
Q Consensus       403 lekeIeeLr~qLqkekqeLE----------elqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIes  472 (771)
                      ---.+..++..+..+..-.+          .+...+..|..++... ....+....+..+..+...+...-..+..+|..
T Consensus       105 ~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~-~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~  183 (294)
T COG1340         105 GGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDA-KKALEENEKLKELKAEIDELKKKAREIHEKIQE  183 (294)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12223333333333332222          1223344445544332 222233334444444444444444444444444


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004160          473 LQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS  541 (771)
Q Consensus       473 Lq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~s  541 (771)
                      +-++.+++-.++...-+..+       ++....+.+-....++..+.++..+.+...+++|.+++..+.
T Consensus       184 la~eaqe~he~m~k~~~~~D-------e~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik  245 (294)
T COG1340         184 LANEAQEYHEEMIKLFEEAD-------ELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK  245 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444       444444444444555555555555555555555555554444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.45  E-value=7.7  Score=45.93  Aligned_cols=171  Identities=27%  Similarity=0.313  Sum_probs=108.0

Q ss_pred             hHHHHHHHhhhhHHHH-HhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhH
Q 004160          155 HEKLEEELGQSNLKLV-SQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLN  233 (771)
Q Consensus       155 ~~~~e~~l~~~~~~l~-~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~  233 (771)
                      ...++++++.--.+.. +.+.+|++++...++-...|. .....+.+..-+.+-+..|-.-.--.--.-+.+++|.|-+ 
T Consensus       215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~-  292 (581)
T KOG0995|consen  215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM-  292 (581)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH-
Confidence            3567778876555555 499999999999999999998 5566777777777777766554444555566777776654 


Q ss_pred             HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Q 004160          234 EANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTL  313 (771)
Q Consensus       234 ~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~  313 (771)
                               +..|..|+++|++||++++.....++           .|.++.        |+.             .=++
T Consensus       293 ---------~~~l~~l~~Eie~kEeE~e~lq~~~d-----------~Lk~~I--------e~Q-------------~iS~  331 (581)
T KOG0995|consen  293 ---------EKKLEMLKSEIEEKEEEIEKLQKEND-----------ELKKQI--------ELQ-------------GISG  331 (581)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--------Hhc-------------CCCH
Confidence                     45688999999999999876543221           221111        111             2234


Q ss_pred             HhHHHHH-------HHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          314 EDFRRVK-------KLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSY  368 (771)
Q Consensus       314 ~df~rv~-------~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~  368 (771)
                      +||+|..       .-|+.+.+++-.=.+..=.-.-+++++-..+++++.++..+.--+..-
T Consensus       332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~  393 (581)
T KOG0995|consen  332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG  393 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444433       233444444444444444445567777778888888887765544433

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.44  E-value=11  Score=47.41  Aligned_cols=40  Identities=23%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          385 KLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA  424 (771)
Q Consensus       385 ~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEel  424 (771)
                      +|..++.+..+|+.....-+..+..|.-.++++.+..+..
T Consensus       182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~  221 (1072)
T KOG0979|consen  182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV  221 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555555555555555544443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.41  E-value=3.8  Score=46.77  Aligned_cols=20  Identities=25%  Similarity=0.298  Sum_probs=9.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHH
Q 004160          339 SSRKQMEEQEHLLGKQLVEL  358 (771)
Q Consensus       339 ~sr~~~e~q~~~l~~q~~el  358 (771)
                      +++.-++.|-..++.++.+.
T Consensus       161 ~~~~fl~~ql~~~~~~L~~a  180 (498)
T TIGR03007       161 SAQRFIDEQIKTYEKKLEAA  180 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555554444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=95.39  E-value=4.5  Score=42.88  Aligned_cols=57  Identities=26%  Similarity=0.285  Sum_probs=23.4

Q ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          372 LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEV  428 (771)
Q Consensus       372 l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEI  428 (771)
                      ++++..++.+..-.++..+.....++..+..+..++..+..+.......-..+....
T Consensus        26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t   82 (264)
T PF06008_consen   26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNT   82 (264)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444444433333333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=95.38  E-value=4.2  Score=42.44  Aligned_cols=190  Identities=17%  Similarity=0.198  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004160          406 LVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELS  485 (771)
Q Consensus       406 eIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELe  485 (771)
                      .|..+...+..++..++..+.........+......-.+....+..+++....+..+++.+...+....-.-++-+.+..
T Consensus         5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e   84 (205)
T KOG1003|consen    5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE   84 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555555555555555555555555555555444444454555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhhhc
Q 004160          486 NARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVISN  561 (771)
Q Consensus       486 eiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~s~  561 (771)
                      +..++|.       .+...+...+...+-..+...++++.+..+.+.+..+...--.+    ++....|..++..|....
T Consensus        85 EVarkL~-------iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE  157 (205)
T KOG1003|consen   85 EVARKLV-------IIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE  157 (205)
T ss_pred             HHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence            5555554       44444445555555555555555555555555554444433333    566777777777776554


Q ss_pred             cCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 004160          562 KNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMK  612 (771)
Q Consensus       562 ~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEk  612 (771)
                              ....+.+...  ..|.++++.++..+-.....|..+...|.+.
T Consensus       158 --------~rAE~aERsV--akLeke~DdlE~kl~~~k~ky~~~~~eLD~~  198 (205)
T KOG1003|consen  158 --------TRAEFAERRV--AKLEKERDDLEEKLEEAKEKYEEAKKELDET  198 (205)
T ss_pred             --------hhHHHHHHHH--HHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                    1122336666  7778888888777777777776666655443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=9.2  Score=46.96  Aligned_cols=17  Identities=41%  Similarity=0.427  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004160          344 MEEQEHLLGKQLVELEE  360 (771)
Q Consensus       344 ~e~q~~~l~~q~~el~~  360 (771)
                      -++|...-++-+.++-+
T Consensus       641 ee~~~~~~~k~~e~l~~  657 (970)
T KOG0946|consen  641 EEEQTQLAEKYHEELDD  657 (970)
T ss_pred             cchhhHHHHHHHHHHHH
Confidence            34444444444444433

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=95.34  E-value=4.4  Score=42.44  Aligned_cols=64  Identities=19%  Similarity=0.111  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160          480 KDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA  543 (771)
Q Consensus       480 IdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq  543 (771)
                      +..++.-....+..++.++.....+.+-+.-....+...+...+..+..+++.+|..+..-++.
T Consensus       155 l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~  218 (240)
T PF12795_consen  155 LQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQ  218 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444555555666666666777777777777666655544

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.26  E-value=8.8  Score=45.48  Aligned_cols=16  Identities=19%  Similarity=0.204  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHhhccc
Q 004160          697 LQKLTEMSGELLNKAS  712 (771)
Q Consensus       697 l~kl~~~s~~~l~~~~  712 (771)
                      -+|++.+--.+++...
T Consensus       537 r~ki~~ql~~~i~~i~  552 (581)
T KOG0995|consen  537 RQKIAKQLFAVIDQIS  552 (581)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4566666666665543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.22  E-value=6.1  Score=43.41  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=17.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHH
Q 004160          337 LASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE  378 (771)
Q Consensus       337 ~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e  378 (771)
                      ...+|.-+.+.+...-      .+.=.++--|+.+=.+.+..
T Consensus        84 I~egr~~~~~~E~~~~------~~nPpLf~EY~~a~~d~r~~  119 (325)
T PF08317_consen   84 ISEGRQIFEEIEEETY------ESNPPLFREYYTADPDMRLL  119 (325)
T ss_pred             HHHHHHHHHHHHHHHh------hcCCHHHHHHHcCCHHHHHH
Confidence            4455555555444432      22233555677765554443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.22  E-value=4.5  Score=41.88  Aligned_cols=19  Identities=21%  Similarity=0.393  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004160          508 REEQLVQAMDTLQEKDEHV  526 (771)
Q Consensus       508 LEgqLeEleeeLkEkEE~L  526 (771)
                      ++..+..+.+.+...+.++
T Consensus       148 LEkKl~~l~~~lE~keaqL  166 (201)
T PF13851_consen  148 LEKKLQALSEQLEKKEAQL  166 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.12  E-value=2.6  Score=46.45  Aligned_cols=57  Identities=26%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             HhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160          435 LGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQML  491 (771)
Q Consensus       435 LqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrL  491 (771)
                      +..+..++......+....+.+..++.++..+...|+.....+.++..+|..+.+.+
T Consensus       206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.88  E-value=5.7  Score=41.30  Aligned_cols=187  Identities=16%  Similarity=0.157  Sum_probs=90.7

Q ss_pred             HHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          328 SELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELV  407 (771)
Q Consensus       328 ~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeI  407 (771)
                      |+|+|+=..|..+-++..++-..|+-.+.-.++==.-+..          ++..=+.+++-.    ..+-...-.+..++
T Consensus         4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~----------e~~~L~~q~~s~----Qqal~~aK~l~eEl   69 (193)
T PF14662_consen    4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAE----------EITDLRKQLKSL----QQALQKAKALEEEL   69 (193)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            5677777888888877777777777666554442221111          111111111111    11112222234444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160          408 EELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNA  487 (771)
Q Consensus       408 eeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeei  487 (771)
                      +++......++.....+...-..+..+-+.+..++..++..-..+..+...++.+..++......++..+=.+..=+..-
T Consensus        70 edLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~  149 (193)
T PF14662_consen   70 EDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQR  149 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160          488 RQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLI  528 (771)
Q Consensus       488 qrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~  528 (771)
                      ..-+.+....+..++.-+..+-.-..++......+++++.+
T Consensus       150 da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q  190 (193)
T PF14662_consen  150 DAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ  190 (193)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555555555555555555555555555555555543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.85  E-value=7.9  Score=42.76  Aligned_cols=46  Identities=17%  Similarity=0.070  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHH
Q 004160          416 KEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKL  461 (771)
Q Consensus       416 kekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~  461 (771)
                      .+...++.+..+...|...+..++.-+-.+....+.++.++..++.
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~  193 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ  193 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333344444433333334444444444444444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.85  E-value=12  Score=44.94  Aligned_cols=167  Identities=19%  Similarity=0.156  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160          319 VKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELER  398 (771)
Q Consensus       319 v~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELEr  398 (771)
                      ..+||..+.|+-+..--|        -.|-..|+.||.||.+-=..+.  ..++. -..-.+++.--.+.+...+.+++.
T Consensus       141 ~~kLLe~lqsdk~t~SRA--------lsQN~eLK~QL~Elq~~Fv~lt--ne~~e-lt~~lq~Eq~~~keL~~kl~~l~~  209 (617)
T PF15070_consen  141 RQKLLEQLQSDKATASRA--------LSQNRELKEQLAELQDAFVKLT--NENME-LTSALQSEQHVKKELQKKLGELQE  209 (617)
T ss_pred             HHHHHhhhcccchHHHHH--------HHhHHHHHHHHHHHHHHHHHHH--HhhhH-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            566888887776654333        3456689999999987443333  22211 112233333333444444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          399 DLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILE  478 (771)
Q Consensus       399 qLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELE  478 (771)
                      .+-.+...+......+..+.+....+...+.......+.+..+...+.+.+-....-+..++....+-+-.++....++.
T Consensus       210 ~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq  289 (617)
T PF15070_consen  210 KLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQ  289 (617)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            55555555555544444444444433333333333333333444444444333333344444433333333334444444


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 004160          479 EKDFELSNARQMLEELNN  496 (771)
Q Consensus       479 EIdeELeeiqrrLeeLr~  496 (771)
                      ...+.|......-..++.
T Consensus       290 ~~qe~Lea~~qqNqqL~~  307 (617)
T PF15070_consen  290 EAQEHLEALSQQNQQLQA  307 (617)
T ss_pred             HHHHHHHHHHhhhHHHHH
Confidence            444444444444433333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.69  E-value=2.4  Score=42.44  Aligned_cols=42  Identities=19%  Similarity=0.359  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          391 ARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQ  432 (771)
Q Consensus       391 sE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQ  432 (771)
                      .+..+.+..+..+..++..++..+..+...+.....+.....
T Consensus        81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444444444444444444444444444444443333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.67  E-value=6.7  Score=41.12  Aligned_cols=192  Identities=16%  Similarity=0.166  Sum_probs=142.9

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          322 LLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLS  401 (771)
Q Consensus       322 ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLl  401 (771)
                      .+..|+.|+.++......-++++++.       .......+..|..|.......=.+.+..   -.....++..+....-
T Consensus        10 ~~~~~~~e~~~~E~e~~~l~~k~~e~-------~~~~~~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erd   79 (207)
T PF05010_consen   10 AIKKVQEEVAEKEEEEQELKKKYEEL-------HKENQEMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERD   79 (207)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHH
Confidence            45667777777776666666665543       3445567888888888665544333222   3344677778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160          402 MEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKD  481 (771)
Q Consensus       402 qlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEId  481 (771)
                      ++...+..++.....+-.+++....-+..++..-..+...+.+....+....+.+..|+..   ....+.....+|..+.
T Consensus        80 q~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h---AeekL~~ANeei~~v~  156 (207)
T PF05010_consen   80 QAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH---AEEKLEKANEEIAQVR  156 (207)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999998888888888889999998888888888654   3466666666666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160          482 FELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLIL  529 (771)
Q Consensus       482 eELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~  529 (771)
                         ......+.+++..+......+.+++..+.+-+....++....+++
T Consensus       157 ---~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  157 ---SKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             ---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               445566777788888889999999999999888888876665544

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.62  E-value=11  Score=43.38  Aligned_cols=178  Identities=16%  Similarity=0.256  Sum_probs=93.9

Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------HHHhHH
Q 004160          314 EDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSL---------------KDAQVE  378 (771)
Q Consensus       314 ~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l---------------~~a~~e  378 (771)
                      +..+.++.=+..|.-+|+.|...+.-.+++|.+....|..=...-..||..+--|...+               ++|+-.
T Consensus        66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~  145 (420)
T COG4942          66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRS  145 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHH
Confidence            34444555566677778888888888888887777766543333355555444332221               233322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160          379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE  458 (771)
Q Consensus       379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee  458 (771)
                      +.. .+-++..-....+.-..+......|...+..+...+.++.....+.   ..+...+...+.+-.+....++..+..
T Consensus       146 ~R~-ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq---~~q~~kl~~~~~E~kk~~~~l~~~l~~  221 (420)
T COG4942         146 VRL-AIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQ---RAQQAKLAQLLEERKKTLAQLNSELSA  221 (420)
T ss_pred             HHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221 1233444444444555555555566666666666666655554443   233333333444444455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160          459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELN  495 (771)
Q Consensus       459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr  495 (771)
                      -+.+++++...-..+...|..+..+....+..-++.+
T Consensus       222 ~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~  258 (420)
T COG4942         222 DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAE  258 (420)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555666655555554444444333

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.53  E-value=16  Score=44.97  Aligned_cols=237  Identities=21%  Similarity=0.162  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          320 KKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERD  399 (771)
Q Consensus       320 ~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErq  399 (771)
                      +.+|+||+..|-....+....+-....     ..-..-|.++-.++..-...|..|-..|.--..-|...-.-|..+-..
T Consensus       457 ~~ILedI~~al~~~~~~~~~~~~~~~~-----~~~~~sL~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsg  531 (769)
T PF05911_consen  457 SEILEDIEIALDSINNSSNCDDDSEEY-----ESMEASLVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSG  531 (769)
T ss_pred             HHHHHHHHHHHHhhccccccccccchh-----hhhhhhHHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence            367777777776555443333322221     123345566666666666677777766644455555555556665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHH-------hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160          400 LSMEKELVEELQNELNKEKYSLQQAID---EVSSLQEELGRK-------NTEFGETENLLRVKESDLVEAKLEIQNLKSK  469 (771)
Q Consensus       400 LlqlekeIeeLr~qLqkekqeLEelqe---EIesLQeELqel-------ekELqElekeIeelEnELeeLq~eiEqLKsE  469 (771)
                      ...+++.|.++..-++..-..-..+..   ..+.++..+...       .............+..+++.+......+...
T Consensus       532 kadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~  611 (769)
T PF05911_consen  532 KADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEME  611 (769)
T ss_pred             hhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665555544333222222   333333332211       1111223334445556666666666666666


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH------
Q 004160          470 QASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA------  543 (771)
Q Consensus       470 IesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq------  543 (771)
                      +...+..++....+|.+....+..++.++..++.....++.++.-..+.++.++.++..+..+++.+..++..+      
T Consensus       612 L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~  691 (769)
T PF05911_consen  612 LASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEK  691 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666677777777777777777777777777777777777777777777777777777777777666666665      


Q ss_pred             -----HHHHHHHHHHHHHHhhhc
Q 004160          544 -----ETVVEQIVDLTHKLVISN  561 (771)
Q Consensus       544 -----Etl~eRIeeLt~eLe~s~  561 (771)
                           .+...+-.++..+|+...
T Consensus       692 er~~~~e~~~kc~~Le~el~r~~  714 (769)
T PF05911_consen  692 ERALSEELEAKCRELEEELERMK  714 (769)
T ss_pred             HHhcchhhhhHHHHHHHHHHhhh
Confidence                 233344445555555443

The function of this family is unknown.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.49  E-value=4.1  Score=39.19  Aligned_cols=108  Identities=23%  Similarity=0.310  Sum_probs=70.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHH---hhhHHHhHHHHHHHHHHHHHHHhhhhh
Q 004160          259 ELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEE---TNDTLEDFRRVKKLLSDVRSELVSSQK  335 (771)
Q Consensus       259 ~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~---~~~~~~df~rv~~ll~~vr~el~~s~~  335 (771)
                      ++.........-..++..+..+|+.+.--|=.||.=   ...+..+|...   +...=++|-.++.-+...+.+.-+++.
T Consensus        11 e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~---YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~   87 (132)
T PF07926_consen   11 ELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK---YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA   87 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444567888889999999999888863   34444444443   333345566667777777777778888


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          336 SLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYM  369 (771)
Q Consensus       336 ~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~  369 (771)
                      .|..++..+++|...|++++.++.....-+...+
T Consensus        88 ~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN  121 (132)
T PF07926_consen   88 ELEESEASWEEQKEQLEKELSELEQRIEDLNEQN  121 (132)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887777777777777766665555554443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR00634 recN DNA repair protein RecN

Probab=94.46  E-value=11  Score=44.32  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=41.3

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhH---H
Q 004160          440 TEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQ-------MLEELNNEVRELKMIMSSR---E  509 (771)
Q Consensus       440 kELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqr-------rLeeLr~ELkELKslIesL---E  509 (771)
                      ..+.++...+......+.++...+..+.+.++.--.+++++..++..+..       .++++...+..++..+..+   +
T Consensus       266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~  345 (563)
T TIGR00634       266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSD  345 (563)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCH
Confidence            33444444444444444444444444444443333444444444444443       2333333333333333332   3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004160          510 EQLVQAMDTLQEKDEHVLILQNELDGTKLK  539 (771)
Q Consensus       510 gqLeEleeeLkEkEE~L~~~q~ELNe~nIe  539 (771)
                      +.+.++...+......+...-..|+..|.+
T Consensus       346 ~~le~L~~el~~l~~~l~~~a~~Ls~~R~~  375 (563)
T TIGR00634       346 ESLEALEEEVDKLEEELDKAAVALSLIRRK  375 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=94.34  E-value=21  Score=45.34  Aligned_cols=35  Identities=9%  Similarity=0.030  Sum_probs=22.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          587 GNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKR  621 (771)
Q Consensus       587 ereeLeeel~eLEqEleelReeLrEkE~eLrelrR  621 (771)
                      ..+.+...+..+++.+......+..+...+.....
T Consensus       823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  857 (1047)
T PRK10246        823 TVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDAD  857 (1047)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777777666666555433

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.15  E-value=14  Score=44.66  Aligned_cols=19  Identities=11%  Similarity=0.170  Sum_probs=8.6

Q ss_pred             HHhHHHHHHHHHHHHHHHh
Q 004160          313 LEDFRRVKKLLSDVRSELV  331 (771)
Q Consensus       313 ~~df~rv~~ll~~vr~el~  331 (771)
                      -.|=.+...+++.|=...+
T Consensus       163 ~~dP~~Aa~iaN~la~~Y~  181 (754)
T TIGR01005       163 SEDPKLAAAIPDAIAAAYI  181 (754)
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            3344444455554444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=94.14  E-value=9.2  Score=40.57  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=8.3

Q ss_pred             HHHHHHhhhhhHHHHHHHhH
Q 004160          325 DVRSELVSSQKSLASSRKQM  344 (771)
Q Consensus       325 ~vr~el~~s~~~~~~sr~~~  344 (771)
                      ++..+|......+...+.++
T Consensus        28 ~~~~~L~~~~~~~~~~~~~~   47 (264)
T PF06008_consen   28 DLTNQLRSYRSKLNPQKQQL   47 (264)
T ss_pred             HHHHHHHHHhccchhHHHHH
Confidence            44444444444444433333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.12  E-value=9.5  Score=43.50  Aligned_cols=6  Identities=33%  Similarity=0.612  Sum_probs=2.3

Q ss_pred             cCCcch
Q 004160          568 TSMPTD  573 (771)
Q Consensus       568 I~qlkd  573 (771)
                      |..+-+
T Consensus       319 I~AP~d  324 (457)
T TIGR01000       319 IKAPED  324 (457)
T ss_pred             EECCCC
Confidence            333333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.10  E-value=8.9  Score=40.24  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004160          544 ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL  623 (771)
Q Consensus       544 Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL  623 (771)
                      +++..-++++..++....    .....++.+....|  ....   .++..-...+..+.-.++..|+.-++.+..+.+.+
T Consensus       114 E~Lkk~~~ey~~~l~~~e----qry~aLK~hAeekL--~~AN---eei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~L  184 (207)
T PF05010_consen  114 ETLKKCIEEYEERLKKEE----QRYQALKAHAEEKL--EKAN---EEIAQVRSKHQAELLALQASLKKEEMKVQSLEESL  184 (207)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666555    44444445544444  3333   33334445667777788888888888888888877


Q ss_pred             ccchHHH
Q 004160          624 TVKDEEL  630 (771)
Q Consensus       624 ~~kd~el  630 (771)
                      ..|..|.
T Consensus       185 eQK~kEn  191 (207)
T PF05010_consen  185 EQKTKEN  191 (207)
T ss_pred             HHHHHHH
Confidence            7776553

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.02  E-value=6.9  Score=41.00  Aligned_cols=27  Identities=22%  Similarity=0.011  Sum_probs=17.9

Q ss_pred             hhhhhhhhHhhhhHHHHHHHHcCcccc
Q 004160          742 LTEVGSEVARLSVLTEQLVKEAGIVDG  768 (771)
Q Consensus       742 ~~~~~~~v~~l~~lt~ql~~~ag~~~~  768 (771)
                      ......+|.-|.-=-.||..--||...
T Consensus       254 ~~~f~~~v~lLn~nI~~L~~~q~~~~~  280 (302)
T PF10186_consen  254 RQRFEYAVFLLNKNIAQLCFSQGIDVP  280 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            344556677777777777776676654

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.01  E-value=25  Score=45.03  Aligned_cols=309  Identities=19%  Similarity=0.215  Sum_probs=152.7

Q ss_pred             hhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHH-hHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-
Q 004160          197 LSLKELELEKMRSELLKKSEEAAKIDSELKSKAQM-LNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKL-  274 (771)
Q Consensus       197 ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~-l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl-  274 (771)
                      |..|..|.+...    ..-.+|-.--||.+.|+|. |..||--.-|-+.-.++|+.-|+.--.=|.    ..++--+-+ 
T Consensus      1424 l~~~~ae~eq~~----~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt----~~~adp~si~ 1495 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTL----SMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLT----QPDADPDSIE 1495 (1758)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCHHHHH
Confidence            333444554433    3334566666888888874 667888888888888898888875432221    111111111 


Q ss_pred             HHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHhh------H-HhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Q 004160          275 KVVEANLEKRTMEWL-LSQDALKKLAEEASRRM------E-ETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEE  346 (771)
Q Consensus       275 ~~~e~~le~~~~~wl-~~q~elk~l~~~a~k~~------~-~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~  346 (771)
                      -||+.-|..    || +.-+++--|.......+      + =+..|--|..|+..|+.+-+.         |  |+.-++
T Consensus      1496 ~vA~~vL~l----~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~---------a--~~~A~~ 1560 (1758)
T KOG0994|consen 1496 EVAEEVLAL----ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAER---------A--RSRAED 1560 (1758)
T ss_pred             HHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHH---------H--HhHHHH
Confidence            133333332    22 12223333332221111      1 134566677777776654321         1  111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          347 QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAID  426 (771)
Q Consensus       347 q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqe  426 (771)
                      -..+.+.=++       .+.--....-.|+--|++--..++.+++.+-..++...-.+..+.....++..+...++.+..
T Consensus      1561 v~~~ae~V~e-------aL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1561 VKGQAEDVVE-------ALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111       111122233344455555555555555555555555555555555555555555555444444


Q ss_pred             HHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          427 EVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMS  506 (771)
Q Consensus       427 EIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIe  506 (771)
                      +       ..+...+-.+.++..-.....-.+++...+.+++..+.....++..-+.-...+++.+.++++-..|-..-.
T Consensus      1634 ~-------~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1634 K-------AAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQAN 1706 (1758)
T ss_pred             H-------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            4       333333334444444455555555555555666666666666666666666666666666666665555555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 004160          507 SREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSE  542 (771)
Q Consensus       507 sLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQ  542 (771)
                      ..-+.+.+++..+...+..|.....+|..++.++.+
T Consensus      1707 ~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1707 EKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence            555555555555555555555555555555544433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=19  Score=43.81  Aligned_cols=370  Identities=19%  Similarity=0.181  Sum_probs=185.3

Q ss_pred             chHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhH--hHHHHHHhH--HHHHHHHHhhHHHHHHHhhhhHHHHHh
Q 004160           97 LNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNR--AKEELLRRE--REIDVACSRHEKLEEELGQSNLKLVSQ  172 (771)
Q Consensus        97 ~~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~--~k~~l~~re--~~i~~a~~~~~~~e~~l~~~~~~l~~q  172 (771)
                      ..++-|..++.-.+..+.+-..+|.-+.-.|......+-.  --+.|...-  ..=..+..+       .++..-.+++.
T Consensus       167 ~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l~~~~~~~~e~~~~~~-------~~~lee~~~~~  239 (698)
T KOG0978|consen  167 EELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEELQRKTMESDEAINSKK-------VIKLEEKLAQC  239 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhcccccchhhhhhccch-------HHHHHHHHHHH
Confidence            3455666666666666666666664444444332222110  012222211  111112222       33444456666


Q ss_pred             hhhhHHHHHHhhhhH------HHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHH-----------
Q 004160          173 ARHIEDLKLRLKERD------QEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEA-----------  235 (771)
Q Consensus       173 ~~~i~~lk~~~~~~~------~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~a-----------  235 (771)
                      +.+-+++........      ..|.+.-..|+....+++++-.+++.+..+.+-=-+.++...+-+...           
T Consensus       240 ~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l  319 (698)
T KOG0978|consen  240 VKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESL  319 (698)
T ss_pred             HHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHH
Confidence            666666665554443      445566677888888888888888776655544444444433332221           


Q ss_pred             --------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhH
Q 004160          236 --------NEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRME  307 (771)
Q Consensus       236 --------n~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~  307 (771)
                              ++--..+...+-.+++..+.+..-+. ...--..+..=+.++...+-+.  -|+... .++-+-....--.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~k~~di~~~k~el~~~--~~~~le-~~k~~~ke~~~~~~  395 (698)
T KOG0978|consen  320 LDKIQDLISQEAELSKKLRSKLLESAKKLKILLR-EKDRESQKERDILVAKSELLKT--NELRLE-MLKSLLKEQRDKLQ  395 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHhhhhHhHHHHHHHHHHH--HHHHHH-HHhCCCHHHHhHHH
Confidence                    22222222222233333333333332 1111223333455566555554  344332 23333222222111


Q ss_pred             --HhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHhHHHH
Q 004160          308 --ETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSR-KQMEEQEHLLGKQLVELEEQKKSLTSYMTSLK----DAQVEVE  380 (771)
Q Consensus       308 --~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr-~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~----~a~~e~~  380 (771)
                        -..++...-.|++.+..+-|+++.--..-++..| .+..++..-|++......    -+.+=|+..-    +-|..+.
T Consensus       396 ~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k----~ll~e~~t~gsA~ed~Qeqn~  471 (698)
T KOG0978|consen  396 VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK----CLLSEMETIGSAFEDMQEQNQ  471 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence              4567888888999999999998763333333221 255566666666666665    3344444444    4445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHH
Q 004160          381 SERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAK  460 (771)
Q Consensus       381 ~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq  460 (771)
                      .-.++|+.....++.+=...-.......-|+...+.+....-.+......+...+..++....-+......+..++..+.
T Consensus       472 kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~  551 (698)
T KOG0978|consen  472 KLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLT  551 (698)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Confidence            55666777777777776666666666666666666665555555555555555555444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhHH
Q 004160          461 LEIQNLKSKQASLQLILEEKD  481 (771)
Q Consensus       461 ~eiEqLKsEIesLq~ELEEId  481 (771)
                      ..++..+.....+......++
T Consensus       552 ~~le~~kk~~~e~~~~~~~Lq  572 (698)
T KOG0978|consen  552 QSLEMLKKKAQEAKQSLEDLQ  572 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.90  E-value=8.2  Score=42.70  Aligned_cols=24  Identities=46%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             hHhhHHHHHHHHHhhhhhHHHHHH
Q 004160          102 LESDLQAVLAALKKKEEDLEDAER  125 (771)
Q Consensus       102 l~s~~~~~l~~l~~ke~~l~~ae~  125 (771)
                      --.|+.|+..-|..||+||..|-+
T Consensus        60 ty~Didavt~lLeEkerDLelaA~   83 (306)
T PF04849_consen   60 TYNDIDAVTRLLEEKERDLELAAR   83 (306)
T ss_pred             chhhHHHHHHHHHHHhhhHHHHHH
Confidence            577999999999999999998865

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=93.90  E-value=5.6  Score=46.55  Aligned_cols=136  Identities=21%  Similarity=0.209  Sum_probs=98.6

Q ss_pred             HHHhhhHHHhHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhH
Q 004160          367 SYMTSLKDAQVEVESERVKLRVTEAR---NKELERDLS-MEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEF  442 (771)
Q Consensus       367 s~~~~l~~a~~e~~~~~~~l~~aqsE---~kELErqLl-qlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekEL  442 (771)
                      +.-.+|+.-..|+...|.+.-.++.+   +-+.+++++ .+.+++-....+......+++.++++...+++++..+...+
T Consensus       163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql  242 (596)
T KOG4360|consen  163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL  242 (596)
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566556666666665555544   345566666 78888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          443 GETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELK  502 (771)
Q Consensus       443 qElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELK  502 (771)
                      ..+++++.-..-+.+.+..-+..++..-..++.++.++.++..+.-..+.+...+++.|-
T Consensus       243 ~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  243 VDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            888888888888877777777777777777777777777777777777666666665553

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.85  E-value=11  Score=41.92  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=15.4

Q ss_pred             hChhhHHHHHHHHhhhhcccccc
Q 004160          652 EDANDLRKLYALAQERFGEKSVG  674 (771)
Q Consensus       652 ~d~~d~~~~~~~~~e~~~~~~~~  674 (771)
                      ...+|++-|...=-|+|-+|+|-
T Consensus       272 ~s~sdLksl~~aLle~indK~~a  294 (319)
T PF09789_consen  272 QSISDLKSLATALLETINDKNLA  294 (319)
T ss_pred             chHHHHHHHHHHHHHHhhhHHHH
Confidence            45677777777667777776553

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.78  E-value=1.2  Score=45.42  Aligned_cols=106  Identities=25%  Similarity=0.287  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160          394 KELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASL  473 (771)
Q Consensus       394 kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesL  473 (771)
                      ..+...++.+..++..+......+.+++..+...+..+...+......+..+...+..++..+..+...+.....-++.+
T Consensus        70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l  149 (194)
T PF08614_consen   70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL  149 (194)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444333333333333333333333333333333333333


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160          474 QLILEEKDFELSNARQMLEELNNEVR  499 (771)
Q Consensus       474 q~ELEEIdeELeeiqrrLeeLr~ELk  499 (771)
                      +-++..+.-+++....++..+..|..
T Consensus       150 ~DE~~~L~l~~~~~e~k~~~l~~En~  175 (194)
T PF08614_consen  150 QDELQALQLQLNMLEEKLRKLEEENR  175 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK11281 hypothetical protein; Provisional

Probab=93.53  E-value=30  Score=44.43  Aligned_cols=44  Identities=20%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          357 ELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDL  400 (771)
Q Consensus       357 el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqL  400 (771)
                      .|.+...-+-.|...|-.++..-++-.+.+..++.+..++.+++
T Consensus       136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L  179 (1113)
T PRK11281        136 QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL  179 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444666777777777766666666666666666666544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.51  E-value=18  Score=41.74  Aligned_cols=92  Identities=18%  Similarity=0.154  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160          323 LSDVRSELVSSQKSLASSRKQMEEQEHLLGKQL----VELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELER  398 (771)
Q Consensus       323 l~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~----~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELEr  398 (771)
                      ...+++=|..+=-++++|...+..+-.++++++    .++.+++...-.....|++...++.+=+.+|......+..+..
T Consensus        15 ~~~~~~~l~~~~~~~s~s~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~   94 (420)
T COG4942          15 TILLASLLSAAVLAAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK   94 (420)
T ss_pred             HHHHHHHHHhcccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            445566666665566666444443333332222    2333333333444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHH
Q 004160          399 DLSMEKELVEELQNEL  414 (771)
Q Consensus       399 qLlqlekeIeeLr~qL  414 (771)
                      +|..++..+..++.+.
T Consensus        95 ~I~~~~~~l~~l~~q~  110 (420)
T COG4942          95 QIADLNARLNALEVQE  110 (420)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            4444444444444444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.22  E-value=19  Score=44.34  Aligned_cols=224  Identities=21%  Similarity=0.217  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHH
Q 004160          252 VIQEKEEELEASVALRKVEEEKLKV---VEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRS  328 (771)
Q Consensus       252 ~~~~ke~~~~~~~~~~k~~~ekl~~---~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~  328 (771)
                      -++.+-+++.....-.--+.-.|..   --..++. ...|.....  .++............+..++|..++.--..+-.
T Consensus       534 dLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~-~f~~~ss~e--~E~~~~dea~~~~~~el~eelE~le~eK~~Le~  610 (769)
T PF05911_consen  534 DLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKK-NFDGDSSSE--AEINSEDEADTSEKKELEEELEKLESEKEELEM  610 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-hhhhccccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555554444444444544   2223333 366766653  333334466777788889999999999999999


Q ss_pred             HHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          329 ELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVE  408 (771)
Q Consensus       329 el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIe  408 (771)
                      +|.++++-+..++-++.+-+..|..-..+|+..+.|-.-|..-|+....-.++-.+++..++.++.       .+..+|.
T Consensus       611 ~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~-------~l~~Ki~  683 (769)
T PF05911_consen  611 ELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAE-------ELQSKIS  683 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHHH
Confidence            999999999999999999999888887787777766665555555544444444444444444444       4555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160          409 ELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNAR  488 (771)
Q Consensus       409 eLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiq  488 (771)
                      .|+.++.+.+..-..+...-..|+.++.....+...  ....   +.-..+     .-..+|...-..+.+.+.-|..+-
T Consensus       684 ~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~--~~~~---~~~~k~-----kqe~EiaaAA~KLAECQeTI~sLG  753 (769)
T PF05911_consen  684 SLEEELEKERALSEELEAKCRELEEELERMKKEESL--QQLA---NEDKKI-----KQEKEIAAAAEKLAECQETIASLG  753 (769)
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccch--hhcc---cccccc-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444444444444444432211100  0000   000001     112355555566666666666666


Q ss_pred             HHHHHHH
Q 004160          489 QMLEELN  495 (771)
Q Consensus       489 rrLeeLr  495 (771)
                      +.|.++.
T Consensus       754 kQLksLa  760 (769)
T PF05911_consen  754 KQLKSLA  760 (769)
T ss_pred             HHHHhcC
Confidence            6666554

The function of this family is unknown.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.21  E-value=31  Score=43.72  Aligned_cols=254  Identities=20%  Similarity=0.224  Sum_probs=151.3

Q ss_pred             HHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhh-----hhhHHHHHHhhhhHHHHHHHHHh
Q 004160          122 DAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQA-----RHIEDLKLRLKERDQEIAAMQSA  196 (771)
Q Consensus       122 ~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~-----~~i~~lk~~~~~~~~~~~~~~~~  196 (771)
                      -||..+.....+......++..-...+..| -+|..+-++..++.+.+++-.     +.|+.+...|.....+|.++...
T Consensus       171 kAE~~t~~~~~kkk~I~aEkk~aK~~k~ea-eky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~  249 (1141)
T KOG0018|consen  171 KAEETTTGNYKKKKSIAAEKKEAKEGKEEA-EKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKER  249 (1141)
T ss_pred             HHHHHHhhHhhhhhHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhh
Confidence            344444444444444444443333344444 456788888888888776643     67889999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHH------HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH---
Q 004160          197 LSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNE------ANEVVKKQETEIQSLRKVIQEKEEELEASVALR---  267 (771)
Q Consensus       197 ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~------an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~---  267 (771)
                      +..+..++...|.+.-+-..+...++..|..|+..|.+      +-+-+..--+.+.+.+..|.-.+.+......--   
T Consensus       250 ~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~  329 (1141)
T KOG0018|consen  250 MDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERL  329 (1141)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHH
Confidence            99999999999999989999999999999999888776      111111112334444444444443333222111   


Q ss_pred             ----HHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhH
Q 004160          268 ----KVEEEKLKVVEANLEKRTMEWL-------LSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKS  336 (771)
Q Consensus       268 ----k~~~ekl~~~e~~le~~~~~wl-------~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~  336 (771)
                          +.=.-+-.--+.+.+...-.|+       ..-+|-..|.+.|++...+=-.++.   |       .+..--.+-+.
T Consensus       330 ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln---~-------~~r~~~~~ld~  399 (1141)
T KOG0018|consen  330 EKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLN---R-------NMRSDQDTLDH  399 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHH---H-------HHHHHHHHHhh
Confidence                1111122223344444444465       3345666777777776511111111   1       11111112222


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHH
Q 004160          337 LASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKL  386 (771)
Q Consensus       337 ~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l  386 (771)
                      .-.-+...|+--..+..++.++..+|.-++-+.+++...-.|+.....+|
T Consensus       400 ~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l  449 (1141)
T KOG0018|consen  400 ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSL  449 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Confidence            23345556666677777888888888888888888877777766554443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.13  E-value=20  Score=41.10  Aligned_cols=80  Identities=10%  Similarity=0.129  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160          383 RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE  462 (771)
Q Consensus       383 ~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e  462 (771)
                      +++-...+.+...+.+.+.....++..+..+-+++.+++-++..+...+..+.+.+..+-.+++.....+..+.-+|..+
T Consensus       115 r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r  194 (499)
T COG4372         115 RQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR  194 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333445555555555666666666666666666666666666655555555555444444444444444444444333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=93.02  E-value=17  Score=40.20  Aligned_cols=96  Identities=24%  Similarity=0.305  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHH
Q 004160          377 VEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDL  456 (771)
Q Consensus       377 ~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnEL  456 (771)
                      ..|+-.+.+|..++.++...+..+...+.++..++..+..++..++....+...++.+.......+.-....+.-+.++.
T Consensus       214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~  293 (344)
T PF12777_consen  214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK  293 (344)
T ss_dssp             CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence            34455555555555555555555555555555555555555555555555555555555554455555555555555555


Q ss_pred             HHHHHHHHHHHHHHHH
Q 004160          457 VEAKLEIQNLKSKQAS  472 (771)
Q Consensus       457 eeLq~eiEqLKsEIes  472 (771)
                      ......+..+......
T Consensus       294 ~RW~~~~~~l~~~~~~  309 (344)
T PF12777_consen  294 ERWSEQIEELEEQLKN  309 (344)
T ss_dssp             HCCHCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcc
Confidence            5554444444444433

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.00  E-value=17  Score=40.08  Aligned_cols=72  Identities=18%  Similarity=0.216  Sum_probs=35.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160          472 SLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLV----QAMDTLQEKDEHVLILQNELDGTKLKVSEA  543 (771)
Q Consensus       472 sLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLe----EleeeLkEkEE~L~~~q~ELNe~nIe~sQq  543 (771)
                      .++.-|.+|...+..-...-..+..+-..|...+..+-++.+    .+...++.++-.++-....|...+....+.
T Consensus       111 kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e  186 (309)
T PF09728_consen  111 KFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQE  186 (309)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444555555554444444444444444444444443333    455555555555555555555544444333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.99  E-value=1.9  Score=47.45  Aligned_cols=45  Identities=24%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             ChhhHHHHHHHHhhhhcccccchhHHHHHhHHHhhHHHHHhHHHHHHHHHHHHHH
Q 004160          653 DANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGEL  707 (771)
Q Consensus       653 d~~d~~~~~~~~~e~~~~~~~~~~~~~~l~~eaa~~e~~aat~~l~kl~~~s~~~  707 (771)
                      ||..++-||.....+||..|+.        +--.  .-+.=|.|++.|.---+-+
T Consensus       260 ~~~~~~lPy~i~~~~I~~~si~--------~~~~--~~~~WT~AlK~lLtnlKw~  304 (314)
T PF04111_consen  260 DPQSFELPYKIDKDKIGGVSIK--------LQFN--SEEEWTKALKYLLTNLKWL  304 (314)
T ss_dssp             HH-----SS-ECTTEECTCES---------STTS---HHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccceeccCCccCCeeee--------ecCC--ChhHHHHHHHHHHHHHHHH
Confidence            4447778888887777777653        0001  2235677877765443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.76  E-value=4.4  Score=42.97  Aligned_cols=96  Identities=21%  Similarity=0.265  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160          386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQN  465 (771)
Q Consensus       386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEq  465 (771)
                      +|..-.++..+...+.+....+..-..-|....++.+.+..+....-++|.+++..+..++..|...+.+....+..+..
T Consensus         6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r   85 (230)
T PF10146_consen    6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR   85 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555555555555555555555555666666665555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHhHH
Q 004160          466 LKSKQASLQLILEEKD  481 (771)
Q Consensus       466 LKsEIesLq~ELEEId  481 (771)
                      +..++..+...+++++
T Consensus        86 ~~eey~~Lk~~in~~R  101 (230)
T PF10146_consen   86 LYEEYKPLKDEINELR  101 (230)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555554444444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.54  E-value=15  Score=38.41  Aligned_cols=85  Identities=22%  Similarity=0.346  Sum_probs=37.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          451 VKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ  530 (771)
Q Consensus       451 elEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q  530 (771)
                      ....+...++.++..++..+.....+++..+.++...+..+......+............+..+....+......+..+.
T Consensus        60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  139 (302)
T PF10186_consen   60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ  139 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444443333334444444455555555555554444444


Q ss_pred             Hhhhh
Q 004160          531 NELDG  535 (771)
Q Consensus       531 ~ELNe  535 (771)
                      ..+..
T Consensus       140 ~~l~~  144 (302)
T PF10186_consen  140 SQLAR  144 (302)
T ss_pred             HHHHH
Confidence            44333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.41  E-value=28  Score=42.18  Aligned_cols=23  Identities=17%  Similarity=0.263  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHh
Q 004160          321 KLLSDVRSELVSSQKSLASSRKQ  343 (771)
Q Consensus       321 ~ll~~vr~el~~s~~~~~~sr~~  343 (771)
                      .=|..+|.+|..+..+++.+|.+
T Consensus       201 ~ql~~l~~~l~~aE~~l~~fk~~  223 (754)
T TIGR01005       201 PEIADLSKQSRDAEAEVAAYRAQ  223 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667788888888888888764

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.34  E-value=6.9  Score=45.19  Aligned_cols=72  Identities=24%  Similarity=0.292  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160          357 ELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELG  436 (771)
Q Consensus       357 el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELq  436 (771)
                      -|+.||+...+||..+..||+  ++-+..+..+-.+..+++.....       ++...+..+..+.+++..+..+.+++.
T Consensus       329 qleSqr~y~e~~~~e~~qsql--en~k~~~e~~~~e~~~l~~~~~~-------~e~~kk~~e~k~~q~q~k~~k~~kel~  399 (493)
T KOG0804|consen  329 QLESQRKYYEQIMSEYEQSQL--ENQKQYYELLITEADSLKQESSD-------LEAEKKIVERKLQQLQTKLKKCQKELK  399 (493)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHhhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788888888877777443  33344444444444444443333       333333444444444444444555444


Q ss_pred             H
Q 004160          437 R  437 (771)
Q Consensus       437 e  437 (771)
                      .
T Consensus       400 ~  400 (493)
T KOG0804|consen  400 E  400 (493)
T ss_pred             H
Confidence            3

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=92.32  E-value=16  Score=38.22  Aligned_cols=37  Identities=19%  Similarity=0.434  Sum_probs=17.0

Q ss_pred             HHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Q 004160          307 EETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQ  347 (771)
Q Consensus       307 ~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q  347 (771)
                      ...+.++.++..--++|++..    .++.....+++.|..-
T Consensus        14 ~~~~~~i~~l~~al~~L~~~~----~~~~~~~~~~~~i~~a   50 (240)
T PF12795_consen   14 PEQKALIQDLQQALSFLDEIK----KQKKRAAEYQKQIDQA   50 (240)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence            444455555555555554432    2334444444444433

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=92.13  E-value=45  Score=42.88  Aligned_cols=83  Identities=14%  Similarity=0.221  Sum_probs=44.3

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHH-----HHHHHhHHHHHHH
Q 004160          276 VVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSL-----ASSRKQMEEQEHL  350 (771)
Q Consensus       276 ~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~-----~~sr~~~e~q~~~  350 (771)
                      .+-++| .+++.||..-++.+.-++...+.+++.-..+.          .++.+|-.-+...     ..|-.+.|.+-.+
T Consensus        45 ~~~~~l-~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~----------~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~  113 (1109)
T PRK10929         45 EIVEAL-QSALNWLEERKGSLERAKQYQQVIDNFPKLSA----------ELRQQLNNERDEPRSVPPNMSTDALEQEILQ  113 (1109)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHhhhcccccccccCCHHHHHHHHHH
Confidence            344455 67889998777766655555544444333322          2222222111111     1124667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004160          351 LGKQLVELEEQKKSLTSYM  369 (771)
Q Consensus       351 l~~q~~el~~q~~~~~s~~  369 (771)
                      ...+++++.++-....+..
T Consensus       114 ~~~~L~~~q~~l~~~~~~~  132 (1109)
T PRK10929        114 VSSQLLEKSRQAQQEQDRA  132 (1109)
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            7777777777666555554

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=92.09  E-value=48  Score=43.07  Aligned_cols=123  Identities=18%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             hhhhhhhhccCCCCCCcccccCc--hHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHH-HhHHHHHHH
Q 004160           75 QTQKLEERMSRDSGVGKDVQFGL--NLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELL-RREREIDVA  151 (771)
Q Consensus        75 ~t~~l~~~~~~~~~l~~~~~~~~--~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~-~re~~i~~a  151 (771)
                      .+++....++++.+.-.+..+.+  +++.+--++.--+..+.++++.++--+..+-.-.+..+   .++. ..+.++   
T Consensus       546 ~~~k~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~---~~~e~~~~e~~---  619 (1294)
T KOG0962|consen  546 ELRKIKSRLSDEKGRAIEFPLTNDRSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIR---KDLEDRKEEEL---  619 (1294)
T ss_pred             HHHHHHHhcchhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHH---
Confidence            45555555666555554544555  45555554544444444444444332222222211111   1111 111111   


Q ss_pred             HHhhHHHHHHHhhhhHHHHHhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHH
Q 004160          152 CSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKM  207 (771)
Q Consensus       152 ~~~~~~~e~~l~~~~~~l~~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~  207 (771)
                          ...+..++.-+...++--..|+.|+...++.-+..++++.....=.-=++.+
T Consensus       620 ----k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~  671 (1294)
T KOG0962|consen  620 ----KSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIA  671 (1294)
T ss_pred             ----HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence                1123334444444455556667777777777777777775544433333333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=91.97  E-value=36  Score=41.44  Aligned_cols=467  Identities=19%  Similarity=0.237  Sum_probs=204.8

Q ss_pred             HHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 004160          205 EKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKR  284 (771)
Q Consensus       205 ~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~  284 (771)
                      ++++.++--|-++++.+-.-+..|+.-+..-.=-+..----+..|+-..+.--+-|-.|+.-+..-...|-.+-..|.+-
T Consensus       229 eey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~  308 (786)
T PF05483_consen  229 EEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQES  308 (786)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Confidence            33444444444455544444444444333322222222222333333333333334444444444444444444444332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160          285 TMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKS  364 (771)
Q Consensus       285 ~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~  364 (771)
                      ....-.-+.+|.-.......-.++--..|+||.+++-.-..|-.++-.+=-+|.++=..       =+..+..+++|=+.
T Consensus       309 ~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~-------Eqqr~~~~ed~lk~  381 (786)
T PF05483_consen  309 ESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTT-------EQQRLKKNEDQLKI  381 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHH
Confidence            22222222333333333344444555678899999888877777776655555443211       12233445554433


Q ss_pred             HHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 004160          365 LTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE  444 (771)
Q Consensus       365 ~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqE  444 (771)
                      ++-   .|..--.+++.-+..     ..+++++  +-.+...++.... +-..+..++.+...+..-.+++..   -+..
T Consensus       382 l~~---eLqkks~eleEmtk~-----k~~ke~e--leeL~~~L~e~qk-ll~ekk~~eki~E~lq~~eqel~~---llq~  447 (786)
T PF05483_consen  382 LTM---ELQKKSSELEEMTKQ-----KNNKEVE--LEELKKILAEKQK-LLDEKKQFEKIAEELQGTEQELTG---LLQI  447 (786)
T ss_pred             HHH---HHHHhhHHHHHHHHH-----hhhhHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence            332   222111222211111     1112221  2222333333332 222223344444443333333322   3556


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----
Q 004160          445 TENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQ----  520 (771)
Q Consensus       445 lekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLk----  520 (771)
                      .++.+..++..+.........+...+..+..+++.-..+-.++......+..+...+......+--.+..+.+.+.    
T Consensus       448 ~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~  527 (786)
T PF05483_consen  448 REKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKK  527 (786)
T ss_pred             hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6666666777777776666666666666666666544444444444444444444443333332222222222111    


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHH
Q 004160          521 EKDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLE  599 (771)
Q Consensus       521 EkEE~L~~~q~ELNe~nIe~sQq-Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLE  599 (771)
                      ..+..+.++.. |..++..+.+- +++...+..--.++..-....+.+..    .+.-..  ...++..--++..++-+.
T Consensus       528 qee~~~kqie~-Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r----~~e~e~--~~k~kq~k~lenk~~~Lr  600 (786)
T PF05483_consen  528 QEEKMLKQIEN-LEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENAR----SIECEI--LKKEKQMKILENKCNNLR  600 (786)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH----HHHHHH--hhhHHHHHHHHHHHHHHH
Confidence            11111111111 22233222222 34444443333333321100000000    011111  222233344556666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH----Hhhh-hChhhHHHHHHHHhhhhcccccc
Q 004160          600 IELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL----EETV-EDANDLRKLYALAQERFGEKSVG  674 (771)
Q Consensus       600 qEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~----~~~~-~d~~d~~~~~~~~~e~~~~~~~~  674 (771)
                      ..++.....+.++..+-..+++..++-+--+...=.+....+.|+..+    +|.+ .=-.|+-.=..++.+-.|     
T Consensus       601 KqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~-----  675 (786)
T PF05483_consen  601 KQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLG-----  675 (786)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH-----
Confidence            777777777777777777788888777776666666666666666554    2222 111122111222211112     


Q ss_pred             hhHHHHHhHHHhhH---HHHHhHHHHHHHHHHHHH
Q 004160          675 DLAIERLQLEAAQL---EVEAATSALQKLTEMSGE  706 (771)
Q Consensus       675 ~~~~~~l~~eaa~~---e~~aat~~l~kl~~~s~~  706 (771)
                        +++|+..-|++.   --+.-.-.=+|+|+|.+=
T Consensus       676 --EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVAL  708 (786)
T PF05483_consen  676 --EVEKAKLTADEAVKLQEETDLRCQHKIAEMVAL  708 (786)
T ss_pred             --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence              477777665543   223334456899999863

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=91.42  E-value=26  Score=38.67  Aligned_cols=145  Identities=13%  Similarity=0.124  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004160          461 LEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKM-------IMSSREEQLVQAMDTLQEKDEHVLILQNEL  533 (771)
Q Consensus       461 ~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKs-------lIesLEgqLeEleeeLkEkEE~L~~~q~EL  533 (771)
                      .+..++...+.....+++-...+|.........-......++.       .+..+...-.++...+.-..+.|+..++-|
T Consensus       153 ~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL  232 (309)
T PF09728_consen  153 LREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTL  232 (309)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555566666666666666666666666666666666       555555555566666666666666656665


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 004160          534 DGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLR  610 (771)
Q Consensus       534 Ne~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~~qeLekereeLeeel~eLEqEleelReeLr  610 (771)
                      +.-|--|.   ++...|.+.+..+..+.    .+...|...-   ...|  ..+       -.+......++..+...+.
T Consensus       233 ~kSNe~F~---tfk~Emekm~Kk~kklE----KE~~~~k~k~e~~n~~l--~~m-------~eer~~~~~~~~~~~~k~~  296 (309)
T PF09728_consen  233 NKSNEVFE---TFKKEMEKMSKKIKKLE----KENQTWKSKWEKSNKAL--IEM-------AEERQKLEKELEKLKKKIE  296 (309)
T ss_pred             HHhHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHH--HHH-------HHHHHHHHHHHHHHHHHHH
Confidence            55555554   55666777777777666    6666666544   4455  333       3445556666666666666


Q ss_pred             HHHHHHHHHHH
Q 004160          611 MKEMEVLAAKR  621 (771)
Q Consensus       611 EkE~eLrelrR  621 (771)
                      .++.=.++++.
T Consensus       297 kLe~LcRaLQ~  307 (309)
T PF09728_consen  297 KLEKLCRALQA  307 (309)
T ss_pred             HHHHHHHHHhh
Confidence            66666665554

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR00634 recN DNA repair protein RecN

Probab=91.32  E-value=36  Score=40.11  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004160          594 QTKQLEIELKFARENLRMKEMEVLAAKRALT  624 (771)
Q Consensus       594 el~eLEqEleelReeLrEkE~eLrelrRaL~  624 (771)
                      .+..++.++...+..+..+-..|...|+..+
T Consensus       347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a  377 (563)
T TIGR00634       347 SLEALEEEVDKLEEELDKAAVALSLIRRKAA  377 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555556666666665554443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=91.29  E-value=7.9  Score=43.58  Aligned_cols=65  Identities=20%  Similarity=0.258  Sum_probs=40.2

Q ss_pred             HHHHHhhhHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          365 LTSYMTSLKDAQVEVESERVKLRV-TEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVS  429 (771)
Q Consensus       365 ~~s~~~~l~~a~~e~~~~~~~l~~-aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIe  429 (771)
                      ++.-..+-.+=++||++=.-+|+. ++...+.+..-+-+...-...+...+...+..|..+..++.
T Consensus       186 i~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~  251 (359)
T PF10498_consen  186 IIESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDIS  251 (359)
T ss_pred             cccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            333445566667888888888863 35556677766666666666666655555555555554433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=91.21  E-value=33  Score=39.41  Aligned_cols=146  Identities=14%  Similarity=0.164  Sum_probs=68.3

Q ss_pred             HhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhhhHHHH
Q 004160          369 MTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE---LGRKNTEFGET  445 (771)
Q Consensus       369 ~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE---LqelekELqEl  445 (771)
                      .+|+.-|+-+.-.-..+-+..+.+++.|-.++-+++.+.-.+.++...+.-.-.++..+.-.|..+   +.+-...+..-
T Consensus       129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r  208 (499)
T COG4372         129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR  208 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666777777777777666666666655555554433443333333322   22222333333


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004160          446 ENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQ  514 (771)
Q Consensus       446 ekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeE  514 (771)
                      ...++....++.......++....|......|...+.++..-...+.+-...+..++.....++....+
T Consensus       209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~  277 (499)
T COG4372         209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ  277 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444333333333333333333333333333333333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.15  E-value=52  Score=41.65  Aligned_cols=62  Identities=23%  Similarity=0.264  Sum_probs=48.1

Q ss_pred             hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhh
Q 004160          576 GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDA  639 (771)
Q Consensus       576 eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~  639 (771)
                      ...+  ..|.+..+..+..+....+++...+..++..+.++....+.....-.|++++=+....
T Consensus       677 ~~~~--~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~  738 (1200)
T KOG0964|consen  677 RSEL--KELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSR  738 (1200)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            5566  6777777788888888888888899999999998888888877777777766554433

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.98  E-value=15  Score=35.61  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160          492 EELNNEVRELKMIMSSREEQLVQAMDTLQEKD  523 (771)
Q Consensus       492 eeLr~ELkELKslIesLEgqLeEleeeLkEkE  523 (771)
                      .+++..+..+=.++....+..+++...+.+..
T Consensus        78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK  109 (120)
T PF12325_consen   78 EELQQRYQTLLELLGEKSEEVEELRADVQDLK  109 (120)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=90.85  E-value=0.13  Score=61.53  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 004160          526 VLILQNELDGTKLKVSEAETVVEQIVDLTHKLVI  559 (771)
Q Consensus       526 L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~  559 (771)
                      +.-+...+..++-++.....+..++..+..+-..
T Consensus       310 ~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~  343 (713)
T PF05622_consen  310 ADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAV  343 (713)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444554544445555555444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=90.60  E-value=53  Score=40.82  Aligned_cols=337  Identities=19%  Similarity=0.246  Sum_probs=178.5

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhHH
Q 004160          190 IAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEE-ELEASVALRK  268 (771)
Q Consensus       190 ~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~-~~~~~~~~~k  268 (771)
                      ..-...+||-|-.+|-..-.++-+|+.+..-+++++.   ++|.+||+--++-+--++.++.....+-. -++++.    
T Consensus       150 lh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~---tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~----  222 (1265)
T KOG0976|consen  150 LHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQ---TKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHK----  222 (1265)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH----
Confidence            3344566777777777777777777887777777775   45677777766666666666665544322 122221    


Q ss_pred             HHHHHHHHHH--HHHh--hhHHHHHHHH-HHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHH-----------HHHhh
Q 004160          269 VEEEKLKVVE--ANLE--KRTMEWLLSQ-DALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVR-----------SELVS  332 (771)
Q Consensus       269 ~~~ekl~~~e--~~le--~~~~~wl~~q-~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr-----------~el~~  332 (771)
                      ...---+|.+  -.|.  +|+|.-+-.- -=+++.-.+.--..+++-++|.+++--++.|.+=-           .||--
T Consensus       223 ~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~  302 (1265)
T KOG0976|consen  223 DQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDT  302 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            1111111111  1111  1222111100 01122222222334556666666666666555432           33333


Q ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          333 SQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN  412 (771)
Q Consensus       333 s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~  412 (771)
                      -++.-+.+=..+++-..-+.--.-++.-|+.-+   -..|..|+.-++|=-.+++       +|+.+.-.+.-.+-.++.
T Consensus       303 lkqt~t~a~gdseqatkylh~enmkltrqkadi---rc~LlEarrk~egfddk~~-------eLEKkrd~al~dvr~i~e  372 (1265)
T KOG0976|consen  303 LKQTRTRADGDSEQATKYLHLENMKLTRQKADI---RCALLEARRKAEGFDDKLN-------ELEKKRDMALMDVRSIQE  372 (1265)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcchhHHHH-------HHHHHHHHHHHhHHHHHH
Confidence            344444433344444444444444555554433   2445555555555444444       455555555666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004160          413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENL---LRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQ  489 (771)
Q Consensus       413 qLqkekqeLEelqeEIesLQeELqelekELqEleke---IeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqr  489 (771)
                      .+.+.+..++.+......+++++..+++-+.-+...   .+...+++.....+...|...+.-+...+..+..=.+...-
T Consensus       373 ~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aeg  452 (1265)
T KOG0976|consen  373 KKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEG  452 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhh
Confidence            666667777777777777777777766666555443   45556666666666677777766666666654433332221


Q ss_pred             H----HHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160          490 M----LEELNNEVRELKMIMSS------REEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA  543 (771)
Q Consensus       490 r----LeeLr~ELkELKslIes------LEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq  543 (771)
                      .    |+.-..-+.-+..++++      .+.+++.+..+.......+..+..++.++++.+.+.
T Consensus       453 srrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~e  516 (1265)
T KOG0976|consen  453 SRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSE  516 (1265)
T ss_pred             hHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    11111222233333333      234556666666667777777888888877777665

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.60  E-value=23  Score=36.69  Aligned_cols=53  Identities=21%  Similarity=0.251  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Q 004160          401 SMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKE  453 (771)
Q Consensus       401 lqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelE  453 (771)
                      ..+..+|..++.....++..+..+..+-..|..-+.....+..++.+.+....
T Consensus        30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~   82 (201)
T PF13851_consen   30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE   82 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.60  E-value=5.8  Score=43.66  Aligned_cols=17  Identities=12%  Similarity=0.044  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHhhh
Q 004160          544 ETVVEQIVDLTHKLVIS  560 (771)
Q Consensus       544 Etl~eRIeeLt~eLe~s  560 (771)
                      .++..++....++|..+
T Consensus       116 ~sl~~q~~~~~~~L~~L  132 (314)
T PF04111_consen  116 DSLKNQYEYASNQLDRL  132 (314)
T ss_dssp             HHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45555555555555553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.53  E-value=33  Score=38.33  Aligned_cols=33  Identities=12%  Similarity=0.209  Sum_probs=25.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          589 DNFRLQTKQLEIELKFARENLRMKEMEVLAAKR  621 (771)
Q Consensus       589 eeLeeel~eLEqEleelReeLrEkE~eLrelrR  621 (771)
                      --+.+.++.++.+...++..|.-+..-+...++
T Consensus       199 RyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~  231 (319)
T PF09789_consen  199 RYLKERLKQLQEEKELLKQTINKYKSALERKRK  231 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            346778888888888888888888887766444

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=90.36  E-value=33  Score=38.04  Aligned_cols=124  Identities=10%  Similarity=0.113  Sum_probs=79.8

Q ss_pred             HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q 004160          438 KNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVR-----------ELKMIMS  506 (771)
Q Consensus       438 lekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELk-----------ELKslIe  506 (771)
                      +.+.+.++...++.+..+-.-|..+++.=+..-+.++.+++++...|+.+....+.-..-..           +--...+
T Consensus        54 ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqd  133 (305)
T PF14915_consen   54 LTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQD  133 (305)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHH
Confidence            34566677777777777777777777777777777777777777777766655443222111           1122222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-----------HHHHHHHHHHHHHHhhhc
Q 004160          507 SREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-----------ETVVEQIVDLTHKLVISN  561 (771)
Q Consensus       507 sLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-----------Etl~eRIeeLt~eLe~s~  561 (771)
                      .+-..+..+...-.-+.++|..+...+|.+.+++|..           +++++.+.+-..++..+.
T Consensus       134 kmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e  199 (305)
T PF14915_consen  134 KMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIE  199 (305)
T ss_pred             HhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566666667778888999999999999999988           455555555555544433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=89.93  E-value=18  Score=41.90  Aligned_cols=50  Identities=24%  Similarity=0.249  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160          413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE  462 (771)
Q Consensus       413 qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e  462 (771)
                      ++.+.++-++.+..+...++.+......+..-++..+..++..+..++.+
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ke  397 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKE  397 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666655555444444444444444444444333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.77  E-value=17  Score=44.55  Aligned_cols=63  Identities=17%  Similarity=0.194  Sum_probs=28.4

Q ss_pred             HHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          368 YMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQE  433 (771)
Q Consensus       368 ~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQe  433 (771)
                      |+..+..|+.+++....-|....+   ..-..+..+.+++..++..-.++..+++...+....|.+
T Consensus       552 Yi~~~~~ar~ei~~rv~~Lk~~~e---~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~  614 (717)
T PF10168_consen  552 YIEKQDLAREEIQRRVKLLKQQKE---QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK  614 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566666666554333332222   223333444444444444444444444444444333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.62  E-value=53  Score=39.31  Aligned_cols=29  Identities=10%  Similarity=0.148  Sum_probs=23.1

Q ss_pred             hhhhhhhhhhHhhhhHHHHHHHHcCcccc
Q 004160          740 ECLTEVGSEVARLSVLTEQLVKEAGIVDG  768 (771)
Q Consensus       740 ~~~~~~~~~v~~l~~lt~ql~~~ag~~~~  768 (771)
                      +-|.+.++.|-+.-.|.+|=+..+-+.++
T Consensus       567 ~qik~lq~av~~~~~~~~q~~~s~e~~~~  595 (772)
T KOG0999|consen  567 DQIKHLQKAVDHTKELSRQRIASQELGPA  595 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            67888899999999999988877655554

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=89.60  E-value=48  Score=38.75  Aligned_cols=155  Identities=14%  Similarity=0.114  Sum_probs=96.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHh
Q 004160          375 AQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKES  454 (771)
Q Consensus       375 a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEn  454 (771)
                      -+-|++.=|+.+--.+++...++-+++.++.+|.+++.++-.+.+.          .+.++..+..++.....-+..++.
T Consensus       307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~----------~~~q~~~~h~~ka~~~~~~~~l~~  376 (554)
T KOG4677|consen  307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESA----------GQTQIFRKHPRKASILNMPLVLTL  376 (554)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------hHHHHHHhhhHhhhhhhchHHHHH
Confidence            3567777777777778888888888888888888888888777665          334444444445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          455 DLVEAKLEIQNLKSKQASLQLI----LEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ  530 (771)
Q Consensus       455 ELeeLq~eiEqLKsEIesLq~E----LEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q  530 (771)
                      .++-+..+-+-...+.......    |-+.+.+|..+..++.     ........+.+.+-..+++.-+.++-.+|....
T Consensus       377 ~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~-----~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~  451 (554)
T KOG4677|consen  377 FYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLK-----LRAWNDSVDALFTTKNQLTYTLKQKQIGLERVV  451 (554)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHH-----HHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence            5555554444334333333222    2233333333333332     123444566777788888888888888888888


Q ss_pred             HhhhhhhhhHHHHH
Q 004160          531 NELDGTKLKVSEAE  544 (771)
Q Consensus       531 ~ELNe~nIe~sQqE  544 (771)
                      ..++.+|+.+-+++
T Consensus       452 ~~~~~ln~~lerLq  465 (554)
T KOG4677|consen  452 EILHKLNAPLERLQ  465 (554)
T ss_pred             HHHhhhhhhHHHHH
Confidence            88888887765553

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.49  E-value=14  Score=39.04  Aligned_cols=71  Identities=15%  Similarity=0.131  Sum_probs=35.4

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004160          440 TEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLV  513 (771)
Q Consensus       440 kELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLe  513 (771)
                      .+...+...+..+..++..+.....+++..+.+.+.++.++..++..+.....++.+   .+...++.++.|+.
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p---~m~~m~~~L~~~v~  119 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP---LMEQMIDELEQFVE  119 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            333334444444444444444455555555555555555555555555555555544   44445555555444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=89.34  E-value=18  Score=40.84  Aligned_cols=17  Identities=6%  Similarity=0.253  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHhhhc
Q 004160          545 TVVEQIVDLTHKLVISN  561 (771)
Q Consensus       545 tl~eRIeeLt~eLe~s~  561 (771)
                      .+++-|.+++.++..+.
T Consensus       332 ~IKqAl~kLk~EI~qMd  348 (359)
T PF10498_consen  332 KIKQALTKLKQEIKQMD  348 (359)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            44444555555555444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=89.33  E-value=25  Score=35.17  Aligned_cols=82  Identities=18%  Similarity=0.211  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          423 QAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELK  502 (771)
Q Consensus       423 elqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELK  502 (771)
                      .+...|+....++..+...+...-..+......+..+......++.++......+..++.++.......+.+......+.
T Consensus        53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~  132 (177)
T PF13870_consen   53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR  132 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444445555555555555555555555555555555555555544444444444


Q ss_pred             HH
Q 004160          503 MI  504 (771)
Q Consensus       503 sl  504 (771)
                      ..
T Consensus       133 ~~  134 (177)
T PF13870_consen  133 QQ  134 (177)
T ss_pred             Hh
Confidence            33

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=88.82  E-value=27  Score=34.92  Aligned_cols=121  Identities=17%  Similarity=0.173  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160          388 VTEARNKELERDLSMEKELVEELQNELNKEK-YSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNL  466 (771)
Q Consensus       388 ~aqsE~kELErqLlqlekeIeeLr~qLqkek-qeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqL  466 (771)
                      ..+-.+..+..++..++..+...+.-=+.+- -.++++..+...+...+.+.+.++..+...+...-..+...+.+...+
T Consensus        10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~   89 (177)
T PF13870_consen   10 KLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFL   89 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444433333333333222222 234444444444445555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160          467 KSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSR  508 (771)
Q Consensus       467 KsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesL  508 (771)
                      ..+...+...+......+...+..+..+..+...+......+
T Consensus        90 ~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l  131 (177)
T PF13870_consen   90 SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL  131 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555444444444444444444444444443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.79  E-value=18  Score=38.55  Aligned_cols=57  Identities=19%  Similarity=0.189  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160          413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK  469 (771)
Q Consensus       413 qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE  469 (771)
                      .++.+..-|+++.+++..|..|......+++.+...|+.++.....+....+.....
T Consensus        26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~   82 (230)
T PF10146_consen   26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK   82 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555544444445555544444444444444433333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=88.44  E-value=71  Score=39.21  Aligned_cols=405  Identities=17%  Similarity=0.206  Sum_probs=196.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHhhHHhhhHHHhHHHH
Q 004160          241 KQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEA-SRRMEETNDTLEDFRRV  319 (771)
Q Consensus       241 ~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a-~k~~~~~~~~~~df~rv  319 (771)
                      .|.+-|+-||--+++       +..+.+-+.++++.-+.++.+ .-.-|.+.+|..++-.++ +|+..+..--=+++.+.
T Consensus       471 ~qs~iIkKLRAk~ke-------~etl~~K~ge~i~~L~sE~~~-lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~s  542 (961)
T KOG4673|consen  471 AQSAIIKKLRAKIKE-------AETLEEKKGELITKLQSEENK-LKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNS  542 (961)
T ss_pred             HHHHHHHHHHHHhhh-------hhHHHHHhhhHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            355666666665544       344455555666665555543 234577888888877665 56666666667788999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHH----HHHHHHHHHHH
Q 004160          320 KKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERV----KLRVTEARNKE  395 (771)
Q Consensus       320 ~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~----~l~~aqsE~kE  395 (771)
                      +.+.++..+-+.+-|.+|-+.|+-..- +--|+  ..++..+-.-   |.+-+.|-+.-......    +=..++.++..
T Consensus       543 r~~~~~le~~~~a~qat~d~a~~Dlqk-~nrlk--Qdear~~~~~---lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~  616 (961)
T KOG4673|consen  543 RALAAALEAQALAEQATNDEARSDLQK-ENRLK--QDEARERESM---LVQQVEDLRQTLSKKEQQAARREDMFRGEIED  616 (961)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHHH-Hhhhh--hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999983311 11111  1122222111   22222222211111111    11234455555


Q ss_pred             HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH--HHHHh-----HHH
Q 004160          396 LERDLSMEKELVEELQNE-----------LNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL--RVKES-----DLV  457 (771)
Q Consensus       396 LErqLlqlekeIeeLr~q-----------LqkekqeLEelqeEIesLQeELqelekELqElekeI--eelEn-----ELe  457 (771)
                      |++.+-..+..-..+-.+           |..++..+-..   -..+..+-+.+...+.+.+..+  +....     ++-
T Consensus       617 LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~---~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL  693 (961)
T KOG4673|consen  617 LQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKA---ATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELL  693 (961)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHH
Confidence            555555544444333222           12222111111   1111221122222222211111  11111     111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004160          458 EAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTK  537 (771)
Q Consensus       458 eLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~n  537 (771)
                      .+.-.+-.......-+..+-..+...+.....+....+.++..++..++.++|....+.....+.....   +.++....
T Consensus       694 ~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~---~q~lq~~l  770 (961)
T KOG4673|consen  694 SLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH---KQELQEVL  770 (961)
T ss_pred             HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHH
Confidence            111111122233344445555667777777888888888888888888888888887777766554333   23333333


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhc-------c------CcccCcCC----cch------------HH---hhHhhhhhhh
Q 004160          538 LKVSEAETVVEQIVDLTHKLVISN-------K------NDESSTSM----PTD------------DM---GLELMQQGLD  585 (771)
Q Consensus       538 Ie~sQqEtl~eRIeeLt~eLe~s~-------~------~~~~dI~q----lkd------------EI---eeeL~~qeLe  585 (771)
                      +.+....--..+-....-+++.+.       .      .-..+|.-    |.+            .+   .--|  -.+-
T Consensus       771 l~ve~~~k~~e~~~~~~~~lers~a~i~Ssp~~s~~~SgSnee~ag~~~~f~~dd~s~~~s~gqq~~~~~~~hl--~~~~  848 (961)
T KOG4673|consen  771 LHVELIQKDLEREKASRLDLERSTARINSSPVSSQLPSGSNEEIAGQNSAFENDDFSEKRSMGQQEATMSPYHL--KSIT  848 (961)
T ss_pred             HHHHHHHHHhhhCHHHHhhcccccCccCCCCchhhCCCCchHhHhcccchhhccchhhhhcCCCCCcccchhHH--hhhc
Confidence            333222000000001111111100       0      00011100    000            00   1111  1111


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhHHHHHHHHh
Q 004160          586 KGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQ  665 (771)
Q Consensus       586 kereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~~~~~~~~~  665 (771)
                      .+...+++--+.+    .--.++|..+-.+|..+.....+.++||--.-.-.+..+...+.+..+-.--.|++-=|+.+-
T Consensus       849 ~nttt~eh~eall----~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~L  924 (961)
T KOG4673|consen  849 PNTTTSEHYEALL----RQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAAL  924 (961)
T ss_pred             CCCchHHHHHHHH----HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            1222232222222    225567788888888888888889998866555555555555555555555567777788887


Q ss_pred             hhhccc
Q 004160          666 ERFGEK  671 (771)
Q Consensus       666 e~~~~~  671 (771)
                      .-.||+
T Consensus       925 qmyGEk  930 (961)
T KOG4673|consen  925 QMYGEK  930 (961)
T ss_pred             HHhcch
Confidence            777775

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=87.92  E-value=28  Score=33.93  Aligned_cols=77  Identities=18%  Similarity=0.241  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004160          455 DLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELD  534 (771)
Q Consensus       455 ELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELN  534 (771)
                      .+..|+.++..++.++...+.....+..++......+.....   ++......++..-.++...++.++..+..+++.|+
T Consensus        74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke---e~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~  150 (151)
T PF11559_consen   74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE---ELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN  150 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333333333333333333333333333333333333332222   33444444555556777777777777777777664

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=87.71  E-value=40  Score=35.51  Aligned_cols=96  Identities=19%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160          383 RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE  462 (771)
Q Consensus       383 ~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e  462 (771)
                      .-++..++..+++.+..+.+--.+|..|+.++......+......+..++..+....-++...+..+....++..-+..+
T Consensus         9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek   88 (202)
T PF06818_consen    9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK   88 (202)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence            33455556666666666666666666666666666666666666666666665555555555555555555555555444


Q ss_pred             HHHHHHHHHHHHHHHH
Q 004160          463 IQNLKSKQASLQLILE  478 (771)
Q Consensus       463 iEqLKsEIesLq~ELE  478 (771)
                      +..+..++..+...+.
T Consensus        89 l~~le~El~~Lr~~l~  104 (202)
T PF06818_consen   89 LGQLEAELAELREELA  104 (202)
T ss_pred             hhhhHHHHHHHHHHHH
Confidence            4444444444444443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK10869 recombination and repair protein; Provisional

Probab=87.41  E-value=70  Score=37.97  Aligned_cols=33  Identities=12%  Similarity=0.235  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004160          509 EEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS  541 (771)
Q Consensus       509 EgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~s  541 (771)
                      +..+.++...+......+...-..|+..|.+..
T Consensus       340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA  372 (553)
T PRK10869        340 EDDLETLALAVEKHHQQALETAQKLHQSRQRYA  372 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555444455554444443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=87.31  E-value=1.1e+02  Score=40.07  Aligned_cols=76  Identities=22%  Similarity=0.264  Sum_probs=40.0

Q ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          333 SQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN  412 (771)
Q Consensus       333 s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~  412 (771)
                      +-..+--++.+..++...    ++.+..+-.....|..-+..+...++..-..+-.......++...-..++.....+..
T Consensus       738 ~~~~i~e~~~~l~~~~~e----l~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~  813 (1294)
T KOG0962|consen  738 IDKEIPELEKELQEVYEE----LGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSELDS  813 (1294)
T ss_pred             HhhhhhHHHHHHHHHHHH----HHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            334444444444444333    3334444455566666555565555555555555666665555555555555555554

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=87.26  E-value=56  Score=36.73  Aligned_cols=21  Identities=5%  Similarity=0.033  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 004160          591 FRLQTKQLEIELKFARENLRM  611 (771)
Q Consensus       591 Leeel~eLEqEleelReeLrE  611 (771)
                      ++-+..-.+.-|..+-..+.+
T Consensus       347 L~r~~~~~~~~y~~ll~r~~e  367 (444)
T TIGR03017       347 LQRDVENAQRAYDAAMQRYTQ  367 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=87.21  E-value=9.8  Score=34.38  Aligned_cols=59  Identities=24%  Similarity=0.430  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHH
Q 004160          318 RVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVE  380 (771)
Q Consensus       318 rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~  380 (771)
                      ||-.|||.||.|.-+--....+++.+-.+=+..+..|++|+..=|..|..    |+.++..+.
T Consensus         1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~e----LE~~h~kmK   59 (79)
T PF08581_consen    1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYE----LEQAHRKMK   59 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            67889999999998888888889999999999999999999988888764    445554443

; PDB: 3VP9_B 3VP8_B.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=87.07  E-value=69  Score=37.57  Aligned_cols=251  Identities=20%  Similarity=0.240  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Q 004160          272 EKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLL  351 (771)
Q Consensus       272 ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l  351 (771)
                      .-...+....-+++..|=.--.+|..--. |..+...-.....|   +..+++-.+.++.+.+.+|..|+.+-----.--
T Consensus       176 ~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e---~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~k  251 (511)
T PF09787_consen  176 GNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGE---LQEQLELLKAEGESEEAELQQYKQKAQRILQSK  251 (511)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCH
Confidence            33344444445666666444444444333 44444433333333   356788888889999999998883311111111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          352 GKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSL  431 (771)
Q Consensus       352 ~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesL  431 (771)
                      ++-++.|...  ....++.+--+.        .+|..++.+...++..+..++-+|..+..+++..+..+..-.......
T Consensus       252 EklI~~LK~~--~~~~~~~~~~~~--------~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~  321 (511)
T PF09787_consen  252 EKLIESLKEG--CLEEGFDSSTNS--------IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQ  321 (511)
T ss_pred             HHHHHHHHhc--ccccccccccch--------hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            1222223220  111111110001        445555555555555555555555555555555555444332222222


Q ss_pred             HHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160          432 QEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ  511 (771)
Q Consensus       432 QeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq  511 (771)
                      ..++...-......+..+.....++..+.   +.+......+...+.+...++......+...-    . .+.-..++..
T Consensus       322 ~~~~~~~~~~~~~~e~e~~l~~~el~~~~---ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~----~-~s~~~elE~r  393 (511)
T PF09787_consen  322 PQELSQQLEPELTTEAELRLYYQELYHYR---EELSRQKSPLQLKLKEKESEIQKLRNQLSARA----S-SSSWNELESR  393 (511)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh----c-cCCcHhHHHH
Confidence            22222211111111222333333332222   22233333334444444444444444433321    0 0122356777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 004160          512 LVQAMDTLQEKDEHVLILQNELDGTKLKVSEAE  544 (771)
Q Consensus       512 LeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqE  544 (771)
                      +..++..+=++...+..+..+=+.+.+++.+.+
T Consensus       394 l~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~  426 (511)
T PF09787_consen  394 LTQLTESLIQKQTQLESLGSEKNALRLQLERLE  426 (511)
T ss_pred             HhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence            777777777777777777777777777776663

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.81  E-value=32  Score=33.49  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHH
Q 004160          459 AKLEIQNLKSKQASLQLILEEKD  481 (771)
Q Consensus       459 Lq~eiEqLKsEIesLq~ELEEId  481 (771)
                      +.......+.++..+...++.+.
T Consensus       106 ~~~~~k~~kee~~klk~~~~~~~  128 (151)
T PF11559_consen  106 LEAKLKQEKEELQKLKNQLQQRK  128 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=86.52  E-value=59  Score=36.19  Aligned_cols=163  Identities=17%  Similarity=0.126  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHh----HHHHHHHHHHH
Q 004160          390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKES----DLVEAKLEIQN  465 (771)
Q Consensus       390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEn----ELeeLq~eiEq  465 (771)
                      -.-++....++..++.+-..|...+.+.++.-+.+..++.+....|...-.........-..++-    ...++..-...
T Consensus        55 tkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdk  134 (305)
T PF14915_consen   55 TKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDK  134 (305)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHH
Confidence            34455555556666666666666666666666666677776666665544444433333222222    22222333455


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004160          466 LKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS-------REEQLVQAMDTLQEKDEHVLILQNELDGTKL  538 (771)
Q Consensus       466 LKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes-------LEgqLeEleeeLkEkEE~L~~~q~ELNe~nI  538 (771)
                      |...++++...-+-+..+|+.+.++...+..++-.+..-+..       .+..+.+..-.++++++.+...++.++.+-.
T Consensus       135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~  214 (305)
T PF14915_consen  135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG  214 (305)
T ss_pred             hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            666677777777777888888888888887777666655444       4555555555555555555554444444322


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 004160          539 KVSEAETVVEQIVDLTH  555 (771)
Q Consensus       539 e~sQqEtl~eRIeeLt~  555 (771)
                         .++++.+|+.++..
T Consensus       215 ---Kqes~eERL~Qlqs  228 (305)
T PF14915_consen  215 ---KQESLEERLSQLQS  228 (305)
T ss_pred             ---HHHHHHHHHHHHHH
Confidence               33777777777553

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=86.32  E-value=28  Score=38.25  Aligned_cols=107  Identities=19%  Similarity=0.228  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160          405 ELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFEL  484 (771)
Q Consensus       405 keIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeEL  484 (771)
                      .+|.+++.++++++++-.+.+=.+++|..-++.       .......-..+...|+.+-..+-+..++++...+      
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqK-------QKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq------   84 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQK-------QKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ------   84 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH------
Confidence            456666666666666655554444444444433       2222333333333333333333333333333333      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160          485 SNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNE  532 (771)
Q Consensus       485 eeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~E  532 (771)
                              .+..++..-..++..++|++.-....+..++..+....++
T Consensus        85 --------Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE  124 (307)
T PF10481_consen   85 --------KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE  124 (307)
T ss_pred             --------HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    3334444445555555555555555555544444443333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=85.96  E-value=80  Score=37.25  Aligned_cols=85  Identities=19%  Similarity=0.200  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          348 EHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDE  427 (771)
Q Consensus       348 ~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeE  427 (771)
                      ..-|+.|..+|.+|=..+|-.-+       -++-=+.+-|..+....-++....+++.+....-+.+.+++.+.+...++
T Consensus       273 i~~lk~~n~~l~e~i~ea~k~s~-------~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEee  345 (622)
T COG5185         273 IANLKTQNDNLYEKIQEAMKISQ-------KIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEE  345 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            34455566666655554443211       11122233344444444444444444444444445555555555555555


Q ss_pred             HHHHHHHHhHHh
Q 004160          428 VSSLQEELGRKN  439 (771)
Q Consensus       428 IesLQeELqele  439 (771)
                      +..|+.....+.
T Consensus       346 i~~L~~~~d~L~  357 (622)
T COG5185         346 IKALQSNIDELH  357 (622)
T ss_pred             HHHHHhhHHHHH
Confidence            555555444443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=85.57  E-value=52  Score=34.69  Aligned_cols=11  Identities=9%  Similarity=0.190  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHh
Q 004160          548 EQIVDLTHKLV  558 (771)
Q Consensus       548 eRIeeLt~eLe  558 (771)
                      ++++.+.....
T Consensus       165 RsVakLeke~D  175 (205)
T KOG1003|consen  165 RRVAKLEKERD  175 (205)
T ss_pred             HHHHHHcccHH
Confidence            34444433333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.54  E-value=1.2e+02  Score=38.82  Aligned_cols=177  Identities=15%  Similarity=0.242  Sum_probs=76.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhH
Q 004160          503 MIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLE  578 (771)
Q Consensus       503 slIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eee  578 (771)
                      ..+..+...+.+....+++...-+....+.+..+--.+... ..-..++.+++.+|....    ..+.......   ...
T Consensus       741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k----~~~e~~~~~~ek~~~e  816 (1174)
T KOG0933|consen  741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAK----QRAEESSKELEKRENE  816 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            33334444444444555555444444444444333333333 222333334443333332    2222222222   333


Q ss_pred             hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhh-H
Q 004160          579 LMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDAND-L  657 (771)
Q Consensus       579 L~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d-~  657 (771)
                      .  +.|..+.+.++..+...++.+..+...+..++.++..++-.++.-..+.+.+...+       ...-..+-|-++ +
T Consensus       817 ~--e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el-------~~~k~k~~~~dt~i  887 (1174)
T KOG0933|consen  817 Y--ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAEL-------KDQKAKQRDIDTEI  887 (1174)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH-------HHHHHHHHhhhHHH
Confidence            3  44444445555555555555555555555555555555544444333333333322       222111111111 2


Q ss_pred             HHHHHHHhhhhcccccchhHHHHHhHHHhhHHHHH
Q 004160          658 RKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEA  692 (771)
Q Consensus       658 ~~~~~~~~e~~~~~~~~~~~~~~l~~eaa~~e~~a  692 (771)
                      ..+..--.--+-++++|.+.+++|.-+---.+-++
T Consensus       888 ~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~  922 (1174)
T KOG0933|consen  888 SGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEK  922 (1174)
T ss_pred             hhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhH
Confidence            12222111125578889888877766655554433

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.49  E-value=19  Score=39.80  Aligned_cols=99  Identities=20%  Similarity=0.241  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHH
Q 004160          378 EVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLV  457 (771)
Q Consensus       378 e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELe  457 (771)
                      -+.++. -++.++..+.+++.++-+..=--+.|+|+...+-.....+...+..+++.+.++..++.+..+.++.....+.
T Consensus        72 S~dse~-s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d  150 (302)
T PF09738_consen   72 SVDSEA-SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHD  150 (302)
T ss_pred             cccccc-cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 6788899999999999998888888888888888887777777777777777766666666555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 004160          458 EAKLEIQNLKSKQASLQLIL  477 (771)
Q Consensus       458 eLq~eiEqLKsEIesLq~EL  477 (771)
                      .++.+...++..+......|
T Consensus       151 ~L~~e~~~Lre~L~~rdeli  170 (302)
T PF09738_consen  151 SLREELDELREQLKQRDELI  170 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555554444444

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=85.28  E-value=1.1e+02  Score=37.99  Aligned_cols=83  Identities=28%  Similarity=0.348  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          355 LVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE  434 (771)
Q Consensus       355 ~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE  434 (771)
                      ..||++-=-++---.-+|+-.|+|.+|=.-.++.+.++..-|..++-.+...-.+.+.++...=..|+.-.+....|+.|
T Consensus        99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkE  178 (717)
T PF09730_consen   99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKE  178 (717)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455544444444557888899999888888888888888887777776666666666555444444444455556666


Q ss_pred             HhH
Q 004160          435 LGR  437 (771)
Q Consensus       435 Lqe  437 (771)
                      |..
T Consensus       179 L~~  181 (717)
T PF09730_consen  179 LDQ  181 (717)
T ss_pred             HHH
Confidence            544

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF13514 AAA_27: AAA domain

Probab=85.24  E-value=1.2e+02  Score=38.75  Aligned_cols=232  Identities=19%  Similarity=0.275  Sum_probs=107.9

Q ss_pred             hhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------hHHHHhHHHHH--------------hhHHHH
Q 004160          174 RHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKK--------SEEAAKIDSEL--------------KSKAQM  231 (771)
Q Consensus       174 ~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k--------~~e~~~~~~e~--------------~~k~~~  231 (771)
                      .+|........+.++.+..++..+..-..++..+...+-.=        .++++..|..=              ..=+..
T Consensus       452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a  531 (1111)
T PF13514_consen  452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAA  531 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHH
Confidence            35666666666666666666666666666666554443221        22333333310              011222


Q ss_pred             hHHHhHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 004160          232 LNEANEVVKKQ------ETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRR  305 (771)
Q Consensus       232 l~~an~~~~~q------e~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~  305 (771)
                      +..|..+..+.      -+++..++..+..-...+..       -...+..+++.+..-.-.|-..=.-        +- 
T Consensus       532 ~~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~W~~~~~~--------~g-  595 (1111)
T PF13514_consen  532 VREADELADRRLREAERAARLAQLRARLEEARARLAR-------AQARLAAAEAALAALEAAWAALWAA--------AG-  595 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh--------cC-
Confidence            34444444332      23444444444444433333       2345555666666666666432211        11 


Q ss_pred             hHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHH
Q 004160          306 MEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVK  385 (771)
Q Consensus       306 ~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~  385 (771)
                      ....-..|-+|.+-+.=+-.-..++......+...+.........|...+..+..        ..+|...-...+.-...
T Consensus       596 ~p~~p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~l~~~l~~a~~~~~~  667 (1111)
T PF13514_consen  596 LPLSPAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGP--------AEELAALLEEAEALLEE  667 (1111)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------cccHHHHHHHHHHHHHH
Confidence            1122255555543333222223444444455555444444444444444433333        23344333344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVS  429 (771)
Q Consensus       386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIe  429 (771)
                      ..........++..+......+...+..+......+........
T Consensus       668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  711 (1111)
T PF13514_consen  668 WEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ  711 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555554433

>PF13166 AAA_13: AAA domain

Probab=85.13  E-value=93  Score=37.24  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=12.6

Q ss_pred             CCCCCC--CCCCCCchHHHHHHHHHH
Q 004160           51 GKKSSV--NGYGLGEPARILLERLFA   74 (771)
Q Consensus        51 ~~~~~~--~~~g~~e~ar~llerlf~   74 (771)
                      .++-++  |.||++=+.   |-|+|.
T Consensus        15 ~~~~n~IYG~NGsGKSt---lsr~l~   37 (712)
T PF13166_consen   15 FKKINLIYGRNGSGKST---LSRILK   37 (712)
T ss_pred             CCceEEEECCCCCCHHH---HHHHHH
Confidence            335555  788877663   455665

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=85.02  E-value=70  Score=35.71  Aligned_cols=223  Identities=21%  Similarity=0.258  Sum_probs=113.5

Q ss_pred             HHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhh---hHHHHHHHhHHHHHHHHHHHHHHHHHH----------HH-HHH
Q 004160          301 EASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQ---KSLASSRKQMEEQEHLLGKQLVELEEQ----------KK-SLT  366 (771)
Q Consensus       301 ~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~---~~~~~sr~~~e~q~~~l~~q~~el~~q----------~~-~~~  366 (771)
                      ..+.+......|-.|-.-|-.||...-.-|.-+-   ++|-..-..+.++-..|..++..-.++          |. ++-
T Consensus        49 Lc~~rv~qmtkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~  128 (306)
T PF04849_consen   49 LCSDRVSQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQ  128 (306)
T ss_pred             hcccchhhhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666688899999999887666555432   344444444444444444433222221          22 222


Q ss_pred             HHHhhhHHHhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          367 SYMTSLKDAQVEVES--------------ERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQ  432 (771)
Q Consensus       367 s~~~~l~~a~~e~~~--------------~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQ  432 (771)
                      -|..+=.+.--+-.+              ....+..++..++.|+..-..+..+...|...-...+..=..+..+   +-
T Consensus       129 ~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d---cv  205 (306)
T PF04849_consen  129 IYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD---CV  205 (306)
T ss_pred             hcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH---HH
Confidence            233222111111000              1123444555555555555555555555554444333333333222   45


Q ss_pred             HHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160          433 EELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQL  512 (771)
Q Consensus       433 eELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqL  512 (771)
                      .++...+..+..+...+.....+...-+..|..+..++..++.....+-.+-......+...+.-...|...+..+++..
T Consensus       206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY  285 (306)
T PF04849_consen  206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY  285 (306)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666666666666666666666666666666665555555555544444444444444444444


Q ss_pred             HHHHHHHHHHHHHH
Q 004160          513 VQAMDTLQEKDEHV  526 (771)
Q Consensus       513 eEleeeLkEkEE~L  526 (771)
                      .+.-.+|.+..+.+
T Consensus       286 ~E~~~mL~EaQEEl  299 (306)
T PF04849_consen  286 AECMAMLHEAQEEL  299 (306)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444444

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=85.00  E-value=55  Score=34.51  Aligned_cols=89  Identities=22%  Similarity=0.240  Sum_probs=44.9

Q ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 004160          370 TSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL  449 (771)
Q Consensus       370 ~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeI  449 (771)
                      +-|++||.||-.+.-       ++..|.-++-.....+...+..+..+...+....-++..++.+++...++..-+...+
T Consensus        17 qQLke~q~E~~~K~~-------Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl   89 (202)
T PF06818_consen   17 QQLKESQAEVNQKDS-------EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKL   89 (202)
T ss_pred             HHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Confidence            457888877755443       3334444444444444444444555555554444555555555555444444444444


Q ss_pred             HHHHhHHHHHHHHHHH
Q 004160          450 RVKESDLVEAKLEIQN  465 (771)
Q Consensus       450 eelEnELeeLq~eiEq  465 (771)
                      ..++.++..+......
T Consensus        90 ~~le~El~~Lr~~l~~  105 (202)
T PF06818_consen   90 GQLEAELAELREELAC  105 (202)
T ss_pred             hhhHHHHHHHHHHHHh
Confidence            4444444444444333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=84.13  E-value=35  Score=37.56  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160          446 ENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEH  525 (771)
Q Consensus       446 ekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~  525 (771)
                      -..|+.++..+..|+.+..+-+=.+++++..++.-..+..........+.-|...|-..-++++..-..+...+.-++.+
T Consensus        17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q   96 (307)
T PF10481_consen   17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ   96 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence            34566667777777776666666666666666666666666666666666666666666666666667777777777777


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 004160          526 VLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISN  561 (771)
Q Consensus       526 L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~  561 (771)
                      +.-+...|+..+-   +.+.+...|..++.+|+.+.
T Consensus        97 v~~lEgQl~s~Kk---qie~Leqelkr~KsELErsQ  129 (307)
T PF10481_consen   97 VNFLEGQLNSCKK---QIEKLEQELKRCKSELERSQ  129 (307)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            7766666665544   44667777888888887755

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=84.00  E-value=1.2e+02  Score=37.47  Aligned_cols=164  Identities=21%  Similarity=0.231  Sum_probs=84.8

Q ss_pred             CCCCCCchHHHHHHHHHHhhhhhhhhccCCCCCCcccccCchHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhH
Q 004160           57 NGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNR  136 (771)
Q Consensus        57 ~~~g~~e~ar~llerlf~~t~~l~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~  136 (771)
                      ..||.+|..++++.-|.-+-                    .++.-+=.++.+++..+=.+=..|.+.=.+++.   +.+.
T Consensus        38 ~~~~~~e~l~~~~~~L~~e~--------------------e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~---~~~e   94 (698)
T KOG0978|consen   38 RLNRVEEALTVLFDELAEEN--------------------EKLQNLADHLQEKHATLSEQISELLDKISTAET---EVDE   94 (698)
T ss_pred             hhhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHH
Confidence            45556666666666555532                    233444445555555555554455544333333   3333


Q ss_pred             hHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHH-------hhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 004160          137 AKEELLRREREIDVACSRHEKLEEELGQSNLKLVS-------QARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRS  209 (771)
Q Consensus       137 ~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~-------q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~  209 (771)
                      -+..++----++..-+.+..++..-+..+-..+.+       ++..|--..-.+++--..|.-.+..=+..-.++++++.
T Consensus        95 ~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~  174 (698)
T KOG0978|consen   95 LEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGNGNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQL  174 (698)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHH
Confidence            33333333444555555666666666555544444       45554444444444444455544444555566666666


Q ss_pred             HHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHH
Q 004160          210 ELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLR  250 (771)
Q Consensus       210 ~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~  250 (771)
                      ...+....+..+++++       ..++.-+...-.+++.++
T Consensus       175 ~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~e~~~~~  208 (698)
T KOG0978|consen  175 YSDEILRQLDRFRVEL-------RSLKEKVRSETFELRCLQ  208 (698)
T ss_pred             HHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHH
Confidence            6666666666666555       445555555555555444

>KOG2196 consensus Nuclear porin [Nuclear structure]

Probab=83.85  E-value=69  Score=34.74  Aligned_cols=84  Identities=10%  Similarity=0.081  Sum_probs=65.5

Q ss_pred             HHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHH
Q 004160          364 SLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFG  443 (771)
Q Consensus       364 ~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELq  443 (771)
                      +|.+|...|.+---=.....+++|.--..+.+...+++.+-.++........++.++|+.+......|..-+..+++.+.
T Consensus        79 liNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~  158 (254)
T KOG2196|consen   79 LINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLE  158 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47778777777655566677889999999999999999999999999999999999988887776666666666655555


Q ss_pred             HHHH
Q 004160          444 ETEN  447 (771)
Q Consensus       444 Elek  447 (771)
                      ....
T Consensus       159 ~~~g  162 (254)
T KOG2196|consen  159 LQSG  162 (254)
T ss_pred             cccc
Confidence            5433

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=83.62  E-value=1.2e+02  Score=37.16  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=16.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160          451 VKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNAR  488 (771)
Q Consensus       451 elEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiq  488 (771)
                      .++...-+|-.++.+++-++..++.+..+...++....
T Consensus       171 sLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se  208 (861)
T KOG1899|consen  171 SLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSE  208 (861)
T ss_pred             hHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHH
Confidence            33334444444444444444444444444443333333

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=83.56  E-value=1e+02  Score=37.80  Aligned_cols=41  Identities=22%  Similarity=0.245  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          387 RVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDE  427 (771)
Q Consensus       387 ~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeE  427 (771)
                      +.+-++...+...+..+..++...++.+.+....+...+.+
T Consensus       171 ~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~  211 (670)
T KOG0239|consen  171 DLALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEE  211 (670)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            33444444444444444444444444444444444443333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=83.33  E-value=69  Score=34.29  Aligned_cols=10  Identities=30%  Similarity=0.514  Sum_probs=3.8

Q ss_pred             HHHHHHHHhH
Q 004160          428 VSSLQEELGR  437 (771)
Q Consensus       428 IesLQeELqe  437 (771)
                      +..|..++..
T Consensus        35 a~~Leek~k~   44 (246)
T PF00769_consen   35 AEELEEKLKQ   44 (246)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=83.00  E-value=87  Score=37.24  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160          444 ETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE  509 (771)
Q Consensus       444 ElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE  509 (771)
                      .+.+.+...+.....++..++....+....+.++-.+-.+|..++.++..+.-+.+++...+..+.
T Consensus       202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~  267 (596)
T KOG4360|consen  202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK  267 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444555555555555555555444444433

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=82.74  E-value=2.4  Score=47.03  Aligned_cols=81  Identities=12%  Similarity=0.147  Sum_probs=15.0

Q ss_pred             HHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160          428 VSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS  507 (771)
Q Consensus       428 IesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes  507 (771)
                      +...+.+|..+...+..++..+..+...+..+...+....+.|..++..+..+...+...+..+...--.+..|+.++..
T Consensus        72 l~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~  151 (326)
T PF04582_consen   72 LADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA  151 (326)
T ss_dssp             ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence            33333333333333333444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             H
Q 004160          508 R  508 (771)
Q Consensus       508 L  508 (771)
                      +
T Consensus       152 L  152 (326)
T PF04582_consen  152 L  152 (326)
T ss_dssp             H
T ss_pred             H
Confidence            3

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.66  E-value=45  Score=35.22  Aligned_cols=42  Identities=12%  Similarity=0.185  Sum_probs=17.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004160          445 TENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSN  486 (771)
Q Consensus       445 lekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELee  486 (771)
                      ++..++....+...+..++..+..+++.++.....+...+..
T Consensus        40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~   81 (251)
T PF11932_consen   40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVAS   81 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.14  E-value=1.4e+02  Score=36.99  Aligned_cols=48  Identities=21%  Similarity=0.280  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160          496 NEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA  543 (771)
Q Consensus       496 ~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq  543 (771)
                      +|+..|+.++...+..-..+...+++...++...+..++...-+++++
T Consensus       265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L  312 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRL  312 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666677777777777777666666665555555

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=81.64  E-value=71  Score=33.25  Aligned_cols=105  Identities=16%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004160          360 EQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKN  439 (771)
Q Consensus       360 ~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqele  439 (771)
                      .-...|.-|...+.+|+.-|+.+...|...+.-...-..-.-+....+..|..-+...+..+.+...-...-+.++.+..
T Consensus        64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~  143 (188)
T PF05335_consen   64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKT  143 (188)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456777777888888888888888887777777777777777777777777666666666666655555555555544


Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160          440 TEFGETENLLRVKESDLVEAKLEIQ  464 (771)
Q Consensus       440 kELqElekeIeelEnELeeLq~eiE  464 (771)
                      .-+.....++..+...+...+.+.+
T Consensus       144 qLLeaAk~Rve~L~~QL~~Ar~D~~  168 (188)
T PF05335_consen  144 QLLEAAKRRVEELQRQLQAARADYE  168 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=81.47  E-value=26  Score=42.13  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=10.5

Q ss_pred             HHHHHHhhhhhHHHHHHHhHH
Q 004160          325 DVRSELVSSQKSLASSRKQME  345 (771)
Q Consensus       325 ~vr~el~~s~~~~~~sr~~~e  345 (771)
                      ..|.=|-++=+|+.+++.+.+
T Consensus       342 H~RDALAAA~kAY~~yk~kl~  362 (652)
T COG2433         342 HERDALAAAYKAYLAYKPKLE  362 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555444

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=81.39  E-value=30  Score=37.15  Aligned_cols=62  Identities=18%  Similarity=0.256  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160          463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDE  524 (771)
Q Consensus       463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE  524 (771)
                      .+++..+-+.+-.+++++..+++..+.++..+.-+...|..+...+.|....+...+.+++.
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~  205 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence            33333333333333333333333333444444444444444444444444444444444443

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=81.38  E-value=1.3e+02  Score=36.08  Aligned_cols=132  Identities=23%  Similarity=0.305  Sum_probs=73.7

Q ss_pred             HHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHHHHHHhhhhHHHHH
Q 004160          112 ALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIA  191 (771)
Q Consensus       112 ~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~lk~~~~~~~~~~~  191 (771)
                      .+=.=|++|-+||.  +-|.-+.++|+..++.-|.-|..+-.-.+.+.+.+...-..=---...|...+-+-++-.+.+.
T Consensus        79 ~fadvEE~lfeAE~--~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl  156 (570)
T COG4477          79 SFADVEEHLFEAEA--LADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVL  156 (570)
T ss_pred             hcccHHHHHHHHHH--hhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            34456889999996  5688999999999998888888777666666655543211111112222222333333333444


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhH-----HHhHHHHHhHHHHHHHHHHHHH
Q 004160          192 AMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLN-----EANEVVKKQETEIQSLRKVIQE  255 (771)
Q Consensus       192 ~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~-----~an~~~~~qe~~~~~l~~~~~~  255 (771)
                      +-...++.--.+++|          ....+.++|..=+-+=+     +|-+|+..++-.+..|++-+++
T Consensus       157 ~n~~~~Ge~~~~lEk----------~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~  215 (570)
T COG4477         157 ANRHQYGEAAPELEK----------KLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMER  215 (570)
T ss_pred             HhhhhhhhhhHHHHH----------HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444433333332          23334444444333322     5667777777777777766654

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=81.23  E-value=31  Score=41.48  Aligned_cols=32  Identities=34%  Similarity=0.452  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          404 KELVEELQNELNKEKYSLQQAIDEVSSLQEEL  435 (771)
Q Consensus       404 ekeIeeLr~qLqkekqeLEelqeEIesLQeEL  435 (771)
                      .+.+..++.++..++..++++...+..|..++
T Consensus       428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l  459 (652)
T COG2433         428 EETVERLEEENSELKRELEELKREIEKLESEL  459 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=81.19  E-value=1.3e+02  Score=35.92  Aligned_cols=95  Identities=24%  Similarity=0.254  Sum_probs=52.4

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160          440 TEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTL  519 (771)
Q Consensus       440 kELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeL  519 (771)
                      ..+.++...+.....+.......-+.+..++...+..++.+.++|......+..++.   +|.....++|+++.-+++-+
T Consensus       420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD---EL~TTr~NYE~QLs~MSEHL  496 (518)
T PF10212_consen  420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD---ELETTRRNYEEQLSMMSEHL  496 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHH
Confidence            444455555555555555555555555555555555555555555555555555544   33444455666666666666


Q ss_pred             HHHHHHHHHHHHhhhhhh
Q 004160          520 QEKDEHVLILQNELDGTK  537 (771)
Q Consensus       520 kEkEE~L~~~q~ELNe~n  537 (771)
                      --+.++|..-.++++.++
T Consensus       497 asmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  497 ASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            665555555555555554

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=80.37  E-value=87  Score=33.51  Aligned_cols=7  Identities=0%  Similarity=0.292  Sum_probs=1.4

Q ss_pred             hccchhH
Q 004160          585 DKGNDNF  591 (771)
Q Consensus       585 ekereeL  591 (771)
                      +..|-.+
T Consensus       174 EeeR~t~  180 (246)
T PF00769_consen  174 EEERVTY  180 (246)
T ss_dssp             GGC---H
T ss_pred             HHHHHHH
Confidence            3333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	771
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-22
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-09
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-08
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-07
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-08
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	2e-04
4dvy_P	877	Cytotoxicity-associated immunodominant antigen; on	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  100 bits (250), Expect = 8e-22
 Identities = 66/335 (19%), Positives = 138/335 (41%), Gaps = 7/335 (2%)

Query: 200  KELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEE 259
            +E E++    EL +  E   K ++ELK   Q   +  E     + ++Q+  ++  E EE 
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 260  LEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRV 319
                 A ++  EE L  +EA +E+        Q   KK+ ++    M +  + LE+    
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ----MLDLEEQLEEEEAA 970

Query: 320  KKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEV 379
            ++ L   +       K +      ME+Q + L K+   LEE+   LT+ +   ++    +
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 380  ESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKN 439
               + K    E+   ELE  L  E++  +EL+    K +       ++++ LQ ++    
Sbjct: 1031 TKLKNKH---ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 440  TEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVR 499
             +  + E  L+   + L +   +  N   K   L+  + +   +L + +    +   + R
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147

Query: 500  ELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELD 534
            +L   + + + +L   +DT   + E       + D
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =   99 bits (249), Expect = 1e-21
 Identities = 57/348 (16%), Positives = 136/348 (39%), Gaps = 20/348 (5%)

Query: 136  RAKEELLRREREIDVACSRHEKLE---EELGQSNLKLVSQARHIEDLKLRLKERDQEIAA 192
            R +EE+  ++ E+     R +K E   +EL Q + +L  +   +++      E   E   
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 193  MQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKV 252
            M+  L+ K+ ELE++  E+  + EE  +   +L+++           KK + ++  L + 
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK----------KKMQQQMLDLEEQ 963

Query: 253  IQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDT 312
            ++E+E   +     +   + K+K     +E   +      + L K  +    R+ +    
Sbjct: 964  LEEEEAARQKLQLEKVTADGKIK----KMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 313  LEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSL 372
            L +     K L+ ++++  S    L    K+ E+    L K   +LE +   L   +  L
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAEL 1079

Query: 373  KDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQ 432
            +    E++++  K    E   +     L  E         ++ + +  +    +++ S +
Sbjct: 1080 QAQIAELKAQLAKK---EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136

Query: 433  EELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEK 480
                +   +  +    L   +++L +        +  + S     ++K
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 96.4 bits (240), Expect = 1e-20
 Identities = 68/348 (19%), Positives = 144/348 (41%), Gaps = 28/348 (8%)

Query: 217  EAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKV 276
            +  + + E+++K + L    E  +K E E++ L +   +  EE   ++   K++ E    
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE--KNLLQEKLQAETELY 908

Query: 277  VEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKS 336
             EA   +  +     +  L+++  E   R+EE  +  +  +  KK +     +L    + 
Sbjct: 909  AEAEEMRVRLAAKKQE--LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966

Query: 337  LASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKEL 396
              ++R++++ ++          + + K +   +  ++D   ++  ER  L   E R  +L
Sbjct: 967  EEAARQKLQLEKV-------TADGKIKKMEDDILIMEDQNNKLTKERKLL---EERVSDL 1016

Query: 397  ERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDL 456
              +L+ E    EE    L K K   +  I E   L+  L ++     E E + R  E + 
Sbjct: 1017 TTNLAEE----EEKAKNLTKLKNKHESMISE---LEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 457  VEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEE-------LNNEVRELKMIMSSRE 509
             +   +I  L+++ A L+  L +K+ EL  A   LE+          ++REL+  +S  +
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 510  EQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKL 557
            E L        + ++    L  EL+  K ++ +         +L    
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.8 bits (189), Expect = 2e-14
 Identities = 56/297 (18%), Positives = 122/297 (41%), Gaps = 23/297 (7%)

Query: 65   ARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAE 124
            A  +  RL A+ Q+LEE +          +    +E  E   Q + A  KK ++ + D E
Sbjct: 911  AEEMRVRLAAKKQELEEILH---------EMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961

Query: 125  RRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLK 184
             ++  E +   + + E +  + +I       +K+E+++     +     +  + L+ R+ 
Sbjct: 962  EQLEEEEAARQKLQLEKVTADGKI-------KKMEDDILIMEDQNNKLTKERKLLEERVS 1014

Query: 185  ERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQET 244
            +    +A  +     K   L K++++      E   ++  LK + +   E  ++ +K E 
Sbjct: 1015 DLTTNLAEEEE----KAKNLTKLKNKHESMISE---LEVRLKKEEKSRQELEKIKRKLEG 1067

Query: 245  EIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASR 304
            E   L + I E + ++    A    +EE+L+   A LE  T +   +   +++L    S 
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127

Query: 305  RMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQ 361
              E+         + +K   D+  EL + +  L  +      Q+ L G    + +++
Sbjct: 1128 LQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.0 bits (187), Expect = 3e-14
 Identities = 48/340 (14%), Positives = 123/340 (36%), Gaps = 10/340 (2%)

Query: 317  RRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQ 376
             R ++ +     EL  +++    +  +++E E    +   E    ++ L +      +A+
Sbjct: 853  TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912

Query: 377  VEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELG 436
                    K +  E    E+E  +  E+E  ++LQ E  K +  +    +++   +    
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 437  RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNN 496
            +   E    +  ++  E D++  + +   L  ++  L+  + +    L+   +  + L  
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 497  EVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHK 556
               + + ++S  E +L +   + QE ++    L+ E      +++E +  + ++     K
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 557  LVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEV 616
                 +   +              +    K           L+ +L    E+ +    + 
Sbjct: 1093 KEEELQAALARLED------ETSQKNNALKKIRELESHISDLQEDL----ESEKAARNKA 1142

Query: 617  LAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDAND 656
               KR L+ + E LKT L          ++L  +    +D
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 67/342 (19%), Positives = 131/342 (38%), Gaps = 29/342 (8%)

Query: 372  LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSL 431
            ++    E++  + + +  EA  KELE+  +   E    LQ +L  E     +A +    L
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918

Query: 432  QEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQML 491
              +         E E  +  +E    + + E + ++ +   L+  LEE++      +   
Sbjct: 919  AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978

Query: 492  EELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIV 551
               + ++++++  +   E+Q  +     +E+      L+  +      ++E E   + + 
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLT---KERKL----LEERVSDLTTNLAEEEEKAKNLT 1031

Query: 552  DLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRM 611
             L +K                    LE+  +  +K         ++LE E     E +  
Sbjct: 1032 KLKNKHESMISE-------------LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

Query: 612  KEMEVLAAKRALTVKDEELKTVLGRLD----AKEKELKKLEETVEDANDLR-KLYALAQE 666
             + ++   K  L  K+EEL+  L RL+     K   LKK+ E     +DL+  L +    
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA 1138

Query: 667  RFG-EKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGEL 707
            R   EK   DL+ E   LEA + E+E          E+ G  
Sbjct: 1139 RNKAEKQKRDLSEE---LEALKTELEDTLDTTATQQELRGSD 1177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 86.8 bits (214), Expect = 1e-17
 Identities = 94/593 (15%), Positives = 191/593 (32%), Gaps = 163/593 (27%)

Query: 6   RFSSNHLHLNPNPKVHWKHKLPGRYVTSGKRRVRSLGLVRAV--LPDGKKSSVNG-YGLG 62
            +      L  + +V  K+ +         R    L L +A+  L   K   ++G  G G
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVS--------RLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 63  EPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNL-------EILESDLQAVLAALKK 115
           +     +      + K++ +M  D  +     F LNL        +LE  LQ +L  +  
Sbjct: 163 KTW---VALDVCLSYKVQCKM--DFKI-----FWLNLKNCNSPETVLEM-LQKLLYQIDP 211

Query: 116 KEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKL--VSQA 173
                 D    + L    +      LL           + +  E  L    L L  V  A
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLL-----------KSKPYENCL----LVLLNVQNA 256

Query: 174 RHIEDLKLRLK----ERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKA 229
           +      L  K     R +++    SA +   + L+     L    +E   +        
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSL-------- 306

Query: 230 QMLNEANEVVKKQETEIQSLRKVIQEKEEEL--EASVALRKVEEEKLKVVEANLEKRTME 287
                              L K +  + ++L  E           +L ++  ++      
Sbjct: 307 -------------------LLKYLDCRPQDLPREV----LTTNPRRLSIIAESIRDGLAT 343

Query: 288 WLLSQDALKKLAEEA-SRRMEETNDTLE--DFRRVKKLLS----DVRSELVSSQKSLASS 340
           W    D  K +  +  +  +E + + LE  ++R++   LS          + +   L+  
Sbjct: 344 W----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPTI-LLSLI 395

Query: 341 RKQMEEQE------HLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNK 394
              + + +       L    L  +E+Q K  T     +    +E++              
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSL--VEKQPKESTIS---IPSIYLELK-------------V 437

Query: 395 ELERDLSMEKELVEELQNELNKEKYSLQQAID--EVSSLQEE------LGR--KNTEFGE 444
           +LE + ++ + +V         + Y++ +  D  ++     +      +G   KN E  E
Sbjct: 438 KLENEYALHRSIV---------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 445 TENLLRVKESDL--VEAKLEIQ--NLKSKQASLQLILEEKDFE--LSNARQMLEELNNEV 498
              L R+   D   +E K+        +  + L  + + K ++  + +     E L   V
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL---V 545

Query: 499 RELKMIMSSREEQLVQA--MDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQ 549
             +   +   EE L+ +   D L+      + L  E +       EA   V++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLR------IALMAEDEAI---FEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 7e-14
 Identities = 95/681 (13%), Positives = 208/681 (30%), Gaps = 207/681 (30%)

Query: 155 HEKLEEELGQSNLK-----LVSQARHIEDLKLRLKERDQEIAAMQSALSLKELE---LEK 206
           H  ++ E G+   +      V +   +++   +  + D      +S LS +E++   + K
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-D----MPKSILSKEEIDHIIMSK 58

Query: 207 MRSE--------LLKKSEE-----------------AAKIDSELKSKAQMLNEANEVVKK 241
                       LL K EE                  + I +E +  + M     E   +
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 242 QETEIQSLRKV-IQEKEEELEASVALRKVEEEKLKVVEANLEKRTM----EWLLSQDALK 296
              + Q   K  +   +  L+   AL ++   K  +++       +    +  ++ D   
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG------VLGSGKTWVALDVCL 172

Query: 297 KLAEEASRRME---------ETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQ 347
             + +   +M+           N        ++KLL  +     S     ++ + ++   
Sbjct: 173 --SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 348 EHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERV--------KLRVTEARNKELERD 399
           +  L ++L++ +  +  L      L +    V++ +         K+ +T  R K++   
Sbjct: 231 QAEL-RRLLKSKPYENCLLV----LLN----VQNAKAWNAFNLSCKILLT-TRFKQVTDF 280

Query: 400 LSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENL----LRVKESD 455
           LS        L                   +L  +         E ++L    L  +  D
Sbjct: 281 LSAATTTHISL--------------DHHSMTLTPD---------EVKSLLLKYLDCRPQD 317

Query: 456 LVEAKLEIQNLKSKQASLQLILEE-KDFELSNAR-QMLEELNNEVRELKMIMSSREEQL- 512
           L    L     +     L +I E  +D     A     + +N +  +L  I+ S    L 
Sbjct: 318 LPREVLTTNPRR-----LSIIAESIRDG---LATWDNWKHVNCD--KLTTIIESSLNVLE 367

Query: 513 ---VQAM-DTLQ--EKD----EHVL-ILQNELDGTKLKVSEAETVVEQIVDLTHKLVISN 561
               + M D L            +L ++  ++          ++ V  +V+  HK     
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------KSDVMVVVNKLHKY---- 414

Query: 562 KNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAA-- 619
                  S+             ++K      +    + +ELK   EN       ++    
Sbjct: 415 -------SL-------------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 620 -KRALTVKDEELKTV-------LGRLDAKEKELKKLEETVEDANDLRKLYALAQERFGEK 671
             +     D     +       +G        LK +E   E     R ++          
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGH------HLKNIEHP-ERMTLFRMVFL--------- 498

Query: 672 SVGDLA-IERLQLEAAQLEVEAATSALQKLTEMSGELLNKASLSIETDTDNTIFPESRFD 730
              D   +E+ ++        A+ S L  L +     L      I    DN    + +++
Sbjct: 499 ---DFRFLEQ-KIRHDSTAWNASGSILNTLQQ-----LKFYKPYI---CDN----DPKYE 542

Query: 731 PRISVIENNECLTEVGSEVAR 751
             ++ I +   L ++   +  
Sbjct: 543 RLVNAILDF--LPKIEENLIC 561

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 78.2 bits (193), Expect = 6e-15
 Identities = 32/260 (12%), Positives = 82/260 (31%), Gaps = 12/260 (4%)

Query: 136  RAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQS 195
              ++             +             +    ++  I+        R      +++
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889

Query: 196  ALSLKELELEKM-RSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQ 254
             + L+      M + EL K   EA  ++   K    +           E +I  L++ I 
Sbjct: 890  IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL-----------ENKIMQLQRKID 938

Query: 255  EKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLE 314
            E+ +E ++ +      E         L        +S++  K          EE     +
Sbjct: 939  EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998

Query: 315  DFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKD 374
            +  + +     +       +        +++EQ  LL  +  EL  +       +T   +
Sbjct: 999  ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME 1058

Query: 375  AQVEVESERVKLRVTEARNK 394
             ++  E+++++L + + R +
Sbjct: 1059 KKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 45/342 (13%), Positives = 122/342 (35%), Gaps = 24/342 (7%)

Query: 203  ELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSL--RKVIQEKEEEL 260
             LEK+R++ L+ +    +I   ++            +++    IQ        +     L
Sbjct: 758  YLEKIRADKLRAA--CIRIQKTIRGWLMRKKYMR--MRRAAITIQRYVRGHQARCYATFL 813

Query: 261  EASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVK 320
              + A   ++    K     + ++  + +       +          +    L +  +  
Sbjct: 814  RRTRAAIIIQ----KFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE-HKSI 868

Query: 321  KLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVE 380
             +   VR  L  ++     + K +   +    + + + E +K         LK     VE
Sbjct: 869  IIQKHVRGWL--ARVHYHRTLKAIVYLQCCYRRMMAKRELKK---------LKIEARSVE 917

Query: 381  SERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNT 440
              +      E +  +L+R +  + +  + L  ++N  + +     +++ S  E L     
Sbjct: 918  RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE 977

Query: 441  EFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRE 500
            E     N +   + ++ + + E+   ++++ +++   ++   E       L+E N  ++ 
Sbjct: 978  EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037

Query: 501  LKMIMSSREEQLVQAMDTLQEKD--EHVLILQNELDGTKLKV 540
             K  ++ R     + +    EK   E    L+ +L+  +L+ 
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 71.3 bits (175), Expect = 8e-13
 Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 14/206 (6%)

Query: 110  LAALKKKEEDLEDAERRVCLEHSELNRAKEELLRRE-REIDVACSRHEKLEEELGQSNLK 168
              A       L+      C     + + + + L+ E R ++     H  LE ++ Q   K
Sbjct: 877  WLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936

Query: 169  LVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSK 228
            +  Q +  + L  ++   +   +     L      L     E    +     +  E+   
Sbjct: 937  IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996

Query: 229  AQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEW 288
             + L++     K  E      +   ++   EL+    L K E+E+L              
Sbjct: 997  RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR------------ 1044

Query: 289  LLSQDALKKLAEEASRRMEETNDTLE 314
                D  K++ E   +++ E    LE
Sbjct: 1045 -RIHDQAKEITETMEKKLVEETKQLE 1069

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 41/280 (14%), Positives = 109/280 (38%), Gaps = 25/280 (8%)

Query: 167  LKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELE---LEKMRSELLKKSEEAAKIDS 223
            L+    A  I+  +     R +      + ++L+ L    L + + +++ +  ++  I  
Sbjct: 813  LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQK 872

Query: 224  ELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVE---------EEKL 274
             ++     ++       K    +Q   + +  K E  +  +  R VE         E K+
Sbjct: 873  HVRGWLARVHYHRT--LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930

Query: 275  KVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQ 334
              ++  ++++  E+    + +  L    S   E+    +E  R  ++   +  + ++S Q
Sbjct: 931  MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990

Query: 335  KSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNK 394
            + +A  RK++ + +     +   +EE            +    E++ +   L+      +
Sbjct: 991  EEIAKLRKELHQTQ----TEKKTIEEWADKYKH---ETEQLVSELKEQNTLLK---TEKE 1040

Query: 395  ELERDL-SMEKELVEELQNELNKEKYSLQQAIDEVSSLQE 433
            EL R +    KE+ E ++ +L +E   L+  +++     +
Sbjct: 1041 ELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 35/194 (18%), Positives = 86/194 (44%), Gaps = 6/194 (3%)

Query: 98   NLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEK 157
             +  L+   + ++A  K++ + L+   R V          + ++++ +R+ID     ++ 
Sbjct: 889  AIVYLQCCYRRMMA--KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946

Query: 158  LEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEE 217
            L E++    +   ++   +     RL+  ++E     + +   + E+ K+R EL +   E
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006

Query: 218  AAKIDSELK----SKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEK 273
               I+           Q+++E  E     +TE + L + I ++ +E+  ++  + VEE K
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066

Query: 274  LKVVEANLEKRTME 287
               ++ N E+   +
Sbjct: 1067 QLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.5 bits (160), Expect = 5e-11
 Identities = 37/238 (15%), Positives = 82/238 (34%), Gaps = 11/238 (4%)

Query: 110  LAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKL 169
                 K +  L + +  +  +H     A+    R  + I      + ++  +     LK+
Sbjct: 852  YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911

Query: 170  VSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKA 229
              +AR +E  K      + +I  +Q  +  +  E + +  ++       +    +L+S  
Sbjct: 912  --EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 230  QMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWL 289
            + L       +  E E ++    +   +EE+          + + K +E   +K   E  
Sbjct: 970  ERL-------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

Query: 290  LSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQ 347
                 LK+         EE N  + D  + K++   +  +LV   K L         +
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHD--QAKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 35/278 (12%)

Query: 114  KKKEEDLEDAERRV-CLEHSELNRAKEELLRREREIDV--ACSRHEKLEEELGQSNLKLV 170
            +K+ + + DA   +  L    L R K +++ RE +  +     R         ++   +V
Sbjct: 832  RKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV 891

Query: 171  SQARHIEDLKLRLKERDQEIAAMQSALSLKEL--ELEKMRSELLKKSEEAAKIDSELKSK 228
                    +  + + +  +I A +S    K+L   LE    +L +K +E  K    L  K
Sbjct: 892  YLQCCYRRMMAKRELKKLKIEA-RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950

Query: 229  AQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEW 288
               L         +  +++S  + ++  EEE + +       +E++  +   L +   E 
Sbjct: 951  MNNLEIT---YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE- 1006

Query: 289  LLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQE 348
                   K + E A +   ET   + + +    LL   + EL       A    +  E+ 
Sbjct: 1007 ------KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK- 1059

Query: 349  HLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKL 386
                    +L E+ K L          ++++  ER++ 
Sbjct: 1060 --------KLVEETKQL----------ELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 58.2 bits (141), Expect = 9e-09
 Identities = 42/274 (15%), Positives = 105/274 (38%), Gaps = 9/274 (3%)

Query: 279  ANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFR-RVKKLLSDVRSELV-SSQKS 336
             +  +    +L    A   +  +  +RM       +  R     L + +R  LV +  + 
Sbjct: 803  GHQARCYATFLRRTRAAIII--QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM 860

Query: 337  LASSRKQMEEQEHLLG-KQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKE 395
            +    K +  Q+H+ G    V      K++       +    + E +++K+   EAR+ E
Sbjct: 861  MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI---EARSVE 917

Query: 396  LERDLSMEKE-LVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKES 454
              + L +  E  + +LQ +++++    +  ++++++L+     +  +       LR+ E 
Sbjct: 918  RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE 977

Query: 455  DLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQ 514
            +   A   + +L+ + A L+  L +   E     +  ++  +E  +L   +  +   L  
Sbjct: 978  EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037

Query: 515  AMDTLQEKDEHVLILQNELDGTKLKVSEAETVVE 548
              + L  +         E    KL     +  ++
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 13/173 (7%)

Query: 106 LQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQS 165
            +  +A       +++     +     E   A    L+R+++I V   ++ ++ ++L   
Sbjct: 834 REPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKL--- 890

Query: 166 NLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSEL 225
                      + + L   E    I A+Q+ L   E    + +S   + + +   I ++L
Sbjct: 891 -----ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQL 945

Query: 226 KSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVE 278
                     N V +  E +     +     +   E        E E+L+ +E
Sbjct: 946 TELNY-----NGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 34/252 (13%), Positives = 84/252 (33%), Gaps = 34/252 (13%)

Query: 203 ELEKMRSELLKKSEEAAKIDSEL------KSKAQMLNEANEVVKKQE------------- 243
           +LE+ R+    KS+   + +  +      ++  +  +  + +   Q              
Sbjct: 749 QLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 808

Query: 244 -------TEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALK 296
                  +E++++   +Q K   ++     R+       +    ++        ++    
Sbjct: 809 PPKGQEVSELEAIYNSLQTKLRLIK-----REPFVAPAGLTPNEIDSTWSALEKAEQEHA 863

Query: 297 KLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHL--LGKQ 354
           +      +R ++    L+ + R+ K L +  +       S  +       Q  L  L   
Sbjct: 864 EALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAF 923

Query: 355 LVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNEL 414
             E +  +    S + S+  AQ+   +      +TE ++    +  +  K   E  +N L
Sbjct: 924 DGECQSLEGQSNSDLLSIL-AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 982

Query: 415 NKEKYSLQQAID 426
             E   LQ+  D
Sbjct: 983 LAELERLQKIED 994

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 55.3 bits (133), Expect = 8e-08
 Identities = 36/279 (12%), Positives = 100/279 (35%), Gaps = 13/279 (4%)

Query: 91   KDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLE-----HSELNRAKEELLRRE 145
            +++       I           +      +  + R   +      H  +  A   LL+R+
Sbjct: 1827 RNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQ 1886

Query: 146  REIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELE 205
                   +    L+       L +  +   +E+ +L L    +++   ++ +   ++ L 
Sbjct: 1887 GRQ-NYVTPRHYLDFINQVVLL-INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLA 1944

Query: 206  KMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVA 265
            +   EL  K+E+A +   ++    Q      +  ++ + ++    K I  ++ +  A + 
Sbjct: 1945 QKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLE 2004

Query: 266  LRKVEEEK---LKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKL 322
              +        ++ +E    +  ++       +  L +  +   EE    + +  ++K  
Sbjct: 2005 KAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064

Query: 323  LSDVRSELVSSQK---SLASSRKQMEEQEHLLGKQLVEL 358
             S V++++  S     +L S R + E+Q      Q+  +
Sbjct: 2065 SSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 39/320 (12%), Positives = 104/320 (32%), Gaps = 48/320 (15%)

Query: 378  EVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVS-SLQEELG 436
             ++ E  +        +E E   +    +    ++ +      + Q I E +  L +  G
Sbjct: 1828 NLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQG 1887

Query: 437  RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNN 496
            R+N  +    + L     D +   + + N K  Q      LEE+   L+   + L +   
Sbjct: 1888 RQN--YVTPRHYL-----DFINQVVLLINEKRDQ------LEEEQLHLNIGLKKLRDTEA 1934

Query: 497  EVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHK 556
            +V++L++ ++ +  +L    +   +K + ++  Q   +  +    E +  ++        
Sbjct: 1935 QVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAV 1994

Query: 557  LVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEV 616
              +    D                              T  L  E++         +++ 
Sbjct: 1995 QKVKAYADLEK------------------------AEPTGPLREEVEQLENAANELKLKQ 2030

Query: 617  LAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQERFGEKSVGDL 676
                  +T  ++ + T         +E ++++          K+     +R     + +L
Sbjct: 2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK--NKV-----DRS-IALLDNL 2082

Query: 677  AIE--RLQLEAAQLEVEAAT 694
              E  R + ++     + +T
Sbjct: 2083 NSERGRWEQQSENFNTQMST 2102

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 34/214 (15%), Positives = 82/214 (38%), Gaps = 12/214 (5%)

Query: 292  QDALKKLAEEASRRMEETNDTLEDF-RRVKKLLSDVRSELVSSQKS-------LASSRKQ 343
             +A  +L +   R+   T     DF  +V  L+++ R +L   Q         L  +  Q
Sbjct: 1876 GEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQ 1935

Query: 344  MEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSME 403
            +++ +  L ++  EL+ + +     +  +   Q   E ++   R  + +     ++++++
Sbjct: 1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQ 1995

Query: 404  KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEI 463
            K        +L K +       +EV  L+        +  E    +   E  +   K E 
Sbjct: 1996 KVKAYA---DLEKAE-PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051

Query: 464  QNLKSKQASLQLILEEKDFELSNARQMLEELNNE 497
              L  +   ++    +   ++  +  +L+ LN+E
Sbjct: 2052 ATLIRETEQIKTESSKVKNKVDRSIALLDNLNSE 2085

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 37/273 (13%), Positives = 87/273 (31%), Gaps = 23/273 (8%)

Query: 203  ELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEA 262
             +E+ R + L       K D   ++   +    +   K+   E +     I+  +  + A
Sbjct: 753  RIEEAREQRLGSE--QTKSDYLKRANELVQWIND---KQASLESRDFGDSIESVQSFMNA 807

Query: 263  SVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKL 322
                +K E+            +  E    +     L  +   R+ +    +         
Sbjct: 808  HKEYKKTEK----------PPKGQEVSELEAIYNSL--QTKLRLIKREPFVAPAGLTPNE 855

Query: 323  LSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESE 382
            +    S L  +++  A + +   +++  +   L +     K L ++ T+        E+ 
Sbjct: 856  IDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETG 915

Query: 383  RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA-IDEVSSLQEELGRKNTE 441
               +   +A+ K LE      + L  +  ++L      L +   + V  L E       +
Sbjct: 916  D-SITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQ 974

Query: 442  FGETENLLRVKESDLVEAKLE----IQNLKSKQ 470
                         + + A+LE    I++L    
Sbjct: 975  QWTGVKSSAETYKNTLLAELERLQKIEDLHHHH 1007

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 19/189 (10%), Positives = 56/189 (29%), Gaps = 9/189 (4%)

Query: 316  FRRVKKLL--SDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLK 373
               ++ +      +  L+  +  +A +     E +          +E  ++L   +   K
Sbjct: 823  VSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQK 882

Query: 374  DAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQE 433
               V ++     L+  +  N    + + +      +    +  +  +L+    E  SL+ 
Sbjct: 883  KIAVLLQKYNRILK--KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 940

Query: 434  ELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEE 493
            +             L ++ E +        +   +  A     ++       N      E
Sbjct: 941  QSNSD-----LLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 995

Query: 494  LNNEVRELK 502
               ++ +L 
Sbjct: 996  RLQKIEDLH 1004

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 25/212 (11%), Positives = 58/212 (27%), Gaps = 11/212 (5%)

Query: 97   LNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHE 156
               +  E   +    +  +   +    + R+      +  A       +          +
Sbjct: 809  KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQ 868

Query: 157  KLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSE 216
            +  E L     +    A  ++     LK+ +    A   ++ L   E     + +  K +
Sbjct: 869  EHAEALRIELKRQKKIAVLLQKYNRILKKLENW--ATTKSVYLGSNETGDSITAVQAKLK 926

Query: 217  EAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKV 276
                 D E +S     N     +  Q TE  +   V +  E +           +   + 
Sbjct: 927  NLEAFDGECQSLEGQSNSDLLSILAQLTE-LNYNGVPELTERKDTFFAQQWTGVKSSAET 985

Query: 277  VEANLEKRTMEWLLSQDALKKLAEEASRRMEE 308
             +  L           + L+K+ E+       
Sbjct: 986  YKNTLLAE-------LERLQKI-EDLHHHHHH 1009

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 50.3 bits (119), Expect = 2e-06
 Identities = 46/323 (14%), Positives = 107/323 (33%), Gaps = 6/323 (1%)

Query: 188 QEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEV--VKKQETE 245
           + IA M+ A +L    L  +      +      +   + +K++ + E   +  V +   E
Sbjct: 386 RSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKE 445

Query: 246 IQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRR 305
           +  L +  +E  +E    +   +  +  L+       +RT     S +  K L  E +  
Sbjct: 446 LPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP----SNELYKPLRAEGTNF 501

Query: 306 MEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSL 365
               +  ++   +VK+     R  +V   K        +         Q  E+    KSL
Sbjct: 502 RTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSL 561

Query: 366 TSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAI 425
            S +  +K  +  +E++   +                          EL++    L   +
Sbjct: 562 LSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKV 621

Query: 426 DEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELS 485
            E    QE L +      +  + ++   ++    +  ++NL +   +   ++        
Sbjct: 622 QESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTK 681

Query: 486 NARQMLEELNNEVRELKMIMSSR 508
              ++ E L     +   I+ +R
Sbjct: 682 FYNELTEILVRFQNKCSDIVFAR 704

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 21/50 (42%)

Query: 641 EK-ELKKLEETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLE 689
           EK  LKKL+ ++       KLYA       + S   LAI+      A +E
Sbjct: 18  EKQALKKLQASL-------KLYA-------DDSAPALAIK------ATME 47

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 11/115 (9%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 409 ELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEA-KLEIQNLK 467
            + +  NK + +    + E+  L ++              ++       +     I+ L 
Sbjct: 24  GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLT 83

Query: 468 SKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEK 522
            K   +   +   +  +      +++L +        ++  ++++ Q     QE 
Sbjct: 84  QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEP 138

>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} Length = 877

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 37/231 (16%), Positives = 83/231 (35%), Gaps = 3/231 (1%)

Query: 91  KDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNR---AKEELLRRERE 147
                  N  + E+        +KK ++DLE + R+      E+ +   +K     +   
Sbjct: 590 AGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEA 649

Query: 148 IDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKM 207
              A S+ +++   + +   +      + ++LK   +E   ++  +   L       ++ 
Sbjct: 650 KAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEF 709

Query: 208 RSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALR 267
           ++   K   +A +    LK   + L    E + K E    +L +    K ++       +
Sbjct: 710 KNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAK 769

Query: 268 KVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRR 318
              E  +K V  N +       L+Q      A     R+E+    L++F +
Sbjct: 770 SDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSK 820

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	771
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.22
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.86
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.62
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.88
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.64
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.13
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.85
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.8
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.62
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.95
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.58
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.25
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.19
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.03
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.76
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.44
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	92.88
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.71
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.37
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	90.29
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.02
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	89.07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	88.67
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	88.06
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	87.86
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	86.46
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	85.91
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.79
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	85.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	85.13
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	84.28
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	82.85
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	82.8

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.22  E-value=7.7e-07  Score=86.14  Aligned_cols=111  Identities=14%  Similarity=0.142  Sum_probs=49.9

Q ss_pred             HHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 004160          367 SYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETE  446 (771)
Q Consensus       367 s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqEle  446 (771)
                      .+...+..++.++..-...+..+......+...+..+...+..+...+.....++..+..++..+..++..+...+..+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (284)
T 1c1g_A           38 QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE  117 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444555555555555555555555555555555555544444444444444444444444444


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          447 NLLRVKESDLVEAKLEIQNLKSKQASLQLIL  477 (771)
Q Consensus       447 keIeelEnELeeLq~eiEqLKsEIesLq~EL  477 (771)
                      ..+......+..+...+..+...+..+...+
T Consensus       118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  148 (284)
T 1c1g_A          118 KAADESERGMKVIESRAQKDEEKMEIQEIQL  148 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            4444333333333333333333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.12  E-value=6.6e-06  Score=79.59  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160          444 ETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKD  523 (771)
Q Consensus       444 ElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkE  523 (771)
                      .+...+....+.+..+...+..+...+..+...+..+...+......+..+...+..+...+..++..+..+...+....
T Consensus       171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  250 (284)
T 1c1g_A          171 IIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE  250 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333334444444444444444444444444444


Q ss_pred             HHHHHHHHhhhhhhhh
Q 004160          524 EHVLILQNELDGTKLK  539 (771)
Q Consensus       524 E~L~~~q~ELNe~nIe  539 (771)
                      ..+..+...+..+...
T Consensus       251 ~~~~~~~~~~~~~~~~  266 (284)
T 1c1g_A          251 KSIDDLEDELYAQKLK  266 (284)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.86  E-value=2.3e-08  Score=121.49  Aligned_cols=121  Identities=14%  Similarity=0.095  Sum_probs=27.0

Q ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Q 004160          372 LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRV  451 (771)
Q Consensus       372 l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIee  451 (771)
                      +.+++.+++.++..+..+..++..+..++..++.++..+..++...+..+..+...+..+..++..+..++.++...+..
T Consensus       894 ~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~  973 (1184)
T 1i84_S          894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK  973 (1184)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555555555555555555555555555555544444444444444444


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160          452 KESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLE  492 (771)
Q Consensus       452 lEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLe  492 (771)
                      ++.++..+..++..++.++...+..+..+..++......+.
T Consensus       974 l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~ 1014 (1184)
T 1i84_S          974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014 (1184)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444433333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.62  E-value=7.5e-08  Score=117.04  Aligned_cols=18  Identities=17%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 004160          544 ETVVEQIVDLTHKLVISN  561 (771)
Q Consensus       544 Etl~eRIeeLt~eLe~s~  561 (771)
                      ..+..++.++..+|..+.
T Consensus      1147 ~~L~~ele~L~~~Ieel~ 1164 (1184)
T 1i84_S         1147 RDLSEELEALKTELEDTL 1164 (1184)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            455566666666666544

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.88  E-value=0.31  Score=48.77  Aligned_cols=30  Identities=7%  Similarity=-0.008  Sum_probs=11.5

Q ss_pred             HhHHhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160          435 LGRKNTEFGETENLLRVKESDLVEAKLEIQ  464 (771)
Q Consensus       435 LqelekELqElekeIeelEnELeeLq~eiE  464 (771)
                      +...++....+...+..+..++..++.+..
T Consensus        51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~   80 (189)
T 2v71_A           51 LVQAEQRNRDLQADNQRLKYEVEALKEKLE   80 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.64  E-value=0.67  Score=62.32  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHH
Q 004160          380 ESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEA  459 (771)
Q Consensus       380 ~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeL  459 (771)
                      +=++.+|..++.+....+.++...+.++..++..+..++..++....+...++.+.......+.-..+.|.-+-.|....
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence            66778888888888888888888888888888888999999988888888898888888888888888888899998888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004160          460 KLEIQNLKSKQASLQLI  476 (771)
Q Consensus       460 q~eiEqLKsEIesLq~E  476 (771)
                      ...+..++.++..+-..
T Consensus      2090 ~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A         2090 EQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHH
Confidence            88888888877766544

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.13  E-value=1.2  Score=44.57  Aligned_cols=12  Identities=17%  Similarity=0.116  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 004160          384 VKLRVTEARNKE  395 (771)
Q Consensus       384 ~~l~~aqsE~kE  395 (771)
                      ..|+.++...++
T Consensus        31 ~El~EFqesSrE   42 (189)
T 2v71_A           31 DELVEFQEGSRE   42 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.85  E-value=2.1  Score=57.69  Aligned_cols=63  Identities=16%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccc-hHHHHHHHhhhh
Q 004160          576 GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL--TVK-DEELKTVLGRLD  638 (771)
Q Consensus       576 eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL--~~k-d~elk~~~~~~~  638 (771)
                      +.+|+..-+..++.+++++.+.|-......+..|.++|+.|...=..-  ++. |++|=.+|...-
T Consensus      2309 edQLL~~vv~~ErPeLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK 2374 (3245)
T 3vkg_A         2309 QSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLK 2374 (3245)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence            677777778888999999999999999999999999999987654321  233 456666665543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.80  E-value=1.5  Score=53.62  Aligned_cols=27  Identities=7%  Similarity=0.089  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          398 RDLSMEKELVEELQNELNKEKYSLQQA  424 (771)
Q Consensus       398 rqLlqlekeIeeLr~qLqkekqeLEel  424 (771)
                      ....+++++|..|+..++..+.+...+
T Consensus       921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L  947 (1080)
T 2dfs_A          921 KLHIGLENKIMQLQRKIDEQNKEYKSL  947 (1080)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555544444443333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.62  E-value=1.8  Score=42.07  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004160          384 VKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEI  463 (771)
Q Consensus       384 ~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~ei  463 (771)
                      ..+..+...+.+|+..+-...+-+-.+...=.+..++-+.+..+|..|...+...+......+..+..++..+..+..++
T Consensus        35 ERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L  114 (155)
T 2efr_A           35 ERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL  114 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666666666666666666666666666666666666666665555566666665555555555555


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          464 QNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELK  502 (771)
Q Consensus       464 EqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELK  502 (771)
                      ..-+.....+...+...-..|..+......+.+++..|+
T Consensus       115 ~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~  153 (155)
T 2efr_A          115 YAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK  153 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            555555555555555555555555555555555544443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.31  E-value=2.3  Score=41.34  Aligned_cols=122  Identities=16%  Similarity=0.158  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004160          410 LQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQ  489 (771)
Q Consensus       410 Lr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqr  489 (771)
                      +...+.+...+.+.....+..|..++..              .-+.+.++...-+....+-..++..|..+..++..+..
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~--------------v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~   91 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKT--------------VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET   91 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555544444444444444433              22333344444555555555566666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 004160          490 MLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAET  545 (771)
Q Consensus       490 rLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEt  545 (771)
                      +-....-.+..|...++.+++.+......+......++..-.+|+.+...|-.++.
T Consensus        92 RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~  147 (155)
T 2efr_A           92 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLEN  147 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            66666667777888888888888888888888888888777777777666655543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.95  E-value=0.41  Score=53.24  Aligned_cols=19  Identities=21%  Similarity=0.422  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004160          395 ELERDLSMEKELVEELQNE  413 (771)
Q Consensus       395 ELErqLlqlekeIeeLr~q  413 (771)
                      .++..+.+.+..+...+..
T Consensus       467 ~l~~~~~~~~~~l~~~~~~  485 (597)
T 3oja_B          467 QLTNEQIQQEQLLQGLHAE  485 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.58  E-value=2.9  Score=38.88  Aligned_cols=30  Identities=17%  Similarity=0.153  Sum_probs=11.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160          452 KESDLVEAKLEIQNLKSKQASLQLILEEKD  481 (771)
Q Consensus       452 lEnELeeLq~eiEqLKsEIesLq~ELEEId  481 (771)
                      ....+..+......+...+..+..++++..
T Consensus        67 ~EE~~~~L~~~k~eLe~~l~el~~rleeee   96 (129)
T 2fxo_A           67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEE   96 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333343333344444444444444333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.38  E-value=1.8  Score=38.94  Aligned_cols=92  Identities=16%  Similarity=0.144  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160          404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE  483 (771)
Q Consensus       404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE  483 (771)
                      .++|..++...++...+.+.+..++........+              .+.++.+|+.++..+...+..++..+......
T Consensus         8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~--------------~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k   73 (101)
T 3u1c_A            8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ--------------LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS   73 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444443333333333              34444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160          484 LSNARQMLEELNNEVRELKMIMSSRE  509 (771)
Q Consensus       484 LeeiqrrLeeLr~ELkELKslIesLE  509 (771)
                      +............++..|+..++.++
T Consensus        74 Lee~ek~~~~aE~ev~~L~RriqllE   99 (101)
T 3u1c_A           74 LLFAEENAAKAESEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44444444444455555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.25  E-value=0.71  Score=51.32  Aligned_cols=7  Identities=29%  Similarity=0.259  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 004160          395 ELERDLS  401 (771)
Q Consensus       395 ELErqLl  401 (771)
                      ..+..+.
T Consensus       474 ~~~~~l~  480 (597)
T 3oja_B          474 QQEQLLQ  480 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.19  E-value=14  Score=45.24  Aligned_cols=10  Identities=10%  Similarity=0.285  Sum_probs=5.2

Q ss_pred             HhhhHHHHHH
Q 004160          281 LEKRTMEWLL  290 (771)
Q Consensus       281 le~~~~~wl~  290 (771)
                      +-+...+|+.
T Consensus       822 IQs~~Rg~~~  831 (1080)
T 2dfs_A          822 IQKFQRMYVV  831 (1080)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhhHHH
Confidence            4444556654

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.03  E-value=5.1  Score=39.48  Aligned_cols=17  Identities=35%  Similarity=0.331  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004160          345 EEQEHLLGKQLVELEEQ  361 (771)
Q Consensus       345 e~q~~~l~~q~~el~~q  361 (771)
                      .+.-..|++|+.|+.+.
T Consensus         5 neKi~~LekQL~E~n~k   21 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDL   21 (168)
T ss_dssp             -----CTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            34456677777776553

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.76  E-value=2.7  Score=37.79  Aligned_cols=25  Identities=16%  Similarity=0.186  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhH
Q 004160          418 KYSLQQAIDEVSSLQEELGRKNTEF  442 (771)
Q Consensus       418 kqeLEelqeEIesLQeELqelekEL  442 (771)
                      +.+......++.+|+..++.++.++
T Consensus        36 e~~~~~~E~Ei~sL~kk~~~lE~el   60 (101)
T 3u1c_A           36 EERSKQLEDDIVQLEKQLRVTEDSR   60 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.44  E-value=2.9  Score=37.40  Aligned_cols=58  Identities=14%  Similarity=0.134  Sum_probs=28.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160          452 KESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE  509 (771)
Q Consensus       452 lEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE  509 (771)
                      .+.++.+++.++..+...+..++..+......+............++..|+..|..++
T Consensus        42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3334444444444444444444555555555555555555555555555555555443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.88  E-value=7.4  Score=37.85  Aligned_cols=138  Identities=13%  Similarity=0.174  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160          385 KLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQ  464 (771)
Q Consensus       385 ~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiE  464 (771)
                      ||=.+=.....|+..+..+...+...+..+..++..           +.++..+..++......+..+...+..-.....
T Consensus         7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~-----------r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~   75 (154)
T 2ocy_A            7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQL-----------KEDYNTLKRELSDRDDEVKRLREDIAKENELRT   75 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH-----------HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            444455555666666666666666555544443322           222333333444455555555555555555566


Q ss_pred             HHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004160          465 NLKSKQASLQLILEEKDFELS-NARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNEL  533 (771)
Q Consensus       465 qLKsEIesLq~ELEEIdeELe-eiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~EL  533 (771)
                      ........+..+++++...|. +++..+...+-+-..++.....++.++.+...-+.-...++..++..+
T Consensus        76 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A           76 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM  145 (154)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666667777777766664 345556655555555555555555555555555555555555444433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.71  E-value=4.6  Score=36.06  Aligned_cols=89  Identities=10%  Similarity=0.097  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004160          403 EKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDF  482 (771)
Q Consensus       403 lekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIde  482 (771)
                      +.+++..++...++...+.+.+..++.........+..++..+.+.+..++.++..+...+......+............
T Consensus         7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~   86 (101)
T 3u59_A            7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA   86 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555544444


Q ss_pred             HHHHHHHHH
Q 004160          483 ELSNARQML  491 (771)
Q Consensus       483 ELeeiqrrL  491 (771)
                      +...++++|
T Consensus        87 evasLnRri   95 (101)
T 3u59_A           87 EVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            455555444

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=90.29  E-value=4.2  Score=34.97  Aligned_cols=71  Identities=18%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160          459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLIL  529 (771)
Q Consensus       459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~  529 (771)
                      ++.++..++....+...+.+....++.....+...+..++..|+..+..+++.+..+.+.+......|...
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea   74 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666777777777776666666666666655544

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.02  E-value=2.6  Score=40.01  Aligned_cols=68  Identities=21%  Similarity=0.227  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004160          454 SDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQE  521 (771)
Q Consensus       454 nELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkE  521 (771)
                      .++..++.....+...+.....++..+..++...+-+++.+..++..++..+..+++.+..+++.++.
T Consensus        68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A           68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445555555666666666666666666666666666666666666666666666666666655543

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=89.07  E-value=3.6  Score=39.47  Aligned_cols=86  Identities=14%  Similarity=0.148  Sum_probs=42.7

Q ss_pred             HhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004160          435 LGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQ  514 (771)
Q Consensus       435 LqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeE  514 (771)
                      +....+...+.......+++.-..-..++..+..++......-++-+.++....+++.-+...+..........+..+.+
T Consensus        26 Leeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~e  105 (147)
T 2b9c_A           26 LEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE  105 (147)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444455555555555555555555555555555555555555555555554444444444444444443333


Q ss_pred             HHHHHH
Q 004160          515 AMDTLQ  520 (771)
Q Consensus       515 leeeLk  520 (771)
                      +...|.
T Consensus       106 LEeeL~  111 (147)
T 2b9c_A          106 LEEELK  111 (147)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.67  E-value=9.7  Score=41.45  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160          442 FGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLE  492 (771)
Q Consensus       442 LqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLe  492 (771)
                      ..+.+...+..+......+.++++++.+-+.++..+++++..+..+...+.
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (487)
T 3oja_A          423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ  473 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence            333444444444444444555555555555555555555444444444433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.06  E-value=6.5  Score=36.57  Aligned_cols=54  Identities=13%  Similarity=0.109  Sum_probs=18.8

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          371 SLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA  424 (771)
Q Consensus       371 ~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEel  424 (771)
                      -+.+.+..+..-...|+..+.++.++.+.+..++-+|..+.+....++..+...
T Consensus        18 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~   71 (131)
T 3tnu_A           18 KTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEET   71 (131)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344444445555555666666666666666666666666666655555554443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.86  E-value=7.1  Score=36.17  Aligned_cols=54  Identities=13%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          371 SLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA  424 (771)
Q Consensus       371 ~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEel  424 (771)
                      -+.+.+..+..-...|+..+.++.++.+.+..++-+|..+..+...++..+...
T Consensus        16 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~   69 (129)
T 3tnu_B           16 KYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA   69 (129)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            334444444444555566666666666666666666666666655555554443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=86.46  E-value=6  Score=37.56  Aligned_cols=6  Identities=0%  Similarity=-0.042  Sum_probs=2.5

Q ss_pred             HHHHHH
Q 004160          361 QKKSLT  366 (771)
Q Consensus       361 q~~~~~  366 (771)
                      .|..||
T Consensus        56 ~r~aVL   61 (138)
T 3hnw_A           56 ELRTDM   61 (138)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            344444

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.79  E-value=11  Score=32.41  Aligned_cols=24  Identities=17%  Similarity=0.122  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          404 KELVEELQNELNKEKYSLQQAIDE  427 (771)
Q Consensus       404 ekeIeeLr~qLqkekqeLEelqeE  427 (771)
                      .+++..++...+....+++....+
T Consensus         5 kkKm~~lk~e~d~a~~~~~~~e~~   28 (81)
T 1ic2_A            5 KKKMQMLKLDKENALDRAEQAEAD   28 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444333333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=85.47  E-value=7.4  Score=37.32  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=16.8

Q ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160          370 TSLKDAQVEVESERVKLRVTEARNKELERDLS  401 (771)
Q Consensus       370 ~~l~~a~~e~~~~~~~l~~aqsE~kELErqLl  401 (771)
                      ..|..|+.....-..+|..+.+...+.++-.-
T Consensus        10 eeLer~eerl~~a~~kLeeaek~adE~eR~~k   41 (147)
T 2b9c_A           10 EELDRAQERLATALQKLEEAEKAADESERGMK   41 (147)
T ss_dssp             -CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555666655555555444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=85.13  E-value=22  Score=38.66  Aligned_cols=34  Identities=29%  Similarity=0.206  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160          491 LEELNNEVRELKMIMSSREEQLVQAMDTLQEKDE  524 (771)
Q Consensus       491 LeeLr~ELkELKslIesLEgqLeEleeeLkEkEE  524 (771)
                      +..++.+-..++..+..+...+.++...|++.-.
T Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (487)
T 3oja_A          444 ETQLAEENARLKKLNGEADLALASANATLQELVV  477 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence            3333344444444555555555555555544433

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=84.28  E-value=2.3  Score=37.20  Aligned_cols=69  Identities=19%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH-Hhhh
Q 004160          583 GLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL-EETV  651 (771)
Q Consensus       583 eLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~-~~~~  651 (771)
                      .|...++.+...++.++..-..++..++.++.+|.+.+-.......||+-+++.||.|=-||..| +.+.
T Consensus         3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa   72 (79)
T 3cvf_A            3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA   72 (79)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45667788889999999999999999999999999999999999999999999999988888877 5543

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=82.85  E-value=26  Score=31.29  Aligned_cols=44  Identities=11%  Similarity=0.041  Sum_probs=16.8

Q ss_pred             HHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160          428 VSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQA  471 (771)
Q Consensus       428 IesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIe  471 (771)
                      -..+-.+|..++++-..+...|..++.+...+......+-....
T Consensus        20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn   63 (96)
T 3q8t_A           20 EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS   63 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.80  E-value=37  Score=33.03  Aligned_cols=106  Identities=20%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160          390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK  469 (771)
Q Consensus       390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE  469 (771)
                      +.++..+...+.....++..|...+................+..|+..+...+++      .-+..+......       
T Consensus        43 r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe------EAN~MVa~ar~~-------  109 (154)
T 2ocy_A           43 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNMVADARKE-------  109 (154)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-------
Confidence            3344444444455555555555555555555555555555555555544433332      222233333222       


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160          470 QASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSR  508 (771)
Q Consensus       470 IesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesL  508 (771)
                      ...++.+...+..++.+....++.++.++..||..+..+
T Consensus       110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m  148 (154)
T 2ocy_A          110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL  148 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            223333333444444444445555555555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	771
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	94.57

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.57  E-value=1.1  Score=37.62  Aligned_cols=32  Identities=6%  Similarity=0.137  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHH
Q 004160          351 LGKQLVELEEQKKSLTSYMTSLKDAQVEVESE  382 (771)
Q Consensus       351 l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~  382 (771)
                      +..++..+.+....+.....-+....-++..-
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~k~~~~e~~~~~~   41 (185)
T d2ap3a1          10 YLKQVDKIKDDEEPIKTVGKKIAELDEKKKKL   41 (185)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444333